BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042686
         (596 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
           Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
           Channel
          Length = 137

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 9/123 (7%)

Query: 428 GRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSK 487
           G   +R+V  F+N DE  LD +   LKP +F+E++ +++EGDP+N M F+++G+  + + 
Sbjct: 4   GSSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT 63

Query: 488 K------LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKAD 541
                   + ++ +  D C     EL+ WA +  S   LP S RTV+ALT+VEAF L AD
Sbjct: 64  DGGRSGFYNRSLLKEGDFCG---DELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIAD 120

Query: 542 DVK 544
           ++K
Sbjct: 121 ELK 123


>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
           Dependent Protein Kinase
 pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
           Dependent Protein Kinase
          Length = 283

 Score = 30.4 bits (67), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 424 KRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTW 483
           KR M  + L KV   ++ D++    +   L+PV F +   I+ +G+P +    +L+G   
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 206

Query: 484 AYSKK 488
              ++
Sbjct: 207 VLQRR 211


>pdb|1XZO|A Chain A, Identification Of A Disulfide Switch In Bssco, A Member Of
           The Sco Family Of Cytochrome C Oxidase Assembly Proteins
 pdb|1XZO|B Chain B, Identification Of A Disulfide Switch In Bssco, A Member Of
           The Sco Family Of Cytochrome C Oxidase Assembly Proteins
          Length = 174

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 396 REKLTNKHVDVRIDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWD 442
           ++KL  +++DVRI SF  D   D  K++K+      L     F NWD
Sbjct: 60  QKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPL----SFDNWD 102


>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
           Subunit Of Protein Kinase A That Represents The
           Inhibited State
          Length = 291

 Score = 30.0 bits (66), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 424 KRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTW 483
           KR M  + L KV   ++ D++    +   L+PV F +   I+ +G+P +    +L+G   
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 210

Query: 484 AYSKK 488
              ++
Sbjct: 211 VLQRR 215


>pdb|1ON4|A Chain A, Solution Structure Of Soluble Domain Of Sco1 From Bacillus
           Subtilis
          Length = 174

 Score = 30.0 bits (66), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 396 REKLTNKHVDVRIDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWD 442
           ++KL  +++DVRI SF  D   D  K++K+      L     F NWD
Sbjct: 60  QKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPL----SFDNWD 102


>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
 pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
 pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
          Length = 288

 Score = 30.0 bits (66), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 424 KRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTW 483
           KR M  + L KV   ++ D++    +   L+PV F +   I+ +G+P +    +L+G   
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 208

Query: 484 AYSKK 488
              ++
Sbjct: 209 VLQRR 213


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,783,790
Number of Sequences: 62578
Number of extensions: 674949
Number of successful extensions: 1693
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1683
Number of HSP's gapped (non-prelim): 20
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)