Query 042680
Match_columns 530
No_of_seqs 327 out of 1321
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07250 Glyoxal_oxid_N: Glyox 100.0 3.3E-42 7.1E-47 339.5 20.3 198 49-268 1-243 (243)
2 KOG4441 Proteins containing BT 100.0 8.3E-33 1.8E-37 305.2 24.8 255 56-418 283-551 (571)
3 cd02851 Galactose_oxidase_C_te 100.0 3.2E-33 7E-38 239.5 12.1 99 418-530 1-101 (101)
4 PF09118 DUF1929: Domain of un 100.0 3.7E-33 8.1E-38 239.1 9.0 97 423-529 1-98 (98)
5 KOG4441 Proteins containing BT 100.0 1.5E-30 3.3E-35 287.3 24.7 254 25-378 301-568 (571)
6 PHA02713 hypothetical protein; 100.0 6.7E-30 1.5E-34 282.3 23.1 244 100-417 273-537 (557)
7 PHA02713 hypothetical protein; 100.0 5.4E-28 1.2E-32 267.2 22.1 236 30-366 277-543 (557)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 1.5E-26 3.4E-31 241.0 26.4 230 101-393 31-333 (346)
9 PRK14131 N-acetylneuraminic ac 99.9 2.1E-25 4.5E-30 235.6 27.4 243 101-414 52-369 (376)
10 PHA02790 Kelch-like protein; P 99.9 8.3E-26 1.8E-30 245.9 23.2 192 138-415 271-472 (480)
11 TIGR03548 mutarot_permut cycli 99.9 1.9E-24 4.1E-29 223.5 26.5 266 44-393 2-315 (323)
12 PLN02153 epithiospecifier prot 99.9 9.7E-24 2.1E-28 219.9 29.4 285 34-392 6-325 (341)
13 PHA02790 Kelch-like protein; P 99.9 2.8E-24 6.2E-29 233.9 22.8 200 56-363 270-477 (480)
14 PHA03098 kelch-like protein; P 99.9 4.2E-24 9E-29 235.3 24.2 237 100-417 265-515 (534)
15 PLN02153 epithiospecifier prot 99.9 3.6E-22 7.8E-27 208.1 26.5 251 106-417 4-288 (341)
16 PHA03098 kelch-like protein; P 99.9 1.7E-22 3.7E-27 222.5 24.4 238 33-368 272-523 (534)
17 PLN02193 nitrile-specifier pro 99.9 2E-21 4.3E-26 211.1 28.1 272 35-391 151-453 (470)
18 PLN02193 nitrile-specifier pro 99.9 3.3E-21 7.1E-26 209.4 29.1 243 101-417 139-414 (470)
19 TIGR03547 muta_rot_YjhT mutatr 99.9 1.2E-20 2.6E-25 196.7 22.6 228 137-415 16-300 (346)
20 PRK14131 N-acetylneuraminic ac 99.8 6.1E-20 1.3E-24 194.1 21.3 252 34-362 61-374 (376)
21 TIGR03548 mutarot_permut cycli 99.8 2.1E-19 4.5E-24 185.9 22.9 223 36-331 52-313 (323)
22 KOG4693 Uncharacterized conser 99.6 3.7E-13 7.9E-18 131.7 22.1 281 36-391 3-312 (392)
23 KOG0379 Kelch repeat-containin 99.3 4.8E-10 1E-14 122.5 22.9 252 43-383 57-332 (482)
24 KOG0379 Kelch repeat-containin 99.2 1.4E-09 3E-14 119.0 19.5 160 194-393 113-287 (482)
25 PF07250 Glyoxal_oxid_N: Glyox 99.2 5.1E-10 1.1E-14 111.1 14.4 135 213-390 47-189 (243)
26 KOG4693 Uncharacterized conser 99.1 3.2E-10 6.9E-15 111.3 12.2 160 197-393 17-203 (392)
27 KOG1230 Protein containing rep 99.0 3.4E-09 7.3E-14 109.6 14.7 207 97-390 96-316 (521)
28 KOG4152 Host cell transcriptio 98.8 9.2E-08 2E-12 101.1 16.2 277 34-391 16-342 (830)
29 KOG1230 Protein containing rep 98.8 1.3E-07 2.8E-12 98.0 15.3 164 197-392 71-253 (521)
30 PF13964 Kelch_6: Kelch motif 98.7 2.5E-08 5.5E-13 74.7 6.1 50 310-370 1-50 (50)
31 COG3055 Uncharacterized protei 98.6 3.6E-06 7.7E-11 86.4 17.7 221 108-393 69-361 (381)
32 COG3055 Uncharacterized protei 98.6 2.9E-06 6.3E-11 87.1 17.0 229 36-332 71-360 (381)
33 smart00612 Kelch Kelch domain. 98.4 3.9E-07 8.5E-12 66.2 4.1 45 323-378 1-45 (47)
34 KOG4152 Host cell transcriptio 98.4 6.8E-06 1.5E-10 87.3 14.4 204 138-390 42-273 (830)
35 PF01344 Kelch_1: Kelch motif; 98.3 4.2E-07 9.1E-12 66.8 3.4 47 310-367 1-47 (47)
36 PF13964 Kelch_6: Kelch motif 98.1 5.6E-06 1.2E-10 61.9 5.3 36 197-233 5-48 (50)
37 PF13418 Kelch_4: Galactose ox 98.0 6.4E-06 1.4E-10 61.2 3.4 48 310-367 1-48 (49)
38 PF07646 Kelch_2: Kelch motif; 97.8 3.6E-05 7.8E-10 57.3 5.6 49 310-367 1-49 (49)
39 PF01344 Kelch_1: Kelch motif; 97.8 2E-05 4.4E-10 57.7 4.2 35 197-232 5-47 (47)
40 PF13415 Kelch_3: Galactose ox 97.8 3.8E-05 8.2E-10 57.2 4.6 48 321-377 1-48 (49)
41 smart00612 Kelch Kelch domain. 97.8 3.6E-05 7.7E-10 55.7 4.2 46 262-322 1-47 (47)
42 PF07646 Kelch_2: Kelch motif; 97.6 0.00011 2.4E-09 54.7 5.5 37 195-232 3-49 (49)
43 PF13418 Kelch_4: Galactose ox 97.3 0.0004 8.8E-09 51.4 5.2 33 199-232 8-48 (49)
44 PLN02772 guanylate kinase 97.2 0.00082 1.8E-08 71.3 7.6 70 309-390 23-95 (398)
45 PF13415 Kelch_3: Galactose ox 97.1 0.0013 2.7E-08 48.9 5.2 46 261-318 2-48 (49)
46 PRK13684 Ycf48-like protein; P 96.6 1.1 2.4E-05 46.9 25.2 74 299-390 245-322 (334)
47 PRK11138 outer membrane biogen 95.4 4.5 9.7E-05 43.0 27.1 132 202-389 159-302 (394)
48 PLN02772 guanylate kinase 95.3 0.048 1E-06 58.1 7.6 60 259-331 33-96 (398)
49 PF13854 Kelch_5: Kelch motif 94.3 0.089 1.9E-06 37.7 4.6 41 307-354 1-41 (42)
50 TIGR03300 assembly_YfgL outer 94.1 8.7 0.00019 40.3 25.2 77 290-389 202-287 (377)
51 PRK11138 outer membrane biogen 92.0 3.7 7.9E-05 43.7 14.5 128 201-389 254-384 (394)
52 KOG0286 G-protein beta subunit 91.7 18 0.00038 37.2 18.2 158 200-418 105-275 (343)
53 TIGR01640 F_box_assoc_1 F-box 91.1 6.9 0.00015 38.2 14.4 154 203-390 5-162 (230)
54 PF08450 SGL: SMP-30/Gluconola 89.9 6 0.00013 38.9 13.0 156 202-413 50-213 (246)
55 PF13854 Kelch_5: Kelch motif 89.8 0.27 5.8E-06 35.2 2.3 25 366-392 1-25 (42)
56 KOG0310 Conserved WD40 repeat- 88.7 17 0.00037 39.5 15.7 177 96-355 45-227 (487)
57 COG4257 Vgb Streptogramin lyas 87.8 35 0.00077 35.0 20.2 123 198-374 194-320 (353)
58 PF13360 PQQ_2: PQQ-like domai 86.4 21 0.00046 34.2 14.1 141 200-391 33-183 (238)
59 TIGR01640 F_box_assoc_1 F-box 84.3 42 0.00092 32.6 18.0 118 199-355 98-230 (230)
60 KOG0310 Conserved WD40 repeat- 83.6 22 0.00047 38.7 13.3 133 138-331 165-300 (487)
61 TIGR03300 assembly_YfgL outer 82.5 36 0.00079 35.6 14.8 130 202-390 240-370 (377)
62 PF10282 Lactonase: Lactonase, 82.1 68 0.0015 33.4 23.3 108 99-223 64-177 (345)
63 PF07172 GRP: Glycine rich pro 81.7 0.99 2.1E-05 38.7 2.1 24 6-29 3-26 (95)
64 PRK11028 6-phosphogluconolacto 79.7 76 0.0016 32.4 23.9 20 136-155 134-153 (330)
65 PF07893 DUF1668: Protein of u 79.3 40 0.00086 35.5 13.6 40 101-148 88-127 (342)
66 KOG0272 U4/U6 small nuclear ri 78.1 66 0.0014 34.6 14.4 135 136-332 312-452 (459)
67 PRK11028 6-phosphogluconolacto 77.8 86 0.0019 32.0 24.8 28 196-223 128-159 (330)
68 KOG0315 G-protein beta subunit 75.4 98 0.0021 31.4 16.0 113 198-355 173-290 (311)
69 KOG2437 Muskelin [Signal trans 72.5 3.3 7.1E-05 45.2 3.3 112 260-391 272-395 (723)
70 KOG0315 G-protein beta subunit 71.6 44 0.00095 33.8 10.6 141 198-392 46-189 (311)
71 PF14870 PSII_BNR: Photosynthe 71.6 77 0.0017 32.9 13.0 31 35-66 134-164 (302)
72 PF13360 PQQ_2: PQQ-like domai 71.5 96 0.0021 29.6 19.2 26 200-225 73-99 (238)
73 PLN02919 haloacid dehalogenase 71.4 1.5E+02 0.0034 36.1 17.4 61 315-392 808-880 (1057)
74 PF07433 DUF1513: Protein of u 71.2 76 0.0017 33.0 12.7 100 200-329 12-118 (305)
75 PTZ00421 coronin; Provisional 70.3 85 0.0019 34.8 13.9 110 202-355 135-247 (493)
76 KOG0278 Serine/threonine kinas 70.1 91 0.002 31.6 12.4 135 198-391 150-288 (334)
77 PTZ00421 coronin; Provisional 68.3 1.6E+02 0.0034 32.8 15.4 25 318-355 176-200 (493)
78 KOG0278 Serine/threonine kinas 67.9 56 0.0012 33.1 10.4 28 198-225 230-259 (334)
79 PLN00181 protein SPA1-RELATED; 67.6 2.2E+02 0.0047 33.4 17.3 26 202-227 543-570 (793)
80 PLN00181 protein SPA1-RELATED; 65.2 91 0.002 36.5 13.5 141 202-391 586-729 (793)
81 KOG0286 G-protein beta subunit 63.6 1.9E+02 0.0041 30.0 22.4 138 201-390 154-293 (343)
82 cd00200 WD40 WD40 domain, foun 61.3 1.4E+02 0.003 27.8 23.4 136 200-389 101-238 (289)
83 PTZ00420 coronin; Provisional 61.1 96 0.0021 35.1 12.1 25 201-225 134-161 (568)
84 COG5184 ATS1 Alpha-tubulin sup 60.8 2.6E+02 0.0057 30.8 17.6 316 49-443 114-460 (476)
85 PF10282 Lactonase: Lactonase, 58.2 2.4E+02 0.0051 29.4 19.3 58 289-364 268-332 (345)
86 TIGR02658 TTQ_MADH_Hv methylam 57.2 1.1E+02 0.0024 32.5 11.2 35 195-229 48-94 (352)
87 TIGR03866 PQQ_ABC_repeats PQQ- 55.4 2E+02 0.0044 27.8 23.6 30 199-228 79-111 (300)
88 PRK13684 Ycf48-like protein; P 55.2 2.4E+02 0.0051 29.4 13.3 77 296-390 158-234 (334)
89 PF12276 DUF3617: Protein of u 54.9 13 0.00028 34.3 3.5 36 7-42 2-37 (162)
90 PF07893 DUF1668: Protein of u 54.1 1.1E+02 0.0023 32.3 10.5 57 318-393 73-129 (342)
91 PF15418 DUF4625: Domain of un 53.8 62 0.0013 29.4 7.5 92 422-517 13-115 (132)
92 KOG0289 mRNA splicing factor [ 52.4 1.9E+02 0.0042 31.4 11.8 123 195-368 350-474 (506)
93 KOG0271 Notchless-like WD40 re 52.3 19 0.00041 38.2 4.4 53 320-392 125-179 (480)
94 PF08450 SGL: SMP-30/Gluconola 51.7 56 0.0012 31.9 7.6 80 289-391 23-106 (246)
95 TIGR03866 PQQ_ABC_repeats PQQ- 50.8 2.4E+02 0.0052 27.3 21.8 30 199-228 163-195 (300)
96 COG1520 FOG: WD40-like repeat 48.0 2.9E+02 0.0063 28.9 12.8 136 200-389 65-205 (370)
97 KOG0266 WD40 repeat-containing 47.6 3.4E+02 0.0075 29.5 13.6 139 199-391 210-355 (456)
98 COG4257 Vgb Streptogramin lyas 45.9 1.1E+02 0.0024 31.6 8.4 83 290-390 85-167 (353)
99 PF03089 RAG2: Recombination a 45.4 2.9E+02 0.0062 28.7 11.3 109 259-387 163-281 (337)
100 cd00200 WD40 WD40 domain, foun 44.9 2.6E+02 0.0056 25.9 22.7 137 200-391 143-282 (289)
101 cd02849 CGTase_C_term Cgtase ( 43.8 1.8E+02 0.004 23.9 9.1 76 423-526 2-78 (81)
102 PF10670 DUF4198: Domain of un 43.8 1.5E+02 0.0033 28.1 9.1 75 425-517 137-211 (215)
103 KOG2437 Muskelin [Signal trans 40.7 15 0.00033 40.3 1.6 72 308-391 258-334 (723)
104 PF13088 BNR_2: BNR repeat-lik 40.6 29 0.00063 34.4 3.6 80 296-386 190-275 (275)
105 KOG0266 WD40 repeat-containing 40.1 5.2E+02 0.011 28.1 19.9 148 200-415 254-411 (456)
106 COG3490 Uncharacterized protei 39.1 1.2E+02 0.0025 31.5 7.5 105 291-414 94-203 (366)
107 TIGR03075 PQQ_enz_alc_DH PQQ-d 37.8 4E+02 0.0086 29.8 12.4 23 201-223 67-90 (527)
108 PF13540 RCC1_2: Regulator of 36.7 22 0.00048 23.4 1.4 21 371-392 8-28 (30)
109 PF02402 Lysis_col: Lysis prot 34.8 14 0.0003 27.0 0.1 32 7-38 2-33 (46)
110 KOG0271 Notchless-like WD40 re 34.8 1E+02 0.0023 32.9 6.5 82 119-224 104-191 (480)
111 PF07705 CARDB: CARDB; InterP 34.5 1.9E+02 0.0041 23.5 7.2 69 432-517 12-83 (101)
112 TIGR02608 delta_60_rpt delta-6 34.0 31 0.00067 26.5 2.0 41 314-360 4-44 (55)
113 KOG0285 Pleiotropic regulator 33.5 5.8E+02 0.013 27.3 11.6 92 212-355 215-309 (460)
114 cd00216 PQQ_DH Dehydrogenases 32.2 7.1E+02 0.015 27.3 14.9 26 200-225 58-86 (488)
115 PF07433 DUF1513: Protein of u 30.1 2E+02 0.0044 29.9 7.8 36 99-134 28-65 (305)
116 PF12768 Rax2: Cortical protei 29.7 2.5E+02 0.0054 28.8 8.4 104 263-388 1-108 (281)
117 PF00868 Transglut_N: Transglu 29.2 2.6E+02 0.0055 24.7 7.4 22 492-516 94-115 (118)
118 PF13088 BNR_2: BNR repeat-lik 28.8 5.6E+02 0.012 25.0 11.9 16 193-208 260-275 (275)
119 PF14870 PSII_BNR: Photosynthe 28.4 6.8E+02 0.015 25.9 16.3 78 293-388 127-204 (302)
120 KOG1036 Mitotic spindle checkp 28.3 1.6E+02 0.0035 30.5 6.5 48 289-355 117-165 (323)
121 PF01436 NHL: NHL repeat; Int 28.1 1.2E+02 0.0025 19.5 3.7 15 195-209 3-18 (28)
122 KOG0322 G-protein beta subunit 28.0 2.5E+02 0.0054 28.8 7.6 61 307-390 249-313 (323)
123 KOG0272 U4/U6 small nuclear ri 27.1 6.7E+02 0.014 27.3 11.0 110 201-366 312-426 (459)
124 KOG0268 Sof1-like rRNA process 27.0 2.1E+02 0.0045 30.6 7.1 131 203-391 158-293 (433)
125 TIGR03075 PQQ_enz_alc_DH PQQ-d 26.7 3.3E+02 0.0071 30.5 9.3 83 290-388 81-172 (527)
126 PRK10397 lipoprotein; Provisio 25.6 85 0.0019 28.3 3.5 34 11-44 3-45 (137)
127 PF05096 Glu_cyclase_2: Glutam 25.0 5E+02 0.011 26.5 9.4 101 202-355 54-159 (264)
128 PRK13733 conjugal transfer pro 24.4 52 0.0011 31.2 2.0 21 7-27 2-22 (171)
129 TIGR02276 beta_rpt_yvtn 40-res 24.0 1.7E+02 0.0037 19.8 4.3 25 205-229 5-31 (42)
130 PF03088 Str_synth: Strictosid 23.7 1.2E+02 0.0027 25.5 4.0 46 56-115 7-53 (89)
131 PF08139 LPAM_1: Prokaryotic m 23.5 78 0.0017 20.4 2.1 13 14-26 13-25 (25)
132 COG2706 3-carboxymuconate cycl 23.5 5.5E+02 0.012 27.2 9.5 87 44-159 189-325 (346)
133 PRK11443 lipoprotein; Provisio 23.2 45 0.00098 30.0 1.4 31 11-41 3-36 (124)
134 PF03089 RAG2: Recombination a 22.7 1.8E+02 0.0039 30.1 5.6 82 306-392 83-175 (337)
135 KOG2055 WD40 repeat protein [G 21.5 1.1E+03 0.024 26.0 12.9 157 200-425 265-428 (514)
136 PF10633 NPCBM_assoc: NPCBM-as 21.1 3.1E+02 0.0068 21.8 5.9 70 436-516 2-74 (78)
137 KOG1517 Guanine nucleotide bin 21.0 8.5E+02 0.019 29.9 11.2 141 201-390 1175-1324(1387)
138 PLN02919 haloacid dehalogenase 20.9 1.5E+03 0.033 27.8 14.0 30 195-224 741-774 (1057)
139 PF11153 DUF2931: Protein of u 20.3 90 0.002 30.4 3.0 31 10-40 2-33 (216)
No 1
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=100.00 E-value=3.3e-42 Score=339.47 Aligned_cols=198 Identities=44% Similarity=0.791 Sum_probs=178.8
Q ss_pred eeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccCCcccccceec
Q 042680 49 MHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLS 128 (530)
Q Consensus 49 ~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l 128 (530)
|||+|+ ++|||++||+++.++|++.||+| +||.+ +.++..+.||.+|+.+||+.+++++++...++.||+++++|
T Consensus 1 mh~~~~-~~~~v~~~d~t~~g~s~~~~~~~--~c~~~--~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L 75 (243)
T PF07250_consen 1 MHMALL-HNNKVIMFDRTNFGPSNISLPDG--RCRDN--PEDNALKFDGPAHSVEYDPNTNTFRPLTVQTDTFCSGGAFL 75 (243)
T ss_pred CeEeEc-cCCEEEEEeCCCcccccccCCCC--ccccC--ccccccccCceEEEEEEecCCCcEEeccCCCCCcccCcCCC
Confidence 899999 99999999999999999999999 99986 77788899999999999999999999999999999999999
Q ss_pred cCCcEE-------------------------------------------EccCCeEEEeccCCCCcEEEEcCCCCCCCce
Q 042680 129 ADGRLV-------------------------------------------MLSDGSFLVYGGRDAFSYEYVPVEKESNKAA 165 (530)
Q Consensus 129 ~dG~l~-------------------------------------------~L~dG~v~VvGG~~~~s~E~yP~~~~~~~~~ 165 (530)
+||+++ +|+||+|+|+||+.++++|+||+... ....
T Consensus 76 ~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~-~~~~ 154 (243)
T PF07250_consen 76 PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGP-GPGP 154 (243)
T ss_pred CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccC-CCCc
Confidence 999999 99999999999999999999976421 2345
Q ss_pred EEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEe
Q 042680 166 IAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSV 245 (530)
Q Consensus 166 ~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~sv 245 (530)
..+++|.++.+. .++|+|||++++|||+||+++++.+++||+++|++++.+|+||++.|+||.+|++|
T Consensus 155 ~~~~~l~~~~~~------------~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssv 222 (243)
T PF07250_consen 155 VTLPFLSQTSDT------------LPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSV 222 (243)
T ss_pred eeeecchhhhcc------------CccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCCCceecCCCcceE
Confidence 566777655432 46899999999999999999999999999999999889999999999999999999
Q ss_pred eccC--CCCCCCCCCCCcEEEEecC
Q 042680 246 LLPL--YLPRDTYKPVDAEVLICGG 268 (530)
Q Consensus 246 mlpl--~~~~~~~~~~~gkI~v~GG 268 (530)
|||| ++ .+ .+..+|+||||
T Consensus 223 mLPl~~~~---~~-~~~~evlvCGG 243 (243)
T PF07250_consen 223 MLPLTDTP---PN-NYTAEVLVCGG 243 (243)
T ss_pred EecCccCC---CC-CCCeEEEEeCC
Confidence 9999 54 23 36999999998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8.3e-33 Score=305.24 Aligned_cols=255 Identities=22% Similarity=0.304 Sum_probs=203.9
Q ss_pred CCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccCCcccccceeccCCcEEE
Q 042680 56 KTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVM 135 (530)
Q Consensus 56 ~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~ 135 (530)
..++++++||.... + ++....++|||.+++|..++.|+.++|..++.
T Consensus 283 ~~~~l~~vGG~~~~--------~-----------------~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~-------- 329 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQ--------G-----------------QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVA-------- 329 (571)
T ss_pred CCCeEEEECCCCCC--------C-----------------cccceeEEecCCcCcEeecCCCCcccccccEE--------
Confidence 36889999987531 1 13467899999999999999999888876664
Q ss_pred ccCCeEEEeccCC-C----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEE
Q 042680 136 LSDGSFLVYGGRD-A----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVF 209 (530)
Q Consensus 136 L~dG~v~VvGG~~-~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~ 209 (530)
..+|+|||+||++ + .++|+| |.++ +|....||.. +|.. +.++..+|+||++
T Consensus 330 ~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~---~W~~~a~M~~-----------~R~~---------~~v~~l~g~iYav 386 (571)
T KOG4441|consen 330 VLNGKLYVVGGYDSGSDRLSSVERYDPRTN---QWTPVAPMNT-----------KRSD---------FGVAVLDGKLYAV 386 (571)
T ss_pred EECCEEEEEccccCCCcccceEEEecCCCC---ceeccCCccC-----------cccc---------ceeEEECCEEEEE
Confidence 3499999999999 3 479999 9986 5666566642 2323 4578889999999
Q ss_pred eCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccc
Q 042680 210 ANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKR 282 (530)
Q Consensus 210 Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 282 (530)
||. ++|+|||.+|+|. .+++|+. .|. +.++.. .+++||++||.+...
T Consensus 387 GG~dg~~~l~svE~YDp~~~~W~-~va~m~~-~r~----~~gv~~-----------~~g~iYi~GG~~~~~--------- 440 (571)
T KOG4441|consen 387 GGFDGEKSLNSVECYDPVTNKWT-PVAPMLT-RRS----GHGVAV-----------LGGKLYIIGGGDGSS--------- 440 (571)
T ss_pred eccccccccccEEEecCCCCccc-ccCCCCc-cee----eeEEEE-----------ECCEEEEEcCcCCCc---------
Confidence 994 6999999999999 8998874 333 333311 589999999986321
Q ss_pred ccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE
Q 042680 283 FVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA 361 (530)
Q Consensus 283 ~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt 361 (530)
..++++++|||. +++|+.. +|+.+|.++.++++ +|+||++||.+ | .....++|.|||.++ +|+
T Consensus 441 --~~l~sve~YDP~--t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~-~-------~~~~~~VE~ydp~~~---~W~ 504 (571)
T KOG4441|consen 441 --NCLNSVECYDPE--TNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFD-G-------TSALSSVERYDPETN---QWT 504 (571)
T ss_pred --cccceEEEEcCC--CCceeecCCcccccccceEEEE-CCEEEEECCcc-C-------CCccceEEEEcCCCC---cee
Confidence 267899999998 5999998 99999999998887 99999999987 2 223557999999999 999
Q ss_pred EecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCCCc
Q 042680 362 ELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPE 418 (530)
Q Consensus 362 ~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~~~ 418 (530)
.+++|+.+|..++++++ ++++|+.||.... .+ ..+||+|+|..-.+.
T Consensus 505 ~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~------~~--l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN------NN--LNTVECYDPETDTWT 551 (571)
T ss_pred EcccCccccccccEEEE--CCEEEEEecccCc------cc--cceeEEcCCCCCcee
Confidence 99999999999999988 9999999995432 23 467999999886543
No 3
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=100.00 E-value=3.2e-33 Score=239.50 Aligned_cols=99 Identities=26% Similarity=0.392 Sum_probs=88.8
Q ss_pred cccCCCCceeccCCC-CccccCCEEEEEEEcCCCCccceEEEEEEcCCccccCCCCCcceEEeeeeeeecccCCCceEEE
Q 042680 418 EYAALRPAILEDQSD-KAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVV 496 (530)
Q Consensus 418 ~~~~~RP~i~~~~~p-~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~ 496 (530)
|+++.||+|+++ | .+++||++|+|+++. .+.+|+|+|++|+||++|||||+|+|+++.. . +.+++
T Consensus 1 g~~a~RP~I~~~--p~~~i~yG~~f~v~~~~------~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~~-----~-~~~~~ 66 (101)
T cd02851 1 GTLASRPVITSA--STQTAKVGDTITVSTDS------PISSASLVRYGSATHTVNTDQRRIPLTLFSV-----G-GNSYS 66 (101)
T ss_pred CCCCCCCeeccC--CccccccCCEEEEEEec------cceEEEEEecccccccccCCccEEEeeeEec-----C-CCEEE
Confidence 356789999999 8 899999999999873 3799999999999999999999999999752 2 35778
Q ss_pred EEcCCCCCcCCCcceEEEEE-cCCcCcccEEEEeC
Q 042680 497 VAAPPTSALAPPGYYLLSVV-NQGIPSHSIWFHLK 530 (530)
Q Consensus 497 v~~P~~~~v~ppG~ymlfv~-~~gvPS~~~~v~i~ 530 (530)
+++|+|++|+|||||||||+ ++||||+|+||+|+
T Consensus 67 v~~P~n~~vaPPGyYmLFvv~~~GvPS~a~wV~i~ 101 (101)
T cd02851 67 VQIPSDPGVALPGYYMLFVMNSAGVPSVAKTIRIT 101 (101)
T ss_pred EEcCCCCCcCCCcCeEEEEECCCCcccccEEEEeC
Confidence 88899999999999999999 59999999999985
No 4
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=100.00 E-value=3.7e-33 Score=239.05 Aligned_cols=97 Identities=41% Similarity=0.730 Sum_probs=68.4
Q ss_pred CCceeccCCCCccccCCEEEEEEEcCCCCccceEEEEEEcCCccccCCCCCcceEEeeeeeeecccCCCceEEEEEcCCC
Q 042680 423 RPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPT 502 (530)
Q Consensus 423 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~ 502 (530)
||+|+++ |..+.||++|+|+++.++ ..++.+|+|+|++|+|||+|||||+|+|++... +++++++++|+|
T Consensus 1 RP~i~~~--p~~i~yg~~~tv~~~~~~--~~~~~~v~L~~~~~~THs~~~~QR~v~L~~~~~------~~~~~~v~~P~~ 70 (98)
T PF09118_consen 1 RPVITSA--PTTIKYGQTFTVTVTVPS--AASIVKVSLVRPGFVTHSFNMGQRMVELEFVSG------GGNTVTVTAPPN 70 (98)
T ss_dssp ---EEES---SEEETT-EEEEEE--SS-----ESEEEEEE--EEETTB-SS-EEEEE-EEEE------SSSEEEEE--S-
T ss_pred CCccccC--CCeEecCCEEEEEEECCC--ccceEEEEEEeCCcccccccCCCCEEeeeeecC------CCCEEEEECCCC
Confidence 9999998 999999999999998653 347899999999999999999999999999542 257999999999
Q ss_pred CCcCCCcceEEEEEc-CCcCcccEEEEe
Q 042680 503 SALAPPGYYLLSVVN-QGIPSHSIWFHL 529 (530)
Q Consensus 503 ~~v~ppG~ymlfv~~-~gvPS~~~~v~i 529 (530)
++|+|||||||||++ +||||+|+||+|
T Consensus 71 ~~vaPPG~YmLFvv~~~GvPS~a~wV~v 98 (98)
T PF09118_consen 71 PNVAPPGYYMLFVVNDDGVPSVAKWVQV 98 (98)
T ss_dssp TTTS-SEEEEEEEEETTS-B---EEEEE
T ss_pred CccCCCcCEEEEEEcCCCcccccEEEEC
Confidence 999999999999999 999999999997
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=287.35 Aligned_cols=254 Identities=20% Similarity=0.266 Sum_probs=206.0
Q ss_pred cccCCCCCCCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEE
Q 042680 25 AAAAPAGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFY 104 (530)
Q Consensus 25 ~~~~~~~~~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~y 104 (530)
...+.+++..++|..+..+..-+..|.+.. .+|+||++||.+.+ . +...++++|
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~---------~----------------~~l~~ve~Y 354 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSG---------S----------------DRLSSVERY 354 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCC---------C----------------cccceEEEe
Confidence 344567777899999988887788777777 79999999998631 0 135789999
Q ss_pred eCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccC
Q 042680 105 DYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLE 179 (530)
Q Consensus 105 Dp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~ 179 (530)
||.+|+|+++++|..++|..++. ++ +|.||++||+++ .++|+| |.++ +|....||+..
T Consensus 355 D~~~~~W~~~a~M~~~R~~~~v~-------~l-~g~iYavGG~dg~~~l~svE~YDp~~~---~W~~va~m~~~------ 417 (571)
T KOG4441|consen 355 DPRTNQWTPVAPMNTKRSDFGVA-------VL-DGKLYAVGGFDGEKSLNSVECYDPVTN---KWTPVAPMLTR------ 417 (571)
T ss_pred cCCCCceeccCCccCccccceeE-------EE-CCEEEEEeccccccccccEEEecCCCC---cccccCCCCcc------
Confidence 99999999999999888876664 34 999999999986 479999 9985 78888888541
Q ss_pred CCCCCCccccccCCccceEEEecCCcEEEEeC--------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCC
Q 042680 180 RPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN--------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYL 251 (530)
Q Consensus 180 ~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg--------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~ 251 (530)
| +-|..+..+|+||++|| +++|+|||.+|+|. .+|+|+. +|.+ .|.++
T Consensus 418 -------r-------~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~-~~~~M~~-~R~~--~g~a~------ 473 (571)
T KOG4441|consen 418 -------R-------SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT-LIAPMNT-RRSG--FGVAV------ 473 (571)
T ss_pred -------e-------eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee-ecCCccc-cccc--ceEEE------
Confidence 1 34778889999999999 47999999999999 8999984 4554 24443
Q ss_pred CCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCC
Q 042680 252 PRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGA 330 (530)
Q Consensus 252 ~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~ 330 (530)
++++||++||.+. . ..+.++|+|||. +++|+.. +|+.+|..+..+++ +|++|++||.
T Consensus 474 -------~~~~iYvvGG~~~-~-----------~~~~~VE~ydp~--~~~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~ 531 (571)
T KOG4441|consen 474 -------LNGKIYVVGGFDG-T-----------SALSSVERYDPE--TNQWTMVAPMTSPRSAVGVVVL-GGKLYAVGGF 531 (571)
T ss_pred -------ECCEEEEECCccC-C-----------CccceEEEEcCC--CCceeEcccCccccccccEEEE-CCEEEEEecc
Confidence 4899999999873 1 246779999998 5999998 89999988887776 9999999996
Q ss_pred CCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCccccccee
Q 042680 331 DLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANL 378 (530)
Q Consensus 331 ~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~L 378 (530)
. |. .-+.++|+|||.++ +|+...++...|...+++++
T Consensus 532 ~-~~-------~~l~~ve~ydp~~d---~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 532 D-GN-------NNLNTVECYDPETD---TWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred c-Cc-------cccceeEEcCCCCC---ceeeCCCccccccCcceEEe
Confidence 5 22 23668999999999 99999888888887776665
No 6
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=6.7e-30 Score=282.33 Aligned_cols=244 Identities=12% Similarity=0.125 Sum_probs=180.5
Q ss_pred eEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC-----CcEEEE-cCCCCCCCceEEeccccc
Q 042680 100 HSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA-----FSYEYV-PVEKESNKAAIAFPFLFE 173 (530)
Q Consensus 100 ~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~-----~s~E~y-P~~~~~~~~~~~~p~l~~ 173 (530)
..++|||.+++|+.++.|+..++..+++ ++ ||+|||+||.+. .++|+| |.++ .|....||. .
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a-------~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n---~W~~~~~m~-~ 340 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASA-------IV-DNEIIIAGGYNFNNPSLNKVYKINIENK---IHVELPPMI-K 340 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEE-------EE-CCEEEEEcCCCCCCCccceEEEEECCCC---eEeeCCCCc-c
Confidence 4689999999999999998666543332 23 999999999741 468999 9875 465554443 1
Q ss_pred cccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEee
Q 042680 174 TQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVL 246 (530)
Q Consensus 174 t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svm 246 (530)
+|. -+..+..+|+||++||. ++|+|||.+|+|. .+++||. +|.. .++++
T Consensus 341 ----------~R~---------~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~-~~~~mp~-~r~~--~~~~~- 396 (557)
T PHA02713 341 ----------NRC---------RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK-MLPDMPI-ALSS--YGMCV- 396 (557)
T ss_pred ----------hhh---------ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE-ECCCCCc-cccc--ccEEE-
Confidence 121 24567889999999994 5899999999999 7999984 4443 12333
Q ss_pred ccCCCCCCCCCCCCcEEEEecCccCCc-ccccc-cc----ccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeee
Q 042680 247 LPLYLPRDTYKPVDAEVLICGGSVREG-LYLGE-EE----KRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLL 319 (530)
Q Consensus 247 lpl~~~~~~~~~~~gkI~v~GG~~~~~-~~~~~-~~----~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvL 319 (530)
++++||++||.+... +.... .+ ......++++++|||. +++|+.. +|+.+|..++++++
T Consensus 397 ------------~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~--td~W~~v~~m~~~r~~~~~~~~ 462 (557)
T PHA02713 397 ------------LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV--NNIWETLPNFWTGTIRPGVVSH 462 (557)
T ss_pred ------------ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCC--CCeEeecCCCCcccccCcEEEE
Confidence 489999999975210 00000 00 0001136789999998 4999987 99999999998887
Q ss_pred cCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC-CCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccc
Q 042680 320 PNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA-PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEF 398 (530)
Q Consensus 320 pdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t-~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~ 398 (530)
+|+|||+||.+ +.. .-...+|+|||++ + +|+.+++|+.+|..|+++++ ||+|||+||...
T Consensus 463 -~~~IYv~GG~~-~~~------~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~------ 523 (557)
T PHA02713 463 -KDDIYVVCDIK-DEK------NVKTCIFRYNTNTYN---GWELITTTESRLSALHTILH--DNTIMMLHCYES------ 523 (557)
T ss_pred -CCEEEEEeCCC-CCC------ccceeEEEecCCCCC---CeeEccccCcccccceeEEE--CCEEEEEeeecc------
Confidence 99999999975 211 1123579999999 9 99999999999999999998 999999999642
Q ss_pred cCCCCcceEEEEcCCCCCC
Q 042680 399 AKFPTELRLEKFTPPYLAP 417 (530)
Q Consensus 399 ~~~~t~~~vE~y~Ppyl~~ 417 (530)
..++|+|+|..-.+
T Consensus 524 -----~~~~e~yd~~~~~W 537 (557)
T PHA02713 524 -----YMLQDTFNVYTYEW 537 (557)
T ss_pred -----eeehhhcCcccccc
Confidence 12689999988654
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=5.4e-28 Score=267.20 Aligned_cols=236 Identities=9% Similarity=0.105 Sum_probs=177.5
Q ss_pred CCCCCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCC
Q 042680 30 AGGFLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKN 109 (530)
Q Consensus 30 ~~~~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~ 109 (530)
++...++|..+..++.-+.-|.+.. -+++||++||...+ + . .....++|||.++
T Consensus 277 yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~--------~--~---------------~~~~v~~Yd~~~n 330 (557)
T PHA02713 277 YNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFN--------N--P---------------SLNKVYKINIENK 330 (557)
T ss_pred EeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCC--------C--C---------------ccceEEEEECCCC
Confidence 4556688999877666666666665 69999999996421 0 0 1356889999999
Q ss_pred cEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCC
Q 042680 110 AVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNP 184 (530)
Q Consensus 110 ~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~ 184 (530)
+|+.+++|+..++..+++ ..+|+|||+||.++ .++|+| |.++ +|....||.. +
T Consensus 331 ~W~~~~~m~~~R~~~~~~--------~~~g~IYviGG~~~~~~~~sve~Ydp~~~---~W~~~~~mp~-----------~ 388 (557)
T PHA02713 331 IHVELPPMIKNRCRFSLA--------VIDDTIYAIGGQNGTNVERTIECYTMGDD---KWKMLPDMPI-----------A 388 (557)
T ss_pred eEeeCCCCcchhhceeEE--------EECCEEEEECCcCCCCCCceEEEEECCCC---eEEECCCCCc-----------c
Confidence 999999998766655443 33999999999864 469999 9885 5766555532 1
Q ss_pred CccccccCCccceEEEecCCcEEEEeCc-------------------------eEEEEeCCCCeEEEEccCCCCCCCccC
Q 042680 185 KGRFRLENNLYPFVYLLPDGNVYVFANN-------------------------RSVVHDPKANKIIREFPQLPGGARSYP 239 (530)
Q Consensus 185 ~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------------------------~~e~yDp~tn~w~~~~p~mp~~~r~yp 239 (530)
+. -+..+..+|+||++||. ++|+|||.+|+|+ .+++|+. +|..
T Consensus 389 r~---------~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~-~v~~m~~-~r~~- 456 (557)
T PHA02713 389 LS---------SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE-TLPNFWT-GTIR- 456 (557)
T ss_pred cc---------cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe-ecCCCCc-cccc-
Confidence 11 23456779999999984 3789999999999 8999984 3443
Q ss_pred CCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeee
Q 042680 240 ATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVL 318 (530)
Q Consensus 240 ~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vv 318 (530)
.++++ .+++|||+||.+... ...+.+|+|||.. +++|+.. +|+.+|..+++++
T Consensus 457 -~~~~~-------------~~~~IYv~GG~~~~~-----------~~~~~ve~Ydp~~-~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 457 -PGVVS-------------HKDDIYVVCDIKDEK-----------NVKTCIFRYNTNT-YNGWELITTTESRLSALHTIL 510 (557)
T ss_pred -CcEEE-------------ECCEEEEEeCCCCCC-----------ccceeEEEecCCC-CCCeeEccccCcccccceeEE
Confidence 23333 489999999975211 1234689999982 2699998 9999999999888
Q ss_pred ecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCC
Q 042680 319 LPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPT 366 (530)
Q Consensus 319 LpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~ 366 (530)
+ +|+||++||.. | ..++|+|||.++ +|+.+++-
T Consensus 511 ~-~~~iyv~Gg~~-~----------~~~~e~yd~~~~---~W~~~~~~ 543 (557)
T PHA02713 511 H-DNTIMMLHCYE-S----------YMLQDTFNVYTY---EWNHICHQ 543 (557)
T ss_pred E-CCEEEEEeeec-c----------eeehhhcCcccc---cccchhhh
Confidence 7 99999999976 2 126899999999 99988765
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.95 E-value=1.5e-26 Score=241.00 Aligned_cols=230 Identities=16% Similarity=0.230 Sum_probs=156.1
Q ss_pred EEEEeC--CCCcEEEccccC-CcccccceeccCCcEEEccCCeEEEeccCCC----------CcEEEE-cCCCCCCCceE
Q 042680 101 SIFYDY--NKNAVKALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----------FSYEYV-PVEKESNKAAI 166 (530)
Q Consensus 101 ~~~yDp--~t~~w~~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----------~s~E~y-P~~~~~~~~~~ 166 (530)
.+.||+ .+++|+.++.|+ ..++..+++ ..||+|||+||.+. .++|+| |.++ +|..
T Consensus 31 ~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~--------~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~---~W~~ 99 (346)
T TIGR03547 31 WYKLDLKKPSKGWQKIADFPGGPRNQAVAA--------AIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN---SWQK 99 (346)
T ss_pred eEEEECCCCCCCceECCCCCCCCcccceEE--------EECCEEEEEeCCCCCCCCCcceecccEEEEECCCC---EEec
Confidence 457774 678999999987 455543332 33999999999742 368999 8875 4553
Q ss_pred EeccccccccccCCCCCCCccccccCCccceEEE-ecCCcEEEEeCc---------------------------------
Q 042680 167 AFPFLFETQDFLERPGNPKGRFRLENNLYPFVYL-LPDGNVYVFANN--------------------------------- 212 (530)
Q Consensus 167 ~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~l-lp~G~lfv~Gg~--------------------------------- 212 (530)
..+.+ ++.++ .+..+ +.+|+||++||.
T Consensus 100 ~~~~~------------p~~~~-------~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T TIGR03547 100 LDTRS------------PVGLL-------GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQP 160 (346)
T ss_pred CCCCC------------CCccc-------ceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCC
Confidence 32211 12222 23334 679999999983
Q ss_pred --------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccccc
Q 042680 213 --------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFV 284 (530)
Q Consensus 213 --------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~ 284 (530)
++|+|||.+|+|. .+++||..+|. ++++.. ++++|||+||.....
T Consensus 161 ~~~~~~~~~v~~YDp~t~~W~-~~~~~p~~~r~----~~~~~~-----------~~~~iyv~GG~~~~~----------- 213 (346)
T TIGR03547 161 PEDYFWNKNVLSYDPSTNQWR-NLGENPFLGTA----GSAIVH-----------KGNKLLLINGEIKPG----------- 213 (346)
T ss_pred hhHcCccceEEEEECCCCcee-ECccCCCCcCC----CceEEE-----------ECCEEEEEeeeeCCC-----------
Confidence 5799999999999 78988842333 222211 489999999974211
Q ss_pred ccCCcEEEEEcCCCCCcceec-CCCCccc-------cceeeeecCCeEEEEcCCCCCCC------C--ccc-CCCCCccc
Q 042680 285 NALDDCARMVVTSPNPEWKIE-KMPAPRT-------MADGVLLPNGEVLIINGADLGSG------G--WHC-ADKPSLKP 347 (530)
Q Consensus 285 ~a~~s~~~~dp~~~~~~W~~~-~M~~~R~-------~~~~vvLpdG~VlViGG~~~g~~------g--~~~-~~~p~~~~ 347 (530)
..+..+++|++....++|+.. +|+.+|. .+.++++ +|+|||+||.+.... + +.. ....+.++
T Consensus 214 ~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (346)
T TIGR03547 214 LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSS 292 (346)
T ss_pred ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEe
Confidence 112345667764335799987 8988763 2334554 999999999752100 0 000 01113468
Q ss_pred EEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCC
Q 042680 348 MLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDND 393 (530)
Q Consensus 348 eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~ 393 (530)
|+|||+++ +|+.+++|+.+|.+|+++++ +|+|||+||....
T Consensus 293 e~yd~~~~---~W~~~~~lp~~~~~~~~~~~--~~~iyv~GG~~~~ 333 (346)
T TIGR03547 293 EVYALDNG---KWSKVGKLPQGLAYGVSVSW--NNGVLLIGGENSG 333 (346)
T ss_pred eEEEecCC---cccccCCCCCCceeeEEEEc--CCEEEEEeccCCC
Confidence 99999999 99999999999999887666 9999999997543
No 9
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.94 E-value=2.1e-25 Score=235.64 Aligned_cols=243 Identities=16% Similarity=0.206 Sum_probs=159.0
Q ss_pred EEEEeCC--CCcEEEccccC-CcccccceeccCCcEEEccCCeEEEeccCCC----------CcEEEE-cCCCCCCCceE
Q 042680 101 SIFYDYN--KNAVKALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----------FSYEYV-PVEKESNKAAI 166 (530)
Q Consensus 101 ~~~yDp~--t~~w~~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----------~s~E~y-P~~~~~~~~~~ 166 (530)
.+.||+. +++|++++.++ ..++..+++ .+ +++|||+||... .++|+| |.++ +|..
T Consensus 52 ~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v-------~~-~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n---~W~~ 120 (376)
T PRK14131 52 WYKLDLNAPSKGWTKIAAFPGGPREQAVAA-------FI-DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN---SWQK 120 (376)
T ss_pred EEEEECCCCCCCeEECCcCCCCCcccceEE-------EE-CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC---EEEe
Confidence 4567765 58899999885 344433322 23 999999999753 358899 8875 4554
Q ss_pred EeccccccccccCCCCCCCccccccCCccceEEEe-cCCcEEEEeCc---------------------------------
Q 042680 167 AFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLL-PDGNVYVFANN--------------------------------- 212 (530)
Q Consensus 167 ~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~ll-p~G~lfv~Gg~--------------------------------- 212 (530)
..+.. ++.+ +-+..++ .+|+||++||.
T Consensus 121 ~~~~~------------p~~~-------~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 121 LDTRS------------PVGL-------AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred CCCCC------------CCcc-------cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 33211 1112 1233344 79999999993
Q ss_pred --------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccccc
Q 042680 213 --------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFV 284 (530)
Q Consensus 213 --------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~ 284 (530)
.+++|||.+|+|. .+++||..+|. ++++.. .+++|||+||......
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~-~~~~~p~~~~~----~~a~v~-----------~~~~iYv~GG~~~~~~---------- 235 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWK-NAGESPFLGTA----GSAVVI-----------KGNKLWLINGEIKPGL---------- 235 (376)
T ss_pred hhhcCcCceEEEEECCCCeee-ECCcCCCCCCC----cceEEE-----------ECCEEEEEeeeECCCc----------
Confidence 4799999999999 78888742332 333211 4799999999642110
Q ss_pred ccCCcEE--EEEcCCCCCcceec-CCCCcccc-------ceeeeecCCeEEEEcCCCCCCC------C--cc-cCCCCCc
Q 042680 285 NALDDCA--RMVVTSPNPEWKIE-KMPAPRTM-------ADGVLLPNGEVLIINGADLGSG------G--WH-CADKPSL 345 (530)
Q Consensus 285 ~a~~s~~--~~dp~~~~~~W~~~-~M~~~R~~-------~~~vvLpdG~VlViGG~~~g~~------g--~~-~~~~p~~ 345 (530)
.+..+. +|||. +++|+.. +|+.+|.. +.++++.+|+|||+||...... | +. .....+.
T Consensus 236 -~~~~~~~~~~~~~--~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (376)
T PRK14131 236 -RTDAVKQGKFTGN--NLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSW 312 (376)
T ss_pred -CChhheEEEecCC--CcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCccee
Confidence 112233 34544 5899987 89988742 2223335999999999752100 0 00 0011234
Q ss_pred ccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCC
Q 042680 346 KPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPY 414 (530)
Q Consensus 346 ~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppy 414 (530)
.+|+|||+++ +|+.+++|+.+|.+|+++++ +|+|||+||..... .. ..+|++|.|.-
T Consensus 313 ~~e~yd~~~~---~W~~~~~lp~~r~~~~av~~--~~~iyv~GG~~~~~-----~~--~~~v~~~~~~~ 369 (376)
T PRK14131 313 SDEIYALVNG---KWQKVGELPQGLAYGVSVSW--NNGVLLIGGETAGG-----KA--VSDVTLLSWDG 369 (376)
T ss_pred ehheEEecCC---cccccCcCCCCccceEEEEe--CCEEEEEcCCCCCC-----cE--eeeEEEEEEcC
Confidence 6899999999 99999999999999986666 99999999964431 11 35788888863
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=8.3e-26 Score=245.91 Aligned_cols=192 Identities=12% Similarity=0.169 Sum_probs=151.7
Q ss_pred CCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc
Q 042680 138 DGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN 212 (530)
Q Consensus 138 dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~ 212 (530)
++.|||+||.+. .++++| |.++ .|....+|.. +|.. +..+..+|+||++||.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~---~W~~~~~m~~-----------~r~~---------~~~v~~~~~iYviGG~ 327 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISN---NWIPIPPMNS-----------PRLY---------ASGVPANNKLYVVGGL 327 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCC---EEEECCCCCc-----------hhhc---------ceEEEECCEEEEECCc
Confidence 899999999754 468999 9875 4655555421 1211 3456789999999993
Q ss_pred ----eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCC
Q 042680 213 ----RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALD 288 (530)
Q Consensus 213 ----~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~ 288 (530)
++|+|||.+|+|. .+|+||. +|... ++++ ++++||++||.+ + ..+
T Consensus 328 ~~~~sve~ydp~~n~W~-~~~~l~~-~r~~~--~~~~-------------~~g~IYviGG~~-~-------------~~~ 376 (480)
T PHA02790 328 PNPTSVERWFHGDAAWV-NMPSLLK-PRCNP--AVAS-------------INNVIYVIGGHS-E-------------TDT 376 (480)
T ss_pred CCCCceEEEECCCCeEE-ECCCCCC-CCccc--EEEE-------------ECCEEEEecCcC-C-------------CCc
Confidence 6899999999998 8999983 45431 2232 489999999974 1 125
Q ss_pred cEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCC
Q 042680 289 DCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD 367 (530)
Q Consensus 289 s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~ 367 (530)
++++|||. +++|+.. +|+.+|..+.++++ +|+|||+||. .|+|||+++ +|+.+++|+
T Consensus 377 ~ve~ydp~--~~~W~~~~~m~~~r~~~~~~~~-~~~IYv~GG~----------------~e~ydp~~~---~W~~~~~m~ 434 (480)
T PHA02790 377 TTEYLLPN--HDQWQFGPSTYYPHYKSCALVF-GRRLFLVGRN----------------AEFYCESSN---TWTLIDDPI 434 (480)
T ss_pred cEEEEeCC--CCEEEeCCCCCCccccceEEEE-CCEEEEECCc----------------eEEecCCCC---cEeEcCCCC
Confidence 68999998 4999998 99999999988876 9999999973 489999999 999999999
Q ss_pred CCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCC
Q 042680 368 IPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYL 415 (530)
Q Consensus 368 ~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl 415 (530)
.+|..|+++++ +|+|||+||.... .+ ..++|+|+|..-
T Consensus 435 ~~r~~~~~~v~--~~~IYviGG~~~~------~~--~~~ve~Yd~~~~ 472 (480)
T PHA02790 435 YPRDNPELIIV--DNKLLLIGGFYRG------SY--IDTIEVYNNRTY 472 (480)
T ss_pred CCccccEEEEE--CCEEEEECCcCCC------cc--cceEEEEECCCC
Confidence 99999998888 9999999996432 12 246999999863
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.93 E-value=1.9e-24 Score=223.49 Aligned_cols=266 Identities=15% Similarity=0.147 Sum_probs=178.3
Q ss_pred cchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEe-CCCC-cEEEccccCCcc
Q 042680 44 AGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYD-YNKN-AVKALKVQSDTW 121 (530)
Q Consensus 44 ~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yD-p~t~-~w~~l~~~~~~~ 121 (530)
-|++++-++++ ++++|++||.+.. +..+.++| +..|+....+|+ +..+ +|+.++.|+..+
T Consensus 2 ~~~~g~~~~~~--~~~l~v~GG~~~~--~~~~~~~g--------------~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r 63 (323)
T TIGR03548 2 LGVAGCYAGII--GDYILVAGGCNFP--EDPLAEGG--------------KKKNYKGIYIAKDENSNLKWVKDGQLPYEA 63 (323)
T ss_pred CceeeEeeeEE--CCEEEEeeccCCC--CCchhhCC--------------cEEeeeeeEEEecCCCceeEEEcccCCccc
Confidence 36778878876 8999999998642 11122221 112456666664 4433 799999998666
Q ss_pred cccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCc---eEEeccccccccccCCCCCCCccccccCC
Q 042680 122 CSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKA---AIAFPFLFETQDFLERPGNPKGRFRLENN 193 (530)
Q Consensus 122 ~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~---~~~~p~l~~t~d~~~~~~~~~~~~~~~~~ 193 (530)
+.++++ .+ +++|||+||.+. .++|.| +.++ .| |...+-|.. .+
T Consensus 64 ~~~~~~-------~~-~~~lyviGG~~~~~~~~~v~~~d~~~~---~w~~~~~~~~~lp~------------~~------ 114 (323)
T TIGR03548 64 AYGASV-------SV-ENGIYYIGGSNSSERFSSVYRITLDES---KEELICETIGNLPF------------TF------ 114 (323)
T ss_pred cceEEE-------EE-CCEEEEEcCCCCCCCceeEEEEEEcCC---ceeeeeeEcCCCCc------------Cc------
Confidence 544432 34 999999999864 468888 7654 34 233332211 11
Q ss_pred ccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEe
Q 042680 194 LYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLIC 266 (530)
Q Consensus 194 ~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~ 266 (530)
.-+..++.+|+||++||. ++++||+.+++|. .+++||..+|.. .+++. ++++|||+
T Consensus 115 -~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~~r~~---~~~~~------------~~~~iYv~ 177 (323)
T TIGR03548 115 -ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF-ELPDFPGEPRVQ---PVCVK------------LQNELYVF 177 (323)
T ss_pred -cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee-ECCCCCCCCCCc---ceEEE------------ECCEEEEE
Confidence 125567779999999993 6899999999998 798888545543 22221 47999999
Q ss_pred cCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCC---Ccc--ccceeeeecCCeEEEEcCCCCCCC-----
Q 042680 267 GGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMP---APR--TMADGVLLPNGEVLIINGADLGSG----- 335 (530)
Q Consensus 267 GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~---~~R--~~~~~vvLpdG~VlViGG~~~g~~----- 335 (530)
||.+.. ...++++|||.. ++|+.. +|+ .+| ..+.++++.+++|||+||.+....
T Consensus 178 GG~~~~-------------~~~~~~~yd~~~--~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 242 (323)
T TIGR03548 178 GGGSNI-------------AYTDGYKYSPKK--NQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVI 242 (323)
T ss_pred cCCCCc-------------cccceEEEecCC--CeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHh
Confidence 997521 123578999984 999987 663 333 334445556899999999752100
Q ss_pred Ccc-----------------cCCC--CCcccEEecCCCCCCCceEEecCCC-CCCcccccceecCCCeEEEcCCCCCC
Q 042680 336 GWH-----------------CADK--PSLKPMLYRPNAPEGQRFAELAPTD-IPRMYHSVANLLPDGKVFVGGSNDND 393 (530)
Q Consensus 336 g~~-----------------~~~~--p~~~~eiYDP~t~~g~~Wt~la~~~-~~R~yHS~a~LLpdGrVlv~GG~~~~ 393 (530)
.+. ..+. ...++|+|||.++ +|+.+++++ .+|..|+++++ |++||+.||....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~--~~~iyv~GG~~~p 315 (323)
T TIGR03548 243 DLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLLT--GNNIFSINGELKP 315 (323)
T ss_pred hhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC---eeeEcccccccccCchheEEE--CCEEEEEeccccC
Confidence 000 0000 1246899999999 999999887 68999988777 9999999997544
No 12
>PLN02153 epithiospecifier protein
Probab=99.93 E-value=9.7e-24 Score=219.86 Aligned_cols=285 Identities=13% Similarity=0.173 Sum_probs=184.5
Q ss_pred CCcEEEccCC----cchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCC
Q 042680 34 LGSWELISQN----AGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKN 109 (530)
Q Consensus 34 ~g~w~~~~~~----~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~ 109 (530)
.++|+.+... +.-+.-|.++. .+++||++||..... . . .....++||+.++
T Consensus 6 ~~~W~~~~~~~~~~P~pR~~h~~~~-~~~~iyv~GG~~~~~-------~--~---------------~~~~~~~yd~~~~ 60 (341)
T PLN02153 6 QGGWIKVEQKGGKGPGPRCSHGIAV-VGDKLYSFGGELKPN-------E--H---------------IDKDLYVFDFNTH 60 (341)
T ss_pred CCeEEEecCCCCCCCCCCCcceEEE-ECCEEEEECCccCCC-------C--c---------------eeCcEEEEECCCC
Confidence 5789998652 33466777776 689999999974210 0 0 1245889999999
Q ss_pred cEEEccccC--Cc-ccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCC
Q 042680 110 AVKALKVQS--DT-WCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERP 181 (530)
Q Consensus 110 ~w~~l~~~~--~~-~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~ 181 (530)
+|+.++.+. .+ .|.+++. +..+++|||+||.+. .++++| |.++ +|....++ .+..
T Consensus 61 ~W~~~~~~~~~p~~~~~~~~~-------~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~---~W~~~~~~-~~~~------ 123 (341)
T PLN02153 61 TWSIAPANGDVPRISCLGVRM-------VAVGTKLYIFGGRDEKREFSDFYSYDTVKN---EWTFLTKL-DEEG------ 123 (341)
T ss_pred EEEEcCccCCCCCCccCceEE-------EEECCEEEEECCCCCCCccCcEEEEECCCC---EEEEeccC-CCCC------
Confidence 999998763 22 2322221 233999999999753 368999 8875 45543332 1100
Q ss_pred CCCCccccccCCccceEEEecCCcEEEEeCc-------------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeecc
Q 042680 182 GNPKGRFRLENNLYPFVYLLPDGNVYVFANN-------------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLP 248 (530)
Q Consensus 182 ~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlp 248 (530)
.+..| +-|..+..+++|||+||. ++++||+++++|. .++++...+ .++.+.++..
T Consensus 124 -~p~~R-------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~-~l~~~~~~~--~~r~~~~~~~- 191 (341)
T PLN02153 124 -GPEAR-------TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV-QLPDPGENF--EKRGGAGFAV- 191 (341)
T ss_pred -CCCCc-------eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe-eCCCCCCCC--CCCCcceEEE-
Confidence 01112 235667789999999993 4689999999999 687653110 1222322211
Q ss_pred CCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCccccceeeeecCCeE
Q 042680 249 LYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTMADGVLLPNGEV 324 (530)
Q Consensus 249 l~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~~~~vvLpdG~V 324 (530)
++++|||+||.... +.. .+.....++.+++|||. +++|+.. .||.+|..+.++++ +++|
T Consensus 192 ----------~~~~iyv~GG~~~~-~~~---gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~~~~~~~-~~~i 254 (341)
T PLN02153 192 ----------VQGKIWVVYGFATS-ILP---GGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSVFAHAVV-GKYI 254 (341)
T ss_pred ----------ECCeEEEEeccccc-ccc---CCccceecCceEEEEcC--CCcEEeccccCCCCCCcceeeeEEE-CCEE
Confidence 47999999996421 100 00001125679999998 4999975 37899988888876 9999
Q ss_pred EEEcCCCCCC-CCcccCCCCCcccEEecCCCCCCCceEEec-----CCCCCCcccccceecCCCeEEEcCCCCC
Q 042680 325 LIINGADLGS-GGWHCADKPSLKPMLYRPNAPEGQRFAELA-----PTDIPRMYHSVANLLPDGKVFVGGSNDN 392 (530)
Q Consensus 325 lViGG~~~g~-~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la-----~~~~~R~yHS~a~LLpdGrVlv~GG~~~ 392 (530)
||+||..... .+......-...+++|||+++ +|+.+. +++..|.+|+++++--+++||+.||...
T Consensus 255 yv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~ 325 (341)
T PLN02153 255 IIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---VWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLP 325 (341)
T ss_pred EEECcccCCccccccccccccccEEEEEcCcc---EEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCC
Confidence 9999964100 000000111236899999999 999875 5666676667777655679999999754
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=2.8e-24 Score=233.90 Aligned_cols=200 Identities=13% Similarity=0.109 Sum_probs=152.0
Q ss_pred CCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccCCcccccceeccCCcEEE
Q 042680 56 KTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVM 135 (530)
Q Consensus 56 ~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~ 135 (530)
.+++||++||.+.. . ..+.+++|||.+++|.++++|+.+++..+++ +
T Consensus 270 ~~~~lyviGG~~~~-----------~---------------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-------~ 316 (480)
T PHA02790 270 VGEVVYLIGGWMNN-----------E---------------IHNNAIAVNYISNNWIPIPPMNSPRLYASGV-------P 316 (480)
T ss_pred ECCEEEEEcCCCCC-----------C---------------cCCeEEEEECCCCEEEECCCCCchhhcceEE-------E
Confidence 37899999986421 0 1256889999999999999998666544432 3
Q ss_pred ccCCeEEEeccCCC-CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeC--
Q 042680 136 LSDGSFLVYGGRDA-FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN-- 211 (530)
Q Consensus 136 L~dG~v~VvGG~~~-~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg-- 211 (530)
+ ||+||++||.+. .++|+| |.++ +|....||.. +| +-++.+..+|+||++||
T Consensus 317 ~-~~~iYviGG~~~~~sve~ydp~~n---~W~~~~~l~~-----------~r---------~~~~~~~~~g~IYviGG~~ 372 (480)
T PHA02790 317 A-NNKLYVVGGLPNPTSVERWFHGDA---AWVNMPSLLK-----------PR---------CNPAVASINNVIYVIGGHS 372 (480)
T ss_pred E-CCEEEEECCcCCCCceEEEECCCC---eEEECCCCCC-----------CC---------cccEEEEECCEEEEecCcC
Confidence 3 999999999854 579999 8875 5665555431 11 12556778999999999
Q ss_pred ---ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCC
Q 042680 212 ---NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALD 288 (530)
Q Consensus 212 ---~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~ 288 (530)
+.+|+|||.+|+|. .+|+|+. +|.. .++++ .+++||++||.
T Consensus 373 ~~~~~ve~ydp~~~~W~-~~~~m~~-~r~~--~~~~~-------------~~~~IYv~GG~------------------- 416 (480)
T PHA02790 373 ETDTTTEYLLPNHDQWQ-FGPSTYY-PHYK--SCALV-------------FGRRLFLVGRN------------------- 416 (480)
T ss_pred CCCccEEEEeCCCCEEE-eCCCCCC-cccc--ceEEE-------------ECCEEEEECCc-------------------
Confidence 35899999999999 7999873 4443 12222 48999999983
Q ss_pred cEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEe
Q 042680 289 DCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAEL 363 (530)
Q Consensus 289 s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~l 363 (530)
+++|||. +++|+.. +|+.+|..++++++ +|+|||+||.+.+ ....++|+|||+++ +|+.+
T Consensus 417 -~e~ydp~--~~~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~--------~~~~~ve~Yd~~~~---~W~~~ 477 (480)
T PHA02790 417 -AEFYCES--SNTWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRG--------SYIDTIEVYNNRTY---SWNIW 477 (480)
T ss_pred -eEEecCC--CCcEeEcCCCCCCccccEEEEE-CCEEEEECCcCCC--------cccceEEEEECCCC---eEEec
Confidence 3789997 5999997 99999999998886 9999999997521 12457999999999 99865
No 14
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=4.2e-24 Score=235.25 Aligned_cols=237 Identities=16% Similarity=0.207 Sum_probs=175.5
Q ss_pred eEEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCCC-----CcEEEE-cCCCCCCCceEEeccccc
Q 042680 100 HSIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA-----FSYEYV-PVEKESNKAAIAFPFLFE 173 (530)
Q Consensus 100 ~~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~-----~s~E~y-P~~~~~~~~~~~~p~l~~ 173 (530)
...+|++.+++|.++..++.+.|.+++ ..+++|||+||.+. .+++.| |.++ +|. ..|.+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~---~W~-~~~~~~~ 331 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYCFGSV---------VLNNVIYFIGGMNKNNLSVNSVVSYDTKTK---SWN-KVPELIY 331 (534)
T ss_pred eeeecchhhhhcccccCccccccceEE---------EECCEEEEECCCcCCCCeeccEEEEeCCCC---eee-ECCCCCc
Confidence 456789889999999776655554333 33999999999854 257888 8875 454 4443221
Q ss_pred cccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEee
Q 042680 174 TQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVL 246 (530)
Q Consensus 174 t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svm 246 (530)
+| +-+..+..+|+||++||. ++++||+.+++|. .+++||. +|.. .+++.
T Consensus 332 ----------~R---------~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~lp~-~r~~---~~~~~ 387 (534)
T PHA03098 332 ----------PR---------KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR-EEPPLIF-PRYN---PCVVN 387 (534)
T ss_pred ----------cc---------ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee-eCCCcCc-CCcc---ceEEE
Confidence 11 124567779999999994 5899999999998 7898883 4542 12221
Q ss_pred ccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEE
Q 042680 247 LPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVL 325 (530)
Q Consensus 247 lpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~Vl 325 (530)
.+++||++||...+. ..++++++|||. +++|+.. +||.+|..+.++++ +|+||
T Consensus 388 ------------~~~~iYv~GG~~~~~-----------~~~~~v~~yd~~--t~~W~~~~~~p~~r~~~~~~~~-~~~iy 441 (534)
T PHA03098 388 ------------VNNLIYVIGGISKND-----------ELLKTVECFSLN--TNKWSKGSPLPISHYGGCAIYH-DGKIY 441 (534)
T ss_pred ------------ECCEEEEECCcCCCC-----------cccceEEEEeCC--CCeeeecCCCCccccCceEEEE-CCEEE
Confidence 479999999964221 236789999998 4899997 99999998888876 99999
Q ss_pred EEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcc
Q 042680 326 IINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTEL 405 (530)
Q Consensus 326 ViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~ 405 (530)
|+||..... .......+++|||+++ +|+.+++++.+|..|+.+++ +|+|||.||..... + ..
T Consensus 442 v~GG~~~~~-----~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~------~--~~ 503 (534)
T PHA03098 442 VIGGISYID-----NIKVYNIVESYNPVTN---KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEY------Y--IN 503 (534)
T ss_pred EECCccCCC-----CCcccceEEEecCCCC---ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCc------c--cc
Confidence 999975211 0112345899999999 99999999999999988777 99999999975431 1 24
Q ss_pred eEEEEcCCCCCC
Q 042680 406 RLEKFTPPYLAP 417 (530)
Q Consensus 406 ~vE~y~Ppyl~~ 417 (530)
.+|+|+|..-.+
T Consensus 504 ~v~~yd~~~~~W 515 (534)
T PHA03098 504 EIEVYDDKTNTW 515 (534)
T ss_pred eeEEEeCCCCEE
Confidence 699999987543
No 15
>PLN02153 epithiospecifier protein
Probab=99.90 E-value=3.6e-22 Score=208.07 Aligned_cols=251 Identities=14% Similarity=0.122 Sum_probs=163.8
Q ss_pred CCCCcEEEccc----cCCcccccceeccCCcEEEccCCeEEEeccCCC------CcEEEE-cCCCCCCCceEEecccccc
Q 042680 106 YNKNAVKALKV----QSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA------FSYEYV-PVEKESNKAAIAFPFLFET 174 (530)
Q Consensus 106 p~t~~w~~l~~----~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~------~s~E~y-P~~~~~~~~~~~~p~l~~t 174 (530)
+...+|+.+.. ++..++..+++ ..+++|||+||... .++++| +.++ +|....++..
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~--------~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~-- 70 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIA--------VVGDKLYSFGGELKPNEHIDKDLYVFDFNTH---TWSIAPANGD-- 70 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEE--------EECCEEEEECCccCCCCceeCcEEEEECCCC---EEEEcCccCC--
Confidence 35677999976 44344332222 33899999999842 357888 7764 4554333211
Q ss_pred ccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCC----CCCccCCCce
Q 042680 175 QDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPG----GARSYPATGT 243 (530)
Q Consensus 175 ~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~----~~r~yp~~g~ 243 (530)
.++.+ .+-+..++.+++||++||. ++++||+++++|. .+++|+. .+|. +.
T Consensus 71 --------~p~~~------~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~~~p~~R~----~~ 131 (341)
T PLN02153 71 --------VPRIS------CLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWT-FLTKLDEEGGPEART----FH 131 (341)
T ss_pred --------CCCCc------cCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEE-EeccCCCCCCCCCce----ee
Confidence 01111 1235567789999999993 6899999999998 7887732 1333 22
Q ss_pred EeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCC---Cccccceeeee
Q 042680 244 SVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMP---APRTMADGVLL 319 (530)
Q Consensus 244 svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~---~~R~~~~~vvL 319 (530)
++.. .+++|||+||.+...... ....++++++|||. +++|+.. +|. .+|..+.++++
T Consensus 132 ~~~~-----------~~~~iyv~GG~~~~~~~~------~~~~~~~v~~yd~~--~~~W~~l~~~~~~~~~r~~~~~~~~ 192 (341)
T PLN02153 132 SMAS-----------DENHVYVFGGVSKGGLMK------TPERFRTIEAYNIA--DGKWVQLPDPGENFEKRGGAGFAVV 192 (341)
T ss_pred EEEE-----------ECCEEEEECCccCCCccC------CCcccceEEEEECC--CCeEeeCCCCCCCCCCCCcceEEEE
Confidence 2211 478999999975322110 01135678999998 4899986 553 78888887775
Q ss_pred cCCeEEEEcCCCCCC--CCcccCCCCCcccEEecCCCCCCCceEEecC---CCCCCcccccceecCCCeEEEcCCCCCCC
Q 042680 320 PNGEVLIINGADLGS--GGWHCADKPSLKPMLYRPNAPEGQRFAELAP---TDIPRMYHSVANLLPDGKVFVGGSNDNDG 394 (530)
Q Consensus 320 pdG~VlViGG~~~g~--~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~---~~~~R~yHS~a~LLpdGrVlv~GG~~~~~ 394 (530)
+|+|||+||..... .|. .......+++|||.++ +|+.++. ++.+|..|+++++ +++|||.||.....
T Consensus 193 -~~~iyv~GG~~~~~~~gG~--~~~~~~~v~~yd~~~~---~W~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~ 264 (341)
T PLN02153 193 -QGKIWVVYGFATSILPGGK--SDYESNAVQFFDPASG---KWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPD 264 (341)
T ss_pred -CCeEEEEeccccccccCCc--cceecCceEEEEcCCC---cEEeccccCCCCCCcceeeeEEE--CCEEEEECcccCCc
Confidence 99999999964210 110 1111346899999999 9998864 6788999998777 99999999964211
Q ss_pred ---CccccCCCCcceEEEEcCCCCCC
Q 042680 395 ---YFEFAKFPTELRLEKFTPPYLAP 417 (530)
Q Consensus 395 ---~~~~~~~~t~~~vE~y~Ppyl~~ 417 (530)
....+.+ ...+++|+|.....
T Consensus 265 ~~~~~~~~~~--~n~v~~~d~~~~~W 288 (341)
T PLN02153 265 LKGHLGPGTL--SNEGYALDTETLVW 288 (341)
T ss_pred cccccccccc--cccEEEEEcCccEE
Confidence 0000112 23699999987643
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.90 E-value=1.7e-22 Score=222.49 Aligned_cols=238 Identities=14% Similarity=0.139 Sum_probs=169.0
Q ss_pred CCCcEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEE
Q 042680 33 FLGSWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVK 112 (530)
Q Consensus 33 ~~g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~ 112 (530)
...+|..+.. ...+..|.++. .++++|++||.+.. + . +....+.||+.+++|+
T Consensus 272 ~~~~~~~~~~-~~~~~~~~~~~-~~~~lyv~GG~~~~--------~--~---------------~~~~v~~yd~~~~~W~ 324 (534)
T PHA03098 272 PLSEINTIID-IHYVYCFGSVV-LNNVIYFIGGMNKN--------N--L---------------SVNSVVSYDTKTKSWN 324 (534)
T ss_pred hhhhcccccC-ccccccceEEE-ECCEEEEECCCcCC--------C--C---------------eeccEEEEeCCCCeee
Confidence 3456776643 23344445555 69999999997531 0 0 1245789999999999
Q ss_pred EccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCcc
Q 042680 113 ALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGR 187 (530)
Q Consensus 113 ~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~ 187 (530)
.++.|+..++..+++ ..+|+|||+||.+. .++|+| |.++ +|....|+.. +
T Consensus 325 ~~~~~~~~R~~~~~~--------~~~~~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~lp~-----------~--- 379 (534)
T PHA03098 325 KVPELIYPRKNPGVT--------VFNNRIYVIGGIYNSISLNTVESWKPGES---KWREEPPLIF-----------P--- 379 (534)
T ss_pred ECCCCCcccccceEE--------EECCEEEEEeCCCCCEecceEEEEcCCCC---ceeeCCCcCc-----------C---
Confidence 999987554433332 33999999999863 468999 8875 4654444321 1
Q ss_pred ccccCCccceEEEecCCcEEEEeC--------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCC
Q 042680 188 FRLENNLYPFVYLLPDGNVYVFAN--------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPV 259 (530)
Q Consensus 188 ~~~~~~~Yp~~~llp~G~lfv~Gg--------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~ 259 (530)
.+.+..+..+|+||++|| +++++|||.+++|. .+++||. +|.. ++++. .
T Consensus 380 ------r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~p~-~r~~---~~~~~------------~ 436 (534)
T PHA03098 380 ------RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS-KGSPLPI-SHYG---GCAIY------------H 436 (534)
T ss_pred ------CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee-ecCCCCc-cccC---ceEEE------------E
Confidence 134566778999999999 35899999999999 7888873 3432 22221 4
Q ss_pred CcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcc
Q 042680 260 DAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWH 338 (530)
Q Consensus 260 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~ 338 (530)
+++||++||.+.... ....+.+++|||. +++|+.. +|+.+|..+.++++ +|+|||+||....
T Consensus 437 ~~~iyv~GG~~~~~~---------~~~~~~v~~yd~~--~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~----- 499 (534)
T PHA03098 437 DGKIYVIGGISYIDN---------IKVYNIVESYNPV--TNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYE----- 499 (534)
T ss_pred CCEEEEECCccCCCC---------CcccceEEEecCC--CCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCC-----
Confidence 799999999752210 0124569999998 4999998 89999998888876 9999999997621
Q ss_pred cCCCCCcccEEecCCCCCCCceEEecCCCC
Q 042680 339 CADKPSLKPMLYRPNAPEGQRFAELAPTDI 368 (530)
Q Consensus 339 ~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~ 368 (530)
.....+|+|||+++ +|+.+..++.
T Consensus 500 ---~~~~~v~~yd~~~~---~W~~~~~~p~ 523 (534)
T PHA03098 500 ---YYINEIEVYDDKTN---TWTLFCKFPK 523 (534)
T ss_pred ---cccceeEEEeCCCC---EEEecCCCcc
Confidence 11347899999999 9998876554
No 17
>PLN02193 nitrile-specifier protein
Probab=99.89 E-value=2e-21 Score=211.12 Aligned_cols=272 Identities=15% Similarity=0.188 Sum_probs=179.9
Q ss_pred CcEEEccC---CcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcE
Q 042680 35 GSWELISQ---NAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAV 111 (530)
Q Consensus 35 g~w~~~~~---~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w 111 (530)
++|..+.. .+.-++-|.+.. .+++||++||.... . . + +....++||+.+++|
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~-~~~~iyv~GG~~~~--------~--~------~--------~~~~v~~yD~~~~~W 205 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQ-VGNKIYSFGGEFTP--------N--Q------P--------IDKHLYVFDLETRTW 205 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEE-ECCEEEEECCcCCC--------C--C------C--------eeCcEEEEECCCCEE
Confidence 78998765 234577788877 78999999996421 0 0 0 125588999999999
Q ss_pred EEccccC---CcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCC
Q 042680 112 KALKVQS---DTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGN 183 (530)
Q Consensus 112 ~~l~~~~---~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~ 183 (530)
+.++.+. ...|.+++. +..+++|||+||.+. .++++| |.++ +|....++- ..
T Consensus 206 ~~~~~~g~~P~~~~~~~~~-------v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~---~W~~l~~~~-~~--------- 265 (470)
T PLN02193 206 SISPATGDVPHLSCLGVRM-------VSIGSTLYVFGGRDASRQYNGFYSFDTTTN---EWKLLTPVE-EG--------- 265 (470)
T ss_pred EeCCCCCCCCCCcccceEE-------EEECCEEEEECCCCCCCCCccEEEEECCCC---EEEEcCcCC-CC---------
Confidence 9886542 222333221 234999999999864 468899 8875 566554431 10
Q ss_pred CCccccccCCccceEEEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCC
Q 042680 184 PKGRFRLENNLYPFVYLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTY 256 (530)
Q Consensus 184 ~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~ 256 (530)
+ ...+-|..++.+++||++||. +.+.||+.+++|. .+++ |+. ...++.++++..
T Consensus 266 P-------~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~-~~~-~~~~R~~~~~~~--------- 326 (470)
T PLN02193 266 P-------TPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF-HCST-PGD-SFSIRGGAGLEV--------- 326 (470)
T ss_pred C-------CCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCC-CCC-CCCCCCCcEEEE---------
Confidence 1 112336667789999999993 5789999999998 6654 211 111222222211
Q ss_pred CCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-C---CCCccccceeeeecCCeEEEEcCCCC
Q 042680 257 KPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-K---MPAPRTMADGVLLPNGEVLIINGADL 332 (530)
Q Consensus 257 ~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~---M~~~R~~~~~vvLpdG~VlViGG~~~ 332 (530)
.+++||++||.+ +. .++++++|||. +++|+.. . +|.+|..++++++ +++|||+||...
T Consensus 327 --~~gkiyviGG~~-g~------------~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~~-~~~iyv~GG~~~ 388 (470)
T PLN02193 327 --VQGKVWVVYGFN-GC------------EVDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAAV-GKHIVIFGGEIA 388 (470)
T ss_pred --ECCcEEEEECCC-CC------------ccCceEEEECC--CCEEEEeccCCCCCCCcceeEEEEE-CCEEEEECCccC
Confidence 378999999975 21 24678999998 4999975 4 4889999988876 999999999742
Q ss_pred CC-CCcccCCCCCcccEEecCCCCCCCceEEecCC------CCCCcccccce--ecCCCeEEEcCCCC
Q 042680 333 GS-GGWHCADKPSLKPMLYRPNAPEGQRFAELAPT------DIPRMYHSVAN--LLPDGKVFVGGSND 391 (530)
Q Consensus 333 g~-~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~------~~~R~yHS~a~--LLpdGrVlv~GG~~ 391 (530)
.. .+..........+++|||.++ +|+.+..+ +.+|..|+.+. +..+.++++.||..
T Consensus 389 ~~~~~~~~~~~~~ndv~~~D~~t~---~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~ 453 (470)
T PLN02193 389 MDPLAHVGPGQLTDGTFALDTETL---QWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKA 453 (470)
T ss_pred CccccccCccceeccEEEEEcCcC---EEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCC
Confidence 10 000000112236899999999 99988753 56788886542 32233499999974
No 18
>PLN02193 nitrile-specifier protein
Probab=99.89 E-value=3.3e-21 Score=209.41 Aligned_cols=243 Identities=14% Similarity=0.123 Sum_probs=167.1
Q ss_pred EEEEeCCC----CcEEEcccc---CCcccccceeccCCcEEEccCCeEEEeccCCC------CcEEEE-cCCCCCCCceE
Q 042680 101 SIFYDYNK----NAVKALKVQ---SDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA------FSYEYV-PVEKESNKAAI 166 (530)
Q Consensus 101 ~~~yDp~t----~~w~~l~~~---~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~------~s~E~y-P~~~~~~~~~~ 166 (530)
+.++||.+ ++|..+..+ +..++..+++ ..+++|||+||... .++++| +.++ +|.
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~--------~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~---~W~- 206 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIA--------QVGNKIYSFGGEFTPNQPIDKHLYVFDLETR---TWS- 206 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEE--------EECCEEEEECCcCCCCCCeeCcEEEEECCCC---EEE-
Confidence 44558766 899998764 4345443332 33899999999742 357888 8764 454
Q ss_pred EeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeC-------ceEEEEeCCCCeEEEEccCCCC--CCCc
Q 042680 167 AFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN-------NRSVVHDPKANKIIREFPQLPG--GARS 237 (530)
Q Consensus 167 ~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg-------~~~e~yDp~tn~w~~~~p~mp~--~~r~ 237 (530)
..+.... .|+. ...-+..+..+++||++|| +++++||+.+++|. .+++|+. .+|.
T Consensus 207 ~~~~~g~---------~P~~------~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~ 270 (470)
T PLN02193 207 ISPATGD---------VPHL------SCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWK-LLTPVEEGPTPRS 270 (470)
T ss_pred eCCCCCC---------CCCC------cccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEE-EcCcCCCCCCCcc
Confidence 3332110 0110 1122456778999999999 36899999999998 6877732 1344
Q ss_pred cCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCcccc
Q 042680 238 YPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTM 313 (530)
Q Consensus 238 yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~ 313 (530)
+ +++.. .+++|||+||.+.. ..++++++|||.+ ++|+.. .|+.+|..
T Consensus 271 ~----h~~~~-----------~~~~iYv~GG~~~~------------~~~~~~~~yd~~t--~~W~~~~~~~~~~~~R~~ 321 (470)
T PLN02193 271 F----HSMAA-----------DEENVYVFGGVSAT------------ARLKTLDSYNIVD--KKWFHCSTPGDSFSIRGG 321 (470)
T ss_pred c----eEEEE-----------ECCEEEEECCCCCC------------CCcceEEEEECCC--CEEEeCCCCCCCCCCCCC
Confidence 3 22211 37899999997522 1356789999984 899875 27788988
Q ss_pred ceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCC---CCCCcccccceecCCCeEEEcCCC
Q 042680 314 ADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPT---DIPRMYHSVANLLPDGKVFVGGSN 390 (530)
Q Consensus 314 ~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~---~~~R~yHS~a~LLpdGrVlv~GG~ 390 (530)
+.++++ +|+|||+||.. |. ....+++|||+++ +|+.++++ +.+|..|+++++ +++|||.||.
T Consensus 322 ~~~~~~-~gkiyviGG~~-g~--------~~~dv~~yD~~t~---~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~ 386 (470)
T PLN02193 322 AGLEVV-QGKVWVVYGFN-GC--------EVDDVHYYDPVQD---KWTQVETFGVRPSERSVFASAAV--GKHIVIFGGE 386 (470)
T ss_pred cEEEEE-CCcEEEEECCC-CC--------ccCceEEEECCCC---EEEEeccCCCCCCCcceeEEEEE--CCEEEEECCc
Confidence 888776 99999999964 21 1347899999999 99998765 789999998877 9999999997
Q ss_pred CCCCCc-c--ccCCCCcceEEEEcCCCCCC
Q 042680 391 DNDGYF-E--FAKFPTELRLEKFTPPYLAP 417 (530)
Q Consensus 391 ~~~~~~-~--~~~~~t~~~vE~y~Ppyl~~ 417 (530)
...... . .+.+ ..++++|+|.....
T Consensus 387 ~~~~~~~~~~~~~~--~ndv~~~D~~t~~W 414 (470)
T PLN02193 387 IAMDPLAHVGPGQL--TDGTFALDTETLQW 414 (470)
T ss_pred cCCccccccCccce--eccEEEEEcCcCEE
Confidence 431100 0 0112 23599999988743
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.87 E-value=1.2e-20 Score=196.70 Aligned_cols=228 Identities=18% Similarity=0.133 Sum_probs=141.1
Q ss_pred cCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc---
Q 042680 137 SDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN--- 212 (530)
Q Consensus 137 ~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~--- 212 (530)
.+++|||+||....++++| +... .++|....+|... +|. -+..++.+|+|||+||.
T Consensus 16 ~~~~vyv~GG~~~~~~~~~d~~~~-~~~W~~l~~~p~~----------~R~---------~~~~~~~~~~iYv~GG~~~~ 75 (346)
T TIGR03547 16 IGDKVYVGLGSAGTSWYKLDLKKP-SKGWQKIADFPGG----------PRN---------QAVAAAIDGKLYVFGGIGKA 75 (346)
T ss_pred ECCEEEEEccccCCeeEEEECCCC-CCCceECCCCCCC----------Ccc---------cceEEEECCEEEEEeCCCCC
Confidence 3999999999876677777 5321 1346544444211 111 24567789999999994
Q ss_pred ----------eEEEEeCCCCeEEEEcc-CCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc---
Q 042680 213 ----------RSVVHDPKANKIIREFP-QLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE--- 278 (530)
Q Consensus 213 ----------~~e~yDp~tn~w~~~~p-~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~--- 278 (530)
++|+|||.+|+|. .++ ++| |.. .+.+++. ..+++||++||.+...+....
T Consensus 76 ~~~~~~~~~~~v~~Yd~~~~~W~-~~~~~~p---~~~--~~~~~~~----------~~~g~IYviGG~~~~~~~~~~~~~ 139 (346)
T TIGR03547 76 NSEGSPQVFDDVYRYDPKKNSWQ-KLDTRSP---VGL--LGASGFS----------LHNGQAYFTGGVNKNIFDGYFADL 139 (346)
T ss_pred CCCCcceecccEEEEECCCCEEe-cCCCCCC---Ccc--cceeEEE----------EeCCEEEEEcCcChHHHHHHHhhH
Confidence 4799999999999 665 333 221 2332210 038999999997521100000
Q ss_pred -c-c-----------------ccccccCCcEEEEEcCCCCCcceec-CCCC-ccccceeeeecCCeEEEEcCCCCCCCCc
Q 042680 279 -E-E-----------------KRFVNALDDCARMVVTSPNPEWKIE-KMPA-PRTMADGVLLPNGEVLIINGADLGSGGW 337 (530)
Q Consensus 279 -~-~-----------------~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~-~R~~~~~vvLpdG~VlViGG~~~g~~g~ 337 (530)
. . ......++++++|||. +++|+.. +|+. +|..+.++++ +|+|||+||.... +
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~--t~~W~~~~~~p~~~r~~~~~~~~-~~~iyv~GG~~~~--~- 213 (346)
T TIGR03547 140 SAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPS--TNQWRNLGENPFLGTAGSAIVHK-GNKLLLINGEIKP--G- 213 (346)
T ss_pred hhcCccchhhhhhHHHHhCCChhHcCccceEEEEECC--CCceeECccCCCCcCCCceEEEE-CCEEEEEeeeeCC--C-
Confidence 0 0 0000024789999998 4999998 8997 5766666665 9999999997421 0
Q ss_pred ccCCCCCcccEEe--cCCCCCCCceEEecCCCCCCc-------ccccceecCCCeEEEcCCCCCCCCcc---ccC-C---
Q 042680 338 HCADKPSLKPMLY--RPNAPEGQRFAELAPTDIPRM-------YHSVANLLPDGKVFVGGSNDNDGYFE---FAK-F--- 401 (530)
Q Consensus 338 ~~~~~p~~~~eiY--DP~t~~g~~Wt~la~~~~~R~-------yHS~a~LLpdGrVlv~GG~~~~~~~~---~~~-~--- 401 (530)
......++| ||+++ +|+.+++|+.+|. .|+++++ +|+|||+||....+..- .+. +
T Consensus 214 ----~~~~~~~~y~~~~~~~---~W~~~~~m~~~r~~~~~~~~~~~a~~~--~~~Iyv~GG~~~~~~~~~~~~~~~~~~~ 284 (346)
T TIGR03547 214 ----LRTAEVKQYLFTGGKL---EWNKLPPLPPPKSSSQEGLAGAFAGIS--NGVLLVAGGANFPGAQENYKNGKLYAHE 284 (346)
T ss_pred ----ccchheEEEEecCCCc---eeeecCCCCCCCCCccccccEEeeeEE--CCEEEEeecCCCCCchhhhhcCCccccC
Confidence 011234445 56788 9999999998873 3434455 99999999964321000 000 0
Q ss_pred --CCcceEEEEcCCCC
Q 042680 402 --PTELRLEKFTPPYL 415 (530)
Q Consensus 402 --~t~~~vE~y~Ppyl 415 (530)
....++|+|+|..-
T Consensus 285 ~~~~~~~~e~yd~~~~ 300 (346)
T TIGR03547 285 GLIKAWSSEVYALDNG 300 (346)
T ss_pred CCCceeEeeEEEecCC
Confidence 01246999999853
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.85 E-value=6.1e-20 Score=194.05 Aligned_cols=252 Identities=16% Similarity=0.164 Sum_probs=159.6
Q ss_pred CCcEEEccCCcc-hheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEE
Q 042680 34 LGSWELISQNAG-ISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVK 112 (530)
Q Consensus 34 ~g~w~~~~~~~~-v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~ 112 (530)
.++|..+.+... .+..|.++. .+++||++||...... ++ . ..+....++||+.+++|+
T Consensus 61 ~~~W~~l~~~p~~~r~~~~~v~-~~~~IYV~GG~~~~~~-----~~----~-----------~~~~~~v~~YD~~~n~W~ 119 (376)
T PRK14131 61 SKGWTKIAAFPGGPREQAVAAF-IDGKLYVFGGIGKTNS-----EG----S-----------PQVFDDVYKYDPKTNSWQ 119 (376)
T ss_pred CCCeEECCcCCCCCcccceEEE-ECCEEEEEcCCCCCCC-----CC----c-----------eeEcccEEEEeCCCCEEE
Confidence 367998876543 455565555 6899999999642100 00 0 013467899999999999
Q ss_pred EccccC-CcccccceeccCCcEEEccCCeEEEeccCCC--------------------------------------CcEE
Q 042680 113 ALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRDA--------------------------------------FSYE 153 (530)
Q Consensus 113 ~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~--------------------------------------~s~E 153 (530)
.++.+. ...+..+++ ++.||+|||+||.+. ..+|
T Consensus 120 ~~~~~~p~~~~~~~~~-------~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~ 192 (376)
T PRK14131 120 KLDTRSPVGLAGHVAV-------SLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVL 192 (376)
T ss_pred eCCCCCCCcccceEEE-------EeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEE
Confidence 998542 222211211 334999999999752 3589
Q ss_pred EE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeCc------eEE----EEeCCCC
Q 042680 154 YV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANN------RSV----VHDPKAN 222 (530)
Q Consensus 154 ~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~------~~e----~yDp~tn 222 (530)
+| |.++ .|....++... + ..-+.++..+++||++||. ..+ .||++++
T Consensus 193 ~YD~~t~---~W~~~~~~p~~----------~---------~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T PRK14131 193 SYDPSTN---QWKNAGESPFL----------G---------TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNL 250 (376)
T ss_pred EEECCCC---eeeECCcCCCC----------C---------CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCc
Confidence 99 9876 46544333210 1 1234567779999999983 222 4588999
Q ss_pred eEEEEccCCCCCCCcc--CC--Cce-EeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccc-----ccccCCcEEE
Q 042680 223 KIIREFPQLPGGARSY--PA--TGT-SVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKR-----FVNALDDCAR 292 (530)
Q Consensus 223 ~w~~~~p~mp~~~r~y--p~--~g~-svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~-----~~~a~~s~~~ 292 (530)
+|. .+++||. +|.. +. .+. +++ .+++|||+||.+..........+. ......++|+
T Consensus 251 ~W~-~~~~~p~-~~~~~~~~~~~~~~a~~------------~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 316 (376)
T PRK14131 251 KWQ-KLPDLPP-APGGSSQEGVAGAFAGY------------SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEI 316 (376)
T ss_pred cee-ecCCCCC-CCcCCcCCccceEecee------------ECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehhe
Confidence 999 7999984 3321 11 111 121 378999999975211000000000 0011235789
Q ss_pred EEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEE
Q 042680 293 MVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAE 362 (530)
Q Consensus 293 ~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~ 362 (530)
|||. +++|+.. +||.+|.++.++++ +|+|||+||...+ ......+++|+|+.+ .++.
T Consensus 317 yd~~--~~~W~~~~~lp~~r~~~~av~~-~~~iyv~GG~~~~-------~~~~~~v~~~~~~~~---~~~~ 374 (376)
T PRK14131 317 YALV--NGKWQKVGELPQGLAYGVSVSW-NNGVLLIGGETAG-------GKAVSDVTLLSWDGK---KLTV 374 (376)
T ss_pred EEec--CCcccccCcCCCCccceEEEEe-CCEEEEEcCCCCC-------CcEeeeEEEEEEcCC---EEEE
Confidence 9998 4899987 99999999887776 9999999997521 123557899999987 7654
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.84 E-value=2.1e-19 Score=185.86 Aligned_cols=223 Identities=17% Similarity=0.126 Sum_probs=147.7
Q ss_pred cEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcE----
Q 042680 36 SWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAV---- 111 (530)
Q Consensus 36 ~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w---- 111 (530)
+|..+..+..-++.|..+. .+++||++||.+.. . +....++||+.+++|
T Consensus 52 ~W~~~~~lp~~r~~~~~~~-~~~~lyviGG~~~~-----------~---------------~~~~v~~~d~~~~~w~~~~ 104 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVS-VENGIYYIGGSNSS-----------E---------------RFSSVYRITLDESKEELIC 104 (323)
T ss_pred eEEEcccCCccccceEEEE-ECCEEEEEcCCCCC-----------C---------------CceeEEEEEEcCCceeeee
Confidence 6999876665565555554 58999999986421 1 235688999999998
Q ss_pred EEccccCCcccccceeccCCcEEEccCCeEEEeccCCC----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCc
Q 042680 112 KALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDA----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKG 186 (530)
Q Consensus 112 ~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~ 186 (530)
+.++.|+..++..+++ +.+|+|||+||... .++|+| |.++ +|....++... +|
T Consensus 105 ~~~~~lp~~~~~~~~~--------~~~~~iYv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~----------~r- 162 (323)
T TIGR03548 105 ETIGNLPFTFENGSAC--------YKDGTLYVGGGNRNGKPSNKSYLFNLETQ---EWFELPDFPGE----------PR- 162 (323)
T ss_pred eEcCCCCcCccCceEE--------EECCEEEEEeCcCCCccCceEEEEcCCCC---CeeECCCCCCC----------CC-
Confidence 7788887555543332 34999999999732 478999 8875 56554444211 11
Q ss_pred cccccCCccceEEEecCCcEEEEeCc------eEEEEeCCCCeEEEEccCCCCC--CCccCCCceEeeccCCCCCCCCCC
Q 042680 187 RFRLENNLYPFVYLLPDGNVYVFANN------RSVVHDPKANKIIREFPQLPGG--ARSYPATGTSVLLPLYLPRDTYKP 258 (530)
Q Consensus 187 ~~~~~~~~Yp~~~llp~G~lfv~Gg~------~~e~yDp~tn~w~~~~p~mp~~--~r~yp~~g~svmlpl~~~~~~~~~ 258 (530)
.-++.+..+++|||+||. ++++|||++++|. .+++|+.. ++... ..+++.+
T Consensus 163 --------~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~p~~~~-~~~~~~~----------- 221 (323)
T TIGR03548 163 --------VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ-KVADPTTDSEPISLL-GAASIKI----------- 221 (323)
T ss_pred --------CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE-ECCCCCCCCCceecc-ceeEEEE-----------
Confidence 124556789999999994 4689999999998 78877521 22211 1222211
Q ss_pred CCcEEEEecCccCCcccccccc-------------------c-cccccCCcEEEEEcCCCCCcceec-CCC-Ccccccee
Q 042680 259 VDAEVLICGGSVREGLYLGEEE-------------------K-RFVNALDDCARMVVTSPNPEWKIE-KMP-APRTMADG 316 (530)
Q Consensus 259 ~~gkI~v~GG~~~~~~~~~~~~-------------------~-~~~~a~~s~~~~dp~~~~~~W~~~-~M~-~~R~~~~~ 316 (530)
.+++|||+||.+...+.+.-.. + ....-.+++++|||.. ++|+.. +|+ .+|..+.+
T Consensus 222 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~~r~~~~~ 299 (323)
T TIGR03548 222 NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRT--GKWKSIGNSPFFARCGAAL 299 (323)
T ss_pred CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCC--CeeeEcccccccccCchhe
Confidence 3689999999752211000000 0 0000136799999984 899987 787 58888888
Q ss_pred eeecCCeEEEEcCCC
Q 042680 317 VLLPNGEVLIINGAD 331 (530)
Q Consensus 317 vvLpdG~VlViGG~~ 331 (530)
+++ +++||++||..
T Consensus 300 ~~~-~~~iyv~GG~~ 313 (323)
T TIGR03548 300 LLT-GNNIFSINGEL 313 (323)
T ss_pred EEE-CCEEEEEeccc
Confidence 876 99999999964
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.58 E-value=3.7e-13 Score=131.72 Aligned_cols=281 Identities=15% Similarity=0.156 Sum_probs=173.2
Q ss_pred cEEEccCCcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEcc
Q 042680 36 SWELISQNAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALK 115 (530)
Q Consensus 36 ~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~ 115 (530)
.|..-.....-+--|+++. ...+||-||+.-.+..- +. ..++ .+-.++..+-.|+.++
T Consensus 3 ~WTVHLeGGPrRVNHAava-VG~riYSFGGYCsGedy----------~~-------~~pi----DVH~lNa~~~RWtk~p 60 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVA-VGSRIYSFGGYCSGEDY----------DA-------KDPI----DVHVLNAENYRWTKMP 60 (392)
T ss_pred eEEEEecCCcccccceeee-ecceEEecCCccccccc----------cc-------CCcc----eeEEeeccceeEEecC
Confidence 4777555556678899988 88999999998654210 00 0111 2346777788899887
Q ss_pred ccC-Cc----ccccceeccCCcEEEccCCeEEEeccCCC-----Cc-EEEEcCCCCCCCce--EEeccccccccccCCCC
Q 042680 116 VQS-DT----WCSSGGLSADGRLVMLSDGSFLVYGGRDA-----FS-YEYVPVEKESNKAA--IAFPFLFETQDFLERPG 182 (530)
Q Consensus 116 ~~~-~~----~~~~~~~l~dG~l~~L~dG~v~VvGG~~~-----~s-~E~yP~~~~~~~~~--~~~p~l~~t~d~~~~~~ 182 (530)
+.. +. -++..-++-=|.-+++-++++||-||++. +. +||-|.++ .|. ...-++..
T Consensus 61 p~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~---~W~~p~v~G~vPg--------- 128 (392)
T KOG4693|consen 61 PGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETN---VWKKPEVEGFVPG--------- 128 (392)
T ss_pred cccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccc---cccccceeeecCC---------
Confidence 631 10 01100011112223456999999999975 22 44449886 343 22222211
Q ss_pred CCCccccccCCccceEEEecCCcEEEEeC---------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCC
Q 042680 183 NPKGRFRLENNLYPFVYLLPDGNVYVFAN---------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPR 253 (530)
Q Consensus 183 ~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg---------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~ 253 (530)
.| --|..++.+..+||||| ++...+|..|-+|. .+-.. +.+..|.-..++++
T Consensus 129 ---aR-------DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr-~~~Tk-g~PprwRDFH~a~~------- 189 (392)
T KOG4693|consen 129 ---AR-------DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWR-EMHTK-GDPPRWRDFHTASV------- 189 (392)
T ss_pred ---cc-------CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeee-ehhcc-CCCchhhhhhhhhh-------
Confidence 11 13567888999999999 35778999999997 55332 11212222244443
Q ss_pred CCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec---C-CCCccccceeeeecCCeEEEEcC
Q 042680 254 DTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE---K-MPAPRTMADGVLLPNGEVLIING 329 (530)
Q Consensus 254 ~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~---~-M~~~R~~~~~vvLpdG~VlViGG 329 (530)
+++.+||+||..... ... -.....--.....+|.. +..|... . .|.+|..|++-+. ||++|++||
T Consensus 190 -----~~~~MYiFGGR~D~~-gpf--Hs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGG 258 (392)
T KOG4693|consen 190 -----IDGMMYIFGGRSDES-GPF--HSIHEQYCDTIMALDLA--TGAWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGG 258 (392)
T ss_pred -----ccceEEEeccccccC-CCc--cchhhhhcceeEEEecc--ccccccCCCCCcCCCcccccceEEE-cceEEEecc
Confidence 479999999975321 100 00000011223335544 5889863 3 5889999998886 999999999
Q ss_pred CCCCCCCcccCCCCCcccEEecCCCCCCCceEEec---CCCCCCcccccceecCCCeEEEcCCCC
Q 042680 330 ADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELA---PTDIPRMYHSVANLLPDGKVFVGGSND 391 (530)
Q Consensus 330 ~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la---~~~~~R~yHS~a~LLpdGrVlv~GG~~ 391 (530)
++ |.- +.-.....+|||++. .|+.+. .-+.+|.-|++.+. ++|||+.||-.
T Consensus 259 Yn-g~l-----n~HfndLy~FdP~t~---~W~~I~~~Gk~P~aRRRqC~~v~--g~kv~LFGGTs 312 (392)
T KOG4693|consen 259 YN-GTL-----NVHFNDLYCFDPKTS---MWSVISVRGKYPSARRRQCSVVS--GGKVYLFGGTS 312 (392)
T ss_pred cc-hhh-----hhhhcceeecccccc---hheeeeccCCCCCcccceeEEEE--CCEEEEecCCC
Confidence 87 331 222346789999999 998653 45677877877776 99999999964
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.27 E-value=4.8e-10 Score=122.51 Aligned_cols=252 Identities=17% Similarity=0.209 Sum_probs=166.2
Q ss_pred CcchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccC--Cc
Q 042680 43 NAGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQS--DT 120 (530)
Q Consensus 43 ~~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~--~~ 120 (530)
....++-|++.+ .++|++|||+...+ .|.. +. ..+++|..+..|.....-. ..
T Consensus 57 ~p~~R~~hs~~~-~~~~~~vfGG~~~~-----------~~~~------------~~-dl~~~d~~~~~w~~~~~~g~~p~ 111 (482)
T KOG0379|consen 57 GPIPRAGHSAVL-IGNKLYVFGGYGSG-----------DRLT------------DL-DLYVLDLESQLWTKPAATGDEPS 111 (482)
T ss_pred CcchhhccceeE-ECCEEEEECCCCCC-----------Cccc------------cc-eeEEeecCCcccccccccCCCCC
Confidence 445588999998 79999999997542 1110 11 4789999998888764332 21
Q ss_pred ccccceeccCCcEEEccCCeEEEeccCCC-----CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCc
Q 042680 121 WCSSGGLSADGRLVMLSDGSFLVYGGRDA-----FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNL 194 (530)
Q Consensus 121 ~~~~~~~l~dG~l~~L~dG~v~VvGG~~~-----~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~ 194 (530)
-+.++. ++++ +.++|++||++. +.+..| +.+. +|....+. .+ .|..|
T Consensus 112 ~r~g~~------~~~~-~~~l~lfGG~~~~~~~~~~l~~~d~~t~---~W~~l~~~----~~------~P~~r------- 164 (482)
T KOG0379|consen 112 PRYGHS------LSAV-GDKLYLFGGTDKKYRNLNELHSLDLSTR---TWSLLSPT----GD------PPPPR------- 164 (482)
T ss_pred ccccee------EEEE-CCeEEEEccccCCCCChhheEeccCCCC---cEEEecCc----CC------CCCCc-------
Confidence 222222 2234 899999999974 245556 6654 34433322 11 12222
Q ss_pred cceEEEecCCcEEEEeC--------ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEe
Q 042680 195 YPFVYLLPDGNVYVFAN--------NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLIC 266 (530)
Q Consensus 195 Yp~~~llp~G~lfv~Gg--------~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~ 266 (530)
.-|..++.+.+|||||| ++.++||+++.+|. ++.. .+. .--|+.+.+... .+.+++++
T Consensus 165 ~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~-~~~~-~g~-~P~pR~gH~~~~-----------~~~~~~v~ 230 (482)
T KOG0379|consen 165 AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWS-ELDT-QGE-APSPRYGHAMVV-----------VGNKLLVF 230 (482)
T ss_pred ccceEEEECCEEEEECCccCcccceeeeeeeccccccce-eccc-CCC-CCCCCCCceEEE-----------ECCeEEEE
Confidence 34777888999999999 46899999999998 4432 221 112444444321 47899999
Q ss_pred cCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCC
Q 042680 267 GGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADK 342 (530)
Q Consensus 267 GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~ 342 (530)
||...+. ..++++.++|... -+|... .+|.+|..|.++. -..+++|+||...+. ..
T Consensus 231 gG~~~~~-----------~~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~~-~~~~~~l~gG~~~~~------~~ 290 (482)
T KOG0379|consen 231 GGGDDGD-----------VYLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLTV-SGDHLLLFGGGTDPK------QE 290 (482)
T ss_pred eccccCC-----------ceecceEeeeccc--ceeeeccccCCCCCCcceeeeEE-ECCEEEEEcCCcccc------cc
Confidence 9976221 2467889999874 889842 5899999999995 488999999976320 01
Q ss_pred CCcccEEecCCCCCCCceEEecCC----CCCCcccccceecCCCe
Q 042680 343 PSLKPMLYRPNAPEGQRFAELAPT----DIPRMYHSVANLLPDGK 383 (530)
Q Consensus 343 p~~~~eiYDP~t~~g~~Wt~la~~----~~~R~yHS~a~LLpdGr 383 (530)
+......||..+. .|+.+... +.+|.-|...+.-..++
T Consensus 291 ~l~~~~~l~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (482)
T KOG0379|consen 291 PLGDLYGLDLETL---VWSKVESVGVVRPSPRLGHAAELIDELGK 332 (482)
T ss_pred ccccccccccccc---ceeeeeccccccccccccccceeeccCCc
Confidence 4557788999988 88865444 46788888776544444
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.16 E-value=1.4e-09 Score=118.98 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=116.0
Q ss_pred ccceEEEecCCcEEEEeCc--------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEE
Q 042680 194 LYPFVYLLPDGNVYVFANN--------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLI 265 (530)
Q Consensus 194 ~Yp~~~llp~G~lfv~Gg~--------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v 265 (530)
-|-|..+..+.+||+|||. ....||+.|++|. .+.+....+ -|+.+.++.. ...+|||
T Consensus 113 r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~-~l~~~~~~P--~~r~~Hs~~~-----------~g~~l~v 178 (482)
T KOG0379|consen 113 RYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWS-LLSPTGDPP--PPRAGHSATV-----------VGTKLVV 178 (482)
T ss_pred ccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEE-EecCcCCCC--CCcccceEEE-----------ECCEEEE
Confidence 3456777789999999994 5789999999998 454332211 1122333321 3789999
Q ss_pred ecCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCC
Q 042680 266 CGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCAD 341 (530)
Q Consensus 266 ~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~ 341 (530)
+||.+... ..++++.+||+.. .+|... .-|.||..|.+++. ++++||+||...+ +
T Consensus 179 fGG~~~~~-----------~~~ndl~i~d~~~--~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~-------~ 237 (482)
T KOG0379|consen 179 FGGIGGTG-----------DSLNDLHIYDLET--STWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDG-------D 237 (482)
T ss_pred ECCccCcc-----------cceeeeeeecccc--ccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccC-------C
Confidence 99986221 1467899999984 789863 57889999998886 9999999996521 1
Q ss_pred CCCcccEEecCCCCCCCceEEe---cCCCCCCcccccceecCCCeEEEcCCCCCC
Q 042680 342 KPSLKPMLYRPNAPEGQRFAEL---APTDIPRMYHSVANLLPDGKVFVGGSNDND 393 (530)
Q Consensus 342 ~p~~~~eiYDP~t~~g~~Wt~l---a~~~~~R~yHS~a~LLpdGrVlv~GG~~~~ 393 (530)
.....+.++|-.+- +|..+ ...+.+|++|+.++. ..++++.||.+..
T Consensus 238 ~~l~D~~~ldl~~~---~W~~~~~~g~~p~~R~~h~~~~~--~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 238 VYLNDVHILDLSTW---EWKLLPTGGDLPSPRSGHSLTVS--GDHLLLFGGGTDP 287 (482)
T ss_pred ceecceEeeecccc---eeeeccccCCCCCCcceeeeEEE--CCEEEEEcCCccc
Confidence 22446789999998 99854 466789999998865 8888888887653
No 25
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=99.16 E-value=5.1e-10 Score=111.12 Aligned_cols=135 Identities=24% Similarity=0.400 Sum_probs=90.3
Q ss_pred eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEE
Q 042680 213 RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCAR 292 (530)
Q Consensus 213 ~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~ 292 (530)
.+.+||+.+|++. .+.. . .+--+ ++.++|| +|++++.||...+ .+.+..
T Consensus 47 ~s~~yD~~tn~~r-pl~v-~---td~FC-Sgg~~L~-----------dG~ll~tGG~~~G--------------~~~ir~ 95 (243)
T PF07250_consen 47 HSVEYDPNTNTFR-PLTV-Q---TDTFC-SGGAFLP-----------DGRLLQTGGDNDG--------------NKAIRI 95 (243)
T ss_pred EEEEEecCCCcEE-eccC-C---CCCcc-cCcCCCC-----------CCCEEEeCCCCcc--------------ccceEE
Confidence 4678999999987 5542 1 23233 3444554 7999999997532 233456
Q ss_pred EEcCC--CCCcceec--CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCC--CceEEecCC
Q 042680 293 MVVTS--PNPEWKIE--KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEG--QRFAELAPT 366 (530)
Q Consensus 293 ~dp~~--~~~~W~~~--~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g--~~Wt~la~~ 366 (530)
|+|.. ....|... .|..+|+|+++++|+||+|+|+||.. ..+.|.|++..... ..|..+...
T Consensus 96 ~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~------------~~t~E~~P~~~~~~~~~~~~~l~~~ 163 (243)
T PF07250_consen 96 FTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN------------NPTYEFWPPKGPGPGPVTLPFLSQT 163 (243)
T ss_pred EecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcC------------CCcccccCCccCCCCceeeecchhh
Confidence 77753 24579875 69999999999999999999999975 12457666643311 233333322
Q ss_pred --CCCCcccccceecCCCeEEEcCCC
Q 042680 367 --DIPRMYHSVANLLPDGKVFVGGSN 390 (530)
Q Consensus 367 --~~~R~yHS~a~LLpdGrVlv~GG~ 390 (530)
..+..+.--..|||||+||+.+..
T Consensus 164 ~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 164 SDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred hccCccccCceEEEcCCCCEEEEEcC
Confidence 334444445678899999999874
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.15 E-value=3.2e-10 Score=111.33 Aligned_cols=160 Identities=16% Similarity=0.270 Sum_probs=117.0
Q ss_pred eEEEecCCcEEEEeCc------------eEEEEeCCCCeEEEEccC-C-----CCC--CCccCCCceEeeccCCCCCCCC
Q 042680 197 FVYLLPDGNVYVFANN------------RSVVHDPKANKIIREFPQ-L-----PGG--ARSYPATGTSVLLPLYLPRDTY 256 (530)
Q Consensus 197 ~~~llp~G~lfv~Gg~------------~~e~yDp~tn~w~~~~p~-m-----p~~--~r~yp~~g~svmlpl~~~~~~~ 256 (530)
|+.+....+||-|||. ++.+++-.+-+|+ ++|+ + +.. .--|.+.|.++++
T Consensus 17 HAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWt-k~pp~~~ka~i~~~yp~VPyqRYGHtvV~--------- 86 (392)
T KOG4693|consen 17 HAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWT-KMPPGITKATIESPYPAVPYQRYGHTVVE--------- 86 (392)
T ss_pred ceeeeecceEEecCCcccccccccCCcceeEEeeccceeEE-ecCcccccccccCCCCccchhhcCceEEE---------
Confidence 6677889999999993 4667777788999 6776 1 110 1123344666643
Q ss_pred CCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCccee---c-CCCCccccceeeeecCCeEEEEcCCCC
Q 042680 257 KPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKI---E-KMPAPRTMADGVLLPNGEVLIINGADL 332 (530)
Q Consensus 257 ~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~---~-~M~~~R~~~~~vvLpdG~VlViGG~~~ 332 (530)
+++++|+-||.+... .+-+...+|||+ +++|.. + -.|-+|-.|+++++ +..+||+||...
T Consensus 87 --y~d~~yvWGGRND~e-----------gaCN~Ly~fDp~--t~~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~ 150 (392)
T KOG4693|consen 87 --YQDKAYVWGGRNDDE-----------GACNLLYEFDPE--TNVWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEE 150 (392)
T ss_pred --EcceEEEEcCccCcc-----------cccceeeeeccc--cccccccceeeecCCccCCceeeEE-CcEEEEecChHH
Confidence 589999999987321 355677889998 599975 3 58999999999997 999999999763
Q ss_pred CCCCcccCCCCCcccEEecCCCCCCCceEEecCCC---CCCcccccceecCCCeEEEcCCCCCC
Q 042680 333 GSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD---IPRMYHSVANLLPDGKVFVGGSNDND 393 (530)
Q Consensus 333 g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~---~~R~yHS~a~LLpdGrVlv~GG~~~~ 393 (530)
... .-.......|-+|- +|+.+..-. .-|-+|++.++ |++.||.||....
T Consensus 151 ~a~------~FS~d~h~ld~~Tm---tWr~~~Tkg~PprwRDFH~a~~~--~~~MYiFGGR~D~ 203 (392)
T KOG4693|consen 151 DAQ------RFSQDTHVLDFATM---TWREMHTKGDPPRWRDFHTASVI--DGMMYIFGGRSDE 203 (392)
T ss_pred HHH------hhhccceeEeccce---eeeehhccCCCchhhhhhhhhhc--cceEEEecccccc
Confidence 222 22335678899999 999765444 44889998887 9999999996543
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.04 E-value=3.4e-09 Score=109.55 Aligned_cols=207 Identities=18% Similarity=0.280 Sum_probs=139.6
Q ss_pred CceeEEEEeCCCCcEEEcccc--CCcccccceeccCCcEEEccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccc
Q 042680 97 CWCHSIFYDYNKNAVKALKVQ--SDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFE 173 (530)
Q Consensus 97 ~~a~~~~yDp~t~~w~~l~~~--~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~ 173 (530)
.++.-+.||.++++|+.+... +.++|+..++ +.+.|.+++.||. |- |...
T Consensus 96 vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~v-------a~~s~~l~~fGGE------faSPnq~-------------- 148 (521)
T KOG1230|consen 96 VYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAV-------AVPSNILWLFGGE------FASPNQE-------------- 148 (521)
T ss_pred EeeeeeEEeccccceeEeccCCCcCCCccceeE-------EeccCeEEEeccc------cCCcchh--------------
Confidence 457788999999999999766 4678876664 6888999999994 22 2211
Q ss_pred cccccCCCCCCCccccccCCccceEEEecCCcEEEEeCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCC
Q 042680 174 TQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPR 253 (530)
Q Consensus 174 t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~ 253 (530)
+ +.-| .+.|+||.++++|+ ++. .++++ .|++|.- |..
T Consensus 149 -------------q----F~HY----------------kD~W~fd~~trkwe-ql~-~~g~P--S~RSGHR-Mva----- 185 (521)
T KOG1230|consen 149 -------------Q----FHHY----------------KDLWLFDLKTRKWE-QLE-FGGGP--SPRSGHR-MVA----- 185 (521)
T ss_pred -------------h----hhhh----------------hheeeeeeccchhe-eec-cCCCC--CCCccce-eEE-----
Confidence 0 1112 34578999999998 453 34332 3445553 321
Q ss_pred CCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec--C--CCCccccceeeeecCCeEEEEcC
Q 042680 254 DTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE--K--MPAPRTMADGVLLPNGEVLIING 329 (530)
Q Consensus 254 ~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~--~--M~~~R~~~~~vvLpdG~VlViGG 329 (530)
++.+++++||.... .. .+.-.+.+.+||+. +-+|+.. + -|.+|+.+++.+.|+|.|+|-||
T Consensus 186 -----wK~~lilFGGFhd~-nr-------~y~YyNDvy~FdLd--tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 186 -----WKRQLILFGGFHDS-NR-------DYIYYNDVYAFDLD--TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred -----eeeeEEEEcceecC-CC-------ceEEeeeeEEEecc--ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 68999999997521 11 12346789999997 4899874 3 48999999999999999999999
Q ss_pred CCCCCCCcccCCCC--CcccEEecCCCCCC--CceEEecCC---CCCCcccccceecCCCeEEEcCCC
Q 042680 330 ADLGSGGWHCADKP--SLKPMLYRPNAPEG--QRFAELAPT---DIPRMYHSVANLLPDGKVFVGGSN 390 (530)
Q Consensus 330 ~~~g~~g~~~~~~p--~~~~eiYDP~t~~g--~~Wt~la~~---~~~R~yHS~a~LLpdGrVlv~GG~ 390 (530)
+.+-..- -..+.. .....+-+|+.+.. -.|+.+.+. +.||...|+++- ++++-|..||-
T Consensus 251 YsK~~~k-K~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va-~n~kal~FGGV 316 (521)
T KOG1230|consen 251 YSKQRVK-KDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVA-KNHKALFFGGV 316 (521)
T ss_pred hhHhhhh-hhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEe-cCCceEEecce
Confidence 8631100 001111 12345567776322 267777654 678999997765 89999999994
No 28
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.83 E-value=9.2e-08 Score=101.10 Aligned_cols=277 Identities=17% Similarity=0.209 Sum_probs=164.1
Q ss_pred CCcEEEccCCc----chheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCC
Q 042680 34 LGSWELISQNA----GISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKN 109 (530)
Q Consensus 34 ~g~w~~~~~~~----~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~ 109 (530)
.=+|..+...+ ..+.-|-++. ...-++||||.+.|- ...--.|+..+|
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVa-ikELiviFGGGNEGi---------------------------iDELHvYNTatn 67 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVA-IKELIVIFGGGNEGI---------------------------IDELHVYNTATN 67 (830)
T ss_pred ccceEEEecccCCCCCccccchhee-eeeeEEEecCCcccc---------------------------hhhhhhhccccc
Confidence 45799887633 3455666666 567788888864331 012337899999
Q ss_pred cEEEcccc--CCcccccceeccCCcEEEccC-CeEEEeccCCC---CcEEEE-cCCCCCCCceEEeccccccccccCCCC
Q 042680 110 AVKALKVQ--SDTWCSSGGLSADGRLVMLSD-GSFLVYGGRDA---FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPG 182 (530)
Q Consensus 110 ~w~~l~~~--~~~~~~~~~~l~dG~l~~L~d-G~v~VvGG~~~---~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~ 182 (530)
+|..=+.- ...-|+...| +.| .||||+||.-. .+-|.| -+.. .|+|-..-|- +.. .+
T Consensus 68 qWf~PavrGDiPpgcAA~Gf--------vcdGtrilvFGGMvEYGkYsNdLYELQas-RWeWkrlkp~---~p~----nG 131 (830)
T KOG4152|consen 68 QWFAPAVRGDIPPGCAAFGF--------VCDGTRILVFGGMVEYGKYSNDLYELQAS-RWEWKRLKPK---TPK----NG 131 (830)
T ss_pred eeecchhcCCCCCchhhcce--------EecCceEEEEccEeeeccccchHHHhhhh-hhhHhhcCCC---CCC----CC
Confidence 99865443 2455665555 234 59999999642 233444 2211 2445433331 110 01
Q ss_pred CCCccccccCCccceEEEecCCcEEEEeCceEEEEeCCCCe--------------------EEEEc--cCCCCCCCccCC
Q 042680 183 NPKGRFRLENNLYPFVYLLPDGNVYVFANNRSVVHDPKANK--------------------IIREF--PQLPGGARSYPA 240 (530)
Q Consensus 183 ~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg~~~e~yDp~tn~--------------------w~~~~--p~mp~~~r~yp~ 240 (530)
+ .+...--|.|.+...|.|+|||-.-+.=||++|- |...+ -++| .+|.
T Consensus 132 ~------pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P-~pRE--- 201 (830)
T KOG4152|consen 132 P------PPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLP-PPRE--- 201 (830)
T ss_pred C------CCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCC-CCcc---
Confidence 1 1222334778899999999999433333555441 32100 0112 1343
Q ss_pred CceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCcccccee
Q 042680 241 TGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTMADG 316 (530)
Q Consensus 241 ~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~~~~ 316 (530)
++++|++- +-+.-..|++|.||.. +. -+.+...+|++ +-.|... --|.+|..|++
T Consensus 202 SHTAViY~------eKDs~~skmvvyGGM~-G~------------RLgDLW~Ldl~--Tl~W~kp~~~G~~PlPRSLHsa 260 (830)
T KOG4152|consen 202 SHTAVIYT------EKDSKKSKMVVYGGMS-GC------------RLGDLWTLDLD--TLTWNKPSLSGVAPLPRSLHSA 260 (830)
T ss_pred cceeEEEE------eccCCcceEEEEcccc-cc------------cccceeEEecc--eeecccccccCCCCCCcccccc
Confidence 35666542 1112367999999986 22 24566778876 4789763 35788999999
Q ss_pred eeecCCeEEEEcCCCC------CCCCcccCCCCCcccEEecCCCCCCCceEEec-------CCCCCCcccccceecCCCe
Q 042680 317 VLLPNGEVLIINGADL------GSGGWHCADKPSLKPMLYRPNAPEGQRFAELA-------PTDIPRMYHSVANLLPDGK 383 (530)
Q Consensus 317 vvLpdG~VlViGG~~~------g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la-------~~~~~R~yHS~a~LLpdGr 383 (530)
++. ..|+||.||.-- ..+--+..+.-..+.-+++-++. +|+.+- ..+.+|..|+++.+ +.|
T Consensus 261 ~~I-GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~---~W~tl~~d~~ed~tiPR~RAGHCAvAi--gtR 334 (830)
T KOG4152|consen 261 TTI-GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM---AWETLLMDTLEDNTIPRARAGHCAVAI--GTR 334 (830)
T ss_pred eee-cceeEEecceeeeeccccccccccceeeeccceeeeeecch---heeeeeeccccccccccccccceeEEe--ccE
Confidence 876 999999999520 01100111222345678999999 998642 24566888987777 999
Q ss_pred EEEcCCCC
Q 042680 384 VFVGGSND 391 (530)
Q Consensus 384 Vlv~GG~~ 391 (530)
+|+=-|.+
T Consensus 335 lYiWSGRD 342 (830)
T KOG4152|consen 335 LYIWSGRD 342 (830)
T ss_pred EEEEeccc
Confidence 99988743
No 29
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.78 E-value=1.3e-07 Score=98.03 Aligned_cols=164 Identities=16% Similarity=0.262 Sum_probs=112.8
Q ss_pred eEEEec-CCcEEEEeC-----------ceEEEEeCCCCeEEEEcc-CCCCCCCccCCCceEeeccCCCCCCCCCCCCcEE
Q 042680 197 FVYLLP-DGNVYVFAN-----------NRSVVHDPKANKIIREFP-QLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEV 263 (530)
Q Consensus 197 ~~~llp-~G~lfv~Gg-----------~~~e~yDp~tn~w~~~~p-~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI 263 (530)
.+++-| ...|++||| ++-..||.++++|.+... +-| .+|+. +.+|..| .+.+
T Consensus 71 sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P-~pRss---hq~va~~-----------s~~l 135 (521)
T KOG1230|consen 71 SLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAP-PPRSS---HQAVAVP-----------SNIL 135 (521)
T ss_pred ceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCc-CCCcc---ceeEEec-----------cCeE
Confidence 344555 458999998 356889999999984332 212 13442 3344333 4799
Q ss_pred EEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec---CCCCccccceeeeecCCeEEEEcCCCCCCCCcccC
Q 042680 264 LICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE---KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCA 340 (530)
Q Consensus 264 ~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~---~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~ 340 (530)
+++||--.... .......+....+|.. +.+|+.. .-|.+|+.|-||+- ..+++|+||...-...|.
T Consensus 136 ~~fGGEfaSPn------q~qF~HYkD~W~fd~~--trkweql~~~g~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~-- 204 (521)
T KOG1230|consen 136 WLFGGEFASPN------QEQFHHYKDLWLFDLK--TRKWEQLEFGGGPSPRSGHRMVAW-KRQLILFGGFHDSNRDYI-- 204 (521)
T ss_pred EEeccccCCcc------hhhhhhhhheeeeeec--cchheeeccCCCCCCCccceeEEe-eeeEEEEcceecCCCceE--
Confidence 99999531110 0111234567788887 5999975 47999999999986 899999999763222221
Q ss_pred CCCCcccEEecCCCCCCCceEEecCC---CCCCcccccceecCCCeEEEcCCCCC
Q 042680 341 DKPSLKPMLYRPNAPEGQRFAELAPT---DIPRMYHSVANLLPDGKVFVGGSNDN 392 (530)
Q Consensus 341 ~~p~~~~eiYDP~t~~g~~Wt~la~~---~~~R~yHS~a~LLpdGrVlv~GG~~~ 392 (530)
-...+.+||-++= +|+.+.+. +.||..|..++- |+|.|+|-||+.-
T Consensus 205 --YyNDvy~FdLdty---kW~Klepsga~PtpRSGcq~~vt-pqg~i~vyGGYsK 253 (521)
T KOG1230|consen 205 --YYNDVYAFDLDTY---KWSKLEPSGAGPTPRSGCQFSVT-PQGGIVVYGGYSK 253 (521)
T ss_pred --EeeeeEEEeccce---eeeeccCCCCCCCCCCcceEEec-CCCcEEEEcchhH
Confidence 1236889999999 99987654 689999987765 9999999999754
No 30
>PF13964 Kelch_6: Kelch motif
Probab=98.73 E-value=2.5e-08 Score=74.66 Aligned_cols=50 Identities=28% Similarity=0.490 Sum_probs=42.7
Q ss_pred ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCC
Q 042680 310 PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPR 370 (530)
Q Consensus 310 ~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R 370 (530)
+|..++++++ +|+|||+||.... ..+...+++|||+++ +|+.+++|+.||
T Consensus 1 pR~~~s~v~~-~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~---~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV-GGKIYVFGGYDNS-------GKYSNDVERYDPETN---TWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEE-CCEEEEECCCCCC-------CCccccEEEEcCCCC---cEEECCCCCCCC
Confidence 5888888876 9999999998631 245678999999999 999999999998
No 31
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.55 E-value=3.6e-06 Score=86.40 Aligned_cols=221 Identities=18% Similarity=0.261 Sum_probs=134.7
Q ss_pred CCcEEEccccC--CcccccceeccCCcEEEccCCeEEEeccCCC---------CcEEEE-cCCCCCCCceEEeccccccc
Q 042680 108 KNAVKALKVQS--DTWCSSGGLSADGRLVMLSDGSFLVYGGRDA---------FSYEYV-PVEKESNKAAIAFPFLFETQ 175 (530)
Q Consensus 108 t~~w~~l~~~~--~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~---------~s~E~y-P~~~~~~~~~~~~p~l~~t~ 175 (530)
.+.|+.++..+ +|-.+.. +..+|++||.||... .++.+| |.++ +|. .++- +
T Consensus 69 ~k~W~~~a~FpG~~rnqa~~---------a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~n---sW~-kl~t----~ 131 (381)
T COG3055 69 GKGWTKIADFPGGARNQAVA---------AVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTN---SWH-KLDT----R 131 (381)
T ss_pred CCCceEcccCCCcccccchh---------eeeCCeEEEeeccccCCCCCceEeeeeEEecCCCC---hhh-eecc----c
Confidence 56799998886 4433333 345999999999632 245667 9886 344 3221 1
Q ss_pred cccCCCCCCCccccccCCccceEEEecCC-cEEEEeC-----------------------------------------ce
Q 042680 176 DFLERPGNPKGRFRLENNLYPFVYLLPDG-NVYVFAN-----------------------------------------NR 213 (530)
Q Consensus 176 d~~~~~~~~~~~~~~~~~~Yp~~~llp~G-~lfv~Gg-----------------------------------------~~ 213 (530)
.|+.-. -+....+++ +|+++|| ..
T Consensus 132 -------sP~gl~-------G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~e 197 (381)
T COG3055 132 -------SPTGLV-------GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKE 197 (381)
T ss_pred -------cccccc-------cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccc
Confidence 122211 233445555 9999998 14
Q ss_pred EEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCC--cEE
Q 042680 214 SVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALD--DCA 291 (530)
Q Consensus 214 ~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~--s~~ 291 (530)
+..|||.+|+|. .+-..| -++.+|++++. -+.++.++-|--. |.++ -+.
T Consensus 198 v~sy~p~~n~W~-~~G~~p----f~~~aGsa~~~-----------~~n~~~lInGEiK-------------pGLRt~~~k 248 (381)
T COG3055 198 VLSYDPSTNQWR-NLGENP----FYGNAGSAVVI-----------KGNKLTLINGEIK-------------PGLRTAEVK 248 (381)
T ss_pred ccccccccchhh-hcCcCc----ccCccCcceee-----------cCCeEEEEcceec-------------CCcccccee
Confidence 789999999997 454444 46777877753 2567777766421 2222 345
Q ss_pred EEEcCCCCCcceec-CCCCccccc------eeeeecCCeEEEEcCCCCC-C-----CCcccCCCCC---cccEEecCCCC
Q 042680 292 RMVVTSPNPEWKIE-KMPAPRTMA------DGVLLPNGEVLIINGADLG-S-----GGWHCADKPS---LKPMLYRPNAP 355 (530)
Q Consensus 292 ~~dp~~~~~~W~~~-~M~~~R~~~------~~vvLpdG~VlViGG~~~g-~-----~g~~~~~~p~---~~~eiYDP~t~ 355 (530)
+++....+-+|... ++|.+-... ..-=-.+|.++|.||+..- . .|.-.+.+.+ ..-|+|=-+.+
T Consensus 249 ~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g 328 (381)
T COG3055 249 QADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNG 328 (381)
T ss_pred EEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCC
Confidence 56766556789886 555443221 1111248899999997631 0 1111222211 22344433477
Q ss_pred CCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCC
Q 042680 356 EGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDND 393 (530)
Q Consensus 356 ~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~ 393 (530)
.|..+..++.++.|- +.+.-.++||++||....
T Consensus 329 ---~Wk~~GeLp~~l~YG--~s~~~nn~vl~IGGE~~~ 361 (381)
T COG3055 329 ---SWKIVGELPQGLAYG--VSLSYNNKVLLIGGETSG 361 (381)
T ss_pred ---ceeeecccCCCccce--EEEecCCcEEEEccccCC
Confidence 999999999999984 334458999999998655
No 32
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.55 E-value=2.9e-06 Score=87.06 Aligned_cols=229 Identities=18% Similarity=0.220 Sum_probs=126.5
Q ss_pred cEEEccCCcch-heeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEc
Q 042680 36 SWELISQNAGI-SAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKAL 114 (530)
Q Consensus 36 ~w~~~~~~~~v-~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l 114 (530)
.|+.+..=.+. +-..+... -+||+|+|++..-..+ .. + --...++.|||.+|+|..+
T Consensus 71 ~W~~~a~FpG~~rnqa~~a~-~~~kLyvFgG~Gk~~~--~~------------~-------~~~nd~Y~y~p~~nsW~kl 128 (381)
T COG3055 71 GWTKIADFPGGARNQAVAAV-IGGKLYVFGGYGKSVS--SS------------P-------QVFNDAYRYDPSTNSWHKL 128 (381)
T ss_pred CceEcccCCCcccccchhee-eCCeEEEeeccccCCC--CC------------c-------eEeeeeEEecCCCChhhee
Confidence 67776543332 22222222 5899999999753211 10 1 1246789999999999999
Q ss_pred cccCCcccccceeccCCcEEEccCCeEEEeccCCCC--------------------------------------cEEEE-
Q 042680 115 KVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAF--------------------------------------SYEYV- 155 (530)
Q Consensus 115 ~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~--------------------------------------s~E~y- 155 (530)
....++--.++.. ..+.+.+|++.||.+.. .+..|
T Consensus 129 ~t~sP~gl~G~~~------~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~ 202 (381)
T COG3055 129 DTRSPTGLVGAST------FSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYD 202 (381)
T ss_pred cccccccccccee------EecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccc
Confidence 8776554333322 24645599999997520 11223
Q ss_pred cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceE---EEecCCcEEEEeC------c--eEEEEeCC--CC
Q 042680 156 PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFV---YLLPDGNVYVFAN------N--RSVVHDPK--AN 222 (530)
Q Consensus 156 P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~---~llp~G~lfv~Gg------~--~~e~yDp~--tn 222 (530)
|+++ .|. ...++.+||++ .+.-+++|.++-| + .+.++|.. .-
T Consensus 203 p~~n---~W~----------------------~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~ 257 (381)
T COG3055 203 PSTN---QWR----------------------NLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNL 257 (381)
T ss_pred cccc---hhh----------------------hcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCce
Confidence 3332 111 11124455553 2223555666655 2 24455655 34
Q ss_pred eEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccccc--cc-----CCcEEEEEc
Q 042680 223 KIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFV--NA-----LDDCARMVV 295 (530)
Q Consensus 223 ~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~--~a-----~~s~~~~dp 295 (530)
+|. .++++|.. .....-|-+= +-..+.+++++|.||.+-.....+..++.+. +. .+.+..+|
T Consensus 258 ~w~-~l~~lp~~-~~~~~eGvAG--------af~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d- 326 (381)
T COG3055 258 KWL-KLSDLPAP-IGSNKEGVAG--------AFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD- 326 (381)
T ss_pred eee-eccCCCCC-CCCCccccce--------eccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc-
Confidence 787 78777742 2221111111 0122358999999997521101000011111 01 12344444
Q ss_pred CCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCC
Q 042680 296 TSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADL 332 (530)
Q Consensus 296 ~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~ 332 (530)
++.|+.. .||.++.++.++.. +++||+|||...
T Consensus 327 ---~g~Wk~~GeLp~~l~YG~s~~~-nn~vl~IGGE~~ 360 (381)
T COG3055 327 ---NGSWKIVGELPQGLAYGVSLSY-NNKVLLIGGETS 360 (381)
T ss_pred ---CCceeeecccCCCccceEEEec-CCcEEEEccccC
Confidence 5899998 99999999998875 899999999864
No 33
>smart00612 Kelch Kelch domain.
Probab=98.37 E-value=3.9e-07 Score=66.18 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=38.0
Q ss_pred eEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCccccccee
Q 042680 323 EVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANL 378 (530)
Q Consensus 323 ~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~L 378 (530)
+|||+||... ......+|+|||.++ +|+.+++|+.+|.+|+++++
T Consensus 1 ~iyv~GG~~~--------~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDG--------GQRLKSVEVYDPETN---KWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCC--------CceeeeEEEECCCCC---eEccCCCCCCccccceEEEe
Confidence 5899999752 123567899999999 99999999999999998776
No 34
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.36 E-value=6.8e-06 Score=87.26 Aligned_cols=204 Identities=19% Similarity=0.323 Sum_probs=127.3
Q ss_pred CCeEEEeccCCC---CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeC--
Q 042680 138 DGSFLVYGGRDA---FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN-- 211 (530)
Q Consensus 138 dG~v~VvGG~~~---~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg-- 211 (530)
.--|+|+||-+. .....| .+++ +| .+|-.. .| -+... -.|.++...-+||+|||
T Consensus 42 kELiviFGGGNEGiiDELHvYNTatn---qW--f~Pavr--GD------iPpgc-------AA~GfvcdGtrilvFGGMv 101 (830)
T KOG4152|consen 42 KELIVIFGGGNEGIIDELHVYNTATN---QW--FAPAVR--GD------IPPGC-------AAFGFVCDGTRILVFGGMV 101 (830)
T ss_pred eeeEEEecCCcccchhhhhhhccccc---ee--ecchhc--CC------CCCch-------hhcceEecCceEEEEccEe
Confidence 566888898764 245566 6654 34 333221 11 12111 13567777889999999
Q ss_pred ----ceEEEEeCCCCeEEE-Ec-cCCC-CCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccccc
Q 042680 212 ----NRSVVHDPKANKIIR-EF-PQLP-GGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFV 284 (530)
Q Consensus 212 ----~~~e~yDp~tn~w~~-~~-p~mp-~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~ 284 (530)
.+-++|....-+|.. .+ |..| .++.-.|+-|.+..| +..|-|++||-..+... ...+.
T Consensus 102 EYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl-----------~gnKcYlFGGLaNdseD----pknNv 166 (830)
T KOG4152|consen 102 EYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSL-----------VGNKCYLFGGLANDSED----PKNNV 166 (830)
T ss_pred eeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEE-----------eccEeEEeccccccccC----ccccc
Confidence 245778877777751 22 2222 123335666666543 47899999997432211 11223
Q ss_pred c-cCCcEEEEEcCCCC--Ccceec----CCCCccccceeeeec-----CCeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680 285 N-ALDDCARMVVTSPN--PEWKIE----KMPAPRTMADGVLLP-----NGEVLIINGADLGSGGWHCADKPSLKPMLYRP 352 (530)
Q Consensus 285 ~-a~~s~~~~dp~~~~--~~W~~~----~M~~~R~~~~~vvLp-----dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP 352 (530)
| -+++...+++.... -.|... .+|.+|-.|.+|+.- .-|++|.||.. |.. +.....-|-
T Consensus 167 PrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~-G~R--------LgDLW~Ldl 237 (830)
T KOG4152|consen 167 PRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS-GCR--------LGDLWTLDL 237 (830)
T ss_pred chhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc-ccc--------ccceeEEec
Confidence 3 46777777765311 258762 689999999999872 23899999986 432 224456677
Q ss_pred CCCCCCceEEe---cCCCCCCcccccceecCCCeEEEcCCC
Q 042680 353 NAPEGQRFAEL---APTDIPRMYHSVANLLPDGKVFVGGSN 390 (530)
Q Consensus 353 ~t~~g~~Wt~l---a~~~~~R~yHS~a~LLpdGrVlv~GG~ 390 (530)
++- .|++. .-.+.||.-||+.++ ..|.||.||-
T Consensus 238 ~Tl---~W~kp~~~G~~PlPRSLHsa~~I--GnKMyvfGGW 273 (830)
T KOG4152|consen 238 DTL---TWNKPSLSGVAPLPRSLHSATTI--GNKMYVFGGW 273 (830)
T ss_pred cee---ecccccccCCCCCCcccccceee--cceeEEecce
Confidence 777 78742 344678999998777 9999999995
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.33 E-value=4.2e-07 Score=66.79 Aligned_cols=47 Identities=26% Similarity=0.532 Sum_probs=38.8
Q ss_pred ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCC
Q 042680 310 PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD 367 (530)
Q Consensus 310 ~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~ 367 (530)
+|..+.++++ +++|||+||... ...+..++|+|||.++ +|+.+++|+
T Consensus 1 pR~~~~~~~~-~~~iyv~GG~~~-------~~~~~~~v~~yd~~~~---~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVV-GNKIYVIGGYDG-------NNQPTNSVEVYDPETN---TWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEE-TTEEEEEEEBES-------TSSBEEEEEEEETTTT---EEEEEEEES
T ss_pred CCccCEEEEE-CCEEEEEeeecc-------cCceeeeEEEEeCCCC---EEEEcCCCC
Confidence 5888888886 999999999862 1345678999999999 999999885
No 36
>PF13964 Kelch_6: Kelch motif
Probab=98.10 E-value=5.6e-06 Score=61.86 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=31.5
Q ss_pred eEEEecCCcEEEEeCc--------eEEEEeCCCCeEEEEccCCCC
Q 042680 197 FVYLLPDGNVYVFANN--------RSVVHDPKANKIIREFPQLPG 233 (530)
Q Consensus 197 ~~~llp~G~lfv~Gg~--------~~e~yDp~tn~w~~~~p~mp~ 233 (530)
+..+..+|+|||+||. ++++||+++++|. .+++||.
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~mp~ 48 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWE-QLPPMPT 48 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEE-ECCCCCC
Confidence 5567889999999994 5799999999999 8999983
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.97 E-value=6.4e-06 Score=61.16 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=30.0
Q ss_pred ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCC
Q 042680 310 PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD 367 (530)
Q Consensus 310 ~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~ 367 (530)
+|..|+++.+.+++|||+||.... .......++||++++ +|+.+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~-------~~~~~d~~~~d~~~~---~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS-------GSPLNDLWIFDIETN---TWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--------TEE---EEEEETTTT---EEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCC-------CcccCCEEEEECCCC---EEEECCCCC
Confidence 689999999888999999998621 124567899999999 999997775
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.85 E-value=3.6e-05 Score=57.31 Aligned_cols=49 Identities=18% Similarity=0.382 Sum_probs=35.7
Q ss_pred ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCC
Q 042680 310 PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD 367 (530)
Q Consensus 310 ~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~ 367 (530)
+|..|.+++ +|+||||+||...+ ........+++||++++ +|+.+++|.
T Consensus 1 ~r~~hs~~~-~~~kiyv~GG~~~~-----~~~~~~~~v~~~d~~t~---~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVV-LDGKIYVFGGYGTD-----NGGSSSNDVWVFDTETN---QWTELSPMG 49 (49)
T ss_pred CccceEEEE-ECCEEEEECCcccC-----CCCcccceeEEEECCCC---EEeecCCCC
Confidence 566677665 59999999998111 11223457899999999 999988763
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.85 E-value=2e-05 Score=57.74 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=30.9
Q ss_pred eEEEecCCcEEEEeC--------ceEEEEeCCCCeEEEEccCCC
Q 042680 197 FVYLLPDGNVYVFAN--------NRSVVHDPKANKIIREFPQLP 232 (530)
Q Consensus 197 ~~~llp~G~lfv~Gg--------~~~e~yDp~tn~w~~~~p~mp 232 (530)
+..+..+++||++|| +++++||+.+|+|. .+|+||
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWE-ELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEE-EEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEE-EcCCCC
Confidence 567888999999999 36899999999999 788876
No 40
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.77 E-value=3.8e-05 Score=57.17 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccce
Q 042680 321 NGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVAN 377 (530)
Q Consensus 321 dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~ 377 (530)
+++|||+||.... .........+||+.++ +|+++++++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~------~~~~~nd~~~~~~~~~---~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDD------GGTRLNDVWVFDLDTN---TWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCC------CCCEecCEEEEECCCC---EEEECCCCCCCccceEEEE
Confidence 5799999997621 1233567899999999 9999999999999998765
No 41
>smart00612 Kelch Kelch domain.
Probab=97.76 E-value=3.6e-05 Score=55.68 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=36.9
Q ss_pred EEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCC
Q 042680 262 EVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNG 322 (530)
Q Consensus 262 kI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG 322 (530)
+||++||.... ..++++++|||.. ++|+.. +|+.+|..++++++ +|
T Consensus 1 ~iyv~GG~~~~------------~~~~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~-~g 47 (47)
T smart00612 1 KIYVVGGFDGG------------QRLKSVEVYDPET--NKWTPLPSMPTPRSGHGVAVI-NG 47 (47)
T ss_pred CEEEEeCCCCC------------ceeeeEEEECCCC--CeEccCCCCCCccccceEEEe-CC
Confidence 58999997521 2467899999984 999988 99999999988876 54
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.64 E-value=0.00011 Score=54.68 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=31.9
Q ss_pred cceEEEecCCcEEEEeCc----------eEEEEeCCCCeEEEEccCCC
Q 042680 195 YPFVYLLPDGNVYVFANN----------RSVVHDPKANKIIREFPQLP 232 (530)
Q Consensus 195 Yp~~~llp~G~lfv~Gg~----------~~e~yDp~tn~w~~~~p~mp 232 (530)
|.|..+++++||||+||. +.++||+.+++|. .+++||
T Consensus 3 ~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~-~~~~~g 49 (49)
T PF07646_consen 3 YGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWT-ELSPMG 49 (49)
T ss_pred cceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEe-ecCCCC
Confidence 568889999999999995 5799999999998 777664
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.35 E-value=0.0004 Score=51.36 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=22.1
Q ss_pred EEecCCcEEEEeCc--------eEEEEeCCCCeEEEEccCCC
Q 042680 199 YLLPDGNVYVFANN--------RSVVHDPKANKIIREFPQLP 232 (530)
Q Consensus 199 ~llp~G~lfv~Gg~--------~~e~yDp~tn~w~~~~p~mp 232 (530)
..+.+++||++||. ++++||+++++|+ ++++||
T Consensus 8 ~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~-~~~~~P 48 (49)
T PF13418_consen 8 VSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWT-RLPSMP 48 (49)
T ss_dssp EEE-TTEEEEE--EEE-TEE---EEEEETTTTEEE-E--SS-
T ss_pred EEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEE-ECCCCC
Confidence 34457999999993 6899999999999 788876
No 44
>PLN02772 guanylate kinase
Probab=97.21 E-value=0.00082 Score=71.28 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=55.3
Q ss_pred CccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE---EecCCCCCCcccccceecCCCeEE
Q 042680 309 APRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA---ELAPTDIPRMYHSVANLLPDGKVF 385 (530)
Q Consensus 309 ~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt---~la~~~~~R~yHS~a~LLpdGrVl 385 (530)
.+|..++++.. ++++||+||.+.+ ......+.+||+.+. +|+ .+...+.||-.|| |+++.|.|||
T Consensus 23 ~~~~~~tav~i-gdk~yv~GG~~d~-------~~~~~~v~i~D~~t~---~W~~P~V~G~~P~~r~GhS-a~v~~~~ril 90 (398)
T PLN02772 23 KPKNRETSVTI-GDKTYVIGGNHEG-------NTLSIGVQILDKITN---NWVSPIVLGTGPKPCKGYS-AVVLNKDRIL 90 (398)
T ss_pred CCCCcceeEEE-CCEEEEEcccCCC-------ccccceEEEEECCCC---cEecccccCCCCCCCCcce-EEEECCceEE
Confidence 37788888876 9999999997521 012346889999999 998 4678899999998 4555899999
Q ss_pred EcCCC
Q 042680 386 VGGSN 390 (530)
Q Consensus 386 v~GG~ 390 (530)
|.++.
T Consensus 91 v~~~~ 95 (398)
T PLN02772 91 VIKKG 95 (398)
T ss_pred EEeCC
Confidence 99875
No 45
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.06 E-value=0.0013 Score=48.92 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=37.1
Q ss_pred cEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeee
Q 042680 261 AEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVL 318 (530)
Q Consensus 261 gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vv 318 (530)
++|||+||.+... ...++++.+||+. +.+|+.. ++|.+|..|++++
T Consensus 2 ~~~~vfGG~~~~~----------~~~~nd~~~~~~~--~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 2 NKLYVFGGYDDDG----------GTRLNDVWVFDLD--TNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CEEEEECCcCCCC----------CCEecCEEEEECC--CCEEEECCCCCCCccceEEEE
Confidence 6899999986211 1357889999997 5899997 9999999999875
No 46
>PRK13684 Ycf48-like protein; Provisional
Probab=96.64 E-value=1.1 Score=46.91 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=43.5
Q ss_pred CCcceecCCCCc---cccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecC-CCCCCcccc
Q 042680 299 NPEWKIEKMPAP---RTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAP-TDIPRMYHS 374 (530)
Q Consensus 299 ~~~W~~~~M~~~---R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~-~~~~R~yHS 374 (530)
...|+...++.. ....+....++++++++|.. |. +|- ..+.|++|+.+.. ...+..+..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~--G~--------------v~~-S~d~G~tW~~~~~~~~~~~~~~~ 307 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN--GT--------------LLV-SKDGGKTWEKDPVGEEVPSNFYK 307 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEcCC--Ce--------------EEE-eCCCCCCCeECCcCCCCCcceEE
Confidence 568987544422 22334455678999988753 21 221 2455679998653 334444444
Q ss_pred cceecCCCeEEEcCCC
Q 042680 375 VANLLPDGKVFVGGSN 390 (530)
Q Consensus 375 ~a~LLpdGrVlv~GG~ 390 (530)
.+...++++|++|..
T Consensus 308 -~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 308 -IVFLDPEKGFVLGQR 322 (334)
T ss_pred -EEEeCCCceEEECCC
Confidence 344578899998874
No 47
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.42 E-value=4.5 Score=43.01 Aligned_cols=132 Identities=12% Similarity=0.172 Sum_probs=68.4
Q ss_pred cCCcEEEEeCc-eEEEEeCCCCeEEEEccC-CCCC-CCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc
Q 042680 202 PDGNVYVFANN-RSVVHDPKANKIIREFPQ-LPGG-ARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE 278 (530)
Q Consensus 202 p~G~lfv~Gg~-~~e~yDp~tn~w~~~~p~-mp~~-~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~ 278 (530)
.+|+||+..++ ....+|+++++.....+. .|.. .+.. +...+ .++.||+..+. +
T Consensus 159 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~--~sP~v-------------~~~~v~~~~~~--g------ 215 (394)
T PRK11138 159 SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE--SAPAT-------------AFGGAIVGGDN--G------ 215 (394)
T ss_pred ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC--CCCEE-------------ECCEEEEEcCC--C------
Confidence 48888887554 578899999863322221 1100 0111 01111 25667664432 1
Q ss_pred ccccccccCCcEEEEEcCCCCCcceec-CCCCc--------cccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEE
Q 042680 279 EEKRFVNALDDCARMVVTSPNPEWKIE-KMPAP--------RTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPML 349 (530)
Q Consensus 279 ~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~--------R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~ei 349 (530)
.+..+|+.+....|+.. ..+.. +....-++ .+|.||+.+.. | ...+
T Consensus 216 ----------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~--g------------~l~a 270 (394)
T PRK11138 216 ----------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAYN--G------------NLVA 270 (394)
T ss_pred ----------EEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEcC--C------------eEEE
Confidence 23456776655678764 33321 11233343 48999986532 1 4568
Q ss_pred ecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680 350 YRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGS 389 (530)
Q Consensus 350 YDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG 389 (530)
+|+++. ...|+.-- .. +.+.+ ..+|+||+...
T Consensus 271 ld~~tG-~~~W~~~~--~~---~~~~~--~~~~~vy~~~~ 302 (394)
T PRK11138 271 LDLRSG-QIVWKREY--GS---VNDFA--VDGGRIYLVDQ 302 (394)
T ss_pred EECCCC-CEEEeecC--CC---ccCcE--EECCEEEEEcC
Confidence 888765 12687521 11 12222 34899999764
No 48
>PLN02772 guanylate kinase
Probab=95.31 E-value=0.048 Score=58.10 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=49.0
Q ss_pred CCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCccccceeeeecCCeEEEEcCCC
Q 042680 259 VDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTMADGVLLPNGEVLIINGAD 331 (530)
Q Consensus 259 ~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~~~~vvLpdG~VlViGG~~ 331 (530)
+..++||+||.+.+. .+.+.+.+||.. +.+|..- .-|.+|-.|+++++-|++|||+++..
T Consensus 33 igdk~yv~GG~~d~~-----------~~~~~v~i~D~~--t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 33 IGDKTYVIGGNHEGN-----------TLSIGVQILDKI--TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred ECCEEEEEcccCCCc-----------cccceEEEEECC--CCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 489999999986321 246778999987 5999862 68999999999999999999999743
No 49
>PF13854 Kelch_5: Kelch motif
Probab=94.33 E-value=0.089 Score=37.73 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=29.0
Q ss_pred CCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680 307 MPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA 354 (530)
Q Consensus 307 M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t 354 (530)
+|.+|..|++++. +++|||.||... . .........+||..+
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~~-~-----~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYSG-N-----NNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCccC-C-----CCCEECcEEEEECCC
Confidence 5789999999986 899999999862 1 122234566776544
No 50
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.14 E-value=8.7 Score=40.30 Aligned_cols=77 Identities=17% Similarity=0.301 Sum_probs=41.9
Q ss_pred EEEEEcCCCCCcceec-CCCCcc--------ccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce
Q 042680 290 CARMVVTSPNPEWKIE-KMPAPR--------TMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF 360 (530)
Q Consensus 290 ~~~~dp~~~~~~W~~~-~M~~~R--------~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W 360 (530)
+..+|+.+....|+.. ..+..+ .....+ +.+++||+.+... ...+||+++. ...|
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~-~~~~~vy~~~~~g--------------~l~a~d~~tG-~~~W 265 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV-VDGGQVYAVSYQG--------------RVAALDLRSG-RVLW 265 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE-EECCEEEEEEcCC--------------EEEEEECCCC-cEEE
Confidence 4567776545568754 322211 122323 3588888865321 4678998765 1358
Q ss_pred EEecCCCCCCcccccceecCCCeEEEcCC
Q 042680 361 AELAPTDIPRMYHSVANLLPDGKVFVGGS 389 (530)
Q Consensus 361 t~la~~~~~R~yHS~a~LLpdGrVlv~GG 389 (530)
+.-. ..+.+.+ +.|++||+...
T Consensus 266 ~~~~-----~~~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 266 KRDA-----SSYQGPA--VDDNRLYVTDA 287 (377)
T ss_pred eecc-----CCccCce--EeCCEEEEECC
Confidence 6421 1222223 34899998764
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.95 E-value=3.7 Score=43.67 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=71.8
Q ss_pred ecCCcEEEEeC-ceEEEEeCCCCe--EEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680 201 LPDGNVYVFAN-NRSVVHDPKANK--IIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG 277 (530)
Q Consensus 201 lp~G~lfv~Gg-~~~e~yDp~tn~--w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~ 277 (530)
+.+|.||+.+. .....+|+++++ |.+.+.. . ....+ .+++||++...
T Consensus 254 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-------~--~~~~~-------------~~~~vy~~~~~-------- 303 (394)
T PRK11138 254 VVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-------V--NDFAV-------------DGGRIYLVDQN-------- 303 (394)
T ss_pred EECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-------c--cCcEE-------------ECCEEEEEcCC--------
Confidence 34899998764 467889999875 5432210 1 01111 26788886431
Q ss_pred cccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCC
Q 042680 278 EEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEG 357 (530)
Q Consensus 278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g 357 (530)
..+..+|+.+....|+...+. .+...+.++ -+|+||+.... | ...+.|+++..
T Consensus 304 ----------g~l~ald~~tG~~~W~~~~~~-~~~~~sp~v-~~g~l~v~~~~--G------------~l~~ld~~tG~- 356 (394)
T PRK11138 304 ----------DRVYALDTRGGVELWSQSDLL-HRLLTAPVL-YNGYLVVGDSE--G------------YLHWINREDGR- 356 (394)
T ss_pred ----------CeEEEEECCCCcEEEcccccC-CCcccCCEE-ECCEEEEEeCC--C------------EEEEEECCCCC-
Confidence 125678887655678765332 233444454 49999875432 1 35677887751
Q ss_pred CceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680 358 QRFAELAPTDIPRMYHSVANLLPDGKVFVGGS 389 (530)
Q Consensus 358 ~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG 389 (530)
-.|+.- ....+.+.+-++. ||+|||..-
T Consensus 357 ~~~~~~--~~~~~~~s~P~~~--~~~l~v~t~ 384 (394)
T PRK11138 357 FVAQQK--VDSSGFLSEPVVA--DDKLLIQAR 384 (394)
T ss_pred EEEEEE--cCCCcceeCCEEE--CCEEEEEeC
Confidence 135431 1112334444444 999999854
No 52
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=91.69 E-value=18 Score=37.24 Aligned_cols=158 Identities=19% Similarity=0.302 Sum_probs=90.9
Q ss_pred EecCCcEEEEeC--ceEEEEeCCCC------eEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccC
Q 042680 200 LLPDGNVYVFAN--NRSVVHDPKAN------KIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVR 271 (530)
Q Consensus 200 llp~G~lfv~Gg--~~~e~yDp~tn------~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~ 271 (530)
-.|+|+..+.|| +..-+|+..+. ...+++ + +.+.|- ...-.+ .++.|+.--|
T Consensus 105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l---~-gHtgyl--ScC~f~-----------dD~~ilT~SG--- 164 (343)
T KOG0286|consen 105 YSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL---A-GHTGYL--SCCRFL-----------DDNHILTGSG--- 164 (343)
T ss_pred ECCCCCeEEecCcCceeEEEecccccccccceeeeee---c-Ccccee--EEEEEc-----------CCCceEecCC---
Confidence 457999988998 56788998865 222222 3 234552 222222 1566654333
Q ss_pred CccccccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeec-CCeEEEEcCCCCCCCCcccCCCCCcccEE
Q 042680 272 EGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLP-NGEVLIINGADLGSGGWHCADKPSLKPML 349 (530)
Q Consensus 272 ~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLp-dG~VlViGG~~~g~~g~~~~~~p~~~~ei 349 (530)
..+|...|++. .+=..+ .=+.+-++.=. +.| |++.||.||.+. ...+
T Consensus 165 ---------------D~TCalWDie~--g~~~~~f~GH~gDV~sls-l~p~~~ntFvSg~cD~-------------~akl 213 (343)
T KOG0286|consen 165 ---------------DMTCALWDIET--GQQTQVFHGHTGDVMSLS-LSPSDGNTFVSGGCDK-------------SAKL 213 (343)
T ss_pred ---------------CceEEEEEccc--ceEEEEecCCcccEEEEe-cCCCCCCeEEeccccc-------------ceee
Confidence 13688888874 333333 33333344333 347 999999999862 4678
Q ss_pred ecCCCCCC-CceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCC--CCcceEEEEcCCCCCCc
Q 042680 350 YRPNAPEG-QRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKF--PTELRLEKFTPPYLAPE 418 (530)
Q Consensus 350 YDP~t~~g-~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~--~t~~~vE~y~Ppyl~~~ 418 (530)
||-....- |+|.. . -+.-.+....|+|--++.|+++... . -| -....+++|.++-..-|
T Consensus 214 WD~R~~~c~qtF~g----h--esDINsv~ffP~G~afatGSDD~tc-R---lyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 214 WDVRSGQCVQTFEG----H--ESDINSVRFFPSGDAFATGSDDATC-R---LYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred eeccCcceeEeecc----c--ccccceEEEccCCCeeeecCCCcee-E---EEeecCCcEEeeeccCcccCC
Confidence 88877611 22321 1 1112345567999999999975421 1 12 12346899997776544
No 53
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=91.06 E-value=6.9 Score=38.19 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=82.1
Q ss_pred CCcEEEEeCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccc
Q 042680 203 DGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKR 282 (530)
Q Consensus 203 ~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 282 (530)
||-|.+.......++||.|++|. .+|+.+. ++.++... ...+-..+ .. .+=||+.+.... ..
T Consensus 5 nGLlc~~~~~~~~V~NP~T~~~~-~LP~~~~-~~~~~~~~-~~~~G~d~--~~---~~YKVv~~~~~~-~~--------- 66 (230)
T TIGR01640 5 DGLICFSYGKRLVVWNPSTGQSR-WLPTPKS-RRSNKESD-TYFLGYDP--IE---KQYKVLCFSDRS-GN--------- 66 (230)
T ss_pred ceEEEEecCCcEEEECCCCCCEE-ecCCCCC-cccccccc-eEEEeecc--cC---CcEEEEEEEeec-CC---------
Confidence 56665555567789999999998 7876442 22222111 11111111 11 244777775431 10
Q ss_pred ccccCCcEEEEEcCCCCCcceec-CCCC-ccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce
Q 042680 283 FVNALDDCARMVVTSPNPEWKIE-KMPA-PRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF 360 (530)
Q Consensus 283 ~~~a~~s~~~~dp~~~~~~W~~~-~M~~-~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W 360 (530)
.....+++|+..+ +.|+.. ..+. -......+.+ ||.+|.+.-...+ ++......||-.+. +|
T Consensus 67 --~~~~~~~Vys~~~--~~Wr~~~~~~~~~~~~~~~v~~-~G~lyw~~~~~~~--------~~~~~IvsFDl~~E---~f 130 (230)
T TIGR01640 67 --RNQSEHQVYTLGS--NSWRTIECSPPHHPLKSRGVCI-NGVLYYLAYTLKT--------NPDYFIVSFDVSSE---RF 130 (230)
T ss_pred --CCCccEEEEEeCC--CCccccccCCCCccccCCeEEE-CCEEEEEEEECCC--------CCcEEEEEEEcccc---eE
Confidence 0124689999874 799875 2221 1111224554 9999988642211 11225788999999 99
Q ss_pred EEecCCCCCCc-cc-ccceecCCCeEEEcCCC
Q 042680 361 AELAPTDIPRM-YH-SVANLLPDGKVFVGGSN 390 (530)
Q Consensus 361 t~la~~~~~R~-yH-S~a~LLpdGrVlv~GG~ 390 (530)
...-+++..+. .+ ...+..-+|++-++...
T Consensus 131 ~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~ 162 (230)
T TIGR01640 131 KEFIPLPCGNSDSVDYLSLINYKGKLAVLKQK 162 (230)
T ss_pred eeeeecCccccccccceEEEEECCEEEEEEec
Confidence 95223333332 11 11222227888776653
No 54
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.95 E-value=6 Score=38.86 Aligned_cols=156 Identities=18% Similarity=0.246 Sum_probs=78.7
Q ss_pred cCCcEEEEeCceEEEEeCCCCeEEEEccCCCCC--CCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccc
Q 042680 202 PDGNVYVFANNRSVVHDPKANKIIREFPQLPGG--ARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEE 279 (530)
Q Consensus 202 p~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~--~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~ 279 (530)
++|++|+.......++|+.++++. .+...+.. ....|. ..++ - .+|.||+.--.......
T Consensus 50 ~~g~l~v~~~~~~~~~d~~~g~~~-~~~~~~~~~~~~~~~N-D~~v-d-----------~~G~ly~t~~~~~~~~~---- 111 (246)
T PF08450_consen 50 PDGRLYVADSGGIAVVDPDTGKVT-VLADLPDGGVPFNRPN-DVAV-D-----------PDGNLYVTDSGGGGASG---- 111 (246)
T ss_dssp TTSEEEEEETTCEEEEETTTTEEE-EEEEEETTCSCTEEEE-EEEE-------------TTS-EEEEEECCBCTTC----
T ss_pred cCCEEEEEEcCceEEEecCCCcEE-EEeeccCCCcccCCCc-eEEE-c-----------CCCCEEEEecCCCcccc----
Confidence 689999998888888899999987 44443211 122221 1122 1 37888875321101000
Q ss_pred cccccccCCcEEEEEcCCCCCcceec--CCCCccccceeeeecCCeE-EEEcCCCCCCCCcccCCCCCcccEEecCCCCC
Q 042680 280 EKRFVNALDDCARMVVTSPNPEWKIE--KMPAPRTMADGVLLPNGEV-LIINGADLGSGGWHCADKPSLKPMLYRPNAPE 356 (530)
Q Consensus 280 ~~~~~~a~~s~~~~dp~~~~~~W~~~--~M~~~R~~~~~vvLpdG~V-lViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~ 356 (530)
.....+.|+++. .+.+.. .|..+. ..+.-|||+. |+..-.. .....||+..+.
T Consensus 112 -----~~~g~v~~~~~~---~~~~~~~~~~~~pN---Gi~~s~dg~~lyv~ds~~-------------~~i~~~~~~~~~ 167 (246)
T PF08450_consen 112 -----IDPGSVYRIDPD---GKVTVVADGLGFPN---GIAFSPDGKTLYVADSFN-------------GRIWRFDLDADG 167 (246)
T ss_dssp -----GGSEEEEEEETT---SEEEEEEEEESSEE---EEEEETTSSEEEEEETTT-------------TEEEEEEEETTT
T ss_pred -----ccccceEEECCC---CeEEEEecCccccc---ceEECCcchheeeccccc-------------ceeEEEeccccc
Confidence 001346778765 333332 344332 3344588974 4543221 257788887652
Q ss_pred CCceE---EecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCC
Q 042680 357 GQRFA---ELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPP 413 (530)
Q Consensus 357 g~~Wt---~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Pp 413 (530)
+ +++ .+........+.--.++-.+|+|||+.-. ..+|.+|+|.
T Consensus 168 ~-~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-------------~~~I~~~~p~ 213 (246)
T PF08450_consen 168 G-ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-------------GGRIVVFDPD 213 (246)
T ss_dssp C-CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-------------TTEEEEEETT
T ss_pred c-ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-------------CCEEEEECCC
Confidence 2 232 22222222111222445679999998321 1257888886
No 55
>PF13854 Kelch_5: Kelch motif
Probab=89.76 E-value=0.27 Score=35.23 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCCCCcccccceecCCCeEEEcCCCCC
Q 042680 366 TDIPRMYHSVANLLPDGKVFVGGSNDN 392 (530)
Q Consensus 366 ~~~~R~yHS~a~LLpdGrVlv~GG~~~ 392 (530)
++.+|..||+++. +++|||.||...
T Consensus 1 ~P~~R~~hs~~~~--~~~iyi~GG~~~ 25 (42)
T PF13854_consen 1 IPSPRYGHSAVVV--GNNIYIFGGYSG 25 (42)
T ss_pred CCCCccceEEEEE--CCEEEEEcCccC
Confidence 3678999998887 999999999873
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.75 E-value=17 Score=39.50 Aligned_cols=177 Identities=15% Similarity=0.213 Sum_probs=99.9
Q ss_pred cCceeEEEEeCCCCcEEE-ccccCCcccccceeccCCcEEEccCCeEEEeccCCCCcEEEEcCCCCCCCceEEecccccc
Q 042680 96 DCWCHSIFYDYNKNAVKA-LKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFPFLFET 174 (530)
Q Consensus 96 ~~~a~~~~yDp~t~~w~~-l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~yP~~~~~~~~~~~~p~l~~t 174 (530)
.|++...+|+..+.+.+. ++.+.+.-|+.. | -.||+++..|+..+ -+.+|--+. .. . | ++
T Consensus 45 t~S~rvqly~~~~~~~~k~~srFk~~v~s~~-f--------R~DG~LlaaGD~sG-~V~vfD~k~----r~-i---L-R~ 105 (487)
T KOG0310|consen 45 TSSVRVQLYSSVTRSVRKTFSRFKDVVYSVD-F--------RSDGRLLAAGDESG-HVKVFDMKS----RV-I---L-RQ 105 (487)
T ss_pred ecccEEEEEecchhhhhhhHHhhccceeEEE-e--------ecCCeEEEccCCcC-cEEEecccc----HH-H---H-HH
Confidence 378888999988877655 455555555433 3 23889999887654 244442110 00 1 1 10
Q ss_pred ccccCCCCCCCccccccCCccce---EEEecCCcEEEEeCce--EEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccC
Q 042680 175 QDFLERPGNPKGRFRLENNLYPF---VYLLPDGNVYVFANNR--SVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPL 249 (530)
Q Consensus 175 ~d~~~~~~~~~~~~~~~~~~Yp~---~~llp~G~lfv~Gg~~--~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl 249 (530)
.+ ....|. -+..-++.+|++|+.. ...||..+.....++ . +...|-++++ +.|
T Consensus 106 ~~---------------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l---~-~htDYVR~g~--~~~- 163 (487)
T KOG0310|consen 106 LY---------------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL---S-GHTDYVRCGD--ISP- 163 (487)
T ss_pred Hh---------------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe---c-CCcceeEeec--ccc-
Confidence 00 001121 1233489999999853 566777777653223 3 2456655554 334
Q ss_pred CCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcC
Q 042680 250 YLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIING 329 (530)
Q Consensus 250 ~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG 329 (530)
.++.|++.||.+ + .+-.||.... ..|..+ +...----+.+.||.|.+++.-|
T Consensus 164 ---------~~~hivvtGsYD-g----------------~vrl~DtR~~-~~~v~e-lnhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 164 ---------ANDHIVVTGSYD-G----------------KVRLWDTRSL-TSRVVE-LNHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred ---------CCCeEEEecCCC-c----------------eEEEEEeccC-CceeEE-ecCCCceeeEEEcCCCCEEEEcC
Confidence 368999999987 2 2345676542 256665 22221223457789987777665
Q ss_pred CCCCCCCcccCCCCCcccEEecCCCC
Q 042680 330 ADLGSGGWHCADKPSLKPMLYRPNAP 355 (530)
Q Consensus 330 ~~~g~~g~~~~~~p~~~~eiYDP~t~ 355 (530)
.+ ++-+||-.+.
T Consensus 216 Gn--------------~vkVWDl~~G 227 (487)
T KOG0310|consen 216 GN--------------SVKVWDLTTG 227 (487)
T ss_pred CC--------------eEEEEEecCC
Confidence 33 4678887765
No 57
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.82 E-value=35 Score=35.01 Aligned_cols=123 Identities=22% Similarity=0.252 Sum_probs=72.3
Q ss_pred EEEecCCcEEEE--eCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680 198 VYLLPDGNVYVF--ANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY 275 (530)
Q Consensus 198 ~~llp~G~lfv~--Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~ 275 (530)
+.+.|||.|++. .|+..-+.||.+..-. .+|. |.....-.+ ...+ . --+++-+. .
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~ae-v~p~-P~~~~~gsR-riws----d--------pig~~wit---t----- 250 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAE-VVPQ-PNALKAGSR-RIWS----D--------PIGRAWIT---T----- 250 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcc-eecC-CCccccccc-cccc----C--------ccCcEEEe---c-----
Confidence 457789999998 7787788899987543 3432 322111000 0011 0 14666665 1
Q ss_pred cccccccccccCCcEEEEEcCCCCCcceecCCC--CccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680 276 LGEEEKRFVNALDDCARMVVTSPNPEWKIEKMP--APRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPN 353 (530)
Q Consensus 276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~--~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~ 353 (530)
....++.+|||.. ..|..=++| .+|-+.--|- -.|+|+..-=. ......|||+
T Consensus 251 ---------wg~g~l~rfdPs~--~sW~eypLPgs~arpys~rVD-~~grVW~sea~-------------agai~rfdpe 305 (353)
T COG4257 251 ---------WGTGSLHRFDPSV--TSWIEYPLPGSKARPYSMRVD-RHGRVWLSEAD-------------AGAIGRFDPE 305 (353)
T ss_pred ---------cCCceeeEeCccc--ccceeeeCCCCCCCcceeeec-cCCcEEeeccc-------------cCceeecCcc
Confidence 1234578999985 669875554 4565543332 46788873211 1246789999
Q ss_pred CCCCCceEEecCCCCCCcccc
Q 042680 354 APEGQRFAELAPTDIPRMYHS 374 (530)
Q Consensus 354 t~~g~~Wt~la~~~~~R~yHS 374 (530)
+. +|+++ +++|-...
T Consensus 306 ta---~ftv~---p~pr~n~g 320 (353)
T COG4257 306 TA---RFTVL---PIPRPNSG 320 (353)
T ss_pred cc---eEEEe---cCCCCCCC
Confidence 99 99986 45565433
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=86.41 E-value=21 Score=34.21 Aligned_cols=141 Identities=16% Similarity=0.261 Sum_probs=73.6
Q ss_pred EecCCcEEEE-eCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc
Q 042680 200 LLPDGNVYVF-ANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE 278 (530)
Q Consensus 200 llp~G~lfv~-Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~ 278 (530)
+..+|+||+. +.....+||..+++...... +++. .. ..-+ . .+++||+....
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~~~~--~~---~~~~-~-----------~~~~v~v~~~~--------- 85 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFD-LPGP--IS---GAPV-V-----------DGGRVYVGTSD--------- 85 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEE-CSSC--GG---SGEE-E-----------ETTEEEEEETT---------
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEee-cccc--cc---ceee-e-----------cccccccccce---------
Confidence 3468889988 55678999999986442232 1321 11 1111 1 36788776521
Q ss_pred ccccccccCCcEEEEEcCCCCCccee-c-CCCCcccccee-eeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680 279 EEKRFVNALDDCARMVVTSPNPEWKI-E-KMPAPRTMADG-VLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP 355 (530)
Q Consensus 279 ~~~~~~~a~~s~~~~dp~~~~~~W~~-~-~M~~~R~~~~~-vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~ 355 (530)
..+.++|..+....|+. . .-+..+....+ ..+-++++++ +... .....+|+++.
T Consensus 86 ---------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------g~l~~~d~~tG 142 (238)
T PF13360_consen 86 ---------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV-GTSS-------------GKLVALDPKTG 142 (238)
T ss_dssp ---------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE-EETC-------------SEEEEEETTTT
T ss_pred ---------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEE-Eecc-------------CcEEEEecCCC
Confidence 13567887766678994 4 32333322222 2222445554 4322 14678999876
Q ss_pred CCCceEEecCCCCC-C----cc-cccceecCCCeEEEcCCCC
Q 042680 356 EGQRFAELAPTDIP-R----MY-HSVANLLPDGKVFVGGSND 391 (530)
Q Consensus 356 ~g~~Wt~la~~~~~-R----~y-HS~a~LLpdGrVlv~GG~~ 391 (530)
. ..|+.-...+.. - .. .....++.+|+||++.+..
T Consensus 143 ~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 143 K-LLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp E-EEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred c-EEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 1 147653322110 0 00 1133445578999988754
No 59
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=84.26 E-value=42 Score=32.57 Aligned_cols=118 Identities=16% Similarity=0.239 Sum_probs=63.1
Q ss_pred EEecCCcEEEEeCc-------eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccC
Q 042680 199 YLLPDGNVYVFANN-------RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVR 271 (530)
Q Consensus 199 ~llp~G~lfv~Gg~-------~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~ 271 (530)
-+..+|.||.+... ....||..+.+|. +.-++|... .... ....+.. ++|++-++....
T Consensus 98 ~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~-~~i~~P~~~-~~~~-~~~~L~~----------~~G~L~~v~~~~- 163 (230)
T TIGR01640 98 GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFK-EFIPLPCGN-SDSV-DYLSLIN----------YKGKLAVLKQKK- 163 (230)
T ss_pred eEEECCEEEEEEEECCCCCcEEEEEEEcccceEe-eeeecCccc-cccc-cceEEEE----------ECCEEEEEEecC-
Confidence 45679999998741 4788999999997 322345321 1111 1111211 367766654321
Q ss_pred CccccccccccccccCCcEEEEEcCCC-CCcceec---CCCCccccc----eeeeecCCeEEEEcCCCCCCCCcccCCCC
Q 042680 272 EGLYLGEEEKRFVNALDDCARMVVTSP-NPEWKIE---KMPAPRTMA----DGVLLPNGEVLIINGADLGSGGWHCADKP 343 (530)
Q Consensus 272 ~~~~~~~~~~~~~~a~~s~~~~dp~~~-~~~W~~~---~M~~~R~~~----~~vvLpdG~VlViGG~~~g~~g~~~~~~p 343 (530)
. ...++....++. ...|+.. +|+..+.+. -..+.-+|+|+++-....
T Consensus 164 ~--------------~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~----------- 218 (230)
T TIGR01640 164 D--------------TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN----------- 218 (230)
T ss_pred C--------------CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC-----------
Confidence 0 012444444322 4569874 443232222 133457999999876310
Q ss_pred CcccEEecCCCC
Q 042680 344 SLKPMLYRPNAP 355 (530)
Q Consensus 344 ~~~~eiYDP~t~ 355 (530)
-.-..+|||.++
T Consensus 219 ~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 PFYIFYYNVGEN 230 (230)
T ss_pred ceEEEEEeccCC
Confidence 013679999875
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.59 E-value=22 Score=38.71 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=80.9
Q ss_pred CCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEE-eCceEE
Q 042680 138 DGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVF-ANNRSV 215 (530)
Q Consensus 138 dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~-Gg~~~e 215 (530)
++.+++.||+++ .+..| .+..+ .+...+. .++|.. .+..+|+|.+++. ||+++-
T Consensus 165 ~~hivvtGsYDg-~vrl~DtR~~~--~~v~eln-----------hg~pVe----------~vl~lpsgs~iasAgGn~vk 220 (487)
T KOG0310|consen 165 NDHIVVTGSYDG-KVRLWDTRSLT--SRVVELN-----------HGCPVE----------SVLALPSGSLIASAGGNSVK 220 (487)
T ss_pred CCeEEEecCCCc-eEEEEEeccCC--ceeEEec-----------CCCcee----------eEEEcCCCCEEEEcCCCeEE
Confidence 678999999986 46777 55431 2222221 112221 3466788777775 779999
Q ss_pred EEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEEEEc
Q 042680 216 VHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVV 295 (530)
Q Consensus 216 ~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp 295 (530)
+||..++.- .+..|- + +.-+...|.+. -++.=|+.||-+ . .+-.||.
T Consensus 221 VWDl~~G~q--ll~~~~----~--H~KtVTcL~l~--------s~~~rLlS~sLD--~---------------~VKVfd~ 267 (487)
T KOG0310|consen 221 VWDLTTGGQ--LLTSMF----N--HNKTVTCLRLA--------SDSTRLLSGSLD--R---------------HVKVFDT 267 (487)
T ss_pred EEEecCCce--ehhhhh----c--ccceEEEEEee--------cCCceEeecccc--c---------------ceEEEEc
Confidence 999997642 233332 1 11234444432 245667888876 2 2456774
Q ss_pred CCCCCcceec-CCCCccccceeeeecCCeEEEEcCCC
Q 042680 296 TSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGAD 331 (530)
Q Consensus 296 ~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~ 331 (530)
..|+.. .|.++----++.+-||++.+++|..+
T Consensus 268 ----t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 268 ----TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred ----cceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 447776 66655555566667999999999876
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=82.51 E-value=36 Score=35.59 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=68.0
Q ss_pred cCCcEEEEeC-ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccc
Q 042680 202 PDGNVYVFAN-NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEE 280 (530)
Q Consensus 202 p~G~lfv~Gg-~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~ 280 (530)
.++.||+... ....+||+++++.....+ .. .+ ...++ .+++||++...
T Consensus 240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~----~~--~~p~~-------------~~~~vyv~~~~----------- 288 (377)
T TIGR03300 240 DGGQVYAVSYQGRVAALDLRSGRVLWKRD-AS----SY--QGPAV-------------DDNRLYVTDAD----------- 288 (377)
T ss_pred ECCEEEEEEcCCEEEEEECCCCcEEEeec-cC----Cc--cCceE-------------eCCEEEEECCC-----------
Confidence 4788888753 467889998875321121 11 11 11111 36888886421
Q ss_pred ccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce
Q 042680 281 KRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF 360 (530)
Q Consensus 281 ~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W 360 (530)
..+.++|..+....|+...+.. +.....++ -+++||+.+ .+ | ...++|+.+.. ..|
T Consensus 289 -------G~l~~~d~~tG~~~W~~~~~~~-~~~ssp~i-~g~~l~~~~-~~-G------------~l~~~d~~tG~-~~~ 344 (377)
T TIGR03300 289 -------GVVVALDRRSGSELWKNDELKY-RQLTAPAV-VGGYLVVGD-FE-G------------YLHWLSREDGS-FVA 344 (377)
T ss_pred -------CeEEEEECCCCcEEEccccccC-CccccCEE-ECCEEEEEe-CC-C------------EEEEEECCCCC-EEE
Confidence 1356788765556788754432 23333343 477777643 22 1 35678876651 134
Q ss_pred EEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680 361 AELAPTDIPRMYHSVANLLPDGKVFVGGSN 390 (530)
Q Consensus 361 t~la~~~~~R~yHS~a~LLpdGrVlv~GG~ 390 (530)
+. . ..... +.+.-+ +.|+++|+++.+
T Consensus 345 ~~-~-~~~~~-~~~sp~-~~~~~l~v~~~d 370 (377)
T TIGR03300 345 RL-K-TDGSG-IASPPV-VVGDGLLVQTRD 370 (377)
T ss_pred EE-E-cCCCc-cccCCE-EECCEEEEEeCC
Confidence 32 1 11111 222222 348999988764
No 62
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=82.14 E-value=68 Score=33.42 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=52.6
Q ss_pred eeEEEEeCCCCcEEEccccC-CcccccceeccCCcEEEccCCeEEEeccCCCCcEEEEcCCCCCCCceEEec-ccccccc
Q 042680 99 CHSIFYDYNKNAVKALKVQS-DTWCSSGGLSADGRLVMLSDGSFLVYGGRDAFSYEYVPVEKESNKAAIAFP-FLFETQD 176 (530)
Q Consensus 99 a~~~~yDp~t~~w~~l~~~~-~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~~~s~E~yP~~~~~~~~~~~~p-~l~~t~d 176 (530)
-.+...|+.+.+.+.+.... .....++.. .-+||+.+++.-+.+.++.+|+... +....... ....+..
T Consensus 64 v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~-------~~~~g~~l~vany~~g~v~v~~l~~--~g~l~~~~~~~~~~g~ 134 (345)
T PF10282_consen 64 VSSYRIDPDTGTLTLLNSVPSGGSSPCHIA-------VDPDGRFLYVANYGGGSVSVFPLDD--DGSLGEVVQTVRHEGS 134 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSCEEEEE-------ECTTSSEEEEEETTTTEEEEEEECT--TSEEEEEEEEEESEEE
T ss_pred EEEEEECCCcceeEEeeeeccCCCCcEEEE-------EecCCCEEEEEEccCCeEEEEEccC--CcccceeeeecccCCC
Confidence 44666777778888886553 222222222 3457877777655566788884432 11111111 1100000
Q ss_pred ccCCCCCCCccccccCCccceE-EEecCCc-EEEE--eCceEEEEeCCCCe
Q 042680 177 FLERPGNPKGRFRLENNLYPFV-YLLPDGN-VYVF--ANNRSVVHDPKANK 223 (530)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~Yp~~-~llp~G~-lfv~--Gg~~~e~yDp~tn~ 223 (530)
. +...|. ..-.||. ...|||+ ||+. |.....+|+...++
T Consensus 135 g---~~~~rq-----~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 135 G---PNPDRQ-----EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp E---SSTTTT-----SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred C---Cccccc-----ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 0 000010 1223554 4457887 4544 56788888887665
No 63
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.66 E-value=0.99 Score=38.66 Aligned_cols=24 Identities=46% Similarity=0.433 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHhcccccCC
Q 042680 6 SKKVQSLILLAAVLLLVNNAAAAP 29 (530)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (530)
||+++.|.||+++|+|.+++++|.
T Consensus 3 SK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhH
Confidence 788877766666666666555554
No 64
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=79.75 E-value=76 Score=32.43 Aligned_cols=20 Identities=10% Similarity=-0.177 Sum_probs=13.0
Q ss_pred ccCCeEEEeccCCCCcEEEE
Q 042680 136 LSDGSFLVYGGRDAFSYEYV 155 (530)
Q Consensus 136 L~dG~v~VvGG~~~~s~E~y 155 (530)
-+||+.+.+.......+.+|
T Consensus 134 ~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 134 DPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred CCCCCEEEEeeCCCCEEEEE
Confidence 45776665555555677778
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=79.25 E-value=40 Score=35.46 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=28.0
Q ss_pred EEEEeCCCCcEEEccccCCcccccceeccCCcEEEccCCeEEEeccCC
Q 042680 101 SIFYDYNKNAVKALKVQSDTWCSSGGLSADGRLVMLSDGSFLVYGGRD 148 (530)
Q Consensus 101 ~~~yDp~t~~w~~l~~~~~~~~~~~~~l~dG~l~~L~dG~v~VvGG~~ 148 (530)
..+||..|.....++.+....+....+ .+ +|++||+....
T Consensus 88 t~vyDt~t~av~~~P~l~~pk~~pisv-------~V-G~~LY~m~~~~ 127 (342)
T PF07893_consen 88 TLVYDTDTRAVATGPRLHSPKRCPISV-------SV-GDKLYAMDRSP 127 (342)
T ss_pred eEEEECCCCeEeccCCCCCCCcceEEE-------Ee-CCeEEEeeccC
Confidence 679999999999888876433322221 23 77899998763
No 66
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=78.08 E-value=66 Score=34.65 Aligned_cols=135 Identities=15% Similarity=0.201 Sum_probs=76.7
Q ss_pred ccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEEEecCCcEEEEeC--c
Q 042680 136 LSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVYLLPDGNVYVFAN--N 212 (530)
Q Consensus 136 L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~llp~G~lfv~Gg--~ 212 (530)
-+||.+...||.++.. .+| -+++ ....++. +|-+.- | .+.-.|||...+.|+ +
T Consensus 312 ~~DGSL~~tGGlD~~~-RvWDlRtg---r~im~L~------------gH~k~I-------~-~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLG-RVWDLRTG---RCIMFLA------------GHIKEI-------L-SVAFSPNGYHLATGSSDN 367 (459)
T ss_pred cCCCceeeccCccchh-heeecccC---cEEEEec------------ccccce-------e-eEeECCCceEEeecCCCC
Confidence 3599999999988642 344 3433 1222221 011111 1 123358999999987 5
Q ss_pred eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcEEE
Q 042680 213 RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDCAR 292 (530)
Q Consensus 213 ~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~ 292 (530)
.+-+||.+.-+- +-.||+. ++- =+-|-+ .. ..|+.|+.++.+. ++-.
T Consensus 368 t~kVWDLR~r~~---ly~ipAH-~nl---VS~Vk~-------~p--~~g~fL~TasyD~-----------------t~ki 414 (459)
T KOG0272|consen 368 TCKVWDLRMRSE---LYTIPAH-SNL---VSQVKY-------SP--QEGYFLVTASYDN-----------------TVKI 414 (459)
T ss_pred cEEEeeeccccc---ceecccc-cch---hhheEe-------cc--cCCeEEEEcccCc-----------------ceee
Confidence 788999987653 3345532 221 011111 00 2688888887651 1223
Q ss_pred EEcCCCCCcceec-CC--CCccccceeeeecCCeEEEEcCCCC
Q 042680 293 MVVTSPNPEWKIE-KM--PAPRTMADGVLLPNGEVLIINGADL 332 (530)
Q Consensus 293 ~dp~~~~~~W~~~-~M--~~~R~~~~~vvLpdG~VlViGG~~~ 332 (530)
+. +..|+.. .| .+.+++...+. +||..++..+.++
T Consensus 415 Ws----~~~~~~~ksLaGHe~kV~s~Dis-~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 415 WS----TRTWSPLKSLAGHEGKVISLDIS-PDSQAIATSSFDR 452 (459)
T ss_pred ec----CCCcccchhhcCCccceEEEEec-cCCceEEEeccCc
Confidence 33 3668875 55 56777776565 7999988888763
No 67
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=77.82 E-value=86 Score=32.01 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=18.0
Q ss_pred ceEE-EecCCcEEEEe---CceEEEEeCCCCe
Q 042680 196 PFVY-LLPDGNVYVFA---NNRSVVHDPKANK 223 (530)
Q Consensus 196 p~~~-llp~G~lfv~G---g~~~e~yDp~tn~ 223 (530)
||.. +.|||+.+++. .+...+||..++.
T Consensus 128 ~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 128 CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 5543 55788655443 3678999997743
No 68
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=75.37 E-value=98 Score=31.40 Aligned_cols=113 Identities=21% Similarity=0.221 Sum_probs=64.4
Q ss_pred EEEecCCcEEEEeCceE--EEEeCCCCeEEEEccCCCCC-CCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcc
Q 042680 198 VYLLPDGNVYVFANNRS--VVHDPKANKIIREFPQLPGG-ARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGL 274 (530)
Q Consensus 198 ~~llp~G~lfv~Gg~~~--e~yDp~tn~w~~~~p~mp~~-~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~ 274 (530)
..+.+||+.++.+++.. .+|+..+.+-...+-|+..- .++ ..+...+| . .++|.++.-+++
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~--~~il~C~l--S--------Pd~k~lat~ssd---- 236 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN--GHILRCLL--S--------PDVKYLATCSSD---- 236 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc--ceEEEEEE--C--------CCCcEEEeecCC----
Confidence 56788999999998754 45565554433334333210 111 01233333 1 256777765543
Q ss_pred ccccccccccccCCcEEEEEcCCCCCcceec-CC-CCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680 275 YLGEEEKRFVNALDDCARMVVTSPNPEWKIE-KM-PAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP 352 (530)
Q Consensus 275 ~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M-~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP 352 (530)
++|.+++.++ - ...| .+ -..|++-+.+--.||+-+|.|+.+ ..+.+||+
T Consensus 237 -------------ktv~iwn~~~--~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd-------------~~~rlW~~ 287 (311)
T KOG0315|consen 237 -------------KTVKIWNTDD--F-FKLELVLTGHQRWVWDCAFSADGEYLVTASSD-------------HTARLWDL 287 (311)
T ss_pred -------------ceEEEEecCC--c-eeeEEEeecCCceEEeeeeccCccEEEecCCC-------------Cceeeccc
Confidence 3455555432 1 2333 22 234666666666799999999865 15678888
Q ss_pred CCC
Q 042680 353 NAP 355 (530)
Q Consensus 353 ~t~ 355 (530)
.++
T Consensus 288 ~~~ 290 (311)
T KOG0315|consen 288 SAG 290 (311)
T ss_pred ccC
Confidence 877
No 69
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=72.49 E-value=3.3 Score=45.22 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=72.1
Q ss_pred CcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceec----CCCCccccceeeeecCC--eEEEEcCCCCC
Q 042680 260 DAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIE----KMPAPRTMADGVLLPNG--EVLIINGADLG 333 (530)
Q Consensus 260 ~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~----~M~~~R~~~~~vvLpdG--~VlViGG~~~g 333 (530)
+..||.-||.+.- ..+.+-..|... .+.|..+ .-|-.|++|-||+= .- |+|+.|-+- +
T Consensus 272 ~~CiYLYGGWdG~------------~~l~DFW~Y~v~--e~~W~~iN~~t~~PG~RsCHRMVid-~S~~KLYLlG~Y~-~ 335 (723)
T KOG2437|consen 272 TECVYLYGGWDGT------------QDLADFWAYSVK--ENQWTCINRDTEGPGARSCHRMVID-ISRRKLYLLGRYL-D 335 (723)
T ss_pred CcEEEEecCcccc------------hhHHHHHhhcCC--cceeEEeecCCCCCcchhhhhhhhh-hhHhHHhhhhhcc-c
Confidence 5699999998722 123445567655 4889975 37889999999873 44 899998653 2
Q ss_pred CCCcccCCCCCcccEEecCCCCCCCceEEecCCCC------CCcccccceecCCCeEEEcCCCC
Q 042680 334 SGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDI------PRMYHSVANLLPDGKVFVGGSND 391 (530)
Q Consensus 334 ~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~------~R~yHS~a~LLpdGrVlv~GG~~ 391 (530)
..- ...-..-.....||-.++ .|+.+.--+. .-..|..++--..|-|||.||-.
T Consensus 336 sS~-r~~~s~RsDfW~FDi~~~---~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 336 SSV-RNSKSLRSDFWRFDIDTN---TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred ccc-ccccccccceEEEecCCc---eeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 110 000001124578999999 9997643322 24568887763334499999963
No 70
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=71.64 E-value=44 Score=33.79 Aligned_cols=141 Identities=18% Similarity=0.173 Sum_probs=80.3
Q ss_pred EEEecCCcEEEEeCc-eEEEEeCCCCeEEEEccCCCC-CCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680 198 VYLLPDGNVYVFANN-RSVVHDPKANKIIREFPQLPG-GARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY 275 (530)
Q Consensus 198 ~~llp~G~lfv~Gg~-~~e~yDp~tn~w~~~~p~mp~-~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~ 275 (530)
.-+.||++.++.+|+ .+.+||..++.= -|-+.- +++.- =++|-+ -++|+-+..||-+ +
T Consensus 46 LeiTpdk~~LAaa~~qhvRlyD~~S~np---~Pv~t~e~h~kN---VtaVgF----------~~dgrWMyTgseD-g--- 105 (311)
T KOG0315|consen 46 LEITPDKKDLAAAGNQHVRLYDLNSNNP---NPVATFEGHTKN---VTAVGF----------QCDGRWMYTGSED-G--- 105 (311)
T ss_pred EEEcCCcchhhhccCCeeEEEEccCCCC---CceeEEeccCCc---eEEEEE----------eecCeEEEecCCC-c---
Confidence 357789998888775 789999999852 222110 11110 133322 1589999998854 1
Q ss_pred cccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680 276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA 354 (530)
Q Consensus 276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t 354 (530)
+|-+.|... ..-+.+ .-+.+ --+.|+-|+-.=||+|-.+ | .+.+||-.+
T Consensus 106 -------------t~kIWdlR~--~~~qR~~~~~sp--Vn~vvlhpnQteLis~dqs-g------------~irvWDl~~ 155 (311)
T KOG0315|consen 106 -------------TVKIWDLRS--LSCQRNYQHNSP--VNTVVLHPNQTELISGDQS-G------------NIRVWDLGE 155 (311)
T ss_pred -------------eEEEEeccC--cccchhccCCCC--cceEEecCCcceEEeecCC-C------------cEEEEEccC
Confidence 345556553 211111 11211 1233444666666666443 2 578999999
Q ss_pred CCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCC
Q 042680 355 PEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDN 392 (530)
Q Consensus 355 ~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~ 392 (530)
+ ..+.. .++..-..-....+.|||+.++++-+..
T Consensus 156 ~---~c~~~-liPe~~~~i~sl~v~~dgsml~a~nnkG 189 (311)
T KOG0315|consen 156 N---SCTHE-LIPEDDTSIQSLTVMPDGSMLAAANNKG 189 (311)
T ss_pred C---ccccc-cCCCCCcceeeEEEcCCCcEEEEecCCc
Confidence 9 77642 3333334444566789999999887643
No 71
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=71.57 E-value=77 Score=32.91 Aligned_cols=31 Identities=3% Similarity=0.241 Sum_probs=15.6
Q ss_pred CcEEEccCCcchheeeeeecCCCCeEEEEeee
Q 042680 35 GSWELISQNAGISAMHTQLLPKTDQIAVFDAS 66 (530)
Q Consensus 35 g~w~~~~~~~~v~a~h~~~l~~~gkv~~~~~~ 66 (530)
.+|+.+...+. .++-......+|+++.++..
T Consensus 134 ~tW~~~~~~~~-gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 134 KTWQAVVSETS-GSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp SSEEEEE-S-----EEEEEE-TTS-EEEEETT
T ss_pred CCeeEcccCCc-ceeEeEEECCCCcEEEEECc
Confidence 58999765433 33433333389998877643
No 72
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=71.51 E-value=96 Score=29.56 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=19.7
Q ss_pred EecCCcEEEEe-CceEEEEeCCCCeEE
Q 042680 200 LLPDGNVYVFA-NNRSVVHDPKANKII 225 (530)
Q Consensus 200 llp~G~lfv~G-g~~~e~yDp~tn~w~ 225 (530)
+..+++||+.. ++....+|.++++..
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred eecccccccccceeeeEecccCCccee
Confidence 55689998886 457899998887643
No 73
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=71.40 E-value=1.5e+02 Score=36.11 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=38.6
Q ss_pred eeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCC----------CCc--ccccceecCCC
Q 042680 315 DGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDI----------PRM--YHSVANLLPDG 382 (530)
Q Consensus 315 ~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~----------~R~--yHS~a~LLpdG 382 (530)
+.++-+||+|||....+ ..+.+||+++. ..+.++.... .+. -+++ ++-+||
T Consensus 808 Gvavd~dG~LYVADs~N-------------~rIrviD~~tg---~v~tiaG~G~~G~~dG~~~~a~l~~P~GI-avd~dG 870 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYN-------------HKIKKLDPATK---RVTTLAGTGKAGFKDGKALKAQLSEPAGL-ALGENG 870 (1057)
T ss_pred eeeEeCCCcEEEEECCC-------------CEEEEEECCCC---eEEEEeccCCcCCCCCcccccccCCceEE-EEeCCC
Confidence 33455899999987543 26889999888 6665543221 111 2233 445899
Q ss_pred eEEEcCCCCC
Q 042680 383 KVFVGGSNDN 392 (530)
Q Consensus 383 rVlv~GG~~~ 392 (530)
++||+-.+.+
T Consensus 871 ~lyVaDt~Nn 880 (1057)
T PLN02919 871 RLFVADTNNS 880 (1057)
T ss_pred CEEEEECCCC
Confidence 9999976543
No 74
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.15 E-value=76 Score=32.99 Aligned_cols=100 Identities=18% Similarity=0.323 Sum_probs=58.9
Q ss_pred Eec-CCcEEEEeC---ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680 200 LLP-DGNVYVFAN---NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY 275 (530)
Q Consensus 200 llp-~G~lfv~Gg---~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~ 275 (530)
.-| ++.+.+|+- ..+.++|+.+++-.+.+.+-+ .|.| .|.++..| +|+.|..== +.+.
T Consensus 12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~--gRHF--yGHg~fs~-----------dG~~LytTE---nd~~ 73 (305)
T PF07433_consen 12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP--GRHF--YGHGVFSP-----------DGRLLYTTE---NDYE 73 (305)
T ss_pred eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC--CCEE--ecCEEEcC-----------CCCEEEEec---cccC
Confidence 445 677777874 578899999998765555422 2443 37777543 565555421 1221
Q ss_pred cccccccccccCCcEEEEEcCCCCCcceec-CCC-CccccceeeeecCC-eEEEEcC
Q 042680 276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMP-APRTMADGVLLPNG-EVLIING 329 (530)
Q Consensus 276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~-~~R~~~~~vvLpdG-~VlViGG 329 (530)
..--.+.+||.. ..++.. ..+ ..---|...++||| ++.|.||
T Consensus 74 ---------~g~G~IgVyd~~---~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 74 ---------TGRGVIGVYDAA---RGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred ---------CCcEEEEEEECc---CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 112245667765 445543 332 23445788899999 6666666
No 75
>PTZ00421 coronin; Provisional
Probab=70.30 E-value=85 Score=34.81 Aligned_cols=110 Identities=14% Similarity=0.063 Sum_probs=55.8
Q ss_pred cC-CcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccc
Q 042680 202 PD-GNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGE 278 (530)
Q Consensus 202 p~-G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~ 278 (530)
|+ +++++.|+ ..+.+||..+++-...+..-. . +... ...- .++.++++|+.+
T Consensus 135 P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~----~-~V~s-la~s-----------pdG~lLatgs~D-------- 189 (493)
T PTZ00421 135 PSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS----D-QITS-LEWN-----------LDGSLLCTTSKD-------- 189 (493)
T ss_pred cCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC----C-ceEE-EEEE-----------CCCCEEEEecCC--------
Confidence 44 46888877 468899999887553332111 1 1111 1111 267888888764
Q ss_pred ccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680 279 EEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP 355 (530)
Q Consensus 279 ~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~ 355 (530)
..+..+|+.......+. ...........+-.+++..++..|.+... -.++.+||..+.
T Consensus 190 ---------g~IrIwD~rsg~~v~tl-~~H~~~~~~~~~w~~~~~~ivt~G~s~s~---------Dr~VklWDlr~~ 247 (493)
T PTZ00421 190 ---------KKLNIIDPRDGTIVSSV-EAHASAKSQRCLWAKRKDLIITLGCSKSQ---------QRQIMLWDTRKM 247 (493)
T ss_pred ---------CEEEEEECCCCcEEEEE-ecCCCCcceEEEEcCCCCeEEEEecCCCC---------CCeEEEEeCCCC
Confidence 23556887642111111 11211111122344666666666643111 125789998754
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=70.06 E-value=91 Score=31.62 Aligned_cols=135 Identities=19% Similarity=0.288 Sum_probs=72.4
Q ss_pred EEEecCCcEEEEeC-ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680 198 VYLLPDGNVYVFAN-NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL 276 (530)
Q Consensus 198 ~~llp~G~lfv~Gg-~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~ 276 (530)
.|+.-|..|+-... ..+.+||-+|++.++.+- + +.|....-+ ..+|+|+.+-=.
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~-----~s~VtSlEv------------s~dG~ilTia~g------- 204 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-F-----NSPVTSLEV------------SQDGRILTIAYG------- 204 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEe-c-----CCCCcceee------------ccCCCEEEEecC-------
Confidence 35555666665433 578999999998775441 1 112112211 137888877311
Q ss_pred ccccccccccCCcEEEEEcCCCCCccee--c-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCC
Q 042680 277 GEEEKRFVNALDDCARMVVTSPNPEWKI--E-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPN 353 (530)
Q Consensus 277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~--~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~ 353 (530)
.++...|+. .... . .||..- .++-+-|+-.+||.||... .+..||-.
T Consensus 205 -----------ssV~Fwdak----sf~~lKs~k~P~nV--~SASL~P~k~~fVaGged~-------------~~~kfDy~ 254 (334)
T KOG0278|consen 205 -----------SSVKFWDAK----SFGLLKSYKMPCNV--ESASLHPKKEFFVAGGEDF-------------KVYKFDYN 254 (334)
T ss_pred -----------ceeEEeccc----cccceeeccCcccc--ccccccCCCceEEecCcce-------------EEEEEecc
Confidence 112333432 1222 1 466432 3334559999999999762 45677777
Q ss_pred CCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680 354 APEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND 391 (530)
Q Consensus 354 t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~ 391 (530)
|+ .=...-.-...---|++ -.-|||.+|..|+.+
T Consensus 255 Tg---eEi~~~nkgh~gpVhcV-rFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 255 TG---EEIGSYNKGHFGPVHCV-RFSPDGELYASGSED 288 (334)
T ss_pred CC---ceeeecccCCCCceEEE-EECCCCceeeccCCC
Confidence 76 11110000111111432 246999999999964
No 77
>PTZ00421 coronin; Provisional
Probab=68.35 E-value=1.6e+02 Score=32.76 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=19.7
Q ss_pred eecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680 318 LLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP 355 (530)
Q Consensus 318 vLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~ 355 (530)
.-|||+++++++.+. ++-+||+.+.
T Consensus 176 ~spdG~lLatgs~Dg-------------~IrIwD~rsg 200 (493)
T PTZ00421 176 WNLDGSLLCTTSKDK-------------KLNIIDPRDG 200 (493)
T ss_pred EECCCCEEEEecCCC-------------EEEEEECCCC
Confidence 358999999988651 5779999876
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=67.94 E-value=56 Score=33.11 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=22.6
Q ss_pred EEEecCCcEEEEeCce--EEEEeCCCCeEE
Q 042680 198 VYLLPDGNVYVFANNR--SVVHDPKANKII 225 (530)
Q Consensus 198 ~~llp~G~lfv~Gg~~--~e~yDp~tn~w~ 225 (530)
+.+-|+-.+||.||+. +..||+.|+.-+
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCcee
Confidence 3577899999999986 567899998755
No 79
>PLN00181 protein SPA1-RELATED; Provisional
Probab=67.59 E-value=2.2e+02 Score=33.37 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=18.5
Q ss_pred cCCcEEEEeC--ceEEEEeCCCCeEEEE
Q 042680 202 PDGNVYVFAN--NRSVVHDPKANKIIRE 227 (530)
Q Consensus 202 p~G~lfv~Gg--~~~e~yDp~tn~w~~~ 227 (530)
.++++++.|+ ....+||..+++....
T Consensus 543 ~~~~~las~~~Dg~v~lWd~~~~~~~~~ 570 (793)
T PLN00181 543 YIKSQVASSNFEGVVQVWDVARSQLVTE 570 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 4577777776 3678999998876533
No 80
>PLN00181 protein SPA1-RELATED; Provisional
Probab=65.16 E-value=91 Score=36.51 Aligned_cols=141 Identities=12% Similarity=0.055 Sum_probs=72.1
Q ss_pred cCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccc
Q 042680 202 PDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEE 279 (530)
Q Consensus 202 p~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~ 279 (530)
.+|.+++.|+. .+.+||..+++....+.. . .. -.++.++ + .+++.+++|+.+
T Consensus 586 ~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~---~~----v~~v~~~--~-------~~g~~latgs~d--------- 639 (793)
T PLN00181 586 ADPTLLASGSDDGSVKLWSINQGVSIGTIKT-K---AN----ICCVQFP--S-------ESGRSLAFGSAD--------- 639 (793)
T ss_pred CCCCEEEEEcCCCEEEEEECCCCcEEEEEec-C---CC----eEEEEEe--C-------CCCCEEEEEeCC---------
Confidence 37889988874 578999987754433311 0 01 1222221 0 257888888754
Q ss_pred cccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCC-CC
Q 042680 280 EKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPE-GQ 358 (530)
Q Consensus 280 ~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~-g~ 358 (530)
..+..||+......... +..-......+...++..++.++.+. ++-+||..+.. +.
T Consensus 640 --------g~I~iwD~~~~~~~~~~--~~~h~~~V~~v~f~~~~~lvs~s~D~-------------~ikiWd~~~~~~~~ 696 (793)
T PLN00181 640 --------HKVYYYDLRNPKLPLCT--MIGHSKTVSYVRFVDSSTLVSSSTDN-------------TLKLWDLSMSISGI 696 (793)
T ss_pred --------CeEEEEECCCCCccceE--ecCCCCCEEEEEEeCCCEEEEEECCC-------------EEEEEeCCCCcccc
Confidence 13567787532111111 11111112234445888888887641 57789886531 11
Q ss_pred ceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680 359 RFAELAPTDIPRMYHSVANLLPDGKVFVGGSND 391 (530)
Q Consensus 359 ~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~ 391 (530)
.|..+....-.........+-++|+++++|+..
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D 729 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSET 729 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 232222111101111223456789999999854
No 81
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=63.57 E-value=1.9e+02 Score=30.02 Aligned_cols=138 Identities=20% Similarity=0.249 Sum_probs=74.6
Q ss_pred ecCCcEEEEeC-ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccc
Q 042680 201 LPDGNVYVFAN-NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEE 279 (530)
Q Consensus 201 lp~G~lfv~Gg-~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~ 279 (530)
+.|++|+-..| ....+||.++++-++.+ .+ ++|-..-|.+.| .+++-||.||.+..
T Consensus 154 ~dD~~ilT~SGD~TCalWDie~g~~~~~f---~G------H~gDV~slsl~p-------~~~ntFvSg~cD~~------- 210 (343)
T KOG0286|consen 154 LDDNHILTGSGDMTCALWDIETGQQTQVF---HG------HTGDVMSLSLSP-------SDGNTFVSGGCDKS------- 210 (343)
T ss_pred cCCCceEecCCCceEEEEEcccceEEEEe---cC------CcccEEEEecCC-------CCCCeEEecccccc-------
Confidence 34888887655 57899999999765433 22 123333444444 26899999998732
Q ss_pred cccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCC
Q 042680 280 EKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQ 358 (530)
Q Consensus 280 ~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~ 358 (530)
....|..++ .-... .-++.-. ...--.|+|.-|+.|--+ + +.-+||-.++ +
T Consensus 211 ----------aklWD~R~~--~c~qtF~ghesDI-Nsv~ffP~G~afatGSDD-~------------tcRlyDlRaD--~ 262 (343)
T KOG0286|consen 211 ----------AKLWDVRSG--QCVQTFEGHESDI-NSVRFFPSGDAFATGSDD-A------------TCRLYDLRAD--Q 262 (343)
T ss_pred ----------eeeeeccCc--ceeEeeccccccc-ceEEEccCCCeeeecCCC-c------------eeEEEeecCC--c
Confidence 234555532 11110 1111111 111235888888876533 1 5778998887 1
Q ss_pred ceEEecCCCCCCcccccceecCCCeEEEcCCC
Q 042680 359 RFAELAPTDIPRMYHSVANLLPDGKVFVGGSN 390 (530)
Q Consensus 359 ~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~ 390 (530)
+-.....-.+--.--|++.- ..||+|.+|.+
T Consensus 263 ~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~ 293 (343)
T KOG0286|consen 263 ELAVYSHDSIICGITSVAFS-KSGRLLFAGYD 293 (343)
T ss_pred EEeeeccCcccCCceeEEEc-ccccEEEeeec
Confidence 22222222222222333333 48999999964
No 82
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=61.27 E-value=1.4e+02 Score=27.76 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=68.1
Q ss_pred EecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680 200 LLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG 277 (530)
Q Consensus 200 llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~ 277 (530)
..+++++++.++ ....+||..+++....+.... . +... .... .+++++++|..+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~-~i~~-~~~~-----------~~~~~l~~~~~~------- 156 (289)
T cd00200 101 FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT----D-WVNS-VAFS-----------PDGTFVASSSQD------- 156 (289)
T ss_pred EcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC----C-cEEE-EEEc-----------CcCCEEEEEcCC-------
Confidence 345678888876 467899998776554443111 1 1111 1111 135666665522
Q ss_pred cccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCC
Q 042680 278 EEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEG 357 (530)
Q Consensus 278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g 357 (530)
..+..||+......... .... ....+....|+|+.+++++.. | .+.+||..+.
T Consensus 157 ----------~~i~i~d~~~~~~~~~~-~~~~-~~i~~~~~~~~~~~l~~~~~~-~------------~i~i~d~~~~-- 209 (289)
T cd00200 157 ----------GTIKLWDLRTGKCVATL-TGHT-GEVNSVAFSPDGEKLLSSSSD-G------------TIKLWDLSTG-- 209 (289)
T ss_pred ----------CcEEEEEccccccceeE-ecCc-cccceEEECCCcCEEEEecCC-C------------cEEEEECCCC--
Confidence 12456776421111111 1111 123344556888777777753 1 4678998764
Q ss_pred CceEEecCCCCCCcccccceecCCCeEEEcCC
Q 042680 358 QRFAELAPTDIPRMYHSVANLLPDGKVFVGGS 389 (530)
Q Consensus 358 ~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG 389 (530)
+... ........-......+|++++++++
T Consensus 210 -~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 210 -KCLG--TLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred -ceec--chhhcCCceEEEEEcCCCcEEEEEc
Confidence 3221 1101111112234567888888887
No 83
>PTZ00420 coronin; Provisional
Probab=61.10 E-value=96 Score=35.13 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=16.9
Q ss_pred ecCCc-EEEEeC--ceEEEEeCCCCeEE
Q 042680 201 LPDGN-VYVFAN--NRSVVHDPKANKII 225 (530)
Q Consensus 201 lp~G~-lfv~Gg--~~~e~yDp~tn~w~ 225 (530)
-|++. +++.|+ ....+||..+++-.
T Consensus 134 ~P~g~~iLaSgS~DgtIrIWDl~tg~~~ 161 (568)
T PTZ00420 134 NPMNYYIMCSSGFDSFVNIWDIENEKRA 161 (568)
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence 35665 555665 46889999988643
No 84
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=60.83 E-value=2.6e+02 Score=30.75 Aligned_cols=316 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred eeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEccccC------Cccc
Q 042680 49 MHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALKVQS------DTWC 122 (530)
Q Consensus 49 ~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~~~~------~~~~ 122 (530)
||..++-+||.||.+|.-..|.-.-+..-- -|..+ .....+|.....|+|....- ..+-
T Consensus 114 ~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~--~~~~~-------------~~~~~~~~~~~~~tP~~v~~~s~~~s~~~v 178 (476)
T COG5184 114 NHSLGLDHDGNLYSWGDNDDGALGRDIHKD--ICDQN-------------NDIIDFDDYELESTPFKVPGGSSAKSHLRV 178 (476)
T ss_pred ceEEeecCCCCEEEeccCcccccccccccc--ccccc-------------ccccccchhhcccCCceeeccccccCChhe
Q ss_pred ccceeccCCcEEEccCCeEEEeccCCC--CcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCccceEE
Q 042680 123 SSGGLSADGRLVMLSDGSFLVYGGRDA--FSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNLYPFVY 199 (530)
Q Consensus 123 ~~~~~l~dG~l~~L~dG~v~VvGG~~~--~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~Yp~~~ 199 (530)
.--+.-.+-+++.-.||+||.-|.... ..-..| +.+. ......|+.. +..+..+-..---|.+
T Consensus 179 v~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k---~~~~~~p~~v-----------~~~~i~qla~G~dh~i 244 (476)
T COG5184 179 VKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQK---TSIQFTPLKV-----------PKKAIVQLAAGADHLI 244 (476)
T ss_pred EEeecCCceEEEEccCCcEEEecCcccccccccccccccc---ceeeeeeeec-----------CchheeeeccCCceEE
Q ss_pred Eec-CCcEEEEeCceEEEEeCCCCeEEEEccCCCCC--CCc--cCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcc
Q 042680 200 LLP-DGNVYVFANNRSVVHDPKANKIIREFPQLPGG--ARS--YPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGL 274 (530)
Q Consensus 200 llp-~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~--~r~--yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~ 274 (530)
++- +|++|.+|++.---|-..+-+=.+..+..+.. .|+ |-.+|.--++.|.. +|+||..|.---+.
T Consensus 245 ~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~--------~G~i~a~G~n~fgq- 315 (476)
T COG5184 245 ALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDE--------DGEIYAWGVNIFGQ- 315 (476)
T ss_pred EEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcC--------CCeEEEeccchhcc-
Q ss_pred ccccccccccccCCcEEEEEcCCCCCcceec--CCCCc--------cccceeeeecCCeEEEEcCCCCCCCCcccCCCCC
Q 042680 275 YLGEEEKRFVNALDDCARMVVTSPNPEWKIE--KMPAP--------RTMADGVLLPNGEVLIINGADLGSGGWHCADKPS 344 (530)
Q Consensus 275 ~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~--~M~~~--------R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~ 344 (530)
+..+ =|++.+.-.|... .|... =..|..++.-||.+|..|=..
T Consensus 316 ------------lg~~--~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~------------- 368 (476)
T COG5184 316 ------------LGAG--SDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGD------------- 368 (476)
T ss_pred ------------cccC--cccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCc-------------
Q ss_pred cccEEecCC--CCCCCceEEecCCC-----CCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCCC
Q 042680 345 LKPMLYRPN--APEGQRFAELAPTD-----IPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAP 417 (530)
Q Consensus 345 ~~~eiYDP~--t~~g~~Wt~la~~~-----~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~~ 417 (530)
.-++-+++ +-.=..|+.++... ..+..|+.+.. .+|.||.-|-+.++......+. |.+.+|.+.+
T Consensus 369 -~~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t-~~gsvy~wG~ge~gnlG~g~~~------~~~~~pt~i~ 440 (476)
T COG5184 369 -RGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIART-DDGSVYSWGWGEHGNLGNGPKE------ADVLVPTLIR 440 (476)
T ss_pred -cccccCcccceeecCCccccccccceEEEEecCccceeec-cCCceEEecCchhhhccCCchh------hhcccccccc
Q ss_pred cccCCCCceeccCCCCccccCCEEEE
Q 042680 418 EYAALRPAILEDQSDKAATYGKWVYL 443 (530)
Q Consensus 418 ~~~~~RP~i~~~~~p~~~~~g~~~~v 443 (530)
.....=+.|..+ .||..|.|
T Consensus 441 ~~~~~~~~~i~~------g~~~~~~v 460 (476)
T COG5184 441 QPLLSGHNIILA------GYGNQFSV 460 (476)
T ss_pred ccccCCCceEEe------ccCcceEE
No 85
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=58.19 E-value=2.4e+02 Score=29.36 Aligned_cols=58 Identities=12% Similarity=0.230 Sum_probs=31.2
Q ss_pred cEEEEEcCCCCCcceec-----CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEe--cCCCCCCCceE
Q 042680 289 DCARMVVTSPNPEWKIE-----KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLY--RPNAPEGQRFA 361 (530)
Q Consensus 289 s~~~~dp~~~~~~W~~~-----~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiY--DP~t~~g~~Wt 361 (530)
++..|++...+.+-+.. .-..|| ++.+-|||+.+++..... ..+.+| |+++. +++
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~Pr---~~~~s~~g~~l~Va~~~s------------~~v~vf~~d~~tG---~l~ 329 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKFPR---HFAFSPDGRYLYVANQDS------------NTVSVFDIDPDTG---KLT 329 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSSEE---EEEE-TTSSEEEEEETTT------------TEEEEEEEETTTT---EEE
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCCcc---EEEEeCCCCEEEEEecCC------------CeEEEEEEeCCCC---cEE
Confidence 45566664323333321 233466 344569999888776541 146666 56666 776
Q ss_pred Eec
Q 042680 362 ELA 364 (530)
Q Consensus 362 ~la 364 (530)
.+.
T Consensus 330 ~~~ 332 (345)
T PF10282_consen 330 PVG 332 (345)
T ss_dssp EEE
T ss_pred Eec
Confidence 544
No 86
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=57.21 E-value=1.1e+02 Score=32.47 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=25.6
Q ss_pred cceEEEecCCc-EEEEeC-----------ceEEEEeCCCCeEEEEcc
Q 042680 195 YPFVYLLPDGN-VYVFAN-----------NRSVVHDPKANKIIREFP 229 (530)
Q Consensus 195 Yp~~~llp~G~-lfv~Gg-----------~~~e~yDp~tn~w~~~~p 229 (530)
.|+..+.+||+ ||+... ...++||.++.+.+++++
T Consensus 48 ~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 48 LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 36666778876 555544 358999999999886665
No 87
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=55.36 E-value=2e+02 Score=27.78 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEecCCc-EEEEeC--ceEEEEeCCCCeEEEEc
Q 042680 199 YLLPDGN-VYVFAN--NRSVVHDPKANKIIREF 228 (530)
Q Consensus 199 ~llp~G~-lfv~Gg--~~~e~yDp~tn~w~~~~ 228 (530)
...++|+ +|+.++ ....+||..+.+....+
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~ 111 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEI 111 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence 4557887 555543 46788999987655333
No 88
>PRK13684 Ycf48-like protein; Provisional
Probab=55.18 E-value=2.4e+02 Score=29.44 Aligned_cols=77 Identities=17% Similarity=0.336 Sum_probs=43.7
Q ss_pred CCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCccccc
Q 042680 296 TSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSV 375 (530)
Q Consensus 296 ~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~ 375 (530)
.|...+|+....+..-...+....+||.++++|.. |. +|--..+.|++|+.+.. ...+.-++.
T Consensus 158 ~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~--G~--------------i~~s~~~gg~tW~~~~~-~~~~~l~~i 220 (334)
T PRK13684 158 TDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSR--GN--------------FYSTWEPGQTAWTPHQR-NSSRRLQSM 220 (334)
T ss_pred CCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCC--ce--------------EEEEcCCCCCeEEEeeC-CCcccceee
Confidence 44467899763232334556667788877776643 21 22111122348998744 334444444
Q ss_pred ceecCCCeEEEcCCC
Q 042680 376 ANLLPDGKVFVGGSN 390 (530)
Q Consensus 376 a~LLpdGrVlv~GG~ 390 (530)
+ ..++|+++++|..
T Consensus 221 ~-~~~~g~~~~vg~~ 234 (334)
T PRK13684 221 G-FQPDGNLWMLARG 234 (334)
T ss_pred e-EcCCCCEEEEecC
Confidence 3 4589999888764
No 89
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=54.89 E-value=13 Score=34.31 Aligned_cols=36 Identities=36% Similarity=0.378 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHhcccccCCCCCCCCcEEEccC
Q 042680 7 KKVQSLILLAAVLLLVNNAAAAPAGGFLGSWELISQ 42 (530)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~ 42 (530)
|++..+++++++|+++..++++.....+|.||.-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~~~kpGlWe~t~~ 37 (162)
T PF12276_consen 2 KRRLLLALALALLALAAAAAAAAPDIKPGLWEVTTT 37 (162)
T ss_pred chHHHHHHHHHHHHhhcccccccCCCCCcccEEEEE
Confidence 344444444444444445555555556799998643
No 90
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=54.06 E-value=1.1e+02 Score=32.26 Aligned_cols=57 Identities=9% Similarity=0.193 Sum_probs=40.6
Q ss_pred eecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEcCCCCCC
Q 042680 318 LLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDND 393 (530)
Q Consensus 318 vLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~ 393 (530)
.|-+.||+.+.... ...+||+++. .-..++.+..+..+- +++- .++++|+.-..+..
T Consensus 73 al~gskIv~~d~~~--------------~t~vyDt~t~---av~~~P~l~~pk~~p-isv~-VG~~LY~m~~~~~~ 129 (342)
T PF07893_consen 73 ALHGSKIVAVDQSG--------------RTLVYDTDTR---AVATGPRLHSPKRCP-ISVS-VGDKLYAMDRSPFP 129 (342)
T ss_pred EecCCeEEEEcCCC--------------CeEEEECCCC---eEeccCCCCCCCcce-EEEE-eCCeEEEeeccCcc
Confidence 33588999886542 3679999999 888777777666554 3332 28889999887654
No 91
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=53.82 E-value=62 Score=29.37 Aligned_cols=92 Identities=20% Similarity=0.142 Sum_probs=45.8
Q ss_pred CCCceeccC---CC---CccccCCEEEEEEEcCCCCccceEEEEEEcCCccccCCCCCcc--eEEeeeeeee-cccCCCc
Q 042680 422 LRPAILEDQ---SD---KAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQR--MLFLSVIELK-NNVAPGV 492 (530)
Q Consensus 422 ~RP~i~~~~---~p---~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR--~v~L~~~~~~-~~~~~g~ 492 (530)
..|+|+... .| ..+..|+.|.+++........+..+|.+ -.-|-.|+-...-+ ..+..+...- ...+...
T Consensus 13 ~~P~I~~~~~~~~p~~~~~~~~G~~ihfe~~i~d~~~i~si~VeI-H~nfd~H~h~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (132)
T PF15418_consen 13 EKPVITLNEIGAFPENCKVATRGDDIHFEADISDNSAIKSIKVEI-HNNFDHHTHSTEAGECEKPWVFEQDYDIYGGKKN 91 (132)
T ss_pred CCCEEEeeecccCCCCCeEEecCCcEEEEEEEEcccceeEEEEEE-ecCcCcccccccccccccCcEEEEEEcccCCccc
Confidence 577776651 13 3467899988887755422223344444 22334443332111 1122221100 0011112
Q ss_pred e--EEEEEcCCCCCcCCCcceEEEEEc
Q 042680 493 D--EVVVAAPPTSALAPPGYYLLSVVN 517 (530)
Q Consensus 493 ~--~~~v~~P~~~~v~ppG~ymlfv~~ 517 (530)
+ ...+++|.+ ++||-|-+++..
T Consensus 92 ~~~h~~i~IPa~---a~~G~YH~~i~V 115 (132)
T PF15418_consen 92 YDFHEHIDIPAD---APAGDYHFMITV 115 (132)
T ss_pred EeEEEeeeCCCC---CCCcceEEEEEE
Confidence 3 346789987 899999777663
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=52.39 E-value=1.9e+02 Score=31.43 Aligned_cols=123 Identities=15% Similarity=0.228 Sum_probs=68.8
Q ss_pred cceEEEecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCC
Q 042680 195 YPFVYLLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVRE 272 (530)
Q Consensus 195 Yp~~~llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~ 272 (530)
|-.+..-|||.||..|-. ..-+||.+...-. ..+|+ ...|.. ++-+ .-+|--|+++--+
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~---a~Fpg--ht~~vk--~i~F----------sENGY~Lat~add-- 410 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV---AKFPG--HTGPVK--AISF----------SENGYWLATAADD-- 410 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCcccc---ccCCC--CCCcee--EEEe----------ccCceEEEEEecC--
Confidence 444556689999999874 4578999887633 33342 122211 1111 1256666664321
Q ss_pred ccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecC
Q 042680 273 GLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRP 352 (530)
Q Consensus 273 ~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP 352 (530)
.++-++|++. ...+....++...--.+...=..|+.++++|.+ .++.+|+-
T Consensus 411 ---------------~~V~lwDLRK-l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~-------------l~Vy~~~k 461 (506)
T KOG0289|consen 411 ---------------GSVKLWDLRK-LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD-------------LQVYICKK 461 (506)
T ss_pred ---------------CeEEEEEehh-hcccceeeccccccceeEEEcCCCCeEEeecce-------------eEEEEEec
Confidence 1266778763 122222233332211111222568999999754 36889999
Q ss_pred CCCCCCceEEecCCCC
Q 042680 353 NAPEGQRFAELAPTDI 368 (530)
Q Consensus 353 ~t~~g~~Wt~la~~~~ 368 (530)
.+. +|+.+...+.
T Consensus 462 ~~k---~W~~~~~~~~ 474 (506)
T KOG0289|consen 462 KTK---SWTEIKELAD 474 (506)
T ss_pred ccc---cceeeehhhh
Confidence 999 9998766543
No 93
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=52.30 E-value=19 Score=38.25 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=35.6
Q ss_pred cCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCccc--ccceecCCCeEEEcCCCCC
Q 042680 320 PNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYH--SVANLLPDGKVFVGGSNDN 392 (530)
Q Consensus 320 pdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yH--S~a~LLpdGrVlv~GG~~~ 392 (530)
|||+.++.|+.+. ++-+||+.|. + +--...+.+| .+...-|||+.++.|+-..
T Consensus 125 p~g~~l~tGsGD~-------------TvR~WD~~Te---T----p~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 125 PTGSRLVTGSGDT-------------TVRLWDLDTE---T----PLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred CCCceEEecCCCc-------------eEEeeccCCC---C----cceeecCCccEEEEEEECCCcchhhccccCC
Confidence 8999999987542 7889999988 2 1112233333 2333469999999998543
No 94
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=51.72 E-value=56 Score=31.93 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCCcceecCCCCccccceeeee-cCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCC
Q 042680 289 DCARMVVTSPNPEWKIEKMPAPRTMADGVLL-PNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTD 367 (530)
Q Consensus 289 s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvL-pdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~ 367 (530)
.+.++++.. .+-+....+. ..++++. ++|++||..... ..++|+.+. +++.+....
T Consensus 23 ~i~~~~~~~--~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~~---------------~~~~d~~~g---~~~~~~~~~ 79 (246)
T PF08450_consen 23 RIYRVDPDT--GEVEVIDLPG---PNGMAFDRPDGRLYVADSGG---------------IAVVDPDTG---KVTVLADLP 79 (246)
T ss_dssp EEEEEETTT--TEEEEEESSS---EEEEEEECTTSEEEEEETTC---------------EEEEETTTT---EEEEEEEEE
T ss_pred EEEEEECCC--CeEEEEecCC---CceEEEEccCCEEEEEEcCc---------------eEEEecCCC---cEEEEeecc
Confidence 466777763 3222223333 3344555 799999987632 356799999 888776652
Q ss_pred C---CCcccccceecCCCeEEEcCCCC
Q 042680 368 I---PRMYHSVANLLPDGKVFVGGSND 391 (530)
Q Consensus 368 ~---~R~yHS~a~LLpdGrVlv~GG~~ 391 (530)
. +....--.++.+||++|++-...
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~ 106 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGG 106 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECC
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCC
Confidence 1 22222234567899999986643
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=50.78 E-value=2.4e+02 Score=27.26 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=20.1
Q ss_pred EEecCCcEEEEeC---ceEEEEeCCCCeEEEEc
Q 042680 199 YLLPDGNVYVFAN---NRSVVHDPKANKIIREF 228 (530)
Q Consensus 199 ~llp~G~lfv~Gg---~~~e~yDp~tn~w~~~~ 228 (530)
...+||+.+++++ ....+||..+.+..+.+
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~ 195 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKI 195 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCcceeeeee
Confidence 3457888665543 46789999988765333
No 96
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=47.96 E-value=2.9e+02 Score=28.90 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=73.3
Q ss_pred EecCCcEEEEeC-ceEEEEeCCCCe--EEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccc
Q 042680 200 LLPDGNVYVFAN-NRSVVHDPKANK--IIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYL 276 (530)
Q Consensus 200 llp~G~lfv~Gg-~~~e~yDp~tn~--w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~ 276 (530)
..-||+||+... .....+|+.+++ |...+. . ..... .+. ++. .+|+||+- ..+ +
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~--~--~~~~~-~~~-~~~-----------~~G~i~~g-~~~-g---- 121 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLL--G--AVAQL-SGP-ILG-----------SDGKIYVG-SWD-G---- 121 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCc--C--cceec-cCc-eEE-----------eCCeEEEe-ccc-c----
Confidence 445899999622 256778999987 652221 1 00110 111 111 25786653 222 1
Q ss_pred ccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680 277 GEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP 355 (530)
Q Consensus 277 ~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~ 355 (530)
...++|..+....|+.. ... .+.-...++ .||.||+..... ...+.|+++.
T Consensus 122 ------------~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~-~~~~v~~~s~~g--------------~~~al~~~tG 173 (370)
T COG1520 122 ------------KLYALDASTGTLVWSRNVGGS-PYYASPPVV-GDGTVYVGTDDG--------------HLYALNADTG 173 (370)
T ss_pred ------------eEEEEECCCCcEEEEEecCCC-eEEecCcEE-cCcEEEEecCCC--------------eEEEEEccCC
Confidence 35678875556789886 442 554555454 699999875211 2445555543
Q ss_pred CCCceEEecCC-CCCCcccccceecCCCeEEEcCC
Q 042680 356 EGQRFAELAPT-DIPRMYHSVANLLPDGKVFVGGS 389 (530)
Q Consensus 356 ~g~~Wt~la~~-~~~R~yHS~a~LLpdGrVlv~GG 389 (530)
-.+|+.-.+. .-.+.+-+.+ .-+|.||+..-
T Consensus 174 -~~~W~~~~~~~~~~~~~~~~~--~~~~~vy~~~~ 205 (370)
T COG1520 174 -TLKWTYETPAPLSLSIYGSPA--IASGTVYVGSD 205 (370)
T ss_pred -cEEEEEecCCccccccccCce--eecceEEEecC
Confidence 1268743332 2334443333 34888888855
No 97
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=47.61 E-value=3.4e+02 Score=29.50 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=79.1
Q ss_pred EEecCCcEEEEeCc--eEEEEeCCCC-eEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680 199 YLLPDGNVYVFANN--RSVVHDPKAN-KIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY 275 (530)
Q Consensus 199 ~llp~G~lfv~Gg~--~~e~yDp~tn-~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~ 275 (530)
.-.+||++.+.|.. ...+||...+ +-.+.+.. ..++- + +...- ..++.+++|+.+
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g----H~~~v-~-~~~f~-----------p~g~~i~Sgs~D----- 267 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG----HSTYV-T-SVAFS-----------PDGNLLVSGSDD----- 267 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCeEEEEecC----CCCce-E-EEEec-----------CCCCEEEEecCC-----
Confidence 34579997777764 6789999444 44444432 22332 1 12221 256888998865
Q ss_pred cccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680 276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA 354 (530)
Q Consensus 276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t 354 (530)
.+|-..|.+. .+-... .-.....-+.+. =+||.+++.+..+ + .+.+||..+
T Consensus 268 ------------~tvriWd~~~--~~~~~~l~~hs~~is~~~f-~~d~~~l~s~s~d-~------------~i~vwd~~~ 319 (456)
T KOG0266|consen 268 ------------GTVRIWDVRT--GECVRKLKGHSDGISGLAF-SPDGNLLVSASYD-G------------TIRVWDLET 319 (456)
T ss_pred ------------CcEEEEeccC--CeEEEeeeccCCceEEEEE-CCCCCEEEEcCCC-c------------cEEEEECCC
Confidence 2466667653 221111 222233232323 3799999998654 1 578999999
Q ss_pred CCCCceE---EecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680 355 PEGQRFA---ELAPTDIPRMYHSVANLLPDGKVFVGGSND 391 (530)
Q Consensus 355 ~~g~~Wt---~la~~~~~R~yHS~a~LLpdGrVlv~GG~~ 391 (530)
. +.. .+.....+. -.+.+..=|+|+.++.+..+
T Consensus 320 ~---~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 320 G---SKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred C---ceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCC
Confidence 8 643 333333332 22334445899999998865
No 98
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=45.86 E-value=1.1e+02 Score=31.61 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=55.7
Q ss_pred EEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCC
Q 042680 290 CARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIP 369 (530)
Q Consensus 290 ~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~ 369 (530)
..++||.. .+=+..++...-.-|..++=|||..+|+-+.. .....||++-.-++|..-..+...
T Consensus 85 iGhLdP~t--Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~--------------aI~R~dpkt~evt~f~lp~~~a~~ 148 (353)
T COG4257 85 IGHLDPAT--GEVETYPLGSGASPHGIVVGPDGSAWITDTGL--------------AIGRLDPKTLEVTRFPLPLEHADA 148 (353)
T ss_pred ceecCCCC--CceEEEecCCCCCCceEEECCCCCeeEecCcc--------------eeEEecCcccceEEeecccccCCC
Confidence 45677763 33333366666666777888999999987643 356899988844566543333333
Q ss_pred CcccccceecCCCeEEEcCCC
Q 042680 370 RMYHSVANLLPDGKVFVGGSN 390 (530)
Q Consensus 370 R~yHS~a~LLpdGrVlv~GG~ 390 (530)
-+ -++++-++|+++..|.+
T Consensus 149 nl--et~vfD~~G~lWFt~q~ 167 (353)
T COG4257 149 NL--ETAVFDPWGNLWFTGQI 167 (353)
T ss_pred cc--cceeeCCCccEEEeecc
Confidence 33 37889999999999974
No 99
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=45.44 E-value=2.9e+02 Score=28.68 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=57.7
Q ss_pred CCcEEEEecCccCCccccccccccccccCCcEEEEEcCCCCC-cceec-CCCCccccceeeeecCC--eEEEEcCCCCCC
Q 042680 259 VDAEVLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNP-EWKIE-KMPAPRTMADGVLLPNG--EVLIINGADLGS 334 (530)
Q Consensus 259 ~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~-~W~~~-~M~~~R~~~~~vvLpdG--~VlViGG~~~g~ 334 (530)
.+..||++||..-.... -.....|+..+-+.. -+... -++..-...+|++.+.| +.+|+||++...
T Consensus 163 r~D~VYilGGHsl~sd~----------Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 163 RNDCVYILGGHSLESDS----------RPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred cCceEEEEccEEccCCC----------CCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccc
Confidence 37899999997522111 112233433332211 12222 45555566666665544 788999987433
Q ss_pred CCc------ccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccceecCCCeEEEc
Q 042680 335 GGW------HCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVANLLPDGKVFVG 387 (530)
Q Consensus 335 ~g~------~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~ 387 (530)
+.- ..++ ..+++=.-+++ .|+ ......|...+...= .|++|++
T Consensus 233 QKRm~C~~V~Ldd---~~I~ie~~E~P---~Wt--~dI~hSrtWFGgs~G--~G~~Li~ 281 (337)
T PF03089_consen 233 QKRMECNTVSLDD---DGIHIEEREPP---EWT--GDIKHSRTWFGGSMG--KGSALIG 281 (337)
T ss_pred eeeeeeeEEEEeC---CceEeccCCCC---CCC--CCcCcCccccccccC--CceEEEE
Confidence 210 0011 12333344566 887 456777777765543 7777765
No 100
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=44.91 E-value=2.6e+02 Score=25.91 Aligned_cols=137 Identities=16% Similarity=0.180 Sum_probs=66.9
Q ss_pred EecCCcEEEEeC--ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680 200 LLPDGNVYVFAN--NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG 277 (530)
Q Consensus 200 llp~G~lfv~Gg--~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~ 277 (530)
..+++++++.+. ....+||..+++-...+.. . ..+... ..+. .+++.+++++.+ +
T Consensus 143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~----~~~i~~-~~~~-----------~~~~~l~~~~~~-~----- 199 (289)
T cd00200 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG-H----TGEVNS-VAFS-----------PDGEKLLSSSSD-G----- 199 (289)
T ss_pred EcCcCCEEEEEcCCCcEEEEEccccccceeEec-C----ccccce-EEEC-----------CCcCEEEEecCC-C-----
Confidence 345677777774 4678999987654433321 1 111111 1221 145455555543 1
Q ss_pred cccccccccCCcEEEEEcCCCCCcceecCC-CCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCC
Q 042680 278 EEEKRFVNALDDCARMVVTSPNPEWKIEKM-PAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPE 356 (530)
Q Consensus 278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M-~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~ 356 (530)
.+..||... .+... .+ ............+++++++.++.+ | ...+||..+.
T Consensus 200 -----------~i~i~d~~~--~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~-~------------~i~i~~~~~~- 251 (289)
T cd00200 200 -----------TIKLWDLST--GKCLG-TLRGHENGVNSVAFSPDGYLLASGSED-G------------TIRVWDLRTG- 251 (289)
T ss_pred -----------cEEEEECCC--Cceec-chhhcCCceEEEEEcCCCcEEEEEcCC-C------------cEEEEEcCCc-
Confidence 245677653 11111 12 112123344556778888877633 1 4678888754
Q ss_pred CCceEEecCCCCCCcccccceecCCCeEEEcCCCC
Q 042680 357 GQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSND 391 (530)
Q Consensus 357 g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~ 391 (530)
+.-..+. .....-.....-++++.+++++..
T Consensus 252 -~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 252 -ECVQTLS---GHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred -eeEEEcc---ccCCcEEEEEECCCCCEEEEecCC
Confidence 1112222 111111123355788888888753
No 101
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=43.84 E-value=1.8e+02 Score=23.88 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCceeccCCCCccccCCEEEEEEEcCCCCccceEEEEEEcCCccccCCCCCcceEEeeeeeeecccCCCceEEEEEcCCC
Q 042680 423 RPAILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPT 502 (530)
Q Consensus 423 RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~ 502 (530)
-|.|.+.. |..-..|++++|.-+--+ ....+|.+ . -...++... + ...+++++|.
T Consensus 2 ~P~I~~i~-P~~g~~G~~VtI~G~gFg---~~~~~V~~-g-------------~~~a~v~s~-----s-dt~I~~~vP~- 56 (81)
T cd02849 2 TPLIGHVG-PMMGKAGNTVTISGEGFG---SAPGTVYF-G-------------TTAATVISW-----S-DTRIVVTVPN- 56 (81)
T ss_pred CCEEeeEc-CCCCCCCCEEEEEEECCC---CCCcEEEE-C-------------CEEeEEEEE-----C-CCEEEEEeCC-
Confidence 48888886 888788999988755322 01122211 1 123344332 1 3588889996
Q ss_pred CCcCCCcceEEEEEc-CCcCcccEE
Q 042680 503 SALAPPGYYLLSVVN-QGIPSHSIW 526 (530)
Q Consensus 503 ~~v~ppG~ymlfv~~-~gvPS~~~~ 526 (530)
.++|.|-++|.. +|.=|.+.-
T Consensus 57 ---~~aG~~~V~V~~~~G~~Sn~~~ 78 (81)
T cd02849 57 ---VPAGNYDVTVKTADGATSNGYN 78 (81)
T ss_pred ---CCCceEEEEEEeCCCcccCcEe
Confidence 379999999997 687776543
No 102
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=43.79 E-value=1.5e+02 Score=28.10 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=46.2
Q ss_pred ceeccCCCCccccCCEEEEEEEcCCCCccceEEEEEEcCCccccCCCCCcceEEeeeeeeecccCCCceEEEEEcCCCCC
Q 042680 425 AILEDQSDKAATYGKWVYLRVKSSEPLTINYVQVSIVAPPFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSA 504 (530)
Q Consensus 425 ~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~~~ 504 (530)
+|....-|..+..|+.|++++-..+ .......|.+...+........ ....+. +.+| .+++++|
T Consensus 137 EIvPl~~P~~l~~g~~~~~~vl~~G-kPl~~a~V~~~~~~~~~~~~~~-----~~~~~T----D~~G--~~~~~~~---- 200 (215)
T PF10670_consen 137 EIVPLTNPYKLKAGDPLPFQVLFDG-KPLAGAEVEAFSPGGWYDVEHE-----AKTLKT----DANG--RATFTLP---- 200 (215)
T ss_pred EEEECcCcccccCCCEEEEEEEECC-eEcccEEEEEEECCCccccccc-----eEEEEE----CCCC--EEEEecC----
Confidence 3444323777889999888877544 2334578888888766544333 222221 1244 6667655
Q ss_pred cCCCcceEEEEEc
Q 042680 505 LAPPGYYLLSVVN 517 (530)
Q Consensus 505 v~ppG~ymlfv~~ 517 (530)
-||.|||-+.+
T Consensus 201 --~~G~wli~a~~ 211 (215)
T PF10670_consen 201 --RPGLWLIRASH 211 (215)
T ss_pred --CCEEEEEEEEE
Confidence 38999998875
No 103
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=40.69 E-value=15 Score=40.33 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=53.3
Q ss_pred CCccccceeeeecCC--eEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecC---CCCCCcccccceecCCC
Q 042680 308 PAPRTMADGVLLPNG--EVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAP---TDIPRMYHSVANLLPDG 382 (530)
Q Consensus 308 ~~~R~~~~~vvLpdG--~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~---~~~~R~yHS~a~LLpdG 382 (530)
|..|..|.||.. ++ .||+-||.+ |+.. +..-.+|.-..+ +|+...- .+=.|..|-.++=...-
T Consensus 258 p~~RgGHQMV~~-~~~~CiYLYGGWd-G~~~-------l~DFW~Y~v~e~---~W~~iN~~t~~PG~RsCHRMVid~S~~ 325 (723)
T KOG2437|consen 258 PGMRGGHQMVID-VQTECVYLYGGWD-GTQD-------LADFWAYSVKEN---QWTCINRDTEGPGARSCHRMVIDISRR 325 (723)
T ss_pred ccccCcceEEEe-CCCcEEEEecCcc-cchh-------HHHHHhhcCCcc---eeEEeecCCCCCcchhhhhhhhhhhHh
Confidence 567899999986 56 999999987 5542 224578999999 9997543 45569999887754455
Q ss_pred eEEEcCCCC
Q 042680 383 KVFVGGSND 391 (530)
Q Consensus 383 rVlv~GG~~ 391 (530)
|+|..|-+-
T Consensus 326 KLYLlG~Y~ 334 (723)
T KOG2437|consen 326 KLYLLGRYL 334 (723)
T ss_pred HHhhhhhcc
Confidence 788888653
No 104
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=40.64 E-value=29 Score=34.40 Aligned_cols=80 Identities=21% Similarity=0.359 Sum_probs=49.4
Q ss_pred CCCCCcceec---CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCC--
Q 042680 296 TSPNPEWKIE---KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPR-- 370 (530)
Q Consensus 296 ~~~~~~W~~~---~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R-- 370 (530)
.|...+|+.. .++........+.|+||+++++.....+ +.+ +... + ..+.|++|+....+....
T Consensus 190 ~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------r~~-l~l~-~--S~D~g~tW~~~~~i~~~~~~ 258 (275)
T PF13088_consen 190 TDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDG-------RSN-LSLY-V--SEDGGKTWSRPKTIDDGPNG 258 (275)
T ss_dssp SSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSST-------SEE-EEEE-E--ECTTCEEEEEEEEEEEEE-C
T ss_pred CCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCC-------CCc-eEEE-E--EeCCCCcCCccEEEeCCCCC
Confidence 4446789852 6788777777788899999998873211 111 1222 2 334467998654443333
Q ss_pred -cccccceecCCCeEEE
Q 042680 371 -MYHSVANLLPDGKVFV 386 (530)
Q Consensus 371 -~yHS~a~LLpdGrVlv 386 (530)
...+..+.++||+|+|
T Consensus 259 ~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 259 DSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEEEEETTEEEE
T ss_pred cEECCeeEEeCCCcCCC
Confidence 4456677789999986
No 105
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=40.13 E-value=5.2e+02 Score=28.09 Aligned_cols=148 Identities=17% Similarity=0.211 Sum_probs=83.1
Q ss_pred EecCCcEEEEeCc--eEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680 200 LLPDGNVYVFANN--RSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG 277 (530)
Q Consensus 200 llp~G~lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~ 277 (530)
-.++|++++.|+. .+.+||.++.+-.+.++. . .-+. +++.++ .++.+++.+..+
T Consensus 254 f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~---h--s~~i--s~~~f~----------~d~~~l~s~s~d------- 309 (456)
T KOG0266|consen 254 FSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG---H--SDGI--SGLAFS----------PDGNLLVSASYD------- 309 (456)
T ss_pred ecCCCCEEEEecCCCcEEEEeccCCeEEEeeec---c--CCce--EEEEEC----------CCCCEEEEcCCC-------
Confidence 3468899999884 688999999876654432 1 1111 222222 378888888543
Q ss_pred cccccccccCCcEEEEEcCCCCCcce----ec--CCCCccccceeeee-cCCeEEEEcCCCCCCCCcccCCCCCcccEEe
Q 042680 278 EEEKRFVNALDDCARMVVTSPNPEWK----IE--KMPAPRTMADGVLL-PNGEVLIINGADLGSGGWHCADKPSLKPMLY 350 (530)
Q Consensus 278 ~~~~~~~~a~~s~~~~dp~~~~~~W~----~~--~M~~~R~~~~~vvL-pdG~VlViGG~~~g~~g~~~~~~p~~~~eiY 350 (530)
..+..+|... |. .+ ....+. ....+.- |||+-++++..+. ..-+|
T Consensus 310 ----------~~i~vwd~~~----~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~-------------~~~~w 361 (456)
T KOG0266|consen 310 ----------GTIRVWDLET----GSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDR-------------TLKLW 361 (456)
T ss_pred ----------ccEEEEECCC----CceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCC-------------eEEEE
Confidence 2356677642 33 11 222221 2222333 8999988887542 34556
Q ss_pred cCCCCC-CCceEEecCCCCCCcccccceecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCC
Q 042680 351 RPNAPE-GQRFAELAPTDIPRMYHSVANLLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYL 415 (530)
Q Consensus 351 DP~t~~-g~~Wt~la~~~~~R~yHS~a~LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl 415 (530)
|..... -..|...... .|...+ .+..++|+.++.|+.+. .|++|++...
T Consensus 362 ~l~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~i~sg~~d~-------------~v~~~~~~s~ 411 (456)
T KOG0266|consen 362 DLRSGKSVGTYTGHSNL--VRCIFS-PTLSTGGKLIYSGSEDG-------------SVYVWDSSSG 411 (456)
T ss_pred EccCCcceeeecccCCc--ceeEec-ccccCCCCeEEEEeCCc-------------eEEEEeCCcc
Confidence 665441 1233322222 133333 33357999999998543 4788888864
No 106
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.06 E-value=1.2e+02 Score=31.51 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=59.4
Q ss_pred EEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCc-ccEEecCCCCCCCceEEecCCCC
Q 042680 291 ARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSL-KPMLYRPNAPEGQRFAELAPTDI 368 (530)
Q Consensus 291 ~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~-~~eiYDP~t~~g~~Wt~la~~~~ 368 (530)
..||+.. ...-+.. +-..+..++..|--|||++|-.-=.+ .++.. -.-+||-. . .|+.++.-+.
T Consensus 94 ~vfD~~~-~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd---------fd~~rGViGvYd~r-~---~fqrvgE~~t 159 (366)
T COG3490 94 MVFDPNG-AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND---------FDPNRGVIGVYDAR-E---GFQRVGEFST 159 (366)
T ss_pred EEECCCC-CcCcEEEecccCceeecccccCCCCcEEEeecCC---------CCCCCceEEEEecc-c---ccceeccccc
Confidence 4577764 1112222 33334467778888999987643211 11111 35689987 5 6777666554
Q ss_pred CCcccccceecCCCeEEEcCCC---CCCCCccccCCCCcceEEEEcCCC
Q 042680 369 PRMYHSVANLLPDGKVFVGGSN---DNDGYFEFAKFPTELRLEKFTPPY 414 (530)
Q Consensus 369 ~R~yHS~a~LLpdGrVlv~GG~---~~~~~~~~~~~~t~~~vE~y~Ppy 414 (530)
--+.-.-.+|++|||.+|+-++ .+.++ + -+++++|.-.|.+
T Consensus 160 ~GiGpHev~lm~DGrtlvvanGGIethpdf---g--R~~lNldsMePSl 203 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVANGGIETHPDF---G--RTELNLDSMEPSL 203 (366)
T ss_pred CCcCcceeEEecCCcEEEEeCCceeccccc---C--ccccchhhcCccE
Confidence 4443334678899998765443 33221 1 2367777777777
No 107
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=37.83 E-value=4e+02 Score=29.80 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=17.5
Q ss_pred ecCCcEEEEeC-ceEEEEeCCCCe
Q 042680 201 LPDGNVYVFAN-NRSVVHDPKANK 223 (530)
Q Consensus 201 lp~G~lfv~Gg-~~~e~yDp~tn~ 223 (530)
+.+|+||+... .....+|.+|++
T Consensus 67 v~~g~vyv~s~~g~v~AlDa~TGk 90 (527)
T TIGR03075 67 VVDGVMYVTTSYSRVYALDAKTGK 90 (527)
T ss_pred EECCEEEEECCCCcEEEEECCCCc
Confidence 34899998654 467889999875
No 108
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=36.72 E-value=22 Score=23.41 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=13.7
Q ss_pred cccccceecCCCeEEEcCCCCC
Q 042680 371 MYHSVANLLPDGKVFVGGSNDN 392 (530)
Q Consensus 371 ~yHS~a~LLpdGrVlv~GG~~~ 392 (530)
.+|+.++ +.||+||.-|.|.+
T Consensus 8 ~~ht~al-~~~g~v~~wG~n~~ 28 (30)
T PF13540_consen 8 GYHTCAL-TSDGEVYCWGDNNY 28 (30)
T ss_dssp SSEEEEE-E-TTEEEEEE--TT
T ss_pred CCEEEEE-EcCCCEEEEcCCcC
Confidence 4687554 57999999998754
No 109
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=34.82 E-value=14 Score=27.00 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHhcccccCCCCCCCCcEE
Q 042680 7 KKVQSLILLAAVLLLVNNAAAAPAGGFLGSWE 38 (530)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~ 38 (530)
||+...+++++.++|+.|.+.--.|-..|+-.
T Consensus 2 kKi~~~~i~~~~~~L~aCQaN~iRDvqGGtVa 33 (46)
T PF02402_consen 2 KKIIFIGIFLLTMLLAACQANYIRDVQGGTVA 33 (46)
T ss_pred cEEEEeHHHHHHHHHHHhhhcceecCCCceEC
Confidence 46666677777789999998887766555433
No 110
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=34.81 E-value=1e+02 Score=32.94 Aligned_cols=82 Identities=27% Similarity=0.274 Sum_probs=49.1
Q ss_pred CcccccceeccCCcEE---EccCCeEEEeccCCCCcEEEE-cCCCCCCCceEEeccccccccccCCCCCCCccccccCCc
Q 042680 119 DTWCSSGGLSADGRLV---MLSDGSFLVYGGRDAFSYEYV-PVEKESNKAAIAFPFLFETQDFLERPGNPKGRFRLENNL 194 (530)
Q Consensus 119 ~~~~~~~~~l~dG~l~---~L~dG~v~VvGG~~~~s~E~y-P~~~~~~~~~~~~p~l~~t~d~~~~~~~~~~~~~~~~~~ 194 (530)
..+|++...=-.+.++ --|+|+.++.|+-+ .++.+| +.+.+ |+ .| .+++ .||
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD-~TvR~WD~~TeT--------p~--~t---------~KgH----~~W 159 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGD-TTVRLWDLDTET--------PL--FT---------CKGH----KNW 159 (480)
T ss_pred cceeccccCCCCCcEEEEEecCCCceEEecCCC-ceEEeeccCCCC--------cc--ee---------ecCC----ccE
Confidence 4566544322223333 34589999998755 578888 76642 22 11 1122 233
Q ss_pred cceEEEecCCcEEEEeC--ceEEEEeCCCCeE
Q 042680 195 YPFVYLLPDGNVYVFAN--NRSVVHDPKANKI 224 (530)
Q Consensus 195 Yp~~~llp~G~lfv~Gg--~~~e~yDp~tn~w 224 (530)
--.+.-.|||+..+.|- .+..+|||++++-
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 22334458999999986 4678999999863
No 111
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=34.55 E-value=1.9e+02 Score=23.48 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=38.7
Q ss_pred CCccccCCEEEEEEEcC--CCCccceEEEEEEcCCccccCCCCCcceE-EeeeeeeecccCCCceEEEEEcCCCCCcCCC
Q 042680 432 DKAATYGKWVYLRVKSS--EPLTINYVQVSIVAPPFVTHGISMNQRML-FLSVIELKNNVAPGVDEVVVAAPPTSALAPP 508 (530)
Q Consensus 432 p~~~~~g~~~~v~~~~~--~~~~~~~~~v~l~~~~~~THs~n~~QR~v-~L~~~~~~~~~~~g~~~~~v~~P~~~~v~pp 508 (530)
|..+..|+.++|++... +...+..+.|.+...+... +++.| .|.. +...+++++..+. .|
T Consensus 12 ~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~-----~~~~i~~L~~--------g~~~~v~~~~~~~----~~ 74 (101)
T PF07705_consen 12 PSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV-----STVTIPSLAP--------GESETVTFTWTPP----SP 74 (101)
T ss_dssp -SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE-----EEEEESEB-T--------TEEEEEEEEEE-S----S-
T ss_pred CCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee-----ccEEECCcCC--------CcEEEEEEEEEeC----CC
Confidence 88889999877776642 2223456788887766655 44444 3322 2234555544433 67
Q ss_pred cceEEEEEc
Q 042680 509 GYYLLSVVN 517 (530)
Q Consensus 509 G~ymlfv~~ 517 (530)
|.|-|.++.
T Consensus 75 G~~~i~~~i 83 (101)
T PF07705_consen 75 GSYTIRVVI 83 (101)
T ss_dssp CEEEEEEEE
T ss_pred CeEEEEEEE
Confidence 888877764
No 112
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=34.00 E-value=31 Score=26.48 Aligned_cols=41 Identities=10% Similarity=0.138 Sum_probs=23.9
Q ss_pred ceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCce
Q 042680 314 ADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRF 360 (530)
Q Consensus 314 ~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~W 360 (530)
.++++.|||||++.|-...+ . .+......+|+|+-..-.+|
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~-~-----~~~~~~l~Rln~DGsLDttF 44 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNS-S-----GNNDFVLARLNADGSLDTTF 44 (55)
T ss_pred EEEEECCCCcEEEEEEeecC-C-----CcccEEEEEECCCCCccCCc
Confidence 35677899999998854321 0 11233466777765433333
No 113
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=33.51 E-value=5.8e+02 Score=27.34 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=50.5
Q ss_pred ceEEEEeCCCCeEEEEccCCCCCCCccC-CCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccccccccccCCcE
Q 042680 212 NRSVVHDPKANKIIREFPQLPGGARSYP-ATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKRFVNALDDC 290 (530)
Q Consensus 212 ~~~e~yDp~tn~w~~~~p~mp~~~r~yp-~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~~~~a~~s~ 290 (530)
..+-|||...|+.++ .|- .-.+.-.|.+-| .-.+++.||.+ .+|
T Consensus 215 k~VKCwDLe~nkvIR----------~YhGHlS~V~~L~lhP--------Tldvl~t~grD-----------------st~ 259 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIR----------HYHGHLSGVYCLDLHP--------TLDVLVTGGRD-----------------STI 259 (460)
T ss_pred CeeEEEechhhhhHH----------HhccccceeEEEeccc--------cceeEEecCCc-----------------ceE
Confidence 457899999998773 332 112222343332 46888999975 234
Q ss_pred EEEEcCCCCCcceec--CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680 291 ARMVVTSPNPEWKIE--KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP 355 (530)
Q Consensus 291 ~~~dp~~~~~~W~~~--~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~ 355 (530)
-+.|.....+.-... ..+..|++...+ |++|+- |-.+ .++-+||-..+
T Consensus 260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~---dpqvit-~S~D-------------~tvrlWDl~ag 309 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLSGHTNPVASVMCQPT---DPQVIT-GSHD-------------STVRLWDLRAG 309 (460)
T ss_pred EEeeecccceEEEecCCCCcceeEEeecC---CCceEE-ecCC-------------ceEEEeeeccC
Confidence 556665322222222 345555554422 777753 2222 15778888776
No 114
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=32.22 E-value=7.1e+02 Score=27.31 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=18.8
Q ss_pred EecCCcEEEEeC-ceEEEEeCCCCe--EE
Q 042680 200 LLPDGNVYVFAN-NRSVVHDPKANK--II 225 (530)
Q Consensus 200 llp~G~lfv~Gg-~~~e~yDp~tn~--w~ 225 (530)
++.+|+||+... .....+|.++++ |.
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~ 86 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDAATGKVLWR 86 (488)
T ss_pred EEECCEEEEeCCCCcEEEEECCCChhhce
Confidence 344899998754 467888998875 55
No 115
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.14 E-value=2e+02 Score=29.91 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=24.8
Q ss_pred eeEEEEeCCCCcEEE-ccccC-CcccccceeccCCcEE
Q 042680 99 CHSIFYDYNKNAVKA-LKVQS-DTWCSSGGLSADGRLV 134 (530)
Q Consensus 99 a~~~~yDp~t~~w~~-l~~~~-~~~~~~~~~l~dG~l~ 134 (530)
.++..||+.+.+-.. +.... ..|+..++|.+||+++
T Consensus 28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~L 65 (305)
T PF07433_consen 28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLL 65 (305)
T ss_pred cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEE
Confidence 457788888887553 33333 3477778888888888
No 116
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=29.66 E-value=2.5e+02 Score=28.82 Aligned_cols=104 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred EEEecCccCCccccccccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCC
Q 042680 263 VLICGGSVREGLYLGEEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADK 342 (530)
Q Consensus 263 I~v~GG~~~~~~~~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~ 342 (530)
|||-|-....... +|..-| .||+. +.+|....=...=.-.++...-+.+|||.|-.. ....
T Consensus 1 v~VGG~F~~aGsL---------~C~~lC-~yd~~--~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft-------~~~~ 61 (281)
T PF12768_consen 1 VYVGGSFTSAGSL---------PCPGLC-LYDTD--NSQWSSPGNGISGTVTDLQWASNNQLLVGGNFT-------LNGT 61 (281)
T ss_pred CEEeeecCCCCCc---------CCCEEE-EEECC--CCEeecCCCCceEEEEEEEEecCCEEEEEEeeE-------ECCC
Q ss_pred CCcccEEecCCCCCCCceEEecCCC---CCCcccccceecCCC-eEEEcC
Q 042680 343 PSLKPMLYRPNAPEGQRFAELAPTD---IPRMYHSVANLLPDG-KVFVGG 388 (530)
Q Consensus 343 p~~~~eiYDP~t~~g~~Wt~la~~~---~~R~yHS~a~LLpdG-rVlv~G 388 (530)
.......||.++. +|+.+.... ++..-.+..+...|+ +++++|
T Consensus 62 ~~~~la~yd~~~~---~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG 108 (281)
T PF12768_consen 62 NSSNLATYDFKNQ---TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAG 108 (281)
T ss_pred CceeEEEEecCCC---eeeecCCcccccCCCcEEEEEeeccCCceEEEec
No 117
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=29.22 E-value=2.6e+02 Score=24.68 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=13.3
Q ss_pred ceEEEEEcCCCCCcCCCcceEEEEE
Q 042680 492 VDEVVVAAPPTSALAPPGYYLLSVV 516 (530)
Q Consensus 492 ~~~~~v~~P~~~~v~ppG~ymlfv~ 516 (530)
.-+|.|+.|+| ||=|.|-|-|-
T Consensus 94 ~~tv~V~spa~---A~VG~y~l~v~ 115 (118)
T PF00868_consen 94 SVTVSVTSPAN---APVGRYKLSVE 115 (118)
T ss_dssp EEEEEEE--TT---S--EEEEEEEE
T ss_pred EEEEEEECCCC---CceEEEEEEEE
Confidence 46777888876 56699998764
No 118
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=28.78 E-value=5.6e+02 Score=25.04 Aligned_cols=16 Identities=44% Similarity=0.912 Sum_probs=14.0
Q ss_pred CccceEEEecCCcEEE
Q 042680 193 NLYPFVYLLPDGNVYV 208 (530)
Q Consensus 193 ~~Yp~~~llp~G~lfv 208 (530)
--||.+..++||+|+|
T Consensus 260 ~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 260 SGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEEEETTEEEE
T ss_pred EECCeeEEeCCCcCCC
Confidence 3589999999999986
No 119
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=28.44 E-value=6.8e+02 Score=25.93 Aligned_cols=78 Identities=14% Similarity=0.274 Sum_probs=39.5
Q ss_pred EEcCCCCCcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcc
Q 042680 293 MVVTSPNPEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMY 372 (530)
Q Consensus 293 ~dp~~~~~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~y 372 (530)
|.-.+....|+...-...-...+...++||++++++-. |. --.-+||-.. .|+........|.
T Consensus 127 y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~--G~-----------~~~s~~~G~~---~w~~~~r~~~~ri- 189 (302)
T PF14870_consen 127 YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR--GN-----------FYSSWDPGQT---TWQPHNRNSSRRI- 189 (302)
T ss_dssp EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT--SS-----------EEEEE-TT-S---S-EEEE--SSS-E-
T ss_pred EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc--cc-----------EEEEecCCCc---cceEEccCcccee-
Confidence 44455567898752223344556677899999888843 21 1234677766 8987665544443
Q ss_pred cccceecCCCeEEEcC
Q 042680 373 HSVANLLPDGKVFVGG 388 (530)
Q Consensus 373 HS~a~LLpdGrVlv~G 388 (530)
.++. .-+|+.++++.
T Consensus 190 q~~g-f~~~~~lw~~~ 204 (302)
T PF14870_consen 190 QSMG-FSPDGNLWMLA 204 (302)
T ss_dssp EEEE-E-TTS-EEEEE
T ss_pred hhce-ecCCCCEEEEe
Confidence 3433 34899997765
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=28.27 E-value=1.6e+02 Score=30.53 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680 289 DCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP 355 (530)
Q Consensus 289 s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~ 355 (530)
++..+||.. +-... .+...+++.. -+ .|..+|+|+.++ .+.+||-.+.
T Consensus 117 ~ik~wD~R~---~~~~~~~d~~kkVy~~-~v--~g~~LvVg~~~r-------------~v~iyDLRn~ 165 (323)
T KOG1036|consen 117 TIKFWDPRN---KVVVGTFDQGKKVYCM-DV--SGNRLVVGTSDR-------------KVLIYDLRNL 165 (323)
T ss_pred cEEEEeccc---cccccccccCceEEEE-ec--cCCEEEEeecCc-------------eEEEEEcccc
Confidence 467788762 22222 3444455543 32 588888888653 5778887765
No 121
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=28.05 E-value=1.2e+02 Score=19.50 Aligned_cols=15 Identities=47% Similarity=0.866 Sum_probs=10.9
Q ss_pred cceEEEe-cCCcEEEE
Q 042680 195 YPFVYLL-PDGNVYVF 209 (530)
Q Consensus 195 Yp~~~ll-p~G~lfv~ 209 (530)
+|+..++ ++|+|||.
T Consensus 3 ~P~gvav~~~g~i~Va 18 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVA 18 (28)
T ss_dssp SEEEEEEETTSEEEEE
T ss_pred CCcEEEEeCCCCEEEE
Confidence 4665444 79999986
No 122
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=28.05 E-value=2.5e+02 Score=28.84 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=37.7
Q ss_pred CCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceEEecCCCCCCcccccce----ecCCC
Q 042680 307 MPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFAELAPTDIPRMYHSVAN----LLPDG 382 (530)
Q Consensus 307 M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt~la~~~~~R~yHS~a~----LLpdG 382 (530)
+..+-..+--+ =||+||+..-|.+ + ..-+| .|.++.|+.+- .||+.++ .-||-
T Consensus 249 lknpGv~gvrI-RpD~KIlATAGWD-~------------RiRVy--------swrtl~pLAVL-kyHsagvn~vAfspd~ 305 (323)
T KOG0322|consen 249 LKNPGVSGVRI-RPDGKILATAGWD-H------------RIRVY--------SWRTLNPLAVL-KYHSAGVNAVAFSPDC 305 (323)
T ss_pred ecCCCccceEE-ccCCcEEeecccC-C------------cEEEE--------EeccCCchhhh-hhhhcceeEEEeCCCC
Confidence 33444444434 4899999988875 1 22334 68888888764 4788554 34565
Q ss_pred eEEEcCCC
Q 042680 383 KVFVGGSN 390 (530)
Q Consensus 383 rVlv~GG~ 390 (530)
.|+.++|.
T Consensus 306 ~lmAaask 313 (323)
T KOG0322|consen 306 ELMAAASK 313 (323)
T ss_pred chhhhccC
Confidence 66666653
No 123
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=27.06 E-value=6.7e+02 Score=27.34 Aligned_cols=110 Identities=17% Similarity=0.258 Sum_probs=63.8
Q ss_pred ecCCcEEEEeCce--EEEEeCCCCeEEEEccCCCCC-CCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680 201 LPDGNVYVFANNR--SVVHDPKANKIIREFPQLPGG-ARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG 277 (530)
Q Consensus 201 lp~G~lfv~Gg~~--~e~yDp~tn~w~~~~p~mp~~-~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~ 277 (530)
-+||-|-..||.+ +.+||.++++-+-.+ .+. ..-| +.+ .- .+|.-++.||.+
T Consensus 312 ~~DGSL~~tGGlD~~~RvWDlRtgr~im~L---~gH~k~I~---~V~-fs-----------PNGy~lATgs~D------- 366 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLGRVWDLRTGRCIMFL---AGHIKEIL---SVA-FS-----------PNGYHLATGSSD------- 366 (459)
T ss_pred cCCCceeeccCccchhheeecccCcEEEEe---ccccccee---eEe-EC-----------CCceEEeecCCC-------
Confidence 4699999999964 689999999765222 221 1112 111 11 378888888865
Q ss_pred cccccccccCCcEEEEEcCCCCCcceecCCCCccccceeeee-c-CCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680 278 EEEKRFVNALDDCARMVVTSPNPEWKIEKMPAPRTMADGVLL-P-NGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP 355 (530)
Q Consensus 278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~~M~~~R~~~~~vvL-p-dG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~ 355 (530)
++|-+.|+..-.... .||.-+...+-|-. | -|+.++..+++. ++-+|.+ .
T Consensus 367 ----------nt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g~fL~TasyD~-------------t~kiWs~--~ 418 (459)
T KOG0272|consen 367 ----------NTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEGYFLVTASYDN-------------TVKIWST--R 418 (459)
T ss_pred ----------CcEEEeeecccccce---ecccccchhhheEecccCCeEEEEcccCc-------------ceeeecC--C
Confidence 357777775311211 35544433333333 2 578888887762 4556665 3
Q ss_pred CCCceEEecCC
Q 042680 356 EGQRFAELAPT 366 (530)
Q Consensus 356 ~g~~Wt~la~~ 366 (530)
.|+.+..+
T Consensus 419 ---~~~~~ksL 426 (459)
T KOG0272|consen 419 ---TWSPLKSL 426 (459)
T ss_pred ---Ccccchhh
Confidence 56665444
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=26.96 E-value=2.1e+02 Score=30.57 Aligned_cols=131 Identities=17% Similarity=0.235 Sum_probs=72.0
Q ss_pred CCcEEEEeCceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCcccccccccc
Q 042680 203 DGNVYVFANNRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEEEKR 282 (530)
Q Consensus 203 ~G~lfv~Gg~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~~~~ 282 (530)
.+.+|+.+|...++||+..+. .+.+|.- .++.-.+.-. + ..+-.|+.++|.+
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~---Pv~smsw---G~Dti~svkf---------N-pvETsILas~~sD------------ 209 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDN---PVSSMSW---GADSISSVKF---------N-PVETSILASCASD------------ 209 (433)
T ss_pred ccccccccCceeeecccccCC---ccceeec---CCCceeEEec---------C-CCcchheeeeccC------------
Confidence 478999999999999998765 2333321 1221111111 1 1366788888865
Q ss_pred ccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE
Q 042680 283 FVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA 361 (530)
Q Consensus 283 ~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt 361 (530)
.+...||.....+-=... .|..--..-+ |.+-+|+++-.+. ....||-..-
T Consensus 210 -----rsIvLyD~R~~~Pl~KVi~~mRTN~Iswn----PeafnF~~a~ED~-------------nlY~~DmR~l------ 261 (433)
T KOG0268|consen 210 -----RSIVLYDLRQASPLKKVILTMRTNTICWN----PEAFNFVAANEDH-------------NLYTYDMRNL------ 261 (433)
T ss_pred -----CceEEEecccCCccceeeeeccccceecC----ccccceeeccccc-------------cceehhhhhh------
Confidence 234568876533332333 5544332222 6777777665431 3445665322
Q ss_pred EecCCCCCCccccccee----cCCCeEEEcCCCC
Q 042680 362 ELAPTDIPRMYHSVANL----LPDGKVFVGGSND 391 (530)
Q Consensus 362 ~la~~~~~R~yHS~a~L----LpdGrVlv~GG~~ 391 (530)
-.|+.+ ...|..|+| -|-|+=+|.||.+
T Consensus 262 -~~p~~v-~~dhvsAV~dVdfsptG~EfvsgsyD 293 (433)
T KOG0268|consen 262 -SRPLNV-HKDHVSAVMDVDFSPTGQEFVSGSYD 293 (433)
T ss_pred -cccchh-hcccceeEEEeccCCCcchhcccccc
Confidence 012333 345777876 3557788888753
No 125
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=26.70 E-value=3.3e+02 Score=30.48 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=41.5
Q ss_pred EEEEEcCCCCCcceec-CCCCccc-------cceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCCCCCceE
Q 042680 290 CARMVVTSPNPEWKIE-KMPAPRT-------MADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAPEGQRFA 361 (530)
Q Consensus 290 ~~~~dp~~~~~~W~~~-~M~~~R~-------~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt 361 (530)
+..+|..+....|+.. ..+.... ....+.+-+++||+..... ....+|.++.+ ..|+
T Consensus 81 v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg--------------~l~ALDa~TGk-~~W~ 145 (527)
T TIGR03075 81 VYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDA--------------RLVALDAKTGK-VVWS 145 (527)
T ss_pred EEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCC--------------EEEEEECCCCC-EEee
Confidence 5667876655678765 2221100 0122345588888743211 46678877651 2576
Q ss_pred EecCCCCCCcc-cccceecCCCeEEEcC
Q 042680 362 ELAPTDIPRMY-HSVANLLPDGKVFVGG 388 (530)
Q Consensus 362 ~la~~~~~R~y-HS~a~LLpdGrVlv~G 388 (530)
.-.. .....+ .+.+-++-+|+|++..
T Consensus 146 ~~~~-~~~~~~~~tssP~v~~g~Vivg~ 172 (527)
T TIGR03075 146 KKNG-DYKAGYTITAAPLVVKGKVITGI 172 (527)
T ss_pred cccc-cccccccccCCcEEECCEEEEee
Confidence 4211 111111 1223334589998864
No 126
>PRK10397 lipoprotein; Provisional
Probab=25.59 E-value=85 Score=28.32 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcccccCCCCC---------CCCcEEEccCCc
Q 042680 11 SLILLAAVLLLVNNAAAAPAGG---------FLGSWELISQNA 44 (530)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---------~~g~w~~~~~~~ 44 (530)
.+|++.+++.|++||..+.+.. ..|.|+...+..
T Consensus 3 Kii~~~a~~~LaGCa~~~nY~~vvktPaPa~l~GyWqs~gpq~ 45 (137)
T PRK10397 3 KLAIAGALMALAGCAEVENYNDVVKTPAPAGLAGYWQTKGPQR 45 (137)
T ss_pred hhHHHHHHHHhhccccccchHhhhcCCCCccccceeeccCCcc
Confidence 3577788899999997765432 349999876544
No 127
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=25.04 E-value=5e+02 Score=26.51 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=53.3
Q ss_pred cCCcEEEEeC----ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccc
Q 042680 202 PDGNVYVFAN----NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLG 277 (530)
Q Consensus 202 p~G~lfv~Gg----~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~ 277 (530)
.+|.||-.-| .+...||+.+++..+ .-++|. .|..-|.++ .+++||.. .+
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~-~~~l~~---~~FgEGit~-------------~~d~l~qL------TW--- 107 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQ-SVPLPP---RYFGEGITI-------------LGDKLYQL------TW--- 107 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEE-EEE-TT---T--EEEEEE-------------ETTEEEEE------ES---
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEE-EEECCc---cccceeEEE-------------ECCEEEEE------Ee---
Confidence 6899999876 357899999998763 334552 343234443 36788876 12
Q ss_pred cccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCCC
Q 042680 278 EEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNAP 355 (530)
Q Consensus 278 ~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t~ 355 (530)
-...+-+||+.. .+.. ..+.+.-.-+.+ --+.++++..|.+ .....||++-
T Consensus 108 --------k~~~~f~yd~~t----l~~~~~~~y~~EGWGLt-~dg~~Li~SDGS~--------------~L~~~dP~~f 159 (264)
T PF05096_consen 108 --------KEGTGFVYDPNT----LKKIGTFPYPGEGWGLT-SDGKRLIMSDGSS--------------RLYFLDPETF 159 (264)
T ss_dssp --------SSSEEEEEETTT----TEEEEEEE-SSS--EEE-ECSSCEEEE-SSS--------------EEEEE-TTT-
T ss_pred --------cCCeEEEEcccc----ceEEEEEecCCcceEEE-cCCCEEEEECCcc--------------ceEEECCccc
Confidence 134567788742 4432 223232333333 3244555555543 4667888754
No 128
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=24.37 E-value=52 Score=31.21 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHhccccc
Q 042680 7 KKVQSLILLAAVLLLVNNAAA 27 (530)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (530)
|+++-+|+|...|+|++||..
T Consensus 2 K~~~~li~l~~~LlL~GCAg~ 22 (171)
T PRK13733 2 KQISLLIPLLGTLLLSGCAGT 22 (171)
T ss_pred chhhHHHHHHHHHHhccccCC
Confidence 677777888777889999984
No 129
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=23.97 E-value=1.7e+02 Score=19.75 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=17.2
Q ss_pred cEEEEe--CceEEEEeCCCCeEEEEcc
Q 042680 205 NVYVFA--NNRSVVHDPKANKIIREFP 229 (530)
Q Consensus 205 ~lfv~G--g~~~e~yDp~tn~w~~~~p 229 (530)
+||+.- .++..++|+.+.+....++
T Consensus 5 ~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 466653 4577789999988775554
No 130
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=23.70 E-value=1.2e+02 Score=25.52 Aligned_cols=46 Identities=11% Similarity=0.011 Sum_probs=23.8
Q ss_pred CC-CeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEcc
Q 042680 56 KT-DQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKALK 115 (530)
Q Consensus 56 ~~-gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l~ 115 (530)
.+ |+|||-|.... .... .+. -...+.++......|||.|++.+-|.
T Consensus 7 ~~~g~vYfTdsS~~----~~~~----~~~------~~~le~~~~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 7 QDTGTVYFTDSSSR----YDRR----DWV------YDLLEGRPTGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp TTT--EEEEES-SS------TT----GHH------HHHHHT---EEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEeCccc----cCcc----cee------eeeecCCCCcCEEEEECCCCeEEEeh
Confidence 55 99999988642 1100 100 01113357788899999999987763
No 131
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=23.55 E-value=78 Score=20.41 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=8.0
Q ss_pred HHHHHHHHhcccc
Q 042680 14 LLAAVLLLVNNAA 26 (530)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (530)
.+++++.|++|+.
T Consensus 13 ~l~a~~~LagCss 25 (25)
T PF08139_consen 13 PLLALFMLAGCSS 25 (25)
T ss_pred HHHHHHHHhhccC
Confidence 3445555888873
No 132
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=23.50 E-value=5.5e+02 Score=27.22 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=0.0
Q ss_pred cchheeeeeecCCCCeEEEEeeeccCcCccCCCCCCCCccccCCCccccccccCceeEEEEeCCCCcEEEc---cccC--
Q 042680 44 AGISAMHTQLLPKTDQIAVFDASVWHISRLQLPQEKRPCFWHHNKLTNQTAEDCWCHSIFYDYNKNAVKAL---KVQS-- 118 (530)
Q Consensus 44 ~~v~a~h~~~l~~~gkv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~yDp~t~~w~~l---~~~~-- 118 (530)
.|-..-|++.= +|+|+..+=---++ +-.++.||+...+++.+ ..++
T Consensus 189 ~G~GPRHi~FH-pn~k~aY~v~EL~s----------------------------tV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 189 PGAGPRHIVFH-PNGKYAYLVNELNS----------------------------TVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred CCCCcceEEEc-CCCcEEEEEeccCC----------------------------EEEEEEEcCCCceEEEeeeeccCccc
Q ss_pred ---CcccccceeccCCcEE---------------------------------------EccCCeEEEeccCCCCcEEEE-
Q 042680 119 ---DTWCSSGGLSADGRLV---------------------------------------MLSDGSFLVYGGRDAFSYEYV- 155 (530)
Q Consensus 119 ---~~~~~~~~~l~dG~l~---------------------------------------~L~dG~v~VvGG~~~~s~E~y- 155 (530)
+.||+.-...+||+.+ .-++|+.+|+-+.++.++.+|
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Q ss_pred --cCCC
Q 042680 156 --PVEK 159 (530)
Q Consensus 156 --P~~~ 159 (530)
+.++
T Consensus 320 ~d~~TG 325 (346)
T COG2706 320 RDKETG 325 (346)
T ss_pred EcCCCc
No 133
>PRK11443 lipoprotein; Provisional
Probab=23.22 E-value=45 Score=29.96 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcccccC---CCCCCCCcEEEcc
Q 042680 11 SLILLAAVLLLVNNAAAA---PAGGFLGSWELIS 41 (530)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~---~~~~~~g~w~~~~ 41 (530)
.+|+++++|+|++|++.. +..-..+.|..+.
T Consensus 3 ~~~~~~~~~lLsgCa~~~~~~~~~~~~~dW~~~G 36 (124)
T PRK11443 3 KFIAPLLALLLSGCQIDPYTHAPTLTSTDWYDAG 36 (124)
T ss_pred HHHHHHHHHHHHhccCCCCCChhhhcccCHHHHH
Confidence 456777778899999854 1122357788764
No 134
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=22.67 E-value=1.8e+02 Score=30.11 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=48.2
Q ss_pred CCCCcccccee-eeecCCe--EEEEcCCCC------CCCCcccCCCCCcccEEecCCCCCCCceE--EecCCCCCCcccc
Q 042680 306 KMPAPRTMADG-VLLPNGE--VLIINGADL------GSGGWHCADKPSLKPMLYRPNAPEGQRFA--ELAPTDIPRMYHS 374 (530)
Q Consensus 306 ~M~~~R~~~~~-vvLpdG~--VlViGG~~~------g~~g~~~~~~p~~~~eiYDP~t~~g~~Wt--~la~~~~~R~yHS 374 (530)
+.|.+|..|++ |+-..|| +.++||... -+.-|..--+-.-.+.+.|.+-. ..+ .++.+...-.+|-
T Consensus 83 dvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFG---C~tah~lpEl~dG~SFHv 159 (337)
T PF03089_consen 83 DVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFG---CCTAHTLPELQDGQSFHV 159 (337)
T ss_pred CCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccc---ccccccchhhcCCeEEEE
Confidence 68999988876 3344554 566788542 11112111111124456677655 544 4666777777774
Q ss_pred cceecCCCeEEEcCCCCC
Q 042680 375 VANLLPDGKVFVGGSNDN 392 (530)
Q Consensus 375 ~a~LLpdGrVlv~GG~~~ 392 (530)
+. --+..||+.||-..
T Consensus 160 sl--ar~D~VYilGGHsl 175 (337)
T PF03089_consen 160 SL--ARNDCVYILGGHSL 175 (337)
T ss_pred EE--ecCceEEEEccEEc
Confidence 33 35999999999643
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=21.49 E-value=1.1e+03 Score=26.00 Aligned_cols=157 Identities=15% Similarity=0.228 Sum_probs=80.6
Q ss_pred EecCCc-EEEEeCc--eEEEEeCCCCeEEEEccCCCCCC-CccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccc
Q 042680 200 LLPDGN-VYVFANN--RSVVHDPKANKIIREFPQLPGGA-RSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLY 275 (530)
Q Consensus 200 llp~G~-lfv~Gg~--~~e~yDp~tn~w~~~~p~mp~~~-r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~ 275 (530)
-.|+|+ ..+++|+ -...||..+.+.. ++.++-+.. +... -..| . ..+.++++-|.. ++
T Consensus 265 f~p~G~~~i~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e--~FeV----S--------hd~~fia~~G~~--G~- 326 (514)
T KOG2055|consen 265 FAPNGHSVIFTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSME--RFEV----S--------HDSNFIAIAGNN--GH- 326 (514)
T ss_pred ecCCCceEEEecccceEEEEeeccccccc-cccCCCCcccchhh--eeEe----c--------CCCCeEEEcccC--ce-
Confidence 456888 6666775 4678999999887 565543221 1110 1122 1 245666666654 22
Q ss_pred cccccccccccCCcEEEEEcCCCCCcceec-CCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680 276 LGEEEKRFVNALDDCARMVVTSPNPEWKIE-KMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA 354 (530)
Q Consensus 276 ~~~~~~~~~~a~~s~~~~dp~~~~~~W~~~-~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t 354 (530)
++-+...+..|-.. .|+ +++ .+...-.||+.+++-|.. | ++.+||-.+
T Consensus 327 ----------------I~lLhakT~eli~s~Kie-G~v-~~~~fsSdsk~l~~~~~~-G------------eV~v~nl~~ 375 (514)
T KOG2055|consen 327 ----------------IHLLHAKTKELITSFKIE-GVV-SDFTFSSDSKELLASGGT-G------------EVYVWNLRQ 375 (514)
T ss_pred ----------------EEeehhhhhhhhheeeec-cEE-eeEEEecCCcEEEEEcCC-c------------eEEEEecCC
Confidence 11111113444432 232 121 222223577665555432 1 577888877
Q ss_pred CCC-CceEEecCCCCCCcccccce-ecCCCeEEEcCCCCCCCCccccCCCCcceEEEEcCCCCCCcccCCCCc
Q 042680 355 PEG-QRFAELAPTDIPRMYHSVAN-LLPDGKVFVGGSNDNDGYFEFAKFPTELRLEKFTPPYLAPEYAALRPA 425 (530)
Q Consensus 355 ~~g-~~Wt~la~~~~~R~yHS~a~-LLpdGrVlv~GG~~~~~~~~~~~~~t~~~vE~y~Ppyl~~~~~~~RP~ 425 (530)
+.- .+|..-... |++.+ +-++|+.+..|++.. -|-+|+=..-+.. .++||.
T Consensus 376 ~~~~~rf~D~G~v------~gts~~~S~ng~ylA~GS~~G-------------iVNIYd~~s~~~s-~~PkPi 428 (514)
T KOG2055|consen 376 NSCLHRFVDDGSV------HGTSLCISLNGSYLATGSDSG-------------IVNIYDGNSCFAS-TNPKPI 428 (514)
T ss_pred cceEEEEeecCcc------ceeeeeecCCCceEEeccCcc-------------eEEEeccchhhcc-CCCCch
Confidence 732 367643333 44333 234999999998632 2557775554332 235774
No 136
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=21.07 E-value=3.1e+02 Score=21.78 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=28.9
Q ss_pred ccCCEEEEEEEc--CCCCccceEEEEEEcC-CccccCCCCCcceEEeeeeeeecccCCCceEEEEEcCCCCCcCCCcceE
Q 042680 436 TYGKWVYLRVKS--SEPLTINYVQVSIVAP-PFVTHGISMNQRMLFLSVIELKNNVAPGVDEVVVAAPPTSALAPPGYYL 512 (530)
Q Consensus 436 ~~g~~~~v~~~~--~~~~~~~~~~v~l~~~-~~~THs~n~~QR~v~L~~~~~~~~~~~g~~~~~v~~P~~~~v~ppG~ym 512 (530)
..|++++++++. .+......++++|-.| |+. .....++.-.|+--.. -..+++|+.|.+ ++||-|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~--~~~~~~~~~~l~pG~s------~~~~~~V~vp~~---a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT--VSASPASVPSLPPGES------VTVTFTVTVPAD---AAPGTYT 70 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE-----EEEEE--B-TTSE------EEEEEEEEE-TT-----SEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc--ccCCccccccCCCCCE------EEEEEEEECCCC---CCCceEE
Confidence 457766655553 2212234566666655 333 1111222223322111 135667788865 5689998
Q ss_pred EEEE
Q 042680 513 LSVV 516 (530)
Q Consensus 513 lfv~ 516 (530)
|=+.
T Consensus 71 v~~~ 74 (78)
T PF10633_consen 71 VTVT 74 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8664
No 137
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.01 E-value=8.5e+02 Score=29.92 Aligned_cols=141 Identities=12% Similarity=0.147 Sum_probs=74.3
Q ss_pred ecCCcEEEEeC-ceEEEEeCCCCeEEEEccCCCCCCCccCCCceEeeccCCCCCCCCCCCCcEEEEecCccCCccccccc
Q 042680 201 LPDGNVYVFAN-NRSVVHDPKANKIIREFPQLPGGARSYPATGTSVLLPLYLPRDTYKPVDAEVLICGGSVREGLYLGEE 279 (530)
Q Consensus 201 lp~G~lfv~Gg-~~~e~yDp~tn~w~~~~p~mp~~~r~yp~~g~svmlpl~~~~~~~~~~~gkI~v~GG~~~~~~~~~~~ 279 (530)
=-+|+|++.|+ +...+||-.+.+... ++|.+..+ ...+|-+ +...|.|++.|=.+ |
T Consensus 1175 Q~~G~Ll~tGd~r~IRIWDa~~E~~~~---diP~~s~t----~vTaLS~--------~~~~gn~i~AGfaD-G------- 1231 (1387)
T KOG1517|consen 1175 QQSGHLLVTGDVRSIRIWDAHKEQVVA---DIPYGSST----LVTALSA--------DLVHGNIIAAGFAD-G------- 1231 (1387)
T ss_pred hhCCeEEecCCeeEEEEEecccceeEe---ecccCCCc----cceeecc--------cccCCceEEEeecC-C-------
Confidence 34899999997 567899999887654 44532111 2222211 11367888887554 2
Q ss_pred cccccccCCcEEEEEcCCCC-----CcceecCCCCccccceeeeecCCeEEEEcCCCCCCCCcccCCCCCcccEEecCCC
Q 042680 280 EKRFVNALDDCARMVVTSPN-----PEWKIEKMPAPRTMADGVLLPNGEVLIINGADLGSGGWHCADKPSLKPMLYRPNA 354 (530)
Q Consensus 280 ~~~~~~a~~s~~~~dp~~~~-----~~W~~~~M~~~R~~~~~vvLpdG~VlViGG~~~g~~g~~~~~~p~~~~eiYDP~t 354 (530)
++-.||-.-+. ..|..-.=. ++.++-.+- +.|-.-++.|.+.| .++++|+..
T Consensus 1232 ---------svRvyD~R~a~~ds~v~~~R~h~~~-~~Iv~~slq-~~G~~elvSgs~~G------------~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1232 ---------SVRVYDRRMAPPDSLVCVYREHNDV-EPIVHLSLQ-RQGLGELVSGSQDG------------DIQLLDLRM 1288 (1387)
T ss_pred ---------ceEEeecccCCccccceeecccCCc-ccceeEEee-cCCCcceeeeccCC------------eEEEEeccc
Confidence 23445544321 233332111 114444333 45655555665533 578899887
Q ss_pred CCCCceEEecCCCCCCcccc---cceecCCCeEEEcCCC
Q 042680 355 PEGQRFAELAPTDIPRMYHS---VANLLPDGKVFVGGSN 390 (530)
Q Consensus 355 ~~g~~Wt~la~~~~~R~yHS---~a~LLpdGrVlv~GG~ 390 (530)
+.-..+ -.....|-|.| .-.+-.+..|+..|+.
T Consensus 1289 ~~~e~~---~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1289 SSKETF---LTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred Cccccc---ceeeeccccCccceeeeeccCCCeeeecCc
Confidence 511112 12233344432 2334568889998885
No 138
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=20.91 E-value=1.5e+03 Score=27.77 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=21.4
Q ss_pred cceE-EEecCCc-EEEEe--CceEEEEeCCCCeE
Q 042680 195 YPFV-YLLPDGN-VYVFA--NNRSVVHDPKANKI 224 (530)
Q Consensus 195 Yp~~-~llp~G~-lfv~G--g~~~e~yDp~tn~w 224 (530)
.|.. .+.++|+ |||.- ++...+||+.++..
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 4654 4557876 88874 46789999998764
No 139
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=20.31 E-value=90 Score=30.42 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcccccCCCCC-CCCcEEEc
Q 042680 10 QSLILLAAVLLLVNNAAAAPAGG-FLGSWELI 40 (530)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~w~~~ 40 (530)
+.+++|+++|+|++|+....... ....|..-
T Consensus 2 k~i~~l~l~lll~~C~~~~~~~~~~~~~W~~~ 33 (216)
T PF11153_consen 2 KKILLLLLLLLLTGCSTNPNEPLQPYFEWRFG 33 (216)
T ss_pred hHHHHHHHHHHHHhhcCCCccCCCCCCccEEE
Confidence 45566667888889988877532 35788874
Done!