BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042687
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 288 bits (737), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 136/169 (80%), Positives = 153/169 (90%)
Query: 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65
D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+GKT+KAQI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGN 125
WDTAGQERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHADSNIVIM+ GN
Sbjct: 83 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 126 KSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIY 174
KSDL HLRAV ++A+ AEK GLSF+ETSAL++ NVE AFQTIL +IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 287 bits (735), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 136/194 (70%), Positives = 164/194 (84%), Gaps = 2/194 (1%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68
YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+GKT+KAQIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128
AGQERYR ITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHADSNIVIM+ GNKSD
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKKALAAQEAA 188
L HLRAV ++A+ AEK LSF+ETSAL++ NVE+AF+ IL +IY I+S+K +A + A
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181
Query: 189 SSTGLPQGTTINVA 202
+ P ++++
Sbjct: 182 DES--PGNNVVDIS 193
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 286 bits (731), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 135/168 (80%), Positives = 152/168 (90%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68
YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+GKT+KAQIWDT
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128
AGQERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHADSNIVIM+ GNKSD
Sbjct: 77 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHI 176
L HLRAV ++A+ AEK GLSF+ETSAL++ NVE AFQTIL +IY I
Sbjct: 137 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 285 bits (728), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 135/169 (79%), Positives = 152/169 (89%)
Query: 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65
D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+GKT+KAQI
Sbjct: 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 82
Query: 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGN 125
WDTAG ERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHADSNIVIM+ GN
Sbjct: 83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 126 KSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIY 174
KSDL HLRAV ++A+ AEK GLSF+ETSAL++ NVE AFQTIL +IY
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 284 bits (726), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 135/169 (79%), Positives = 152/169 (89%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67
EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+GKT+KAQIWD
Sbjct: 4 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAG ERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHADSNIVIM+ GNKS
Sbjct: 64 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 123
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHI 176
DL HLRAV ++A+ AEK GLSF+ETSAL++ NVE AFQTIL +IY I
Sbjct: 124 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 281 bits (720), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 134/169 (79%), Positives = 151/169 (89%)
Query: 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65
D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+GKT+KAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGN 125
WDTAG ERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHADSNIVI + GN
Sbjct: 65 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 126 KSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIY 174
KSDL HLRAV ++A+ AEK GLSF+ETSAL++ NVE AFQTIL +IY
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 280 bits (716), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 133/167 (79%), Positives = 150/167 (89%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67
EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+GKT+KAQIWD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAG ERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHADSNIVI + GNKS
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIY 174
DL HLRAV ++A+ AEK GLSF+ETSAL++ NVE AFQTIL +IY
Sbjct: 121 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 261 bits (666), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 125/173 (72%), Positives = 150/173 (86%), Gaps = 1/173 (0%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG-KTVKAQIWD 67
YDYLFKIVLIGDSGVGKSN+LSRFTR+EF LESKSTIGVEFAT+++Q++ K +KAQIWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAGQERYRAITSAYYRGAVGALLVYDITK+ +F+N+ +WL+ELRD+ADSNIVI++ GNKS
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKK 180
DL HLR + DA A+KE L+F+ETSALEA NVE AF +L +IY++ KK
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKK 176
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 256 bits (654), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 124/216 (57%), Positives = 160/216 (74%), Gaps = 8/216 (3%)
Query: 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66
++YD LFKIVLIGDSGVGKSN+LSRFT+NEF ++SKSTIGVEFATRTL++EGK +KAQIW
Sbjct: 8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIW 67
Query: 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNK 126
DTAGQERYRAITSAYYRGAVGAL+VYDI+K +++N WL ELR++AD N+ + + GNK
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNK 127
Query: 127 SDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKKAL---- 182
SDL HLRAV E+++ A++ L F ETSAL + NV+KAF+ ++ IY +SK +
Sbjct: 128 SDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGD 187
Query: 183 -AAQEAASSTGLPQGTTINV---ANLSGNVKGKACC 214
+A A+ P G TI++ N + G CC
Sbjct: 188 SSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 237 bits (605), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 111/173 (64%), Positives = 143/173 (82%)
Query: 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66
++YDYLFKIVLIGDSGVGKSN+LSRFT +EF +ESKSTIGVEFATRT++VE K +KAQIW
Sbjct: 5 YDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIW 64
Query: 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNK 126
DTAG ERYRAITSAYYRGAVGAL+VYDI+K +++N WL ELR++AD N+ + + GNK
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNK 124
Query: 127 SDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISK 179
SDL HLRAV ++A+ A + + F ETSAL + NV+KAF+ +++ I+ ++SK
Sbjct: 125 SDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 236 bits (603), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 110/173 (63%), Positives = 144/173 (83%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67
+Y+++FK+VLIG+SGVGK+N+LSRFTRNEF +S++TIGVEF+TRT+ + VKAQIWD
Sbjct: 6 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 65
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAG ERYRAITSAYYRGAVGALLV+D+TK QT+ V RWL+EL DHA++ IV+M+ GNKS
Sbjct: 66 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 125
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKK 180
DL+ R V E+A++ AE GL FLETSAL++ NVE AF+T+L +I+ +SK+
Sbjct: 126 DLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 236 bits (603), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 110/173 (63%), Positives = 144/173 (83%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67
+Y+++FK+VLIG+SGVGK+N+LSRFTRNEF +S++TIGVEF+TRT+ + VKAQIWD
Sbjct: 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 80
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAG ERYRAITSAYYRGAVGALLV+D+TK QT+ V RWL+EL DHA++ IV+M+ GNKS
Sbjct: 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 140
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKK 180
DL+ R V E+A++ AE GL FLETSAL++ NVE AF+T+L +I+ +SK+
Sbjct: 141 DLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 118/166 (71%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68
Y YLFK ++IGD+GVGKS +L +FT F TIGVEF R + ++GK +K QIWDT
Sbjct: 7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128
AGQE +R+IT +YYRGA GALLVYDIT+R TF+++T WL + R H++SN+VIM+ GNKSD
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIY 174
L R V E+ + A + GL F+ETSA A NVE+AF +IY
Sbjct: 127 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 127/178 (71%), Gaps = 2/178 (1%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68
YDYLFK++LIGDSGVGK+ +L RF+ + F STIG++F RT++++GK +K QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128
AGQER+R IT+AYYRGA+G +LVYDIT ++FDN+ W+R + +HA +++ M+ GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISK--KALAA 184
+N R V+ E + LA G+ F+ETSA +NVE AF T+ DI + K KA AA
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATAA 182
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 119/169 (70%)
Query: 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70
YLFK ++IGD+GVGKS +L +FT F TIGVEF R + ++GK +K QIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130
QE +R+IT +YYRGA GALLVYDIT+R+TF+++T WL + R H+ SN+VIM+ GNKSDL
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 131 HLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISK 179
R V E+ + A + GL F+ETSA A NVE+AF +IY I +
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 123/171 (71%)
Query: 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69
DYLFK++LIGDSGVGK+ +L RF+ + F STIG++F RT++++GK +K QIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129
GQER+R IT+AYYRGA+G +LVYDIT ++FDN+ W+R + +HA +++ M+ GNK D+
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKK 180
N R V+ E + LA G+ F+ETSA +NVE AF T+ DI + KK
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 121/165 (73%)
Query: 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64
++ EYDYLFK++LIGDSGVGKS +L RF + + STIGV+F RT+ +E KTVK Q
Sbjct: 2 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQ 61
Query: 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAG 124
IWDTAGQER+R ITS+YYRGA G ++VYD+T R +FDNV +W++E+ +A N+ ++ G
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVG 121
Query: 125 NKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
NK DL R V +++ + LA+ G+ F+ETSA A NVE+AF T+
Sbjct: 122 NKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTM 166
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 183 bits (464), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 126/180 (70%)
Query: 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64
++ EYDYLFK++LIGDSGVGKS +L RF + + STIGV+F RT++++GKT+K Q
Sbjct: 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68
Query: 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAG 124
IWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A N+ ++ G
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Query: 125 NKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKKALAA 184
NK DL + V A+ A+ G+ FLETSA A NVE++F T+ +I + A A
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 188
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 117/169 (69%)
Query: 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66
+ Y Y+FK ++IGD GVGKS +L +FT +F + TIGVEF TR ++V G+ +K QIW
Sbjct: 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 69
Query: 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNK 126
DTAGQER+RA+T +YYRGA GAL+VYDIT+R T+++++ WL + R+ + N VI++ GNK
Sbjct: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNK 129
Query: 127 SDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYH 175
+DL R V E+A+ AE+ GL FLE SA NVE AF IY
Sbjct: 130 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 140/211 (66%), Gaps = 6/211 (2%)
Query: 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64
++ EYDYLFK++LIG+SGVGKS +L RF+ + + + STIGV+F +T++++GKTVK Q
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAG 124
IWDTAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V WL+E+ +A S ++ ++ G
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Query: 125 NKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKKALAA 184
NK DL R V + A+ A+ + FLETSAL++ NVE AF T+ I K++++
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI-----KESMSQ 175
Query: 185 QEAASSTGLPQGT-TINVANLSGNVKGKACC 214
Q +T + +N+ S G CC
Sbjct: 176 QNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 140/211 (66%), Gaps = 6/211 (2%)
Query: 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64
++ EYDYLFK++LIG+SGVGKS +L RF+ + + + STIGV+F +T++++GKTVK Q
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAG 124
IWDTAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V WL+E+ +A S ++ ++ G
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Query: 125 NKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKKALAA 184
NK DL R V + A+ A+ + FLETSAL++ NVE AF T+ I K++++
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI-----KESMSQ 175
Query: 185 QEAASSTGLPQGT-TINVANLSGNVKGKACC 214
Q +T + +N+ S G CC
Sbjct: 176 QNLNETTQKKEDKGNVNLKGQSLTNTGGGCC 206
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 121/166 (72%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67
EYDYLFK++LIGDSGVGKS +L RF + + STIGV+F RT++++GKT+K QIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAGQER+R ITS+YYRGA G ++VYD+T ++++ NV +WL+E+ +A N+ ++ GNKS
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
DL + V A+ A+ G+ FLETSA A NVE+AF T+ +I
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 121/166 (72%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67
EYDYLFK++LIGDSGVGKS +L RF + + STIGV+F RT++++GKT+K QIWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAGQER+R ITS+YYRGA G ++VYD+T ++++ NV +WL+E+ +A N+ ++ GNKS
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
DL + V A+ A+ G+ FLETSA A NVE+AF T+ +I
Sbjct: 125 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 121/166 (72%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67
EYDYLFK++LIGDSGVGKS +L RF + + STIGV+F RT++++GKT+K QIWD
Sbjct: 21 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A N+ ++ GNK
Sbjct: 81 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 140
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
DL + V A+ A+ G+ FLETSA A NVE++F T+ +I
Sbjct: 141 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 121/166 (72%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67
EYDYLFK++LIGDSGVGKS +L RF + + STIGV+F RT++++GKT+K QIWD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A N+ ++ GNK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
DL + V A+ A+ G+ FLETSA A NVE++F T+ +I
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 123/169 (72%)
Query: 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64
++ EYDYLFK++LIGDSGVGK+ +L RF + + STIGV+F RT++++GKT+K Q
Sbjct: 9 MNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 68
Query: 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAG 124
IWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A N+ ++ G
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Query: 125 NKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
NK DL + V A+ A+ G+ FLETSA A NVE++F T+ +I
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 180 bits (456), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 86/168 (51%), Positives = 121/168 (72%)
Query: 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65
+ EYDYLFK++LIGDSGVGKS +L RF + + STIGV+F RT++++GKT+K QI
Sbjct: 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Query: 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGN 125
WDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A N+ ++ GN
Sbjct: 87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 126 KSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
K DL + V A+ A+ G+ FLETSA A NVE++F T +I
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 117/171 (68%)
Query: 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66
+ Y Y+FK ++IGD GVGKS +L +FT +F + TIGVEF TR ++V G+ +K QIW
Sbjct: 25 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 84
Query: 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNK 126
DTAGQ R+RA+T +YYRGA GAL+VYDIT+R T+++++ WL + R+ + N VI++ GNK
Sbjct: 85 DTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNK 144
Query: 127 SDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHII 177
+DL R V E+A+ AE+ GL FLE SA NVE AF IY I
Sbjct: 145 ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 195
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 1/162 (0%)
Query: 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQI 65
D +YD+LFK+VL+GD+ VGK+ ++ RF F STIGV+F +TL+++GK VK QI
Sbjct: 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82
Query: 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGN 125
WDTAGQER+R IT +YYR A GA+L YDITKR +F +V W+ ++R +A SNIV ++ GN
Sbjct: 83 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142
Query: 126 KSDLNHLRAVAAEDAQILAEK-EGLSFLETSALEALNVEKAF 166
KSDL+ LR V+ +AQ LAE + L +ETSA ++ NVE+AF
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 122/169 (72%)
Query: 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64
++ EYDYLFK++LIGDSGVGKS +L RF + + STIGV+F RT++++GKT+K Q
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAG 124
IWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A N+ ++ G
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
Query: 125 NKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
K DL + V A+ A+ G+ FLETSA A NVE++F T+ +I
Sbjct: 121 IKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 121/162 (74%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67
EYDYLFK++LIG+SGVGKS +L RF+ + + + STIGV+F +T++++GKTVK QIWD
Sbjct: 17 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V WL+E+ +A S ++ ++ GNK
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
DL R V + A+ A+ + FLETSAL++ NVE AF T+
Sbjct: 137 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 178
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 120/166 (72%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67
EYD LFK++LIGDSGVGKS +L RF + + STIGV+F RT++++GKT+K QIWD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A N+ ++ GNK
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
DL + V A+ A+ G+ FLETSA A NVE++F T+ +I
Sbjct: 122 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 113/157 (71%)
Query: 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69
D+LFK ++IG +G GKS +L +F N+F +S TIGVEF +R + V GKTVK QIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129
GQER+R++T +YYRGA GALLVYDIT R+T++++ WL + R A NIV+++ GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
+ R V +A A++ L FLETSAL NVE+AF
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 113/158 (71%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68
YD+LFK ++IG++G GKS +L +F +F +S TIGVEF ++ + V GK VK QIWDT
Sbjct: 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 66
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128
AGQER+R++T +YYRGA GALLVYDIT R+T++ +T WL + R A NIVI++ GNK D
Sbjct: 67 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 126
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
L+ R V +A A++ L FLETSAL NVE+AF
Sbjct: 127 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAF 164
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 113/158 (71%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68
YD+LFK ++IG++G GKS +L +F +F +S TIGVEF ++ + V GK VK QIWDT
Sbjct: 8 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 67
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128
AGQER+R++T +YYRGA GALLVYDIT R+T++ +T WL + R A NIVI++ GNK D
Sbjct: 68 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
L+ R V +A A++ L FLETSAL +VE+AF
Sbjct: 128 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 165
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 112/158 (70%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68
YD+LFK ++IG++G GKS +L +F +F +S TIGVEF ++ + V GK VK QIWDT
Sbjct: 5 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 64
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128
AG ER+R++T +YYRGA GALLVYDIT R+T++ +T WL + R A NIVI++ GNK D
Sbjct: 65 AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
L+ R V +A A++ L FLETSAL +VE+AF
Sbjct: 125 LDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 162
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 115/160 (71%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K++LIGDSGVGKS +L RF + + STIGV+F RT++++GKT+K QIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR 133
+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A N+ ++ GNK DL +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 134 AVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
V A+ A+ G+ FLETSA A NVE++F T+ +I
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 166 bits (420), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 111/162 (68%), Gaps = 1/162 (0%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWD 67
+YD+LFK+++IGDSGVGKS++L RF N F +TIGV+F RT+++ G+ VK QIWD
Sbjct: 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAGQER+R ITS YYRG G ++VYD+T ++F NV RWL E+ + D ++ ++ GNK+
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKN 123
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
D + V EDA A + G+ ETSA E +NVE+ F I
Sbjct: 124 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 113/161 (70%), Gaps = 1/161 (0%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68
YD + KI+LIGDSGVGKS +L RF ++F +TIG++F +T+ + GK VK Q+WDT
Sbjct: 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128
AGQER+R IT+AYYRGA+G +LVYD+T +TF N+ +W + + +HA+ +++ GNKSD
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
+ R V A+ + LA++ G+ F+E+SA NV + F T+
Sbjct: 137 M-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGVEFATRTLQVEGKTVKAQIWD 67
YD FK++L+GDSGVGK+ +L RF F + ST+G++F + L V+G VK Q+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127
TAGQER+R++T AYYR A LL+YD+T + +FDN+ WL E+ ++A ++ +M+ GNK
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
D H R V ED + LA++ GL F+ETSA LNV+ AF I
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI 168
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 112/160 (70%), Gaps = 1/160 (0%)
Query: 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69
D + KI+LIGDSGVGKS +L RF ++F +TIG++F +T+ + GK VK QIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129
GQER+R IT+AYYRGA+G +LVYDIT +TF N+ +W + + +HA+ +++ GNKSD+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V A+ + LA++ G+ F+E+SA NV + F T+
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 112/160 (70%)
Query: 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66
+YD+LFKIVLIG++GVGK+ ++ RFT+ F +TIGV+F +T+++ G+ VK QIW
Sbjct: 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNK 126
DTAGQER+R+IT +YYR A +L YDIT ++F + WLRE+ +A + ++ ++ GNK
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 127 SDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
DL R V+ + A+ +E + + +LETSA E+ NVEK F
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 109/156 (69%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+VL+GD G GKS+++ RF +++F +STIG F ++TL V TVK +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR 133
Y ++ YYRGA A++V+D+T + +F+ +W++EL+ + N+V+ +AGNKSDL R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 134 AVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
V AEDAQ A++ GL F+ETSA A NV++ F I
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 110/160 (68%), Gaps = 1/160 (0%)
Query: 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69
D + KI+LIGDSGVGKS +L RF ++F +TIG++F +T+ + GK VK QIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129
GQER+R IT+AYYRGA G +LVYDIT +TF N+ +W + + +HA+ +++ GNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V A+ + LA++ G+ F+E+SA NV + F T+
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
+ KI+LIGDSGVGKS +L RF ++F +TIG++F +T+ + GK VK Q+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131
ER+R IT+AYYRGA+G +LVYD+T +TF N+ +W + + +HA+ +++ GNKSD+
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 132 LRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V A+ + LA++ G+ F+E+SA NV + F T+
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 110/160 (68%), Gaps = 1/160 (0%)
Query: 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69
D + KI+LIGDSGVGKS +L RF ++F +TIG++F +T+ + GK VK Q+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129
GQER+R IT+AYYRGA G +LVYD+T +TF N+ +W + + +HA+ +++ GNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V A+ + LA++ G+ F+E+SA NV + F T+
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 110/162 (67%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68
+DY+FK+++IG+S VGK++ L R+ + F ST+G++F +T+ K VK QIWDT
Sbjct: 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128
AGQERYR IT+AYYRGA+G +L+YDIT ++F+ V W +++ ++ N +++ GNK D
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
+ R V E Q+LAE+ G F E SA E ++V +AF+ ++
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 106/157 (67%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+T+ ++ TVK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT TF W++EL+ A NIVI +AGNK+DL
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F+ETSA A+NV + F I
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 113/165 (68%), Gaps = 1/165 (0%)
Query: 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69
D+ ++++IG GVGK++++ RFT + FC KST+GV+F +T+++ GK ++ QIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129
GQER+ +ITSAYYR A G +LVYDITK++TFD++ +W++ + +A + +++ GNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 130 NHLRAVAAEDAQILAEK-EGLSFLETSALEALNVEKAFQTILLDI 173
R + + + A++ G+ F E SA + NV++ F ++ DI
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 108/161 (67%)
Query: 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69
DY+FK++LIG+S VGK++ L R+ + F ST+G++F +T+ K +K QIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129
GQERYR IT+AYYRGA+G LL+YDI +++F V W +++ ++ N +++ GNK DL
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
R V AED + LA+ G F E SA E +NV++ F+ ++
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 108/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+T+ ++ TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT ++F W++EL+ A NIVI ++GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F+ETSA ++NV + F I
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 108/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+T+ ++ TVK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT ++F W++EL+ A NIVI ++GNK+DL +
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F+ETSA ++NV + F I
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 164
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 108/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+T+ ++ TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT ++F W++EL+ A NIVI ++GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F+ETSA ++NV + F I
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 105/157 (66%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+T+ ++ TVK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT TF W++EL+ A NIVI +AGNK+DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F+ETSA A+NV + F I
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 107/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+++ ++ TVK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT ++TF W++EL+ A +IVI +AGNK+DL +
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V E+AQ A+ L F+ETSA A+NV F I
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAI 165
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 105/157 (66%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K+ L+GD+GVGKS+I+ RF ++ F TIG F T+T+ + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+ ++ YYRG+ A++VYDITK+ +F + +W++EL++H NIV+ +AGNK DL+ +
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V +DA+ AE G +ETSA A+N+E+ FQ I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 105/157 (66%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STI F T+T+ ++ TVK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT TF W++EL+ A NIVI +AGNK+DL
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F+ETSA A+NV + F I
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 108/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+T+ ++ TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT ++F W++EL+ A NIVI ++GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F+ETSA ++NV + F I
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 108/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+T+ ++ TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT ++F W++EL+ A NIVI ++GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F+ETSA ++NV + F I
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 108/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+T+ ++ TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT ++F W++EL+ A NIVI ++GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F+ETSA ++NV + F I
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 110/162 (67%)
Query: 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT 68
+DY+FKI++IG+S VGK++ L R+ + F ST+G++F +T+ K +K QIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128
AGQERYR IT+AYYRGA+G +L+YDIT ++F+ V W +++ ++ N +++ GNK D
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
+ R V++E + LA+ G F E SA + +NV++ F+ ++
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 101/157 (64%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K+ L+GD+GVGKS+I+ RF + F TIG F T+T+Q + + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+RA+ YYRG+ A++VYDITK +TF + W+RELR H +IV+ +AGNK DL +
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V DA+ A+ F+ETSA A+N+ + F I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 108/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+T+ ++ TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT ++F W++EL+ A NIVI ++GNK+DL +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F+ETSA ++NV + F I
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 106/157 (67%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+T+ ++ TVK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT ++F W++EL+ A NIVI ++GNK+DL +
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F ETSA + NV + F I
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAI 164
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 107/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+G+S VGKS+++ RF + +F +STIG F T+T+ ++ TVK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
RY ++ YYRGA A++VYDIT ++F W++EL+ A NIVI ++GNK+DL +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
RAV ++AQ A+ L F+ETSA ++NV + F I
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 150 bits (378), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 118/195 (60%), Gaps = 6/195 (3%)
Query: 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66
H +DY FKI++IG+S VGK++ L R+ + F ST+G++F +T+ K +K QIW
Sbjct: 3 HXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 62
Query: 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNK 126
DTAG ERYR IT+AYYRGA G +L YDIT ++F+ V W +++ ++ N +++ GNK
Sbjct: 63 DTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 122
Query: 127 SDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKKALAAQE 186
D R V++E + LA+ G F E SA + +NV++ F+ ++ +I +K + +
Sbjct: 123 CDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV----DVICEKXSESLD 178
Query: 187 AASS--TGLPQGTTI 199
A TG QG +
Sbjct: 179 TADPAVTGAKQGPQL 193
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 100/157 (63%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K+ L+GD+GVGKS+I+ RF + F TIG F T+T+Q + + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+RA+ YYRG+ A++VYDITK +TF + W+RELR H +IV+ +AGNK DL +
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V DA+ A+ F+ETSA A+N+ + F I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 134/218 (61%), Gaps = 21/218 (9%)
Query: 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATR-----TLQVEGK 59
D +YDYL K++ +GDSGVGK+ L R+T N+F + +T+G++F + T +G
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 60 TVKA-----QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHA 114
+ KA Q+WDTAG ER+R++T+A++R A+G LL++D+T +Q+F NV W+ +L+ +A
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 115 -DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
N I++ GNK+DL R V A+ LAEK G+ + ETSA NVEK+ +T+L
Sbjct: 124 YCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL--- 180
Query: 174 YHIISKKALAAQEAASSTGLPQGTTINVANLSGNVKGK 211
+I K+ ++ T +P T+N N SG + G+
Sbjct: 181 -DLIMKR---MEKCVEKTQVPD--TVNGGN-SGKLDGE 211
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 117/179 (65%), Gaps = 12/179 (6%)
Query: 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-------- 57
D +YDYL K + +GDSGVGK+++L ++T +F + +T+G++F + +
Sbjct: 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64
Query: 58 --GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD 115
G+ + Q+WDTAG ER+R++T+A++R A+G LL++D+T Q+F NV W+ +L+ HA
Sbjct: 65 GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124
Query: 116 S-NIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
S N I++ GNKSDL RAV E+A+ LAEK G+ + ETSA N+ A + +LLD+
Sbjct: 125 SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIE-MLLDL 182
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 114/174 (65%), Gaps = 11/174 (6%)
Query: 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE--------GK 59
+YDYL K++ +GDSGVGK+ L R+T N+F + +T+G++F + + GK
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 60 TVKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD-S 116
K Q+WDTAGQER+R++T+A++R A+G LL++D+T +Q+F NV W+ +L+ +A
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 117 NIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
N I++ GNK+DL R V A+ LA+K G+ + ETSA NVEKA +T+L
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 116/176 (65%), Gaps = 11/176 (6%)
Query: 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATR-----TLQVEGKT 60
D +YDYL K++ +GDSGVGK+ L R+T N+F + +T+G++F + T +G +
Sbjct: 5 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGAS 64
Query: 61 VKA-----QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD 115
KA Q+WDTAG ER+R++T+A++R A+G LL++D+T +Q+F NV W+ +L+ +A
Sbjct: 65 GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 116 -SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
N I++ GNK+DL R V A+ LAEK G+ + ETSA NVEK+ +T+L
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 113/177 (63%), Gaps = 11/177 (6%)
Query: 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATR-----TLQVEGK 59
D +YDYL K++ +GDSGVGK+ L R+T N+F + +T+G++F + T +G
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 60 TVKA-----QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHA 114
+ KA Q+WDTAG ER+R++T+A++R A G LL +D+T +Q+F NV W +L+ +A
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123
Query: 115 D-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
N I++ GNK+DL R V A+ LAEK G+ + ETSA NVEK+ +T+L
Sbjct: 124 YCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+VL+G++ VGKS+I+ RF N+F + TIG F T+ + + TVK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL---N 130
+ ++ YYR A AL+VYD+TK Q+F W++EL + A +I+I + GNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 131 HLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R VA E+ + LAE++GL F ETSA NV F I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 113/177 (63%), Gaps = 11/177 (6%)
Query: 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATR-----TLQVEGK 59
D +YDYL K++ +GDSGVGK+ L R+T N+F + +T+G++F + T +G
Sbjct: 4 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 60 TVKA-----QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHA 114
+ KA Q+WDTAG ER+R++T+A++R A G LL +D+T +Q+F NV W +L+ +A
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANA 123
Query: 115 D-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
N I++ GNK+DL R V A+ LAEK G+ + ETSA NVEK+ +T+L
Sbjct: 124 YCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 89/115 (77%)
Query: 15 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74
++LIGDSGVGKS +L RF + + STIGV+F RT++++GKT+K QIWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75 RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129
R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+ +A N+ ++ GNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 108/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+V +G+ VGK+++++RF + F ++TIG++F ++T+ +E +T++ Q+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+R++ +Y R + A++VYDIT +F T+W+ ++R S+++IM+ GNK+DL
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V+ E+ + A++ + F+ETSA NV++ F+ +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 109/157 (69%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+V +G+ VGK+++++RF + F ++TIG++F ++T+ +E +TV+ Q+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+R++ +Y R + A++VYDIT +F ++W+ ++R S+++IM+ GNK+DL+
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V+ E+ + A++ + F+ETSA NV++ F+ +
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 108/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+V +G+ VGK+++++RF + F ++TIG++F ++T+ +E +TV+ Q+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+R++ +Y R + A++VYDIT +F T+W+ ++R S+++IM+ GNK+DL
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V+ E+ + A++ + F+ETSA NV++ F+ +
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 105/181 (58%), Gaps = 2/181 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
KI++IG+SGVGKS++L RFT + F E +TIGV+F +T+ V+G K IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSN-IVIMMAGNKSDLNH 131
R+R +T +YYRGA G +LVYD+T+R TF + WL EL + N IV + GNK D +
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 132 LRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKKALAAQEAASST 191
R V + A K F+E SA V+ AF+ ++ I Q + S+
Sbjct: 136 -REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194
Query: 192 G 192
G
Sbjct: 195 G 195
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 104/155 (67%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+K+V +G+ VGK++I++RF + F +STIG++F ++TL ++ V+ Q+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+R++ +Y R + A++VYDIT RQ+F+N T+W++++ + +++I + GNK+DL L
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167
R V E+ A++ F ETSA N++ F+
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFK 156
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 107/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+V +G+ VGK+++++RF + F ++TIG++F ++T+ +E +TV+ Q+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+R++ +Y R + A++VYDIT +F ++W+ ++R S+++IM+ GNK+DL
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R + E+ + A++ + F+ETSA NV++ F+ +
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 107/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+V +G+ VGK+++++RF + F ++TIG++F ++T+ +E +T++ Q+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+R++ +Y R + A++VYDIT +F T+W+ ++R S+++IM+ GNK+DL
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V+ E+ + A++ + F+ETSA NV++ F+ +
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 107/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+V +G+ VGK+++++RF + F ++TIG++F ++T+ +E +TV+ Q+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+R++ +Y R + A++VYDIT +F T+W+ ++R S+++IM+ GNK+DL
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V+ E+ + A++ + F+ETSA NV++ F+ +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 107/157 (68%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+V +G+ VGK+++++RF + F ++TIG++F ++T+ +E +TV+ Q+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+R++ +Y R + A++VYDIT +F T+W+ ++R S+++IM+ GNK+DL
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169
R V+ E+ + A++ + F+ETSA NV++ F+ +
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 104/163 (63%), Gaps = 6/163 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++++GDSGVGK+++++++ +F + K+TIG +F T+ + V+ + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS----NIVIMMAGNKS 127
ER++++ A+YRGA +LV+D+T TF + W E A N ++ GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLNHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTI 169
DL + R VA + AQ K + + ETSA EA+NVE+AFQTI
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 104/163 (63%), Gaps = 6/163 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++++GDSGVGK+++++++ +F + K+TIG +F T+ + V+ + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS----NIVIMMAGNKS 127
ER++++ A+YRGA +LV+D+T TF + W E A N ++ GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLNHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTI 169
DL + R VA + AQ K + + ETSA EA+NVE+AFQTI
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 103/161 (63%), Gaps = 6/161 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
LFKI+L+GD GVGKS++++R+ N+F + TIGVEF + L+V+G V QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD----SNIVIMMAGNKS 127
ER+R++ + +YRG+ LL + + Q+F N++ W +E +AD + ++ GNK+
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 128 DLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
D+ R V+ E+AQ + G + ETSA ++ NV AF+
Sbjct: 131 DIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFE 170
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
LFK++L+GD GVGKS++++R+ N+F + TIGVEF + L+V+G V QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD----SNIVIMMAGNKS 127
ER+R++ + +YRG+ LL + + Q+F N++ W +E +AD + ++ GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 128 DLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
D++ R V+ E+AQ G + ETSA +A NV AF+
Sbjct: 127 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 166
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 103/163 (63%), Gaps = 6/163 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++++GDSGVGK+++++++ +F + K+TIG +F T+ + V+ + V QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS----NIVIMMAGNKS 127
ER++++ A+YRGA +LV+D+T TF + W E A N ++ GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLNHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTI 169
D + R VA + AQ K + + ETSA EA+NVE+AFQTI
Sbjct: 128 DFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
LFK++L+GD GVGKS++++R+ N+F + TIGVEF + L+V+G V QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD----SNIVIMMAGNKS 127
ER+R++ + +YRG+ LL + + Q+F N++ W +E +AD + ++ GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 128 DLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
D++ R V+ E+AQ G + ETSA +A NV AF+
Sbjct: 129 DISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 168
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++L+GD GVGKS++++R+ N+F ++ TIGVEF R L+V+G+ V QIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD----SNIVIMMAGNKS 127
ER++++ + +YRGA LL + + RQ+F+N+ W +E +AD + ++ GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 128 DLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
D R V E+AQ + G +LETSA + NV AF+
Sbjct: 127 DKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFE 166
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 103/163 (63%), Gaps = 6/163 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++++GDSGVGK+++++++ +F + K+TIG +F T+ + V+ + V QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS----NIVIMMAGNKS 127
ER++++ A+YRGA +LV+D+T TF + W E A N ++ GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 128 DLNHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTI 169
DL + R VA + AQ K + + ETSA EA+NVE+AFQTI
Sbjct: 128 DLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 95/156 (60%)
Query: 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70
Y FK+VL+G+ VGK++++ R+ N+F + +T+G F T+ L + GK V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130
QER+ A+ YYR + GA+LVYDIT +F V W++ELR + I + + GNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 131 HLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
R V+ ++A+ AE G TSA + +E+ F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 126 bits (316), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 6/159 (3%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+KIVL GD+ VGKS+ L R +NEF +T+GV+F +TL V+G+ Q+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
R+R+I +Y+R A G LL+YD+T ++F N+ W+ + D A + IM+ GNK+D+
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 133 ------RAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165
+ V + LA G F ETSA + N+ +A
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEA 187
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 94/156 (60%)
Query: 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70
Y FK+VL+G+ VGK++++ R+ N+F + +T+ F T+ L + GK V IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130
QER+ A+ YYR + GA+LVYDIT +F V W++ELR + I + + GNK DL
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 131 HLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
R V+ ++A+ AE G TSA + +E+ F
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 94/156 (60%)
Query: 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70
Y FK+VL+G+ VGK++++ R+ N+F + +T+ F T+ L + GK V IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130
QER+ A+ YYR + GA+LVYDIT +F V W++ELR + I + + GNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 131 HLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
R V+ ++A+ AE G TSA + +E+ F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 104/165 (63%), Gaps = 7/165 (4%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG-KTVKAQIWDTAG 70
+ K++++GDSGVGK++++ R+ +++ + K+TIG +F T+ + V+G K Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSN----IVIMMAGNK 126
QER++++ A+YRGA +LVYD+T +F+N+ W E HA+ N ++ GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 127 SDLNHLRAVAAE-DAQILAEKEG-LSFLETSALEALNVEKAFQTI 169
D + + +E AQ LA+ G + TSA A+NV+ AF+ I
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 5/163 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
+FKI++IGDS VGK+ + RF F +++TIGV+F R + ++G+ +K Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 72 ERYR-AITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSN-IVIMMAGNKSDL 129
ER+R ++ YYR + VYD+T +F ++ W+ E + H +N I ++ GNK DL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALN---VEKAFQTI 169
V + AQ A+ + ETSA + VE F T+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 5/163 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
+FKI++IGDS VGK+ + RF F +++TIGV+F R + ++G+ +K Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 72 ERYR-AITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSN-IVIMMAGNKSDL 129
ER+R ++ YYR + VYD T +F ++ W+ E + H +N I ++ GNK DL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALN---VEKAFQTI 169
V + AQ A+ ETSA + VE F T+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++G+ VGKS+++ R+ + F + K TIGV+F R +QV + V+ +WDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR 133
+ AIT AYYRGA +LV+ T R++F+ ++ W RE +I + NK DL
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLDDS 125
Query: 134 AVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167
+ E+A+ LA++ L F TS E LNV + F+
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
+Y + YY A A++++D+T R T+ NV W R+L NI I++ GNK D+
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI----------------LLDIYHI 176
R V A+ + + K+ L + + SA N EK F + L +
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 187
Query: 177 ISKKALAAQ-----EAASSTGLP 194
+ ALAAQ E A +T LP
Sbjct: 188 VMDPALAAQYEHDLEVAQTTALP 210
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L NI I++ GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI----------------LLDIYHI 176
R V A+ + + K+ L + + SA N EK F + L +
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEV 187
Query: 177 ISKKALAAQ-----EAASSTGLP 194
+ ALAAQ E A +T LP
Sbjct: 188 VMDPALAAQYEHDLEVAQTTALP 210
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L NI I++ GNK D+
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI----------------LLDIYHI 176
R V A+ + + K+ L + + SA N EK F + L +
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 187
Query: 177 ISKKALAAQ-----EAASSTGLP 194
+ ALAAQ E A +T LP
Sbjct: 188 VMDPALAAQYEHDLEVAQTTALP 210
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L NI I++ GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI----------------LLDIYHI 176
R V A+ + + K+ L + + SA N EK F + L +
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 187
Query: 177 ISKKALAAQ-----EAASSTGLP 194
+ ALAAQ E A +T LP
Sbjct: 188 VMDPALAAQYEHDLEVAQTTALP 210
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 24/215 (11%)
Query: 1 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60
MA E FK+VL+GD G GK+ + R EF + +T+GVE
Sbjct: 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63
Query: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVI 120
+K +WDTAGQE++ + YY A A++++D+T R T+ NV W R+L NI I
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPI 122
Query: 121 MMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI----------- 169
++ GNK D+ R V A+ + + K+ L + + SA N EK F +
Sbjct: 123 VLCGNKVDIKD-RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180
Query: 170 -----LLDIYHIISKKALAAQ-----EAASSTGLP 194
L ++ ALAAQ E A +T LP
Sbjct: 181 FVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALP 215
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L + NI I++ GNK D+
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 121
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI----------------LLDIYHI 176
R V A+ + K+ L + + SA N EK F + L +
Sbjct: 122 RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 180
Query: 177 ISKKALAAQ-----EAASSTGLP 194
+ ALAAQ E A +T LP
Sbjct: 181 VMDPALAAQYEHDLEVAQTTALP 203
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 97/203 (47%), Gaps = 24/203 (11%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L NI I++ GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI----------------LLDIYHI 176
R V A+ + + K+ L + + SA N EK F + L +
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 187
Query: 177 ISKKALAAQ-----EAASSTGLP 194
+ ALAAQ E A +T LP
Sbjct: 188 VMDPALAAQYEHDLEVAQTTALP 210
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 97/203 (47%), Gaps = 24/203 (11%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++ +D+T R T+ NV W R+L NI I++ GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI----------------LLDIYHI 176
R V A+ + + K+ L + + SA N EK F + L +
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPEV 187
Query: 177 ISKKALAAQ-----EAASSTGLP 194
+ ALAAQ E A +T LP
Sbjct: 188 VXDPALAAQYEHDLEVAQTTALP 210
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 40/199 (20%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK------------- 59
+K VL+G+S VGKS+I+ R T++ F + +TIG F T + +
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 60 ------------------------TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 95
+K IWDTAGQERY +I YYRGA A++V+DI+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 96 KRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETS 155
T D W+ +L+ SN +I++ NK D N + V + Q A+ L F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTS 184
Query: 156 ALEALNVEKAFQTILLDIY 174
A N++ F + +IY
Sbjct: 185 AKTGTNIKNIFYMLAEEIY 203
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L + NI I++ GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 128
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
R V A+ + K+ L + + SA N EK F
Sbjct: 129 RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +T+GVE +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L + NI I++ GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 128
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
R V A+ + K+ L + + SA N EK F
Sbjct: 129 RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++++G GVGKS + +F +EF + + T + + + ++G+ V+ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRE--LRDHADSNIVIMMAGNKSDL 129
E Y AI Y+R G L V+ IT+ ++F T RE LR D N+ ++ GNKSDL
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESF-AATADFREQILRVKEDENVPFLLVGNKSDL 135
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V+ E+A+ AE+ ++++ETSA NV+K F ++ +I
Sbjct: 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++++G GVGKS + +F +EF + + T + + + ++G+ V+ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRE--LRDHADSNIVIMMAGNKSDL 129
E Y AI Y+R G L V+ IT+ ++F T RE LR D N+ ++ GNKSDL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESF-AATADFREQILRVKEDENVPFLLVGNKSDL 123
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V+ E+A+ AE+ ++++ETSA NV+K F ++ +I
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++++G GVGKS + +F +EF + + T + + + ++G+ V+ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRE--LRDHADSNIVIMMAGNKSDL 129
E Y AI Y+R G L V+ IT+ ++F T RE LR D N+ ++ GNKSDL
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESF-AATADFREQILRVKEDENVPFLLVGNKSDL 131
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V+ E+A+ AE+ ++++ETSA NV+K F ++ +I
Sbjct: 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 24/203 (11%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +T+GVE +K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L NI I++ GNK D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 128
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI----------------LLDIYHI 176
R V A+ + + K+ L + + SA N EK F + L +
Sbjct: 129 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEV 187
Query: 177 ISKKALAAQ-----EAASSTGLP 194
+ ALAAQ E A +T LP
Sbjct: 188 VMDPALAAQYEHDLEVAQTTALP 210
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++++G GVGKS + +F +EF + + T + + + ++G+ V+ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRE--LRDHADSNIVIMMAGNKSDL 129
E Y AI Y+R G L V+ IT+ ++F T RE LR D N+ ++ GNKSDL
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESF-AATADFREQILRVKEDENVPFLLVGNKSDL 121
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V+ E+A+ A++ ++++ETSA NV+K F ++ +I
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 1 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60
MA E FK+VL+GD G GK+ + R E + +T+GVE
Sbjct: 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGP 63
Query: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVI 120
+K +WDTAGQE++ + YY A A++++D+T R T+ NV W R+L NI I
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPI 122
Query: 121 MMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI----------- 169
++ GNK D+ R V A+ + + K+ L + + SA N EK F +
Sbjct: 123 VLCGNKVDIKD-RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180
Query: 170 -----LLDIYHIISKKALAAQ-----EAASSTGLP 194
L ++ ALAAQ E A +T LP
Sbjct: 181 FVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALP 215
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +T+GVE +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L + NI I++ GNK D+
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 130
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
R V A+ + K+ L + + SA N EK F
Sbjct: 131 RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +T+GVE +K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L + NI I++ GNK D+
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 124
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
R V A+ + K+ L + + SA N EK F
Sbjct: 125 RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 157
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 5/165 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++++G GVGKS + +F +EF + + T + + + ++G+ V+ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRE--LRDHADSN-IVIMMAGNKSD 128
E Y AI Y+R G LLV+ IT+ ++F T RE LR A+ + I +++ GNKSD
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESF-TATAEFREQILRVKAEEDKIPLLVVGNKSD 124
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
L R V E+A+ AE+ G+ ++ETSA NV+K F ++ +I
Sbjct: 125 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 5/165 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++++G GVGKS + +F +EF + + T + + + ++G+ V+ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRE--LRDHADSN-IVIMMAGNKSD 128
E Y AI Y+R G LLV+ IT+ ++F T RE LR A+ + I +++ GNKSD
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESF-TATAEFREQILRVKAEEDKIPLLVVGNKSD 120
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
L R V E+A+ AE+ G+ ++ETSA NV+K F ++ +I
Sbjct: 121 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 4/164 (2%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
L K++++G GVGKS + +F +EF + + T + + + ++G+ V+ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRE--LRDHADSNIVIMMAGNKSDL 129
E Y AI Y+R G L V+ IT+ ++F T RE LR D N+ ++ GNKSDL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESF-AATADFREQILRVKEDENVPFLLVGNKSDL 123
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V+ E+A+ AE+ ++++ETSA NV+K F ++ +I
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK-TVKAQIWDTAGQ 71
KIV++GD GK+++ + F + F + K TIG++F R + + G V QIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRW---LRELRDHADSNIVIMMAGNKSD 128
+ Y GA G LLVYDIT Q+F+N+ W ++++ + +++ ++ + GNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHI 176
L H+R + E ++ G S SA +V FQ + +I I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +TIGVE + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L + NI I++ GNK D+
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE- 130
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
R V A+ K+ L + + SA N EK F
Sbjct: 131 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPF 163
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +TIGVE + +K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L + NI I++ GNK D+
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE- 122
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
R V A+ K+ L + + SA N EK F
Sbjct: 123 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPF 155
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
FK+VL+GD G GK+ + R EF + +TIGVE + +K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
++ + YY A A++++D+T R T+ NV W R+L + NI I++ GNK D+
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKE- 123
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
R V A+ K+ L + + SA N EK F
Sbjct: 124 RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPF 156
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+K+V++G GVGKS + + +N F E TI + + + ++G+T I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS-NIVIMMAGNKSDLNH 131
Y A+ Y R G L V+ I ++F+++ + +++ DS ++ +++ GNKSDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 132 LRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V + AQ LA G+ F+ETSA V+ AF T++ +I
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+K+V++G GVGKS + + +N F E TI + + + ++G+T I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNH 131
Y A+ Y R G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 132 LRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V + AQ LA G+ ++ETSA VE AF T++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+K+V++G GVGKS + + +N F E TI + + + ++G+T I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNH 131
Y A+ Y R G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 132 LRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V + AQ LA G+ ++ETSA VE AF T++ +I
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+K+V++G GVGKS + + +N F E TI + + + ++G+T I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNH 131
Y A+ Y R G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 132 LRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V + AQ LA G+ ++ETSA VE AF T++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIG-VEFATRTLQVEGKTVKAQIWDTAGQ 71
+KI LIGD GVGK+ ++R F +T+G V L +G +K +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131
E+ + YY GA GA+L +D+T R T N+ RW++E + + I++ NK D+ +
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 132 LRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166
+ ++ + + + + + E SA A N F
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+K+V++G GVGKS + + +N F E TI + + + ++G+T I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNH 131
Y A+ Y R G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 132 LRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V + AQ LA G+ ++ETSA VE AF T++ +I
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+K+V++G GVGKS + + +N F E TI + + + ++G+T I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS-NIVIMMAGNKSDLNH 131
Y A+ Y R G L V+ I ++F+++ + +++ DS ++ +++ GNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 132 LRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V + AQ LA G+ F+ETSA V+ AF T++ +I
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+VL+GD G GK+++L F F ES + E LQV+GK V IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + +Y A LL +D+T +FDN+ RW E+ +H + I++ G K+DL
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
N L V Q +A G +++LE SA NV FQ
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQ 201
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 12/169 (7%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
K V +GD VGK+ +L +T N+F + T+ F+ + V+G+ V +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLN 130
E Y + YRGA +L + + + +++NV +W+ ELR A N+ I++ G K DL
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 126
Query: 131 HLRAVAAEDAQILAEKEG---------LSFLETSALEALNVEKAFQTIL 170
+ A+ ++ +G +++E S+ NV+ F T +
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 10/150 (6%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
K V +GD VGK+ +L +T N F + T+ F+ + V+G TV +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLN 130
E Y + YRGA LL + + + +++N+ +WL EL+ +A I I++ G K DL
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLR 123
Query: 131 HLRAVAAEDAQILAEKEGLSFLETSALEAL 160
+D Q L + G + + T+ E L
Sbjct: 124 -------DDKQFLKDHPGAASITTAQGEEL 146
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+K+V++G GVGKS + +F + F E TI + + ++V+ + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRE--LRDHADSNIVIMMAGNKSDLN 130
++ A+ Y + G LVY IT + TF+++ LRE LR ++ +++ GNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLE 121
Query: 131 HLRAVAAEDAQILAEKE-GLSFLETSALEALNVEKAFQTILLDI 173
R V E Q LA + +FLE+SA +NV + F ++ I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+K+V++G GVGKS + +F + F + TI + + ++V+ + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRE--LRDHADSNIVIMMAGNKSDLN 130
++ A+ Y + G LVY IT + TF+++ LRE LR ++ +++ GNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTDDVPMILVGNKCDLE 121
Query: 131 HLRAVAAEDAQILAEK-EGLSFLETSALEALNVEKAFQTILLDI 173
R V E Q LA + +FLE+SA +NV + F ++ I
Sbjct: 122 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 2/160 (1%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
KI ++G VGKS++ +F +F + TI F T+ + V G+ Q+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS-NIVIMMAGNKSDLNHL 132
Y Y G +LVY +T ++F+ + +L D I IM+ GNK DL+
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172
R ++ E+ + LAE +FLE+SA E F+ I+L+
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+K+V++G GVGKS + +F + F + TI + + ++V+ + +I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRE--LRDHADSNIVIMMAGNKSDLN 130
++ A+ Y + G LVY IT + TF+++ LRE LR ++ +++ GNK DL
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTDDVPMILVGNKCDLE 123
Query: 131 HLRAVAAEDAQILAEK-EGLSFLETSALEALNVEKAFQTILLDI 173
R V E Q LA + +FLE+SA +NV + F ++ I
Sbjct: 124 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
KI ++G VGKS++ +F +F TI F T+ + V G+ Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS-NIVIMMAGNKSDLNHL 132
Y Y G +LVY +T ++F+ + +L D I IM+ GNK DL+
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172
R ++ E+ + LAE +FLE+SA E F+ I+L+
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + +F ++ F + TI + T+ ++ + + I DTAGQE + A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 85 AVGALLVYDITKRQTFDNVTRWLRE-LRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQIL 143
G LLV+ +T R +F+ + ++ R+ LR +++ GNK+DL+H R V E+ Q L
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 144 AEKEGLSFLETSALEALNVEKAFQTIL 170
A + ++++E SA +NV++AF ++
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELV 163
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
KI ++G VGKS++ +F +F TI F T+ + V G+ Q+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS-NIVIMMAGNKSDLNHL 132
Y Y G +LVY +T ++F+ + +L D I IM+ GNK DL+
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172
R ++ E+ + LAE +FLE+SA E F+ I+L+
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
KI ++G VGKS++ +F +F TI F T+ + V G+ Q+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS-NIVIMMAGNKSDLNHL 132
Y Y G +LVY +T ++F+ + +L D I IM+ GNK DL+
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172
R ++ E+ + LAE +FLE+SA E F+ I+L+
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNKSDL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
K V +GD VGK+ +L +T N F + T+ F+ + V+G TV +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLN 130
E Y + YRGA +L + + + +++NV +W+ ELR +A + I++ G K DL
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
Query: 131 HLRAVAAEDAQILAEKEGLSFLETSALEAL 160
+D Q + G + T+ E L
Sbjct: 124 -------DDKQFFIDHPGAVPITTNQGEEL 146
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+K+V++G GVGKS + +F + F + TI + + ++V+ + +I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRE--LRDHADSNIVIMMAGNKSDLN 130
++ A+ Y + G LVY IT + TF+++ LRE LR ++ +++ GNK DL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLE 121
Query: 131 HLRAVAAEDAQILAEKE-GLSFLETSALEALNVEKAFQTILLDI 173
R V E Q LA + +FLE+SA +NV + F ++ I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNKSDL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ + +++ DS ++ +++ GNKSDL R V + AQ L
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ F+ETSA V+ AF T++ +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ + +++ DS ++ +++ GNKSDL R V + AQ L
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ F+ETSA V+ AF T++ +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K VL+GD VGK++++ +T N + E T F+ + V+G+ V+ Q+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDE 80
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNH- 131
+ + Y LL + + +F NV+ +W+ E+R H +I++ G +SDL
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILV-GTQSDLRED 139
Query: 132 -----------LRAVAAEDAQILAEK-EGLSFLETSALEALNVEKAF 166
+ V E A++LAE+ + S++E SAL N+++ F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 140
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E +I + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 139
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 10/150 (6%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
K V +GD VGK+ +L +T N F + T+ F+ + V G TV +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLN 130
E Y + YRGA +L + + + +++NV+ +W+ EL+ +A + I++ G K DL
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLR 125
Query: 131 HLRAVAAEDAQILAEKEGLSFLETSALEAL 160
+D Q + G + T E L
Sbjct: 126 -------DDKQFFIDHPGAVPITTVQGEEL 148
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GN+ DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E +I + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTIL 170
A G+ ++ETSA VE AF T++
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
K+ + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F + TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F ++ + +++ DS+ V M + GNK DL R V + A L
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHEL 151
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKK 180
A+ G+ F+ETSA VE AF T++ +I KK
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F + TI + + + ++G+T I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAG+E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+ I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 5/145 (3%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+ + G +GVGKS ++ RF F E T+ + + ++ + V +I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 88
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDH--ADSNIVIMMAGNKSDLNH 131
+ R G +LVYDIT R +F+ V L+ + D N+ +++ GNK+DL+H
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDH 146
Query: 132 LRAVAAEDAQILAEKEGLSFLETSA 156
R V+ E+ + LA + +F E SA
Sbjct: 147 SRQVSTEEGEKLATELACAFYECSA 171
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAG E Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ + +++ DS ++ +++ GNK DL R V + AQ L
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 151
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ F+ETSA V+ AF T++ +I
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + +F ++ F + TI + T+ V+G + I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 85 AVGALLVYDITKRQTFDNVTRWLRE-LRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQIL 143
G LLV+ I RQ+F+ V + + LR + +++ GNK+DL R V +A
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 144 AEKEGLSFLETSALEALNVEKAFQTIL 170
+++ E SA LNV++AF+ ++
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLV 167
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTA QE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTA QE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAG E Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++G VGK+++ +F EF T+ + ++ + + + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRD-HADSNIVIMMAGNKSDLNHL 132
Y + ++ G G +LVY +T +F + ++L + H + + +++ GNK+DL+
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V A + + LAE G +F+E+SA E + F ++ +I
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + + +N F E TI + + + ++G+T I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVAAEDAQIL 143
G L V+ I ++F+++ ++ +++ DS+ V M + GNK DL R V + AQ L
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 144 AEKEGLSFLETSALEALNVEKAFQTILLDI 173
A G+ ++ETSA VE AF T++ +I
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y +L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 130 ----------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y +L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 130 ----------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y +L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 125
Query: 130 ----------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F+++EF T+ E ++V+GK V+ +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + + +N+ +W+ E++ H N+ I++ NK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 130 NHLR---------AVAAEDAQILAEK-EGLSFLETSALEALNVEKAFQT 168
H+R V +D + +A + + +LE SA V + F+T
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y +L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 130 ----------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + +F + F E TI + T +++ + + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 85 AVGALLVYDITKRQTFDNVTRWLRE-LRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQIL 143
G L+VY +T + +F++V R+ + LR + +++ NK DL HLR V + + +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 144 AEKEGLSFLETSALE-ALNVEKAFQTIL 170
A K + ++ETSA + LNV+K F ++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 9/183 (4%)
Query: 14 KIVLIGDSGVGKSNILSRFTR--NEFCLESKSTIGVEFATRTLQVEGKTVKAQIW--DTA 69
K+ ++G++ VGKS ++S FT ++F + T GVE + + TV +++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRW---LRELRDHADSNIVIMMAGNK 126
G + Y+ S Y+ G A+LV+D++ ++F++ W L+ R + + ++ NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 127 SDLNHLR-AVAAEDAQILAEKEGLSFLETSA-LEALNVEKAFQTILLDIYHIISKKALAA 184
+DL R V + AQ A L F + SA + + F +I Y K A
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVAAF 201
Query: 185 QEA 187
Q+A
Sbjct: 202 QDA 204
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQTILLDIYHIISK 179
H R V E+ + +A + G ++E SA V + F+ + ++
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE--------MATR 178
Query: 180 KALAAQEAASSTG 192
AL A+ +G
Sbjct: 179 AALQARRGKKKSG 191
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQTILLDIYHIISK 179
H R V E+ + +A + G ++E SA V + F+ + ++
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE--------MATR 179
Query: 180 KALAAQEAASSTG 192
AL A+ +G
Sbjct: 180 AALQARRGKKKSG 192
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 128
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
H R V E+ + +A + G ++E SA V + F+
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQTILLDIYHIISK 179
H R V E+ + +A + G ++E SA V + F+ + ++
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE--------MATR 176
Query: 180 KALAAQEAASSTG 192
AL A+ +G
Sbjct: 177 AALQARRGKKKSG 189
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
H R V E+ + +A + G ++E SA V + F+
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
H R V E+ + +A + G ++E SA V + F+
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 130 ----------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 126
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQTILLDIYHIISK 179
H R V E+ + +A + G ++E SA V + F+ + ++
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE--------MATR 178
Query: 180 KALAAQEAASSTG 192
AL A+ +G
Sbjct: 179 AALQARRGKKKSG 191
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + +F + F E TI + T +++ + + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 85 AVGALLVYDITKRQTFDNVTRWLRE-LRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQIL 143
G L+VY +T + +F++V R+ + LR + +++ NK DL HLR V + + +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 144 AEKEGLSFLETSALE-ALNVEKAFQTIL 170
A K + ++ETSA + LNV+K F ++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 130 ----------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 73
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 132
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 125
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
H R V E+ + +A + G ++E SA V + F+
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 82
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 141
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLRQD 144
Query: 130 NHLR---------AVAAEDAQILAEK-EGLSFLETSALEALNVEKAFQ 167
H R V +E+ + +A + +LE SA V + F+
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 90
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + +F + F + TI + T +++ + + DTAGQE + A+ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 85 AVGALLVYDITKRQTFDNVTRWLRE-LRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQIL 143
G L+VY +T + +F++V R+ + LR + +++ NK DL HLR V + + +
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 144 AEKEGLSFLETSALE-ALNVEKAFQTIL 170
A K + ++ETSA + LNV+K F ++
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLV 172
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 130 ----------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 144
Query: 130 NHLR---------AVAAEDAQILAEK-EGLSFLETSALEALNVEKAFQ 167
H R V +E+ + +A + +LE SA V + F+
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + +F + F + TI + T +++ + + DTAGQE + A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 85 AVGALLVYDITKRQTFDNVTRWLRE-LRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQIL 143
G L+VY +T + +F++V R+ + LR + +++ NK DL HLR V + + +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 144 AEKEGLSFLETSALE-ALNVEKAFQTIL 170
A K + ++ETSA + LNV+K F ++
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L F++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHL 132
Y Y L+ + I + +N+ +W E++ H N+ I++ GNK DL +
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 133 RAVAAEDAQILAEK 146
A E A++ E
Sbjct: 125 EHTARELAKMKQEP 138
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H + I++ G K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A + G + +LE SAL ++ F
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
KIV++GDS GK+ +L F ++ F T+ E T + +++ + ++ +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y + L+ +DI++ +T D+V +W E+++ N +++ G KSDL
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126
Query: 130 --------NHLRAVAAED--AQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHI 176
NH + + D A + + +++E SAL++ N + DI+H+
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR-------DIFHV 176
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
KIV++GDS GK+ +L F ++ F T+ E T + +++ + ++ +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y + L+ +DI++ +T D+V +W E+++ N +++ G KSDL
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 147
Query: 130 --------NHLRAVAAED--AQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHI 176
NH + + D A + + +++E SAL++ N + DI+H+
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR-------DIFHV 197
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 64
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H + I++ G K DL
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 123
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A + G + +LE SAL ++ F
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 64
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H + I++ G K DL
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDD 123
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A + G + +LE SAL ++ F
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N E T+ ++ + V+GK V +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 130 ----------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+ K V +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y L+ + + +++NV +W E+R H S +I++ G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILV-GTKLDLRD 121
Query: 130 ----------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAF 166
L + LA E + + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
KIV++GDS GK+ +L F ++ F T+ E T + +++ + ++ +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y + L+ +DI++ +T D+V +W E+++ N +++ G KSDL
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 142
Query: 130 --------NHLRAVAAED--AQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHI 176
NH + + D A + + +++E SAL++ N + DI+H+
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR-------DIFHV 192
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 130 ----------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAG E
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 66
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 125
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLE 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 130 ----------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 35/187 (18%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 73 RYRAITSAYYRGAVGALLVYDITKR-------------------QTFDNV-TRWLRELRD 112
Y + Y VG DIT R +F+NV +W E+R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 113 HADSNIVIMMAGNKSDL------------NHLRAVAAEDAQILAEKEG-LSFLETSALEA 159
H N I++ G K DL L + +A++ G + +LE SAL
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 160 LNVEKAF 166
++ F
Sbjct: 184 RGLKTVF 190
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N F E T+ ++ + V+GK V +WDTAG E
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 90
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W E+R H N I++ G K DL
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 149
Query: 130 ---------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
L + +A++ G + +LE SAL ++ F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Query: 12 LFKIVLIGDSGVGKSNILSRFT-RNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70
L+++VL+GD GVGK+++ S F + E L + +G + RTL V+G+ + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 71 QERYRAITS--AYYRGAVGALLVYDITKRQTFDNVTRWLRELR-DHADSNIVIMMAGNKS 127
E+ S + +G ++VY I R +F++ + +LR H ++ I++ GNK+
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 128 DLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167
DL R V+ E+ + A F+ETSA NV + F+
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L ++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQTILLDIYHIISK 179
H R V E+ + +A + G ++E SA V + F+ + ++
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE--------MATR 176
Query: 180 KALAAQEAASSTG 192
AL A+ +G
Sbjct: 177 AALQARRGKKKSG 189
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L ++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQTILLDIYHIISK 179
H R V E+ + +A + G ++E SA V + F+ + ++
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE--------MATR 176
Query: 180 KALAAQEAASSTG 192
AL A+ +G
Sbjct: 177 AALQARRGKKKSG 189
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+++ + G GVGKS+++ RF + F ES + + + + QI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTF-RESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 62
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDN---VTRWLRELRDHADSNIVIMMAGNKSDL 129
++ A+ +LVY IT RQ+ + + + E++ +S I IM+ GNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES-IPIMLVGNKCDE 121
Query: 130 NHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
+ R V + +A+ LA +F+ETSA NV++ FQ +L
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+ K V +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y L+ + + +++NV +W E+R H S +I++ G K DL
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILV-GTKLDLRD 127
Query: 130 ----------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAF 166
L + LA E + + +LE SAL ++ F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L ++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
H R V E+ + +A + G ++E SA V + F+
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L ++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
H R V E+ + +A + G ++E SA V + F+
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L ++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
H R V E+ + +A + G ++E SA V + F+
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K V++GD VGK+ +L +T N F E T+ ++ + V+ K V +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y L+ + + +++NV +W E+R H S +I++ G K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILV-GTKLDLRD 128
Query: 130 ----------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAF 166
L + LA E + + +LE SAL ++ F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
KIV++GD VGK+ +L F++ E T+ F + ++ + + +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNH 131
Y + Y + LL + + R +FDN+ T+W E++ + D+ +++ G K DL
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLV-GLKVDLRK 141
Query: 132 LRA--VAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
+ V ++ L +K G ++++E S++ + + + F+
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFE 180
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 6/159 (3%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
KIV++GD VGK+ +L F++ E T+ F + ++ + + +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDL-- 129
Y + Y + LL + + R +FDN+ T+W E++ + D+ +++ G K DL
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLV-GLKVDLRK 140
Query: 130 NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
+ V ++ L +K G ++++E S++ + + + F+
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFE 179
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L ++++F T+ E ++V+GK V+ +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRQD 124
Query: 130 NHLR---------AVAAEDAQILAEK-EGLSFLETSALEALNVEKAFQ 167
H R V +E+ + +A + +LE SA V + F+
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 2 AYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTV 61
A +D L K V++GD VGK+ +L +T N F E T+ ++ + V+GK V
Sbjct: 145 AENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPV 203
Query: 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVI 120
+WDTAG E Y + Y L+ + + +F +V +W E+R H N I
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPI 262
Query: 121 MMAGNKSDL------------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
++ G K DL L + +A++ G + +LE SAL ++ F
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 2 AYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTV 61
A +D L K V++GD VGK+ +L +T N F E T+ ++ + V+GK V
Sbjct: 145 AENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPV 203
Query: 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVI 120
+WDTAG E Y + Y L+ + + +F +V +W E+R H N I
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPI 262
Query: 121 MMAGNKSDL------------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
++ G K DL L + +A++ G + +LE SAL ++ F
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 2 AYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTV 61
A +D L K V++GD VGK+ +L +T N F E T+ ++ + V+GK V
Sbjct: 145 AENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPV 203
Query: 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVI 120
+WDTAG E Y + Y L+ + + +F +V +W E+R H N I
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPI 262
Query: 121 MMAGNKSDL------------NHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166
++ G K DL L + +A++ G + +LE SAL ++ F
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 17/168 (10%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI-GVEFATRTLQVEGKT---VKAQIWDT 68
+++VLIG+ GVGKS + + F ++S + G + RTL V+G++ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERY-----RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS-NIVIMM 122
G+ + + AY L+VY IT R +F+ + +LR + +I I++
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 123 AGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
GNKSDL R V+ + + A F+ETSA NV++ F+ I+
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 167
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI-GVEFATRTLQVEGKT---VKAQIWDT 68
+++VLIG+ GVGKS + + F ++S + G + RTL V+G++ + +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 69 AGQERY-----RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRD-HADSNIVIMM 122
G+ + + AY L+VY IT R +F+ + +LR +I I++
Sbjct: 98 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 123 AGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
GNKSDL R V+ + + A F+ETSA NV++ F+ I+
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L ++++F T+ E ++V+GK V+ +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + I + +N+ +W E++ H N+ I++ GNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 130 NHLR---------AVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167
H R V E+ + +A + G ++E SA V + F+
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
+ K V++GD VGK+ +L + + F E T+ +A ++ V GK ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSD-- 128
E Y + Y L+ + + +F NV W+ EL+++A N+ ++ G + D
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 129 --------LNHL--RAVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQTILLDI 173
LN + + + E Q LA++ G ++E SAL ++ F ++ I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 132
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 184
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 177
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAIL 174
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAIL 174
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 176
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 126
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 178
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 123
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 175
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 124
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 176
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 125
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 177
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 129
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 181
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGVEFATRTLQVEGKT---VKAQIWDT 68
+++VLIG+ GVGKS + + F ++S +G + RTL V+G++ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERY-----RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRD-HADSNIVIMM 122
G+ + + AY L+VY IT R +F+ + +LR +I I++
Sbjct: 67 KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 123 AGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
GNKSDL R V+ + + A F+ETSA NV++ F+ I+
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIV 167
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGVEFATRTLQVEGKT---VKAQIWDT 68
+++VLIG+ GVGKS + + F ++S +G + RTL V+G++ + +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERY-----RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRD-HADSNIVIMM 122
G+ + + AY L+VY IT R +F+ + +LR +I I++
Sbjct: 67 KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 123 AGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170
GNKSDL R V+ + + A F+ETSA NV++ F+ I+
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIV 167
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 129
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 181
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ + DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E + +A T+ + G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+VL+GD GK+ +L ++ + E+ E T L+ E + V+ +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDN-VTRWLRELRDHADSNIVIMMAGNKSDL 129
Y + Y + LL +DI++ +T D+ + +W E+ D+ S V+++ G K+DL
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI-GCKTDL 127
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+ E T+ +A T+ + G+ ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+VL+GD GK+ +L ++ + E+ E T L+ E + V+ +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDN-VTRWLRELRDHADSNIVIMMAGNKSDL 129
Y + Y + LL +DI++ +T D+ + +W E+ D+ S V+++ G K+DL
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI-GCKTDL 126
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+VL+GD GK+ +L ++ + E+ E T L+ E + V+ +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDN-VTRWLRELRDHADSNIVIMMAGNKSDL 129
Y + Y + LL +DI++ +T D+ + +W E+ D+ S V+++ G K+DL
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI-GCKTDL 143
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K V++GD VGK+ +L +T N+F E T+ +A T+ + G+ ++DTAG E
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 67
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y L+ + + +F+NV +W+ E+ H ++ G + DL
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 126
Query: 130 ---------NHLRAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTILL 171
N + + E A+ LA + + + ++E SAL ++ F +L
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 178
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS + +F F + TI +F + ++V+ +I DTAG E++ ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 85 AVGALLVYDITKRQTFDNVTRWLRE--LRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQI 142
G +LVY + +Q+F ++ + +R+ +R + +++ GNK DL R V++ + +
Sbjct: 75 GQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA 133
Query: 143 LAEKEGLSFLETSALEALNVEKAFQTIL 170
LAE+ G F+ETSA V++ F I+
Sbjct: 134 LAEEWGCPFMETSAKSKTMVDELFAEIV 161
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K+V++GD GK+ +L ++ +F T+ E ++V+G+ V+ +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDL--- 129
Y + Y + L+ + I + +NV +W+ E+ H + I++ G K DL
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 130 ----NHLR-----AVAAEDAQILAEKEGLS-FLETSALEALNVEKAFQ 167
LR V +++ Q +A++ G + + E SA V + F+
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
++K++L+G GVGKS + F E E+++ G + R++ V+G+ ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 59
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSN-IVIMMAGNKSDLN 130
+ R + ++VY +T + +F+ + +LR ++ + I++ GNKSDL
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 131 HLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V+ ++ + A F+ETSA NV+ F+ ++ I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
++K++L+G GVGKS + F E E+++ G + R++ V+G+ ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSN-IVIMMAGNKSDLN 130
+ R + ++VY +T + +F+ + +LR ++ + I++ GNKSDL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 131 HLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V+ ++ + A F+ETSA NV+ F+ ++ I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71
++K++L+G GVGKS + F E E+++ G + R++ V+G+ ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVDGEEASLMVYDIWEQ 64
Query: 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSN-IVIMMAGNKSDLN 130
+ R + ++VY +T + +F+ + +LR ++ + I++ GNKSDL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 131 HLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
R V+ ++ + A F+ETSA NV+ F+ ++ I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + + + + T+G T T K VK +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 377
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL------RELRDHADSNIVIMMAGNK 126
+ R + YY G G + V D R D + L RE+RD +I++ NK
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD-----AIILIFANK 432
Query: 127 SDL 129
DL
Sbjct: 433 QDL 435
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA---QIW 66
D +FK++L+G+SGVGKS + F + + + R + V+ + V IW
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 67 ---DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELR-DHADSNIVIMM 122
D G R + + L+V+ +T R++F V L LR ++ +++
Sbjct: 81 EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 123 AGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173
GNKSDL R V+ E+ + LA +ETSA N + F+ + I
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + + + + T+G T T K VK +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 67
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + YY G G + V D R D + L R + D + +I++ NK DL
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 132 LRAVAAEDAQILAEKEGLS 150
A+ + Q EK GL+
Sbjct: 128 --AMKPHEIQ---EKLGLT 141
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + + + + T+G T T K VK +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 68
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + YY G G + V D R D + L R + D + +I++ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 132 LRAVAAEDAQILAEKEGLS 150
A+ + Q EK GL+
Sbjct: 129 --AMKPHEIQ---EKLGLT 142
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + + + + T+G T T K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 55
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + YY G G + V D R D + L R + D + +I++ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 132 LRAVAAEDAQILAEKEGLS 150
A+ + Q EK GL+
Sbjct: 116 --AMKPHEIQ---EKLGLT 129
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + + + + T+G T T K VK +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 55
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + YY G G + V D R D + L R + D + +I++ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
Query: 132 LRAVAAEDAQILAEKEGLS 150
A+ + Q EK GL+
Sbjct: 116 --AMKPHEIQ---EKLGLT 129
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
+I+ +G GK+ IL + + + + T+G T T K VK +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNHL 132
R + YY G G + V D R D + L R + D + +I++ NK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD- 115
Query: 133 RAVAAEDAQILAEKEGLS 150
A + EK GL+
Sbjct: 116 ----AXKPHEIQEKLGLT 129
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G G GK+ +L + E + + TIG T V+ K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
R R++ YYR G + V D R + R L + N V ++ NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPE 132
Query: 132 LRAVAAEDAQILAEKEGL 149
A A + EK GL
Sbjct: 133 -----AMSAAEITEKLGL 145
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 24/171 (14%)
Query: 10 DYLFKIVLIGDSGVGKSNILSRFT----RNEFCLESKSTIGVEFATRTLQVEGKTVKA-- 63
D +FK++L+G+SGVGKS + F N +E+ + R + V+ + V
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSE----DTYERRIMVDKEEVTLIV 65
Query: 64 -QIW---DTAG--QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELR-DHADS 116
IW D G Q+ A+ L+V+ +T R++F V L LR
Sbjct: 66 YDIWEQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHH 118
Query: 117 NIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167
++ +++ GNKSDL R V+ E+ + LA +ETSA N + F+
Sbjct: 119 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 169
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + E + + TIG T VE K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLR------ELRDHADSNIVIMMAGNK 126
R R + Y++ G + V D R+ V L+ ELRD V+++ NK
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDA-----VLLLFANK 127
Query: 127 SDLNHLRAVA 136
DL + A++
Sbjct: 128 QDLPNAMAIS 137
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 12 LFKIVLIGDSGVGKSNILSRF--TRNEFCLESKSTIGVEFATRTLQVEGKTVKA---QIW 66
+FK++L+G+SGVGKS + F + + E +++ + R + V+ + V IW
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS--EDTYERRIMVDKEEVTLIVYDIW 59
Query: 67 ---DTAG--QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELR-DHADSNIVI 120
D G Q+ A+ L+V+ +T R++F V L LR ++ +
Sbjct: 60 EQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 112
Query: 121 MMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167
++ GNKSDL R V+ E+ + LA +ETSA N + F+
Sbjct: 113 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 159
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G G GK+ +L + E + + TIG T V+ K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
R R++ YYR G + V D R + R L + N ++ NK DL
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 132
Query: 132 LRAVAAEDAQILAEKEGL 149
A A + EK GL
Sbjct: 133 -----AMSAAEITEKLGL 145
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G G GK+ +L + E + + TIG T V+ K + +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
R R++ YYR G + V D R + R L + N ++ NK DL
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
Query: 132 LRAVAAEDAQILAEKEGL 149
A A + EK GL
Sbjct: 116 -----AMSAAEITEKLGL 128
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + + + + T+G T T K VK +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 57
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + YY G G + V D R D + L R + D + +I++ NK DL
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
Query: 132 LRAVAAEDAQILAEKEGLS 150
A+ + Q EK GL+
Sbjct: 118 --AMKPHEIQ---EKLGLT 131
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + + + + T+G T T K VK +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 58
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + YY G G + V D R D + L R + D + +I++ NK DL
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
Query: 132 LRAVAAEDAQILAEKEGLS 150
A+ + Q EK GL+
Sbjct: 119 --AMKPHEIQ---EKLGLT 132
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + + + + T+G T T K VK +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGLD 68
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + YY G G + V D R D + L R + D + +I++ NK DL
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128
Query: 132 LRAVAAEDAQILAEKEGLS 150
A+ + Q EK GL+
Sbjct: 129 --AMKPHEIQ---EKLGLT 142
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 25 KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84
KS+++ RF + F TI + + + + QI DT G ++ A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 85 AVGALLVYDITKRQTFDN---VTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQ 141
+LV+ +T +Q+ + + + + +++ + +I +M+ GNK D R V +AQ
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCDETQ-REVDTREAQ 137
Query: 142 ILAEKEGLSFLETSALEALNVEKAFQTIL 170
+A++ +F+ETSA NV++ FQ +L
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELL 166
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 1 MAYKVDHEYDYLF-----KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQ 55
M V ++ LF +I+++G GK+ IL + E + + TIG T
Sbjct: 1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGE-VVTTIPTIGFNVET---- 55
Query: 56 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHA 114
VE + + +WD GQ++ R + YY G + V D R+ D+ L R + +
Sbjct: 56 VEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEE 115
Query: 115 DSNIVIMMAGNKSDL 129
+ +I++ NK DL
Sbjct: 116 LKDAIILVFANKQDL 130
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
++ L+G GK+ ++ +F + T+G F R +V V +IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMR--KVTKGNVTIKIWDIGGQP 78
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNH 131
R+R++ Y RG + + D R+ + L L D I +++ GNK DL +
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 132 LRAVAAEDAQILAEKEGLSFLE 153
A D + L EK LS ++
Sbjct: 139 -----ALDEKQLIEKMNLSAIQ 155
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + E + + TIG T VE K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 73 RYRAITSAYYRGAVGALLVYDITKR----QTFDNVTRWLR--ELRDHADSNIVIMMAGNK 126
+ R + Y++ G + V D R ++ D + + L+ ELRD V+++ NK
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRD-----AVLLVFANK 139
Query: 127 SDLNHLRAVAAEDAQILAEKEGLSFLET 154
D+ + V+ L +K GL L +
Sbjct: 140 QDMPNAMPVSE-----LTDKLGLQHLRS 162
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 21/146 (14%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + E + + TIG T VE K + +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 73 RYRAITSAYYRGAVGALLVYDITKR----QTFDNVTRWLR--ELRDHADSNIVIMMAGNK 126
+ R + Y++ G + V D R + D + R L ELRD V+++ NK
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD-----AVLLVFANK 130
Query: 127 SDLNHLRAVAAEDAQILAEKEGLSFL 152
DL + A +A + +K GL L
Sbjct: 131 QDLPN-----AMNAAEITDKLGLHSL 151
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + E + + TIG T VE K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + Y++ G + V D R+ + L R L + + V+++ NK DL +
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132
Query: 132 LRAVAAEDAQILAEKEGLSFL 152
A +A + +K GL L
Sbjct: 133 -----AMNAAEITDKLGLHSL 148
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + E + + TIG T VE K + +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + Y++ G + V D R+ + L R L + + V+++ NK DL +
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 132 LRAVAAEDAQILAEKEGLSFL 152
A +A + +K GL L
Sbjct: 116 -----AMNAAEITDKLGLHSL 131
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + E + + TIG T VE K + +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + Y++ G + V D R+ + L R L + + V+++ NK DL +
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131
Query: 132 LRAVAAEDAQILAEKEGLSFL 152
A +A + +K GL L
Sbjct: 132 -----AMNAAEITDKLGLHSL 147
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + E + + TIG T VE K + +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + Y++ G + V D R+ + L R L + + V+++ NK DL +
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
Query: 132 LRAVAAEDAQILAEKEGLSFL 152
A +A + +K GL L
Sbjct: 281 -----AMNAAEITDKLGLHSL 296
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 14 KIVLIGDSGVGKSNILSRF--TRNEFCLESKSTIGVEFATRTLQVEGKTVK---AQIWDT 68
K+ ++G++G GK+ +L + T+ +T+G++ +Q+ K + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQT-FDNVTRWLRELRDHADSNIVIMMAG--N 125
AG+E + + + L VYD++K Q D WL ++ A S+ VI++ +
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHLD 121
Query: 126 KSDLNHLRAVAAEDAQILAEKEGLS 150
SD +A ++ + L K G
Sbjct: 122 VSDEKQRKACXSKITKELLNKRGFP 146
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 14 KIVLIGDSGVGKSNILSRF--TRNEFCLESKSTIGVEFATRTLQVEGKTVK---AQIWDT 68
K+ ++G++G GK+ +L + T+ +T+G++ +Q+ K + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 69 AGQERYRAITSAYYRGAVGALLVYDITKRQT-FDNVTRWLRELRDHADSNIVIMMAG--N 125
AG+E + + + L VYD++K Q D WL ++ A S+ VI++ +
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHLD 123
Query: 126 KSDLNHLRAVAAEDAQILAEKEGLS 150
SD +A ++ + L K G
Sbjct: 124 VSDEKQRKACXSKITKELLNKRGFP 148
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
++ L+G GK+ ++ +F + T+G F R + T+K +WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 78
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNH 131
R+R++ Y RG + + D ++ + L L D I +++ GNK DL
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP- 137
Query: 132 LRAVAAEDAQILAEKEGLSFLE 153
A D + L EK LS ++
Sbjct: 138 ----GALDEKELIEKMNLSAIQ 155
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK++IL + E + + TIG T VE K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNH 131
+ R + YY+ + V D R L ++ + + N ++++ NK DL
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 132 LRAVAAEDAQILAEKEGL 149
+++ + EK GL
Sbjct: 133 AMSISE-----VTEKLGL 145
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
++ L+G GK+ ++ +F + T+G F R + T+K +WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNH 131
R+R++ Y RG + + D ++ + L L D I +++ GNK DL
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP- 146
Query: 132 LRAVAAEDAQILAEKEGLSFLE 153
A D + L EK LS ++
Sbjct: 147 ----GALDEKELIEKMNLSAIQ 164
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G G GK+ IL R E + +K TIG F TL K +K +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGE-VVTTKPTIG--FNVETLSY--KNLKLNVWDLGGQT 73
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL------RELRDHADSNIVIMMAGNK 126
R YY + V D T + ++ L EL+D A +++ NK
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-----LLVFANK 128
Query: 127 SD 128
D
Sbjct: 129 QD 130
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K++++G GK+ IL +F+ NE + + TIG + ++ + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIG----SNVEEIVINNTRFLMWDIGGQES 77
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHL 132
R+ + YY ++V D T R+ L ++ H D +++ NK D+
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 133 RAVAAEDAQIL 143
V AE +Q L
Sbjct: 138 MTV-AEISQFL 147
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K++++G GK+ IL +F+ NE + + TIG + ++ + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIG----SNVEEIVINNTRFLMWDIGGQES 78
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHL 132
R+ + YY ++V D T R+ L ++ H D +++ NK D+
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 133 RAVAAEDAQIL 143
V AE +Q L
Sbjct: 139 MTV-AEISQFL 148
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K++++G GK+ IL +F+ NE + + TIG + ++ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIG----SNVEEIVINNTRFLMWDIGGQES 72
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHL 132
R+ + YY ++V D T R+ L ++ H D +++ NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 133 RAVAAEDAQIL 143
V AE +Q L
Sbjct: 133 MTV-AEISQFL 142
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K++++G GK+ IL +F+ NE + + TIG + ++ + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIG----SNVEEIVINNTRFLMWDIGGQES 72
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHL 132
R+ + YY ++V D T R+ L ++ H D +++ NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132
Query: 133 RAVAAEDAQIL 143
V AE +Q L
Sbjct: 133 MTV-AEISQFL 142
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G GK+ IL + E + + TIG T VE K + +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
+ R + Y++ G + V D R+ + L R L + + V+++ NK DL +
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 117
Query: 132 LRAVAAEDAQILAEKEGLSFL 152
A +A + +K GL L
Sbjct: 118 -----AMNAAEITDKLGLHSL 133
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
K++++G GK+ IL +F NE + + TIG + ++ K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEV-VHTSPTIG----SNVEEIVVKNTHFLMWDIGGQES 72
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDL 129
R+ + YY +LV D R+ L + H D +++ NK D+
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDM 129
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+++++G GK+ IL +F + S T+G F +TL+ G K IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLG--FNIKTLEHRG--FKLNIWDVGGQK 71
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELR-DHADSNIVIMMAGNKSDL-- 129
R+ Y+ G + V D RQ + R L+ L + + +++ NK DL
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 131
Query: 130 ----NHLRAVAAEDA 140
N +R V D+
Sbjct: 132 ALSSNAIREVLELDS 146
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+++++G GK+ IL +F + S T+G F +TL+ G K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELR-DHADSNIVIMMAGNKSDL 129
R+ Y+ G + V D RQ + R L+ L + + +++ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+++++G GK+ IL +F + S T+G F +TL+ G K IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELR-DHADSNIVIMMAGNKSDL 129
R+ Y+ G + V D RQ + R L+ L + + +++ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G G GK+ +L + E + + TIG V+ + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVEC----VQYCNISFTVWDVGGQD 72
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNH 131
R R++ YY G + V D R + R L + N ++ NK DL
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPE 132
Query: 132 LRAVAAEDAQILAEKEGL 149
A A + EK GL
Sbjct: 133 -----AMSAAEITEKLGL 145
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 6/157 (3%)
Query: 15 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74
+ ++G G GKS + +F F E + +++ V+ + V ++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 75 RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS---NIVIMMAGNKSDLNH 131
R Y A L+VY + RQ+FD+ + +L L HA +I ++ GNK D+
Sbjct: 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 132 LRAVAAEDAQILAEKEGLSFLETSA-LEALNVEKAFQ 167
R V + LA + G F E SA L+ +V+ F
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFH 178
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 13/178 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
++ ++GD+ GKS+++ RF + + K+ E + + V+G+T I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRW---LRELRDHADSNIVIMMAGNKSDL 129
A + + A + V+ + +F V+R L LR + + + G + +
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 130 NHLRAVAAEDAQ---ILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKKALAA 184
+ DA+ + A+ + S+ ET A LNV++ FQ + + + ++ L A
Sbjct: 121 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G G GK+ IL R E + + TIG T T K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVETVTY----KNLKFQVWDLGGQT 57
Query: 73 RYRAITSAYYRGAVGALLVYDITKR 97
R YY + V D R
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDR 82
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 13/178 (7%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
++ ++GD+ GKS+++ RF + + K+ E + + V+G+T I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRW---LRELRDHADSNIVIMMAGNKSDL 129
A + + A + V+ + +F V+R L LR + + + G + +
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 130 NHLRAVAAEDAQ---ILAEKEGLSFLETSALEALNVEKAFQTILLDIYHIISKKALAA 184
+ DA+ + A+ + S+ ET A LNV++ FQ + + + ++ L A
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 24 GKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR 83
GK+ IL +F + S T+G F +TL+ G K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKFNGEDVDTIS-PTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 84 GAVGALLVYDITKRQTFDNVTRWLRELR-DHADSNIVIMMAGNKSDL 129
G + V D RQ + R L+ L + + +++ NK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
+I+++G G GK+ IL R E + + TIG T T K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVETVTY----KNLKFQVWDLGGLT 59
Query: 73 RYRAITSAYYRGAVGALLVYDITKR 97
R YY + V D R
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDR 84
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
+I+++G G GK+ IL R E + + TIG T T K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGE-VVTTIPTIGFNVETVTY----KNLKFQVWDLGGLTS 63
Query: 74 YRAITSAYYRGAVGALLVYDITKR 97
R YY + V D R
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDR 87
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 4 KVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA 63
K+ D +I+L+G GK+ +L + + S T F +++Q +G K
Sbjct: 9 KLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKL 63
Query: 64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFD 101
+WD GQ + R +Y+ + V D R+ F+
Sbjct: 64 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 4 KVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA 63
K+ D +I+L+G GK+ +L + + S T F +++Q +G K
Sbjct: 8 KLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKL 62
Query: 64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTR-WLRELRDHADSNIVIMM 122
+WD GQ + R +Y+ + V D R+ F+ + L + S + +++
Sbjct: 63 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 122
Query: 123 AGNKSDL 129
NK DL
Sbjct: 123 FANKQDL 129
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATR-TLQVEG-------KTVKAQI 65
K+ LIGD GK+++L + F + T G+ T+ ++G K
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 66 WDTAGQERYRAITSAYY-RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAG 124
WD GQE A + R +V LL+ +T N WLR + + + VI++
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLL----DSRTDSNKHYWLRHIEKYGGKSPVIVVM- 157
Query: 125 NKSDLN 130
NK D N
Sbjct: 158 NKIDEN 163
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
+I+L+G GK+ +L + + S T F +++Q +G K +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTR-WLRELRDHADSNIVIMMAGNKSDL 129
R +Y+ + V D R+ F+ + L + S + +++ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 5 VDHEYDYL--FKIVLIGDSGVGKSNILSRFTRNEF 37
+D DYL F +L G SGVGKS+ILSR T E
Sbjct: 156 IDELVDYLEGFICILAGPSGVGKSSILSRLTGEEL 190
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD---SNIVIM 121
++D +GQ RYR + YY+ + V D + R L L +H D I I+
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130
Query: 122 MAGNKSDL 129
NK DL
Sbjct: 131 FFANKMDL 138
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69
D +++++G GK++IL R + + TLQ K + ++WD
Sbjct: 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTV---GVNLETLQY--KNISFEVWDLG 74
Query: 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSD 128
GQ R Y+ + V D T R L L D + ++++ NK D
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134
Query: 129 LNHLRAVAAEDAQILAEKEGLS 150
L AA +A+I AE+ G+S
Sbjct: 135 LPD----AASEAEI-AEQLGVS 151
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
+I+L+G GK+ +L + + S T F +++Q +G K +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI---SHITPTQGFNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTR-WLRELRDHADSNIVIMMAGNKSDL 129
R +Y+ + V D R+ F+ + L + S + +++ NK DL
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
K+ ++G+ GKS ++ R+ + ++ +S G F + + V+G++ I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTY-VQEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132
+ +A+ V + D QT N L R+ ++ +V++ + +
Sbjct: 79 ELQ--FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANP 136
Query: 133 RAVAAEDAQILA-EKEGLSFLETSALEALNVEKAFQTI 169
R + A+ L+ + + ++ ET A LNVE+ FQ +
Sbjct: 137 RVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDV 174
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64
+ F ++++G+SG+GKS +++ + E E RT+Q+E TV+ +
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIE 89
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 17/131 (12%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESK---STIGVEFATRTLQVEGKTVKAQIWDTAG 70
K++L+G SG GKS++ S N +++ +TI VE + L+ G + +WD G
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGG 64
Query: 71 Q----ERYRAITSAYYRGAVGALL-VYDITKRQTFDNV---TRWLRELRDHA-DSNIVIM 121
Q E Y + V L+ V+D+ + ++ + L++LR ++ D+ I ++
Sbjct: 65 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 124
Query: 122 MAGNKSDLNHL 132
+ +K DL L
Sbjct: 125 L--HKMDLVQL 133
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64
+ F ++++G+SG+GKS +++ + E E RT+Q+E TV+ +
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIE 57
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64
+ F + ++G+SG+GKS +++ + E + E RT+Q+E TV+ +
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIE 70
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64
+ F + ++G+SG+GKS +++ + E E RT+Q+E TV+ +
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIE 89
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 28/177 (15%)
Query: 13 FKIVLIGDSGVGKSN----ILSRFTRNE------FCLESKSTIGVEFATRTL-QVEGKTV 61
FKIV G GK+ I S+ E + T+ +F + +V+G
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHA------- 114
+ ++ GQ Y A RG G + V D + N +R +R++
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAES-MRNMRENLAEYGLTL 133
Query: 115 -DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQTI 169
D IVI + NK DL A+ E + + + EG LE A E V F+T+
Sbjct: 134 DDVPIVIQV--NKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGV---FETL 183
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI---GVEFATRTLQVEGKTVKAQIWDTA 69
F I+++G +GVGK+ + + R +F + KS + G F R VE + Q+W
Sbjct: 294 FVILMVGVNGVGKTTTIGKLAR-QFEQQGKSVMLAAGDTF--RAAAVE----QLQVW--- 343
Query: 70 GQERYRAITSAYYRGAVGALLVYD 93
GQ R A + GA A +++D
Sbjct: 344 GQ-RNNIPVIAQHTGADSASVIFD 366
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 87 GALLVYDITK--RQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQIL 143
G LL D+++ + FD+ +++ L + A + I++ K D R + DA
Sbjct: 165 GFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTF 222
Query: 144 A-EKEGLSFLETSALEALNVEKAFQTIL 170
A K+ L +ETSA +NV+ AF T++
Sbjct: 223 ALSKKNLQVVETSARSNVNVDLAFSTLV 250
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE--SKSTIGVEFATRTLQVEGKTVKAQI 65
+ F I+ +G++G+GKS ++ +F E + + GV+ + T ++ V+ ++
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 15 IVLIGDSGVGKSNILSRFTRNEFCLESKSTI 45
+ L+G SG GKS I+S R L+ K TI
Sbjct: 447 VALVGSSGCGKSTIISLLLRYYDVLKGKITI 477
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK--AQIWDTAGQ 71
K VL+G G GKS I R + +GV + +E +T + A I+ T G+
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAK---------ALGVGLLDTDVAIEQRTGRSIADIFATDGE 54
Query: 72 ERYRAITSAYYRGAV 86
+ +R I R A+
Sbjct: 55 QEFRRIEEDVVRAAL 69
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate And Adp At
2.15 Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate And Amppcp
At 2.85 Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate At 1.75
Angstrom Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK--AQIWDTAGQ 71
K VL+G G GKS I R + +GV + +E +T + A I+ T G+
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAK---------ALGVGLLDTDVAIEQRTGRSIADIFATDGE 54
Query: 72 ERYRAITSAYYRGAV 86
+ +R I R A+
Sbjct: 55 QEFRRIEEDVVRAAL 69
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 69/176 (39%), Gaps = 26/176 (14%)
Query: 13 FKIVLIGDSGVGKSN----ILSRFTRNE------FCLESKSTIGVEFATRTL-QVEGKTV 61
FKIV G GK+ I S+ E + T+ +F + +V+G
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEXVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV--TRWLRE-LRDHA---- 114
+ ++ GQ Y A RG G + V D + N R RE L ++
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLAEYGLTLD 134
Query: 115 DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQTI 169
D IVI + NK DL A+ E + + + EG LE A E V F+T+
Sbjct: 135 DVPIVIQV--NKRDLPD--ALPVEXVRAVVDPEGKFPVLEAVATEGKGV---FETL 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,561,577
Number of Sequences: 62578
Number of extensions: 195568
Number of successful extensions: 1321
Number of sequences better than 100.0: 368
Number of HSP's better than 100.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 731
Number of HSP's gapped (non-prelim): 372
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)