BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042680
         (530 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|I1S2N3|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
           FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1
          Length = 680

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 111/270 (41%), Gaps = 31/270 (11%)

Query: 256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
           Y  V  ++L  GGS        ++     NA         TSPN  +    +   RT   
Sbjct: 430 YDAVKGKILTFGGSPDY-----QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 484

Query: 316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
            V+LP+G   I  G   G         P   P +Y    PE   F +  P  I R+YHS+
Sbjct: 485 SVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIY---VPEQDTFYKQNPNSIVRVYHSI 539

Query: 376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYA--ALRPAILEDQSDK 433
           + LLPDG+VF GG     G             + FTP YL       A RP I    +  
Sbjct: 540 SLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS 594

Query: 434 AATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVD 493
               G+   + + +   +T    + S++     TH ++ +QR + L+   L NN   G +
Sbjct: 595 VKVGGR---ITISTDSSIT----KASLIRYGTATHTVNTDQRRIPLT---LTNN---GGN 641

Query: 494 EVVVAAPPTSALAPPGYYLLSVVNQ-GIPS 522
                 P  S +A PGY++L V+N  G+PS
Sbjct: 642 SYSFQVPSDSGVALPGYWMLFVMNSAGVPS 671


>sp|P0CS93|GAOA_GIBZA Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1
          Length = 680

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 31/270 (11%)

Query: 256 YKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMAD 315
           Y  V  ++L  GGS        ++     NA         TSPN  +    +   RT   
Sbjct: 430 YDAVKGKILTFGGSPDY-----QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 484

Query: 316 GVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375
            V+LP+G   I  G   G         P   P +Y    PE   F +  P  I R+YHS+
Sbjct: 485 SVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIY---VPEQDTFYKQNPNSIVRVYHSI 539

Query: 376 ANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYA--ALRPAILEDQSDK 433
           + LLPDG+VF GG     G             + FTP YL       A RP I    +  
Sbjct: 540 SLLLPDGRVFNGG-----GGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQS 594

Query: 434 AATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVD 493
               G     R+  S   +I+  + S++     TH ++ +QR + L+   L NN   G +
Sbjct: 595 VKVGG-----RITISTDSSIS--KASLIRYGTATHTVNTDQRRIPLT---LTNN---GGN 641

Query: 494 EVVVAAPPTSALAPPGYYLLSVVNQ-GIPS 522
                 P  S +A PGY++L V+N  G+PS
Sbjct: 642 SYSFQVPSDSGVALPGYWMLFVMNSAGVPS 671


>sp|Q821U7|SYC_CHLCV Cysteine--tRNA ligase OS=Chlamydophila caviae (strain GPIC) GN=cysS
           PE=3 SV=1
          Length = 476

 Score = 33.9 bits (76), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 368 IPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKF 410
           IP+M  ++A LL +G  +VG   D+  YF   KFPT  +L + 
Sbjct: 126 IPQMIEAIAKLLDEGIAYVG--QDSSVYFSIEKFPTYGKLSQL 166


>sp|Q54258|STRB1_STRGA Inosamine-phosphate amidinotransferase 1 OS=Streptomyces
           glaucescens GN=strB1 PE=3 SV=1
          Length = 348

 Score = 33.5 bits (75), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 337 WHCADKPSLKPMLYRPNAPEGQRFAELAP 365
           W  A KP L   +Y P AP GQR  +L P
Sbjct: 148 WLSAPKPRLADEMYEPTAPAGQRLTDLEP 176


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,310,540
Number of Sequences: 539616
Number of extensions: 9766719
Number of successful extensions: 19704
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19697
Number of HSP's gapped (non-prelim): 8
length of query: 530
length of database: 191,569,459
effective HSP length: 122
effective length of query: 408
effective length of database: 125,736,307
effective search space: 51300413256
effective search space used: 51300413256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)