Query 042686
Match_columns 596
No_of_seqs 276 out of 2455
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 4E-87 8.8E-92 738.7 42.0 481 16-573 64-573 (727)
2 PLN03192 Voltage-dependent pot 100.0 3.9E-65 8.4E-70 594.3 45.5 441 15-561 47-499 (823)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 3.7E-62 7.9E-67 507.2 24.3 444 19-549 207-658 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 2.1E-59 4.6E-64 483.3 32.7 412 36-552 3-426 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.6E-54 3.5E-59 452.0 28.0 433 14-569 212-661 (815)
6 PRK09392 ftrB transcriptional 99.4 9.8E-13 2.1E-17 131.7 14.0 134 429-574 6-144 (236)
7 PF00520 Ion_trans: Ion transp 99.3 1.4E-11 3E-16 118.5 12.2 194 75-355 1-200 (200)
8 KOG1113 cAMP-dependent protein 99.3 5.4E-12 1.2E-16 127.8 8.9 105 429-545 121-225 (368)
9 PRK11753 DNA-binding transcrip 99.3 9.7E-11 2.1E-15 114.9 14.6 129 439-579 6-141 (211)
10 KOG0614 cGMP-dependent protein 99.2 4.3E-12 9.4E-17 133.6 4.9 111 423-545 147-257 (732)
11 cd00038 CAP_ED effector domain 99.2 8.5E-11 1.8E-15 102.0 11.9 106 437-554 1-112 (115)
12 KOG3713 Voltage-gated K+ chann 99.2 4.5E-10 9.7E-15 119.0 18.6 56 292-364 380-435 (477)
13 PF00027 cNMP_binding: Cyclic 99.2 1.7E-10 3.7E-15 96.6 9.2 85 455-551 1-91 (91)
14 COG0664 Crp cAMP-binding prote 99.1 6.7E-10 1.4E-14 108.2 14.3 127 433-571 3-135 (214)
15 PRK11161 fumarate/nitrate redu 99.1 4.9E-10 1.1E-14 112.0 13.0 131 432-575 15-152 (235)
16 KOG0614 cGMP-dependent protein 99.1 6.4E-11 1.4E-15 124.9 6.6 116 425-552 267-390 (732)
17 smart00100 cNMP Cyclic nucleot 99.1 8.1E-10 1.7E-14 96.3 11.7 104 437-552 1-112 (120)
18 PRK10402 DNA-binding transcrip 99.1 4.6E-10 1E-14 111.8 10.9 110 441-562 19-135 (226)
19 COG2905 Predicted signal-trans 99.0 1.7E-09 3.7E-14 115.9 13.4 128 429-568 6-140 (610)
20 PLN02868 acyl-CoA thioesterase 99.0 1.9E-09 4E-14 117.1 13.7 107 429-549 7-118 (413)
21 PRK09391 fixK transcriptional 98.9 9.6E-09 2.1E-13 102.6 11.7 118 448-580 33-156 (230)
22 KOG1545 Voltage-gated shaker-l 98.8 6.5E-09 1.4E-13 105.2 6.3 43 293-352 397-439 (507)
23 PF07885 Ion_trans_2: Ion chan 98.8 1.7E-08 3.7E-13 83.4 7.6 55 289-360 24-78 (79)
24 TIGR03697 NtcA_cyano global ni 98.8 3.8E-08 8.2E-13 95.0 10.6 84 461-554 1-90 (193)
25 KOG1113 cAMP-dependent protein 98.7 2.3E-08 5E-13 101.8 7.4 109 425-545 235-344 (368)
26 PRK13918 CRP/FNR family transc 98.6 3E-07 6.4E-12 89.6 12.6 80 452-544 5-91 (202)
27 KOG1419 Voltage-gated K+ chann 98.5 3E-06 6.4E-11 90.7 16.0 88 286-396 266-354 (654)
28 KOG1420 Ca2+-activated K+ chan 98.0 8.3E-06 1.8E-10 87.2 6.8 128 288-440 287-418 (1103)
29 PF08412 Ion_trans_N: Ion tran 98.0 8.6E-06 1.9E-10 66.2 4.8 35 18-52 35-69 (77)
30 PRK10537 voltage-gated potassi 97.9 0.00017 3.7E-09 77.5 14.9 53 290-359 169-221 (393)
31 KOG4390 Voltage-gated A-type K 97.9 2.4E-06 5.1E-11 87.6 -0.9 51 292-359 359-413 (632)
32 KOG2968 Predicted esterase of 97.8 2.6E-05 5.6E-10 87.7 5.8 119 444-574 499-624 (1158)
33 PF01007 IRK: Inward rectifier 97.4 0.00043 9.3E-09 72.7 8.1 56 289-361 84-141 (336)
34 KOG1418 Tandem pore domain K+ 97.0 0.0011 2.5E-08 71.5 6.0 58 290-364 116-173 (433)
35 KOG3827 Inward rectifier K+ ch 96.7 0.0079 1.7E-07 62.7 9.4 59 290-365 113-173 (400)
36 PRK11832 putative DNA-binding 96.6 0.034 7.5E-07 54.1 12.7 104 444-559 13-119 (207)
37 KOG3684 Ca2+-activated K+ chan 96.4 0.13 2.7E-06 55.1 15.9 58 286-360 284-341 (489)
38 KOG2968 Predicted esterase of 96.3 0.026 5.7E-07 64.4 11.2 99 448-552 110-215 (1158)
39 PF04831 Popeye: Popeye protei 96.0 0.17 3.6E-06 46.6 12.6 119 440-565 14-140 (153)
40 KOG4404 Tandem pore domain K+ 94.8 0.036 7.7E-07 56.7 4.8 58 290-364 187-252 (350)
41 KOG3542 cAMP-regulated guanine 93.7 0.11 2.3E-06 57.7 5.7 106 428-545 279-386 (1283)
42 KOG4404 Tandem pore domain K+ 93.4 0.031 6.6E-07 57.2 1.0 52 291-359 82-133 (350)
43 KOG2302 T-type voltage-gated C 93.1 8.3 0.00018 45.4 19.3 127 21-184 1106-1244(1956)
44 KOG3542 cAMP-regulated guanine 90.9 0.27 5.8E-06 54.7 4.4 92 430-541 37-128 (1283)
45 KOG1418 Tandem pore domain K+ 90.4 0.07 1.5E-06 57.5 -0.5 47 289-352 242-296 (433)
46 KOG3193 K+ channel subunit [In 89.9 0.23 4.9E-06 53.9 2.9 32 291-339 219-250 (1087)
47 KOG0498 K+-channel ERG and rel 84.7 22 0.00048 41.3 15.0 40 414-453 372-416 (727)
48 PLN03223 Polycystin cation cha 73.2 81 0.0018 39.1 15.0 65 24-92 1170-1234(1634)
49 KOG3676 Ca2+-permeable cation 72.1 45 0.00097 38.8 12.2 74 319-392 601-682 (782)
50 KOG2301 Voltage-gated Ca2+ cha 71.5 29 0.00064 43.9 11.5 22 72-93 873-894 (1592)
51 COG4709 Predicted membrane pro 70.1 13 0.00027 35.6 6.2 62 381-444 15-81 (195)
52 PLN03192 Voltage-dependent pot 68.9 2.2E+02 0.0048 34.0 18.0 41 413-453 327-371 (823)
53 PF07883 Cupin_2: Cupin domain 68.8 9.6 0.00021 29.6 4.6 45 456-501 3-48 (71)
54 PF14377 DUF4414: Domain of un 60.3 17 0.00037 31.6 4.9 44 381-426 51-105 (108)
55 KOG3609 Receptor-activated Ca2 54.0 4.1E+02 0.009 31.4 15.6 55 291-362 555-610 (822)
56 PF05899 Cupin_3: Protein of u 53.8 21 0.00046 28.7 4.1 41 459-501 15-55 (74)
57 KOG3614 Ca2+/Mg2+-permeable ca 52.3 5.7E+02 0.012 32.0 19.6 53 336-388 1019-1075(1381)
58 PRK13290 ectC L-ectoine syntha 51.5 79 0.0017 28.3 7.8 48 454-501 38-86 (125)
59 PF00520 Ion_trans: Ion transp 49.7 1.8E+02 0.004 26.7 10.7 18 284-301 136-153 (200)
60 PF08006 DUF1700: Protein of u 47.2 60 0.0013 30.9 6.8 44 382-427 16-64 (181)
61 PF00060 Lig_chan: Ligand-gate 40.0 46 0.001 29.8 4.6 60 286-363 41-100 (148)
62 COG1917 Uncharacterized conser 38.7 66 0.0014 28.6 5.3 48 453-501 45-93 (131)
63 PF14377 DUF4414: Domain of un 34.0 1.1E+02 0.0023 26.7 5.6 69 382-451 8-104 (108)
64 PRK09108 type III secretion sy 33.9 74 0.0016 33.9 5.5 69 326-394 172-242 (353)
65 PF07697 7TMR-HDED: 7TM-HD ext 33.1 44 0.00095 32.5 3.5 33 440-472 173-207 (222)
66 COG0662 {ManC} Mannose-6-phosp 32.5 1.3E+02 0.0028 26.8 6.1 49 451-500 36-85 (127)
67 PHA03029 hypothetical protein; 31.9 2.5E+02 0.0054 22.7 6.7 39 330-368 2-40 (92)
68 PRK05702 flhB flagellar biosyn 29.4 1E+02 0.0022 33.0 5.7 67 328-394 179-247 (359)
69 PRK12721 secretion system appa 28.5 1.1E+02 0.0023 32.7 5.6 66 329-394 173-240 (349)
70 PRK08156 type III secretion sy 28.5 1.1E+02 0.0023 32.8 5.6 64 331-394 170-235 (361)
71 PRK12468 flhB flagellar biosyn 28.0 1E+02 0.0023 33.2 5.5 18 377-394 230-247 (386)
72 TIGR00328 flhB flagellar biosy 26.1 1.3E+02 0.0028 32.1 5.7 63 332-394 176-240 (347)
73 TIGR03037 anthran_nbaC 3-hydro 26.0 2E+02 0.0043 27.0 6.2 63 465-545 43-108 (159)
74 PRK13726 conjugal transfer pil 24.8 6.3E+02 0.014 24.3 13.7 137 329-487 6-153 (188)
75 COG1377 FlhB Flagellar biosynt 24.5 1.9E+02 0.0041 30.9 6.5 24 372-395 223-248 (363)
76 PRK13109 flhB flagellar biosyn 24.2 1.4E+02 0.003 32.0 5.5 63 332-394 185-249 (358)
77 TIGR01404 FlhB_rel_III type II 23.9 1.5E+02 0.0031 31.6 5.6 63 332-394 175-239 (342)
78 smart00835 Cupin_1 Cupin. This 21.9 1.9E+02 0.0042 26.2 5.4 49 453-501 32-86 (146)
79 COG4792 EscU Type III secretor 21.6 5.7E+02 0.012 26.6 8.9 49 345-393 190-240 (349)
80 PHA02909 hypothetical protein; 21.5 55 0.0012 24.8 1.3 42 319-363 15-56 (72)
81 KOG2378 cAMP-regulated guanine 20.7 70 0.0015 34.8 2.4 41 496-548 1-43 (573)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4e-87 Score=738.65 Aligned_cols=481 Identities=31% Similarity=0.511 Sum_probs=425.4
Q ss_pred hcccceeCCCChhHHHHHHHHHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHHhhcccc
Q 042686 16 IRRIKKIKDKEYIDRLMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISHSKLH 95 (596)
Q Consensus 16 ~~~~~~I~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~ 95 (596)
.....+|+|+|++++.||.+++++++|+++++|++++||..+++.+| .|......++++|.++|++|++||+++|+||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 34445999999999999999999999999999999999999988888 8888888999999999999999999999999
Q ss_pred cccCcchhhhhhcccCCCccccChhHHhh----hhhhhhhhhccchhhhhhhhhhhccCC-CCCchhHHHHHHHHHHHHH
Q 042686 96 MEKGNQREKFKAIFKGEGEVPEDPMGRMR----KLFLIDCLAILPIPQVLVIFLVIFGIR-GPGFSTAMTFFVLQYSLRV 170 (596)
Q Consensus 96 y~~~~~~~~~~~~~~~~g~~V~d~~~Ia~----~~F~lDlls~lP~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~rl~Rl 170 (596)
|+++++ -++|.||++||. +||++|++|++|+++++. |.++.... ..+......++.++|++||
T Consensus 142 yv~~~s-----------~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~-~~~~~~~~~~~~~~~l~~il~~~rL~Rl 209 (727)
T KOG0498|consen 142 YVDPSS-----------YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVV-LVVIGSTSLALESTILVGILLLQRLPRL 209 (727)
T ss_pred EECCCC-----------ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhhee-eeeecccchhhhHHHHHHHHHHHHHHHH
Confidence 998743 279999999999 999999999999999987 54431000 0111123667889999999
Q ss_pred HHHHHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhhhcCCCCCCccccccCCCCCCC
Q 042686 171 IRTYFLFTHATRVSGILADATWAIFAFYLLLYLQSGHMFGALWYYYAIEKATECWREACKNHTGCSGHSYFSCNKSSRDY 250 (596)
Q Consensus 171 ~Rl~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~Wy~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 250 (596)
.|++++++++++..+++.+++|++.+++++.+++++||.||+||++|.++.++||.++
T Consensus 210 ~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~---------------------- 267 (727)
T KOG0498|consen 210 RRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA---------------------- 267 (727)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc----------------------
Confidence 9999999999999999999999998899999999999999999999999988887654
Q ss_pred ccccccccccCCCCCccccccchhhhccCccCCCChhHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCC
Q 042686 251 NFLNDFCRISTGSTTSYSFGIYNDALQSGIVGETDFPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSND 330 (596)
Q Consensus 251 sW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~ 330 (596)
+|+...+...+..+..|+||++ ++..+|++|+||+++|| ||+|||+++|+|
T Consensus 268 tw~~~l~~~~~~~~~~~~fg~~------------s~~~kY~~aLyw~l~tL-----------------stvG~g~~~s~~ 318 (727)
T KOG0498|consen 268 TWLGSLGRLLSCYNLSFTFGIY------------SLALKYVYALYWGLSTL-----------------STVGYGLVHANN 318 (727)
T ss_pred ccccccccccccCcccccccch------------hHHHHHHHHHHHHhhHh-----------------hhccCCccCCCC
Confidence 2332211000001223556644 45569999999999999 999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-cc-cccCCCHhHHHHHHHHHHHHH-hcCCCCCc
Q 042686 331 VGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK-HY-ADISRDQNVRGQFKKAKREKL-TNKHVDVR 407 (596)
Q Consensus 331 ~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~-~~-~~~~lp~~L~~rv~~y~~~~~-~~~~~~~~ 407 (596)
..|++|+|++|++|.++||++||||+++|++.+.+.++++.|++++ +| ++++||++||+||++|++|+| .++|+ |
T Consensus 319 ~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gv--d 396 (727)
T KOG0498|consen 319 MGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGV--D 396 (727)
T ss_pred cHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCc--C
Confidence 9999999999999999999999999999999999999999999999 99 999999999999999999999 77999 9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeee
Q 042686 408 IDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSK 487 (596)
Q Consensus 408 e~~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~ 487 (596)
|+++|++||..||.+|++|+|.+.++++|+|+++|++++++|+.++++..|+|||+|++|||+.++||||.+|.+++...
T Consensus 397 ee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~ 476 (727)
T KOG0498|consen 397 EEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITT 476 (727)
T ss_pred HHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c----ceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch-hH-------
Q 042686 488 K----LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV-SK------- 554 (596)
Q Consensus 488 ~----~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~-~k------- 554 (596)
+ .....+++||+|| ||+..|++. . |+++||+|+|.|+++.|+++||++ +++||++ ++
T Consensus 477 ~~g~~~~~~~L~~Gd~~G---eEl~~~~~~--~-----p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r 546 (727)
T KOG0498|consen 477 DGGGFFVVAILGPGDFFG---EELLTWCLD--L-----PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFR 546 (727)
T ss_pred cCCceEEEEEecCCCccc---hHHHHHHhc--C-----CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHH
Confidence 6 5678889999999 999766653 2 669999999999999999999999 9999876 11
Q ss_pred --------HHHHHHHHHHHHHHhhhhc
Q 042686 555 --------EAAALIQLVWRFKKHKRAN 573 (596)
Q Consensus 555 --------~~~~~~q~~~~~~~~r~~~ 573 (596)
|++..+|..|+++.+|+..
T Consensus 547 ~~s~~~r~~aa~~iq~a~r~~~~~~~~ 573 (727)
T KOG0498|consen 547 YYSHLWRTWAACFIQAAWRRHIKRKGE 573 (727)
T ss_pred HhhhhhhhhhhhhHHHHHHHHHHhhcc
Confidence 9999999999999998743
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=3.9e-65 Score=594.28 Aligned_cols=441 Identities=15% Similarity=0.142 Sum_probs=366.9
Q ss_pred hhcccceeCCCChhHHHHHHHHHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHHhhccc
Q 042686 15 AIRRIKKIKDKEYIDRLMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISHSKL 94 (596)
Q Consensus 15 ~~~~~~~I~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~l~f~t 94 (596)
...+..+|+|+|+++++||.+++++++|+++++|++++|. +......+.++|.++|++|++||+++|+|
T Consensus 47 ~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~-----------~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ 115 (823)
T PLN03192 47 IGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFL-----------NASPKRGLEIADNVVDLFFAVDIVLTFFV 115 (823)
T ss_pred cccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHee-----------CCCCCCCeeeHHHHHHHHHHHHHHhheeE
Confidence 3466679999999999999999999999999999984331 11122357889999999999999999999
Q ss_pred ccccCcchhhhhhcccCCCccccChhHHhh----hhhhhhhhhccchhhhhhhhhhhccCCCCCchhHHHHHHHHHHHHH
Q 042686 95 HMEKGNQREKFKAIFKGEGEVPEDPMGRMR----KLFLIDCLAILPIPQVLVIFLVIFGIRGPGFSTAMTFFVLQYSLRV 170 (596)
Q Consensus 95 ~y~~~~~~~~~~~~~~~~g~~V~d~~~Ia~----~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rl~Rl 170 (596)
||+++ ++|.+|.||++|++ +||++|++|++|++.+.. +++.. ........+++++|++|+
T Consensus 116 ay~d~-----------~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~---~~~~~--~~~~~~~~~l~llrl~Rl 179 (823)
T PLN03192 116 AYIDP-----------RTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAY---LITGT--VKLNLSYSLLGLLRFWRL 179 (823)
T ss_pred EEEeC-----------CCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHH---HhcCC--ccchHHHHHHHHHHHHHH
Confidence 99964 46789999999998 999999999999997754 22211 111112233455555566
Q ss_pred HHHHHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhhhcCCCCCCccccccCCCCCCC
Q 042686 171 IRTYFLFTHATRVSGILADATWAIFAFYLLLYLQSGHMFGALWYYYAIEKATECWREACKNHTGCSGHSYFSCNKSSRDY 250 (596)
Q Consensus 171 ~Rl~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~Wy~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 250 (596)
.|+.++++++++...+ ...+++++++++.+++++||+||+||+++.. + ...+.
T Consensus 180 ~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~--------------------~-----~~~~~ 232 (823)
T PLN03192 180 RRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADR--------------------Y-----PHQGK 232 (823)
T ss_pred HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------c-----CCCCC
Confidence 6666666665543221 2235577888888888999999999998731 0 11346
Q ss_pred ccccccccccCCCCCccccccchhhhccCccCCCChhHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCC
Q 042686 251 NFLNDFCRISTGSTTSYSFGIYNDALQSGIVGETDFPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSND 330 (596)
Q Consensus 251 sW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~ 330 (596)
+|+..... + ..+.+++.+|++|+|||++|| |||||||++|.|
T Consensus 233 ~Wi~~~~~-------------------~--~~~~s~~~~Yi~slYwai~Tm-----------------tTVGYGDi~p~t 274 (823)
T PLN03192 233 TWIGAVIP-------------------N--FRETSLWIRYISAIYWSITTM-----------------TTVGYGDLHAVN 274 (823)
T ss_pred chHHHhhh-------------------c--cccCcHHHHHHHHHHHHHHHH-----------------hhccCCCcCCCc
Confidence 88864211 0 226789999999999999999 999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-cc-cccCCCHhHHHHHHHHHHHHHhcCCCCCcH
Q 042686 331 VGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK-HY-ADISRDQNVRGQFKKAKREKLTNKHVDVRI 408 (596)
Q Consensus 331 ~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~-~~-~~~~lp~~L~~rv~~y~~~~~~~~~~~~~e 408 (596)
..|++|++++|++|+++|||++|+|++++.+.+++.++++++++.+ +| +++++|++||+||++|++++|+.++. ++
T Consensus 275 ~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~--~~ 352 (823)
T PLN03192 275 TIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESL--NQ 352 (823)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccc--cH
Confidence 9999999999999999999999999999999999999999999999 99 99999999999999999999966666 89
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec
Q 042686 409 DSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK 488 (596)
Q Consensus 409 ~~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~ 488 (596)
+++++.||++||.++..+++.+.++++++|++++++++.+++..++++.|+|||.|+.+||.++++|||.+|+|++...+
T Consensus 353 ~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~ 432 (823)
T PLN03192 353 QQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSE 432 (823)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997632
Q ss_pred ----ceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH-HHHHHHH
Q 042686 489 ----LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK-EAAALIQ 561 (596)
Q Consensus 489 ----~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k-~~~~~~q 561 (596)
..+..+++|++|| |. +++.+. |+++|++|.++|+++.|++++|.+ ..++|+..+ ..+.+.|
T Consensus 433 ~~~e~~l~~l~~Gd~FG----E~---~~l~~~-----p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~ 499 (823)
T PLN03192 433 GEKERVVGTLGCGDIFG----EV---GALCCR-----PQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQ 499 (823)
T ss_pred CCcceeeEEccCCCEec----ch---HHhcCC-----CCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456789999999 57 777776 899999999999999999999999 999998733 4444443
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-62 Score=507.18 Aligned_cols=444 Identities=17% Similarity=0.235 Sum_probs=361.1
Q ss_pred cceeCCCChhHHHHHHHHHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHHhhccccccc
Q 042686 19 IKKIKDKEYIDRLMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISHSKLHMEK 98 (596)
Q Consensus 19 ~~~I~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~y~~ 98 (596)
+++|..++.|+..||.+++++.+|+++++|+.+.|-.. ......|.++|.++|++|++||++||+|.|+.
T Consensus 207 PHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk----------~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVG 276 (971)
T KOG0501|consen 207 PHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNK----------QRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVG 276 (971)
T ss_pred CeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccc----------ccCceeEEEecchhhhhhhhhhhhhcceeeec
Confidence 45788999999999999999999999999999433211 11235789999999999999999999999997
Q ss_pred CcchhhhhhcccCCCccccChhHHhh----hhhhhhhhhccchhhhhhhhhhhccCCCCCchhHHHHHHHHHHHHHHHHH
Q 042686 99 GNQREKFKAIFKGEGEVPEDPMGRMR----KLFLIDCLAILPIPQVLVIFLVIFGIRGPGFSTAMTFFVLQYSLRVIRTY 174 (596)
Q Consensus 99 ~~~~~~~~~~~~~~g~~V~d~~~Ia~----~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rl~Rl~Rl~ 174 (596)
| .||+|.||+.|++ +||++|++||+|+|.+.. + .+.. .+.... +..+|+.|++
T Consensus 277 P------------gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~na-F---~~~d-egI~SL------FSaLKVVRLL 333 (971)
T KOG0501|consen 277 P------------GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNA-F---ERDD-EGIGSL------FSALKVVRLL 333 (971)
T ss_pred C------------CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHH-h---hccc-ccHHHH------HHHHHHHHHH
Confidence 5 7899999999999 999999999999998765 2 1111 111111 1223333333
Q ss_pred HhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhhhcCCCCCCccccccCCCCCCCcccc
Q 042686 175 FLFTHATRVSGILADATWAIFAFYLLLYLQSGHMFGALWYYYAIEKATECWREACKNHTGCSGHSYFSCNKSSRDYNFLN 254 (596)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~Wy~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~sW~~ 254 (596)
||-+..++..+|+...+- .++.+++.+.+++||+||+||.+|-... ..-..+....+||+.
T Consensus 334 RLGRVaRKLD~YlEYGAA-~LvLLlC~y~lvAHWlACiWysIGd~ev------------------~~~~~n~i~~dsWL~ 394 (971)
T KOG0501|consen 334 RLGRVARKLDHYLEYGAA-VLVLLLCVYGLVAHWLACIWYSIGDYEV------------------RDEMDNTIQPDSWLW 394 (971)
T ss_pred HHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHhheeccchhe------------------ecccccccccchHHH
Confidence 333333333344433322 4566777889999999999999985331 111222346678987
Q ss_pred ccccccCCCCCccccccchhhhccCccCCCChhHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHH
Q 042686 255 DFCRISTGSTTSYSFGIYNDALQSGIVGETDFPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGEN 334 (596)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~ 334 (596)
..... .++.|+|..... -..++.+|..+.|+.|+||.++.| ||||+|.+.|.|..|+
T Consensus 395 kLa~~---~~tpY~~~~s~~---~~~~gGPSr~S~YissLYfTMt~m-----------------ttvGFGNiA~~TD~EK 451 (971)
T KOG0501|consen 395 KLAND---IGTPYNYNLSNK---GTLVGGPSRTSAYISSLYFTMTCM-----------------TTVGFGNIAPNTDNEK 451 (971)
T ss_pred HHHhh---cCCCceeccCCC---ceeecCCcccceehhhhhhhhhhh-----------------hcccccccCCCccHHH
Confidence 64321 234444431110 012457788889999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-cc-cccCCCHhHHHHHHHHHHHHH-hcCCCCCcHHHH
Q 042686 335 IFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK-HY-ADISRDQNVRGQFKKAKREKL-TNKHVDVRIDSF 411 (596)
Q Consensus 335 ~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~-~~-~~~~lp~~L~~rv~~y~~~~~-~~~~~~~~e~~i 411 (596)
+|++++|++|.++||.++|++++|++++.+...+|++-++.+ +| +-..+|+.|.+||.+|.--.| ..+|+ |.+++
T Consensus 452 iF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGi--DTeKV 529 (971)
T KOG0501|consen 452 IFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGI--DTEKV 529 (971)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCc--CHHHH
Confidence 999999999999999999999999999999999999999999 99 999999999999999999999 99999 99999
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeeccee
Q 042686 412 ISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSI 491 (596)
Q Consensus 412 l~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~ 491 (596)
|.-.|.++|.+|..|++++..+..|.|+-.++..++.|+..++.....|||.|++.||..+.++||.+|.++|...++++
T Consensus 530 L~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEVV 609 (971)
T KOG0501|consen 530 LGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEVV 609 (971)
T ss_pred hhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcC
Q 042686 492 TIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLF 549 (596)
Q Consensus 492 ~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f 549 (596)
.++++||+|| ++.+ --. . +..+.++|+|+|+|++..|.++.+.+ +.-|
T Consensus 610 AILGKGDVFG---D~FW--K~~--t---~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFY 658 (971)
T KOG0501|consen 610 AILGKGDVFG---DEFW--KEN--T---LGQSAANVRALTYCDLHMIKRDKLLKVLDFY 658 (971)
T ss_pred EEeecCccch---hHHh--hhh--h---hhhhhhhhhhhhhhhhhHHhHHHHHHHHHHH
Confidence 9999999999 7552 111 1 12677999999999999999999988 5444
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-59 Score=483.30 Aligned_cols=412 Identities=17% Similarity=0.179 Sum_probs=338.6
Q ss_pred HHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHHhhcccccccCcchhhhhhcccCCCcc
Q 042686 36 AMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISHSKLHMEKGNQREKFKAIFKGEGEV 115 (596)
Q Consensus 36 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~g~~ 115 (596)
+.+.++|++++++.++.|+.+.. .....|..+|++.|++|++|+++++||||. ++|.+
T Consensus 3 vs~~vLYN~~~li~r~~F~di~~---------~y~~~wl~ld~~~D~vyllDi~v~~R~gyl-------------eqGll 60 (536)
T KOG0500|consen 3 VSLGVLYNMIVLIVRAAFDDIQS---------SYLENWLPLDYLFDFVYLLDIIVRSRTGYL-------------EQGLL 60 (536)
T ss_pred EEEehHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------------hcCee
Confidence 34567899999998755544321 113468999999999999999999999999 69999
Q ss_pred ccChhHHhh-----hhhhhhhhhccchhhhhhhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhh
Q 042686 116 PEDPMGRMR-----KLFLIDCLAILPIPQVLVIFLVIFGIRGPGFSTAMTFFVLQYSLRVIRTYFLFTHATRVSGILADA 190 (596)
Q Consensus 116 V~d~~~Ia~-----~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rl~Rl~Rl~~l~~~~~~~~~~~~~~ 190 (596)
|.|-.+.++ ..|.+|++|.+|+|++.. + .++ .. +.++.|++|+.|+...+.+-+..+. .++
T Consensus 61 V~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~-~------~~~--~~---~~r~nRllk~yRl~~F~~rTetrT~--~Pn 126 (536)
T KOG0500|consen 61 VKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLF-K------DGS--AS---LERLNRLLKIYRLFEFFDRTETRTT--YPN 126 (536)
T ss_pred ehhhHHHHHHHHHhhhhhhhhhhhcchhHHhh-c------CCc--ch---HHHHHHHHHHHHHHHHHHHhccccC--Cch
Confidence 999999988 789999999999998876 2 111 11 1334566666666665555444333 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhhhcCCCCCCccccccCCCCCCCccccccccccCCCCCccccc
Q 042686 191 TWAIFAFYLLLYLQSGHMFGALWYYYAIEKATECWREACKNHTGCSGHSYFSCNKSSRDYNFLNDFCRISTGSTTSYSFG 270 (596)
Q Consensus 191 ~~~~~~~~ll~~~l~~H~~ac~Wy~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~ 270 (596)
++ ++.++....+++.||.||++|+++. +.. ....+|....-. ++. ++
T Consensus 127 ~f-ri~~lv~~~~ilfHWNaClYf~iS~---------------------~~g----~~~d~wvY~~i~-----d~~--~~ 173 (536)
T KOG0500|consen 127 AF-RISKLVHYCLILFHWNACLYFLISK---------------------AIG----FTTDDWVYPKIN-----DPE--FA 173 (536)
T ss_pred HH-HHHHHHHHHHHHHHHhhHHHHhhhH---------------------hcC----ccccccccCCcc-----Ccc--cc
Confidence 55 7777877888899999999998874 121 134457754210 000 00
Q ss_pred cchhhhccCccCCCChhHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 042686 271 IYNDALQSGIVGETDFPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVF 350 (596)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~ 350 (596)
. .....+..+|+.|+||+..|| ||+|- -.+|.+..|..|.|+-.++|+++||.
T Consensus 174 ---~------c~~~n~~ReY~~S~YWStLTl-----------------TTiGe-~P~P~t~~ey~F~I~d~LiGvliFAt 226 (536)
T KOG0500|consen 174 ---T------CDAGNLTREYLYSLYWSTLTL-----------------TTIGE-QPPPVTSSEYAFVIVDTLIGVLIFAT 226 (536)
T ss_pred ---c------cchhHHHHHHHHHHHHHhhhh-----------------hhccC-CCCCCcCchhhHHHHHHHHHHHHHhh
Confidence 0 012348899999999999999 99995 67899999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhc-cc-cccCCCHhHHHHHHHHHHHHH-hcCCCCCcHHHHHHhcCHHHHHHHHHHH
Q 042686 351 LIGRMQTEIARSQKINQKWQVIRQSK-HY-ADISRDQNVRGQFKKAKREKL-TNKHVDVRIDSFISDLSLDAEKEVKRHM 427 (596)
Q Consensus 351 iig~i~~~i~~~~~~~~~~~~~~~~~-~~-~~~~lp~~L~~rv~~y~~~~~-~~~~~~~~e~~il~~Lp~~Lr~~i~~~l 427 (596)
|+|+++++++++++...++|++|+.+ +| +.+++|++||.||.+||+|.| +++-. ||+++++.||+.|+.+|+.++
T Consensus 227 IvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~--DEeevl~~LP~kL~aeIA~nv 304 (536)
T KOG0500|consen 227 IVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIV--DEEEVLKLLPDKLKAEIAINV 304 (536)
T ss_pred hhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccc--cHHHHHHhCCHHHHhHhHHHH
Confidence 99999999999999999999999999 99 999999999999999999999 55555 999999999999999999999
Q ss_pred HHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec--ceeeecCCCCeecCCch
Q 042686 428 GRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK--LSITIQRHQDHCDVRRK 505 (596)
Q Consensus 428 ~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~--~~~~~~~~G~~FG~~~e 505 (596)
+.+.|+++++|+++++.++.+++..++++.|.|||+|+++||.+.+||+|.+|+++|..++ .+...+.+|++||
T Consensus 305 h~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FG---- 380 (536)
T KOG0500|consen 305 HLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVFG---- 380 (536)
T ss_pred HHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEEEEEecCCceee----
Confidence 9999999999999999999999999999999999999999999999999999999998876 5667889999999
Q ss_pred hhhhHhhccc-cccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 506 ELIDWAKNEN-SYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 506 el~~~al~~~-~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
|+ +++.- +.-....|+++|+.+.++++++|+++|+.+ +.+||+-
T Consensus 381 Ei---sIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a 426 (536)
T KOG0500|consen 381 EI---SILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDA 426 (536)
T ss_pred ee---EEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHH
Confidence 57 55422 212233899999999999999999999999 9999964
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-54 Score=452.03 Aligned_cols=433 Identities=14% Similarity=0.175 Sum_probs=361.6
Q ss_pred HhhcccceeCCCC-hhHHHHHHHHHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHH-hh
Q 042686 14 RAIRRIKKIKDKE-YIDRLMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFI-SH 91 (596)
Q Consensus 14 ~~~~~~~~I~P~s-~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~-l~ 91 (596)
..++-...|+|.. ++...|-.++.+...|++|++|++..||+...++ ...|.+.|+++|+++++||+ ++
T Consensus 212 ~~~~~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q 282 (815)
T KOG0499|consen 212 KRIKLPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQ 282 (815)
T ss_pred hhcCCCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhh
Confidence 3445556899986 9999999999999999999999998888875432 23599999999999999998 78
Q ss_pred cccccccCcchhhhhhcccCCCccccChhHHhh-----hhhhhhhhhccchhhhhhhhhhhccCCCCCchhHHHHHHHHH
Q 042686 92 SKLHMEKGNQREKFKAIFKGEGEVPEDPMGRMR-----KLFLIDCLAILPIPQVLVIFLVIFGIRGPGFSTAMTFFVLQY 166 (596)
Q Consensus 92 f~t~y~~~~~~~~~~~~~~~~g~~V~d~~~Ia~-----~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 166 (596)
-|+.|+ ..|.+|.|.+..++ ..|-+|++|++|+|++.. .+. .+- +.|
T Consensus 283 ~Rl~fv-------------rgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~---~~G------~~p------~wR 334 (815)
T KOG0499|consen 283 PRLQFV-------------RGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYL---FFG------FNP------MWR 334 (815)
T ss_pred hhheee-------------eCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHH---Hhc------cch------hhh
Confidence 889998 58999999999888 789999999999998876 111 111 225
Q ss_pred HHHHHHHHH---hHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhhhcCCCCCCcccccc
Q 042686 167 SLRVIRTYF---LFTHATRVSGILADATWAIFAFYLLLYLQSGHMFGALWYYYAIEKATECWREACKNHTGCSGHSYFSC 243 (596)
Q Consensus 167 l~Rl~Rl~~---l~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~Wy~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 243 (596)
++|++++.. +++.+++ ++......|.++.+-.++++.|+.+|.+|+.+-+.
T Consensus 335 ~~R~lK~~sF~e~~~~Le~---i~s~~y~~RV~rT~~YmlyilHinacvYY~~Sayq----------------------- 388 (815)
T KOG0499|consen 335 ANRMLKYTSFFEFNHHLES---IMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQ----------------------- 388 (815)
T ss_pred hhhHHHHHHHHHHHHHHHH---HhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc-----------------------
Confidence 555555544 4444443 34444444666666666778899999999766421
Q ss_pred CCCCCCCccccccccccCCCCCccccccchhhhccCccCCCChhHHHHHHHHHHHhhhhhhHHHHHHhhhhccccccccc
Q 042686 244 NKSSRDYNFLNDFCRISTGSTTSYSFGIYNDALQSGIVGETDFPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQ 323 (596)
Q Consensus 244 ~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGy 323 (596)
+.+...|+.+. -+..|++|+|||+.|+ ||+|
T Consensus 389 --glG~~rWVydg-----------------------------~Gn~YiRCyyfa~kt~-----------------~tiG- 419 (815)
T KOG0499|consen 389 --GLGTTRWVYDG-----------------------------EGNEYIRCYYFAVKTL-----------------ITIG- 419 (815)
T ss_pred --ccccceeEEcC-----------------------------CCCceeeehhhHHHHH-----------------HHhc-
Confidence 12345666421 2345999999999999 9999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc-cc-cccCCCHhHHHHHHHHHHHHH-h
Q 042686 324 NLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK-HY-ADISRDQNVRGQFKKAKREKL-T 400 (596)
Q Consensus 324 gdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~-~~-~~~~lp~~L~~rv~~y~~~~~-~ 400 (596)
|...|+|..|++|..+.-+.|+++||.+||+|-.++.+.+...++|+..|++. .| +..++|.+.|+||+.+|+|.| +
T Consensus 420 ~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~s 499 (815)
T KOG0499|consen 420 GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDS 499 (815)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhh
Confidence 78899999999999999999999999999999999999999999999999998 99 999999999999999999999 7
Q ss_pred cCCCCCcHHHHHHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEee
Q 042686 401 NKHVDVRIDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQG 480 (596)
Q Consensus 401 ~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G 480 (596)
++.. ||.++|..||..||.+++..++...+.++.+|++|+...+..++..++...|.|||.|+++||.+.+||+|..|
T Consensus 500 Qr~L--DEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~G 577 (815)
T KOG0499|consen 500 QRML--DESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHG 577 (815)
T ss_pred hccc--cHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecc
Confidence 7777 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeec---ceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHH
Q 042686 481 KTWAYSKK---LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEA 556 (596)
Q Consensus 481 ~v~v~~~~---~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~ 556 (596)
+|+|..+. .+..++.+|++|| |+ +++.-..+ ..|+++|+|.+.|.+++|+++|+++ +.+||+-.+.-
T Consensus 578 qvQVlGGp~~~~Vl~tL~~GsVFG----EI---SLLaigG~--nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iL 648 (815)
T KOG0499|consen 578 QVQVLGGPDGTKVLVTLKAGSVFG----EI---SLLAIGGG--NRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRIL 648 (815)
T ss_pred eEEEecCCCCCEEEEEecccceee----ee---eeeeecCC--CccchhhhhcccceeeEecHhHHHHHHHhCccHHHHH
Confidence 99998864 5678899999999 67 55533222 2899999999999999999999999 99999877666
Q ss_pred HHHHHHHHHHHHh
Q 042686 557 AALIQLVWRFKKH 569 (596)
Q Consensus 557 ~~~~q~~~~~~~~ 569 (596)
++.+-.+.+...+
T Consensus 649 rkkAr~llk~nak 661 (815)
T KOG0499|consen 649 RKKARVLLKQNAK 661 (815)
T ss_pred HHHHHHHHHhccc
Confidence 6655555554333
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.45 E-value=9.8e-13 Score=131.71 Aligned_cols=134 Identities=17% Similarity=0.117 Sum_probs=110.0
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec----ceeeecCCCCeecCCc
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK----LSITIQRHQDHCDVRR 504 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~----~~~~~~~~G~~FG~~~ 504 (596)
.+.++..++|++++++.++.+....+.+.|++|++|+++||.++.+|+|.+|.++++... ..+...++|++||
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g--- 82 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI--- 82 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh---
Confidence 457899999999999999999999999999999999999999999999999999997532 3345569999999
Q ss_pred hhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhhcc
Q 042686 505 KELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRAND 574 (596)
Q Consensus 505 eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~~~ 574 (596)
+. +++.+. ++.++++|.++|+++.+++++|.. ..+.|.+.+.........++...++..+.
T Consensus 83 -~~---~~~~~~-----~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~~~ 144 (236)
T PRK09392 83 -LA---AVVLDA-----PYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSLKNQ 144 (236)
T ss_pred -hH---HHhCCC-----CCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56 666666 889999999999999999999999 99999986544333333344444444333
No 7
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.31 E-value=1.4e-11 Score=118.51 Aligned_cols=194 Identities=13% Similarity=0.153 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHHhhcccccccCcchhhhhhcccCCCccccChhHHhhhhhhhhhhhccchhhhhhhhhhhccCCCCC
Q 042686 75 VIRSVLDFLKLGHFISHSKLHMEKGNQREKFKAIFKGEGEVPEDPMGRMRKLFLIDCLAILPIPQVLVIFLVIFGIRGPG 154 (596)
Q Consensus 75 ~~~~~~D~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~g~~V~d~~~Ia~~~F~lDlls~lP~~~l~~~~~~~~~~~~~~ 154 (596)
.+|.+.|++|.+|+++++..... .+.+...+ .|.++|+++++|...... .+.....+
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-------------~~~~y~~~------~~~~~d~~~~~~~~~~~~----~~~~~~~~ 57 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-------------KRRRYFRS------WWNWFDFISVIPSIVSVI----LRSYGSAS 57 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-------------G-GCCCCS------HHHHHHHHHHHHHCCHHC----CHCSS--H
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-------------HHHHHhcC------hhhccccccccccccccc----cccccccc
Confidence 36889999999999999997554 10111111 888999999999964433 11111110
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhhhcCCC
Q 042686 155 FSTAMTFFVLQYSLRVIRTYFLFTHATRVSGILADATWAIFAFYLLLYLQSGHMFGALWYYYAIEKATECWREACKNHTG 234 (596)
Q Consensus 155 ~~~~~~~~~~~rl~Rl~Rl~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~Wy~~~~~~~~~~~~~~~~~~~~ 234 (596)
......+.+.+|++|++|+.+..+.+++....+.. ....+.+.++.+++..|..||+|+.+.......|
T Consensus 58 ~~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~---------- 126 (200)
T PF00520_consen 58 AQSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALIR-SFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSC---------- 126 (200)
T ss_dssp HCHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------------
T ss_pred ccceEEEEEeecccccccccccccccccccccccc-ccccccccccccccccccccchhheecccccccc----------
Confidence 01122334455555555555555544443332332 2225566666777888999999987653221111
Q ss_pred CCCccccccCCCCCCCccccccccccCCCCCccccccchhhhccCccCCCChhHHHHHHHHHHHhhhhhhHHHHHHhhhh
Q 042686 235 CSGHSYFSCNKSSRDYNFLNDFCRISTGSTTSYSFGIYNDALQSGIVGETDFPKKLIRCLRWGLQNLRFAVFYMAWIMIT 314 (596)
Q Consensus 235 C~~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tl~~~~~~~~~~~~~ 314 (596)
|. .++-...+ ....+..+.|..|+||+++++
T Consensus 127 ~~-------------~~~~~~~~-----------------------~~~~~~f~~~~~s~~~~~~~~------------- 157 (200)
T PF00520_consen 127 CD-------------PTWDSEND-----------------------IYGYENFDSFGESLYWLFQTM------------- 157 (200)
T ss_dssp -----------------SS---------------------------SSTHHHHSSHHHHHHHHHHHH-------------
T ss_pred cc-------------cccccccc-----------------------ccccccccccccccccccccc-------------
Confidence 00 00000000 012334567999999999999
Q ss_pred cccccccccCCCCCC-----ChhHHHHH-HHHHHHHHHHHHHHHHHH
Q 042686 315 VHVISAFGQNLETSN-----DVGENIFA-ICMTNYGVVLFVFLIGRM 355 (596)
Q Consensus 315 ~~~~ttvGygdi~p~-----~~~E~~f~-i~~mi~G~~~fa~iig~i 355 (596)
|+.|+||..+. +..+.++. ++..+++.++++.++|.|
T Consensus 158 ----t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 158 ----TGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp ----TTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999887 88999998 667777778889888865
No 8
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=5.4e-12 Score=127.76 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=100.0
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhhh
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKELI 508 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel~ 508 (596)
.+.+++.-+|++++++.+.++.+.|.++.+++|+.|+++||.++.+|+|.+|+++|+..+.-+...++|..|| |+
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~~v~~~~~g~sFG----El- 195 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGTYVTTYSPGGSFG----EL- 195 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCeEEeeeCCCCchh----hh-
Confidence 4567788899999999999999999999999999999999999999999999999999998889999999999 69
Q ss_pred hHhhccccccCCCCcccEEEEeceEEEEEechHhHhh
Q 042686 509 DWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC 545 (596)
Q Consensus 509 ~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~ 545 (596)
|+..+. ||.+||.|.+++.+|.|++..|..
T Consensus 196 --ALmyn~-----PRaATv~a~t~~klWgldr~SFrr 225 (368)
T KOG1113|consen 196 --ALMYNP-----PRAATVVAKSLKKLWGLDRTSFRR 225 (368)
T ss_pred --HhhhCC-----CcccceeeccccceEEEeeceeEE
Confidence 999998 999999999999999999999887
No 9
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.25 E-value=9.7e-11 Score=114.94 Aligned_cols=129 Identities=12% Similarity=0.155 Sum_probs=101.3
Q ss_pred ccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhHhhc
Q 042686 439 QNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDWAKN 513 (596)
Q Consensus 439 ~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~al~ 513 (596)
+.++++.++.++..++.+.|++|++|+.+|++.+.+|+|.+|.++++..+ ......++|++|| +. +++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g----~~---~~~ 78 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIG----EL---GLF 78 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEe----eh---hhc
Confidence 46899999999999999999999999999999999999999999987542 2345569999999 45 454
Q ss_pred cccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchh-HHHHHHHHHHHHHHHhhhhccccCCC
Q 042686 514 ENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVS-KEAAALIQLVWRFKKHKRANDKNAKP 579 (596)
Q Consensus 514 ~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~-k~~~~~~q~~~~~~~~r~~~~~~~~~ 579 (596)
.+. ++++++++|.++|+++.+++++|.+ +.+.|++. .+.+.+.+... ...++..+....++
T Consensus 79 ~~~----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ 141 (211)
T PRK11753 79 EEG----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQ-NTSRKVGDLAFLDV 141 (211)
T ss_pred cCC----CCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCh
Confidence 432 1577899999999999999999999 99999984 45666665553 33344444444444
No 10
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.25 E-value=4.3e-12 Score=133.60 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=105.2
Q ss_pred HHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecC
Q 042686 423 VKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDV 502 (596)
Q Consensus 423 i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~ 502 (596)
-..++.++.+++..++++++..++.+++.+|.++.|.+|..|++|||+++++|.+.+|+++|.++++.+...++|..||
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~ll~~m~~gtvFG- 225 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGKLLGKMGAGTVFG- 225 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCeeeeccCCchhhh-
Confidence 3456678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh
Q 042686 503 RRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC 545 (596)
Q Consensus 503 ~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~ 545 (596)
|+ |++.++ +|+++|+|+++|.+|.|+++-|..
T Consensus 226 ---EL---AILync-----tRtAsV~alt~~~lWaidR~vFq~ 257 (732)
T KOG0614|consen 226 ---EL---AILYNC-----TRTASVRALTDVRLWAIDREVFQA 257 (732)
T ss_pred ---HH---HHHhCC-----cchhhhhhhhhhhHHHHHHHHHHH
Confidence 69 999999 999999999999999999999987
No 11
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.24 E-value=8.5e-11 Score=102.02 Aligned_cols=106 Identities=29% Similarity=0.365 Sum_probs=91.9
Q ss_pred hhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhHh
Q 042686 437 EFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDWA 511 (596)
Q Consensus 437 lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~a 511 (596)
+|++++++.+..+...++.+.+.+|++|+.+|+..+.+|+|.+|.+.+...+ .......+|++|| +. +
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g----~~---~ 73 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFG----EL---A 73 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcC----hH---H
Confidence 4788999999999999999999999999999999999999999999997754 3345569999999 44 4
Q ss_pred hccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH
Q 042686 512 KNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 512 l~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k 554 (596)
+..+. ++..+++|.++|.++.+++++|.. ..+.|.+.+
T Consensus 74 ~~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 74 LLGNG-----PRSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred HhcCC-----CCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 44444 788999999999999999999999 888887643
No 12
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.22 E-value=4.5e-10 Score=118.97 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=47.9
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042686 292 RCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQK 364 (596)
Q Consensus 292 ~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~ 364 (596)
.|++||+.|| |||||||.+|.|..=++.+....+.|+++.|+=|.-|.+-++....
T Consensus 380 a~~WWaiVTM-----------------TTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~ 435 (477)
T KOG3713|consen 380 AGFWWAVVTM-----------------TTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYS 435 (477)
T ss_pred chhheeeEEE-----------------eeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHH
Confidence 4889999999 9999999999999999999999999999998877665555544444
No 13
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.15 E-value=1.7e-10 Score=96.65 Aligned_cols=85 Identities=24% Similarity=0.210 Sum_probs=73.7
Q ss_pred eEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEE
Q 042686 455 PVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRA 529 (596)
Q Consensus 455 ~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A 529 (596)
++.|++|++|+++|+..+.+|+|++|.+++...+ .......+|++|| +. +++.+. ++..+++|
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g----~~---~~~~~~-----~~~~~~~a 68 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFG----EI---ELLTGK-----PSPFTVIA 68 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEES----GH---HHHHTS-----BBSSEEEE
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeecccc----ce---eecCCC-----ccEEEEEE
Confidence 3689999999999999999999999999998764 1245679999999 46 666665 89999999
Q ss_pred eceEEEEEechHhHhh-hhcCcc
Q 042686 530 LTDVEAFTLKADDVKC-ALLFRP 551 (596)
Q Consensus 530 ~t~~~l~~L~~~df~~-~~~f~~ 551 (596)
.++|+++.|++++|.. +.++|+
T Consensus 69 ~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 69 LTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SSSEEEEEEEHHHHHHHHHHSHH
T ss_pred ccCEEEEEEeHHHHHHHHHhCcC
Confidence 9999999999999999 888874
No 14
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.14 E-value=6.7e-10 Score=108.18 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=99.6
Q ss_pred hcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhh
Q 042686 433 RKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKEL 507 (596)
Q Consensus 433 ~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel 507 (596)
.+.+.|+..++.....+....+.+.+++|++|+++||+++.+|+|.+|.+.++... ..+...++|++|| +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg----~~ 78 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFG----EL 78 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhh----hH
Confidence 45667777788888888888999999999999999999999999999999998754 2345579999999 57
Q ss_pred hhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhh
Q 042686 508 IDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKR 571 (596)
Q Consensus 508 ~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~ 571 (596)
+++.+. +++++++|+++|+++.+++++|.+ +.+.|.+.......+....+.+..+.
T Consensus 79 ---~l~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~~~ 135 (214)
T COG0664 79 ---ALLGGD-----PRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALERL 135 (214)
T ss_pred ---HHhcCC-----CccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 777665 799999999999999999999999 54477775533333333333333333
No 15
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.13 E-value=4.9e-10 Score=112.01 Aligned_cols=131 Identities=10% Similarity=0.026 Sum_probs=97.8
Q ss_pred hhcchhhccccHHHHHHHHhccee-EEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec----c-eeeecCCCCeecCCch
Q 042686 432 LRKVEEFQNWDEFSLDYLFGCLKP-VVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK----L-SITIQRHQDHCDVRRK 505 (596)
Q Consensus 432 L~~v~lF~~l~~~~l~~L~~~l~~-~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~----~-~~~~~~~G~~FG~~~e 505 (596)
+++.+.|..+++++++.|....+. +.|++|+.|+++||..+.+|+|.+|.++++..+ + .+....+|++|| +
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g---~ 91 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVG---F 91 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceec---c
Confidence 455556667999999999988864 679999999999999999999999999998742 2 334459999999 4
Q ss_pred hhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhhccc
Q 042686 506 ELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRANDK 575 (596)
Q Consensus 506 el~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~~~~ 575 (596)
. ++.. . +++.+++|+++|+++.+++++|.+ ..++|.+.+..............++...+.
T Consensus 92 -~---~~~~-~-----~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (235)
T PRK11161 92 -D---AIGS-G-----QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQEMILLLS 152 (235)
T ss_pred -c---cccC-C-----CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 3332 2 445689999999999999999999 899999855333333333333334333333
No 16
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.13 E-value=6.4e-11 Score=124.93 Aligned_cols=116 Identities=19% Similarity=0.179 Sum_probs=102.5
Q ss_pred HHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec------ceeeecCCCC
Q 042686 425 RHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK------LSITIQRHQD 498 (596)
Q Consensus 425 ~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~------~~~~~~~~G~ 498 (596)
...+..+|+++|+|++++++.+..+++.++...|..|+.|+++|+.++.+|+|.+|+|.|...+ ..++.+..||
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd 346 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGD 346 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccc
Confidence 4456789999999999999999999999999999999999999999999999999999997754 3456779999
Q ss_pred eecCCchhhhhHhhccccccCCCCcccEEEEece-EEEEEechHhHhh-hhcCcch
Q 042686 499 HCDVRRKELIDWAKNENSYQQLPISDRTVRALTD-VEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 499 ~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~-~~l~~L~~~df~~-~~~f~~~ 552 (596)
+|| |- |+.... .|+++++|.++ ++++.|++|.|+. ...+.++
T Consensus 347 ~FG----E~---al~~ed-----vRtAniia~~~gv~cl~lDresF~~liG~l~~l 390 (732)
T KOG0614|consen 347 YFG----ER---ALLGED-----VRTANIIAQAPGVECLTLDRESFKKLIGDLEEL 390 (732)
T ss_pred hhh----HH---HhhccC-----ccchhhhccCCCceEEEecHHHHHHhcccHHHh
Confidence 999 56 777666 89999999998 9999999999998 6655554
No 17
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.11 E-value=8.1e-10 Score=96.28 Aligned_cols=104 Identities=24% Similarity=0.240 Sum_probs=88.5
Q ss_pred hhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhHh
Q 042686 437 EFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDWA 511 (596)
Q Consensus 437 lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~a 511 (596)
+|.+++++.++.++..++.+.+++|++|+++|++.+.+|+|.+|.+.+...+ ..+....+|++|| +. .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g----~~---~ 73 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFG----EL---A 73 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceec----hh---h
Confidence 4789999999999999999999999999999999999999999999987642 2445669999999 45 4
Q ss_pred hc--cccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 512 KN--ENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 512 l~--~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
+. ... ++..+++|.++|+++.++.+++.. ..+++.+
T Consensus 74 ~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 112 (120)
T smart00100 74 LLTNSRR-----AASATAVALELATLLRIDFRDFLQLLQENPQL 112 (120)
T ss_pred hccCCCc-----ccceEEEEEeeEEEEccCHHHHHHHHHHhHHH
Confidence 43 222 678899999999999999999998 7777654
No 18
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.09 E-value=4.6e-10 Score=111.78 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=88.9
Q ss_pred ccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhHhhccc
Q 042686 441 WDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDWAKNEN 515 (596)
Q Consensus 441 l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~al~~~ 515 (596)
+.+-+..++....+.+.|++|+.|+.+||+.+.+|+|.+|.|+++..+ ..+....+|++|| +. +++.+
T Consensus 19 ~~~~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G----~~---~~~~~ 91 (226)
T PRK10402 19 FKDCFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIG----EI---ELIDK 91 (226)
T ss_pred hhhcCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEE----ee---hhhcC
Confidence 344445568888999999999999999999999999999999997642 2345569999999 46 66655
Q ss_pred cccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch-hHHHHHHHHH
Q 042686 516 SYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV-SKEAAALIQL 562 (596)
Q Consensus 516 ~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~-~k~~~~~~q~ 562 (596)
. +++.+++|.++|+++.+++++|.. +.+.|.+ ..+.+.+.+.
T Consensus 92 ~-----~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~ 135 (226)
T PRK10402 92 D-----HETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSHK 135 (226)
T ss_pred C-----CCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5 889999999999999999999999 8889987 3344444443
No 19
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.05 E-value=1.7e-09 Score=115.90 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=108.7
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-ceeeecCCCCeecCCchhh
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-LSITIQRHQDHCDVRRKEL 507 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-~~~~~~~~G~~FG~~~eel 507 (596)
.++++++|.|..++++.+.+|...+....|.+||+|+..|.+.+.+|+|.+|.|+++..+ +.+....+|+.|| -.
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg----~~ 81 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFG----FS 81 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCeeeeeeccCcccc----ch
Confidence 568899999999999999999999999999999999999999999999999999998876 6677889999999 34
Q ss_pred hhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH-----HHHHHHHHHHHHHH
Q 042686 508 IDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK-----EAAALIQLVWRFKK 568 (596)
Q Consensus 508 ~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k-----~~~~~~q~~~~~~~ 568 (596)
++.+.. +....+.|.+++-+|.|+++.|.+ ..++|.+.. +++++-+..-+..+
T Consensus 82 ---~l~~~~-----~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~e 140 (610)
T COG2905 82 ---SLFTEL-----NKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAE 140 (610)
T ss_pred ---hhcccC-----CCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666655 555678888999999999999999 999998844 55555544444444
No 20
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.04 E-value=1.9e-09 Score=117.12 Aligned_cols=107 Identities=15% Similarity=0.207 Sum_probs=93.2
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec----ceeeecCCCCeecCCc
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK----LSITIQRHQDHCDVRR 504 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~----~~~~~~~~G~~FG~~~ 504 (596)
.+.++++++|++++++.++.++..++.+.|++||+|+++||..+.+|+|++|+|++...+ ..+...++|++||
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG--- 83 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFG--- 83 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEee---
Confidence 456889999999999999999999999999999999999999999999999999997743 3345669999999
Q ss_pred hhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcC
Q 042686 505 KELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLF 549 (596)
Q Consensus 505 eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f 549 (596)
+ + +.+. ++.++++|.++|+++.|++++|.. ....
T Consensus 84 ~-----~-l~~~-----~~~~~~~A~~d~~v~~ip~~~~~~~~~~~ 118 (413)
T PLN02868 84 Y-----G-LSGS-----VHSADVVAVSELTCLVLPHEHCHLLSPKS 118 (413)
T ss_pred h-----h-hCCC-----CcccEEEECCCEEEEEEcHHHHhhhcccc
Confidence 4 3 2344 789999999999999999999998 4443
No 21
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=98.90 E-value=9.6e-09 Score=102.64 Aligned_cols=118 Identities=14% Similarity=0.020 Sum_probs=90.9
Q ss_pred HHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec----c-eeeecCCCCeecCCchhhhhHhhccccccCCCC
Q 042686 448 YLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK----L-SITIQRHQDHCDVRRKELIDWAKNENSYQQLPI 522 (596)
Q Consensus 448 ~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~----~-~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~ 522 (596)
.+....+.+.|++|++|+++||.++.+|+|++|.|.++..+ + ......+|++|| + . + +. +
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG---~-~---~---~~-----~ 97 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFG---L-E---S---GS-----T 97 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceec---c-c---C---CC-----c
Confidence 45566788999999999999999999999999999987632 2 344559999999 3 3 1 22 6
Q ss_pred cccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhhccccCCCC
Q 042686 523 SDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRANDKNAKPR 580 (596)
Q Consensus 523 ~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~~~~~~~~~ 580 (596)
+..+++|+++|+++.+++++|.. +.+.|++.++.....+...+...++...+...+++
T Consensus 98 ~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~ 156 (230)
T PRK09391 98 HRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAM 156 (230)
T ss_pred CCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 77999999999999999999999 88999986655555555555555555555444443
No 22
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.80 E-value=6.5e-09 Score=105.22 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=39.0
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 042686 293 CLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLI 352 (596)
Q Consensus 293 slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~ii 352 (596)
|++||+.|| |||||||..|.|..-++...++-|.|++-.|.=+
T Consensus 397 aFWwavVTM-----------------TTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPV 439 (507)
T KOG1545|consen 397 AFWWAVVTM-----------------TTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPV 439 (507)
T ss_pred cceEEEEEE-----------------EeeccccceecccCceehhhHHhhhhheEecccc
Confidence 788999999 9999999999999999999999999988777544
No 23
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.79 E-value=1.7e-08 Score=83.37 Aligned_cols=55 Identities=16% Similarity=0.353 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIA 360 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~ 360 (596)
.|..|+||++.|+ ||+||||+.|.+...++++++.++.|..+++..++.+++.+.
T Consensus 24 ~~~da~yfs~~t~-----------------tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTI-----------------TTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHH-----------------TT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-----------------hcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3778999999999 999999999999999999999999999999999999988775
No 24
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.77 E-value=3.8e-08 Score=95.05 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=68.4
Q ss_pred CCEEEecCCCcCeEEEEEeeEEEEeeec----c-eeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEE
Q 042686 461 RTVIIQEGDPINVMTFVLQGKTWAYSKK----L-SITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEA 535 (596)
Q Consensus 461 ge~I~~~Gd~~~~~yfI~~G~v~v~~~~----~-~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l 535 (596)
|+.|+++||+.+.+|+|.+|.|+++... + .+...++|++|| +. +++.+. ..++..+++|.++|++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G----~~---~~~~~~---~~~~~~~~~A~~~~~v 70 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG----VL---SLITGH---RSDRFYHAVAFTRVEL 70 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee----ee---eeccCC---CCccceEEEEecceEE
Confidence 7899999999999999999999987632 2 245669999999 46 555443 0034578999999999
Q ss_pred EEechHhHhh-hhcCcchhH
Q 042686 536 FTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 536 ~~L~~~df~~-~~~f~~~~k 554 (596)
+.+++++|.. ..+.|++..
T Consensus 71 ~~i~~~~~~~l~~~~p~l~~ 90 (193)
T TIGR03697 71 LAVPIEQVEKAIEEDPDLSM 90 (193)
T ss_pred EEeeHHHHHHHHHHChHHHH
Confidence 9999999999 999999854
No 25
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=2.3e-08 Score=101.77 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=98.8
Q ss_pred HHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-ceeeecCCCCeecCC
Q 042686 425 RHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-LSITIQRHQDHCDVR 503 (596)
Q Consensus 425 ~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-~~~~~~~~G~~FG~~ 503 (596)
..++.+.|+++|+++.++......+++.+.++.|.+|+.|+.+|+.++.+|+|.+|.|.+.... .+....+.|++||
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyfg-- 312 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYFG-- 312 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCeEEEechhhhcc--
Confidence 4578899999999999999999999999999999999999999999999999999999886543 2223789999999
Q ss_pred chhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh
Q 042686 504 RKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC 545 (596)
Q Consensus 504 ~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~ 545 (596)
|+ |+..+. ||.+||.|.+...+..++++.|+.
T Consensus 313 --e~---al~~~~-----pr~Atv~a~~~~kc~~~dk~~fer 344 (368)
T KOG1113|consen 313 --EL---ALLKNL-----PRAATVVAKGRLKCAKLDKPRFER 344 (368)
T ss_pred --hH---HHHhhc-----hhhceeeccCCceeeeeChHHHHH
Confidence 68 888887 999999999999999999999988
No 26
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.64 E-value=3e-07 Score=89.60 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=66.0
Q ss_pred cceeEEeCCCCEEEecCC--CcCeEEEEEeeEEEEeeec----c-eeeecCCCCeecCCchhhhhHhhccccccCCCCcc
Q 042686 452 CLKPVVFSERTVIIQEGD--PINVMTFVLQGKTWAYSKK----L-SITIQRHQDHCDVRRKELIDWAKNENSYQQLPISD 524 (596)
Q Consensus 452 ~l~~~~~~~ge~I~~~Gd--~~~~~yfI~~G~v~v~~~~----~-~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~ 524 (596)
..+.+.|++|++|+++|| +.+.+|+|++|.|+++... + ......+|++|| + . ++. +. +++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G---~-~---~~~-~~-----~~~ 71 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFG---E-E---ALA-GA-----ERA 71 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeec---h-H---Hhc-CC-----CCC
Confidence 467889999999999999 7799999999999997742 2 334559999999 4 5 443 33 678
Q ss_pred cEEEEeceEEEEEechHhHh
Q 042686 525 RTVRALTDVEAFTLKADDVK 544 (596)
Q Consensus 525 ~tv~A~t~~~l~~L~~~df~ 544 (596)
.+++|+++|+++.+++++|.
T Consensus 72 ~~~~A~~~~~v~~i~~~~~~ 91 (202)
T PRK13918 72 YFAEAVTDSRIDVLNPALMS 91 (202)
T ss_pred ceEEEcCceEEEEEEHHHcC
Confidence 89999999999999998873
No 27
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.50 E-value=3e-06 Score=90.73 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042686 286 FPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKI 365 (596)
Q Consensus 286 ~~~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~ 365 (596)
-+.-|-.|++|++.|+ |||||||.+|.|..-++.+.+.-++|..+||.--|.+++=++-.-
T Consensus 266 ~F~TyADALWWG~ITl-----------------tTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV-- 326 (654)
T KOG1419|consen 266 EFPTYADALWWGVITL-----------------TTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV-- 326 (654)
T ss_pred cchhHHHHHHhhheeE-----------------EeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh--
Confidence 4567899999999999 999999999999999999999999999999987776666554322
Q ss_pred HHHHHHHHhhccc-cccCCCHhHHHHHHHHHH
Q 042686 366 NQKWQVIRQSKHY-ADISRDQNVRGQFKKAKR 396 (596)
Q Consensus 366 ~~~~~~~~~~~~~-~~~~lp~~L~~rv~~y~~ 396 (596)
|++.++.+| ++++.-..|.+-.-+||.
T Consensus 327 ----Qeq~RQKHf~rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 327 ----QEQHRQKHFNRRRNPAASLIQCAWRYYA 354 (654)
T ss_pred ----HHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 222333378 777777777777777765
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.03 E-value=8.3e-06 Score=87.22 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042686 288 KKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQ 367 (596)
Q Consensus 288 ~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~ 367 (596)
--|-.|+|+-+.|| +||||||+...|..-+.|.++..+.|..+||--+-++..++.+-.+.--
T Consensus 287 ltyw~cvyfl~vtm-----------------stvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kygg 349 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTM-----------------STVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGG 349 (1103)
T ss_pred chhhheeeeeEEEe-----------------eeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCc
Confidence 35889999999999 9999999999999999999999999999999999999888876554222
Q ss_pred HHHHHHhhccc-cccCCCHhHHHHHHHHHH-HHH-hcCCCCCc-HHHHHHhcCHHHHHHHHHHHHHHHhhcchhhcc
Q 042686 368 KWQVIRQSKHY-ADISRDQNVRGQFKKAKR-EKL-TNKHVDVR-IDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQN 440 (596)
Q Consensus 368 ~~~~~~~~~~~-~~~~lp~~L~~rv~~y~~-~~~-~~~~~~~~-e~~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~ 440 (596)
++....-+.+- .--++ ..+.|..|++ +.+ ....+ | |--+|...||+|.-| .+++....++.+|++
T Consensus 350 eyk~ehgkkhivvcghi---tyesvshflkdflhedrddv--dvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 350 EYKAEHGKKHIVVCGHI---TYESVSHFLKDFLHEDRDDV--DVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred eeehhcCCeeEEEecce---eHHHHHHHHHHHhhcccccc--ceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 22111000000 00011 1233444443 233 23333 3 446677788887543 345566677777775
No 29
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.99 E-value=8.6e-06 Score=66.24 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=31.8
Q ss_pred ccceeCCCChhHHHHHHHHHHHHHHHHHHhcceee
Q 042686 18 RIKKIKDKEYIDRLMNVTAMILDVTAIILDPLFFY 52 (596)
Q Consensus 18 ~~~~I~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~ 52 (596)
...+|||+|.||.+||++++++++++++++|+.++
T Consensus 35 ~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~is 69 (77)
T PF08412_consen 35 GPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRIS 69 (77)
T ss_pred CCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 34599999999999999999999999999999843
No 30
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.94 E-value=0.00017 Score=77.55 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEI 359 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i 359 (596)
+..|+||++.|+ ||+||||+.|.+...++|++++++.|..+|++.++.+...+
T Consensus 169 ~~dA~y~svvt~-----------------tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 169 LSTAFYFSIVTM-----------------STVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred HHHHHHhhheee-----------------ecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667999999999 99999999999999999999999999999999999886643
No 31
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.86 E-value=2.4e-06 Score=87.59 Aligned_cols=51 Identities=10% Similarity=0.276 Sum_probs=44.1
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 042686 292 RCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVF----LIGRMQTEI 359 (596)
Q Consensus 292 ~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~----iig~i~~~i 359 (596)
.++++.+.|| ||.||||.+|.|..-++|..++-+.|+++.|. +++|++.|-
T Consensus 359 aaFWYTIVTm-----------------TTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 359 AAFWYTIVTM-----------------TTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred HhHhhheeee-----------------eeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 5788999999 99999999999999999999999999998876 455555554
No 32
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.80 E-value=2.6e-05 Score=87.73 Aligned_cols=119 Identities=17% Similarity=0.118 Sum_probs=95.6
Q ss_pred HHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeee-----cceeeecCCCCeecCCchhhhhHhhcccccc
Q 042686 444 FSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSK-----KLSITIQRHQDHCDVRRKELIDWAKNENSYQ 518 (596)
Q Consensus 444 ~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~-----~~~~~~~~~G~~FG~~~eel~~~al~~~~~~ 518 (596)
.++..+-..+......+|+.++++||..+++|+|++|+++-... ++.+...+.||.+| +. -.+.+.
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG----~~---E~lt~~-- 569 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIG----EV---EMLTKQ-- 569 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceee----hh---HHhhcC--
Confidence 35666666788899999999999999999999999999965443 13456669999999 45 334455
Q ss_pred CCCCcccEEEEeceEEEEEechHhHhh-hhcCcch-hHHHHHHHHHHHHHHHhhhhcc
Q 042686 519 QLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV-SKEAAALIQLVWRFKKHKRAND 574 (596)
Q Consensus 519 ~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~-~k~~~~~~q~~~~~~~~r~~~~ 574 (596)
+|..|+.|+.++|+.+||..-|.. ..+||.+ .|..+.+.|.....++.+-.+.
T Consensus 570 ---~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~~g~l~~~~~~~ 624 (1158)
T KOG2968|consen 570 ---PRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKILGSLQRDPGSG 624 (1158)
T ss_pred ---CccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHhhhhhccCCCCc
Confidence 899999999999999999999999 8899997 7788888887766666554443
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.41 E-value=0.00043 Score=72.74 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCC--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNL--ETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIAR 361 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygd--i~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~ 361 (596)
.+..+++|++.|+ ||+|||. ++|....=.+..++-+++|.++.|+++|-+-+-++.
T Consensus 84 ~f~~aF~FSveT~-----------------tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 84 SFTSAFLFSVETQ-----------------TTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp THHHHHHHHHHHH-----------------TT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred chhhheeEEEEEE-----------------EEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4778999999999 9999998 567777777778888999999999999887554443
No 34
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0011 Score=71.51 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQK 364 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~ 364 (596)
+..|+|++++++ ||+|||+++|.|...++++|+.-++|.-++..++++++..+...-.
T Consensus 116 f~~al~fs~tv~-----------------TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 116 FSSALLFSITVI-----------------TTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred cchhHhhhhhee-----------------eeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 446999999999 9999999999999999999999999999999999999998876554
No 35
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.0079 Score=62.70 Aligned_cols=59 Identities=17% Similarity=0.358 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLE--TSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKI 365 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi--~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~ 365 (596)
...|+-|++-|= ||+|||-- +...+.=.+.-++-+|+|+++-|+++|.+-+=++...++
T Consensus 113 f~sAFLFSiETQ-----------------tTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKR 173 (400)
T KOG3827|consen 113 FTSAFLFSIETQ-----------------TTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKR 173 (400)
T ss_pred hhhhheeeeeee-----------------eeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 456788888888 99999954 444545556666788999999999999986655554443
No 36
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.62 E-value=0.034 Score=54.12 Aligned_cols=104 Identities=9% Similarity=-0.063 Sum_probs=73.7
Q ss_pred HHHHHHHhcceeEEeCCCCEE-EecCCCcCeEEEEEeeEEEEeeec-ceeeecCCCCeecCCchhhhhHhhccccccCCC
Q 042686 444 FSLDYLFGCLKPVVFSERTVI-IQEGDPINVMTFVLQGKTWAYSKK-LSITIQRHQDHCDVRRKELIDWAKNENSYQQLP 521 (596)
Q Consensus 444 ~~l~~L~~~l~~~~~~~ge~I-~~~Gd~~~~~yfI~~G~v~v~~~~-~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~ 521 (596)
...+.|....++..+++|..+ +.+.+..+..+++.+|.+.+.+.+ ..+.+..+-..||.+ + ++. +.
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~ll~~t~~aP~IlGl~-~-----~~~-~~----- 80 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLA-D-----GLM-KN----- 80 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCCeEEEeccCCeEeecc-c-----ccC-CC-----
Confidence 356677777888999999997 555555577999999999996544 344566788889921 0 111 11
Q ss_pred CcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHH
Q 042686 522 ISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAAL 559 (596)
Q Consensus 522 ~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~ 559 (596)
......+|.++|+++.++++++.+ .++..=+..+++.+
T Consensus 81 ~~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~~~~~~l 119 (207)
T PRK11832 81 DIPYKLISEGNCTGYHLPAKQTITLIEQNQLWRDAFYWL 119 (207)
T ss_pred CceEEEEEcCccEEEEeeHHHHHHHHHHhchHHHHHHHH
Confidence 334689999999999999999999 77765444433333
No 37
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.13 Score=55.12 Aligned_cols=58 Identities=9% Similarity=0.015 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 286 FPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIA 360 (596)
Q Consensus 286 ~~~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~ 360 (596)
....|+.|+.....|. -++||||++|.|.-=+..+++.-++|+...|.+++-++.-+.
T Consensus 284 ~~~~~~nsmWli~iTF-----------------lsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe 341 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITF-----------------LSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE 341 (489)
T ss_pred hHHHHHhhHHHHHHHH-----------------hhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 4556888988888888 899999999999999999999999999999999998876554
No 38
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=96.33 E-value=0.026 Score=64.39 Aligned_cols=99 Identities=9% Similarity=0.023 Sum_probs=76.4
Q ss_pred HHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhh-HhhccccccCCC
Q 042686 448 YLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELID-WAKNENSYQQLP 521 (596)
Q Consensus 448 ~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~-~al~~~~~~~~~ 521 (596)
++..+++...+..||+|++.|++.+.+|.+.+|.++|...+ ..+.+..+|+.|- . +++ ...+++..+ .
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~t---S-llSiLd~l~~~ps--~ 183 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFT---S-LLSILDSLPGFPS--L 183 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchH---h-HHHHHHhccCCCc--c
Confidence 33478888899999999999999999999999999987654 3456679998887 3 421 112222211 2
Q ss_pred CcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 522 ISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 522 ~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
.++..++|.++|.+..++.+.|.. ...||+-
T Consensus 184 ~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s 215 (1158)
T KOG2968|consen 184 SRTIAAKAATDCTVARIPYTSFRESFHKNPES 215 (1158)
T ss_pred cceeeeeeecCceEEEeccchhhhhhccChHH
Confidence 466789999999999999999999 8899963
No 39
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=95.98 E-value=0.17 Score=46.59 Aligned_cols=119 Identities=10% Similarity=0.094 Sum_probs=85.9
Q ss_pred cccHHHHHHHHhc-ceeEEeCCCCEEEecCC-CcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhhhhHhhccccc
Q 042686 440 NWDEFSLDYLFGC-LKPVVFSERTVIIQEGD-PINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKELIDWAKNENSY 517 (596)
Q Consensus 440 ~l~~~~l~~L~~~-l~~~~~~~ge~I~~~Gd-~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel~~~al~~~~~ 517 (596)
+++.....+++.+ .+.+...+|+.-.-||. +.+.+-++++|++.|..+++..-...|-++.. ++| - .+...+.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlD-SPE-W--~s~~~s~- 88 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLD-SPE-W--ESLRPSE- 88 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeeccccccc-Chh-h--hccccCC-
Confidence 6788888888888 56678999999988885 47899999999999988876555555555544 222 1 0111111
Q ss_pred cCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH-----HHHHHHHHHHH
Q 042686 518 QQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK-----EAAALIQLVWR 565 (596)
Q Consensus 518 ~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k-----~~~~~~q~~~~ 565 (596)
-..-..|+.|.++|..+..+|+.+.. +.+-|-+.. .|+-+.+.++.
T Consensus 89 --~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~KLy~ 140 (153)
T PF04831_consen 89 --DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAEKLYS 140 (153)
T ss_pred --CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 01556899999999999999999999 777776643 66666666665
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.84 E-value=0.036 Score=56.68 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCCh-------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDV-------GE-NIFAICMTNYGVVLFVFLIGRMQTEIAR 361 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~-------~E-~~f~i~~mi~G~~~fa~iig~i~~~i~~ 361 (596)
|+.|+|+++.|+ ||+|+||.+|... .+ +.++.+..++|..+++..++-+.-.+..
T Consensus 187 yfds~YyCFITl-----------------tTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t 249 (350)
T KOG4404|consen 187 YFDSYYYCFITL-----------------TTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMT 249 (350)
T ss_pred hhhhhheeeeee-----------------eeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999 9999999987332 23 4556667788888888777766655555
Q ss_pred hHH
Q 042686 362 SQK 364 (596)
Q Consensus 362 ~~~ 364 (596)
++.
T Consensus 250 ~~~ 252 (350)
T KOG4404|consen 250 MNA 252 (350)
T ss_pred hhh
Confidence 554
No 41
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=93.71 E-value=0.11 Score=57.67 Aligned_cols=106 Identities=9% Similarity=0.082 Sum_probs=80.4
Q ss_pred HHHHhhcchhhccccHHHHHHHHhcceeEE-eCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchh
Q 042686 428 GRKLLRKVEEFQNWDEFSLDYLFGCLKPVV-FSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKE 506 (596)
Q Consensus 428 ~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~-~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~ee 506 (596)
..+++++.|.|.+++-...++|+..|.... =.+|.+|...|+.-+..+.|++|.|+|...+.....+.-|+.||+.+-
T Consensus 279 LLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e~l~mGnSFG~~PT- 357 (1283)
T KOG3542|consen 279 LLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKREELKMGNSFGAEPT- 357 (1283)
T ss_pred HHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceEEeecccccCCCCC-
Confidence 357888899999999999999988876554 467999999999999999999999999988765666788999994211
Q ss_pred hhhHhhccccccCCCCcccEE-EEeceEEEEEechHhHhh
Q 042686 507 LIDWAKNENSYQQLPISDRTV-RALTDVEAFTLKADDVKC 545 (596)
Q Consensus 507 l~~~al~~~~~~~~~~~~~tv-~A~t~~~l~~L~~~df~~ 545 (596)
...+ ....-+ .-+.+|+...+...|+-.
T Consensus 358 -----~dkq------ym~G~mRTkVDDCqFVciaqqDycr 386 (1283)
T KOG3542|consen 358 -----PDKQ------YMIGEMRTKVDDCQFVCIAQQDYCR 386 (1283)
T ss_pred -----cchh------hhhhhhheecccceEEEeehhhHHH
Confidence 0000 111112 235689999999888776
No 42
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=93.40 E-value=0.031 Score=57.15 Aligned_cols=52 Identities=12% Similarity=0.258 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 291 IRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEI 359 (596)
Q Consensus 291 i~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i 359 (596)
.-|+|||.+.+ ||+|||-.+|.|..=++|+|+.-++|+-+--..+.+++.-+
T Consensus 82 ~GaFYFa~TVI-----------------tTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERl 133 (350)
T KOG4404|consen 82 AGAFYFATTVI-----------------TTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERL 133 (350)
T ss_pred CcceEEEEEEE-----------------eeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHH
Confidence 35899999999 99999999999999999999998888766555554444433
No 43
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.13 E-value=8.3 Score=45.36 Aligned_cols=127 Identities=12% Similarity=0.054 Sum_probs=71.1
Q ss_pred eeCCCChhHH---------HHHHHHHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHHhh
Q 042686 21 KIKDKEYIDR---------LMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISH 91 (596)
Q Consensus 21 ~I~P~s~~~~---------~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~l~ 91 (596)
.+.|.++||. ..|-+++++++.+++++.++ -|.... ....-.++++-|++..++|++.+.++
T Consensus 1106 lF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale--rp~i~~-------~s~EriFltlsnyIFtaIfV~Em~lK 1176 (1956)
T KOG2302|consen 1106 LFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE--RPAIVE-------GSTERIFLTLSNYIFTAIFVVEMTLK 1176 (1956)
T ss_pred hcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc--cccccc-------CcceEEEEEecchHHHHHHHHHHHHH
Confidence 5778888874 46777888888888888776 121111 00112345556799999999999988
Q ss_pred cc-cccccCcchhhhhhcccCCCccccChhHHhhhhhhhhhhhcc--chhhhhhhhhhhccCCCCCchhHHHHHHHHHHH
Q 042686 92 SK-LHMEKGNQREKFKAIFKGEGEVPEDPMGRMRKLFLIDCLAIL--PIPQVLVIFLVIFGIRGPGFSTAMTFFVLQYSL 168 (596)
Q Consensus 92 f~-t~y~~~~~~~~~~~~~~~~g~~V~d~~~Ia~~~F~lDlls~l--P~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rl~ 168 (596)
-. +|.+ -|+ ..-...+|=++|.+-.+ -+|+++. +..++. .++++.+|.+
T Consensus 1177 VVALGl~--------------fge----~aYl~ssWN~LDgflv~vsviDilvs-------~asa~g---~kILgVlrvL 1228 (1956)
T KOG2302|consen 1177 VVALGLY--------------FGE----QAYLRSSWNVLDGFLVAVSVIDILVS-------QASAGG---AKILGVLRVL 1228 (1956)
T ss_pred HHhhhhc--------------cch----HHHHHHHHHhhhHHHHHHHHHHHHHH-------Hhhhhh---HHHHHHHHHH
Confidence 65 3543 222 22222267667754222 1233322 112222 2345556666
Q ss_pred HHHHHHHhHhhhhhhh
Q 042686 169 RVIRTYFLFTHATRVS 184 (596)
Q Consensus 169 Rl~Rl~~l~~~~~~~~ 184 (596)
|++|-+|-++.+.+..
T Consensus 1229 RlLRtlRpLRviSra~ 1244 (1956)
T KOG2302|consen 1229 RLLRTLRPLRVISRAP 1244 (1956)
T ss_pred HHHHHhhHHHHHhhcc
Confidence 6666666666655543
No 44
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.89 E-value=0.27 Score=54.67 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=74.3
Q ss_pred HHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhhhh
Q 042686 430 KLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKELID 509 (596)
Q Consensus 430 ~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel~~ 509 (596)
..|.+...|.++-...+..++...+...++...++++.|+.+...|++++|.|-|. -....|-..|| ...
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~-----gqi~mp~~~fg---kr~-- 106 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE-----GQIYMPYGCFG---KRT-- 106 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee-----cceecCccccc---ccc--
Confidence 35677888999999999999999999999999999999999999999999999321 12336667788 321
Q ss_pred HhhccccccCCCCcccEEEEeceEEEEEechH
Q 042686 510 WAKNENSYQQLPISDRTVRALTDVEAFTLKAD 541 (596)
Q Consensus 510 ~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~ 541 (596)
+. .|+.+.-.++++|..+++..
T Consensus 107 -----g~-----~r~~nclllq~semivid~~ 128 (1283)
T KOG3542|consen 107 -----GQ-----NRTHNCLLLQESEMIVIDYP 128 (1283)
T ss_pred -----cc-----ccccceeeecccceeeeecC
Confidence 33 68888999999999998543
No 45
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=90.42 E-value=0.07 Score=57.54 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHH--------HHHHHHHHHHHHHHHHHH
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGEN--------IFAICMTNYGVVLFVFLI 352 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~--------~f~i~~mi~G~~~fa~ii 352 (596)
-|+.|+||++.++ ||+|+||++|.+.... .+..+..++|....+.+.
T Consensus 242 ~f~~~~Yf~fisl-----------------tTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISL-----------------TTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEe-----------------eeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 3778999999999 9999999999997755 466677777877777665
No 46
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=89.92 E-value=0.23 Score=53.91 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHH
Q 042686 291 IRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAIC 339 (596)
Q Consensus 291 i~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~ 339 (596)
..|+||.+.|. +||||||-.|......+...+
T Consensus 219 f~s~y~v~vtf-----------------stvgygd~~pd~w~sql~~vi 250 (1087)
T KOG3193|consen 219 FTSFYFVMVTF-----------------STVGYGDWYPDYWASQLCVVI 250 (1087)
T ss_pred eeeEEEEEEEE-----------------eeccccccccccchhhHHHHH
Confidence 45889999999 999999999988777766543
No 47
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.69 E-value=22 Score=41.33 Aligned_cols=40 Identities=20% Similarity=0.113 Sum_probs=32.9
Q ss_pred hcCHHHHHHHHHHHHHHHh-----hcchhhccccHHHHHHHHhcc
Q 042686 414 DLSLDAEKEVKRHMGRKLL-----RKVEEFQNWDEFSLDYLFGCL 453 (596)
Q Consensus 414 ~Lp~~Lr~~i~~~l~~~~L-----~~v~lF~~l~~~~l~~L~~~l 453 (596)
.||+.||+.+..+...+.. ..-.+++++|++....+..++
T Consensus 372 ~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 372 QLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 4999999999988766554 456789999999988888877
No 48
>PLN03223 Polycystin cation channel protein; Provisional
Probab=73.20 E-value=81 Score=39.09 Aligned_cols=65 Identities=9% Similarity=-0.061 Sum_probs=34.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHHhhc
Q 042686 24 DKEYIDRLMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISHS 92 (596)
Q Consensus 24 P~s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~l~f 92 (596)
+.+.++..-+++.+++++|.++.--..+.---......+-+| ...|-++|++.=++-+.=|++-|
T Consensus 1170 t~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYF----KSfWNwLEIl~IlLS~AAIvLYF 1234 (1634)
T PLN03223 1170 YEDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYF----LSGWNYVDFASIGLHLATIMMWF 1234 (1634)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHh----ccchHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777765543322100000000011222 23688888877777777666644
No 49
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.06 E-value=45 Score=38.77 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=53.1
Q ss_pred cccccCCCCCCChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHhhccc-cccCCCHhHHHH
Q 042686 319 SAFGQNLETSNDVG------ENIFAICMTNYGVVLFVFLIGRMQTEIARSQKIN-QKWQVIRQSKHY-ADISRDQNVRGQ 390 (596)
Q Consensus 319 ttvGygdi~p~~~~------E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~-~~~~~~~~~~~~-~~~~lp~~L~~r 390 (596)
.|+|+||....... -.+|.+++.++.+.+.-.+|+-|++...+....+ ++.+.+...+-. -++.+|+.++.|
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~iL~lErs~p~~~r~~ 680 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAATILMLERSLPPALRKR 680 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 68999998654332 3566777778888888899999999888887755 555544444433 667899999888
Q ss_pred HH
Q 042686 391 FK 392 (596)
Q Consensus 391 v~ 392 (596)
-+
T Consensus 681 ~~ 682 (782)
T KOG3676|consen 681 FR 682 (782)
T ss_pred Hh
Confidence 33
No 50
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.48 E-value=29 Score=43.94 Aligned_cols=22 Identities=0% Similarity=-0.072 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhcc
Q 042686 72 TATVIRSVLDFLKLGHFISHSK 93 (596)
Q Consensus 72 ~~~~~~~~~D~~f~~Di~l~f~ 93 (596)
.+...|.+.-.+|.+.++++--
T Consensus 873 ~L~y~D~~Ft~iFt~Em~lK~i 894 (1592)
T KOG2301|consen 873 ILEYADYIFTYIFTFEMLLKWI 894 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999854
No 51
>COG4709 Predicted membrane protein [Function unknown]
Probab=70.13 E-value=13 Score=35.64 Aligned_cols=62 Identities=13% Similarity=0.048 Sum_probs=48.6
Q ss_pred cCCCHhHHHHHHHHHHHHH---hcCCCCCcHHHHHHhc--CHHHHHHHHHHHHHHHhhcchhhccccHH
Q 042686 381 ISRDQNVRGQFKKAKREKL---TNKHVDVRIDSFISDL--SLDAEKEVKRHMGRKLLRKVEEFQNWDEF 444 (596)
Q Consensus 381 ~~lp~~L~~rv~~y~~~~~---~~~~~~~~e~~il~~L--p~~Lr~~i~~~l~~~~L~~v~lF~~l~~~ 444 (596)
.++|++.++++..+|+-.+ +..|. +|+|+..+| |.++-.|+....-.+-.+.-|-+++....
T Consensus 15 ~~Lp~~~r~e~m~dyeehF~~a~~~Gk--sE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 15 EGLPREERREIMYDYEEHFREAQEAGK--SEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhhcCC--CHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 4699999999999999887 55666 799999998 77777887777666666666666666553
No 52
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=68.93 E-value=2.2e+02 Score=34.04 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=28.3
Q ss_pred HhcCHHHHHHHHHHHHHHH----hhcchhhccccHHHHHHHHhcc
Q 042686 413 SDLSLDAEKEVKRHMGRKL----LRKVEEFQNWDEFSLDYLFGCL 453 (596)
Q Consensus 413 ~~Lp~~Lr~~i~~~l~~~~----L~~v~lF~~l~~~~l~~L~~~l 453 (596)
+.+|+.||.++..++.... +.+-.+++.+|+....+++..+
T Consensus 327 ~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l 371 (823)
T PLN03192 327 NRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHL 371 (823)
T ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHH
Confidence 3489999999988765432 3334567788887777776654
No 53
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=68.79 E-value=9.6 Score=29.62 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=32.5
Q ss_pred EEeCCCCEEEecCCCcC-eEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 456 VVFSERTVIIQEGDPIN-VMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 456 ~~~~~ge~I~~~Gd~~~-~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
..++||+..-..-.... ++++|++|++++..++ ....+.+|+.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~-~~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDG-ERVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEETT-EEEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEcc-EEeEccCCEEEE
Confidence 46788887755555555 9999999999888543 345567877653
No 54
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=60.27 E-value=17 Score=31.65 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=34.4
Q ss_pred cCCCHhHHHHHHHHHHHHH-h----------cCCCCCcHHHHHHhcCHHHHHHHHHH
Q 042686 381 ISRDQNVRGQFKKAKREKL-T----------NKHVDVRIDSFISDLSLDAEKEVKRH 426 (596)
Q Consensus 381 ~~lp~~L~~rv~~y~~~~~-~----------~~~~~~~e~~il~~Lp~~Lr~~i~~~ 426 (596)
.-+|+++|..|...+.-.- . .... |...++..||+.||.+|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~--d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEM--DNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCC--CHHHHHHhCCHHHHHHHhhc
Confidence 3489999999999988653 1 1223 67899999999999998754
No 55
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=53.96 E-value=4.1e+02 Score=31.42 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042686 291 IRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLE-TSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARS 362 (596)
Q Consensus 291 i~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi-~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~ 362 (596)
..+++|++-++ +-++--++ .-....|.+..++.-+..++..-.+++-+.+++.+.
T Consensus 555 ~~tLFWsiFgl-----------------v~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnS 610 (822)
T KOG3609|consen 555 SKTLFWSIFGL-----------------VVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNS 610 (822)
T ss_pred HHHHHHHHHhc-----------------ccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhH
Confidence 36899999877 43333222 224455555554444444444444444444444443
No 56
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=53.82 E-value=21 Score=28.69 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=29.9
Q ss_pred CCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 459 SERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 459 ~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
.||..=..... +++.+|++|.+.+...+......++||.|-
T Consensus 15 ~pg~~~~~~~~--~E~~~vleG~v~it~~~G~~~~~~aGD~~~ 55 (74)
T PF05899_consen 15 TPGKFPWPYPE--DEFFYVLEGEVTITDEDGETVTFKAGDAFF 55 (74)
T ss_dssp ECEEEEEEESS--EEEEEEEEEEEEEEETTTEEEEEETTEEEE
T ss_pred CCceeEeeCCC--CEEEEEEEeEEEEEECCCCEEEEcCCcEEE
Confidence 45554333322 889999999999988765567789998875
No 57
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=52.29 E-value=5.7e+02 Score=32.03 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHhhc-cc-cccCCCHhHH
Q 042686 336 FAICMTNYGVVLFVFLIGRMQTEIARSQKINQKW--QVIRQSK-HY-ADISRDQNVR 388 (596)
Q Consensus 336 f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~--~~~~~~~-~~-~~~~lp~~L~ 388 (596)
.++++.+...++.-.+|+-.+.+..+....+.+. -+|+..+ +| .+-.+||.+.
T Consensus 1019 l~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iWkFQRY~limeyh~rP~LPPPfi 1075 (1381)
T KOG3614|consen 1019 LVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIWKFQRYSLIMEYHSRPALPPPFI 1075 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCcH
Confidence 3444555555566666666666665555543332 3455556 88 8888887764
No 58
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=51.49 E-value=79 Score=28.35 Aligned_cols=48 Identities=6% Similarity=-0.107 Sum_probs=32.1
Q ss_pred eeEEeCCCCEEEecCCCcCeEEEEEeeEEEEe-eecceeeecCCCCeec
Q 042686 454 KPVVFSERTVIIQEGDPINVMTFVLQGKTWAY-SKKLSITIQRHQDHCD 501 (596)
Q Consensus 454 ~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~-~~~~~~~~~~~G~~FG 501 (596)
....++||..+-..-....++++|++|++.+. ..+.....+.+||.+-
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~~~L~aGD~i~ 86 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEVHPIRPGTMYA 86 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEEEEeCCCeEEE
Confidence 34567888755322122247999999999887 4334446679999876
No 59
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=49.67 E-value=1.8e+02 Score=26.72 Aligned_cols=18 Identities=11% Similarity=-0.064 Sum_probs=7.9
Q ss_pred CChhHHHHHHHHHHHhhh
Q 042686 284 TDFPKKLIRCLRWGLQNL 301 (596)
Q Consensus 284 ~~~~~~Yi~slYwa~~tl 301 (596)
+........++-.++.++
T Consensus 136 ~~~~~~~f~~~~~s~~~~ 153 (200)
T PF00520_consen 136 DIYGYENFDSFGESLYWL 153 (200)
T ss_dssp -SSTHHHHSSHHHHHHHH
T ss_pred cccccccccccccccccc
Confidence 334444444444444444
No 60
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=47.23 E-value=60 Score=30.87 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=35.6
Q ss_pred CCCHhHHHHHHHHHHHHH---hcCCCCCcHHHHHHhc--CHHHHHHHHHHH
Q 042686 382 SRDQNVRGQFKKAKREKL---TNKHVDVRIDSFISDL--SLDAEKEVKRHM 427 (596)
Q Consensus 382 ~lp~~L~~rv~~y~~~~~---~~~~~~~~e~~il~~L--p~~Lr~~i~~~l 427 (596)
++|++-++++.+||+-.. ..+|. +|+++.++| |..+-+++..+.
T Consensus 16 ~lp~~e~~e~l~~Y~e~f~d~~~~G~--sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 16 KLPEEEREEILEYYEEYFDDAGEEGK--SEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhhCCC--CHHHHHHHcCCHHHHHHHHHHhh
Confidence 599999999999999888 24566 899999998 677777766554
No 61
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=40.01 E-value=46 Score=29.84 Aligned_cols=60 Identities=7% Similarity=0.077 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042686 286 FPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQ 363 (596)
Q Consensus 286 ~~~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~ 363 (596)
.......++++.+.++ +. +.++..|.+...+++.++..+.+.++.++--|++++.+....
T Consensus 41 ~~~~~~~~~~~~~~~~-----------------~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 100 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTL-----------------LQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK 100 (148)
T ss_dssp HHHHHHHHHHHCCCCC-----------------HH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CcccHHHHHHHHHHhh-----------------cc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4455667888888777 55 335789999999999999999999999999999988876543
No 62
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=38.75 E-value=66 Score=28.60 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=38.3
Q ss_pred ceeEEeCCCCEEEecCCC-cCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 453 LKPVVFSERTVIIQEGDP-INVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 453 l~~~~~~~ge~I~~~Gd~-~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
+....+.||..+-.--.+ .....+|++|++++..+ .....+.+||++-
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~~~l~~Gd~i~ 93 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEKKELKAGDVII 93 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCceEecCCCEEE
Confidence 345678999988777676 77899999999988777 5556779999987
No 63
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=33.96 E-value=1.1e+02 Score=26.70 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=42.4
Q ss_pred CCCHhHHHHHHHHHHHHH-hc---------C---CCCCcHHHHHHhcCHHHHHHHHHHHHHHHhhc--------------
Q 042686 382 SRDQNVRGQFKKAKREKL-TN---------K---HVDVRIDSFISDLSLDAEKEVKRHMGRKLLRK-------------- 434 (596)
Q Consensus 382 ~lp~~L~~rv~~y~~~~~-~~---------~---~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~L~~-------------- 434 (596)
.||+++|.+|..-+...- .. . .-+ -..++|..||+.+|.+|..+.....-+.
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~-I~pefL~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d 86 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQ-IDPEFLAALPPDIREEVLAQERRERRRQERQQNARQHPQEMD 86 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccc-cCHHHHHhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCC
Confidence 489999999855544321 00 0 000 1369999999999999987765543222
Q ss_pred -chhhccccHHHHHHHHh
Q 042686 435 -VEEFQNWDEFSLDYLFG 451 (596)
Q Consensus 435 -v~lF~~l~~~~l~~L~~ 451 (596)
..++..++++..++++.
T Consensus 87 ~asflatl~p~LR~evL~ 104 (108)
T PF14377_consen 87 NASFLATLPPELRREVLL 104 (108)
T ss_pred HHHHHHhCCHHHHHHHhh
Confidence 23555566666555543
No 64
>PRK09108 type III secretion system protein HrcU; Validated
Probab=33.93 E-value=74 Score=33.93 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=36.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--cccccCCCHhHHHHHHHH
Q 042686 326 ETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK--HYADISRDQNVRGQFKKA 394 (596)
Q Consensus 326 i~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~lp~~L~~rv~~y 394 (596)
..+......++.++..++..+..++++-.+..+.-+...-.++++-..+++ |+++..=+|+++.|+|+-
T Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~ 242 (353)
T PRK09108 172 QSPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRL 242 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 344444555566666666666656555555555444433333333334444 455566666666666554
No 65
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=33.13 E-value=44 Score=32.51 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=28.4
Q ss_pred cccHHHHHHHHhcceeEE--eCCCCEEEecCCCcC
Q 042686 440 NWDEFSLDYLFGCLKPVV--FSERTVIIQEGDPIN 472 (596)
Q Consensus 440 ~l~~~~l~~L~~~l~~~~--~~~ge~I~~~Gd~~~ 472 (596)
..++...++......+.. +.+||.|+++|+..+
T Consensus 173 ~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 173 EATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 567778888888899988 999999999999754
No 66
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=32.48 E-value=1.3e+02 Score=26.83 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=34.4
Q ss_pred hcceeEEeCCCCEE-EecCCCcCeEEEEEeeEEEEeeecceeeecCCCCee
Q 042686 451 GCLKPVVFSERTVI-IQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHC 500 (596)
Q Consensus 451 ~~l~~~~~~~ge~I-~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~F 500 (596)
...+...++||+-+ .+.-...+++|+|++|+..+..+++. ..+++|+.+
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~-~~v~~gd~~ 85 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEE-VEVKAGDSV 85 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEE-EEecCCCEE
Confidence 34566778888885 55555579999999999988776433 334666654
No 67
>PHA03029 hypothetical protein; Provisional
Probab=31.89 E-value=2.5e+02 Score=22.68 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=27.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 042686 330 DVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQK 368 (596)
Q Consensus 330 ~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~ 368 (596)
+..|.+|-++..++=.++.-.++|-+-..+-+.++.++.
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raa 40 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAA 40 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888877777777777777777777776664443
No 68
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.36 E-value=1e+02 Score=32.97 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=31.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--cccccCCCHhHHHHHHHH
Q 042686 328 SNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK--HYADISRDQNVRGQFKKA 394 (596)
Q Consensus 328 p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~lp~~L~~rv~~y 394 (596)
+......+..++..++..+..++++-.+..+.-+...-.++++-..+++ |+++..=+|+++.|+|+-
T Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~~ 247 (359)
T PRK05702 179 LEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQL 247 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3333444555554444444444444444444433333223333333444 445555666666665553
No 69
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=28.52 E-value=1.1e+02 Score=32.69 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=32.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--cccccCCCHhHHHHHHHH
Q 042686 329 NDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK--HYADISRDQNVRGQFKKA 394 (596)
Q Consensus 329 ~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~lp~~L~~rv~~y 394 (596)
......+...+..+++.+..++++-.+....-+...-.++.+-..+++ |+++..=+|+++.|+|+-
T Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~ 240 (349)
T PRK12721 173 ACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRREL 240 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 333444555555555555555554444444433333233333333444 456666666666666654
No 70
>PRK08156 type III secretion system protein SpaS; Validated
Probab=28.50 E-value=1.1e+02 Score=32.85 Aligned_cols=64 Identities=13% Similarity=0.016 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--cccccCCCHhHHHHHHHH
Q 042686 331 VGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK--HYADISRDQNVRGQFKKA 394 (596)
Q Consensus 331 ~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~lp~~L~~rv~~y 394 (596)
....+..++..++..+.-++++-.+....-+...-.++++-..+++ |+++..=+|+++.|+|+-
T Consensus 170 ~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~ 235 (361)
T PRK08156 170 LIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREA 235 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3334444444444444444444444444333333222333333444 445566666666666554
No 71
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=28.01 E-value=1e+02 Score=33.23 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=10.2
Q ss_pred cccccCCCHhHHHHHHHH
Q 042686 377 HYADISRDQNVRGQFKKA 394 (596)
Q Consensus 377 ~~~~~~lp~~L~~rv~~y 394 (596)
|+++..=+|+++.|+|+-
T Consensus 230 E~K~~EGdP~iK~r~Rq~ 247 (386)
T PRK12468 230 EFKNQEGDPHVKGRIRQQ 247 (386)
T ss_pred HHHhccCCHHHHHHHHHH
Confidence 445555566666665543
No 72
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=26.08 E-value=1.3e+02 Score=32.07 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--cccccCCCHhHHHHHHHH
Q 042686 332 GENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK--HYADISRDQNVRGQFKKA 394 (596)
Q Consensus 332 ~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~lp~~L~~rv~~y 394 (596)
...+..++..+++.+.-++++-.+..+.-+...-.++++-..+++ |+++..=+|+++.|+|+-
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~~ 240 (347)
T TIGR00328 176 ITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 444444444444444444444344344333333222333333444 445555666666666553
No 73
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=25.96 E-value=2e+02 Score=27.04 Aligned_cols=63 Identities=8% Similarity=0.028 Sum_probs=39.1
Q ss_pred EecCCCcCeEEEEEeeEEEEeeecc---eeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechH
Q 042686 465 IQEGDPINVMTFVLQGKTWAYSKKL---SITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKAD 541 (596)
Q Consensus 465 ~~~Gd~~~~~yfI~~G~v~v~~~~~---~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~ 541 (596)
++..+ .+++|++++|.+.+...+. ....+++|++|= + +. ..+.+.++.++|..+.+.++
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fl-----v------P~------gvpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFL-----L------PP------HVPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEcCCcEEEEEECCCCEEE-----e------CC------CCCcccccCCCcEEEEEEeC
Confidence 55534 7999999999998854331 245679988885 1 11 11223344567777777765
Q ss_pred hHhh
Q 042686 542 DVKC 545 (596)
Q Consensus 542 df~~ 545 (596)
.-..
T Consensus 105 r~~~ 108 (159)
T TIGR03037 105 RPQG 108 (159)
T ss_pred CCCC
Confidence 5443
No 74
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=24.82 E-value=6.3e+02 Score=24.33 Aligned_cols=137 Identities=11% Similarity=0.052 Sum_probs=84.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc------cc--cccCCCHhHHHHHHHHHHHHH-
Q 042686 329 NDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK------HY--ADISRDQNVRGQFKKAKREKL- 399 (596)
Q Consensus 329 ~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~------~~--~~~~lp~~L~~rv~~y~~~~~- 399 (596)
.....++.++.+...|++++..+++++.-........++ ++..-+ .| .....+++--+.+-+|+-+.-
T Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~~~v~l~~~~~~~~~~---q~~vlvPp~~~~~~~vs~~~ad~~YLe~ma~~~~~L~l 82 (188)
T PRK13726 6 RLSTSRVMAIAFIFLSVLIVLSLSVNVIQGVNNYRLQNE---QRTAVTPMAFNAPFAVSQNSADASYLQQMALSFIALRL 82 (188)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---cEEEEECCcCCccEEEECCcCCHHHHHHHHHHHHHHhc
Confidence 344556777767767777777777776554443333111 111111 45 778899999999999988876
Q ss_pred --hcCCCCCcHHHHHHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEE
Q 042686 400 --TNKHVDVRIDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFV 477 (596)
Q Consensus 400 --~~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI 477 (596)
.-..++.+.+.+++-.+|.-+.+++..+. +..+++-..=-...|.|.++-+. .+..-+.
T Consensus 83 NvTP~nVd~~~~~LL~~v~p~~~~~lk~~L~---------------~~a~~Ik~~~vSs~F~~~~i~v~----~~~~~V~ 143 (188)
T PRK13726 83 NVSPETVDASHQALLQYIRPGAQNQMKVILA---------------EEAKRIKNDNVNSAFYQTSVRVW----PQYGRVD 143 (188)
T ss_pred CCChhhHHHHHHHHHhhCCHHHHHHHHHHHH---------------HHHHHHHhcCceEEEEeeeEEEc----cCCCEEE
Confidence 44445445789999999999999988872 22223333333344555555442 3455567
Q ss_pred EeeEEEEeee
Q 042686 478 LQGKTWAYSK 487 (596)
Q Consensus 478 ~~G~v~v~~~ 487 (596)
..|+..-..+
T Consensus 144 V~Gtlkt~vg 153 (188)
T PRK13726 144 IRGVLKTWIG 153 (188)
T ss_pred EEEEEEEEEC
Confidence 7888855443
No 75
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.50 E-value=1.9e+02 Score=30.91 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=13.6
Q ss_pred HHhhc--cccccCCCHhHHHHHHHHH
Q 042686 372 IRQSK--HYADISRDQNVRGQFKKAK 395 (596)
Q Consensus 372 ~~~~~--~~~~~~lp~~L~~rv~~y~ 395 (596)
..+++ ||++..=.|+++.|+|+-.
T Consensus 223 tKqEVKdE~K~sEGdPeVKsr~Rq~~ 248 (363)
T COG1377 223 TKQEVKDEYKQSEGDPEVKSRIRQMQ 248 (363)
T ss_pred cHHHHHHHHhhccCChhhhHHHHHHH
Confidence 33444 5555555666666666543
No 76
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=24.25 E-value=1.4e+02 Score=31.98 Aligned_cols=63 Identities=10% Similarity=0.106 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--cccccCCCHhHHHHHHHH
Q 042686 332 GENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK--HYADISRDQNVRGQFKKA 394 (596)
Q Consensus 332 ~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~lp~~L~~rv~~y 394 (596)
...+...+..+++.+.-++++-.+..+.-+...-.++++-..+++ |+++..=+|+++.|+|+-
T Consensus 185 ~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq~ 249 (358)
T PRK13109 185 PELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRSL 249 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 333444444444444444444444444433333222333333344 445555566666665543
No 77
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=23.87 E-value=1.5e+02 Score=31.59 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--cccccCCCHhHHHHHHHH
Q 042686 332 GENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKWQVIRQSK--HYADISRDQNVRGQFKKA 394 (596)
Q Consensus 332 ~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~lp~~L~~rv~~y 394 (596)
...++..+..+++.+..++++-.+....-+...-.++++-..+++ |+++..=+|+++.|+|+-
T Consensus 175 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~ 239 (342)
T TIGR01404 175 APIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRREL 239 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 333444444444444444444333333333222222233333344 445556666666666654
No 78
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=21.92 E-value=1.9e+02 Score=26.15 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=33.7
Q ss_pred ceeEEeCCCCEEEecCC-CcCeEEEEEeeEEEEeeecc-----eeeecCCCCeec
Q 042686 453 LKPVVFSERTVIIQEGD-PINVMTFVLQGKTWAYSKKL-----SITIQRHQDHCD 501 (596)
Q Consensus 453 l~~~~~~~ge~I~~~Gd-~~~~~yfI~~G~v~v~~~~~-----~~~~~~~G~~FG 501 (596)
+....+.||...-..-. ...++++|++|+..+...++ ......+||.+=
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 44556788887654433 36789999999998865432 245678988875
No 79
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=21.64 E-value=5.7e+02 Score=26.64 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc--cccccCCCHhHHHHHHH
Q 042686 345 VVLFVFLIGRMQTEIARSQKINQKWQVIRQSK--HYADISRDQNVRGQFKK 393 (596)
Q Consensus 345 ~~~fa~iig~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~lp~~L~~rv~~ 393 (596)
....+|+.-++....-+.....++++...+++ ||++.+=+|+++.+=|+
T Consensus 190 g~~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKskRRq 240 (349)
T COG4792 190 GVAVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSKRRQ 240 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcccCCchhhHHHHH
Confidence 33556666666555444444444444444455 55555555555554443
No 80
>PHA02909 hypothetical protein; Provisional
Probab=21.49 E-value=55 Score=24.80 Aligned_cols=42 Identities=26% Similarity=0.234 Sum_probs=27.9
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042686 319 SAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQ 363 (596)
Q Consensus 319 ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~ 363 (596)
.+|.||.-......|..|+|++ +.++|..++-+|-++++...
T Consensus 15 lsvdygngkkvyytentfcimv---sfilfviiflsmftilacsy 56 (72)
T PHA02909 15 LSVDYGNGKKVYYTENTFCIMV---SFILFVIIFLSMFTILACSY 56 (72)
T ss_pred EEEecCCCeEEEEeccchhHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6788887777777788888743 34555666666666665443
No 81
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=20.73 E-value=70 Score=34.84 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=33.1
Q ss_pred CCCeecCCchhhhhHhhccccccCCCCcccEEEEec-eEEEEEechHhHhh-hhc
Q 042686 496 HQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALT-DVEAFTLKADDVKC-ALL 548 (596)
Q Consensus 496 ~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t-~~~l~~L~~~df~~-~~~ 548 (596)
+||-|| .+ |+.... ||.+|+..-+ +|..++.++.+|+. ..+
T Consensus 1 eGddfg----kl---alvnd~-----praativl~ed~~~fl~vDk~~Fn~I~~~ 43 (573)
T KOG2378|consen 1 EGDDFG----KL---ALVNDA-----PRAATIVLREDNCHFLRVDKHDFNRILHD 43 (573)
T ss_pred CCcccc----hh---cccccc-----ccccceeeecCCCcceeecHHHHHHHHHh
Confidence 589999 57 777666 8888877666 59999999999998 543
Done!