Query 042686
Match_columns 596
No_of_seqs 276 out of 2455
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 6.3E-33 2.2E-37 293.0 13.1 180 288-555 160-340 (355)
2 3bpz_A Potassium/sodium hyperp 100.0 4.3E-29 1.5E-33 242.1 21.2 195 360-568 2-199 (202)
3 2ptm_A Hyperpolarization-activ 100.0 3E-28 1E-32 235.3 20.3 180 361-554 2-185 (198)
4 3ukn_A Novel protein similar t 100.0 7.6E-29 2.6E-33 242.1 12.8 185 356-553 1-189 (212)
5 1orq_C Potassium channel; volt 99.8 1.4E-20 4.9E-25 185.5 17.0 212 30-361 8-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 9.1E-19 3.1E-23 161.7 13.7 136 408-555 5-143 (160)
7 2r9r_B Paddle chimera voltage 99.8 1.2E-17 4.3E-22 183.7 18.1 238 23-365 174-434 (514)
8 3ocp_A PRKG1 protein; serine/t 99.7 3.1E-17 1.1E-21 148.3 10.8 128 414-553 7-135 (139)
9 2pqq_A Putative transcriptiona 99.7 8.1E-16 2.8E-20 139.7 14.8 139 429-579 4-148 (149)
10 3mdp_A Cyclic nucleotide-bindi 99.6 1.5E-15 5E-20 137.0 12.4 113 429-553 5-126 (142)
11 3dn7_A Cyclic nucleotide bindi 99.6 3.2E-15 1.1E-19 142.7 14.2 144 428-582 5-154 (194)
12 3gyd_A CNMP-BD protein, cyclic 99.6 1.3E-14 4.5E-19 138.4 17.5 135 407-553 12-156 (187)
13 1vp6_A CNBD, cyclic-nucleotide 99.6 5.7E-15 2E-19 132.7 12.9 113 428-554 9-122 (138)
14 3pna_A CAMP-dependent protein 99.6 6.9E-15 2.4E-19 135.4 12.6 115 426-552 34-149 (154)
15 3idb_B CAMP-dependent protein 99.6 9E-15 3.1E-19 135.5 12.6 119 422-552 30-153 (161)
16 2z69_A DNR protein; beta barre 99.6 1.1E-14 3.7E-19 133.1 12.5 114 429-554 11-131 (154)
17 4ev0_A Transcription regulator 99.6 8.4E-15 2.9E-19 141.9 12.4 111 432-554 1-117 (216)
18 3fx3_A Cyclic nucleotide-bindi 99.6 1.6E-14 5.6E-19 142.2 14.4 142 426-579 7-154 (237)
19 3shr_A CGMP-dependent protein 99.6 5.2E-15 1.8E-19 151.3 10.3 131 410-552 19-150 (299)
20 3d0s_A Transcriptional regulat 99.6 1.1E-14 3.8E-19 142.5 11.5 135 429-575 5-145 (227)
21 1zyb_A Transcription regulator 99.6 3.8E-14 1.3E-18 139.6 14.8 139 429-579 17-164 (232)
22 3dv8_A Transcriptional regulat 99.5 3.1E-14 1.1E-18 138.3 13.7 136 430-577 3-146 (220)
23 2d93_A RAP guanine nucleotide 99.5 3.2E-15 1.1E-19 134.2 5.6 122 418-551 4-128 (134)
24 2gau_A Transcriptional regulat 99.5 5.8E-14 2E-18 137.8 12.9 128 433-572 13-146 (232)
25 3of1_A CAMP-dependent protein 99.5 9.5E-14 3.2E-18 137.0 14.1 113 428-552 5-118 (246)
26 3shr_A CGMP-dependent protein 99.5 1.8E-13 6.3E-18 139.7 16.3 129 426-566 153-289 (299)
27 3e97_A Transcriptional regulat 99.5 8.6E-14 2.9E-18 136.5 13.3 114 429-554 5-124 (231)
28 2a9h_A Voltage-gated potassium 99.5 3.3E-14 1.1E-18 131.5 9.5 62 288-366 83-144 (155)
29 3dkw_A DNR protein; CRP-FNR, H 99.5 2.7E-14 9.2E-19 139.5 9.4 113 429-553 8-127 (227)
30 4ava_A Lysine acetyltransferas 99.5 1.7E-13 5.9E-18 142.3 15.2 121 429-562 12-138 (333)
31 3iwz_A CAP-like, catabolite ac 99.5 1.4E-13 4.8E-18 134.6 13.4 115 429-554 10-135 (230)
32 1wgp_A Probable cyclic nucleot 99.5 4.7E-14 1.6E-18 126.7 8.5 116 430-552 6-132 (137)
33 3of1_A CAMP-dependent protein 99.5 2.2E-13 7.6E-18 134.3 12.9 115 426-552 121-237 (246)
34 2qcs_B CAMP-dependent protein 99.5 4.2E-13 1.4E-17 136.3 13.8 116 425-552 34-150 (291)
35 2ih3_C Voltage-gated potassium 99.4 4.2E-13 1.4E-17 119.3 11.2 59 289-364 61-119 (122)
36 4din_B CAMP-dependent protein 99.4 3.4E-13 1.2E-17 143.3 10.5 116 425-552 125-241 (381)
37 2qcs_B CAMP-dependent protein 99.4 2.5E-12 8.6E-17 130.5 15.0 115 426-552 153-274 (291)
38 3ryp_A Catabolite gene activat 99.4 1.7E-12 5.7E-17 125.1 12.7 108 436-554 2-115 (210)
39 2fmy_A COOA, carbon monoxide o 99.4 4.3E-13 1.5E-17 130.6 8.5 121 430-569 4-129 (220)
40 3tnp_B CAMP-dependent protein 99.4 1.3E-12 4.5E-17 140.4 12.7 116 424-551 139-259 (416)
41 3vou_A ION transport 2 domain 99.4 3.8E-12 1.3E-16 117.0 12.7 84 290-390 53-148 (148)
42 1ft9_A Carbon monoxide oxidati 99.4 5.9E-13 2E-17 129.9 7.7 105 431-554 1-110 (222)
43 1o7f_A CAMP-dependent RAP1 gua 99.4 2E-12 6.7E-17 140.7 12.1 125 415-552 27-159 (469)
44 2oz6_A Virulence factor regula 99.3 5.2E-12 1.8E-16 121.3 12.9 106 441-554 1-112 (207)
45 3tnp_B CAMP-dependent protein 99.3 2.5E-12 8.4E-17 138.3 11.7 113 428-552 265-389 (416)
46 4h33_A LMO2059 protein; bilaye 99.3 4.4E-13 1.5E-17 121.5 4.3 89 290-396 44-135 (137)
47 1o7f_A CAMP-dependent RAP1 gua 99.3 4.1E-12 1.4E-16 138.1 12.5 115 426-552 333-451 (469)
48 3kcc_A Catabolite gene activat 99.3 8.9E-12 3.1E-16 124.9 12.6 105 439-554 55-165 (260)
49 4din_B CAMP-dependent protein 99.3 4.4E-12 1.5E-16 134.7 10.0 115 426-552 244-365 (381)
50 1o5l_A Transcriptional regulat 99.3 7.2E-12 2.5E-16 121.5 10.7 134 435-580 4-144 (213)
51 4f7z_A RAP guanine nucleotide 99.3 6.1E-12 2.1E-16 149.6 11.3 128 410-551 23-158 (999)
52 3cf6_E RAP guanine nucleotide 99.2 2.1E-11 7.3E-16 138.7 12.6 130 410-552 13-146 (694)
53 3la7_A Global nitrogen regulat 99.2 7.5E-11 2.6E-15 116.8 12.6 120 443-574 30-160 (243)
54 3e6c_C CPRK, cyclic nucleotide 99.2 4.1E-11 1.4E-15 119.0 9.3 134 432-580 11-150 (250)
55 4f7z_A RAP guanine nucleotide 99.2 8.6E-11 3E-15 139.7 12.7 109 427-547 334-446 (999)
56 3eff_K Voltage-gated potassium 99.2 8.1E-11 2.8E-15 106.9 9.2 59 289-364 40-98 (139)
57 2bgc_A PRFA; bacterial infecti 99.1 1.3E-10 4.6E-15 114.5 11.3 103 439-554 2-115 (238)
58 2q67_A Potassium channel prote 99.1 1E-09 3.4E-14 96.1 11.5 58 290-364 50-107 (114)
59 3b02_A Transcriptional regulat 99.0 1.7E-09 5.9E-14 103.0 11.1 76 456-544 2-82 (195)
60 2k1e_A Water soluble analogue 99.0 1.6E-10 5.6E-15 99.3 3.3 59 289-364 40-98 (103)
61 3ldc_A Calcium-gated potassium 98.9 2.2E-09 7.6E-14 88.2 7.6 53 290-359 29-81 (82)
62 3ouf_A Potassium channel prote 98.9 2.7E-09 9.3E-14 90.5 7.9 56 290-362 33-88 (97)
63 2zcw_A TTHA1359, transcription 98.8 4.7E-09 1.6E-13 100.4 8.1 82 449-544 1-89 (202)
64 3rvy_A ION transport protein; 98.8 8.3E-09 2.8E-13 104.9 9.6 60 288-364 179-244 (285)
65 3pjs_K KCSA, voltage-gated pot 98.8 1.6E-10 5.3E-15 108.3 -3.9 62 289-367 67-128 (166)
66 1xl4_A Inward rectifier potass 98.7 4.9E-08 1.7E-12 99.7 9.7 55 289-360 82-136 (301)
67 1p7b_A Integral membrane chann 98.6 3.2E-08 1.1E-12 102.2 6.2 56 290-362 97-152 (333)
68 3um7_A Potassium channel subfa 98.5 2.9E-07 9.8E-12 93.8 9.4 58 289-363 115-172 (309)
69 2qks_A KIR3.1-prokaryotic KIR 98.4 3.9E-07 1.3E-11 93.8 7.7 57 289-362 78-134 (321)
70 3ukm_A Potassium channel subfa 98.2 1.6E-06 5.6E-11 87.0 8.1 56 289-361 93-148 (280)
71 3um7_A Potassium channel subfa 98.2 4.9E-07 1.7E-11 92.1 2.9 58 290-364 225-288 (309)
72 4gx0_A TRKA domain protein; me 98.2 5.5E-06 1.9E-10 92.1 10.9 54 290-360 52-106 (565)
73 3sya_A G protein-activated inw 98.2 5.7E-06 2E-10 85.3 9.9 56 290-362 92-149 (340)
74 3ukm_A Potassium channel subfa 98.1 2.7E-06 9.2E-11 85.4 5.5 55 290-361 202-263 (280)
75 3spc_A Inward-rectifier K+ cha 98.0 1E-05 3.5E-10 83.5 9.3 55 290-361 95-151 (343)
76 1lnq_A MTHK channels, potassiu 97.9 6.1E-07 2.1E-11 93.1 -2.3 56 291-363 47-102 (336)
77 4dxw_A Navrh, ION transport pr 97.4 0.00083 2.8E-08 65.4 11.6 76 30-137 12-88 (229)
78 1ors_C Potassium channel; volt 96.2 0.0087 3E-07 53.1 6.7 107 30-180 6-112 (132)
79 2kyh_A KVAP, voltage-gated pot 95.9 0.015 5.1E-07 52.6 6.9 77 31-139 22-98 (147)
80 3fjs_A Uncharacterized protein 60.3 42 0.0014 27.8 8.8 48 453-501 38-85 (114)
81 3rns_A Cupin 2 conserved barre 60.2 34 0.0012 32.3 9.1 68 453-538 39-106 (227)
82 2ozj_A Cupin 2, conserved barr 53.9 58 0.002 26.5 8.6 44 457-501 44-87 (114)
83 3lwc_A Uncharacterized protein 49.0 44 0.0015 28.1 7.0 45 455-501 44-88 (119)
84 1o5u_A Novel thermotoga mariti 47.6 50 0.0017 26.9 7.0 46 454-501 34-79 (101)
85 1yhf_A Hypothetical protein SP 46.0 1E+02 0.0034 24.8 8.8 48 453-501 42-89 (115)
86 3h8u_A Uncharacterized conserv 41.5 36 0.0012 28.3 5.3 49 453-501 41-90 (125)
87 2fqp_A Hypothetical protein BP 40.9 23 0.00077 28.4 3.7 48 454-501 21-70 (97)
88 2pfw_A Cupin 2, conserved barr 40.9 1.3E+02 0.0045 24.1 8.8 48 453-501 36-83 (116)
89 2l53_B CAM, voltage-gated sodi 39.5 25 0.00085 22.6 2.8 20 553-572 5-24 (31)
90 4e2g_A Cupin 2 conserved barre 38.8 55 0.0019 27.1 6.1 48 453-501 43-90 (126)
91 2kxw_B Sodium channel protein 37.7 28 0.00095 21.6 2.8 19 553-571 5-23 (27)
92 3bcw_A Uncharacterized protein 35.9 25 0.00085 30.0 3.3 43 458-501 56-98 (123)
93 2b8m_A Hypothetical protein MJ 35.4 38 0.0013 27.8 4.4 46 456-501 32-77 (117)
94 2gu9_A Tetracenomycin polyketi 34.8 67 0.0023 25.7 5.8 48 453-501 23-73 (113)
95 3es1_A Cupin 2, conserved barr 33.8 43 0.0015 30.5 4.7 49 453-502 81-129 (172)
96 3kg2_A Glutamate receptor 2; I 32.6 55 0.0019 36.9 6.5 55 289-361 563-617 (823)
97 3es4_A Uncharacterized protein 32.5 35 0.0012 29.0 3.6 43 458-501 49-91 (116)
98 2f4p_A Hypothetical protein TM 32.2 66 0.0023 27.9 5.6 48 454-501 51-98 (147)
99 2i45_A Hypothetical protein; n 32.1 43 0.0015 27.0 4.1 69 458-543 35-103 (107)
100 1v70_A Probable antibiotics sy 31.5 1E+02 0.0035 23.9 6.4 47 454-501 31-78 (105)
101 2pyt_A Ethanolamine utilizatio 31.2 48 0.0016 28.5 4.4 44 455-501 61-104 (133)
102 4b29_A Dimethylsulfoniopropion 31.0 71 0.0024 30.2 5.8 45 457-501 138-182 (217)
103 3d0j_A Uncharacterized protein 29.8 1.6E+02 0.0056 25.7 7.5 60 465-541 44-110 (140)
104 2opk_A Hypothetical protein; p 29.3 42 0.0014 27.7 3.6 33 469-501 51-84 (112)
105 1orq_C Potassium channel; volt 29.1 96 0.0033 28.8 6.6 14 162-175 102-115 (223)
106 3ibm_A Cupin 2, conserved barr 27.6 88 0.003 27.9 5.8 47 454-501 59-105 (167)
107 1dgw_A Canavalin; duplicated s 26.4 73 0.0025 28.8 5.0 49 453-501 43-94 (178)
108 2q30_A Uncharacterized protein 26.3 1.3E+02 0.0044 23.8 6.2 48 454-501 36-85 (110)
109 2bnm_A Epoxidase; oxidoreducta 25.8 71 0.0024 28.9 4.9 46 456-501 122-173 (198)
110 3rns_A Cupin 2 conserved barre 25.7 2E+02 0.0068 26.8 8.2 48 453-501 155-202 (227)
111 3l2h_A Putative sugar phosphat 24.2 69 0.0024 28.0 4.3 47 454-501 49-97 (162)
112 2vpv_A Protein MIF2, MIF2P; nu 24.1 57 0.002 29.5 3.7 32 469-501 108-139 (166)
113 3i7d_A Sugar phosphate isomera 23.4 82 0.0028 27.9 4.7 47 454-501 46-94 (163)
114 1zvf_A 3-hydroxyanthranilate 3 22.5 64 0.0022 29.4 3.6 110 444-570 12-162 (176)
115 1y9q_A Transcriptional regulat 22.1 1.4E+02 0.0048 26.8 6.1 46 455-501 108-155 (192)
116 2qjv_A Uncharacterized IOLB-li 21.4 2.5E+02 0.0086 27.3 7.9 86 451-545 29-115 (270)
117 1yfu_A 3-hydroxyanthranilate-3 21.2 86 0.0029 28.5 4.2 32 470-501 54-88 (174)
118 1sfn_A Conserved hypothetical 20.9 1.1E+02 0.0038 29.1 5.3 50 451-501 165-215 (246)
119 3d82_A Cupin 2, conserved barr 20.7 1.8E+02 0.0062 22.5 5.9 52 471-540 50-101 (102)
120 1vj2_A Novel manganese-contain 20.2 1.1E+02 0.0037 25.4 4.6 46 455-501 52-97 (126)
121 3jzv_A Uncharacterized protein 20.0 96 0.0033 27.7 4.4 45 456-501 58-102 (166)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.98 E-value=6.3e-33 Score=293.02 Aligned_cols=180 Identities=18% Similarity=0.197 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042686 288 KKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQ 367 (596)
Q Consensus 288 ~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~ 367 (596)
..|..|+||+++|| ||+||||++|.|..++++++++|+.|.+++++.+|.+++.+.+..++
T Consensus 160 ~~~~~s~y~~~~t~-----------------ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~-- 220 (355)
T 3beh_A 160 GSIPQAMWWAVVTL-----------------STTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR-- 220 (355)
T ss_dssp SSHHHHHHHHHHHH-----------------TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccHHHHHHHHHhhe-----------------eecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 35889999999999 99999999999999999999999999999999999987765431110
Q ss_pred HHHHHHhhccccccCCCHhHHHHHHHHHHHHHhcCCCCCcHHHHHHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHH
Q 042686 368 KWQVIRQSKHYADISRDQNVRGQFKKAKREKLTNKHVDVRIDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLD 447 (596)
Q Consensus 368 ~~~~~~~~~~~~~~~lp~~L~~rv~~y~~~~~~~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~ 447 (596)
+++. .+.+.++++|+|+++++++++
T Consensus 221 ------------------------~~~~-------------------------------~~~~~l~~~~lf~~ls~~~l~ 245 (355)
T 3beh_A 221 ------------------------GDFV-------------------------------RNWQLVAAVPLFQKLGPAVLV 245 (355)
T ss_dssp ------------------------HHHH-------------------------------HHHC-----------------
T ss_pred ------------------------Hhhc-------------------------------ccchhhhcccccccCCHHHHH
Confidence 0000 024568889999999999999
Q ss_pred HHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEE
Q 042686 448 YLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTV 527 (596)
Q Consensus 448 ~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv 527 (596)
+++..++++.|+|||.|+++||+++++|+|.+|.+++...+ ....++|++|| |. ++..+. ++++++
T Consensus 246 ~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~l~~G~~fG----e~---~~l~~~-----~~~~~~ 311 (355)
T 3beh_A 246 EIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFG----EM---ALISGE-----PRSATV 311 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC--eeEECCCCEEe----eh---HHhCCC-----CcceEE
Confidence 99999999999999999999999999999999999887765 34679999999 56 777766 889999
Q ss_pred EEeceEEEEEechHhHhh-hhcCcchhHH
Q 042686 528 RALTDVEAFTLKADDVKC-ALLFRPVSKE 555 (596)
Q Consensus 528 ~A~t~~~l~~L~~~df~~-~~~f~~~~k~ 555 (596)
+|.++|+++.+++++|.+ ..++|++.+.
T Consensus 312 ~A~~~~~l~~i~~~~f~~ll~~~p~~~~~ 340 (355)
T 3beh_A 312 SAATTVSLLSLHSADFQMLCSSSPEIAEI 340 (355)
T ss_dssp -----------------------------
T ss_pred EECccEEEEEEeHHHHHHHHHHCHHHHHH
Confidence 999999999999999999 9999988543
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.96 E-value=4.3e-29 Score=242.12 Aligned_cols=195 Identities=16% Similarity=0.124 Sum_probs=171.1
Q ss_pred HHhHHHHHHHHHHHhhc-cc-cccCCCHhHHHHHHHHHHHHHhcCCCCCcHHHHHHhcCHHHHHHHHHHHHHHHhhcchh
Q 042686 360 ARSQKINQKWQVIRQSK-HY-ADISRDQNVRGQFKKAKREKLTNKHVDVRIDSFISDLSLDAEKEVKRHMGRKLLRKVEE 437 (596)
Q Consensus 360 ~~~~~~~~~~~~~~~~~-~~-~~~~lp~~L~~rv~~y~~~~~~~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~L~~v~l 437 (596)
++++++.++++++++.+ +| +.+++|++||.||++||+|.|+.++. +++++++.||+.||.++..+.+.+.++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~--~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~ 79 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMF--DEDSILGELNGPLREKIVNFNCRKLVASMPL 79 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCC--CHHHHHHHSCHHHHHHHHHHHTHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCC--CHHHHHHHcCHHHHHHHHHHHHHHHHhcCCc
Confidence 35677888999999999 99 99999999999999999999965777 9999999999999999999999999999999
Q ss_pred hccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhhhhHhhccccc
Q 042686 438 FQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKELIDWAKNENSY 517 (596)
Q Consensus 438 F~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel~~~al~~~~~ 517 (596)
|++++++++..++..++++.|+||++|+++||+++.+|||.+|.|+++..+.....+++|++|| |. +++.+.
T Consensus 80 f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fG----e~---~~~~~~- 151 (202)
T 3bpz_A 80 FANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFG----EI---CLLTRG- 151 (202)
T ss_dssp HHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEEC----HH---HHHHCS-
T ss_pred hhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCEec----cH---HHhcCC-
Confidence 9999999999999999999999999999999999999999999999987653444679999999 57 777776
Q ss_pred cCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHH
Q 042686 518 QQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKK 568 (596)
Q Consensus 518 ~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~ 568 (596)
+++++++|.++|+++.|++++|.. +.++|++.+.....+..-.+...
T Consensus 152 ----~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~~~ 199 (202)
T 3bpz_A 152 ----RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIG 199 (202)
T ss_dssp ----BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHHC-
T ss_pred ----CcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999 99999986544444333333333
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.96 E-value=3e-28 Score=235.31 Aligned_cols=180 Identities=16% Similarity=0.117 Sum_probs=165.9
Q ss_pred HhHHHHHHHHHHHhhc-cc-cccCCCHhHHHHHHHHHHHHHhcCCCCCcHHHHHHhcCHHHHHHHHHHHHHHHhhcchhh
Q 042686 361 RSQKINQKWQVIRQSK-HY-ADISRDQNVRGQFKKAKREKLTNKHVDVRIDSFISDLSLDAEKEVKRHMGRKLLRKVEEF 438 (596)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~~-~~~~lp~~L~~rv~~y~~~~~~~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF 438 (596)
+++++.++++++++.+ +| +.+++|++||.||++||+|.|+.++. +++++++.||+.||.++..+++.+.++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~--~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f 79 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMF--DERHIFREVSESIRQDVANYNCRDLVASVPFF 79 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCC--CSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCC--CHHHHHHHcCHHHHHHHHHHHHHHHHhcCcch
Confidence 5677788899999999 99 99999999999999999999966777 89999999999999999999999999999999
Q ss_pred ccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-ceeeecCCCCeecCCchhhhhHhhccccc
Q 042686 439 QNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-LSITIQRHQDHCDVRRKELIDWAKNENSY 517 (596)
Q Consensus 439 ~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-~~~~~~~~G~~FG~~~eel~~~al~~~~~ 517 (596)
++++++++..++..++++.|+|||+|+++||.++.+|||.+|.|+++..+ +.+...++|++|| |. +++.+.
T Consensus 80 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fG----e~---~~~~~~- 151 (198)
T 2ptm_A 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFG----EI---CLLTRE- 151 (198)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEES----CH---HHHHSS-
T ss_pred hcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEec----hH---HHcCCC-
Confidence 99999999999999999999999999999999999999999999998643 5667789999999 56 777776
Q ss_pred cCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH
Q 042686 518 QQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 518 ~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k 554 (596)
+++++++|.++|+++.|++++|.. +.++|++.+
T Consensus 152 ----~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 185 (198)
T 2ptm_A 152 ----RRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRK 185 (198)
T ss_dssp ----CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred ----ccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHH
Confidence 899999999999999999999999 999998743
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.96 E-value=7.6e-29 Score=242.06 Aligned_cols=185 Identities=12% Similarity=0.178 Sum_probs=160.6
Q ss_pred HHHHHHhHHHHHHHHHHHhhc-cc-cccCCCHhHHHHHHHHHHHHH-hcCCCCCcHHHHHHhcCHHHHHHHHHHHHHHHh
Q 042686 356 QTEIARSQKINQKWQVIRQSK-HY-ADISRDQNVRGQFKKAKREKL-TNKHVDVRIDSFISDLSLDAEKEVKRHMGRKLL 432 (596)
Q Consensus 356 ~~~i~~~~~~~~~~~~~~~~~-~~-~~~~lp~~L~~rv~~y~~~~~-~~~~~~~~e~~il~~Lp~~Lr~~i~~~l~~~~L 432 (596)
++++++++++.+++++++..+ +| +.+++|++||.||++||+|.| .+++. +++++++.||+.||.++..+++..++
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~--~~~~il~~Lp~~L~~~i~~~~~~~l~ 78 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGI--DVSELLKDFPDELRADIAMHLNKELL 78 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGC--CCCCTTTTSCHHHHHHHHTTCCCGGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 467889999999999999999 99 999999999999999999999 78888 88999999999999999999998877
Q ss_pred hcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhhhhHhh
Q 042686 433 RKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKELIDWAK 512 (596)
Q Consensus 433 ~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel~~~al 512 (596)
++|+|++++++++..++..++++.|+|||+|+++||.++.+|||.+|.|+++..+..+...++|++|| |. ++
T Consensus 79 -~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fG----e~---~~ 150 (212)
T 3ukn_A 79 -QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIG----SD---SL 150 (212)
T ss_dssp -GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEE----CS---CC
T ss_pred -hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCCCCcC----cH---Hh
Confidence 89999999999999999999999999999999999999999999999999998777778889999999 46 55
Q ss_pred ccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchh
Q 042686 513 NENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVS 553 (596)
Q Consensus 513 ~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~ 553 (596)
+.+. ..+++++++|.++|+++.|++++|.. +.++|++.
T Consensus 151 ~~~~---~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~ 189 (212)
T 3ukn_A 151 TKEQ---VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYA 189 (212)
T ss_dssp SSSS---CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred ccCC---CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHH
Confidence 5432 01688999999999999999999999 99999873
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.85 E-value=1.4e-20 Score=185.46 Aligned_cols=212 Identities=14% Similarity=0.177 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHHhhcccccccCcchhhhhhcc
Q 042686 30 RLMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISHSKLHMEKGNQREKFKAIF 109 (596)
Q Consensus 30 ~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~y~~~~~~~~~~~~~ 109 (596)
..||.+++++++++.+.+++... ...+......+..+|.++|++|.+|++++|.++..
T Consensus 8 ~~f~~~i~~lil~~~~~~~~~~~----------~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~------------ 65 (223)
T 1orq_C 8 PLVELGVSYAALLSVIVVVVECT----------MQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD------------ 65 (223)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH----------HHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSC------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHh----------cccChhhhhHHHHHHHHHHHHHHHHHHHHHccccc------------
Confidence 45999999999998887766511 01222234567889999999999999999998632
Q ss_pred cCCCccccChhHHhhhhhhhhhhhccchhhhhhhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhh
Q 042686 110 KGEGEVPEDPMGRMRKLFLIDCLAILPIPQVLVIFLVIFGIRGPGFSTAMTFFVLQYSLRVIRTYFLFTHATRVSGILAD 189 (596)
Q Consensus 110 ~~~g~~V~d~~~Ia~~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rl~Rl~Rl~~l~~~~~~~~~~~~~ 189 (596)
+++-.++ +++|++|++|++.... . ...... ... ++.+|++|++|+.|+.+...+..+.+..
T Consensus 66 ---------~~~y~~~-~iiDllailP~~~~~~-~--~~~~~~---~~~---lr~lRllRllR~~r~~~~~~~~~~~l~~ 126 (223)
T 1orq_C 66 ---------PAGYVKK-TLYEIPALVPAGLLAL-I--EGHLAG---LGL---FRLVRLLRFLRILLIISRGSKFLSAIAD 126 (223)
T ss_dssp ---------HHHHHHH-HHHHCTTHHHHHHHHH-H--HHHHHT---TTC---HHHHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred ---------HHHHHHH-hHHHHHHHHHHHHHHH-H--hcchhH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222224 8999999999976532 0 000000 111 3444555555555554422221111111
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhhhcCCCCCCccccccCCCCCCCccccccccccCCCCCccc
Q 042686 190 ATW-AIFAFYLLLYLQSGHMFGALWYYYAIEKATECWREACKNHTGCSGHSYFSCNKSSRDYNFLNDFCRISTGSTTSYS 268 (596)
Q Consensus 190 ~~~-~~~~~~ll~~~l~~H~~ac~Wy~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~ 268 (596)
... .++...++.+++..|+.||+||.+. .. .
T Consensus 127 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~e---------------------------~~-~-------------------- 158 (223)
T 1orq_C 127 AADKIRFYHLFGAVMLTVLYGAFAIYIVE---------------------------YP-D-------------------- 158 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------SS-S--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hC-C--------------------
Confidence 110 1333444455567788888776421 00 0
Q ss_pred cccchhhhccCccCCCChhHHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 042686 269 FGIYNDALQSGIVGETDFPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLF 348 (596)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~f 348 (596)
.++....|..|+||+++|| ||+||||++|.|..+++++++.|+.|..++
T Consensus 159 --------------~~~~~~~~~~s~y~~~~t~-----------------tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~ 207 (223)
T 1orq_C 159 --------------PNSSIKSVFDALWWAVVTA-----------------TTVGYGDVVPATPIGKVIGIAVMLTGISAL 207 (223)
T ss_dssp --------------TTCSCCSHHHHHHHHHHHH-----------------TTCCCCSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred --------------cCCCcCcchhHHHhHHhHH-----------------hccCCCCCCCCCHhHHHHHHHHHHHHHHHH
Confidence 0112235889999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 042686 349 VFLIGRMQTEIAR 361 (596)
Q Consensus 349 a~iig~i~~~i~~ 361 (596)
|+.+|.+++.+++
T Consensus 208 ~~~i~~i~~~~~~ 220 (223)
T 1orq_C 208 TLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.78 E-value=9.1e-19 Score=161.73 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=116.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeee
Q 042686 408 IDSFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSK 487 (596)
Q Consensus 408 e~~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~ 487 (596)
.+++++.||+.||.++..+++.+.++++|+|++++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.++++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cceeeecCCCCeecCCchhhhhHhhccc--cccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHH
Q 042686 488 KLSITIQRHQDHCDVRRKELIDWAKNEN--SYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKE 555 (596)
Q Consensus 488 ~~~~~~~~~G~~FG~~~eel~~~al~~~--~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~ 555 (596)
+......++|++|| +. +++.+ . +++++++|.++|+++.|++++|.. ..++|.+.+.
T Consensus 85 ~~~~~~~~~G~~fG----~~---~~~~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~ 143 (160)
T 4f8a_A 85 DEVVAILGKGDVFG----DV---FWKEATLA-----QSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHS 143 (160)
T ss_dssp TEEEEEEETTCEEE----CC---TTTCSSCC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHH
T ss_pred CEEEEEecCCCEeC----cH---HHhcCccc-----ceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHH
Confidence 67778889999999 46 66654 4 889999999999999999999999 9999987543
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.75 E-value=1.2e-17 Score=183.67 Aligned_cols=238 Identities=11% Similarity=0.131 Sum_probs=144.5
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHHHHhcceeeeeeecCCc-c---e-----------ee--ecCCCcchhhhHHHHHHHHH
Q 042686 23 KDK-EYIDRLMNVTAMILDVTAIILDPLFFYILVLDDEK-K---C-----------IH--WDKTLGITATVIRSVLDFLK 84 (596)
Q Consensus 23 ~P~-s~~~~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~-~---~-----------~~--f~~~~~~~~~~~~~~~D~~f 84 (596)
+|. |...++++.+++++++.+++...+.- .|...... . + .. ........+.++|.+++++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLET-LPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhc-cccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 465 67889999999999998887766541 11111000 0 0 00 00112345788999999999
Q ss_pred HHHHHhhcccccccCcchhhhhhcccCCCccccChhHHhhhhhhhhhhhccchhhhhhhhhhhccCCCCCc--hhHHHHH
Q 042686 85 LGHFISHSKLHMEKGNQREKFKAIFKGEGEVPEDPMGRMRKLFLIDCLAILPIPQVLVIFLVIFGIRGPGF--STAMTFF 162 (596)
Q Consensus 85 ~~Di~l~f~t~y~~~~~~~~~~~~~~~~g~~V~d~~~Ia~~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~--~~~~~~~ 162 (596)
.+|+++++.++-. ......+ .|.++|+++++|+..... .+...+++. .....++
T Consensus 253 tiE~ilR~~~~~~--------------k~~Y~ks------~wniiDli~iip~~i~l~----~~~~~~~~~~~~~~~~~l 308 (514)
T 2r9r_B 253 SFEFLVRFFACPS--------------KAGFFTN------IMNIIDIVAIIPYYVTIF----LTESNKSVLQFQNVRRVV 308 (514)
T ss_dssp HHHHHHHHHHSSC--------------SSSSTTS------HHHHHHHHTTHHHHHHHH----HHHTSCSHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCc--------------HHHHHhc------hhHHHHHHHHHHHHHHHH----hhhccccchhhhhHHHHH
Confidence 9999999986421 1112222 799999999999865433 222211111 1112234
Q ss_pred HHHHHHHHHHHHHhHhhhhhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHhhhcCCCCCCcc
Q 042686 163 VLQYSLRVIRTYFLFTHATRVS---GILADATWAIFAFYLLLYLQSGHMFGALWYYYAIEKATECWREACKNHTGCSGHS 239 (596)
Q Consensus 163 ~~~rl~Rl~Rl~~l~~~~~~~~---~~~~~~~~~~~~~~ll~~~l~~H~~ac~Wy~~~~~~~~~~~~~~~~~~~~C~~~~ 239 (596)
+.+|++|++|++|+.++..... ..+..+.. .+..+++++++..+++|+++|+..
T Consensus 309 rvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~-~l~~ll~~l~i~~~if~~~~~~~e---------------------- 365 (514)
T 2r9r_B 309 QIFRIMRILRIFKLSRHSKGLQILGQTLKASMR-ELGLLIFFLFIGVILFSSAVYFAE---------------------- 365 (514)
T ss_dssp HHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhheee----------------------
Confidence 4555555555555554332211 11111111 122222333444566776655321
Q ss_pred ccccCCCCCCCccccccccccCCCCCccccccchhhhccCccCCCChhHHHHHHHHHHHhhhhhhHHHHHHhhhhccccc
Q 042686 240 YFSCNKSSRDYNFLNDFCRISTGSTTSYSFGIYNDALQSGIVGETDFPKKLIRCLRWGLQNLRFAVFYMAWIMITVHVIS 319 (596)
Q Consensus 240 ~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~t 319 (596)
. |. ..+....|..|+||++.|| |
T Consensus 366 -----~------~~-----------------------------~~~~F~s~~~a~y~~~vT~-----------------T 388 (514)
T 2r9r_B 366 -----A------DE-----------------------------RDSQFPSIPDAFWWAVVSM-----------------T 388 (514)
T ss_dssp -----T------TC-----------------------------TTCSCSSHHHHHHHHHHHH-----------------T
T ss_pred -----c------cC-----------------------------CCccccchhhhhheeeeEE-----------------E
Confidence 0 00 1112334778999999999 9
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042686 320 AFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKI 365 (596)
Q Consensus 320 tvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~ 365 (596)
|+||||+.|.+..++++++++|++|.+++++.+|.+.+.++....+
T Consensus 389 TvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~ 434 (514)
T 2r9r_B 389 TVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 434 (514)
T ss_dssp TCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877766553
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.71 E-value=3.1e-17 Score=148.26 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=114.3
Q ss_pred hcCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeee
Q 042686 414 DLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITI 493 (596)
Q Consensus 414 ~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~ 493 (596)
++|+.+|.+...+...+.++++++|++++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|++..+++.+..
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~~~ 86 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCT 86 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCEEEEE
Confidence 57888888888888999999999999999999999999999999999999999999999999999999999877677778
Q ss_pred cCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchh
Q 042686 494 QRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVS 553 (596)
Q Consensus 494 ~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~ 553 (596)
.++|++|| |. +++.+. +++++++|.++|+++.|++++|.. +.++|.+.
T Consensus 87 ~~~G~~fG----e~---~~l~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 135 (139)
T 3ocp_A 87 MGPGKVFG----EL---AILYNC-----TRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIK 135 (139)
T ss_dssp ECTTCEES----CH---HHHHCC-----CCSSEEEESSCEEEEEEEHHHHHHHHTC-----
T ss_pred eCCCCEec----cH---HHHCCC-----CcceEEEECcceEEEEEcHHHHHHHHhhChHhh
Confidence 89999999 57 666666 899999999999999999999999 98898763
No 9
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.67 E-value=8.1e-16 Score=139.74 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=119.5
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCC
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVR 503 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~ 503 (596)
.+.++++|+|++++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.++++..+ ..+...++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G-- 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIG-- 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEES--
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEec--
Confidence 456899999999999999999999999999999999999999999999999999997642 2456679999999
Q ss_pred chhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhhccccCCC
Q 042686 504 RKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRANDKNAKP 579 (596)
Q Consensus 504 ~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~~~~~~~~ 579 (596)
+. +++.+. ++.++++|.++|+++.|++++|.. ..++|++.+.....+....+...+|...+.+.++
T Consensus 82 --~~---~~~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 148 (149)
T 2pqq_A 82 --EL---SLFDPG-----PRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKTNDAMSDLVFSDG 148 (149)
T ss_dssp --GG---GGTSCE-----ECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHHHTTC--CCCCSC
T ss_pred --hH---HhcCCC-----CcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 56 777666 889999999999999999999999 9999999776666777777778888777766654
No 10
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.63 E-value=1.5e-15 Score=137.02 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=100.6
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ce---eeecCCCCee
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LS---ITIQRHQDHC 500 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~---~~~~~~G~~F 500 (596)
.+.++++|+|++++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.++++... .. +...++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 356899999999999999999999999999999999999999999999999999997632 23 5667999999
Q ss_pred cCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchh
Q 042686 501 DVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVS 553 (596)
Q Consensus 501 G~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~ 553 (596)
| +. +++.+. +++++++|.++|+++.|++++|.. ..++|.+.
T Consensus 85 G----~~---~~~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~ 126 (142)
T 3mdp_A 85 G----VS---SLIKPY-----HYTSSARATKPVRVVDINGARLREMSENNQALG 126 (142)
T ss_dssp C----GG---GSSTTC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred c----hH---HHcCCC-----CceEEEEECCcEEEEEEeHHHHHHHHHHChHHH
Confidence 9 56 777666 899999999999999999999999 88999873
No 11
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.62 E-value=3.2e-15 Score=142.73 Aligned_cols=144 Identities=8% Similarity=0.080 Sum_probs=119.4
Q ss_pred HHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecC
Q 042686 428 GRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDV 502 (596)
Q Consensus 428 ~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~ 502 (596)
+..++++++.|.+++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+ ......++|++||
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~g- 83 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLS- 83 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEC-
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEe-
Confidence 3567888999999999999999999999999999999999999999999999999997642 2345569999999
Q ss_pred CchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 042686 503 RRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRANDKNAKPRS 581 (596)
Q Consensus 503 ~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~~~~~~~~~~ 581 (596)
| +. ++..+. +++++++|+++|+++.+++++|.. ..++|++........+...+...+|...+...+|+.
T Consensus 84 --e-~~--~~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 153 (194)
T 3dn7_A 84 --D-YM--AFQKQQ-----PADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLRSKFQHMYSKEE 153 (194)
T ss_dssp --C-HH--HHHHTC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred --e-hH--HHhcCC-----CCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 4 42 455555 889999999999999999999999 999999987777777777777777777776666654
Q ss_pred c
Q 042686 582 C 582 (596)
Q Consensus 582 ~ 582 (596)
-
T Consensus 154 R 154 (194)
T 3dn7_A 154 Q 154 (194)
T ss_dssp -
T ss_pred H
Confidence 3
No 12
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.61 E-value=1.3e-14 Score=138.42 Aligned_cols=135 Identities=12% Similarity=0.135 Sum_probs=114.7
Q ss_pred cHHHHHHhcCHHH----HHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEE
Q 042686 407 RIDSFISDLSLDA----EKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKT 482 (596)
Q Consensus 407 ~e~~il~~Lp~~L----r~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v 482 (596)
.+.+..+.++|+| +.+.......+.++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|
T Consensus 12 ~~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v 91 (187)
T 3gyd_A 12 HENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEV 91 (187)
T ss_dssp CHHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred ccceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEE
Confidence 3455555555554 234445566789999999999999999999999999999999999999999999999999999
Q ss_pred EEeeec-----ceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchh
Q 042686 483 WAYSKK-----LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVS 553 (596)
Q Consensus 483 ~v~~~~-----~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~ 553 (596)
+++..+ ..+...++|++|| +. +++.+. +++++++|.++|+++.|++++|.. ..++|++.
T Consensus 92 ~v~~~~~~g~~~~~~~~~~G~~fG----e~---~~l~~~-----~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~ 156 (187)
T 3gyd_A 92 NVIKDIPNKGIQTIAKVGAGAIIG----EM---SMIDGM-----PRSASCVASLPTDFAVLSRDALYQLLANMPKLG 156 (187)
T ss_dssp EEEEEETTTEEEEEEEEETTCEES----HH---HHHHCC-----CCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHH
T ss_pred EEEEECCCCCeEEEEEccCCCeee----eH---HHhCCC-----CeeEEEEECCCeEEEEEcHHHHHHHHHHChHHH
Confidence 997753 3456679999999 57 666666 899999999999999999999999 99999883
No 13
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.60 E-value=5.7e-15 Score=132.71 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=102.3
Q ss_pred HHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhh
Q 042686 428 GRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKEL 507 (596)
Q Consensus 428 ~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel 507 (596)
..+.++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+ ....++|++|| +.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~~~G~~~G----~~ 82 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFG----EM 82 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--CEEECTTCEEC----HH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--cceECCCCEee----eh
Confidence 4568999999999999999999999999999999999999999999999999999887655 34679999999 56
Q ss_pred hhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH
Q 042686 508 IDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 508 ~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k 554 (596)
+++.+. +++.+++|.++|+++.|++++|.. +.++|++.+
T Consensus 83 ---~~~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 122 (138)
T 1vp6_A 83 ---ALISGE-----PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAE 122 (138)
T ss_dssp ---HHHHCC-----CCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred ---HhccCC-----CceeEEEECCCEEEEEECHHHHHHHHHHCHHHHH
Confidence 677666 888999999999999999999999 889998754
No 14
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.59 E-value=6.9e-15 Score=135.35 Aligned_cols=115 Identities=22% Similarity=0.187 Sum_probs=104.6
Q ss_pred HHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCch
Q 042686 426 HMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRK 505 (596)
Q Consensus 426 ~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~e 505 (596)
....+.|+++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..++.+...++|++||
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fG---- 109 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFG---- 109 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTEEEEEECTTCEEC----
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCEEEEEecCCCEee----
Confidence 3456789999999999999999999999999999999999999999999999999999998777778889999999
Q ss_pred hhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 506 ELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 506 el~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
+. +++.+. ++.++++|.++|+++.|++++|.. +.+++.+
T Consensus 110 e~---~~~~~~-----~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~ 149 (154)
T 3pna_A 110 EL---ALIYGT-----PRAATVKAKTNVKLWGIDRDSYRRILMGSTLR 149 (154)
T ss_dssp CH---HHHHCC-----CCSSEEEESSCEEEEEEEHHHHHHHTHHHHHH
T ss_pred eh---HhhcCC-----CcceEEEECcceEEEEEeHHHHHHHHHhChHH
Confidence 56 777666 889999999999999999999999 7777654
No 15
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.58 E-value=9e-15 Score=135.50 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec----ceeeecCCC
Q 042686 422 EVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK----LSITIQRHQ 497 (596)
Q Consensus 422 ~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~----~~~~~~~~G 497 (596)
+.......+.|+++|+|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++... ..+...++|
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G 109 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCC
Confidence 3444556789999999999999999999999999999999999999999999999999999997632 345567999
Q ss_pred CeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 498 DHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 498 ~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
++|| |. +++.+. +++++++|.++|+++.|++++|.. +.++|.+
T Consensus 110 ~~fG----e~---~~~~~~-----~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~ 153 (161)
T 3idb_B 110 GSFG----EL---ALMYNT-----PRAATITATSPGALWGLDRVTFRRIIVKNNAK 153 (161)
T ss_dssp CEEC----GG---GGTCCC-----CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHT
T ss_pred CEec----hH---HHHcCC-----CcccEEEECCCeEEEEEeHHHHHHHHHHCHHH
Confidence 9999 57 777776 899999999999999999999999 8888866
No 16
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.58 E-value=1.1e-14 Score=133.15 Aligned_cols=114 Identities=13% Similarity=0.200 Sum_probs=101.2
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCC
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVR 503 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~ 503 (596)
.+.++++++|++++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++..+ ..+...++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G-- 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA-- 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEES--
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeec--
Confidence 467999999999999999999999999999999999999999999999999999997532 2456679999999
Q ss_pred chhhhhHhhccccccCCCC-cccEEEEeceEEEEEechHhHhh-hhcCcchhH
Q 042686 504 RKELIDWAKNENSYQQLPI-SDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 504 ~eel~~~al~~~~~~~~~~-~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k 554 (596)
+. +++.+. + +.++++|.++|+++.|++++|.. +.++|++..
T Consensus 89 --~~---~~~~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 131 (154)
T 2z69_A 89 --EA---MMFMDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLAL 131 (154)
T ss_dssp --GG---GGGSSC-----SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHH
T ss_pred --cH---hhccCC-----CCCceEEEEccceEEEEECHHHHHHHHHHChHHHH
Confidence 56 666655 6 89999999999999999999999 889998743
No 17
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.58 E-value=8.4e-15 Score=141.95 Aligned_cols=111 Identities=14% Similarity=0.203 Sum_probs=97.9
Q ss_pred hhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchh
Q 042686 432 LRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKE 506 (596)
Q Consensus 432 L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~ee 506 (596)
|+++|+|++++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ ..+...++|++|| +
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G----~ 76 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFG----E 76 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEEC----H
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEe----e
Confidence 578999999999999999999999999999999999999999999999999998642 2456679999999 5
Q ss_pred hhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH
Q 042686 507 LIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 507 l~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k 554 (596)
. +++.+. +++++++|.++|+++.+++++|.. ..++|++.+
T Consensus 77 ~---~~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 117 (216)
T 4ev0_A 77 M---SLLDEG-----ERSASAVAVEDTELLALFREDYLALIRRLPLVAH 117 (216)
T ss_dssp H---HHHHCC-----BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred h---hhcCCC-----CcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHH
Confidence 6 677666 889999999999999999999999 889998844
No 18
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.57 E-value=1.6e-14 Score=142.24 Aligned_cols=142 Identities=9% Similarity=0.016 Sum_probs=115.8
Q ss_pred HHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCee
Q 042686 426 HMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHC 500 (596)
Q Consensus 426 ~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~F 500 (596)
....+.|+++|+|++++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ ..+...++|++|
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 86 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF 86 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence 345678999999999999999999999999999999999999999999999999999998742 245667999999
Q ss_pred cCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhhccccCCC
Q 042686 501 DVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRANDKNAKP 579 (596)
Q Consensus 501 G~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~~~~~~~~ 579 (596)
| +. +++.+. +++++++|.++|+++.+++++|.. +.++|++.......+....+...++.......++
T Consensus 87 G----~~---~~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 154 (237)
T 3fx3_A 87 G----EA---VALRNT-----PYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQTG 154 (237)
T ss_dssp C----HH---HHHHTC-----CCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_pred c----hH---HHhcCC-----CCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 9 56 666666 899999999999999999999999 9999998554333333334555555555444443
No 19
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.56 E-value=5.2e-15 Score=151.29 Aligned_cols=131 Identities=15% Similarity=0.219 Sum_probs=119.0
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecc
Q 042686 410 SFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKL 489 (596)
Q Consensus 410 ~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~ 489 (596)
.-..++|+..|.+...+...+.++++++|++++++.+..++..++.+.|++|++|+++||.++.+|||++|.|++..++.
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~ 98 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGV 98 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETTE
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECCE
Confidence 33446999999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred eeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 490 SITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 490 ~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
.+....+|++|| |+ +++.+. ++++|++|.++|+++.|++++|.. ..++|..
T Consensus 99 ~~~~~~~G~~fG----e~---~ll~~~-----~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~ 150 (299)
T 3shr_A 99 KLCTMGPGKVFG----EL---AILYNC-----TRTATVKTLVNVKLWAIDRQCFQTIMMRTGLI 150 (299)
T ss_dssp EEEEECTTCEES----CS---GGGTTT-----BCCSEEEESSCEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCeee----Hh---HHhcCC-----CCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHH
Confidence 778889999999 57 888777 999999999999999999999999 7777654
No 20
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.56 E-value=1.1e-14 Score=142.52 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=111.3
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCC
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVR 503 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~ 503 (596)
.+.++++|+|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ ..+...++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G-- 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFG-- 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES--
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEe--
Confidence 457899999999999999999999999999999999999999999999999999997642 2355679999999
Q ss_pred chhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhhccc
Q 042686 504 RKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRANDK 575 (596)
Q Consensus 504 ~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~~~~ 575 (596)
+. +++.+. +++++++|.++|+++.|++++|.. +.++|++............+...++.....
T Consensus 83 --~~---~~~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~ 145 (227)
T 3d0s_A 83 --EL---SIFDPG-----PRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLI 145 (227)
T ss_dssp --CH---HHHSCS-----CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --eH---HHcCCC-----CceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56 666666 899999999999999999999999 899999855444444444444444443333
No 21
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.55 E-value=3.8e-14 Score=139.60 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=114.8
Q ss_pred HHHhhcchhhccccHHHHHHHHhc--ceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeec
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGC--LKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCD 501 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~--l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG 501 (596)
.+.++++|+|++++++.++.++.. ++.+.|++|++|+++||.++.+|+|.+|.|+++..+ ..+...++|++||
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG 96 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE 96 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeee
Confidence 467899999999999999999998 999999999999999999999999999999997632 2445669999999
Q ss_pred CCchhhhhHhhccccccCCCC-cccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhhccccCCC
Q 042686 502 VRRKELIDWAKNENSYQQLPI-SDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRANDKNAKP 579 (596)
Q Consensus 502 ~~~eel~~~al~~~~~~~~~~-~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~~~~~~~~ 579 (596)
+. +++.+. + ++++++|+++|+++.|++++|.. +.++|++............+...++.......++
T Consensus 97 ----~~---~~~~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~ 164 (232)
T 1zyb_A 97 ----PQ---SLFGMN-----TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDL 164 (232)
T ss_dssp ----GG---GGSSSC-----CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSH
T ss_pred ----eh---HHhCCC-----CCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 56 666555 5 89999999999999999999999 9999998665555555555556665555544444
No 22
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.55 E-value=3.1e-14 Score=138.31 Aligned_cols=136 Identities=11% Similarity=0.012 Sum_probs=110.4
Q ss_pred HHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCe--ecC
Q 042686 430 KLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDH--CDV 502 (596)
Q Consensus 430 ~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~--FG~ 502 (596)
++++++|+|++++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+ ..+...++|++ ||
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g- 81 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLS- 81 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGG-
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehh-
Confidence 57899999999999999999999999999999999999999999999999999998642 23456699999 78
Q ss_pred CchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhhccccC
Q 042686 503 RRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRANDKNA 577 (596)
Q Consensus 503 ~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~~~~~~ 577 (596)
+. +++.+. +++++++|.++|+++.+++++|.. +.++|++............+...++.......
T Consensus 82 ---~~---~~~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~ 146 (220)
T 3dv8_A 82 ---AS---CIMRSI-----QFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWK 146 (220)
T ss_dssp ---GG---GGCTTC-----CCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---HH---HHhCCC-----CCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56 677666 899999999999999999999999 99999986544444444444444444443333
No 23
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=134.15 Aligned_cols=122 Identities=9% Similarity=0.051 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeC-CCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCC
Q 042686 418 DAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFS-ERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRH 496 (596)
Q Consensus 418 ~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~-~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~ 496 (596)
..|.+.......+.|+++++|++++++.+..++..++.+.|+ +|++|+++|+.++.+|||.+|.|+++..+......++
T Consensus 4 ~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~l~~ 83 (134)
T 2d93_A 4 GSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENLFM 83 (134)
T ss_dssp SCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEEECT
T ss_pred hhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEEecC
Confidence 333333334456678999999999999999999999999999 9999999999999999999999999875433366799
Q ss_pred CCeecCCchhhhhHhhccccccCCCCcccEE-EEeceEEEEEechHhHhh-hhcCcc
Q 042686 497 QDHCDVRRKELIDWAKNENSYQQLPISDRTV-RALTDVEAFTLKADDVKC-ALLFRP 551 (596)
Q Consensus 497 G~~FG~~~eel~~~al~~~~~~~~~~~~~tv-~A~t~~~l~~L~~~df~~-~~~f~~ 551 (596)
|++|| +. +++.+. ++.+++ +|.++|+++.|++++|.. +.+.+.
T Consensus 84 G~~fG----~~---~~~~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 84 GNSFG----IT---PTLDKQ-----YMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp TCEES----CC---SSSCCE-----ECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred CCccC----hh---HhcCCC-----cceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 99999 56 777666 788888 999999999999999999 776654
No 24
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.52 E-value=5.8e-14 Score=137.84 Aligned_cols=128 Identities=9% Similarity=0.097 Sum_probs=105.8
Q ss_pred hcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeee----c-ceeeecCCCCeecCCchhh
Q 042686 433 RKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSK----K-LSITIQRHQDHCDVRRKEL 507 (596)
Q Consensus 433 ~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~----~-~~~~~~~~G~~FG~~~eel 507 (596)
.++|+|++++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++.. + ..+...++|++|| +.
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G----~~ 88 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFG----MR 88 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEES----HH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEee----ee
Confidence 4689999999999999999999999999999999999999999999999999753 2 3456679999999 56
Q ss_pred hhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhh
Q 042686 508 IDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRA 572 (596)
Q Consensus 508 ~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~ 572 (596)
+++.+. +++++++|.++|+++.|++++|.. +.++|++............+...++..
T Consensus 89 ---~~~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~ 146 (232)
T 2gau_A 89 ---PYFAEE-----TCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTV 146 (232)
T ss_dssp ---HHHHTS-----CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhCCC-----CcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666 889999999999999999999999 899999855444444444444444433
No 25
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.51 E-value=9.5e-14 Score=137.00 Aligned_cols=113 Identities=22% Similarity=0.158 Sum_probs=104.7
Q ss_pred HHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhh
Q 042686 428 GRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKEL 507 (596)
Q Consensus 428 ~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel 507 (596)
..+.|+++|+|++++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.++++..++.+...++|++|| |+
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~~fG----e~ 80 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFG----EL 80 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTSCCEEECTTCEEC----HH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCEEEEecCCCCeee----hh
Confidence 35789999999999999999999999999999999999999999999999999999988777778889999999 57
Q ss_pred hhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 508 IDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 508 ~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
+++.+. +++++++|.++|+++.|++++|.. ..+.|..
T Consensus 81 ---~l~~~~-----~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~ 118 (246)
T 3of1_A 81 ---ALMYNS-----PRAATVVATSDCLLWALDRLTFRKILLGSSFK 118 (246)
T ss_dssp ---HHHHTC-----CCSSEEEESSCEEEEEEEHHHHHHTTTTTTSH
T ss_pred ---HHhcCC-----CCCcEEEECCCeEEEEEEhHHHHHHHHHhHHH
Confidence 787777 999999999999999999999999 8888754
No 26
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.51 E-value=1.8e-13 Score=139.74 Aligned_cols=129 Identities=18% Similarity=0.135 Sum_probs=111.8
Q ss_pred HHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec------ceeeecCCCCe
Q 042686 426 HMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK------LSITIQRHQDH 499 (596)
Q Consensus 426 ~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~------~~~~~~~~G~~ 499 (596)
......++++|+|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++... ..+..+++|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 446778999999999999999999999999999999999999999999999999999997653 24567799999
Q ss_pred ecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch-hHHHHHHHHHHHHH
Q 042686 500 CDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV-SKEAAALIQLVWRF 566 (596)
Q Consensus 500 FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~-~k~~~~~~q~~~~~ 566 (596)
|| |. +++.+. +++++|+|.++|+++.|++++|.. +.++|++ .++.+.+.++.-..
T Consensus 233 fG----e~---~ll~~~-----~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~ 289 (299)
T 3shr_A 233 FG----EK---ALQGED-----VRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYE 289 (299)
T ss_dssp EC----GG---GGSSSE-----ECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred eC----hH---HHhCCC-----CcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcc
Confidence 99 57 777776 899999999999999999999999 9999998 44555555554443
No 27
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.51 E-value=8.6e-14 Score=136.49 Aligned_cols=114 Identities=16% Similarity=0.101 Sum_probs=102.5
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCC
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVR 503 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~ 503 (596)
.+.|+++|+|++++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ ..+...++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G-- 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVG-- 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEES--
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEe--
Confidence 467899999999999999999999999999999999999999999999999999997643 2346679999999
Q ss_pred chhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH
Q 042686 504 RKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 504 ~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k 554 (596)
+. +++.+. +++++++|.++|+++.+++++|.. +.++|.+..
T Consensus 83 --~~---~~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 124 (231)
T 3e97_A 83 --ET---AVLAHQ-----ERSASVRALTPVRTLMLHREHFELILRRHPRVLW 124 (231)
T ss_dssp --TT---TTTCCC-----CCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHH
T ss_pred --eH---HHhCCC-----CceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence 56 677666 899999999999999999999999 889998843
No 28
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.51 E-value=3.3e-14 Score=131.49 Aligned_cols=62 Identities=10% Similarity=0.138 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042686 288 KKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKIN 366 (596)
Q Consensus 288 ~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~ 366 (596)
..|..|+||++.|+ |||||||++|.|..+++++++.+++|..++|+.+|.+++.+.+...++
T Consensus 83 ~s~~~a~y~s~vTl-----------------tTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 83 ISYPDALWWSVETA-----------------TTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp TSHHHHHHHHHHHH-----------------TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred Ccccceeheeeeee-----------------ecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999 999999999999999999999999999999999999999887665533
No 29
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.51 E-value=2.7e-14 Score=139.49 Aligned_cols=113 Identities=13% Similarity=0.208 Sum_probs=101.1
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCC
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVR 503 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~ 503 (596)
.+.++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ ..+...++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G-- 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA-- 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEES--
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEee--
Confidence 467899999999999999999999999999999999999999999999999999987632 2445669999999
Q ss_pred chhhhhHhhccccccCCCC-cccEEEEeceEEEEEechHhHhh-hhcCcchh
Q 042686 504 RKELIDWAKNENSYQQLPI-SDRTVRALTDVEAFTLKADDVKC-ALLFRPVS 553 (596)
Q Consensus 504 ~eel~~~al~~~~~~~~~~-~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~ 553 (596)
+. +++.+. + ++++++|.++|+++.+++++|.. +.++|.+.
T Consensus 86 --~~---~~~~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~ 127 (227)
T 3dkw_A 86 --EA---MMFMDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLA 127 (227)
T ss_dssp --CT---TTTTTC-----SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHH
T ss_pred --eH---HhcCCC-----CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHH
Confidence 46 666665 6 89999999999999999999999 88999884
No 30
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.50 E-value=1.7e-13 Score=142.27 Aligned_cols=121 Identities=16% Similarity=0.115 Sum_probs=106.5
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec----ceeeecCCCCeecCCc
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK----LSITIQRHQDHCDVRR 504 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~----~~~~~~~~G~~FG~~~ 504 (596)
.+.|+++|+|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +.+...++|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fG--- 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVG--- 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEES---
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEee---
Confidence 478999999999999999999999999999999999999999999999999999998753 3566779999999
Q ss_pred hhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH-HHHHHHHH
Q 042686 505 KELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK-EAAALIQL 562 (596)
Q Consensus 505 eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k-~~~~~~q~ 562 (596)
|. +++.+. +++++++|+++|+++.|++++|.. + ++|.+.. +.+.+.+.
T Consensus 89 -e~---~l~~~~-----~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~ 138 (333)
T 4ava_A 89 -EI---ALLRDS-----PRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR 138 (333)
T ss_dssp -HH---HHHHTC-----BCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred -HH---HhcCCC-----CceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 57 777776 899999999999999999999999 8 9998844 44444433
No 31
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.49 E-value=1.4e-13 Score=134.60 Aligned_cols=115 Identities=13% Similarity=0.168 Sum_probs=89.7
Q ss_pred HHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCC
Q 042686 429 RKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVR 503 (596)
Q Consensus 429 ~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~ 503 (596)
...+++.++|++++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ ..+...++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G-- 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVG-- 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES--
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEE--
Confidence 457889999999999999999999999999999999999999999999999999998632 2455679999999
Q ss_pred chhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcC-----cchhH
Q 042686 504 RKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLF-----RPVSK 554 (596)
Q Consensus 504 ~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f-----~~~~k 554 (596)
+. +++.+. ++++++++|.++|+++.+++++|.. +.++ |++.+
T Consensus 88 --~~---~~~~~~----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~ 135 (230)
T 3iwz_A 88 --EM---GLFIES----DTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILY 135 (230)
T ss_dssp --CG---GGTSCC----SBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHH
T ss_pred --eh---hhhcCC----CCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHH
Confidence 46 555432 1688999999999999999999999 8888 88743
No 32
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.49 E-value=4.7e-14 Score=126.65 Aligned_cols=116 Identities=37% Similarity=0.575 Sum_probs=96.7
Q ss_pred HHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec--c--eee--ecCCCCeecCC
Q 042686 430 KLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK--L--SIT--IQRHQDHCDVR 503 (596)
Q Consensus 430 ~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~--~--~~~--~~~~G~~FG~~ 503 (596)
+.++++|+|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|++.... + .+. ..++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fG-- 83 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCG-- 83 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSS--
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEec--
Confidence 35789999999999999999999999999999999999999999999999999976322 2 233 789999999
Q ss_pred chhhhhHhh---cccc-ccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 504 RKELIDWAK---NENS-YQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 504 ~eel~~~al---~~~~-~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
|. ++ +.+. ....++++++++|.++|+++.|++++|.+ +.++|++
T Consensus 84 --e~---~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l 132 (137)
T 1wgp_A 84 --DE---LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRS 132 (137)
T ss_dssp --TH---HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCC
T ss_pred --HH---HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhh
Confidence 46 53 4433 01111357899999999999999999999 9899987
No 33
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.2e-13 Score=134.32 Aligned_cols=115 Identities=19% Similarity=0.152 Sum_probs=104.0
Q ss_pred HHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecc-eeeecCCCCeecCCc
Q 042686 426 HMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKL-SITIQRHQDHCDVRR 504 (596)
Q Consensus 426 ~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~-~~~~~~~G~~FG~~~ 504 (596)
.+....++++++|+++++..+..++..++.+.|++|++|+++||.++.+|+|.+|.++++..+. .+..+++|++||
T Consensus 121 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fG--- 197 (246)
T 3of1_A 121 LMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFG--- 197 (246)
T ss_dssp HHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEEC---
T ss_pred HHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCccc---
Confidence 3445678899999999999999999999999999999999999999999999999999988764 667789999999
Q ss_pred hhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 505 KELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 505 eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
|. +++.+. +|+++++|.++|+++.|++++|.. +..+|++
T Consensus 198 -e~---~~~~~~-----~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~ 237 (246)
T 3of1_A 198 -EV---ALLNDL-----PRQATVTATKRTKVATLGKSGFQRLLGPAVDV 237 (246)
T ss_dssp -HH---HHHHTC-----BCSSEEEESSCEEEEEEEHHHHHHHCTTHHHH
T ss_pred -HH---HHhCCC-----CcccEEEECCCEEEEEEeHHHHHHHhccHHHH
Confidence 57 777666 899999999999999999999999 8888765
No 34
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.45 E-value=4.2e-13 Score=136.26 Aligned_cols=116 Identities=22% Similarity=0.180 Sum_probs=106.2
Q ss_pred HHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCc
Q 042686 425 RHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRR 504 (596)
Q Consensus 425 ~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~ 504 (596)
.....+.|+++|+|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++..++.+...++|++||
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g~~~~~l~~G~~fG--- 110 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFG--- 110 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEETTEEEEEECTTCEEC---
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEECCeEEEEcCCCCccc---
Confidence 44567889999999999999999999999999999999999999999999999999999988667778889999999
Q ss_pred hhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 505 KELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 505 eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
|. +++.+. +++++++|.++|+++.|++++|.. +.++|.+
T Consensus 111 -e~---~l~~~~-----~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~ 150 (291)
T 2qcs_B 111 -EL---ALIYGT-----PRAATVKAKTNVKLWGIDRDSYRRILMGSTLR 150 (291)
T ss_dssp -GG---GGTCCC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHHHHH
T ss_pred -hH---HHhcCC-----CCceEEEECCCEEEEEEEhHHHHHHHhhhHHH
Confidence 57 888777 899999999999999999999999 7777765
No 35
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.44 E-value=4.2e-13 Score=119.25 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQK 364 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~ 364 (596)
.|..|+||++.|+ ||+||||++|.|..+++++++.++.|..++|+.+|.+++.+.+..+
T Consensus 61 ~~~~a~y~~~~T~-----------------tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 61 TYPRALWWACETA-----------------TTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp SHHHHHHHHHHHH-----------------TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeee-----------------eeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999 9999999999999999999999999999999999999998876554
No 36
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.42 E-value=3.4e-13 Score=143.30 Aligned_cols=116 Identities=21% Similarity=0.164 Sum_probs=106.8
Q ss_pred HHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCc
Q 042686 425 RHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRR 504 (596)
Q Consensus 425 ~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~ 504 (596)
.....+.|+++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++..++.+...++|++||
T Consensus 125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~~v~~l~~G~~fG--- 201 (381)
T 4din_B 125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFG--- 201 (381)
T ss_dssp HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTEEEEEEESSCCBC---
T ss_pred HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCeEeeeCCCCCEEE---
Confidence 34456889999999999999999999999999999999999999999999999999999998777788889999999
Q ss_pred hhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 505 KELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 505 eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
|+ +++.+. ++++|++|.++|+++.|++++|.. +.+.|..
T Consensus 202 -e~---all~~~-----~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~ 241 (381)
T 4din_B 202 -EL---ALIYGT-----PRAATVKAKTDLKLWGIDRDSYRRILMGSTLR 241 (381)
T ss_dssp -GG---GGTSCC-----BCSSEEEESSSCEEEEEEHHHHHHHHHHHHHH
T ss_pred -ch---HHhcCC-----CcceEEEECCCEEEEEEchHHHHHhhhhhhHH
Confidence 68 888877 999999999999999999999999 7777755
No 37
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.40 E-value=2.5e-12 Score=130.52 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=103.0
Q ss_pred HHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec------ceeeecCCCCe
Q 042686 426 HMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK------LSITIQRHQDH 499 (596)
Q Consensus 426 ~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~------~~~~~~~~G~~ 499 (596)
.+....++++++|+++++..+..++..++.+.|++|++|+++||.++.+|+|.+|.|++.... ..+..+++|++
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~ 232 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDY 232 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCE
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCE
Confidence 345677889999999999999999999999999999999999999999999999999997532 24567799999
Q ss_pred ecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 500 CDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 500 FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
|| |. +++.+. +++++++|.++|+++.|++++|.. +.++|++
T Consensus 233 fG----e~---~ll~~~-----~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~ 274 (291)
T 2qcs_B 233 FG----EI---ALLMNR-----PKAATVVARGPLKCVKLDRPRFERVLGPCSDI 274 (291)
T ss_dssp EC----SG---GGTCCC-----CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHH
T ss_pred ec----HH---HHcCCC-----CcceEEEECCcEEEEEEcHHHHHHHhccHHHH
Confidence 99 57 777776 899999999999999999999999 8888875
No 38
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.39 E-value=1.7e-12 Score=125.06 Aligned_cols=108 Identities=13% Similarity=0.179 Sum_probs=89.9
Q ss_pred hhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhH
Q 042686 436 EEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDW 510 (596)
Q Consensus 436 ~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~ 510 (596)
++++.++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.++++..+ ..+...++|++|| +.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G----~~--- 74 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIG----EL--- 74 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEES----CT---
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEee----eH---
Confidence 46778999999999999999999999999999999999999999999998642 2445669999999 46
Q ss_pred hhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH
Q 042686 511 AKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 511 al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k 554 (596)
+++.+. ++++++++|.++|+++.+++++|.. +.++|++.+
T Consensus 75 ~~~~~~----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 115 (210)
T 3ryp_A 75 GLFEEG----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 115 (210)
T ss_dssp TTTSTT----CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred HHhcCC----CCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHH
Confidence 555432 1688999999999999999999999 989998854
No 39
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.39 E-value=4.3e-13 Score=130.56 Aligned_cols=121 Identities=10% Similarity=0.136 Sum_probs=100.0
Q ss_pred HHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec----ceeeecCCCCeecCCch
Q 042686 430 KLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK----LSITIQRHQDHCDVRRK 505 (596)
Q Consensus 430 ~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~----~~~~~~~~G~~FG~~~e 505 (596)
..|+++|+|++++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.++++... ..+...++|++|| +
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G---~ 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFC---T 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEE---S
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeC---C
Confidence 45789999999999999999999999999999999999999999999999999985321 2345669999999 3
Q ss_pred hhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHh
Q 042686 506 ELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKH 569 (596)
Q Consensus 506 el~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~ 569 (596)
+++++++|.++|+++.+++++|.. +.++|++............+...+
T Consensus 81 ----------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 129 (220)
T 2fmy_A 81 ----------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLT 129 (220)
T ss_dssp ----------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999 889998855333333333333333
No 40
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.39 E-value=1.3e-12 Score=140.39 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=103.3
Q ss_pred HHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec----ceeeecCCCCe
Q 042686 424 KRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK----LSITIQRHQDH 499 (596)
Q Consensus 424 ~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~----~~~~~~~~G~~ 499 (596)
......+.|+++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++... ..+....+|++
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~ 218 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGS 218 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCE
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCE
Confidence 34455788999999999999999999999999999999999999999999999999999998642 34567799999
Q ss_pred ecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcc
Q 042686 500 CDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRP 551 (596)
Q Consensus 500 FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~ 551 (596)
|| |+ +++.+. ++.+|++|.++|+++.|++++|.. +.++|.
T Consensus 219 fG----e~---all~~~-----pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~ 259 (416)
T 3tnp_B 219 FG----EL---ALMYNT-----PKAATITATSPGALWGLDRVTFRRIIVKNNA 259 (416)
T ss_dssp EC----GG---GGTSCC-----CCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred Ee----eH---HHhcCC-----CcccEEEEccCeEEEEEeehhhhhhhhcchh
Confidence 99 68 888877 999999999999999999999998 665553
No 41
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.37 E-value=3.8e-12 Score=117.02 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHh-
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQT------EIARS- 362 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~------~i~~~- 362 (596)
|..|+||++.|+ |||||||++|.|..+++++++.+++|..++++.+|.+++ +....
T Consensus 53 ~~~a~y~~~~t~-----------------tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (148)
T 3vou_A 53 PLDALYFSVVTL-----------------TTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRK 115 (148)
T ss_dssp HHHHHHHHHHHH-----------------TTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------------HccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999 999999999999999999999999999999999999886 33222
Q ss_pred ---HHHHHHHHHHHhhc-cc-cccCCCHhHHHH
Q 042686 363 ---QKINQKWQVIRQSK-HY-ADISRDQNVRGQ 390 (596)
Q Consensus 363 ---~~~~~~~~~~~~~~-~~-~~~~lp~~L~~r 390 (596)
+....+.+.+++++ ++ ++++.|++|+.|
T Consensus 116 ~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 116 KETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 33333445566666 67 888888888865
No 42
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.37 E-value=5.9e-13 Score=129.89 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=93.4
Q ss_pred HhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeee-c---ceeeecCCCCeecCCchh
Q 042686 431 LLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSK-K---LSITIQRHQDHCDVRRKE 506 (596)
Q Consensus 431 ~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~-~---~~~~~~~~G~~FG~~~ee 506 (596)
+|+++|+|++++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++.. + ..+...++|++|| .
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG---~- 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC---M- 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE---S-
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec---C-
Confidence 468899999999999999999999999999999999999999999999999998632 1 2345669999999 3
Q ss_pred hhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH
Q 042686 507 LIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 507 l~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k 554 (596)
+++++++|+++|+++.+++++|.. +.++|++..
T Consensus 77 ---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 110 (222)
T 1ft9_A 77 ---------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAW 110 (222)
T ss_dssp ---------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHH
T ss_pred ---------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHH
Confidence 778999999999999999999999 889998844
No 43
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.36 E-value=2e-12 Score=140.67 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=112.0
Q ss_pred cCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec------
Q 042686 415 LSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK------ 488 (596)
Q Consensus 415 Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~------ 488 (596)
.|+..|.+.......+.++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++...
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 46777877778888899999999999999999999999999999999999999999999999999999997642
Q ss_pred -ceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 489 -LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 489 -~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
..+...++|++|| |+ + +.+. +++++++|.++|+++.|++++|.. +.++|.+
T Consensus 107 ~~~~~~~~~G~~fG----e~---~-l~~~-----~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~ 159 (469)
T 1o7f_A 107 AVTICTLGIGTAFG----ES---I-LDNT-----PRHATIVTRESSELLRIEQEDFKALWEKYRQY 159 (469)
T ss_dssp CEEEEEECTTCEEC----GG---G-GGTC-----BCSSEEEESSSEEEEEEEHHHHHHHHHHHGGG
T ss_pred ceEEEEccCCCCcc----hh---h-hCCC-----CccceEEEccceeEEEEcHHHHHHHHHhCHHH
Confidence 2456679999999 57 7 6666 899999999999999999999999 8888764
No 44
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.35 E-value=5.2e-12 Score=121.31 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=87.8
Q ss_pred ccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhHhhccc
Q 042686 441 WDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDWAKNEN 515 (596)
Q Consensus 441 l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~al~~~ 515 (596)
++++.++.++..++.+.|++|++|+++||+++.+|||.+|.++++..+ ..+...++|++|| +. +++.+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G----~~---~~~~~ 73 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFG----EL---GLFEK 73 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEES----CT---TTCC-
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcc----cH---HHhcC
Confidence 578999999999999999999999999999999999999999997642 2455679999999 46 55543
Q ss_pred cccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH
Q 042686 516 SYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 516 ~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k 554 (596)
... ..+++++++|.++|+++.+++++|.. +.++|.+..
T Consensus 74 ~~~-~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 112 (207)
T 2oz6_A 74 EGS-EQERSAWVRAKVECEVAEISYAKFRELSQQDSEILY 112 (207)
T ss_dssp -----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CCC-CCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHH
Confidence 200 00478999999999999999999999 889998844
No 45
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.35 E-value=2.5e-12 Score=138.25 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=101.4
Q ss_pred HHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----------ceeeecCC
Q 042686 428 GRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----------LSITIQRH 496 (596)
Q Consensus 428 ~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----------~~~~~~~~ 496 (596)
+..+++++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++... ..+..+++
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~ 344 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFR 344 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECT
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCC
Confidence 3456788899999999999999999999999999999999999999999999999997542 24567799
Q ss_pred CCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 497 QDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 497 G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
|++|| |+ +++.+. +++++|+|.++|+++.|++++|.. +.++|++
T Consensus 345 G~~fG----E~---all~~~-----~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i 389 (416)
T 3tnp_B 345 GQYFG----EL---ALVTNK-----PRAASAHAIGTVKCLAMDVQAFERLLGPCMEI 389 (416)
T ss_dssp TCEES----GG---GGTCCS-----CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHH
T ss_pred CCEec----HH---HHhCCC-----CceeEEEEcCCeEEEEEEHHHHHHHhcchHHH
Confidence 99999 57 888776 899999999999999999999999 8888876
No 46
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.34 E-value=4.4e-13 Score=121.53 Aligned_cols=89 Identities=9% Similarity=0.066 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQKW 369 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~~~ 369 (596)
|..|+||++.|| |||||||++|.|..+++++++.|++|++++|+++|.+++.+.+....+.+.
T Consensus 44 ~~~a~y~~~~T~-----------------tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~ 106 (137)
T 4h33_A 44 YPDALWWAIVTA-----------------TTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSST 106 (137)
T ss_dssp HHHHHHHHHHHH-----------------TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC----
T ss_pred HHHHHHHHHHHH-----------------HcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999 999999999999999999999999999999999999999886655433322
Q ss_pred HHHHhhc-cc--cccCCCHhHHHHHHHHHH
Q 042686 370 QVIRQSK-HY--ADISRDQNVRGQFKKAKR 396 (596)
Q Consensus 370 ~~~~~~~-~~--~~~~lp~~L~~rv~~y~~ 396 (596)
++.++. +. +..+++++.+..++++.+
T Consensus 107 -~~~~~~~~~~~~~~~l~~~~i~~l~~~l~ 135 (137)
T 4h33_A 107 -QRANKITQLISETPDLTKEEIAVVEQFLT 135 (137)
T ss_dssp ------------------------------
T ss_pred -HHHHHHHHHHHhhhhccHHHHHHHHHHHh
Confidence 222333 33 555666777777777665
No 47
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.33 E-value=4.1e-12 Score=138.10 Aligned_cols=115 Identities=11% Similarity=0.056 Sum_probs=103.7
Q ss_pred HHHHHHhhcchhhccccHHHHHHHHhccee-EEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-ceeeecCCCCeecCC
Q 042686 426 HMGRKLLRKVEEFQNWDEFSLDYLFGCLKP-VVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-LSITIQRHQDHCDVR 503 (596)
Q Consensus 426 ~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~-~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-~~~~~~~~G~~FG~~ 503 (596)
....+.++++++|++++++.+..++..++. +.|++|++|+++||.++.+|||.+|.|+++..+ ..+..+++|++||
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~fG-- 410 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFG-- 410 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEEC--
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCEEE--
Confidence 344678999999999999999999999985 489999999999999999999999999998765 3667789999999
Q ss_pred chhhhhHhhccccccCCCCcccEEEEec-eEEEEEechHhHhh-hhcCcch
Q 042686 504 RKELIDWAKNENSYQQLPISDRTVRALT-DVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 504 ~eel~~~al~~~~~~~~~~~~~tv~A~t-~~~l~~L~~~df~~-~~~f~~~ 552 (596)
|. +++.+. ++++|++|.+ +|+++.|++++|.. +.++|.+
T Consensus 411 --e~---~ll~~~-----~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~ 451 (469)
T 1o7f_A 411 --KL---ALVNDA-----PRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 451 (469)
T ss_dssp --GG---GGTCCS-----CCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC
T ss_pred --Ee---hhhcCC-----CceEEEEEecCCEEEEEEcHHHHHHHHHHChHH
Confidence 57 888777 8999999999 79999999999999 9899987
No 48
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.31 E-value=8.9e-12 Score=124.92 Aligned_cols=105 Identities=13% Similarity=0.216 Sum_probs=88.2
Q ss_pred ccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhHhhc
Q 042686 439 QNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDWAKN 513 (596)
Q Consensus 439 ~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~al~ 513 (596)
..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ ..+...++|++|| +. +++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~G----e~---~~~ 127 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIG----EL---GLF 127 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEES----CT---TTT
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEe----eh---HHh
Confidence 45899999999999999999999999999999999999999999998642 2456679999999 46 555
Q ss_pred cccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhH
Q 042686 514 ENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 514 ~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k 554 (596)
.+. ++++++++|+++|+++.|++++|.. +.++|++.+
T Consensus 128 ~~~----~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~ 165 (260)
T 3kcc_A 128 EEG----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 165 (260)
T ss_dssp STT----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred CCC----CCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHH
Confidence 432 1688999999999999999999999 999999844
No 49
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.30 E-value=4.4e-12 Score=134.68 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=103.9
Q ss_pred HHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec------ceeeecCCCCe
Q 042686 426 HMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK------LSITIQRHQDH 499 (596)
Q Consensus 426 ~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~------~~~~~~~~G~~ 499 (596)
.++..+++++++|+++++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ ..+..+++|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 455678899999999999999999999999999999999999999999999999999998742 23567899999
Q ss_pred ecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch
Q 042686 500 CDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 500 FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~ 552 (596)
|| |. +++.+. +|+++|+|.++|+++.|++++|.. +..+|++
T Consensus 324 fG----e~---all~~~-----~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i 365 (381)
T 4din_B 324 FG----EI---ALLLNR-----PRAATVVARGPLKCVKLDRPRFERVLGPCSEI 365 (381)
T ss_dssp EC----TT---GGGSCC-----BCSSEEEESSCBEEEEEEHHHHHHHHCCHHHH
T ss_pred ec----hH---HHhCCC-----CceeEEEEcCCEEEEEEeHHHHHHHHhhhHHH
Confidence 99 57 888777 999999999999999999999999 8888876
No 50
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.30 E-value=7.2e-12 Score=121.52 Aligned_cols=134 Identities=14% Similarity=0.076 Sum_probs=98.1
Q ss_pred chhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhh
Q 042686 435 VEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELID 509 (596)
Q Consensus 435 v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~ 509 (596)
-|.|...++.....+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+ ..+...++|++|| +.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G----~~-- 77 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIA----SG-- 77 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESS----GG--
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEee----eH--
Confidence 467888889999999999999999999999999999999999999999997642 2345679999999 46
Q ss_pred HhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcch-hHHHHHHHHHHHHHHHhhhhccccCCCC
Q 042686 510 WAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPV-SKEAAALIQLVWRFKKHKRANDKNAKPR 580 (596)
Q Consensus 510 ~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~-~k~~~~~~q~~~~~~~~r~~~~~~~~~~ 580 (596)
+++.+. .++.++++|+++|+++.+++++|.. +.++|++ .++.+.+.+... ...++...+...+++
T Consensus 78 -~~~~~~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~-~~~~~~~~l~~~~~~ 144 (213)
T 1o5l_A 78 -FIFSSE----PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFR-VVSEKLFFLTTKTLR 144 (213)
T ss_dssp -GTTSSS----CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH-HHHHHHHHHHCC---
T ss_pred -HHhcCC----CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCHH
Confidence 554331 1688999999999999999999999 9999998 456666665543 344555444444443
No 51
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.28 E-value=6.1e-12 Score=149.55 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=106.4
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-
Q 042686 410 SFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK- 488 (596)
Q Consensus 410 ~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~- 488 (596)
..|+.-| .-|.+--.+.-.+.|+++++|+++++..+.+|+..++.+.|++|++|+++||.++.+|+|++|+|+|+..+
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 4444443 33433333344577999999999999999999999999999999999999999999999999999997642
Q ss_pred ------ceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcc
Q 042686 489 ------LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRP 551 (596)
Q Consensus 489 ------~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~ 551 (596)
..+..+++|+.|| | +++.+. ||++|++|.++|++++|++++|.. ..++|+
T Consensus 102 ~~~~~~~~v~~l~~G~sFG---E-----all~n~-----pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e 158 (999)
T 4f7z_A 102 SSHQDAVTICTLGIGTAFG---E-----SILDNT-----PRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (999)
T ss_dssp SCTTSCEEEEEEETTCEEC---G-----GGGGTC-----CCSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCCceeEEEecCCcchh---h-----hhccCC-----CcceEEEeccceEEEEEEHHHHHHHHHhChH
Confidence 3567789999999 5 566676 999999999999999999999998 766653
No 52
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.24 E-value=2.1e-11 Score=138.75 Aligned_cols=130 Identities=10% Similarity=0.045 Sum_probs=109.8
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHhhcchhhccccHHHHHHHHhcce-eEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec
Q 042686 410 SFISDLSLDAEKEVKRHMGRKLLRKVEEFQNWDEFSLDYLFGCLK-PVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK 488 (596)
Q Consensus 410 ~il~~Lp~~Lr~~i~~~l~~~~L~~v~lF~~l~~~~l~~L~~~l~-~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~ 488 (596)
.++.. |+..|.+.......+.++++++|++++++.+..++..++ .+.|++|++|+++||.++.+|+|.+|.|+++..+
T Consensus 13 ~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g 91 (694)
T 3cf6_E 13 MILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG 91 (694)
T ss_dssp HHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred HHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC
Confidence 44543 344444444445578899999999999999999999998 7899999999999999999999999999998765
Q ss_pred -ceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEec-eEEEEEechHhHhh-hhcCcch
Q 042686 489 -LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALT-DVEAFTLKADDVKC-ALLFRPV 552 (596)
Q Consensus 489 -~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t-~~~l~~L~~~df~~-~~~f~~~ 552 (596)
..+...++|++|| |. +++.+. +++++++|.+ +|+++.|++++|.. +.++|.+
T Consensus 92 ~~il~~l~~Gd~fG----e~---al~~~~-----~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 92 KGVVCTLHEGDDFG----KL---ALVNDA-----PRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp TEEEEEEETTCEEC----HH---HHHHTC-----BCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred CEEEEEeCCCCEee----hH---HHhCCC-----CceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 3566779999999 57 777666 8999999999 59999999999999 8888776
No 53
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.20 E-value=7.5e-11 Score=116.77 Aligned_cols=120 Identities=13% Similarity=0.027 Sum_probs=93.4
Q ss_pred HHHHHHHHhcce---eEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhHhhcc
Q 042686 443 EFSLDYLFGCLK---PVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDWAKNE 514 (596)
Q Consensus 443 ~~~l~~L~~~l~---~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~al~~ 514 (596)
+++++.+..... .+.|++|++|+++|+.++.+|||.+|.|+++..+ ..+...++|++|| +. +++.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G----~~---~~~~ 102 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFG----VL---SLLT 102 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEES----CH---HHHS
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEc----ch---HHhC
Confidence 678888888888 9999999999999999999999999999997642 2445679999999 46 6665
Q ss_pred ccccCCCC--cccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhhcc
Q 042686 515 NSYQQLPI--SDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRAND 574 (596)
Q Consensus 515 ~~~~~~~~--~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~~~ 574 (596)
+. + +.++++|+++|+++.+++++|.. +.++|++.......+....+...++...+
T Consensus 103 ~~-----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l 160 (243)
T 3la7_A 103 GN-----KSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETL 160 (243)
T ss_dssp SC-----CSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-----CCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 4 45899999999999999999999 88999985533333333333344443333
No 54
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.18 E-value=4.1e-11 Score=118.98 Aligned_cols=134 Identities=11% Similarity=-0.012 Sum_probs=104.8
Q ss_pred hhcchhhccccHHHHHHHHhcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchh
Q 042686 432 LRKVEEFQNWDEFSLDYLFGCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKE 506 (596)
Q Consensus 432 L~~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~ee 506 (596)
+.+...+..++++.++.+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+ ..+...++|++|| +
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G---~- 86 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIG---K- 86 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEEC---C-
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEe---e-
Confidence 444445588999999999999999999999999999999999999999999997642 2445679999999 4
Q ss_pred hhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcCcchhHHHHHHHHHHHHHHHhhhhccccCCCC
Q 042686 507 LIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLFRPVSKEAAALIQLVWRFKKHKRANDKNAKPR 580 (596)
Q Consensus 507 l~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f~~~~k~~~~~~q~~~~~~~~r~~~~~~~~~~ 580 (596)
+ + .. .++++++|+++|+++.+++++|.. +.++|++............+...++...+...+++
T Consensus 87 ~-----l-~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 150 (250)
T 3e6c_C 87 L-----Y-PT-----GNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPT 150 (250)
T ss_dssp C-----S-CC-----SCCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred e-----c-CC-----CCceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 3 1 12 267899999999999999999999 89999985544444444445555555555444443
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.16 E-value=8.6e-11 Score=139.67 Aligned_cols=109 Identities=13% Similarity=0.072 Sum_probs=98.1
Q ss_pred HHHHHhhcchhhccccHHHHHHHHhcceeEE-eCCCCEEEecCCCcCeEEEEEeeEEEEeeec-ceeeecCCCCeecCCc
Q 042686 427 MGRKLLRKVEEFQNWDEFSLDYLFGCLKPVV-FSERTVIIQEGDPINVMTFVLQGKTWAYSKK-LSITIQRHQDHCDVRR 504 (596)
Q Consensus 427 l~~~~L~~v~lF~~l~~~~l~~L~~~l~~~~-~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-~~~~~~~~G~~FG~~~ 504 (596)
...+.++++|+|++++...++.|+..+.... +.+|++|++|||.++.+|||++|.|+|+... ..+..+++||+||
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~v~~L~~Gd~FG--- 410 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFG--- 410 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEEC---
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcceEEecCCCccc---
Confidence 4467899999999999999999999998765 4779999999999999999999999998754 5678899999999
Q ss_pred hhhhhHhhccccccCCCCcccEEEEece-EEEEEechHhHhh-hh
Q 042686 505 KELIDWAKNENSYQQLPISDRTVRALTD-VEAFTLKADDVKC-AL 547 (596)
Q Consensus 505 eel~~~al~~~~~~~~~~~~~tv~A~t~-~~l~~L~~~df~~-~~ 547 (596)
|+ |++.+. ||.+||+|.++ |++++++++||.. +.
T Consensus 411 -El---ALL~~~-----PR~aTV~a~~d~c~fl~i~k~df~~il~ 446 (999)
T 4f7z_A 411 -KL---ALVNDA-----PRAASIVLREDNCHFLRVDKEDGNRILR 446 (999)
T ss_dssp -GG---GGTCSC-----BCSSEEEESSSSEEEEEEEHHHHHHHHH
T ss_pred -ch---hhccCC-----CeeEEEEEecCceEEEEeeHHHHHHHHh
Confidence 68 999888 99999999985 9999999999988 54
No 56
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.15 E-value=8.1e-11 Score=106.92 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQK 364 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~ 364 (596)
.|..|+||++.|+ |||||||++|.|..+++++++.+++|+.++++++|.+++.+.+...
T Consensus 40 ~~~~a~yf~~~T~-----------------tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 40 TYPRALWWSVETA-----------------TTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CHHHHHHHHHHHH-----------------TTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CHHHHHHHHheee-----------------ecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999 9999999999999999999999999999999999999988765544
No 57
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.15 E-value=1.3e-10 Score=114.48 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=84.5
Q ss_pred ccccHHHHHHHHh--cceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhHh
Q 042686 439 QNWDEFSLDYLFG--CLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDWA 511 (596)
Q Consensus 439 ~~l~~~~l~~L~~--~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~a 511 (596)
++++++.+..++. .++.+.|++|++|+++||+++.+|||.+|.|+++..+ ..+... +|++|| +. +
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~G----e~---~ 73 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVI----MS---G 73 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEE----ES---B
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEec----ch---h
Confidence 3678889998885 5999999999999999999999999999999997642 234556 999999 56 6
Q ss_pred hccccccCCCCc--ccEEEEe-ceEEEEEechHhHhh-hhcCcchhH
Q 042686 512 KNENSYQQLPIS--DRTVRAL-TDVEAFTLKADDVKC-ALLFRPVSK 554 (596)
Q Consensus 512 l~~~~~~~~~~~--~~tv~A~-t~~~l~~L~~~df~~-~~~f~~~~k 554 (596)
++.+. ++ ..++.|. ++|+++.|++++|.. +.++|++..
T Consensus 74 ~~~~~-----~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~ 115 (238)
T 2bgc_A 74 FIDTE-----TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFF 115 (238)
T ss_dssp CTTTC-----CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred hhcCC-----CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHH
Confidence 66544 43 6788888 599999999999999 889998854
No 58
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.06 E-value=1e-09 Score=96.12 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQK 364 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~ 364 (596)
|..|+||++.|+ ||+||||++|.|..+++++++.+++|..++++.++.+++.+.....
T Consensus 50 ~~~a~y~~~~T~-----------------tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 50 PIDALYFSVVTL-----------------TTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp HHHHHHHHHHHH-----------------TSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHh-----------------cceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999 9999999999999999999999999999999999999988754443
No 59
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.99 E-value=1.7e-09 Score=103.01 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=65.4
Q ss_pred EEeCCCCEEEecCCCcCeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEe
Q 042686 456 VVFSERTVIIQEGDPINVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRAL 530 (596)
Q Consensus 456 ~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~ 530 (596)
+.|++|++|+++||+++.+|+|.+|.|+++..+ ..+...++|++|| | - ++.+. +++++++|.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G---e-~----~~~~~-----~~~~~~~A~ 68 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFG---E-E----ALEGK-----AYRYTAEAM 68 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEEC---G-G----GGTCS-----BCSSEEEES
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEec---h-h----hhCCC-----CceeEEEEC
Confidence 579999999999999999999999999997642 2456679999999 4 2 34455 889999999
Q ss_pred ceEEEEEechHhHh
Q 042686 531 TDVEAFTLKADDVK 544 (596)
Q Consensus 531 t~~~l~~L~~~df~ 544 (596)
++|+++.+++++|.
T Consensus 69 ~~~~v~~i~~~~~~ 82 (195)
T 3b02_A 69 TEAVVQGLEPRAMD 82 (195)
T ss_dssp SSEEEEEECGGGCC
T ss_pred CcEEEEEEcHHHcC
Confidence 99999999999987
No 60
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.98 E-value=1.6e-10 Score=99.32 Aligned_cols=59 Identities=12% Similarity=0.252 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQK 364 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~ 364 (596)
.|..|+||++.|+ ||+||||++|.+..+++++++.+++|..++++.+|.+++.+.+..+
T Consensus 40 ~~~~a~y~~~~T~-----------------tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETA-----------------TTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGG-----------------GCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHH-----------------hcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667999999999 9999999999999999999999999999999999999988766544
No 61
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.92 E-value=2.2e-09 Score=88.17 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEI 359 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i 359 (596)
|..|+||++.|+ ||+||||+.|.|..+++++++.++.|..++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~-----------------tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTI-----------------ATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHH-----------------TTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----------------cccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999 99999999999999999999999999999999999998765
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.90 E-value=2.7e-09 Score=90.55 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARS 362 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~ 362 (596)
|..|+||++.|+ ||+||||+.|.+..+++++++.+++|..++++++|.++..++..
T Consensus 33 ~~~a~yf~~~T~-----------------tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 33 PIDALYFSVVTL-----------------TTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHH-----------------TTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH-----------------HccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 678999999999 99999999999999999999999999999999999998877643
No 63
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.84 E-value=4.7e-09 Score=100.42 Aligned_cols=82 Identities=21% Similarity=0.145 Sum_probs=65.5
Q ss_pred HHhcceeEEeCCCCEEEecCCCc--CeEEEEEeeEEEEeeec-----ceeeecCCCCeecCCchhhhhHhhccccccCCC
Q 042686 449 LFGCLKPVVFSERTVIIQEGDPI--NVMTFVLQGKTWAYSKK-----LSITIQRHQDHCDVRRKELIDWAKNENSYQQLP 521 (596)
Q Consensus 449 L~~~l~~~~~~~ge~I~~~Gd~~--~~~yfI~~G~v~v~~~~-----~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~ 521 (596)
|...++.+.|++|++|+++||++ +.+|+|.+|.++++... ..+...++|++|| + - . +.+.
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G---~-~---~-l~~~----- 67 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFG---E-E---A-LFGQ----- 67 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEEC---T-H---H-HHTC-----
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEee---e-h---h-cCCC-----
Confidence 34667889999999999999999 99999999999997642 2345679999999 5 3 2 3344
Q ss_pred CcccEEEEeceEEEEEechHhHh
Q 042686 522 ISDRTVRALTDVEAFTLKADDVK 544 (596)
Q Consensus 522 ~~~~tv~A~t~~~l~~L~~~df~ 544 (596)
+++++++|+++|+++.+ +++|.
T Consensus 68 ~~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 68 ERIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp CBCSEEEESSCEEEEEC-CSSCC
T ss_pred CcceEEEEcccEEEEEE-hHhcC
Confidence 78899999999999999 98876
No 64
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.82 E-value=8.3e-09 Score=104.92 Aligned_cols=60 Identities=8% Similarity=-0.115 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccC-CCC-CCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 288 KKLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQN-LET-SNDVGE----NIFAICMTNYGVVLFVFLIGRMQTEIAR 361 (596)
Q Consensus 288 ~~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGyg-di~-p~~~~E----~~f~i~~mi~G~~~fa~iig~i~~~i~~ 361 (596)
..+..|++|+++|+ ||+||| |+. |.+..- ..|.+++++.|.++.+..+|-+.+-...
T Consensus 179 ~s~~~a~~~~~~~~-----------------T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 179 GTLGESFYTLFQVM-----------------TLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAI 241 (285)
T ss_dssp SSHHHHHHHHHHHH-----------------TTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHH-----------------HhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667999999999 999999 985 655433 7888899999999999998888776654
Q ss_pred hHH
Q 042686 362 SQK 364 (596)
Q Consensus 362 ~~~ 364 (596)
..+
T Consensus 242 ~~~ 244 (285)
T 3rvy_A 242 LNQ 244 (285)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.79 E-value=1.6e-10 Score=108.27 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQKINQ 367 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~~~~~ 367 (596)
.|..|+||++.|+ |||||||++|.|..+++++++.+++|++++++++|.+++.+.+...+.+
T Consensus 67 ~~~~a~yf~~~T~-----------------tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~ 128 (166)
T 3pjs_K 67 TYPRALWWSVETA-----------------TTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQ 128 (166)
T ss_dssp STTTTTTTTHHHH-----------------SCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHH
T ss_pred CHHHHHHHHHHHh-----------------ccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667999999999 9999999999999999999999999999999999999998876655433
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.67 E-value=4.9e-08 Score=99.73 Aligned_cols=55 Identities=7% Similarity=0.075 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIA 360 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~ 360 (596)
.|..|+||++.|+ ||+||||++|.+...++++++.+++|.+++|+.+|.+.+.++
T Consensus 82 s~~~a~yfs~vT~-----------------tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 82 SFTDAFFFSVQTM-----------------ATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp CHHHHHHHHHHHH-----------------TTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhhe-----------------eccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999 999999999999999999999999999999999998777664
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.60 E-value=3.2e-08 Score=102.23 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARS 362 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~ 362 (596)
|..|+||++.|+ |||||||++|.+...++++++.+++|.+++|+++|.+.+.+...
T Consensus 97 ~~~a~yfs~vT~-----------------tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 97 FVGAFFFSVETL-----------------ATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp THHHHHHHTTTT-----------------TTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhHhhhheee-----------------eecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999 99999999999999999999999999999999999998877644
No 68
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.49 E-value=2.9e-07 Score=93.84 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQ 363 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~ 363 (596)
.|..|+||+++|+ |||||||++|.|...++|+++.+++|+.+++++++.+++.+.+..
T Consensus 115 ~~~~a~yf~~~t~-----------------tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~ 172 (309)
T 3um7_A 115 DLGSAFFFSGTII-----------------TTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSL 172 (309)
T ss_dssp SHHHHHHHHHHHH-----------------TSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheee-----------------eecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4889999999999 999999999999999999999999999999999999999886543
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.39 E-value=3.9e-07 Score=93.78 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARS 362 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~ 362 (596)
.|..|+||++.|| |||||||+.|.+...++++++.+++|.+++|+++|.+.+.++..
T Consensus 78 s~~~a~y~s~vT~-----------------tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETL-----------------ATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHH-----------------TTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEe-----------------ccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999 99999999999999999999999999999999999998777653
No 70
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.25 E-value=1.6e-06 Score=87.01 Aligned_cols=56 Identities=16% Similarity=0.228 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIAR 361 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~ 361 (596)
.|..|+||+++|+ |||||||++|.|...++|+++.+++|+.+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~-----------------tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVL-----------------STTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHH-----------------TTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Chhcchhheeeee-----------------eccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999 9999999999999999999999999999999999998765543
No 71
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.19 E-value=4.9e-07 Score=92.11 Aligned_cols=58 Identities=7% Similarity=0.086 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGEN------IFAICMTNYGVVLFVFLIGRMQTEIARSQ 363 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~------~f~i~~mi~G~~~fa~iig~i~~~i~~~~ 363 (596)
|+.|+||++.|+ |||||||++|.+...+ +++++.+++|+.+++++++.+++.+....
T Consensus 225 ~~da~y~~~vTl-----------------tTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~ 287 (309)
T 3um7_A 225 KLEAIYFVIVTL-----------------TTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVS 287 (309)
T ss_dssp HHHHHHHHHHHH-----------------TTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhe-----------------eccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999 9999999999988876 59999999999999999999888776555
Q ss_pred H
Q 042686 364 K 364 (596)
Q Consensus 364 ~ 364 (596)
+
T Consensus 288 ~ 288 (309)
T 3um7_A 288 R 288 (309)
T ss_dssp T
T ss_pred H
Confidence 4
No 72
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.16 E-value=5.5e-06 Score=92.14 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGR-MQTEIA 360 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~-i~~~i~ 360 (596)
|..|+||++.|| ||+||||++|.|...++++++.+++|++++++.++. +.+.+.
T Consensus 52 ~~~~~y~~~~t~-----------------tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 52 FMAGIYWTITVM-----------------TTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp HHHHHHHHHHHH-----------------TTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhhheeeeee-----------------eeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999 999999999999999999999999999999999998 555543
No 73
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.15 E-value=5.7e-06 Score=85.30 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSN--DVGENIFAICMTNYGVVLFVFLIGRMQTEIARS 362 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~--~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~ 362 (596)
+..++||++.|+ |||||||+.|. +..-++++++.+++|.++.|+..|-+.+-++..
T Consensus 92 f~~af~fSv~T~-----------------TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 92 FVSAFLFSIETE-----------------TTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp TTHHHHHHHHHH-----------------SCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhhheee-----------------eeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 346999999999 99999999996 677889999999999999999999876655443
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.07 E-value=2.7e-06 Score=85.42 Aligned_cols=55 Identities=11% Similarity=0.139 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVG-------ENIFAICMTNYGVVLFVFLIGRMQTEIAR 361 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~-------E~~f~i~~mi~G~~~fa~iig~i~~~i~~ 361 (596)
|+.|+||++.|+ |||||||+.|.+.. -++++++.+++|..+++++++.+++++..
T Consensus 202 ~~da~y~~~iTl-----------------tTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 202 FLESFYFCFISL-----------------STIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHHHHHH-----------------TTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhhheeeee-----------------ecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999 99999999998875 39999999999999999999999886643
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.04 E-value=1e-05 Score=83.51 Aligned_cols=55 Identities=13% Similarity=0.322 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 290 LIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETS--NDVGENIFAICMTNYGVVLFVFLIGRMQTEIAR 361 (596)
Q Consensus 290 Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p--~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~ 361 (596)
+..++||++.|+ ||+||||+.| .+..-++++.+.+++|.++.|+..|-+.+-+++
T Consensus 95 f~~af~fSv~T~-----------------TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 95 FVAAFLFSIETQ-----------------TTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp HHHHHHHHHHHH-----------------SCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhheeeeee-----------------EeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567999999999 9999999986 488889999999999999999999877665543
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.93 E-value=6.1e-07 Score=93.13 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042686 291 IRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIARSQ 363 (596)
Q Consensus 291 i~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~~~ 363 (596)
..|+||++.|+ ||+||||++|.|..+++++++.+++|..+++++++.+++.+.+..
T Consensus 47 ~~a~y~~~~t~-----------------tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 47 TVSLYWTFVTI-----------------ATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp STTHHHHHHHH-----------------TTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred HHHHHHHHHHh-----------------hcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999 999999999999999999999999999999999999988776543
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.43 E-value=0.00083 Score=65.45 Aligned_cols=76 Identities=8% Similarity=0.008 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHHhhcccccccCcchhhhhhcc
Q 042686 30 RLMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISHSKLHMEKGNQREKFKAIF 109 (596)
Q Consensus 30 ~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~y~~~~~~~~~~~~~ 109 (596)
+.+|.+++++++.+++..-++- . ..+.+....+..+|.++-++|.+|++++....
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~~----~-------~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-------------- 66 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGATT----Y-------ELDPLFLETIHLLDYGITIFFVIEILIRFIGE-------------- 66 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCC----S-------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred chHHHHHHHHHHHHHHHHHHcc----C-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------
Confidence 4678888888888887766551 0 01111123467789999999999999997531
Q ss_pred cCCCccccChhHHhh-hhhhhhhhhccch
Q 042686 110 KGEGEVPEDPMGRMR-KLFLIDCLAILPI 137 (596)
Q Consensus 110 ~~~g~~V~d~~~Ia~-~~F~lDlls~lP~ 137 (596)
| ++++-.+ +|=++|+++++|.
T Consensus 67 ---~----~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 67 ---K----QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp ---------------CHHHHHHHHHHHHT
T ss_pred ---C----chhHHhcCCcHHHHHHHHHHH
Confidence 1 1222222 7788998877764
No 78
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=96.17 E-value=0.0087 Score=53.10 Aligned_cols=107 Identities=11% Similarity=0.140 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHHhhcccccccCcchhhhhhcc
Q 042686 30 RLMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISHSKLHMEKGNQREKFKAIF 109 (596)
Q Consensus 30 ~~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~y~~~~~~~~~~~~~ 109 (596)
+.+|.+++++++.+.+..-++-. |. .+......+..+|.++-++|.+|.++++-.+-
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~-~~---------~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~~------------- 62 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYT-MQ---------LSGEYLVRLYLVDLILVIILWADYAYRAYKSG------------- 62 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SC---------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-hh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------
Confidence 45788888888877666554410 00 11111234677999999999999999988531
Q ss_pred cCCCccccChhHHhhhhhhhhhhhccchhhhhhhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHhHhhh
Q 042686 110 KGEGEVPEDPMGRMRKLFLIDCLAILPIPQVLVIFLVIFGIRGPGFSTAMTFFVLQYSLRVIRTYFLFTHA 180 (596)
Q Consensus 110 ~~~g~~V~d~~~Ia~~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rl~Rl~Rl~~l~~~~ 180 (596)
++++-.+ |=++|+++++|+..-.. . . ..+..++.+|++|++|++|+.+..
T Consensus 63 --------~~~~y~~-~niiDllailp~~~~~~---~-~--------~~l~~lr~lRllRv~Rvlkl~r~~ 112 (132)
T 1ors_C 63 --------DPAGYVK-KTLYEIPALVPAGLLAL---I-E--------GHLAGLGLFRLVRLLRFLRILLII 112 (132)
T ss_dssp --------STTTTTT-TCGGGTGGGSCHHHHHH---H-H--------HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHH-HHHHHHHHHHHHHHHHH---h-c--------chHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111122 55699999999863322 1 1 112223445555566666555543
No 79
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=95.87 E-value=0.015 Score=52.62 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecCCcceeeecCCCcchhhhHHHHHHHHHHHHHHhhcccccccCcchhhhhhccc
Q 042686 31 LMNVTAMILDVTAIILDPLFFYILVLDDEKKCIHWDKTLGITATVIRSVLDFLKLGHFISHSKLHMEKGNQREKFKAIFK 110 (596)
Q Consensus 31 ~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~D~~f~~Di~l~f~t~y~~~~~~~~~~~~~~ 110 (596)
.||.+++++++.+++++-+..+.+ . +......+..+|.++-++|.+|.++++..+-
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~--------i--~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~-------------- 77 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQ--------L--SGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 77 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC--------C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHh--------h--chhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------
Confidence 478888877777766655441110 0 0011234677899999999999999988642
Q ss_pred CCCccccChhHHhhhhhhhhhhhccchhh
Q 042686 111 GEGEVPEDPMGRMRKLFLIDCLAILPIPQ 139 (596)
Q Consensus 111 ~~g~~V~d~~~Ia~~~F~lDlls~lP~~~ 139 (596)
|+++-.++ =++|++|++|+..
T Consensus 78 -------~k~~f~~~-~iiDllailP~~~ 98 (147)
T 2kyh_A 78 -------DPAGYVKK-TLYEIPALVPAGL 98 (147)
T ss_dssp -------CHHHHHHH-STTTHHHHCCHHH
T ss_pred -------cHHHHHHH-HHHHHHHHHHHHH
Confidence 12222222 3689999999864
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=60.30 E-value=42 Score=27.77 Aligned_cols=48 Identities=8% Similarity=-0.079 Sum_probs=36.2
Q ss_pred ceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 453 LKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 453 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
+....++||..+-..-....+++++++|++++..+++. ..+.+||.+=
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~-~~l~~Gd~i~ 85 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGAQ-RRLHQGDLLY 85 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTEE-EEECTTEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCEE-EEECCCCEEE
Confidence 34556788888866556678999999999988776553 5578888764
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=60.17 E-value=34 Score=32.31 Aligned_cols=68 Identities=9% Similarity=0.141 Sum_probs=51.7
Q ss_pred ceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEece
Q 042686 453 LKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTD 532 (596)
Q Consensus 453 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~ 532 (596)
+....+.||+.+=..-.+.+.+++|++|++++..+++. ..+.+||++= + .. ..+-.++|.++
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~~-~~l~~Gd~~~-----~-------p~-----~~~H~~~a~~~ 100 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENNK-KTISNGDFLE-----I-------TA-----NHNYSIEARDN 100 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSCE-EEEETTEEEE-----E-------CS-----SCCEEEEESSS
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCEE-EEECCCCEEE-----E-------CC-----CCCEEEEECCC
Confidence 44556899999987778899999999999988776544 5678888764 2 11 23456889999
Q ss_pred EEEEEe
Q 042686 533 VEAFTL 538 (596)
Q Consensus 533 ~~l~~L 538 (596)
+.++.+
T Consensus 101 ~~~l~i 106 (227)
T 3rns_A 101 LKLIEI 106 (227)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999877
No 82
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=53.86 E-value=58 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=31.6
Q ss_pred EeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 457 VFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 457 ~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
.+.+|..+-.......++++|++|++++..+++ ...+.+||.+=
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~-~~~l~~Gd~i~ 87 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITFDDQ-KIDLVPEDVLM 87 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEETTE-EEEECTTCEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEECCE-EEEecCCCEEE
Confidence 356776554444567889999999998877654 34578988764
No 83
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=49.00 E-value=44 Score=28.12 Aligned_cols=45 Identities=7% Similarity=0.033 Sum_probs=33.5
Q ss_pred eEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 455 PVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 455 ~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
...+.||..+-.. ...+++++|++|++++..+++ ...+++||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~g~-~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTDGE-TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEETTE-EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEECCE-EEEECCCCEEE
Confidence 4457788765433 377899999999998877543 45689999875
No 84
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=47.63 E-value=50 Score=26.93 Aligned_cols=46 Identities=11% Similarity=-0.048 Sum_probs=34.0
Q ss_pred eeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 454 KPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 454 ~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
-...+.||+.-.. ....++++|++|++++..++.....+.+||.+=
T Consensus 34 ~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~i~ 79 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGKKYVIEKGDLVT 79 (101)
T ss_dssp CEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCCEEEEETTCEEE
T ss_pred EEEEeCCCccccc--CCceEEEEEEeCEEEEEECCCCEEEECCCCEEE
Confidence 3556788876554 457899999999999887633445678988875
No 85
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=46.02 E-value=1e+02 Score=24.85 Aligned_cols=48 Identities=10% Similarity=0.035 Sum_probs=33.9
Q ss_pred ceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 453 LKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 453 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
+....+.||..+-..-....++++|++|.+++..+++. ..+.+|+.+=
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ 89 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQET-YRVAEGQTIV 89 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTEE-EEEETTCEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCEE-EEECCCCEEE
Confidence 34456788887654444467899999999988766543 4578888764
No 86
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=41.45 E-value=36 Score=28.34 Aligned_cols=49 Identities=12% Similarity=-0.099 Sum_probs=33.0
Q ss_pred ceeEEeCCCCEEEecCCC-cCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 453 LKPVVFSERTVIIQEGDP-INVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 453 l~~~~~~~ge~I~~~Gd~-~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
+....+.||..+-..-.. ..++++|++|++++...+.....+.+||.+=
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEE
Confidence 345567888876544344 4789999999998876333345668888764
No 87
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=40.87 E-value=23 Score=28.36 Aligned_cols=48 Identities=6% Similarity=-0.135 Sum_probs=32.8
Q ss_pred eeEEeCCCCEE-EecCCCcCeEEEEEeeEEEEeeecc-eeeecCCCCeec
Q 042686 454 KPVVFSERTVI-IQEGDPINVMTFVLQGKTWAYSKKL-SITIQRHQDHCD 501 (596)
Q Consensus 454 ~~~~~~~ge~I-~~~Gd~~~~~yfI~~G~v~v~~~~~-~~~~~~~G~~FG 501 (596)
....++||... .+.-+...++++|++|++++..++. ....+.+||.+=
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEE
Confidence 34567888765 2333333459999999998877653 456678988875
No 88
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=40.85 E-value=1.3e+02 Score=24.14 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=33.6
Q ss_pred ceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 453 LKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 453 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
+....+.||..+-..-....++++|++|++++..+++ ...+.+|+.+=
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~ 83 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV-IKVLTAGDSFF 83 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTE-EEEECTTCEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCE-EEEeCCCCEEE
Confidence 3445678887754333447789999999998877544 45578888764
No 89
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=39.54 E-value=25 Score=22.59 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 042686 553 SKEAAALIQLVWRFKKHKRA 572 (596)
Q Consensus 553 ~k~~~~~~q~~~~~~~~r~~ 572 (596)
+++++.++|.+||.+.-|..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999988654
No 90
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=38.83 E-value=55 Score=27.11 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=34.7
Q ss_pred ceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 453 LKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 453 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
+....+.||..+-..-....++++|++|++++..+++. ..+.+|+.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEET-RVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTEE-EEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCEE-EEeCCCCEEE
Confidence 34556788887754445568899999999988776543 5568888764
No 91
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=37.73 E-value=28 Score=21.60 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 042686 553 SKEAAALIQLVWRFKKHKR 571 (596)
Q Consensus 553 ~k~~~~~~q~~~~~~~~r~ 571 (596)
+++++..+|.+||.+..|.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6799999999999998764
No 92
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=35.86 E-value=25 Score=30.05 Aligned_cols=43 Identities=5% Similarity=-0.001 Sum_probs=30.5
Q ss_pred eCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 458 FSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 458 ~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
..||..-.+..+ .+++++|++|++.+..++.....+++||.+-
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ 98 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARLVDPDGTVHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEEECTTCCEEEEETTCEEE
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEEEECCCeEEEECCCCEEE
Confidence 455655544332 3899999999998887554456789999886
No 93
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=35.41 E-value=38 Score=27.83 Aligned_cols=46 Identities=7% Similarity=0.008 Sum_probs=31.2
Q ss_pred EEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 456 VVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 456 ~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
..+.||...-..-....++++|++|++++..+++....+.+|+.+=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEETTSCCEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCEEEEEeCCCCEEE
Confidence 3456666542222346789999999998877765543678888764
No 94
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=34.83 E-value=67 Score=25.65 Aligned_cols=48 Identities=10% Similarity=-0.018 Sum_probs=33.6
Q ss_pred ceeEEeCCCCEEEec--CCC-cCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 453 LKPVVFSERTVIIQE--GDP-INVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 453 l~~~~~~~ge~I~~~--Gd~-~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
+....+.||..+-.. -.. ..++++|++|++++..+++. ..+.+|+.+=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGHT-QALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTEE-EEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCEE-EEeCCCCEEE
Confidence 344567888876543 334 67899999999988776533 4568888764
No 95
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=33.76 E-value=43 Score=30.45 Aligned_cols=49 Identities=12% Similarity=-0.064 Sum_probs=33.5
Q ss_pred ceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecC
Q 042686 453 LKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDV 502 (596)
Q Consensus 453 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~ 502 (596)
+....++||...-.--....++.+|++|++++..++.....+++||.+ +
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~~~L~~GDsi-~ 129 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAKRTVRQGGII-V 129 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCEEEECTTCEE-E
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeEEEECCCCEE-E
Confidence 344557777654333334567889999999988764344668999988 5
No 96
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=32.64 E-value=55 Score=36.87 Aligned_cols=55 Identities=7% Similarity=0.101 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhhcccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042686 289 KLIRCLRWGLQNLRFAVFYMAWIMITVHVISAFGQNLETSNDVGENIFAICMTNYGVVLFVFLIGRMQTEIAR 361 (596)
Q Consensus 289 ~Yi~slYwa~~tl~~~~~~~~~~~~~~~~~ttvGygdi~p~~~~E~~f~i~~mi~G~~~fa~iig~i~~~i~~ 361 (596)
....++++++.++ ++.| ++..|.+...+++.++.++++.++.+.--+++++++..
T Consensus 563 ~~~~~~~~~~~~l-----------------~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAF-----------------MQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTS-----------------CC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-----------------HhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3557888888888 7777 68899999999999999999999999999999988875
No 97
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=32.50 E-value=35 Score=29.01 Aligned_cols=43 Identities=5% Similarity=-0.094 Sum_probs=31.4
Q ss_pred eCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 458 FSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 458 ~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
..||..-+.. +..++++.|++|++.+...+......++||.|-
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~~ 91 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQADADPVKIGPGSIVS 91 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEETTCCCEEECTTEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEeCCCeEEEECCCCEEE
Confidence 4555554444 334599999999998877765566789999886
No 98
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=32.20 E-value=66 Score=27.92 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=33.3
Q ss_pred eeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 454 KPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 454 ~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
....+.||..+-..-....++++|++|++.+..+++....+.+|+.+=
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEECCEEEEEECCCCEEE
Confidence 344567777663333345789999999998877665435678888775
No 99
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=32.14 E-value=43 Score=27.00 Aligned_cols=69 Identities=7% Similarity=-0.056 Sum_probs=40.1
Q ss_pred eCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEE
Q 042686 458 FSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFT 537 (596)
Q Consensus 458 ~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~ 537 (596)
..+|+...+..+...++++|++|++++..++.....+.+||.+= + ..+. + -..++.+++.++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~-----i-----p~~~-----~--H~~~~~~~~~~l~ 97 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAV-----V-----PKSV-----S--HRPRSENGCSLVL 97 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETTSCEEEECTTEEEE-----E-----CTTC-----C--EEEEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECCCcEEEECCCCEEE-----E-----CCCC-----c--EeeEeCCCeEEEE
Confidence 34555333333334899999999998877662345678988765 1 1111 2 2334456788887
Q ss_pred echHhH
Q 042686 538 LKADDV 543 (596)
Q Consensus 538 L~~~df 543 (596)
++....
T Consensus 98 i~~~~~ 103 (107)
T 2i45_A 98 IELSDP 103 (107)
T ss_dssp EECC--
T ss_pred EECCCc
Confidence 766543
No 100
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=31.46 E-value=1e+02 Score=23.90 Aligned_cols=47 Identities=4% Similarity=-0.104 Sum_probs=32.1
Q ss_pred eeEEeCCCCEEEecCCC-cCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 454 KPVVFSERTVIIQEGDP-INVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 454 ~~~~~~~ge~I~~~Gd~-~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
....+.||..+-..-.. ..++++|++|++.+..+++ ...+.+||.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~-~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE-EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE-EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEE
Confidence 44567888776433334 3679999999998776543 35568888764
No 101
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=31.21 E-value=48 Score=28.55 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=31.4
Q ss_pred eEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 455 PVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 455 ~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
...+.||..-.+ ...+++++|++|++++..+++. ..+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~g~~-~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHEGET-MIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEETTEE-EEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEECCEE-EEECCCcEEE
Confidence 345677743232 3478999999999988877544 4689999886
No 102
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=30.99 E-value=71 Score=30.22 Aligned_cols=45 Identities=4% Similarity=-0.144 Sum_probs=30.8
Q ss_pred EeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 457 VFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 457 ~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
.+.||-..=.--.+.+++|+|++|.+++..++......++|+.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLRNAPDLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEETTSCCEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEECCCCEEecCCCCEEE
Confidence 344444432223467899999999998877755566778888764
No 103
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=29.75 E-value=1.6e+02 Score=25.72 Aligned_cols=60 Identities=8% Similarity=0.083 Sum_probs=41.2
Q ss_pred EecCCCcCeEEEEEeeEEEEeeec-------ceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEE
Q 042686 465 IQEGDPINVMTFVLQGKTWAYSKK-------LSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFT 537 (596)
Q Consensus 465 ~~~Gd~~~~~yfI~~G~v~v~~~~-------~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~ 537 (596)
.+..+..|++|+|++|++.+...+ .....+++|+++=|.+. ---+-.|.++|.++.
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkG-----------------veH~p~a~~e~~vLL 106 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAE-----------------CWFYSITQKDTKMMY 106 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTT-----------------CEEEEEECTTCEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCC-----------------ccCcccCCCceEEEE
Confidence 455677899999999999886542 12355699888863211 112456678899988
Q ss_pred echH
Q 042686 538 LKAD 541 (596)
Q Consensus 538 L~~~ 541 (596)
+...
T Consensus 107 iEp~ 110 (140)
T 3d0j_A 107 VQDS 110 (140)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8877
No 104
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=29.25 E-value=42 Score=27.74 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=25.8
Q ss_pred CCcCeEEEEEeeEEEEeeeccee-eecCCCCeec
Q 042686 469 DPINVMTFVLQGKTWAYSKKLSI-TIQRHQDHCD 501 (596)
Q Consensus 469 d~~~~~yfI~~G~v~v~~~~~~~-~~~~~G~~FG 501 (596)
...+++++|++|++++..+++.. ..+.+||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSSCEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEEEEEECCCCEEE
Confidence 45778999999999988776542 5678988875
No 105
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=29.05 E-value=96 Score=28.76 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 042686 162 FVLQYSLRVIRTYF 175 (596)
Q Consensus 162 ~~~~rl~Rl~Rl~~ 175 (596)
++++|++|++|+.+
T Consensus 102 lRllRllR~~r~~~ 115 (223)
T 1orq_C 102 VRLLRFLRILLIIS 115 (223)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666666665
No 106
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=27.58 E-value=88 Score=27.85 Aligned_cols=47 Identities=9% Similarity=-0.026 Sum_probs=33.0
Q ss_pred eeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 454 KPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 454 ~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
....+.||..+-..-....++++|++|++++..+++ ...+.+||.+=
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR-VEPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE-EEEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE-EEEECCCCEEE
Confidence 344567776654333457899999999998877654 34568888774
No 107
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=26.36 E-value=73 Score=28.76 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=35.0
Q ss_pred ceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeee---cceeeecCCCCeec
Q 042686 453 LKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSK---KLSITIQRHQDHCD 501 (596)
Q Consensus 453 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~---~~~~~~~~~G~~FG 501 (596)
+....+.||...-.....++++++|++|++++... +.....+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 45557888887655444568999999999887553 13345678988875
No 108
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=26.30 E-value=1.3e+02 Score=23.77 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=31.2
Q ss_pred eeEEeCCCCEEEecCCC-cCeE-EEEEeeEEEEeeecceeeecCCCCeec
Q 042686 454 KPVVFSERTVIIQEGDP-INVM-TFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 454 ~~~~~~~ge~I~~~Gd~-~~~~-yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
....+.||..+-..-.. ..++ +++++|++++..++.....+.+|+.+=
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ 85 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAVLV 85 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCEEE
Confidence 34457788776433333 2466 899999998877632345678888764
No 109
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=25.83 E-value=71 Score=28.94 Aligned_cols=46 Identities=15% Similarity=0.002 Sum_probs=31.9
Q ss_pred EEeCCCCEEE---ecCCCcCeEEEEEeeEEEEeeecc---eeeecCCCCeec
Q 042686 456 VVFSERTVII---QEGDPINVMTFVLQGKTWAYSKKL---SITIQRHQDHCD 501 (596)
Q Consensus 456 ~~~~~ge~I~---~~Gd~~~~~yfI~~G~v~v~~~~~---~~~~~~~G~~FG 501 (596)
..+.||...- .....+.++++|++|++++..++. ....+.+||.+=
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEE
Confidence 3566776543 223345799999999999877652 445789998875
No 110
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=25.65 E-value=2e+02 Score=26.79 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=36.2
Q ss_pred ceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 453 LKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 453 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
+....+.||..+-..-.+.++++++++|++++..+++ ...+.+||.+=
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~-~~~l~~Gd~i~ 202 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK-PFIVKKGESAV 202 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE-EEEEETTEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE-EEEECCCCEEE
Confidence 4556789999886555667789999999998877654 34568888764
No 111
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=24.20 E-value=69 Score=28.03 Aligned_cols=47 Identities=11% Similarity=-0.043 Sum_probs=32.9
Q ss_pred eeEEeCCCCE-E-EecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 454 KPVVFSERTV-I-IQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 454 ~~~~~~~ge~-I-~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
....+.||.. . .+......++++|++|++++..+++. ..+.+||.+=
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~-~~l~~Gd~i~ 97 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQ-YPIAPGDFVG 97 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTEE-EEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCEE-EEeCCCCEEE
Confidence 4456788874 2 23333568999999999988776543 5678888874
No 112
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=24.13 E-value=57 Score=29.48 Aligned_cols=32 Identities=13% Similarity=-0.046 Sum_probs=25.3
Q ss_pred CCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 469 DPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 469 d~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
..+.++++|++|++++...++. ..+.+|+.|=
T Consensus 108 h~gEE~~yVLeG~v~vtl~g~~-~~L~~Gds~~ 139 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTVCKNK-FLSVKGSTFQ 139 (166)
T ss_dssp CSEEEEEEEEESEEEEEETTEE-EEEETTCEEE
T ss_pred CCceEEEEEEEeEEEEEECCEE-EEEcCCCEEE
Confidence 4567899999999998887644 3678988875
No 113
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=23.37 E-value=82 Score=27.88 Aligned_cols=47 Identities=9% Similarity=-0.101 Sum_probs=32.7
Q ss_pred eeEEeCCCCEE--EecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 454 KPVVFSERTVI--IQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 454 ~~~~~~~ge~I--~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
....+.||... .+..+..+++++|++|++++..+++ ...+.+|+.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~-~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG-EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE-EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE-EEEeCCCCEEE
Confidence 44567788754 2333344799999999998877654 35578888765
No 114
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=22.49 E-value=64 Score=29.41 Aligned_cols=110 Identities=13% Similarity=0.027 Sum_probs=61.9
Q ss_pred HHHHHHHhccee----EEeCCCCEEE-e-cC---------CCcCeEEEEEeeEEEEeeec-c------eeeecCCCCeec
Q 042686 444 FSLDYLFGCLKP----VVFSERTVII-Q-EG---------DPINVMTFVLQGKTWAYSKK-L------SITIQRHQDHCD 501 (596)
Q Consensus 444 ~~l~~L~~~l~~----~~~~~ge~I~-~-~G---------d~~~~~yfI~~G~v~v~~~~-~------~~~~~~~G~~FG 501 (596)
+-+.+....+++ +....+++++ . .| +..++++++++|.+.+...+ . .-..+++|+.|=
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfl 91 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYL 91 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEE
Confidence 345555666666 4433356553 2 22 34578999999999886554 2 135569998885
Q ss_pred CCchhhhhHhhccccccCCCCcccEEEEeceEEEEEechHhHhh-hhcC------------------cchhHHHHHHHHH
Q 042686 502 VRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKADDVKC-ALLF------------------RPVSKEAAALIQL 562 (596)
Q Consensus 502 ~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~~df~~-~~~f------------------~~~~k~~~~~~q~ 562 (596)
+ +. .-+-+-++.+++..+.+.++.-.. ...+ .++.+--...++.
T Consensus 92 -----l------P~------gvpHsP~r~~e~v~lviErkR~~~~~D~~~wyc~~c~~~~~e~~f~~~dl~~ql~~~~~~ 154 (176)
T 1zvf_A 92 -----L------PG------NVPHSPVRFADTVGIVVEQDRPGGENDKIRWYCSHCRQVVHESELQMLDLGTQVKEAILD 154 (176)
T ss_dssp -----E------CT------TCCEEEEECTTCEEEEEEECCCSSSCCEEEEECTTTCCEEEEEECCSSSTTHHHHHHHHH
T ss_pred -----c------CC------CCCcCCcccCCcEEEEEEecCCCCCccceEEEcCCCCCEEEEEEEEEechhHhHHHHHHH
Confidence 2 11 111233345677777776655443 2221 1234456666676
Q ss_pred HHHHHHhh
Q 042686 563 VWRFKKHK 570 (596)
Q Consensus 563 ~~~~~~~r 570 (596)
.+...+.|
T Consensus 155 f~~~~e~r 162 (176)
T 1zvf_A 155 FENDVEKR 162 (176)
T ss_dssp HHTCHHHH
T ss_pred HhcChhhc
Confidence 66666654
No 115
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=22.13 E-value=1.4e+02 Score=26.75 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=31.7
Q ss_pred eEEeCCCCEEEe--cCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 455 PVVFSERTVIIQ--EGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 455 ~~~~~~ge~I~~--~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
...++||...-. -.....++++|++|++++..+++. ..+.+||.+=
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~~-~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQW-HELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTEE-EEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCEE-EEeCCCCEEE
Confidence 345677776542 223357999999999988776543 4678988764
No 116
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=21.37 E-value=2.5e+02 Score=27.35 Aligned_cols=86 Identities=10% Similarity=-0.002 Sum_probs=56.1
Q ss_pred hcceeEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeee-cCCCCeecCCchhhhhHhhccccccCCCCcccEEEE
Q 042686 451 GCLKPVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITI-QRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRA 529 (596)
Q Consensus 451 ~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~-~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A 529 (596)
..+.....++|+..-.+-+...-..+++.|.+.|..+++.... ....+.|. + .--.++--+. -...+++|
T Consensus 29 ~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~---~-~~p~~lYvp~-----g~~v~i~a 99 (270)
T 2qjv_A 29 VGFDVWQLXAGESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFE---R-IPAYSVYLPH-----HTEAXVTA 99 (270)
T ss_dssp CEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGG---C-SCCCEEEECS-----SCCEEEEE
T ss_pred eEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEECCEEEecccccccccc---C-CCCcEEEECC-----CCEEEEEe
Confidence 3456677899998876666555566677999988877665544 35566775 2 1001322222 34788999
Q ss_pred eceEEEEEechHhHhh
Q 042686 530 LTDVEAFTLKADDVKC 545 (596)
Q Consensus 530 ~t~~~l~~L~~~df~~ 545 (596)
.++++++..+...=..
T Consensus 100 ~~~~~~~v~sAp~~~~ 115 (270)
T 2qjv_A 100 ETDLELAVCSAPGFGE 115 (270)
T ss_dssp SSSEEEEEEEEECCSC
T ss_pred cCCceEEEEeeecCCc
Confidence 9999999988765433
No 117
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=21.16 E-value=86 Score=28.54 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=24.8
Q ss_pred CcCeEEEEEeeEEEEeeecc---eeeecCCCCeec
Q 042686 470 PINVMTFVLQGKTWAYSKKL---SITIQRHQDHCD 501 (596)
Q Consensus 470 ~~~~~yfI~~G~v~v~~~~~---~~~~~~~G~~FG 501 (596)
+.++++++++|.+.+...++ ....+++|+.|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEE
Confidence 57899999999998866442 345679999985
No 118
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=20.90 E-value=1.1e+02 Score=29.07 Aligned_cols=50 Identities=10% Similarity=-0.064 Sum_probs=36.5
Q ss_pred hcceeEEeCCCCEEEe-cCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 451 GCLKPVVFSERTVIIQ-EGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 451 ~~l~~~~~~~ge~I~~-~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
..+....++||..+=. +-....+.++|++|++.+..+++. ..+.+||++-
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~~-~~l~~GD~~~ 215 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENY-YPVTAGDIIW 215 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEE-EEEETTCEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCEE-EEcCCCCEEE
Confidence 3456667899987753 445567899999999977766544 4678999875
No 119
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=20.74 E-value=1.8e+02 Score=22.46 Aligned_cols=52 Identities=6% Similarity=0.049 Sum_probs=33.7
Q ss_pred cCeEEEEEeeEEEEeeecceeeecCCCCeecCCchhhhhHhhccccccCCCCcccEEEEeceEEEEEech
Q 042686 471 INVMTFVLQGKTWAYSKKLSITIQRHQDHCDVRRKELIDWAKNENSYQQLPISDRTVRALTDVEAFTLKA 540 (596)
Q Consensus 471 ~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG~~~eel~~~al~~~~~~~~~~~~~tv~A~t~~~l~~L~~ 540 (596)
..+++++++|.+.+..+++. ..+.+|+.+= + +. ...-.+.+.+++.++.++.
T Consensus 50 ~~e~~~v~~G~~~~~~~~~~-~~l~~Gd~~~-----i-------p~-----~~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFRDQN-ITLQAGEMYV-----I-------PK-----GVEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp CCEEEEEEESEEEEECSSCE-EEEETTEEEE-----E-------CT-----TCCBEEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEECCEE-EEEcCCCEEE-----E-------CC-----CCeEeeEcCCCCEEEEEEc
Confidence 37899999999987766543 4467888764 1 11 1223345557888887754
No 120
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=20.18 E-value=1.1e+02 Score=25.45 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=30.3
Q ss_pred eEEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 455 PVVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 455 ~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
...++||...-.--....++++|++|++++..+++. ..+.+|+.+=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~-~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGE-ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECSSCE-EEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEECCEE-EEECCCCEEE
Confidence 334566655533333477899999999988776543 4567877664
No 121
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=20.05 E-value=96 Score=27.72 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=30.8
Q ss_pred EEeCCCCEEEecCCCcCeEEEEEeeEEEEeeecceeeecCCCCeec
Q 042686 456 VVFSERTVIIQEGDPINVMTFVLQGKTWAYSKKLSITIQRHQDHCD 501 (596)
Q Consensus 456 ~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~~G~~FG 501 (596)
..+.||..+-..-....++++|++|++++..+++ ...+.+||.+=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~-~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRA-VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEETTE-EEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEE
Confidence 3456666554333456789999999998877654 35568888764
Done!