Query 042687
Match_columns 217
No_of_seqs 151 out of 1776
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:31:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 7.7E-45 1.7E-49 257.2 20.1 202 6-215 3-205 (205)
2 KOG0078 GTP-binding protein SE 100.0 6.2E-41 1.4E-45 240.7 21.6 179 2-180 2-180 (207)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 4.9E-41 1.1E-45 237.1 18.4 198 10-215 3-200 (200)
4 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.8E-40 3.9E-45 237.3 21.4 197 6-202 8-205 (222)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 7.4E-41 1.6E-45 236.3 18.4 168 11-178 21-189 (221)
6 PLN03110 Rab GTPase; Provision 100.0 4.2E-39 9.1E-44 242.7 24.6 214 1-215 1-215 (216)
7 KOG0098 GTPase Rab2, small G p 100.0 2E-39 4.3E-44 227.3 19.2 180 8-187 2-181 (216)
8 KOG0080 GTPase Rab18, small G 100.0 6.5E-39 1.4E-43 219.4 18.8 169 8-176 7-176 (209)
9 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.3E-38 4.9E-43 236.6 23.1 195 13-214 1-201 (201)
10 KOG0394 Ras-related GTPase [Ge 100.0 2.5E-38 5.4E-43 221.3 18.1 171 9-179 6-183 (210)
11 cd04121 Rab40 Rab40 subfamily. 100.0 7.4E-38 1.6E-42 230.7 20.5 166 9-175 3-168 (189)
12 KOG0079 GTP-binding protein H- 100.0 1.7E-38 3.8E-43 214.4 15.5 169 8-177 4-172 (198)
13 cd04120 Rab12 Rab12 subfamily. 100.0 2E-37 4.4E-42 230.4 22.3 164 13-176 1-165 (202)
14 cd04125 RabA_like RabA-like su 100.0 9.2E-37 2E-41 225.7 22.6 188 13-217 1-188 (188)
15 cd04110 Rab35 Rab35 subfamily. 100.0 1.1E-36 2.3E-41 227.1 22.6 171 9-180 3-173 (199)
16 KOG0093 GTPase Rab3, small G p 100.0 4.3E-37 9.4E-42 207.4 16.6 175 6-180 15-189 (193)
17 KOG0086 GTPase Rab4, small G p 100.0 2.9E-37 6.2E-42 209.7 15.5 186 4-189 1-186 (214)
18 KOG0095 GTPase Rab30, small G 100.0 7.7E-37 1.7E-41 206.9 15.3 208 8-216 3-211 (213)
19 cd04126 Rab20 Rab20 subfamily. 100.0 1.1E-35 2.5E-40 223.4 23.0 165 13-182 1-198 (220)
20 cd04122 Rab14 Rab14 subfamily. 100.0 1.2E-35 2.7E-40 215.4 22.4 164 12-175 2-165 (166)
21 cd04144 Ras2 Ras2 subfamily. 100.0 5.6E-36 1.2E-40 221.8 20.9 162 14-176 1-165 (190)
22 KOG0088 GTPase Rab21, small G 100.0 6.3E-37 1.4E-41 209.2 13.8 177 8-184 9-185 (218)
23 PTZ00369 Ras-like protein; Pro 100.0 1.9E-35 4E-40 218.8 21.9 164 11-175 4-168 (189)
24 PLN03108 Rab family protein; P 100.0 4.1E-35 9E-40 220.2 23.9 171 10-180 4-174 (210)
25 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.7E-35 5.9E-40 222.5 22.9 165 10-176 11-190 (232)
26 cd04112 Rab26 Rab26 subfamily. 100.0 1.7E-35 3.6E-40 219.4 21.3 163 13-175 1-164 (191)
27 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2E-35 4.4E-40 216.7 21.2 163 10-174 3-180 (182)
28 cd01867 Rab8_Rab10_Rab13_like 100.0 3.6E-35 7.8E-40 213.2 22.0 165 11-175 2-166 (167)
29 cd04133 Rop_like Rop subfamily 100.0 2.1E-35 4.6E-40 215.3 20.6 159 13-173 2-172 (176)
30 KOG0091 GTPase Rab39, small G 100.0 3.4E-36 7.4E-41 206.6 15.3 177 9-185 5-184 (213)
31 cd04117 Rab15 Rab15 subfamily. 100.0 6.8E-35 1.5E-39 210.5 21.3 160 13-172 1-160 (161)
32 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 6.8E-35 1.5E-39 212.6 20.9 164 12-176 2-166 (172)
33 cd04109 Rab28 Rab28 subfamily. 100.0 5.7E-35 1.2E-39 220.3 20.6 164 13-176 1-168 (215)
34 cd04131 Rnd Rnd subfamily. Th 100.0 7.9E-35 1.7E-39 213.1 20.6 161 12-174 1-176 (178)
35 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2E-34 4.3E-39 209.1 22.3 163 12-174 2-164 (166)
36 cd01865 Rab3 Rab3 subfamily. 100.0 2.2E-34 4.7E-39 208.7 22.4 162 13-174 2-163 (165)
37 cd04127 Rab27A Rab27a subfamil 100.0 2.4E-34 5.3E-39 211.3 22.3 167 10-176 2-179 (180)
38 cd01875 RhoG RhoG subfamily. 100.0 1.5E-34 3.3E-39 214.2 21.3 161 12-174 3-177 (191)
39 PF00071 Ras: Ras family; Int 100.0 2.5E-34 5.5E-39 207.6 21.8 161 14-174 1-161 (162)
40 cd04119 RJL RJL (RabJ-Like) su 100.0 2.3E-34 5E-39 208.7 21.3 162 13-174 1-167 (168)
41 cd01866 Rab2 Rab2 subfamily. 100.0 5.8E-34 1.3E-38 207.0 22.8 166 10-175 2-167 (168)
42 cd01868 Rab11_like Rab11-like. 100.0 5E-34 1.1E-38 206.7 22.3 163 11-173 2-164 (165)
43 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.4E-34 7.4E-39 210.5 21.3 162 13-175 1-167 (182)
44 cd04132 Rho4_like Rho4-like su 100.0 4.5E-34 9.7E-39 211.1 21.6 164 13-178 1-171 (187)
45 PLN03071 GTP-binding nuclear p 100.0 5.8E-34 1.3E-38 215.0 21.9 164 10-176 11-174 (219)
46 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 9.6E-34 2.1E-38 206.2 22.2 163 14-176 2-167 (170)
47 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 5.8E-34 1.3E-38 214.2 21.2 162 13-176 2-178 (222)
48 cd01864 Rab19 Rab19 subfamily. 100.0 1.1E-33 2.4E-38 204.9 21.6 162 11-172 2-164 (165)
49 cd04118 Rab24 Rab24 subfamily. 100.0 1.8E-33 3.9E-38 208.9 23.0 163 13-176 1-168 (193)
50 cd01874 Cdc42 Cdc42 subfamily. 100.0 8.1E-34 1.8E-38 207.4 20.2 159 13-173 2-174 (175)
51 cd04136 Rap_like Rap-like subf 100.0 1.3E-33 2.8E-38 204.1 20.6 160 13-173 2-162 (163)
52 cd04113 Rab4 Rab4 subfamily. 100.0 1.9E-33 4.1E-38 202.9 21.0 160 13-172 1-160 (161)
53 cd04134 Rho3 Rho3 subfamily. 100.0 2.2E-33 4.8E-38 207.7 21.5 159 14-174 2-174 (189)
54 cd04111 Rab39 Rab39 subfamily. 100.0 2.5E-33 5.3E-38 210.5 22.0 169 12-180 2-172 (211)
55 cd04175 Rap1 Rap1 subgroup. T 100.0 1.8E-33 3.9E-38 203.7 20.4 160 13-173 2-162 (164)
56 cd04106 Rab23_lke Rab23-like s 100.0 2.4E-33 5.2E-38 202.5 20.8 159 13-172 1-161 (162)
57 smart00175 RAB Rab subfamily o 100.0 5.3E-33 1.1E-37 201.0 21.6 163 13-175 1-163 (164)
58 KOG0081 GTPase Rab27, small G 100.0 3.7E-35 7.9E-40 200.7 8.9 178 4-181 1-188 (219)
59 cd00877 Ran Ran (Ras-related n 100.0 6.3E-33 1.4E-37 201.2 21.1 160 13-175 1-160 (166)
60 cd04176 Rap2 Rap2 subgroup. T 100.0 4.8E-33 1.1E-37 201.2 20.5 160 13-173 2-162 (163)
61 cd04116 Rab9 Rab9 subfamily. 100.0 9.6E-33 2.1E-37 201.0 21.9 162 10-172 3-169 (170)
62 cd04140 ARHI_like ARHI subfami 100.0 6.7E-33 1.5E-37 200.9 20.5 159 13-172 2-163 (165)
63 cd01871 Rac1_like Rac1-like su 100.0 7.8E-33 1.7E-37 202.1 20.3 158 13-172 2-173 (174)
64 KOG0097 GTPase Rab14, small G 100.0 5.7E-33 1.2E-37 186.7 17.6 181 7-187 6-186 (215)
65 cd04124 RabL2 RabL2 subfamily. 100.0 1.4E-32 2.9E-37 198.5 20.9 159 13-175 1-159 (161)
66 smart00173 RAS Ras subfamily o 100.0 1.3E-32 2.8E-37 199.1 20.7 161 13-174 1-162 (164)
67 cd01861 Rab6 Rab6 subfamily. 100.0 1.9E-32 4.1E-37 197.6 21.1 160 13-172 1-160 (161)
68 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.1E-32 4.6E-37 197.9 21.1 161 12-173 2-163 (164)
69 PLN03118 Rab family protein; P 100.0 6E-32 1.3E-36 203.3 24.3 167 9-176 11-179 (211)
70 cd01860 Rab5_related Rab5-rela 100.0 3.9E-32 8.5E-37 196.3 22.2 161 13-173 2-162 (163)
71 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.7E-32 5.9E-37 196.7 21.0 159 13-173 2-161 (162)
72 smart00176 RAN Ran (Ras-relate 100.0 2.4E-32 5.2E-37 202.8 20.5 156 18-176 1-156 (200)
73 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.9E-32 8.5E-37 197.8 21.2 162 12-173 2-168 (170)
74 cd04142 RRP22 RRP22 subfamily. 100.0 3.1E-32 6.7E-37 202.5 20.6 164 13-176 1-176 (198)
75 cd04123 Rab21 Rab21 subfamily. 100.0 8.5E-32 1.8E-36 194.1 21.9 161 13-173 1-161 (162)
76 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.3E-31 2.7E-36 193.9 21.2 160 13-173 1-163 (164)
77 cd01862 Rab7 Rab7 subfamily. 100.0 2.9E-31 6.2E-36 193.4 22.1 164 13-176 1-169 (172)
78 cd01873 RhoBTB RhoBTB subfamil 100.0 1.1E-31 2.3E-36 199.0 19.7 158 12-172 2-194 (195)
79 cd04143 Rhes_like Rhes_like su 100.0 1.5E-31 3.1E-36 204.8 20.9 160 13-173 1-170 (247)
80 smart00174 RHO Rho (Ras homolo 100.0 1.4E-31 3E-36 195.5 19.2 158 15-174 1-172 (174)
81 cd01863 Rab18 Rab18 subfamily. 100.0 4.6E-31 1E-35 190.4 21.2 159 13-172 1-160 (161)
82 cd04177 RSR1 RSR1 subgroup. R 100.0 4.1E-31 8.8E-36 192.1 21.0 161 13-174 2-164 (168)
83 cd04103 Centaurin_gamma Centau 100.0 2E-31 4.4E-36 191.5 19.2 153 13-172 1-157 (158)
84 cd04146 RERG_RasL11_like RERG/ 100.0 1.6E-31 3.4E-36 193.7 18.7 160 14-174 1-164 (165)
85 cd01892 Miro2 Miro2 subfamily. 100.0 1.9E-31 4.1E-36 193.9 19.2 163 10-174 2-166 (169)
86 cd04114 Rab30 Rab30 subfamily. 100.0 1E-30 2.2E-35 190.0 22.3 164 10-173 5-168 (169)
87 cd00154 Rab Rab family. Rab G 100.0 6.3E-31 1.4E-35 188.5 20.4 158 13-170 1-158 (159)
88 cd04148 RGK RGK subfamily. Th 100.0 6.5E-31 1.4E-35 198.7 20.8 162 13-176 1-165 (221)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 6.4E-31 1.4E-35 191.9 20.1 157 13-171 1-171 (173)
90 cd04135 Tc10 TC10 subfamily. 100.0 1.7E-30 3.6E-35 189.8 19.9 159 13-173 1-173 (174)
91 KOG0083 GTPase Rab26/Rab37, sm 100.0 7.9E-33 1.7E-37 184.1 6.6 160 16-175 1-161 (192)
92 cd04139 RalA_RalB RalA/RalB su 100.0 6.9E-30 1.5E-34 184.5 20.9 161 13-174 1-162 (164)
93 cd00876 Ras Ras family. The R 100.0 7.6E-30 1.6E-34 183.5 19.8 158 14-172 1-159 (160)
94 KOG0395 Ras-related GTPase [Ge 100.0 4.8E-30 1E-34 189.2 17.8 163 12-175 3-166 (196)
95 cd01870 RhoA_like RhoA-like su 100.0 1.8E-29 4E-34 184.4 20.6 159 13-173 2-174 (175)
96 KOG4252 GTP-binding protein [S 100.0 7.1E-32 1.5E-36 188.2 6.4 181 4-185 12-192 (246)
97 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.2E-30 2.6E-35 188.8 12.8 153 14-171 1-163 (164)
98 cd04149 Arf6 Arf6 subfamily. 100.0 7E-30 1.5E-34 185.5 16.9 154 11-171 8-167 (168)
99 cd04137 RheB Rheb (Ras Homolog 100.0 4.1E-29 9E-34 183.5 21.1 162 13-175 2-164 (180)
100 cd04147 Ras_dva Ras-dva subfam 100.0 3E-29 6.4E-34 186.9 20.0 160 14-174 1-163 (198)
101 PTZ00132 GTP-binding nuclear p 100.0 1E-28 2.2E-33 186.3 22.4 166 7-175 4-169 (215)
102 PLN00223 ADP-ribosylation fact 100.0 1.5E-29 3.3E-34 185.8 17.3 158 11-175 16-179 (181)
103 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.9E-29 6.3E-34 184.7 18.7 162 12-176 3-172 (183)
104 smart00177 ARF ARF-like small 100.0 6.2E-30 1.3E-34 187.0 14.7 156 11-173 12-173 (175)
105 cd04158 ARD1 ARD1 subfamily. 100.0 3E-29 6.5E-34 182.4 18.0 155 14-175 1-162 (169)
106 cd04129 Rho2 Rho2 subfamily. 100.0 8.7E-29 1.9E-33 182.8 20.7 161 13-175 2-174 (187)
107 cd00157 Rho Rho (Ras homology) 100.0 7.5E-29 1.6E-33 180.4 19.7 157 13-171 1-170 (171)
108 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.1E-28 2.4E-33 183.2 20.3 149 13-161 1-177 (202)
109 cd04150 Arf1_5_like Arf1-Arf5- 100.0 9.2E-30 2E-34 183.3 14.1 152 13-171 1-158 (159)
110 PTZ00133 ADP-ribosylation fact 100.0 9.9E-29 2.2E-33 181.6 18.3 160 11-177 16-181 (182)
111 cd01893 Miro1 Miro1 subfamily. 100.0 2E-28 4.2E-33 177.6 18.5 160 13-175 1-165 (166)
112 cd04154 Arl2 Arl2 subfamily. 100.0 1.2E-28 2.7E-33 179.8 17.4 155 10-171 12-172 (173)
113 KOG0393 Ras-related small GTPa 100.0 5.5E-29 1.2E-33 179.9 12.3 164 11-176 3-181 (198)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.4E-28 5.2E-33 177.3 13.9 153 14-171 1-166 (167)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.3E-27 2.9E-32 174.5 17.3 153 12-171 15-173 (174)
116 cd04157 Arl6 Arl6 subfamily. 100.0 7.9E-28 1.7E-32 173.5 15.8 152 14-171 1-161 (162)
117 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.4E-27 3.1E-32 171.9 15.1 152 14-171 1-159 (160)
118 PF00025 Arf: ADP-ribosylation 100.0 4.8E-27 1E-31 171.5 17.6 157 10-173 12-175 (175)
119 cd00879 Sar1 Sar1 subfamily. 100.0 3.9E-27 8.5E-32 174.4 17.1 155 11-172 18-189 (190)
120 cd04160 Arfrp1 Arfrp1 subfamil 100.0 4.4E-27 9.6E-32 170.5 16.6 152 14-171 1-166 (167)
121 cd04151 Arl1 Arl1 subfamily. 100.0 2.1E-27 4.6E-32 170.8 13.9 151 14-171 1-157 (158)
122 PTZ00099 rab6; Provisional 100.0 2.5E-26 5.5E-31 167.5 19.2 141 35-175 3-143 (176)
123 cd00878 Arf_Arl Arf (ADP-ribos 100.0 4.7E-27 1E-31 168.9 15.1 151 14-171 1-157 (158)
124 PLN00023 GTP-binding protein; 100.0 1.5E-26 3.2E-31 179.9 18.0 142 8-149 17-189 (334)
125 smart00178 SAR Sar1p-like memb 99.9 2.4E-26 5.1E-31 169.3 17.0 156 10-172 15-183 (184)
126 KOG0073 GTP-binding ADP-ribosy 99.9 1.2E-25 2.6E-30 154.9 17.5 161 10-175 14-179 (185)
127 cd04159 Arl10_like Arl10-like 99.9 1.3E-25 2.9E-30 160.9 16.7 151 15-171 2-158 (159)
128 cd01890 LepA LepA subfamily. 99.9 1.1E-25 2.3E-30 165.1 16.5 154 14-173 2-176 (179)
129 cd01897 NOG NOG1 is a nucleola 99.9 1.1E-25 2.3E-30 163.4 15.9 156 13-173 1-167 (168)
130 cd01898 Obg Obg subfamily. Th 99.9 9.9E-26 2.1E-30 163.9 15.2 157 14-172 2-169 (170)
131 TIGR00231 small_GTP small GTP- 99.9 6.7E-25 1.5E-29 156.9 18.1 157 13-170 2-160 (161)
132 COG1100 GTPase SAR1 and relate 99.9 2.1E-24 4.5E-29 163.3 21.0 170 13-182 6-193 (219)
133 cd01878 HflX HflX subfamily. 99.9 2E-25 4.4E-30 167.1 15.1 156 10-172 39-203 (204)
134 PRK12299 obgE GTPase CgtA; Rev 99.9 7.4E-25 1.6E-29 174.0 18.2 162 13-175 159-329 (335)
135 cd04155 Arl3 Arl3 subfamily. 99.9 8.6E-25 1.9E-29 159.4 16.7 152 10-171 12-172 (173)
136 cd04171 SelB SelB subfamily. 99.9 1.3E-24 2.8E-29 156.9 16.4 151 14-171 2-163 (164)
137 TIGR02528 EutP ethanolamine ut 99.9 3.6E-25 7.8E-30 156.4 12.4 134 14-170 2-141 (142)
138 KOG3883 Ras family small GTPas 99.9 1.8E-24 3.9E-29 147.4 14.8 174 11-185 8-186 (198)
139 KOG0070 GTP-binding ADP-ribosy 99.9 1.6E-24 3.5E-29 153.0 14.7 160 9-175 14-179 (181)
140 PRK04213 GTP-binding protein; 99.9 1.5E-25 3.3E-30 167.3 10.2 158 5-175 2-193 (201)
141 PF02421 FeoB_N: Ferrous iron 99.9 2.3E-24 4.9E-29 152.2 13.2 148 13-169 1-156 (156)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 5.4E-24 1.2E-28 154.4 15.5 156 14-173 2-165 (168)
143 cd00882 Ras_like_GTPase Ras-li 99.9 2.1E-23 4.5E-28 147.9 17.6 153 17-170 1-156 (157)
144 cd01879 FeoB Ferrous iron tran 99.9 1E-23 2.2E-28 151.4 16.0 148 17-173 1-156 (158)
145 cd01891 TypA_BipA TypA (tyrosi 99.9 5.6E-24 1.2E-28 158.0 13.5 149 13-165 3-173 (194)
146 TIGR02729 Obg_CgtA Obg family 99.9 2.2E-23 4.8E-28 165.4 17.5 159 13-173 158-328 (329)
147 TIGR03156 GTP_HflX GTP-binding 99.9 1.8E-23 4E-28 167.3 17.0 154 11-172 188-350 (351)
148 KOG0075 GTP-binding ADP-ribosy 99.9 4.1E-24 8.9E-29 144.7 10.4 156 12-173 20-181 (186)
149 KOG1673 Ras GTPases [General f 99.9 1.3E-23 2.9E-28 143.5 12.3 168 8-176 16-188 (205)
150 TIGR00436 era GTP-binding prot 99.9 4.7E-23 1E-27 160.4 16.4 152 14-173 2-163 (270)
151 cd01881 Obg_like The Obg-like 99.9 4.1E-23 8.8E-28 150.8 13.0 155 17-172 1-175 (176)
152 PF08477 Miro: Miro-like prote 99.9 9.8E-23 2.1E-27 139.6 13.3 114 14-128 1-119 (119)
153 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.8E-22 6E-27 164.8 17.8 153 11-177 202-363 (442)
154 cd01889 SelB_euk SelB subfamil 99.9 1.4E-22 3.1E-27 150.2 14.2 158 13-174 1-186 (192)
155 PRK15494 era GTPase Era; Provi 99.9 4E-22 8.7E-27 159.3 17.5 154 10-173 50-215 (339)
156 cd01894 EngA1 EngA1 subfamily. 99.9 3E-22 6.6E-27 143.4 14.4 146 16-172 1-156 (157)
157 PRK03003 GTP-binding protein D 99.9 3.5E-22 7.5E-27 166.6 16.7 159 11-175 210-383 (472)
158 TIGR01393 lepA GTP-binding pro 99.9 4.3E-22 9.4E-27 169.0 17.5 156 12-173 3-179 (595)
159 cd00881 GTP_translation_factor 99.9 3.2E-22 7E-27 147.6 14.5 154 14-173 1-186 (189)
160 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.5E-22 1.8E-26 141.0 16.1 146 13-173 2-156 (157)
161 PRK00454 engB GTP-binding prot 99.9 9.7E-22 2.1E-26 146.2 16.8 162 5-173 17-193 (196)
162 PRK12297 obgE GTPase CgtA; Rev 99.9 1.5E-21 3.2E-26 158.9 19.1 158 14-176 160-329 (424)
163 KOG0071 GTP-binding ADP-ribosy 99.9 7.1E-22 1.5E-26 132.8 14.2 155 12-173 17-177 (180)
164 PRK03003 GTP-binding protein D 99.9 5.9E-22 1.3E-26 165.2 17.1 156 10-175 36-200 (472)
165 PRK11058 GTPase HflX; Provisio 99.9 9.4E-22 2E-26 160.9 17.6 158 12-175 197-363 (426)
166 PRK15467 ethanolamine utilizat 99.9 5.4E-22 1.2E-26 142.5 13.8 140 14-175 3-148 (158)
167 PRK12296 obgE GTPase CgtA; Rev 99.9 1.4E-21 3.1E-26 160.9 17.7 162 13-177 160-343 (500)
168 PRK05291 trmE tRNA modificatio 99.9 7.2E-22 1.6E-26 163.2 15.7 149 11-175 214-371 (449)
169 TIGR00475 selB selenocysteine- 99.9 1.8E-21 4E-26 165.1 17.7 154 13-175 1-167 (581)
170 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.8E-22 3.9E-27 142.5 9.4 162 10-174 8-169 (216)
171 TIGR00487 IF-2 translation ini 99.9 2.2E-21 4.8E-26 164.0 17.9 153 11-171 86-247 (587)
172 cd01888 eIF2_gamma eIF2-gamma 99.9 1.1E-21 2.4E-26 146.5 14.1 159 13-173 1-198 (203)
173 TIGR03594 GTPase_EngA ribosome 99.9 4.2E-21 9.2E-26 158.9 18.7 159 10-175 170-345 (429)
174 PRK12298 obgE GTPase CgtA; Rev 99.9 6.6E-21 1.4E-25 154.3 17.9 160 14-175 161-334 (390)
175 TIGR03598 GTPase_YsxC ribosome 99.9 3.2E-21 6.8E-26 141.5 14.6 149 8-163 14-179 (179)
176 PF00009 GTP_EFTU: Elongation 99.9 1.9E-21 4E-26 143.8 13.2 159 11-173 2-186 (188)
177 cd04163 Era Era subfamily. Er 99.9 8.4E-21 1.8E-25 136.9 16.1 156 12-172 3-167 (168)
178 PRK00089 era GTPase Era; Revie 99.9 7.1E-21 1.5E-25 149.9 16.7 157 12-173 5-170 (292)
179 CHL00189 infB translation init 99.9 8.5E-21 1.8E-25 162.9 18.0 156 11-173 243-409 (742)
180 cd01895 EngA2 EngA2 subfamily. 99.9 1.5E-20 3.2E-25 136.6 16.7 155 12-172 2-173 (174)
181 PRK05306 infB translation init 99.9 1.3E-20 2.9E-25 162.9 16.6 156 10-171 288-449 (787)
182 COG1159 Era GTPase [General fu 99.9 1.5E-20 3.2E-25 142.9 14.7 158 12-174 6-172 (298)
183 cd04105 SR_beta Signal recogni 99.9 2.5E-20 5.4E-25 139.1 15.3 117 14-131 2-123 (203)
184 PRK05433 GTP-binding protein L 99.9 2.6E-20 5.6E-25 158.4 17.2 158 11-174 6-184 (600)
185 PRK00093 GTP-binding protein D 99.9 2.9E-20 6.4E-25 154.1 17.0 146 13-171 2-159 (435)
186 cd00880 Era_like Era (E. coli 99.9 2.1E-20 4.6E-25 133.7 13.5 151 17-172 1-162 (163)
187 TIGR00437 feoB ferrous iron tr 99.9 2.1E-20 4.5E-25 158.8 15.7 146 19-173 1-154 (591)
188 TIGR03594 GTPase_EngA ribosome 99.9 4.1E-20 8.9E-25 153.0 17.1 150 14-174 1-160 (429)
189 KOG0076 GTP-binding ADP-ribosy 99.8 5.9E-21 1.3E-25 133.0 9.2 159 12-176 17-189 (197)
190 PRK09554 feoB ferrous iron tra 99.8 2.1E-19 4.5E-24 156.2 18.5 153 12-173 3-167 (772)
191 cd01896 DRG The developmentall 99.8 6.5E-19 1.4E-23 134.0 18.1 151 14-173 2-225 (233)
192 PRK09518 bifunctional cytidyla 99.8 3.1E-19 6.8E-24 155.3 18.4 157 11-175 449-622 (712)
193 cd01876 YihA_EngB The YihA (En 99.8 2.6E-19 5.6E-24 129.4 15.2 150 14-172 1-169 (170)
194 PRK00093 GTP-binding protein D 99.8 2.5E-19 5.4E-24 148.6 16.9 158 11-175 172-345 (435)
195 COG2229 Predicted GTPase [Gene 99.8 7E-19 1.5E-23 124.3 16.1 156 11-172 9-176 (187)
196 KOG0074 GTP-binding ADP-ribosy 99.8 9.8E-20 2.1E-24 122.8 11.2 157 9-171 14-176 (185)
197 TIGR00491 aIF-2 translation in 99.8 3.2E-19 7E-24 150.8 17.2 154 13-173 5-215 (590)
198 PRK09518 bifunctional cytidyla 99.8 2.3E-19 4.9E-24 156.2 16.5 154 11-174 274-436 (712)
199 PF10662 PduV-EutP: Ethanolami 99.8 1.1E-19 2.3E-24 125.7 11.5 135 14-170 3-142 (143)
200 COG1160 Predicted GTPases [Gen 99.8 2.9E-19 6.3E-24 143.0 15.1 150 13-173 4-164 (444)
201 KOG4423 GTP-binding protein-li 99.8 2.6E-22 5.6E-27 141.3 -2.3 167 9-175 22-195 (229)
202 KOG0072 GTP-binding ADP-ribosy 99.8 2.4E-20 5.2E-25 126.0 7.0 158 10-174 16-179 (182)
203 TIGR00483 EF-1_alpha translati 99.8 2.9E-19 6.2E-24 147.5 14.6 154 10-167 5-200 (426)
204 TIGR01394 TypA_BipA GTP-bindin 99.8 3E-19 6.5E-24 151.5 14.6 156 14-173 3-190 (594)
205 PRK12317 elongation factor 1-a 99.8 2.2E-19 4.8E-24 148.2 13.4 154 10-167 4-198 (425)
206 PRK04000 translation initiatio 99.8 4.1E-19 8.9E-24 145.4 14.3 162 9-173 6-200 (411)
207 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.8E-18 3.9E-23 128.0 16.3 148 12-163 2-172 (195)
208 PRK10218 GTP-binding protein; 99.8 1.1E-18 2.3E-23 148.0 17.0 158 12-173 5-194 (607)
209 COG0218 Predicted GTPase [Gene 99.8 1.7E-18 3.7E-23 125.0 15.4 164 4-175 16-198 (200)
210 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.6E-19 5.6E-24 134.3 11.7 147 14-165 1-185 (208)
211 TIGR03680 eif2g_arch translati 99.8 4.4E-19 9.5E-24 145.3 14.0 161 11-173 3-195 (406)
212 PRK10512 selenocysteinyl-tRNA- 99.8 1.5E-18 3.2E-23 148.0 17.3 155 14-173 2-165 (614)
213 COG0486 ThdF Predicted GTPase 99.8 1.6E-18 3.4E-23 139.2 15.6 154 11-176 216-378 (454)
214 cd04168 TetM_like Tet(M)-like 99.8 1.8E-18 3.9E-23 131.8 14.8 113 14-130 1-129 (237)
215 PRK04004 translation initiatio 99.8 4.2E-18 9.1E-23 144.5 17.4 154 13-173 7-217 (586)
216 PRK12736 elongation factor Tu; 99.8 3.3E-18 7.2E-23 139.6 15.9 155 1-159 1-178 (394)
217 cd04167 Snu114p Snu114p subfam 99.8 1.7E-18 3.7E-23 130.4 12.9 113 14-130 2-136 (213)
218 CHL00071 tufA elongation facto 99.8 5E-18 1.1E-22 139.2 16.4 158 1-162 1-181 (409)
219 COG1160 Predicted GTPases [Gen 99.8 9.8E-18 2.1E-22 134.3 16.9 158 11-174 177-351 (444)
220 cd01883 EF1_alpha Eukaryotic e 99.8 2.5E-18 5.5E-23 129.9 12.4 148 14-164 1-195 (219)
221 TIGR00485 EF-Tu translation el 99.8 6.4E-18 1.4E-22 138.1 15.5 156 1-160 1-179 (394)
222 PRK12735 elongation factor Tu; 99.8 7.3E-18 1.6E-22 137.7 15.6 154 4-161 4-180 (396)
223 COG0370 FeoB Fe2+ transport sy 99.8 8.1E-18 1.7E-22 140.5 15.4 151 13-172 4-162 (653)
224 KOG1423 Ras-like GTPase ERA [C 99.8 1.3E-17 2.8E-22 126.7 14.5 162 8-173 68-270 (379)
225 KOG1489 Predicted GTP-binding 99.8 9.5E-18 2.1E-22 128.0 13.4 156 13-172 197-365 (366)
226 COG2262 HflX GTPases [General 99.8 2.2E-17 4.7E-22 130.5 15.8 161 9-176 189-358 (411)
227 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.2E-17 2.7E-22 126.1 13.8 154 14-171 1-220 (224)
228 COG1084 Predicted GTPase [Gene 99.8 3.7E-17 8.1E-22 125.6 14.5 159 11-175 167-337 (346)
229 cd01885 EF2 EF2 (for archaea a 99.8 2.9E-17 6.3E-22 123.6 13.3 113 14-130 2-138 (222)
230 KOG1707 Predicted Ras related/ 99.7 6.5E-18 1.4E-22 137.9 9.8 166 8-175 5-176 (625)
231 cd04104 p47_IIGP_like p47 (47- 99.7 1.5E-16 3.3E-21 118.3 16.2 161 13-181 2-191 (197)
232 cd04169 RF3 RF3 subfamily. Pe 99.7 9.1E-17 2E-21 124.4 15.0 115 13-131 3-137 (267)
233 PRK00049 elongation factor Tu; 99.7 1.9E-16 4.2E-21 129.3 16.5 156 2-161 2-180 (396)
234 KOG0077 Vesicle coat complex C 99.7 2.7E-17 5.8E-22 114.0 8.9 154 12-172 20-191 (193)
235 cd01850 CDC_Septin CDC/Septin. 99.7 2.7E-16 6E-21 122.3 15.4 143 11-158 3-186 (276)
236 PLN00043 elongation factor 1-a 99.7 2.1E-16 4.5E-21 130.5 13.7 151 10-164 5-203 (447)
237 PLN03127 Elongation factor Tu; 99.7 4.4E-16 9.6E-21 128.5 15.4 147 5-157 54-225 (447)
238 PRK00741 prfC peptide chain re 99.7 2.9E-16 6.3E-21 131.8 14.5 117 10-130 8-144 (526)
239 PRK05124 cysN sulfate adenylyl 99.7 1.3E-16 2.8E-21 132.8 12.2 153 9-166 24-217 (474)
240 PLN03126 Elongation factor Tu; 99.7 3.7E-16 7.9E-21 129.7 14.4 150 9-162 78-250 (478)
241 COG1163 DRG Predicted GTPase [ 99.7 8.2E-16 1.8E-20 118.0 15.1 155 10-173 61-288 (365)
242 TIGR02034 CysN sulfate adenyly 99.7 2.7E-16 5.9E-21 128.9 13.1 148 13-165 1-188 (406)
243 COG0532 InfB Translation initi 99.7 1.2E-15 2.7E-20 124.3 16.6 152 12-173 5-169 (509)
244 cd01886 EF-G Elongation factor 99.7 2.4E-16 5.2E-21 122.2 12.0 112 14-131 1-130 (270)
245 PRK13351 elongation factor G; 99.7 6.2E-16 1.3E-20 134.7 15.8 117 8-130 4-138 (687)
246 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 6.8E-16 1.5E-20 116.3 13.4 157 14-175 1-177 (232)
247 COG3596 Predicted GTPase [Gene 99.7 2.2E-16 4.9E-21 118.7 10.1 160 10-173 37-221 (296)
248 COG0536 Obg Predicted GTPase [ 99.7 9.1E-16 2E-20 118.6 13.4 163 14-177 161-336 (369)
249 cd04170 EF-G_bact Elongation f 99.7 9.2E-16 2E-20 119.4 13.7 132 14-153 1-150 (268)
250 KOG0462 Elongation factor-type 99.7 5.7E-16 1.2E-20 125.9 12.7 160 10-173 58-234 (650)
251 PTZ00327 eukaryotic translatio 99.7 8E-16 1.7E-20 126.9 13.7 161 10-173 32-232 (460)
252 PRK05506 bifunctional sulfate 99.7 6.5E-16 1.4E-20 133.3 13.6 152 8-164 20-211 (632)
253 PF01926 MMR_HSR1: 50S ribosom 99.7 2.7E-15 5.8E-20 102.2 14.0 106 14-126 1-116 (116)
254 cd01899 Ygr210 Ygr210 subfamil 99.7 1.8E-15 3.8E-20 119.5 14.3 81 15-95 1-110 (318)
255 PTZ00141 elongation factor 1- 99.7 1.7E-15 3.6E-20 125.2 14.5 152 10-164 5-203 (446)
256 TIGR00503 prfC peptide chain r 99.7 2.7E-15 5.7E-20 126.1 15.7 117 10-130 9-145 (527)
257 COG0481 LepA Membrane GTPase L 99.6 5.8E-15 1.3E-19 118.4 14.5 160 8-173 5-185 (603)
258 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 9.7E-15 2.1E-19 108.6 14.9 158 13-174 1-184 (196)
259 COG4917 EutP Ethanolamine util 99.6 1.9E-15 4.1E-20 100.1 8.7 136 14-171 3-143 (148)
260 PRK12739 elongation factor G; 99.6 1.2E-14 2.6E-19 126.5 16.2 116 9-130 5-138 (691)
261 PF09439 SRPRB: Signal recogni 99.6 4.9E-16 1.1E-20 112.2 6.1 116 12-131 3-126 (181)
262 TIGR00484 EF-G translation elo 99.6 7.4E-15 1.6E-19 127.9 14.5 122 4-131 2-141 (689)
263 KOG1145 Mitochondrial translat 99.6 1.9E-14 4.2E-19 117.1 15.5 152 11-172 152-314 (683)
264 COG5256 TEF1 Translation elong 99.6 1E-14 2.2E-19 115.5 12.0 155 10-165 5-202 (428)
265 KOG1191 Mitochondrial GTPase [ 99.6 1.1E-14 2.3E-19 117.3 11.3 163 11-176 267-452 (531)
266 PRK09866 hypothetical protein; 99.6 1.2E-13 2.7E-18 115.6 17.0 108 62-171 231-350 (741)
267 PRK00007 elongation factor G; 99.6 4E-14 8.6E-19 123.2 14.4 146 6-159 4-171 (693)
268 PRK09602 translation-associate 99.6 1E-13 2.2E-18 112.8 15.7 83 13-95 2-113 (396)
269 KOG3905 Dynein light intermedi 99.6 9.5E-14 2.1E-18 106.7 13.6 163 11-176 51-292 (473)
270 KOG1490 GTP-binding protein CR 99.6 4.4E-14 9.6E-19 114.0 12.0 171 11-184 167-351 (620)
271 KOG0090 Signal recognition par 99.6 7.6E-14 1.6E-18 101.1 11.1 154 13-172 39-237 (238)
272 PRK12740 elongation factor G; 99.5 1.7E-13 3.7E-18 119.3 14.9 107 18-130 1-125 (668)
273 TIGR00490 aEF-2 translation el 99.5 1.1E-13 2.4E-18 120.9 10.5 117 10-130 17-151 (720)
274 COG2895 CysN GTPases - Sulfate 99.5 4.9E-13 1.1E-17 103.9 12.5 150 9-163 3-192 (431)
275 PTZ00258 GTP-binding protein; 99.5 8.9E-13 1.9E-17 106.3 13.3 86 10-95 19-126 (390)
276 PRK14845 translation initiatio 99.5 1.4E-12 3.1E-17 116.1 15.7 143 24-173 473-672 (1049)
277 smart00010 small_GTPase Small 99.5 6.8E-13 1.5E-17 91.1 10.7 114 13-163 1-115 (124)
278 COG5257 GCD11 Translation init 99.5 2.4E-13 5.2E-18 104.4 9.0 162 10-173 8-201 (415)
279 KOG1707 Predicted Ras related/ 99.5 1.7E-12 3.7E-17 106.7 14.5 166 3-173 416-582 (625)
280 TIGR00157 ribosome small subun 99.5 2.8E-13 6.1E-18 103.8 9.3 96 72-171 24-120 (245)
281 cd01853 Toc34_like Toc34-like 99.5 1.6E-12 3.4E-17 99.6 12.5 120 9-131 28-163 (249)
282 PRK13768 GTPase; Provisional 99.4 1.6E-12 3.5E-17 100.1 11.7 111 62-173 98-246 (253)
283 PF05783 DLIC: Dynein light in 99.4 4.5E-12 9.7E-17 104.7 14.8 163 11-176 24-266 (472)
284 KOG1532 GTPase XAB1, interacts 99.4 1.6E-12 3.4E-17 97.9 10.8 116 61-176 116-266 (366)
285 TIGR00101 ureG urease accessor 99.4 4.4E-12 9.5E-17 94.2 13.0 101 62-173 93-195 (199)
286 TIGR00991 3a0901s02IAP34 GTP-b 99.4 4.3E-12 9.4E-17 98.9 12.9 121 9-131 35-167 (313)
287 PLN00116 translation elongatio 99.4 1.2E-12 2.6E-17 116.1 11.0 118 9-130 16-163 (843)
288 PF04548 AIG1: AIG1 family; I 99.4 5.4E-12 1.2E-16 94.9 12.8 142 13-157 1-163 (212)
289 PRK07560 elongation factor EF- 99.4 4.5E-12 9.7E-17 111.1 14.2 118 9-130 17-152 (731)
290 TIGR02836 spore_IV_A stage IV 99.4 1.6E-11 3.4E-16 98.3 15.6 142 11-157 16-218 (492)
291 PTZ00416 elongation factor 2; 99.4 2.3E-12 5E-17 114.1 10.8 118 9-130 16-157 (836)
292 KOG1144 Translation initiation 99.4 3.4E-12 7.4E-17 107.3 11.2 163 12-181 475-694 (1064)
293 PRK09435 membrane ATPase/prote 99.4 7.4E-12 1.6E-16 99.3 12.5 107 61-178 149-264 (332)
294 PRK09601 GTP-binding protein Y 99.4 2.5E-11 5.4E-16 97.0 15.5 83 13-95 3-107 (364)
295 cd00066 G-alpha G protein alph 99.4 3.8E-11 8.2E-16 95.5 16.3 117 60-176 160-313 (317)
296 KOG0461 Selenocysteine-specifi 99.4 7.7E-12 1.7E-16 97.1 11.9 163 10-176 5-191 (522)
297 TIGR00073 hypB hydrogenase acc 99.4 6.1E-12 1.3E-16 94.3 11.0 56 117-172 148-205 (207)
298 COG1217 TypA Predicted membran 99.4 1E-11 2.2E-16 99.8 12.3 158 12-173 5-194 (603)
299 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.5E-11 3.3E-16 93.2 12.9 140 10-161 37-183 (225)
300 PF00350 Dynamin_N: Dynamin fa 99.4 6.8E-12 1.5E-16 90.9 10.0 62 63-127 103-168 (168)
301 PF03029 ATP_bind_1: Conserved 99.4 4.3E-13 9.2E-18 102.1 3.3 111 62-172 92-235 (238)
302 smart00275 G_alpha G protein a 99.3 1.7E-10 3.6E-15 92.6 17.6 117 61-177 184-337 (342)
303 KOG3886 GTP-binding protein [S 99.3 5.7E-12 1.2E-16 92.6 8.0 156 12-170 4-174 (295)
304 PF05049 IIGP: Interferon-indu 99.3 2E-11 4.3E-16 97.6 11.2 164 11-182 34-226 (376)
305 PF00735 Septin: Septin; Inte 99.3 4.9E-11 1.1E-15 93.0 12.1 138 11-153 3-180 (281)
306 COG0050 TufB GTPases - transla 99.3 5.8E-11 1.3E-15 90.4 11.6 152 1-158 1-177 (394)
307 cd01900 YchF YchF subfamily. 99.3 9.2E-11 2E-15 90.8 12.7 81 15-95 1-103 (274)
308 COG0480 FusA Translation elong 99.3 8.4E-11 1.8E-15 101.3 12.9 119 9-131 7-142 (697)
309 TIGR00750 lao LAO/AO transport 99.3 1.5E-10 3.3E-15 91.5 13.0 104 60-174 126-238 (300)
310 KOG0705 GTPase-activating prot 99.2 3.8E-11 8.2E-16 98.2 9.2 180 11-197 29-212 (749)
311 COG0378 HypB Ni2+-binding GTPa 99.2 8.1E-11 1.8E-15 84.8 9.1 54 120-173 145-200 (202)
312 smart00053 DYNc Dynamin, GTPas 99.2 2E-10 4.2E-15 87.3 11.6 67 62-131 126-206 (240)
313 COG3276 SelB Selenocysteine-sp 99.2 1.5E-10 3.2E-15 92.8 11.3 154 14-174 2-162 (447)
314 KOG0458 Elongation factor 1 al 99.2 4.6E-10 9.9E-15 92.6 13.9 154 9-165 174-373 (603)
315 COG4108 PrfC Peptide chain rel 99.2 2.3E-10 5E-15 91.5 9.9 117 11-131 11-147 (528)
316 COG0012 Predicted GTPase, prob 99.2 1.3E-09 2.9E-14 86.1 14.0 84 12-95 2-108 (372)
317 KOG0410 Predicted GTP binding 99.2 5.7E-11 1.2E-15 91.6 6.2 155 9-177 175-344 (410)
318 COG5019 CDC3 Septin family pro 99.2 8.6E-10 1.9E-14 86.7 12.2 115 11-130 22-175 (373)
319 KOG1486 GTP-binding protein DR 99.2 3E-09 6.6E-14 79.5 14.4 97 11-110 61-166 (364)
320 PF03308 ArgK: ArgK protein; 99.1 2.6E-10 5.6E-15 86.2 8.7 159 11-181 28-237 (266)
321 TIGR00993 3a0901s04IAP86 chlor 99.1 2.2E-09 4.7E-14 90.9 13.6 120 10-131 116-250 (763)
322 KOG0468 U5 snRNP-specific prot 99.1 6.9E-10 1.5E-14 92.8 10.2 117 9-129 125-261 (971)
323 KOG0082 G-protein alpha subuni 99.1 4.4E-09 9.6E-14 83.3 14.2 129 49-179 185-349 (354)
324 KOG1954 Endocytosis/signaling 99.1 1.1E-09 2.3E-14 86.1 10.1 124 5-131 51-225 (532)
325 PRK10463 hydrogenase nickel in 99.1 6.1E-10 1.3E-14 86.3 8.0 55 118-172 231-287 (290)
326 cd01855 YqeH YqeH. YqeH is an 99.1 1.3E-09 2.8E-14 80.6 9.3 95 72-173 22-124 (190)
327 cd01859 MJ1464 MJ1464. This f 99.1 6.9E-10 1.5E-14 79.4 7.5 94 74-173 2-95 (156)
328 PRK12289 GTPase RsgA; Reviewed 99.1 2.1E-09 4.4E-14 86.3 10.7 92 76-172 81-173 (352)
329 KOG2655 Septin family protein 99.0 7.1E-09 1.5E-13 82.2 13.4 143 11-158 20-201 (366)
330 KOG1547 Septin CDC10 and relat 99.0 4.6E-09 9.9E-14 78.0 9.5 145 11-160 45-229 (336)
331 cd01854 YjeQ_engC YjeQ/EngC. 99.0 2.6E-09 5.6E-14 83.9 8.8 88 79-171 73-161 (287)
332 COG1703 ArgK Putative periplas 99.0 1.6E-08 3.5E-13 77.7 12.0 106 61-178 144-258 (323)
333 COG5258 GTPBP1 GTPase [General 99.0 1.6E-08 3.5E-13 80.0 11.9 157 8-168 113-333 (527)
334 PRK00098 GTPase RsgA; Reviewed 99.0 3.1E-09 6.7E-14 83.9 8.0 87 81-171 77-164 (298)
335 PRK12288 GTPase RsgA; Reviewed 98.9 7.2E-09 1.6E-13 83.2 9.8 87 82-171 118-205 (347)
336 KOG0460 Mitochondrial translat 98.9 1.7E-08 3.8E-13 78.6 9.9 145 10-157 52-218 (449)
337 KOG3887 Predicted small GTPase 98.8 5.9E-08 1.3E-12 72.3 10.5 164 12-178 27-206 (347)
338 KOG2486 Predicted GTPase [Gene 98.8 9.6E-09 2.1E-13 77.9 6.5 159 6-171 130-313 (320)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.2E-08 2.6E-13 71.7 6.5 54 14-71 85-138 (141)
340 TIGR03597 GTPase_YqeH ribosome 98.8 3.1E-08 6.8E-13 80.2 8.9 95 71-172 50-151 (360)
341 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.7E-08 5.9E-13 71.3 7.1 56 11-70 101-156 (157)
342 cd04178 Nucleostemin_like Nucl 98.8 2.7E-08 5.8E-13 72.2 6.6 56 11-70 116-171 (172)
343 KOG1491 Predicted GTP-binding 98.8 4.1E-08 8.8E-13 76.5 7.9 85 11-95 19-125 (391)
344 COG5192 BMS1 GTP-binding prote 98.7 1.9E-07 4.1E-12 77.5 11.6 140 8-159 65-211 (1077)
345 KOG0466 Translation initiation 98.7 8.9E-09 1.9E-13 79.1 3.6 162 10-173 36-240 (466)
346 KOG1143 Predicted translation 98.7 1.6E-07 3.6E-12 74.2 10.1 151 11-165 166-379 (591)
347 KOG0448 Mitofusin 1 GTPase, in 98.7 3.9E-07 8.4E-12 77.0 12.8 117 11-131 108-275 (749)
348 KOG0464 Elongation factor G [T 98.7 2.1E-08 4.4E-13 80.2 4.6 117 11-131 36-168 (753)
349 COG1618 Predicted nucleotide k 98.7 2.6E-06 5.6E-11 59.9 14.4 146 11-173 4-175 (179)
350 cd01856 YlqF YlqF. Proteins o 98.7 6.6E-08 1.4E-12 70.3 6.8 58 10-71 113-170 (171)
351 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.2E-07 2.6E-12 67.9 8.0 91 80-173 4-94 (157)
352 TIGR00092 GTP-binding protein 98.7 1.1E-07 2.5E-12 76.2 8.5 83 13-95 3-108 (368)
353 TIGR03348 VI_IcmF type VI secr 98.7 5.3E-07 1.2E-11 83.2 13.9 114 14-131 113-257 (1169)
354 cd01855 YqeH YqeH. YqeH is an 98.6 7.4E-08 1.6E-12 71.2 5.9 56 12-70 127-189 (190)
355 cd01849 YlqF_related_GTPase Yl 98.6 3.9E-07 8.4E-12 65.1 9.1 85 86-174 1-85 (155)
356 KOG1487 GTP-binding protein DR 98.6 1.9E-07 4E-12 70.4 7.6 88 13-103 60-155 (358)
357 KOG0447 Dynamin-like GTP bindi 98.6 4E-06 8.7E-11 69.6 15.8 83 62-146 413-508 (980)
358 cd01859 MJ1464 MJ1464. This f 98.6 1.6E-07 3.5E-12 67.1 7.0 56 11-70 100-155 (156)
359 PF03193 DUF258: Protein of un 98.6 5.1E-08 1.1E-12 69.3 4.3 58 14-74 37-100 (161)
360 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.8E-07 4E-12 73.6 7.8 58 10-71 119-176 (287)
361 TIGR03596 GTPase_YlqF ribosome 98.6 1.6E-07 3.4E-12 73.5 7.3 57 11-71 117-173 (276)
362 cd01856 YlqF YlqF. Proteins o 98.6 2.6E-07 5.7E-12 67.1 7.6 91 75-173 10-100 (171)
363 KOG0467 Translation elongation 98.6 2.6E-07 5.7E-12 78.8 8.3 118 8-129 5-136 (887)
364 PF09547 Spore_IV_A: Stage IV 98.6 6.4E-06 1.4E-10 66.6 15.3 143 11-158 16-219 (492)
365 COG1161 Predicted GTPases [Gen 98.5 2E-07 4.4E-12 74.3 6.4 57 11-71 131-187 (322)
366 KOG0463 GTP-binding protein GP 98.5 1.9E-06 4E-11 68.5 10.2 151 11-165 132-349 (641)
367 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 6E-07 1.3E-11 63.1 6.9 77 79-161 6-84 (141)
368 PRK01889 GTPase RsgA; Reviewed 98.5 9.1E-07 2E-11 71.6 8.5 83 82-170 110-193 (356)
369 cd01849 YlqF_related_GTPase Yl 98.5 6.3E-07 1.4E-11 64.0 6.6 56 10-70 98-154 (155)
370 TIGR03596 GTPase_YlqF ribosome 98.5 1.1E-06 2.5E-11 68.7 8.6 99 69-175 5-104 (276)
371 cd01851 GBP Guanylate-binding 98.4 2.8E-06 6.1E-11 64.4 9.8 86 10-96 5-103 (224)
372 KOG0465 Mitochondrial elongati 98.4 9E-07 1.9E-11 74.0 7.2 119 10-132 37-171 (721)
373 PRK12288 GTPase RsgA; Reviewed 98.4 8.5E-07 1.8E-11 71.3 6.5 58 15-75 208-271 (347)
374 cd03112 CobW_like The function 98.4 2.8E-06 6E-11 60.9 8.4 22 14-35 2-23 (158)
375 KOG4273 Uncharacterized conser 98.4 7.1E-06 1.5E-10 61.8 10.6 161 13-175 5-223 (418)
376 COG1162 Predicted GTPases [Gen 98.4 8E-07 1.7E-11 69.0 5.5 59 14-75 166-230 (301)
377 PRK09563 rbgA GTPase YlqF; Rev 98.3 2.7E-06 5.9E-11 66.9 8.5 100 68-175 7-107 (287)
378 PRK13796 GTPase YqeH; Provisio 98.3 4.3E-06 9.2E-11 68.0 9.4 92 73-172 58-157 (365)
379 TIGR00064 ftsY signal recognit 98.3 1.4E-05 3E-10 62.3 11.9 96 61-168 155-262 (272)
380 TIGR01425 SRP54_euk signal rec 98.3 1.1E-05 2.3E-10 66.4 11.2 86 60-155 182-273 (429)
381 PRK14974 cell division protein 98.3 1E-05 2.2E-10 64.8 10.8 96 61-168 223-324 (336)
382 COG3523 IcmF Type VI protein s 98.3 7.3E-06 1.6E-10 74.5 11.0 113 15-131 128-270 (1188)
383 PRK12289 GTPase RsgA; Reviewed 98.3 1.3E-06 2.9E-11 70.3 5.8 56 15-73 175-236 (352)
384 PRK13796 GTPase YqeH; Provisio 98.3 1.4E-06 2.9E-11 70.9 5.9 56 13-71 161-220 (365)
385 TIGR00157 ribosome small subun 98.3 1.7E-06 3.8E-11 66.4 6.0 56 14-73 122-183 (245)
386 KOG3859 Septins (P-loop GTPase 98.3 4.4E-06 9.6E-11 63.8 8.0 117 10-131 40-190 (406)
387 PRK10416 signal recognition pa 98.3 1.9E-05 4.2E-10 62.9 11.8 145 11-167 113-303 (318)
388 TIGR03597 GTPase_YqeH ribosome 98.3 2.5E-06 5.4E-11 69.3 6.6 57 13-72 155-215 (360)
389 COG1162 Predicted GTPases [Gen 98.2 1.3E-05 2.7E-10 62.5 9.5 93 76-171 71-164 (301)
390 COG3640 CooC CO dehydrogenase 98.2 2E-05 4.2E-10 59.0 9.4 75 63-150 136-212 (255)
391 KOG1424 Predicted GTP-binding 98.1 3.3E-06 7.2E-11 69.4 4.8 56 12-71 314-369 (562)
392 PRK14722 flhF flagellar biosyn 98.1 2E-05 4.3E-10 63.8 9.1 137 12-155 137-315 (374)
393 PRK00098 GTPase RsgA; Reviewed 98.1 5.8E-06 1.3E-10 65.4 5.9 57 14-73 166-228 (298)
394 cd01854 YjeQ_engC YjeQ/EngC. 98.1 7.4E-06 1.6E-10 64.5 6.4 59 13-74 162-226 (287)
395 PF03266 NTPase_1: NTPase; In 98.1 4.4E-05 9.6E-10 55.2 9.8 135 14-162 1-163 (168)
396 PF00503 G-alpha: G-protein al 98.1 8.2E-05 1.8E-09 61.2 12.3 123 49-173 225-389 (389)
397 PRK13695 putative NTPase; Prov 98.1 0.00016 3.4E-09 52.6 12.0 22 13-34 1-22 (174)
398 PF00448 SRP54: SRP54-type pro 98.0 8E-05 1.7E-09 55.3 9.8 85 61-155 84-174 (196)
399 COG1419 FlhF Flagellar GTP-bin 98.0 0.00011 2.4E-09 59.5 10.9 134 12-155 203-372 (407)
400 PRK11889 flhF flagellar biosyn 98.0 0.0001 2.2E-09 59.9 10.6 133 13-155 242-411 (436)
401 cd03115 SRP The signal recogni 98.0 5.8E-05 1.3E-09 54.8 8.5 83 61-153 83-171 (173)
402 PRK14721 flhF flagellar biosyn 98.0 9.3E-05 2E-09 60.9 10.2 142 12-165 191-369 (420)
403 PRK12727 flagellar biosynthesi 98.0 0.00019 4.2E-09 60.4 12.2 137 12-162 350-523 (559)
404 KOG0459 Polypeptide release fa 97.9 2.9E-05 6.3E-10 62.3 6.4 154 10-166 77-278 (501)
405 cd02038 FleN-like FleN is a me 97.9 9.3E-05 2E-09 51.8 7.6 107 16-130 4-110 (139)
406 PF02492 cobW: CobW/HypB/UreG, 97.9 4.4E-05 9.5E-10 55.8 6.1 80 62-148 86-171 (178)
407 PRK11537 putative GTP-binding 97.9 0.00023 5E-09 56.8 10.5 23 13-35 5-27 (318)
408 PRK00771 signal recognition pa 97.8 0.00064 1.4E-08 56.5 13.2 85 62-156 177-267 (437)
409 COG0523 Putative GTPases (G3E 97.8 0.00024 5.2E-09 56.6 10.3 87 63-157 87-185 (323)
410 KOG2485 Conserved ATP/GTP bind 97.8 3.4E-05 7.3E-10 60.0 5.2 60 10-70 141-205 (335)
411 PRK10867 signal recognition pa 97.8 0.00035 7.5E-09 57.9 11.5 86 61-156 184-275 (433)
412 PRK12726 flagellar biosynthesi 97.8 0.00023 4.9E-09 57.7 10.0 134 12-156 206-377 (407)
413 cd03114 ArgK-like The function 97.8 9.8E-05 2.1E-09 52.3 7.1 57 61-128 92-148 (148)
414 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00012 2.5E-09 42.3 5.8 45 83-128 12-58 (58)
415 cd02042 ParA ParA and ParB of 97.8 0.00018 3.8E-09 47.6 7.7 82 15-108 2-84 (104)
416 TIGR00959 ffh signal recogniti 97.8 0.00015 3.2E-09 60.0 8.4 86 61-156 183-274 (428)
417 PRK14723 flhF flagellar biosyn 97.8 0.00055 1.2E-08 60.2 12.0 144 13-165 186-366 (767)
418 PRK12723 flagellar biosynthesi 97.7 0.00092 2E-08 54.7 12.5 90 61-162 255-351 (388)
419 PRK06995 flhF flagellar biosyn 97.7 0.00079 1.7E-08 56.5 12.0 92 62-165 336-434 (484)
420 KOG0085 G protein subunit Galp 97.7 7.4E-05 1.6E-09 55.8 4.9 119 59-177 197-352 (359)
421 KOG2484 GTPase [General functi 97.7 3.9E-05 8.5E-10 61.4 3.5 58 10-71 250-307 (435)
422 cd00009 AAA The AAA+ (ATPases 97.7 0.00045 9.7E-09 48.0 8.7 24 13-36 20-43 (151)
423 PRK06731 flhF flagellar biosyn 97.7 0.00092 2E-08 52.0 10.7 132 13-155 76-245 (270)
424 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00056 1.2E-08 44.1 8.2 68 15-96 2-70 (99)
425 KOG0469 Elongation factor 2 [T 97.6 6.6E-05 1.4E-09 62.0 4.4 114 12-129 19-162 (842)
426 PRK12724 flagellar biosynthesi 97.6 0.00039 8.4E-09 57.1 8.7 134 13-156 224-394 (432)
427 PRK05703 flhF flagellar biosyn 97.6 0.0013 2.7E-08 54.7 11.6 86 61-156 300-392 (424)
428 PF13401 AAA_22: AAA domain; P 97.5 9.7E-05 2.1E-09 50.9 3.6 24 13-36 5-28 (131)
429 PF13207 AAA_17: AAA domain; P 97.5 8.4E-05 1.8E-09 50.5 2.9 22 14-35 1-22 (121)
430 TIGR03574 selen_PSTK L-seryl-t 97.5 0.00078 1.7E-08 52.0 8.6 20 15-34 2-21 (249)
431 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0014 3E-08 47.8 9.0 24 13-36 26-49 (177)
432 PF11111 CENP-M: Centromere pr 97.5 0.0062 1.3E-07 43.7 11.8 139 11-173 14-152 (176)
433 PRK08118 topology modulation p 97.5 0.00011 2.4E-09 53.1 3.1 23 13-35 2-24 (167)
434 COG0563 Adk Adenylate kinase a 97.4 0.00011 2.4E-09 53.6 2.9 23 13-35 1-23 (178)
435 cd03111 CpaE_like This protein 97.4 0.0011 2.3E-08 44.1 7.4 100 18-126 6-106 (106)
436 cd03110 Fer4_NifH_child This p 97.4 0.0019 4.2E-08 47.1 9.3 86 59-153 91-176 (179)
437 PRK07261 topology modulation p 97.4 0.00014 3E-09 52.9 3.1 22 14-35 2-23 (171)
438 KOG1534 Putative transcription 97.4 0.00074 1.6E-08 49.9 6.5 23 12-34 3-25 (273)
439 PF13555 AAA_29: P-loop contai 97.4 0.00022 4.9E-09 42.2 3.0 22 14-35 25-46 (62)
440 PF13671 AAA_33: AAA domain; P 97.3 0.00018 3.8E-09 50.4 2.8 20 15-34 2-21 (143)
441 KOG0099 G protein subunit Galp 97.3 0.0025 5.5E-08 48.7 8.8 77 51-129 194-281 (379)
442 PRK14738 gmk guanylate kinase; 97.3 0.0005 1.1E-08 51.5 4.8 28 8-35 9-36 (206)
443 cd02019 NK Nucleoside/nucleoti 97.3 0.00029 6.4E-09 42.9 3.0 21 15-35 2-22 (69)
444 PF13521 AAA_28: AAA domain; P 97.3 0.00016 3.5E-09 52.0 2.0 22 14-35 1-22 (163)
445 TIGR00150 HI0065_YjeE ATPase, 97.2 0.0014 3.1E-08 45.3 6.5 24 13-36 23-46 (133)
446 PRK04195 replication factor C 97.2 0.0067 1.4E-07 51.5 11.9 24 12-35 39-62 (482)
447 TIGR02475 CobW cobalamin biosy 97.2 0.0081 1.8E-07 48.6 11.8 22 14-35 6-27 (341)
448 KOG2423 Nucleolar GTPase [Gene 97.2 0.00012 2.7E-09 58.7 1.3 84 9-99 304-389 (572)
449 COG1136 SalX ABC-type antimicr 97.2 0.00026 5.6E-09 53.3 2.9 22 14-35 33-54 (226)
450 COG1116 TauB ABC-type nitrate/ 97.2 0.00028 6E-09 53.5 3.0 24 14-37 31-54 (248)
451 KOG1533 Predicted GTPase [Gene 97.2 0.00033 7.1E-09 52.5 3.3 20 13-32 3-22 (290)
452 COG1126 GlnQ ABC-type polar am 97.2 0.00028 6.1E-09 52.4 2.9 25 13-37 29-53 (240)
453 PRK01889 GTPase RsgA; Reviewed 97.2 0.00053 1.1E-08 55.7 4.4 24 13-36 196-219 (356)
454 PF00005 ABC_tran: ABC transpo 97.2 0.00034 7.5E-09 48.6 2.9 23 14-36 13-35 (137)
455 cd02036 MinD Bacterial cell di 97.2 0.0098 2.1E-07 43.1 10.8 84 62-152 64-147 (179)
456 cd01131 PilT Pilus retraction 97.2 0.0018 3.9E-08 48.2 6.9 23 14-36 3-25 (198)
457 PF03205 MobB: Molybdopterin g 97.2 0.00037 8.1E-09 48.8 2.9 23 14-36 2-24 (140)
458 PRK05416 glmZ(sRNA)-inactivati 97.1 0.0081 1.8E-07 47.3 10.6 21 13-33 7-27 (288)
459 PF05621 TniB: Bacterial TniB 97.1 0.004 8.7E-08 48.9 8.7 104 10-127 59-190 (302)
460 PRK14737 gmk guanylate kinase; 97.1 0.00041 8.8E-09 51.1 3.1 24 13-36 5-28 (186)
461 cd00071 GMPK Guanosine monopho 97.1 0.00046 9.9E-09 48.2 3.0 21 15-35 2-22 (137)
462 PF02367 UPF0079: Uncharacteri 97.1 0.0014 3.1E-08 44.6 5.3 24 13-36 16-39 (123)
463 PRK06217 hypothetical protein; 97.1 0.00047 1E-08 50.6 3.1 23 13-35 2-24 (183)
464 TIGR00235 udk uridine kinase. 97.1 0.00062 1.3E-08 51.0 3.6 26 10-35 4-29 (207)
465 smart00382 AAA ATPases associa 97.1 0.00058 1.3E-08 47.0 3.3 25 13-37 3-27 (148)
466 PF13238 AAA_18: AAA domain; P 97.1 0.00048 1E-08 47.1 2.8 21 15-35 1-21 (129)
467 PRK10646 ADP-binding protein; 97.1 0.0047 1E-07 43.8 7.7 23 14-36 30-52 (153)
468 PRK10078 ribose 1,5-bisphospho 97.1 0.00056 1.2E-08 50.3 3.2 22 14-35 4-25 (186)
469 PF00004 AAA: ATPase family as 97.1 0.00053 1.1E-08 47.1 2.9 21 15-35 1-21 (132)
470 PRK03839 putative kinase; Prov 97.0 0.00054 1.2E-08 50.1 3.0 22 14-35 2-23 (180)
471 KOG0780 Signal recognition par 97.0 0.0025 5.4E-08 51.4 6.6 21 13-33 102-122 (483)
472 COG0194 Gmk Guanylate kinase [ 97.0 0.00037 8E-09 50.5 1.9 25 12-36 4-28 (191)
473 KOG0781 Signal recognition par 97.0 0.0096 2.1E-07 49.3 10.0 92 60-154 466-564 (587)
474 PF04665 Pox_A32: Poxvirus A32 97.0 0.00059 1.3E-08 52.0 3.0 25 11-35 12-36 (241)
475 PRK14530 adenylate kinase; Pro 97.0 0.00061 1.3E-08 51.3 3.1 22 13-34 4-25 (215)
476 TIGR02322 phosphon_PhnN phosph 97.0 0.00062 1.3E-08 49.7 3.0 22 14-35 3-24 (179)
477 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00069 1.5E-08 44.9 2.8 21 13-33 16-36 (107)
478 TIGR03263 guanyl_kin guanylate 97.0 0.00068 1.5E-08 49.5 3.0 22 14-35 3-24 (180)
479 COG3840 ThiQ ABC-type thiamine 96.9 0.0008 1.7E-08 48.8 3.0 22 13-34 26-47 (231)
480 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00074 1.6E-08 49.5 3.0 22 13-34 4-25 (188)
481 COG1120 FepC ABC-type cobalami 96.9 0.00075 1.6E-08 51.9 3.0 21 14-34 30-50 (258)
482 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.015 3.3E-07 40.8 9.5 23 14-36 28-50 (144)
483 cd03238 ABC_UvrA The excision 96.9 0.00085 1.8E-08 48.9 3.1 21 13-33 22-42 (176)
484 PRK05480 uridine/cytidine kina 96.9 0.00093 2E-08 50.1 3.4 25 11-35 5-29 (209)
485 cd02023 UMPK Uridine monophosp 96.9 0.00076 1.7E-08 50.1 2.9 21 15-35 2-22 (198)
486 PRK14531 adenylate kinase; Pro 96.9 0.00085 1.9E-08 49.2 3.1 23 13-35 3-25 (183)
487 COG3839 MalK ABC-type sugar tr 96.9 0.00094 2E-08 53.4 3.5 23 15-37 32-54 (338)
488 COG0802 Predicted ATPase or ki 96.9 0.0047 1E-07 43.3 6.5 25 13-37 26-50 (149)
489 PRK08727 hypothetical protein; 96.9 0.015 3.3E-07 44.4 10.0 21 15-35 44-64 (233)
490 PRK13949 shikimate kinase; Pro 96.9 0.00092 2E-08 48.4 3.1 21 14-34 3-23 (169)
491 cd01130 VirB11-like_ATPase Typ 96.9 0.00096 2.1E-08 49.1 3.2 25 12-36 25-49 (186)
492 PRK13851 type IV secretion sys 96.9 0.0045 9.8E-08 50.0 7.2 25 12-36 162-186 (344)
493 PRK10751 molybdopterin-guanine 96.9 0.00083 1.8E-08 48.6 2.7 23 13-35 7-29 (173)
494 PF07015 VirC1: VirC1 protein; 96.9 0.009 2E-07 45.1 8.3 102 61-167 84-187 (231)
495 PRK05541 adenylylsulfate kinas 96.9 0.0013 2.9E-08 47.8 3.8 23 13-35 8-30 (176)
496 PRK14532 adenylate kinase; Pro 96.9 0.00095 2.1E-08 49.1 3.1 21 14-34 2-22 (188)
497 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0011 2.4E-08 50.0 3.2 23 14-36 32-54 (218)
498 PRK08233 hypothetical protein; 96.8 0.0012 2.7E-08 48.1 3.4 23 13-35 4-26 (182)
499 PF03215 Rad17: Rad17 cell cyc 96.8 0.011 2.3E-07 50.5 9.3 22 14-35 47-68 (519)
500 COG4598 HisP ABC-type histidin 96.8 0.0044 9.5E-08 45.0 5.9 35 141-175 165-201 (256)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-45 Score=257.24 Aligned_cols=202 Identities=46% Similarity=0.777 Sum_probs=178.5
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCC
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA 85 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (217)
....++.+||+|+|..|||||.|+.||.++.|.+.+..|.++++....+.+++..++++||||+|+++|+++...|+++|
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCe-EEEecCCCCCCHHH
Q 042687 86 VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLS-FLETSALEALNVEK 164 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~gv~~ 164 (217)
+++|+|||+++.+||..+..|+.++..+...++|.++|+||+|+.+.+.+..++++.++..++++ ++++||+++.++++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCceeeecCCCCCcccccccc
Q 042687 165 AFQTILLDIYHIISKKALAAQEAASSTGLPQGTTINVANLSGNVKGKACCS 215 (217)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (217)
+|..|...+.+.+........ .....++..+.+.++..++||.
T Consensus 163 ~F~~la~~lk~~~~~~~~~~~--------~~~~~~ql~~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLHVKWST--------ASLESVQLKGTPVKKSNGGCCE 205 (205)
T ss_pred HHHHHHHHHHHhcccCCCCCc--------CCCCceeeCCCCcccccCCCCC
Confidence 999998887665443332221 1223333333455566666774
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-41 Score=240.73 Aligned_cols=179 Identities=46% Similarity=0.858 Sum_probs=170.6
Q ss_pred CCCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhh
Q 042687 2 AYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAY 81 (217)
Q Consensus 2 ~~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 81 (217)
+.|...++++.+||+++|.++||||+|+.+|..+.|...+..|.++++..+.+.+++..+.+++|||+|+++|+.+...|
T Consensus 2 ~~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sY 81 (207)
T KOG0078|consen 2 SAMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAY 81 (207)
T ss_pred CccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHH
Confidence 45656688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
++.|+++++|||+++..||+.+..|+..+.++.+.++|+++|+||+|+...+.+..+..+.++.++|++++|+||++|.|
T Consensus 82 yrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 82 YRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFN 161 (207)
T ss_pred HhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCC
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIYHIISKK 180 (217)
Q Consensus 162 v~~~~~~l~~~~~~~~~~~ 180 (217)
|++.|..|.+.+..+..+.
T Consensus 162 I~eaF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 162 IEEAFLSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHHHHHHHhhcchh
Confidence 9999999999997744443
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-41 Score=237.06 Aligned_cols=198 Identities=42% Similarity=0.697 Sum_probs=173.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...+||+++|..+||||||+.||..+.|.+...+|++..+....+.+++..++|.||||+|+++|.++.+.|+++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35699999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
+|||+++.+||..++.|+..+.+..+.++.+.+++||+|+.+.+.+..+++..++...+..++++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999988788888999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCceeeecCCCCCcccccccc
Q 042687 170 LLDIYHIISKKALAAQEAASSTGLPQGTTINVANLSGNVKGKACCS 215 (217)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (217)
.+.+.+...+... +.++-+.+..++..+ ++.... +||+
T Consensus 163 a~~lp~~~~~~~~------~~~~~~~g~~l~~~~-~~~~~~-~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQ------GLPNRRQGVDLNSNQ-EPARPS-GCCA 200 (200)
T ss_pred HHhccCccccccc------cccccccceecccCC-CCcCcC-CcCC
Confidence 9988665333322 222333555555554 333333 6663
No 4
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-40 Score=237.33 Aligned_cols=197 Identities=76% Similarity=1.116 Sum_probs=182.2
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCC
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA 85 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (217)
+.+.++.+||+++|+++||||-|+.||..+.|..+..+|.++++....+.++++.++.+||||+|+++|++....|++.|
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 86 VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
.++++|||++.+.+|+.+.+|+.+++.+.+.++++++|+||+||.+.+.+..+++..++...+..++++||.++.+++.+
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC-CCCCCceeeec
Q 042687 166 FQTILLDIYHIISKKALAAQEAASST-GLPQGTTINVA 202 (217)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 202 (217)
|..++..+++..+++........-.. ...+++.++..
T Consensus 168 F~~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~ 205 (222)
T KOG0087|consen 168 FERVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVH 205 (222)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCCCCCCcccccc
Confidence 99999999999998887776543322 44455555554
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-41 Score=236.26 Aligned_cols=168 Identities=36% Similarity=0.695 Sum_probs=158.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..+||+++|..+|||||||+||+.+.|...|.+|+|.++....+.+.++++.+++|||+|+++|+.+...|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCC-CCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
|||+++..||+...+|++.+....+. ++.+++|+||.||.+++++..+|.+..++++++.|+++||+.|.||.++|..|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 99999999999999999999887765 48888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 042687 170 LLDIYHIIS 178 (217)
Q Consensus 170 ~~~~~~~~~ 178 (217)
...+.++..
T Consensus 181 aa~l~~~~~ 189 (221)
T KOG0094|consen 181 AAALPGMEV 189 (221)
T ss_pred HHhccCccc
Confidence 887766533
No 6
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=4.2e-39 Score=242.73 Aligned_cols=214 Identities=89% Similarity=1.231 Sum_probs=178.1
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhh
Q 042687 1 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 80 (217)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (217)
|..+.....++.+||+++|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..
T Consensus 1 ~~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~ 80 (216)
T PLN03110 1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 80 (216)
T ss_pred CCCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence 45566667778899999999999999999999999988888888888888888889999999999999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCC
Q 042687 81 YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEAL 160 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 160 (217)
++++++++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..++...++...+++++++||++|.
T Consensus 81 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~ 160 (216)
T PLN03110 81 YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEAT 160 (216)
T ss_pred HhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999999999988776689999999999998777777888888998899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCCceeeecCCCCCcccccccc
Q 042687 161 NVEKAFQTILLDIYHIISKKALAAQEAASS-TGLPQGTTINVANLSGNVKGKACCS 215 (217)
Q Consensus 161 gv~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (217)
|++++|++|++.+.+...+........+.. ...++++.+...+- .+.+++|||+
T Consensus 161 ~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~c~ 215 (216)
T PLN03110 161 NVEKAFQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINVADT-SGNNKRGCCS 215 (216)
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccccCcCcCCcccccCc-cCCCCCCCcC
Confidence 999999999999988765544433322221 12234455555333 3345557875
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-39 Score=227.27 Aligned_cols=180 Identities=50% Similarity=0.852 Sum_probs=169.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
.+.+.+|++++|+.|||||.|+.+|+...|.+.++.|.+.++....+.++++.++++||||+|++.|++....|++.+.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++.+++|..+..|+..++.+...+..+++++||+||...+.++.+|.+.|++++++.++++||+++.|++++|.
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999999999999999999999877999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 042687 168 TILLDIYHIISKKALAAQEA 187 (217)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~ 187 (217)
.....+++..+..-......
T Consensus 162 nta~~Iy~~~q~g~~~~~~~ 181 (216)
T KOG0098|consen 162 NTAKEIYRKIQDGVFDDINE 181 (216)
T ss_pred HHHHHHHHHHHhcccccccc
Confidence 99999998876655444433
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.5e-39 Score=219.36 Aligned_cols=169 Identities=46% Similarity=0.733 Sum_probs=159.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
.+...+||+++|.+|||||||+.+|..+.|++....|++.++..+.+.+++..+++.||||+|+++|+.+...|++.|.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
+|+|||++.+++|..+..|+.++..+.. .++..++|+||+|.+..+.+..+|...|++++++-++++||++..|++..|
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 9999999999999999999999988764 466678999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 042687 167 QTILLDIYHI 176 (217)
Q Consensus 167 ~~l~~~~~~~ 176 (217)
+.+++++++.
T Consensus 167 eelveKIi~t 176 (209)
T KOG0080|consen 167 EELVEKIIET 176 (209)
T ss_pred HHHHHHHhcC
Confidence 9999988663
No 9
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-38 Score=236.60 Aligned_cols=195 Identities=35% Similarity=0.659 Sum_probs=164.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC-CeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
+||+|+|++|||||||+++|.++.+...+.+|.+.++....+.++ +..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988888998888877777777 7889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc----CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHA----DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAF 166 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~~~ 166 (217)
||++++++++.+..|+..+.... ..++|++||+||+|+...+.+..+++..++...+ .+++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876542 2478999999999997656777888999999998 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCceeeecCCCCCccccccc
Q 042687 167 QTILLDIYHIISKKALAAQEAASSTGLPQGTTINVANLSGNVKGKACC 214 (217)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (217)
++|++.+.+.......... ......+..++..++++.+|||
T Consensus 161 ~~l~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAET-------PEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhcC-------CCcccccccccceeccccCCCC
Confidence 9999988654333222222 1123455556666777777998
No 10
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.5e-38 Score=221.33 Aligned_cols=171 Identities=37% Similarity=0.681 Sum_probs=158.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
....+||+++|.+|+|||||++++++..|...+..|++.++..+.+.++++.+.++||||+|+++|+++...+++.+|..
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 35669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCCCCccc--cccCHHHHHHHHHHcC-CeEEEecCCCCCC
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHAD----SNIVIMMAGNKSDLNHL--RAVAAEDAQILAEKEG-LSFLETSALEALN 161 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~vSa~~~~g 161 (217)
++|||++++.+|+.+..|..++..... ...|+||++||+|+... +.++...+..++...| +|||++||+...|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 999999999999999999999877653 56899999999999663 7888899999998776 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIYHIISK 179 (217)
Q Consensus 162 v~~~~~~l~~~~~~~~~~ 179 (217)
|+++|..+.+.+++....
T Consensus 166 V~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 166 VDEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHHHhccch
Confidence 999999999998887655
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=7.4e-38 Score=230.66 Aligned_cols=166 Identities=39% Similarity=0.726 Sum_probs=153.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
.++.+||+|+|..|||||||+.+|..+.+...+.++.+.++....+.+++..+.+++||++|++.|..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999988877778888888778888899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
|+|||++++++++.+..|+..+....+ ++|++||+||.|+.+.+.+..++++.+++..+++++++||++|.|++++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 999999999999999999999977664 8999999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHH
Q 042687 169 ILLDIYH 175 (217)
Q Consensus 169 l~~~~~~ 175 (217)
|++.+..
T Consensus 162 l~~~i~~ 168 (189)
T cd04121 162 LARIVLM 168 (189)
T ss_pred HHHHHHH
Confidence 9987754
No 12
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.7e-38 Score=214.41 Aligned_cols=169 Identities=48% Similarity=0.819 Sum_probs=162.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
..+..++.+|+|.+|+|||+|+.+|..+.|...|..|++.++....+.++|..++++|||++|++.|+.+...|++..++
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+++|||+++.+||..+.+|++.+...++ .+|-++|+||.|.++.+.+..+++..++...++.+|++||+++.|++.+|.
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 9999999999999999999999999998 899999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 042687 168 TILLDIYHII 177 (217)
Q Consensus 168 ~l~~~~~~~~ 177 (217)
-|.+.++..+
T Consensus 163 cit~qvl~~k 172 (198)
T KOG0079|consen 163 CITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHH
Confidence 9999998887
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2e-37 Score=230.39 Aligned_cols=164 Identities=40% Similarity=0.795 Sum_probs=151.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+.|+++|..|||||||+++|..+.|...+.+|.+.++....+.+++..+.+++|||+|++.|+.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888899888888888899999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKE-GLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
|++++++++.+..|+..+......++|+++|+||+|+...+.+...++.+++... ++.++++||++|.|++++|.+|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887776668999999999999877888888888898875 789999999999999999999998
Q ss_pred HHHHH
Q 042687 172 DIYHI 176 (217)
Q Consensus 172 ~~~~~ 176 (217)
.+.+.
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 77553
No 14
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=9.2e-37 Score=225.69 Aligned_cols=188 Identities=41% Similarity=0.722 Sum_probs=161.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|.+|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998778888887777777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
|+++++++..+..|+..+........|+++++||+|+.+.+.+...++..++...+++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766678999999999998767777788888888889999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCceeeecCCCCCccccccccCC
Q 042687 173 IYHIISKKALAAQEAASSTGLPQGTTINVANLSGNVKGKACCSNQ 217 (217)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (217)
+.+..... .++..+.+++-+++.||+||
T Consensus 161 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 188 (188)
T cd04125 161 IIKRLEEQ-----------------ELSPKNIKQQFKKKNNCFIN 188 (188)
T ss_pred HHHHhhcC-----------------cCCccccccccccccCcccC
Confidence 85432111 22224455555666899987
No 15
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.1e-36 Score=227.15 Aligned_cols=171 Identities=47% Similarity=0.797 Sum_probs=153.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
.++.++|+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..++.++|++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 34679999999999999999999999998888888888888778888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
|+|||++++++++.+..|+..+..... ..|++||+||+|+.....+...+...++...+++++++||++|.|++++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 999999999999999999999877654 7899999999999876666777888888888999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 169 ILLDIYHIISKK 180 (217)
Q Consensus 169 l~~~~~~~~~~~ 180 (217)
|.+.+++.....
T Consensus 162 l~~~~~~~~~~~ 173 (199)
T cd04110 162 ITELVLRAKKDN 173 (199)
T ss_pred HHHHHHHhhhcc
Confidence 999887654333
No 16
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-37 Score=207.41 Aligned_cols=175 Identities=41% Similarity=0.770 Sum_probs=165.2
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCC
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA 85 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (217)
++..++.+|++|+|...+|||||+.++.+..|.+.+..|.+.++..+.+.-....+++++|||+|++.++.+...+++++
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 45677889999999999999999999999999999999999999998887777889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 86 VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
+++|++||+++.+|+..++.|...+......+.|+|+++||||+++++.+..+....++.++|..+|++||+.+.|++++
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQV 174 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 042687 166 FQTILLDIYHIISKK 180 (217)
Q Consensus 166 ~~~l~~~~~~~~~~~ 180 (217)
|+.++..+-+.++..
T Consensus 175 Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 175 FERLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999888776654
No 17
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-37 Score=209.74 Aligned_cols=186 Identities=49% Similarity=0.790 Sum_probs=174.9
Q ss_pred CCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhc
Q 042687 4 KVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR 83 (217)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 83 (217)
|+.+.+++.+|++++|+.|+|||.|+++|+.++|.++...|++.++....+.+++..++++||||+|+++|++..+.|++
T Consensus 1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYR 80 (214)
T KOG0086|consen 1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 80 (214)
T ss_pred CcchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 163 (217)
.|-++++|||++++++|+.+..|+...+......+.+++++||.|+...+++...++..|+.+..+-+.++|+++|.|++
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042687 164 KAFQTILLDIYHIISKKALAAQEAAS 189 (217)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 189 (217)
+.|-...+.++....-..+.+.+..+
T Consensus 161 EaFl~c~~tIl~kIE~GElDPer~gs 186 (214)
T KOG0086|consen 161 EAFLKCARTILNKIESGELDPERMGS 186 (214)
T ss_pred HHHHHHHHHHHHHHhhcCCCHHHccc
Confidence 99999999998887777766665543
No 18
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-37 Score=206.91 Aligned_cols=208 Identities=39% Similarity=0.683 Sum_probs=177.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
.+...+||+++|..|+|||.|+++|..+-|++....|.+.++..+.+.+++..++++||||+|+++|++....|++.|++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++...+|+.+.+|+.++.......+--++|+||.|+.+.+++.....++|+......++++||++.++++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999999988888999999999999889988889999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-hhhccCCCCCCceeeecCCCCCccccccccC
Q 042687 168 TILLDIYHIISKKALAAQ-EAASSTGLPQGTTINVANLSGNVKGKACCSN 216 (217)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (217)
.+.-.+....+.+..... ...-+..+..+.++..-.--+.+.. .||..
T Consensus 163 ~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~aqt~~~-~cc~~ 211 (213)
T KOG0095|consen 163 DLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYAQTQLL-TCCNF 211 (213)
T ss_pred HHHHHHHHHHHhccchhhccccCccccCCCCcccchhHHHHHHh-ccccc
Confidence 998777665554443222 2222223455566644444333333 77754
No 19
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.1e-35 Score=223.35 Aligned_cols=165 Identities=32% Similarity=0.534 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+|+|.+|||||||+++|..+.+.. +.+|.+.++....+ ..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 46666655543322 4578899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc-------------------ccccCHHHHHHHHHHcC-----
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH-------------------LRAVAAEDAQILAEKEG----- 148 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 148 (217)
|++++++++.+..|+..+......++|++||+||+|+.+ .+.+..+++..++...+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999998888887766555799999999999965 46777889999998876
Q ss_pred ---------CeEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042687 149 ---------LSFLETSALEALNVEKAFQTILLDIYHIISKKAL 182 (217)
Q Consensus 149 ---------~~~~~vSa~~~~gv~~~~~~l~~~~~~~~~~~~~ 182 (217)
++|+++||++|.|++++|.++++.+++...++..
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~ 198 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA 198 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 6899999999999999999999998876655544
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.2e-35 Score=215.42 Aligned_cols=164 Identities=51% Similarity=0.874 Sum_probs=150.4
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++..+++.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999888888888888777788888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
||++++++++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887776668999999999999877777788899999999999999999999999999999998
Q ss_pred HHHH
Q 042687 172 DIYH 175 (217)
Q Consensus 172 ~~~~ 175 (217)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7753
No 21
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=5.6e-36 Score=221.78 Aligned_cols=162 Identities=35% Similarity=0.584 Sum_probs=142.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
||+|+|.+|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999998877777776544 4456678888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 94 ITKRQTFDNVTRWLRELRDHAD---SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
++++++++.+..|+..+..... .+.|+++|+||+|+...+.+...+...++...+++++++||++|.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988876542 4789999999999977677777778888888899999999999999999999999
Q ss_pred HHHHHH
Q 042687 171 LDIYHI 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
+.+.+.
T Consensus 160 ~~l~~~ 165 (190)
T cd04144 160 RALRQQ 165 (190)
T ss_pred HHHHHh
Confidence 877544
No 22
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.3e-37 Score=209.21 Aligned_cols=177 Identities=37% Similarity=0.656 Sum_probs=163.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
-+...+||+++|..-+|||||+-+++.++|......|.-..+..+.+.+++....+.||||+|+++|..+-..|++..++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 34578999999999999999999999999998888887778888888999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+++|||++|++||+.++.|..+++......+-++||+||+|+++++.+..++++.++...|+.++++||+++.|+.++|+
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042687 168 TILLDIYHIISKKALAA 184 (217)
Q Consensus 168 ~l~~~~~~~~~~~~~~~ 184 (217)
.|..+.++..++.+...
T Consensus 169 ~Lt~~MiE~~s~~qr~~ 185 (218)
T KOG0088|consen 169 SLTAKMIEHSSQRQRTR 185 (218)
T ss_pred HHHHHHHHHhhhccccc
Confidence 99998887765544333
No 23
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=218.82 Aligned_cols=164 Identities=34% Similarity=0.566 Sum_probs=145.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..+||+|+|.+|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999998877778776555 5667788888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|.+|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999999887654 3478999999999997666667777888888888999999999999999999999
Q ss_pred HHHHHH
Q 042687 170 LLDIYH 175 (217)
Q Consensus 170 ~~~~~~ 175 (217)
++.+.+
T Consensus 163 ~~~l~~ 168 (189)
T PTZ00369 163 VREIRK 168 (189)
T ss_pred HHHHHH
Confidence 988754
No 24
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=4.1e-35 Score=220.17 Aligned_cols=171 Identities=51% Similarity=0.869 Sum_probs=154.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..++..+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999888888888888887778888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
+|||++++++++.+..|+..+........|+++++||+|+...+.+..++...++..++++++++||+++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988877665689999999999998767778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 170 LLDIYHIISKK 180 (217)
Q Consensus 170 ~~~~~~~~~~~ 180 (217)
++.+++.....
T Consensus 164 ~~~~~~~~~~~ 174 (210)
T PLN03108 164 AAKIYKKIQDG 174 (210)
T ss_pred HHHHHHHhhhc
Confidence 99887665433
No 25
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.7e-35 Score=222.50 Aligned_cols=165 Identities=25% Similarity=0.441 Sum_probs=148.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...+||+++|..|||||+|+++|..+.|...+.+|.+..+. ..+.+++..+.+.||||+|++.|..+...+++++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 46689999999999999999999999999888899876654 45788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEec
Q 042687 90 LVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNH------------LRAVAAEDAQILAEKEGL-SFLETS 155 (217)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~vS 155 (217)
+|||++++++|+.+ ..|+..+....+ +.|++||+||+|+.. .+.+..++++.++...++ .|++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 99999999999984 899999987664 789999999999864 256788899999999998 699999
Q ss_pred CCCCC-CHHHHHHHHHHHHHHH
Q 042687 156 ALEAL-NVEKAFQTILLDIYHI 176 (217)
Q Consensus 156 a~~~~-gv~~~~~~l~~~~~~~ 176 (217)
|++|. |++++|..++..+++.
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHh
Confidence 99997 8999999999988764
No 26
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.7e-35 Score=219.43 Aligned_cols=163 Identities=47% Similarity=0.829 Sum_probs=146.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCcccc-CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
+||+|+|++|||||||+++|.++.+.. .+.+|.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999998864 5667777777777788888899999999999999998899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
||++++++++.+..|+..+......++|+++|+||+|+...+.+...+...++..++++++++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998877668999999999999766666777888888889999999999999999999999998
Q ss_pred HHHH
Q 042687 172 DIYH 175 (217)
Q Consensus 172 ~~~~ 175 (217)
.+.+
T Consensus 161 ~~~~ 164 (191)
T cd04112 161 ELKH 164 (191)
T ss_pred HHHH
Confidence 8754
No 27
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2e-35 Score=216.68 Aligned_cols=163 Identities=27% Similarity=0.521 Sum_probs=146.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...+||+++|..|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999999888888887555 456778999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEec
Q 042687 90 LVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNH------------LRAVAAEDAQILAEKEGL-SFLETS 155 (217)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~vS 155 (217)
+|||++++++++.+ ..|+..+....+ +.|++||+||+|+.+ .+.+..+++.++++..++ +|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 899999988765 799999999999854 245788999999999996 999999
Q ss_pred CCCCCC-HHHHHHHHHHHHH
Q 042687 156 ALEALN-VEKAFQTILLDIY 174 (217)
Q Consensus 156 a~~~~g-v~~~~~~l~~~~~ 174 (217)
|++|.| ++++|..+++..+
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999988543
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=3.6e-35 Score=213.20 Aligned_cols=165 Identities=52% Similarity=0.910 Sum_probs=151.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
+.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 56999999999999999999999999988888888888877788888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
|||+++++++..+..|+..+......+.|+++|+||+|+.+.+....++...++...+.+++++||++|.|++++|+++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999877666899999999999987666777788888988899999999999999999999999
Q ss_pred HHHHH
Q 042687 171 LDIYH 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
+.+..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 98754
No 29
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2.1e-35 Score=215.34 Aligned_cols=159 Identities=32% Similarity=0.573 Sum_probs=143.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|.+|||||||+.+|..+.|...+.+|.+..+ ...+.+++..+++.+|||+|++.|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888889987655 455678889999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCcccc----------ccCHHHHHHHHHHcCC-eEEEecCCCCC
Q 042687 93 DITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHLR----------AVAAEDAQILAEKEGL-SFLETSALEAL 160 (217)
Q Consensus 93 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~vSa~~~~ 160 (217)
|++++++|+.+ ..|+..+....+ ++|++||+||+|+.+.+ .+..+++..++...++ ++++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 789999877654 79999999999996532 4778899999999998 69999999999
Q ss_pred CHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDI 173 (217)
Q Consensus 161 gv~~~~~~l~~~~ 173 (217)
|++++|..+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
No 30
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=206.58 Aligned_cols=177 Identities=44% Similarity=0.800 Sum_probs=162.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEE-CCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
..+-++++++|++-+|||+|++.|..++++.-.+||.+.++....+.+ .+..+++++|||+|+++|+++.+.|+++.-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 346799999999999999999999999999999999999998877766 6888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
+++|||+++++||+.++.|+.+...+.. ..+.+++|++|+|+...+++..+|+++++..+|..++++||++|.|+++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999998766653 44556789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042687 166 FQTILLDIYHIISKKALAAQ 185 (217)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~ 185 (217)
|..|.+.+.....+...+..
T Consensus 165 F~mlaqeIf~~i~qGeik~e 184 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLE 184 (213)
T ss_pred HHHHHHHHHHHHhcCceeee
Confidence 99999999999888765544
No 31
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=6.8e-35 Score=210.50 Aligned_cols=160 Identities=43% Similarity=0.772 Sum_probs=147.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||+++|.++.+.+.+.+|.+.++....+.+++..+.+.+||++|++.+..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888887778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
|++++++++.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887766679999999999998777777889999999999999999999999999999999864
No 32
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=6.8e-35 Score=212.61 Aligned_cols=164 Identities=28% Similarity=0.485 Sum_probs=146.4
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.+||+|+|.+|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..++..+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999999878888876444 44567888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998888877653 35799999999999977777888889999999999999999999999999999999
Q ss_pred HHHHHH
Q 042687 171 LDIYHI 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
+.+.+.
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 887653
No 33
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=5.7e-35 Score=220.31 Aligned_cols=164 Identities=32% Similarity=0.575 Sum_probs=148.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECC-eEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG-KTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
+||+++|.+|||||||+++|.++.+...+.+|.+.++....+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888889988888777777754 578999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHAD---SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999877643 35789999999999876777788889999999999999999999999999999
Q ss_pred HHHHHHHH
Q 042687 169 ILLDIYHI 176 (217)
Q Consensus 169 l~~~~~~~ 176 (217)
|++.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99987654
No 34
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.9e-35 Score=213.07 Aligned_cols=161 Identities=25% Similarity=0.498 Sum_probs=143.8
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.+||+++|+.|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999888888876655 45677889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEecCC
Q 042687 92 YDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNH------------LRAVAAEDAQILAEKEGL-SFLETSAL 157 (217)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~vSa~ 157 (217)
||++++++++.+ ..|+..+....+ +.|+++|+||+|+.+ .+.+..+++.+++...++ +++++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 899999988765 799999999999854 235778899999999997 89999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 042687 158 EALN-VEKAFQTILLDIY 174 (217)
Q Consensus 158 ~~~g-v~~~~~~l~~~~~ 174 (217)
+|.+ ++++|..+++..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998543
No 35
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2e-34 Score=209.07 Aligned_cols=163 Identities=52% Similarity=0.860 Sum_probs=149.0
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999998887788888788778888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
||+++++++..+..|+..+......+.|+++++||+|+...+.+..+++..++...+++++++||++|.|++++|.+|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999988776557999999999999776777778888999999999999999999999999999998
Q ss_pred HHH
Q 042687 172 DIY 174 (217)
Q Consensus 172 ~~~ 174 (217)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 774
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.2e-34 Score=208.70 Aligned_cols=162 Identities=42% Similarity=0.754 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||+++|.++.+...+.+|.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887777777777888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
|++++++++.+..|+..+........|+++|+||+|+.+.+....++...++...+++++++||++|.|++++|++|.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877765679999999999997766667778888888889999999999999999999999886
Q ss_pred HH
Q 042687 173 IY 174 (217)
Q Consensus 173 ~~ 174 (217)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 54
No 37
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.4e-34 Score=211.26 Aligned_cols=167 Identities=43% Similarity=0.753 Sum_probs=148.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC----------CeEEEEEEEecCChhhhccchh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE----------GKTVKAQIWDTAGQERYRAITS 79 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~ 79 (217)
++.+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+. +..+.+.+||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999988888888877776666554 4568899999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCC
Q 042687 80 AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALE 158 (217)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 158 (217)
.+++++|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999987654 34789999999999987677777889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~~~~ 176 (217)
|.|++++|++|++.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887653
No 38
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.5e-34 Score=214.17 Aligned_cols=161 Identities=29% Similarity=0.520 Sum_probs=141.7
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.+||+++|..|||||||+.+|..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|+.++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 38999999999999999999999999888888887554 44567888999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCcccc------------ccCHHHHHHHHHHcC-CeEEEecCC
Q 042687 92 YDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLR------------AVAAEDAQILAEKEG-LSFLETSAL 157 (217)
Q Consensus 92 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~vSa~ 157 (217)
||++++++++.+. .|+..+..... ++|++||+||.|+.+.+ .+..+++..++...+ ++++++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 68887776554 79999999999996532 355678889999888 599999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 042687 158 EALNVEKAFQTILLDIY 174 (217)
Q Consensus 158 ~~~gv~~~~~~l~~~~~ 174 (217)
+|.|++++|.+|++.+.
T Consensus 161 ~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 161 NQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998773
No 39
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.5e-34 Score=207.64 Aligned_cols=161 Identities=37% Similarity=0.725 Sum_probs=153.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
||+++|+.+||||||+++|.++.+...+.+|.+.+.....+.+++..+.+.+||++|++.+..+...++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999899998889999999999999999999999999999988999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 94 ITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
++++++++.+..|+..+....+...|++|++||.|+.+.+.+..++++.++..++++++++||+++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998876799999999999988888899999999999999999999999999999999999987
Q ss_pred H
Q 042687 174 Y 174 (217)
Q Consensus 174 ~ 174 (217)
+
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 40
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.3e-34 Score=208.73 Aligned_cols=162 Identities=35% Similarity=0.702 Sum_probs=147.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+++|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899888888888888899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-----CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHAD-----SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
|++++++++.+..|+..+..... .+.|+++|+||+|+.+.+....++...++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999877653 4799999999999976566677788888888899999999999999999999
Q ss_pred HHHHHHH
Q 042687 168 TILLDIY 174 (217)
Q Consensus 168 ~l~~~~~ 174 (217)
+|++.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998774
No 41
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=5.8e-34 Score=207.04 Aligned_cols=166 Identities=53% Similarity=0.896 Sum_probs=150.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
++.+||+|+|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..+...+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999988888888888887888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
+|||+++++++..+..|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||+++.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887765689999999999998666677788888898899999999999999999999999
Q ss_pred HHHHHH
Q 042687 170 LLDIYH 175 (217)
Q Consensus 170 ~~~~~~ 175 (217)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 987754
No 42
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=5e-34 Score=206.75 Aligned_cols=163 Identities=80% Similarity=1.222 Sum_probs=149.4
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..+||+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
|||++++.++..+..|+..+......++|+++|+||+|+...+....++...++...+++++++||++|.|++++|++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887766799999999999987677777788888888889999999999999999999998
Q ss_pred HHH
Q 042687 171 LDI 173 (217)
Q Consensus 171 ~~~ 173 (217)
+.+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 43
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=3.4e-34 Score=210.51 Aligned_cols=162 Identities=26% Similarity=0.533 Sum_probs=143.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|..|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999988888788889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc-----ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH-----LRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
|++++++++.+..|+..+........| ++|+||+|+.. .......+...++...+++++++||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998876655667 57899999842 111223567788888899999999999999999999
Q ss_pred HHHHHHHH
Q 042687 168 TILLDIYH 175 (217)
Q Consensus 168 ~l~~~~~~ 175 (217)
++.+.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988764
No 44
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.5e-34 Score=211.12 Aligned_cols=164 Identities=32% Similarity=0.533 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC-CeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
+||+|+|++|||||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||||++.+..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999987887777665543 34454 7788999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccc----cccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHH
Q 042687 92 YDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHL----RAVAAEDAQILAEKEGL-SFLETSALEALNVEKA 165 (217)
Q Consensus 92 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~~ 165 (217)
||++++++++.+. .|+..+.... .+.|+++|+||.|+... +.+...++.+++...++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999985 5888776554 37999999999998543 24567788889999988 9999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 166 FQTILLDIYHIIS 178 (217)
Q Consensus 166 ~~~l~~~~~~~~~ 178 (217)
|..+++.+.....
T Consensus 159 f~~l~~~~~~~~~ 171 (187)
T cd04132 159 FDTAIEEALKKEG 171 (187)
T ss_pred HHHHHHHHHhhhh
Confidence 9999998875433
No 45
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=5.8e-34 Score=215.04 Aligned_cols=164 Identities=33% Similarity=0.555 Sum_probs=146.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...+||+++|.+|||||||++++..+.+...+.+|.+.++....+..++..+.+.+||++|++.+..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 57799999999999999999999999998888899888888878878888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
+|||++++++++.+..|+..+..... +.|+++|+||+|+.. +.+...++ .++...+++++++||++|.|++++|.||
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 99999999999999999999987654 799999999999864 33344444 6777788999999999999999999999
Q ss_pred HHHHHHH
Q 042687 170 LLDIYHI 176 (217)
Q Consensus 170 ~~~~~~~ 176 (217)
++.+.+.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9988654
No 46
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=9.6e-34 Score=206.16 Aligned_cols=163 Identities=32% Similarity=0.620 Sum_probs=144.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
||+++|.+|||||||+++|.++.+...+.+|.+.++....+.+++..+.+++||+||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988898998888877888888989999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccc--cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 94 ITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRA--VAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
+++++++..+..|+..+... .+...|+++|+||+|+..... ....+...++..++.+++++||++|.|++++|..|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999987654 344678999999999865333 235566778888889999999999999999999999
Q ss_pred HHHHHH
Q 042687 171 LDIYHI 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
+.+.+.
T Consensus 162 ~~~~~~ 167 (170)
T cd04108 162 ALTFEL 167 (170)
T ss_pred HHHHHc
Confidence 988654
No 47
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=5.8e-34 Score=214.21 Aligned_cols=162 Identities=23% Similarity=0.477 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+|+|..|||||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998888899876654 56788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEecCCC
Q 042687 93 DITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEGL-SFLETSALE 158 (217)
Q Consensus 93 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~vSa~~ 158 (217)
|++++++++.+ ..|...+....+ +.|++||+||+|+... ..+..++...+++..++ +|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~-~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCP-NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999998 568777665554 7999999999998542 13567789999999995 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHH
Q 042687 159 ALN-VEKAFQTILLDIYHI 176 (217)
Q Consensus 159 ~~g-v~~~~~~l~~~~~~~ 176 (217)
+.+ ++++|..++...+..
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 884 999999999977554
No 48
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-33 Score=204.94 Aligned_cols=162 Identities=51% Similarity=0.868 Sum_probs=146.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
+.+||+|+|++|||||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999998887777887777777788888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~~~~~l 169 (217)
|||++++++++.+..|+..+......++|+++|+||+|+...+.....++..+++..+. .++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876666899999999999987667777788888888875 78999999999999999999
Q ss_pred HHH
Q 042687 170 LLD 172 (217)
Q Consensus 170 ~~~ 172 (217)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 865
No 49
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.8e-33 Score=208.91 Aligned_cols=163 Identities=34% Similarity=0.628 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCcccc-CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
+||+|+|.+|||||||+++|.++.+.. .+.+|.+.++....+.+++..+.+.+||++|++.+..++..++.++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998874 5777877777777888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccc----cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL----RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
||++++.+++.+..|+..+..... +.|+++|+||+|+... +.+...++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999998877643 7999999999998532 34445677788888889999999999999999999
Q ss_pred HHHHHHHHH
Q 042687 168 TILLDIYHI 176 (217)
Q Consensus 168 ~l~~~~~~~ 176 (217)
+|.+.+.+.
T Consensus 160 ~i~~~~~~~ 168 (193)
T cd04118 160 KVAEDFVSR 168 (193)
T ss_pred HHHHHHHHh
Confidence 999888643
No 50
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=8.1e-34 Score=207.44 Aligned_cols=159 Identities=27% Similarity=0.489 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|..|||||||+++|..+.+...+.+|.+..+. ..+.+++..+++.+||++|++.+..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888888776553 45677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeEEEecCCC
Q 042687 93 DITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEG-LSFLETSALE 158 (217)
Q Consensus 93 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~vSa~~ 158 (217)
|++++++++.+. .|+..+....+ ++|++||+||+|+.+. +.+..+++..+++..+ +.++++||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999996 69888876654 7999999999998543 4566778888888887 6999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDI 173 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~ 173 (217)
|.|++++|+.++...
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998753
No 51
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.3e-33 Score=204.06 Aligned_cols=160 Identities=32% Similarity=0.569 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|.+|||||||++++..+.+...+.+|.+ +.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777765 444566778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998887654 347999999999999765666667777888888899999999999999999999987
Q ss_pred HH
Q 042687 172 DI 173 (217)
Q Consensus 172 ~~ 173 (217)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 52
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.9e-33 Score=202.92 Aligned_cols=160 Identities=53% Similarity=0.863 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888887887788888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
|+++++++..+..|+..+......++|+++++||.|+...+.+..+++..++...+++++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877766689999999999998767777888899999999999999999999999999999874
No 53
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.2e-33 Score=207.69 Aligned_cols=159 Identities=28% Similarity=0.518 Sum_probs=137.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
||+|+|++|||||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||++|++.+..++..++..+|++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 8999999999999999999999998888888765543 455678888899999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCcccc------------ccCHHHHHHHHHHcC-CeEEEecCCCC
Q 042687 94 ITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLR------------AVAAEDAQILAEKEG-LSFLETSALEA 159 (217)
Q Consensus 94 ~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~vSa~~~ 159 (217)
++++++++.+. .|+..+..... +.|+++|+||+|+.+.+ .+..++...++...+ ++++++||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 99999999985 69888877654 79999999999996533 234556777787776 78999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLDIY 174 (217)
Q Consensus 160 ~gv~~~~~~l~~~~~ 174 (217)
.|++++|.+|++.+.
T Consensus 160 ~~v~e~f~~l~~~~~ 174 (189)
T cd04134 160 RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998775
No 54
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.5e-33 Score=210.54 Aligned_cols=169 Identities=46% Similarity=0.810 Sum_probs=150.6
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEE-CCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
.+||+|+|++|||||||+++|.++.+...+.+|.+.++....+.+ ++..+.+++||++|++.+..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999999988888888888887777776 4677899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
|||++++++++.+..|+..+..... ...|++||+||+|+...+.+..++...+++.++++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999876543 467889999999998767777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 170 LLDIYHIISKK 180 (217)
Q Consensus 170 ~~~~~~~~~~~ 180 (217)
++.+.+.....
T Consensus 162 ~~~~~~~~~~~ 172 (211)
T cd04111 162 TQEIYERIKRG 172 (211)
T ss_pred HHHHHHHhhcC
Confidence 99887775433
No 55
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.8e-33 Score=203.67 Aligned_cols=160 Identities=33% Similarity=0.569 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|.+|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6999999999999999999999888777777766544 456778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.....+...+...++...+++++++||++|.|++++|.+|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999999887653 357999999999999776666667778888888999999999999999999999987
Q ss_pred HH
Q 042687 172 DI 173 (217)
Q Consensus 172 ~~ 173 (217)
.+
T Consensus 161 ~l 162 (164)
T cd04175 161 QI 162 (164)
T ss_pred Hh
Confidence 65
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.4e-33 Score=202.48 Aligned_cols=159 Identities=33% Similarity=0.644 Sum_probs=143.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC--CeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE--GKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
+||+++|.+|+|||||+++|.++.+...+.+|.+.++....+.+. +..+.+.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999888888888877766667776 778899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
|||++++++++.+..|+..+..... ++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999998876554 899999999999977667777888899999999999999999999999999997
Q ss_pred HH
Q 042687 171 LD 172 (217)
Q Consensus 171 ~~ 172 (217)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 57
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=5.3e-33 Score=200.95 Aligned_cols=163 Identities=62% Similarity=1.004 Sum_probs=148.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788888887888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
|++++.+++.+..|+..+......++|+++++||+|+...+....+++..++...+++++++|+.++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887765689999999999987766667778888888889999999999999999999999988
Q ss_pred HHH
Q 042687 173 IYH 175 (217)
Q Consensus 173 ~~~ 175 (217)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 58
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-35 Score=200.71 Aligned_cols=178 Identities=42% Similarity=0.723 Sum_probs=162.1
Q ss_pred CCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC---------CeEEEEEEEecCChhhh
Q 042687 4 KVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE---------GKTVKAQIWDTAGQERY 74 (217)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~ 74 (217)
|.+..+++.+|.+.+|.+|||||+|+.++..+.|......|+++++..+.+-++ +..+.+++|||+|+++|
T Consensus 1 m~~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF 80 (219)
T KOG0081|consen 1 MGDGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF 80 (219)
T ss_pred CCCccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH
Confidence 345677889999999999999999999999999999999999999998887663 35688999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEE
Q 042687 75 RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLE 153 (217)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (217)
+++...++++|=+++++||+++.+||-.+..|+..+..+. ..+.-+++++||+|+++.+.++++++..++.++++|||+
T Consensus 81 RSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 81 RSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred HHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 9999999999999999999999999999999999987765 346668999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLDIYHIISKKA 181 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~~~~~~~~~~ 181 (217)
+||-+|.|+++..+.|+..++++..+-.
T Consensus 161 TSA~tg~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988776544
No 59
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=6.3e-33 Score=201.16 Aligned_cols=160 Identities=34% Similarity=0.614 Sum_probs=141.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||++++..+.+...+.+|.+.+.....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998888788888887777777777888899999999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
|++++++++.+..|+..+..... ++|+++|+||+|+.. +... .+...++...+++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999988776 899999999999873 3333 34456677778899999999999999999999988
Q ss_pred HHH
Q 042687 173 IYH 175 (217)
Q Consensus 173 ~~~ 175 (217)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 754
No 60
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=4.8e-33 Score=201.15 Aligned_cols=160 Identities=29% Similarity=0.529 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|.+|||||||++++..+.+...+.+|.+ +.....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999998877777754 455567778888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
|++++++++.+..|+..+.... ..++|+++|+||+|+...+.+...+...++...+++++++||+++.|++++|.++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999988887654 257999999999999765666666778888888899999999999999999999987
Q ss_pred HH
Q 042687 172 DI 173 (217)
Q Consensus 172 ~~ 173 (217)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 61
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=9.6e-33 Score=200.98 Aligned_cols=162 Identities=40% Similarity=0.710 Sum_probs=144.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46799999999999999999999999988877788887777777888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc----CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEecCCCCCCHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHA----DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEK 164 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~ 164 (217)
+|||++++++++.+..|+..+.... ..++|+++|+||+|+. .+.+...++.+++...+ .+++++||++|.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 9999999999999999998876644 2468999999999986 35666778889988887 4899999999999999
Q ss_pred HHHHHHHH
Q 042687 165 AFQTILLD 172 (217)
Q Consensus 165 ~~~~l~~~ 172 (217)
+|+++++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999864
No 62
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=6.7e-33 Score=200.89 Aligned_cols=159 Identities=28% Similarity=0.436 Sum_probs=138.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|.+|||||||++++.++.+...+.++.+..+ ...+..+...+.+.+||++|++.+..++..++..+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998777777765433 445566777889999999999999998889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHAD---SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
|++++++++.+..|+..+..... .++|+++|+||+|+...+.+...++..++...+++++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887766532 479999999999997766677777888888888999999999999999999999
Q ss_pred HHH
Q 042687 170 LLD 172 (217)
Q Consensus 170 ~~~ 172 (217)
+++
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 763
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=7.8e-33 Score=202.06 Aligned_cols=158 Identities=30% Similarity=0.513 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+|+|.+|||||||+.++..+.+...+.+|.+ +.....+.+++..+++.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999999888888875 343456678888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEecCCC
Q 042687 93 DITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEGL-SFLETSALE 158 (217)
Q Consensus 93 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~vSa~~ 158 (217)
|++++++++.+. .|+..+....+ +.|+++|+||+|+.+. +.+..+++..++..++. +++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999995 68888876654 7999999999999542 24667888899998984 999999999
Q ss_pred CCCHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLD 172 (217)
Q Consensus 159 ~~gv~~~~~~l~~~ 172 (217)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998763
No 64
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-33 Score=186.70 Aligned_cols=181 Identities=49% Similarity=0.839 Sum_probs=168.8
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCc
Q 042687 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (217)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (217)
-.+.+.+|-+|+|.-|+|||.|++.|...+|-.+...|.+.++....+.+.+..++++||||+|+++|+...+.|++.+-
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 34667899999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
+.++|||++.+..+..+..|+...+.....+..+++++||.|++..+.+..++++.|+.+.|+.++++||++|.++++.|
T Consensus 86 galmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred ceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence 99999999999999999999999998888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 042687 167 QTILLDIYHIISKKALAAQEA 187 (217)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~ 187 (217)
-....++++..+..-+.+.-.
T Consensus 166 le~akkiyqniqdgsldlnaa 186 (215)
T KOG0097|consen 166 LETAKKIYQNIQDGSLDLNAA 186 (215)
T ss_pred HHHHHHHHHhhhcCcccccch
Confidence 999999988877666555443
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.4e-32 Score=198.51 Aligned_cols=159 Identities=35% Similarity=0.587 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|.+|||||||+++|.++.+.+.+.++.+.+.......+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988777777666666666778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
|++++.+++.+..|+..+..... +.|+++|+||+|+... ...+...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999876544 7999999999998532 1234556677778999999999999999999999987
Q ss_pred HHH
Q 042687 173 IYH 175 (217)
Q Consensus 173 ~~~ 175 (217)
+.+
T Consensus 157 ~~~ 159 (161)
T cd04124 157 AVS 159 (161)
T ss_pred HHh
Confidence 765
No 66
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.3e-32 Score=199.10 Aligned_cols=161 Identities=35% Similarity=0.603 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+|+|++|||||||+++|.+..+...+.++.+. .....+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999999887777777653 33556677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
|++++++++.+..|+..+.... ..+.|+++|+||+|+...+....++...++...+++++++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999988876654 347899999999999776666677788888888999999999999999999999988
Q ss_pred HHH
Q 042687 172 DIY 174 (217)
Q Consensus 172 ~~~ 174 (217)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 653
No 67
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.9e-32 Score=197.58 Aligned_cols=160 Identities=41% Similarity=0.748 Sum_probs=144.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
|++++++++.+..|+..+......+.|+++++||+|+...+.....+...++...+++++++||+++.|++++|.+|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876655579999999999996656667777888888889999999999999999999999874
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2.1e-32 Score=197.86 Aligned_cols=161 Identities=35% Similarity=0.586 Sum_probs=140.5
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.+||+++|++|||||||++++.+..+...+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4899999999999999999999988877776776533 345566888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
||++++.+++.+..|+..+.... ..+.|+++++||+|+...+.+...+...++...+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998877653 34789999999999977666666778888888889999999999999999999998
Q ss_pred HHH
Q 042687 171 LDI 173 (217)
Q Consensus 171 ~~~ 173 (217)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 69
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=6e-32 Score=203.34 Aligned_cols=167 Identities=47% Similarity=0.772 Sum_probs=143.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
....+||+|+|++|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34568999999999999999999999877 45567777777777778888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHH-HHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 042687 89 LLVYDITKRQTFDNVTR-WLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
|+|||++++++++.+.. |...+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999865 655554433 2468999999999997766677777888888889999999999999999999
Q ss_pred HHHHHHHHHH
Q 042687 167 QTILLDIYHI 176 (217)
Q Consensus 167 ~~l~~~~~~~ 176 (217)
++|.+.+.+.
T Consensus 170 ~~l~~~~~~~ 179 (211)
T PLN03118 170 EELALKIMEV 179 (211)
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 70
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=3.9e-32 Score=196.30 Aligned_cols=161 Identities=48% Similarity=0.833 Sum_probs=146.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||+++|.++.+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999987777788787787888889999999999999999999988999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
|+++++++..+..|+..+.......+|+++++||+|+...+.....+...++...+++++++||++|.|++++|++|++.
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999888776689999999999987656667778888888889999999999999999999999886
Q ss_pred H
Q 042687 173 I 173 (217)
Q Consensus 173 ~ 173 (217)
+
T Consensus 162 l 162 (163)
T cd01860 162 L 162 (163)
T ss_pred h
Confidence 5
No 71
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.7e-32 Score=196.70 Aligned_cols=159 Identities=33% Similarity=0.598 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 7999999999999999999999988777777765443 555677888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ +.....+...++...+++++++||++|.|++++|++|++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999998988887664 34789999999999876 455566778888888999999999999999999999987
Q ss_pred HH
Q 042687 172 DI 173 (217)
Q Consensus 172 ~~ 173 (217)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 72
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.4e-32 Score=202.85 Aligned_cols=156 Identities=31% Similarity=0.569 Sum_probs=139.5
Q ss_pred EcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCCh
Q 042687 18 IGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR 97 (217)
Q Consensus 18 ~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (217)
+|..|||||||+++|+.+.+...+.+|.+.++....+.+++..+++.+|||+|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999998888888988888888888888999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 042687 98 QTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 98 ~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~~~~~ 176 (217)
.+++.+..|+..+..... ++|+++|+||+|+.. +.+..++ ..++...+++++++||++|.|++++|.+|++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999988764 899999999999864 3344433 467788889999999999999999999999888553
No 73
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3.9e-32 Score=197.81 Aligned_cols=162 Identities=37% Similarity=0.695 Sum_probs=145.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc-cchhhhhcCCcEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR-AITSAYYRGAVGALL 90 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~ii~ 90 (217)
.+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999999887788888888888888889988999999999999886 568888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCC---CCCHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALE---ALNVEKAF 166 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~---~~gv~~~~ 166 (217)
|||+++++++..+..|+..+.... ..++|+++|+||+|+...+.+...+...++...+++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887654 35799999999999987777777888889988899999999999 89999999
Q ss_pred HHHHHHH
Q 042687 167 QTILLDI 173 (217)
Q Consensus 167 ~~l~~~~ 173 (217)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998755
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.1e-32 Score=202.49 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=136.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc--------chhhhhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA--------ITSAYYRG 84 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 84 (217)
+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+.+++..+.+++|||||.+.+.. .....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888877666666677888889999999999654321 12345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEecCCCCC
Q 042687 85 AVGALLVYDITKRQTFDNVTRWLRELRDHA---DSNIVIMMAGNKSDLNHLRAVAAEDAQILAE-KEGLSFLETSALEAL 160 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~ 160 (217)
+|++|+|||++++++++.+..|+..+.... ..++|+++|+||+|+...+....++...++. ..+++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887654 4579999999999997656566666666654 568999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDIYHI 176 (217)
Q Consensus 161 gv~~~~~~l~~~~~~~ 176 (217)
|++++|+.+++.++..
T Consensus 161 ~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 161 HILLLFKELLISATTR 176 (198)
T ss_pred CHHHHHHHHHHHhhcc
Confidence 9999999999877643
No 75
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=8.5e-32 Score=194.11 Aligned_cols=161 Identities=39% Similarity=0.708 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||+++|.++.+...+.++.+.......+.+.+..+.+.+||+||++.+..++..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777677666666677777788889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
|++++++++.+..|+..+......++|+++++||+|+.....+..++...++...+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998887766689999999999998766667778888888889999999999999999999999876
Q ss_pred H
Q 042687 173 I 173 (217)
Q Consensus 173 ~ 173 (217)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.3e-31 Score=193.89 Aligned_cols=160 Identities=31% Similarity=0.571 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC--ccccCCCCCcceeeEEEEEEEC-CeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN--EFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
+||+++|++|||||||++++..+ .+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5667777888777766666664 56789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+...+...+...+....+++++++||+++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887765 379999999999997666666666777777888999999999999999999999
Q ss_pred HHHH
Q 042687 170 LLDI 173 (217)
Q Consensus 170 ~~~~ 173 (217)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8865
No 77
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=2.9e-31 Score=193.38 Aligned_cols=164 Identities=40% Similarity=0.724 Sum_probs=144.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777788787777778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHAD----SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~~~~ 167 (217)
|++++++++.+..|...+..... .++|+++|+||+|+........++...+....+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999888877655432 379999999999997555566777778888877 7999999999999999999
Q ss_pred HHHHHHHHH
Q 042687 168 TILLDIYHI 176 (217)
Q Consensus 168 ~l~~~~~~~ 176 (217)
++.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988664
No 78
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.1e-31 Score=198.98 Aligned_cols=158 Identities=23% Similarity=0.415 Sum_probs=129.3
Q ss_pred eeEEEEEcCCCCCHHHHHh-HHhcCc-----cccCCCCCcce-eeEEEE--------EEECCeEEEEEEEecCChhhhcc
Q 042687 12 LFKIVLIGDSGVGKSNILS-RFTRNE-----FCLESKSTIGV-EFATRT--------LQVEGKTVKAQIWDTAGQERYRA 76 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~-~l~~~~-----~~~~~~~t~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 76 (217)
.+||+++|..|||||||+. ++.++. +...+.||.+. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3799999999999999995 665543 34556677642 222222 25688899999999999875 2
Q ss_pred chhhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCcc-------------------ccccC
Q 042687 77 ITSAYYRGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNH-------------------LRAVA 136 (217)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~ 136 (217)
....+++++|++|+|||++++.+++.+. .|+..+....+ +.|+++|+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4456889999999999999999999996 69988877654 789999999999864 36778
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 137 AEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
.++++.+++.++++|++|||++|.|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 889999999999999999999999999999998763
No 79
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=1.5e-31 Score=204.76 Aligned_cols=160 Identities=25% Similarity=0.462 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|.+|||||||+++|+++.+...+.+|.+ ++....+.+++..+.+.||||+|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999877777765 555667788898999999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh---------cCCCCeEEEEEeCCCCccccccCHHHHHHHHHH-cCCeEEEecCCCCCCH
Q 042687 93 DITKRQTFDNVTRWLRELRDH---------ADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK-EGLSFLETSALEALNV 162 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~gv 162 (217)
|++++++|+.+..|+..+... ...++|+++|+||+|+...+.+..+++..++.. .+++++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 224799999999999976566777777777653 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 163 EKAFQTILLDI 173 (217)
Q Consensus 163 ~~~~~~l~~~~ 173 (217)
+++|++|++.+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998854
No 80
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.4e-31 Score=195.54 Aligned_cols=158 Identities=30% Similarity=0.552 Sum_probs=137.3
Q ss_pred EEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeC
Q 042687 15 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 94 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 94 (217)
|+|+|++|||||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||||++.+..++..++..+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999999877777765444 45567788889999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCcccc------------ccCHHHHHHHHHHcCC-eEEEecCCCCC
Q 042687 95 TKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLR------------AVAAEDAQILAEKEGL-SFLETSALEAL 160 (217)
Q Consensus 95 ~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~vSa~~~~ 160 (217)
+++++++.+. .|+..+....+ ++|+++|+||+|+.... .+..+++..++...+. +++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 69988877654 89999999999986422 2666778889999986 99999999999
Q ss_pred CHHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDIY 174 (217)
Q Consensus 161 gv~~~~~~l~~~~~ 174 (217)
|++++|+.+++.++
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 81
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=4.6e-31 Score=190.38 Aligned_cols=159 Identities=50% Similarity=0.838 Sum_probs=142.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788887777777778888889999999999999998999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
|++++++++.+..|+..+.... ..+.|+++++||+|+.. .....++...++...+++++++||++|.|++++++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999887765 35899999999999974 445567788888888999999999999999999999987
Q ss_pred H
Q 042687 172 D 172 (217)
Q Consensus 172 ~ 172 (217)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=4.1e-31 Score=192.09 Aligned_cols=161 Identities=31% Similarity=0.540 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|.+|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999999877777776644 3566677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
|++++++++.+..|...+.... ..+.|+++++||.|+...+....++...++..++ ++++++||+++.|++++|+++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988886643 3479999999999997766666777778888887 8999999999999999999998
Q ss_pred HHHH
Q 042687 171 LDIY 174 (217)
Q Consensus 171 ~~~~ 174 (217)
..++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 8664
No 83
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=2e-31 Score=191.54 Aligned_cols=153 Identities=22% Similarity=0.393 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|+.|||||||+.++..+.+...+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999998887665544 3333 46678889889999999999964 34678899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCc--cccccCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLN--HLRAVAAEDAQILAEKE-GLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~~~~~ 168 (217)
|++++++|+.+..|+..+..... .++|+++|+||.|+. ..+.+..++++++++.. ++.+++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999887653 578999999999985 35677788888898776 489999999999999999999
Q ss_pred HHHH
Q 042687 169 ILLD 172 (217)
Q Consensus 169 l~~~ 172 (217)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9764
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=1.6e-31 Score=193.67 Aligned_cols=160 Identities=34% Similarity=0.546 Sum_probs=136.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh-hccchhhhhcCCcEEEEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-YRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~ii~v~ 92 (217)
||+|+|++|||||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||++. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999888767666654333 45567888889999999999885 3455677899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCC-CCHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHA--DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEA-LNVEKAFQTI 169 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~-~gv~~~~~~l 169 (217)
|++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||++| .|++++|++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887754 347999999999999766677777888899888999999999999 5999999999
Q ss_pred HHHHH
Q 042687 170 LLDIY 174 (217)
Q Consensus 170 ~~~~~ 174 (217)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98663
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.9e-31 Score=193.93 Aligned_cols=163 Identities=20% Similarity=0.239 Sum_probs=139.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
...+||+++|.+|||||||+++|.++.+. ..+.+|.+.++....+.+++..+.+.+||++|.+.+..++..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999998 78888888777777778888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNVEKAFQ 167 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~~~~ 167 (217)
++|||++++.+++.+..|+..+... .++|+++|+||+|+.+.......+...++..+++ .++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999988888765332 3799999999999965443333456677777777 479999999999999999
Q ss_pred HHHHHHH
Q 042687 168 TILLDIY 174 (217)
Q Consensus 168 ~l~~~~~ 174 (217)
.|.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9988764
No 86
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1e-30 Score=190.03 Aligned_cols=164 Identities=44% Similarity=0.777 Sum_probs=145.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988887777777777777777888888889999999999999998899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
+|||++++++++.+..|+..+......++|+++|+||+|+...+.+.......+......+++++||++|.|++++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999998877766689999999999997666666666677777777899999999999999999999
Q ss_pred HHHH
Q 042687 170 LLDI 173 (217)
Q Consensus 170 ~~~~ 173 (217)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8764
No 87
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=6.3e-31 Score=188.53 Aligned_cols=158 Identities=57% Similarity=0.943 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998887888888888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
|++++++++.+..|+..+......+.|+++++||+|+........++...++...+++++++|++++.|++++|.+|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999998887756899999999999975566667888888888899999999999999999999986
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=6.5e-31 Score=198.71 Aligned_cols=162 Identities=27% Similarity=0.379 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhc-CCcEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR-GAVGALL 90 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~ii~ 90 (217)
+||+++|++|||||||+++|..+.+. ..+.++.+.++....+.+++..+.+.+||++|++. .....++. ++|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 56666665567777788888889999999999982 23345566 9999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999887654 2479999999999997767777777888888889999999999999999999999
Q ss_pred HHHHHHH
Q 042687 170 LLDIYHI 176 (217)
Q Consensus 170 ~~~~~~~ 176 (217)
++.+...
T Consensus 159 ~~~~~~~ 165 (221)
T cd04148 159 VRQIRLR 165 (221)
T ss_pred HHHHHhh
Confidence 9877543
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=6.4e-31 Score=191.95 Aligned_cols=157 Identities=32% Similarity=0.572 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|+|||||++++.++.+...+.+|. .+.....+.+++..+++.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988887777775 4455556778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEEecCCC
Q 042687 93 DITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNH------------LRAVAAEDAQILAEKEGL-SFLETSALE 158 (217)
Q Consensus 93 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~vSa~~ 158 (217)
|++++++++.+ ..|+..+..... +.|+++++||+|+.. .+.+..+++..++...+. +++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNP-KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999998 468888775433 799999999999853 345667788899998887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILL 171 (217)
Q Consensus 159 ~~gv~~~~~~l~~ 171 (217)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=1.7e-30 Score=189.83 Aligned_cols=159 Identities=29% Similarity=0.495 Sum_probs=136.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..++..+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999998777777654 333446678888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEecCCC
Q 042687 93 DITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEGL-SFLETSALE 158 (217)
Q Consensus 93 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~vSa~~ 158 (217)
|++++.+++.+. .|+..+... ..+.|+++|+||+|+.+. +.+..+++..+++..+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999984 688877765 458999999999998542 24566778888888886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDI 173 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~ 173 (217)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 91
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=7.9e-33 Score=184.08 Aligned_cols=160 Identities=44% Similarity=0.760 Sum_probs=149.4
Q ss_pred EEEcCCCCCHHHHHhHHhcCcccc-CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeC
Q 042687 16 VLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 94 (217)
Q Consensus 16 ~i~G~~~~GKstLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 94 (217)
+++|.+++|||.|+-++..+.|.. ....|.++++..+.+..++..+++++|||+|+++|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 378999999999999999888764 4568899999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 95 TKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 95 ~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
.+..||+....|+.++.+.....+.+.+++||+|+..++.+..++.+.++..+++|+.++||++|.|++..|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999988778889999999999888999999999999999999999999999999999999988764
Q ss_pred H
Q 042687 175 H 175 (217)
Q Consensus 175 ~ 175 (217)
+
T Consensus 161 k 161 (192)
T KOG0083|consen 161 K 161 (192)
T ss_pred H
Confidence 4
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=6.9e-30 Score=184.54 Aligned_cols=161 Identities=35% Similarity=0.580 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||++++....+...+.++.... .......++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999988877776665533 3455677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
|++++.++..+..|+..+.... ..++|+++|+||+|+...+.....+...+...++++++++||++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999988888877764 348999999999999764555666777888888999999999999999999999988
Q ss_pred HHH
Q 042687 172 DIY 174 (217)
Q Consensus 172 ~~~ 174 (217)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=7.6e-30 Score=183.55 Aligned_cols=158 Identities=36% Similarity=0.623 Sum_probs=139.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
||+|+|++|||||||++++.+..+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777755 5556667778778899999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 94 ITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
+++++++..+..|+..+..... ..+|+++++||+|+...+....+++..++...+++++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877654 589999999999998766677788888888888999999999999999999999875
No 94
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=4.8e-30 Score=189.17 Aligned_cols=163 Identities=34% Similarity=0.552 Sum_probs=151.2
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.+||+++|.+|||||+|+.+|..+.|.+.|.+|.+ +.+...+.+++..+.+.|+||+|++.+..+...++.++|++++|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 48999999999999999999999999999999987 66678888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
|+++++.||+.+..++..+.+.. ...+|+++|+||+|+...+.+..++...++..++++++++||+.+.+++++|..|+
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~ 161 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV 161 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence 99999999999999999985544 34689999999999999899999999999999999999999999999999999999
Q ss_pred HHHHH
Q 042687 171 LDIYH 175 (217)
Q Consensus 171 ~~~~~ 175 (217)
+.+..
T Consensus 162 r~~~~ 166 (196)
T KOG0395|consen 162 REIRL 166 (196)
T ss_pred HHHHh
Confidence 87744
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.8e-29 Score=184.45 Aligned_cols=159 Identities=28% Similarity=0.521 Sum_probs=133.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
.||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 6899999999999999999999998877777766444 345677888889999999999999888888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEecCCC
Q 042687 93 DITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEGL-SFLETSALE 158 (217)
Q Consensus 93 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~vSa~~ 158 (217)
|++++++++.+. .|+..+..... +.|+++|+||+|+... ..+...+...++...+. +++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999884 68887766543 7999999999998542 12334567777777774 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDI 173 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~ 173 (217)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 96
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.97 E-value=7.1e-32 Score=188.16 Aligned_cols=181 Identities=31% Similarity=0.525 Sum_probs=167.5
Q ss_pred CCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhc
Q 042687 4 KVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR 83 (217)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 83 (217)
|-+++.+..+|++|+|..++||||+|++++.+.|...+..|++.++....+.+.+..+.+.+||++|+++|..+.+.|++
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr 91 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR 91 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 45667888999999999999999999999999999999999999998888888887788899999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 163 (217)
+|.+.++||+-+|+.||+....|++.+....+ .+|.++|-||+|+.+...+...+++.+++.++..++-+|+++..|+.
T Consensus 92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM 170 (246)
T ss_pred cccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence 99999999999999999999999999988877 89999999999999888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYHIISKKALAAQ 185 (217)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~~ 185 (217)
.+|.+|++++.+++.++.....
T Consensus 171 ~vF~YLaeK~~q~~kq~~~~~~ 192 (246)
T KOG4252|consen 171 HVFAYLAEKLTQQKKQSLNANE 192 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhch
Confidence 9999999999988877554433
No 97
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.2e-30 Score=188.79 Aligned_cols=153 Identities=18% Similarity=0.303 Sum_probs=126.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
.|+++|++|||||||+++|.++.+...+.+|.+... ..+++..+++.+||++|++.++.++..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999888777778876543 2344456789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCH----HHHHHHHHHcCCeEEEecCCC------CCCHH
Q 042687 94 ITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAA----EDAQILAEKEGLSFLETSALE------ALNVE 163 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~vSa~~------~~gv~ 163 (217)
++++.++.....|+..+.... .++|+++|+||+|+...+.... .++..++.+.+++++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999988888876544 4899999999999876443321 234556666788999999998 99999
Q ss_pred HHHHHHHH
Q 042687 164 KAFQTILL 171 (217)
Q Consensus 164 ~~~~~l~~ 171 (217)
++|+.+++
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998875
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=7e-30 Score=185.48 Aligned_cols=154 Identities=21% Similarity=0.364 Sum_probs=122.1
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..+||+++|++|||||||+++|..+.+. .+.+|.+.+.. .+.. ..+.+.+||++|++.++.++..++.++|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3489999999999999999999887764 35566665543 2333 34789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQILAE-----KEGLSFLETSALEALNVEK 164 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~~ 164 (217)
|||++++.+++.+..|+..+... ...++|++||+||+|+.+. +..+++..+.. ...++++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 99999999999987777665443 2347899999999998642 34555555442 1235789999999999999
Q ss_pred HHHHHHH
Q 042687 165 AFQTILL 171 (217)
Q Consensus 165 ~~~~l~~ 171 (217)
+|+||.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999964
No 99
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=4.1e-29 Score=183.46 Aligned_cols=162 Identities=35% Similarity=0.552 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
.||+|+|.+|||||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888766666654433 455677777888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
|+++..+++.+..|+..+.+.. ..+.|+++|+||+|+...+.....+...++...+++++++||+++.|+.++|.+|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999988888876653 357899999999999765666666777788888899999999999999999999998
Q ss_pred HHHH
Q 042687 172 DIYH 175 (217)
Q Consensus 172 ~~~~ 175 (217)
.+.+
T Consensus 161 ~~~~ 164 (180)
T cd04137 161 EIEK 164 (180)
T ss_pred HHHH
Confidence 7743
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=3e-29 Score=186.93 Aligned_cols=160 Identities=28% Similarity=0.445 Sum_probs=133.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
||+++|.+|||||||+++|.++.+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776666654 4555667778888899999999999998888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCcc-ccccCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 94 ITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNH-LRAVAAEDAQILAE-KEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
++++.+++.+..|+..+..... .++|+++|+||+|+.. .+.+...+..+... ..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888777653 4799999999999865 34444444444433 4567899999999999999999999
Q ss_pred HHHH
Q 042687 171 LDIY 174 (217)
Q Consensus 171 ~~~~ 174 (217)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8664
No 101
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1e-28 Score=186.33 Aligned_cols=166 Identities=31% Similarity=0.543 Sum_probs=144.3
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCc
Q 042687 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (217)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (217)
......+||+++|++|||||||++++..+.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 44556799999999999999999999998888888899888888888878888899999999999999988999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
++|+|||++++.++..+..|+..+..... ++|+++++||+|+.+ +.... +...++...++.++++|+++|.|+++.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~i~lv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKD-RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCcc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998876654 789999999999864 22332 3345677788999999999999999999
Q ss_pred HHHHHHHHH
Q 042687 167 QTILLDIYH 175 (217)
Q Consensus 167 ~~l~~~~~~ 175 (217)
.+|++.+..
T Consensus 161 ~~ia~~l~~ 169 (215)
T PTZ00132 161 LWLARRLTN 169 (215)
T ss_pred HHHHHHHhh
Confidence 999987754
No 102
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.5e-29 Score=185.75 Aligned_cols=158 Identities=20% Similarity=0.329 Sum_probs=122.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..+||+++|..|||||||+++|..+.+. .+.+|.+.+.. .+.. ..+.+++||+||++.++.+|..+++++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999987774 45677665443 3333 34788999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHHHHHHHc-----CCeEEEecCCCCCCHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKE-----GLSFLETSALEALNVEK 164 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~vSa~~~~gv~~ 164 (217)
|||+++++++..+..++..+... ...++|++|++||+|+.+.. ..++......-. .+.++++||++|.|+++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence 99999999999887777765432 22479999999999987532 333333322111 12466899999999999
Q ss_pred HHHHHHHHHHH
Q 042687 165 AFQTILLDIYH 175 (217)
Q Consensus 165 ~~~~l~~~~~~ 175 (217)
+|+||.+.+.+
T Consensus 169 ~~~~l~~~~~~ 179 (181)
T PLN00223 169 GLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHhh
Confidence 99999887754
No 103
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=2.9e-29 Score=184.73 Aligned_cols=162 Identities=20% Similarity=0.356 Sum_probs=128.5
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEE-CCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
.+||+++|++|||||||++++..+.+... .+|.+.+.....+.. ++..+.+.+|||||++.+..++..+++++|++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999998877543 566665555544443 4466889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHH------HcCCeEEEecCCCCCCHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAE------KEGLSFLETSALEALNVE 163 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~vSa~~~~gv~ 163 (217)
|||++++.++..+..|+..+.... ..+.|+++|+||+|+... ....+...+.. ..+++++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 999999999988888887765543 347999999999998642 33344444432 113568999999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYHI 176 (217)
Q Consensus 164 ~~~~~l~~~~~~~ 176 (217)
++|++|.+.+.+.
T Consensus 160 ~l~~~l~~~l~~~ 172 (183)
T cd04152 160 EGLEKLYEMILKR 172 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888543
No 104
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=6.2e-30 Score=187.00 Aligned_cols=156 Identities=21% Similarity=0.345 Sum_probs=122.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..+||+++|.+|||||||+++|..+.+. .+.+|.+.+.. .+... .+.+.+||+||++.+..++..+++++|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999877763 45677665543 23333 4788999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQILAE-----KEGLSFLETSALEALNVEK 164 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~~ 164 (217)
|||++++++++....|+..+... ...++|++||+||+|+.+.. ..+++..... ...+.++++||++|.|+++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 99999999999988887776543 22478999999999986532 2333332221 2234577899999999999
Q ss_pred HHHHHHHHH
Q 042687 165 AFQTILLDI 173 (217)
Q Consensus 165 ~~~~l~~~~ 173 (217)
+|+||.+.+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999998765
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=3e-29 Score=182.43 Aligned_cols=155 Identities=21% Similarity=0.383 Sum_probs=124.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
||+++|.+|||||||+++|.+..+. .+.+|.+..+. .+..+ .+.+.+||+||++.+...+..++..+|++|+|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999998764 35666654443 33333 4678899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC------CeEEEecCCCCCCHHHHH
Q 042687 94 ITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG------LSFLETSALEALNVEKAF 166 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~vSa~~~~gv~~~~ 166 (217)
+++++++..+..|+..+.... ..+.|++||+||+|+.+ ....+++..++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999988888876543 23689999999999864 344556666553222 368899999999999999
Q ss_pred HHHHHHHHH
Q 042687 167 QTILLDIYH 175 (217)
Q Consensus 167 ~~l~~~~~~ 175 (217)
+||.+.+.+
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999887654
No 106
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=8.7e-29 Score=182.83 Aligned_cols=161 Identities=30% Similarity=0.533 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
.||+|+|+.|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998888766666654443 345667788888999999999888877777889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCcc----------ccccCHHHHHHHHHHcCC-eEEEecCCCCC
Q 042687 93 DITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNH----------LRAVAAEDAQILAEKEGL-SFLETSALEAL 160 (217)
Q Consensus 93 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~ 160 (217)
|++++++++.+. .|+..+....+ .+|+++|+||+|+.. .+.+..++...+++..+. ++|++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999985 69998877655 699999999999843 234445678888888885 89999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDIYH 175 (217)
Q Consensus 161 gv~~~~~~l~~~~~~ 175 (217)
|++++|+++.+.+..
T Consensus 160 ~v~~~f~~l~~~~~~ 174 (187)
T cd04129 160 GVDDVFEAATRAALL 174 (187)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999986633
No 107
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=7.5e-29 Score=180.44 Aligned_cols=157 Identities=32% Similarity=0.577 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||+++|.+..+...+.++.. +.....+..++..+.+++||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999998766666654 334555677888899999999999988888888889999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCcccc-----------ccCHHHHHHHHHHcCC-eEEEecCCCC
Q 042687 93 DITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHLR-----------AVAAEDAQILAEKEGL-SFLETSALEA 159 (217)
Q Consensus 93 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~vSa~~~ 159 (217)
|+++++++... ..|+..+..... +.|+++|+||+|+.... .+...+...++...+. +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 99999998886 567777766554 79999999999986544 2346677788888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q 042687 160 LNVEKAFQTILL 171 (217)
Q Consensus 160 ~gv~~~~~~l~~ 171 (217)
.|++++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 108
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=1.1e-28 Score=183.22 Aligned_cols=149 Identities=23% Similarity=0.421 Sum_probs=127.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC-----CeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-----GKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
+||+++|..|||||||+++|.++.+...+.+|.+.++....+.++ +..+.+.+||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877776666663 567899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-------------------CCCCeEEEEEeCCCCccccccCHH----HHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHA-------------------DSNIVIMMAGNKSDLNHLRAVAAE----DAQILA 144 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~ 144 (217)
+|+|||++++++++.+..|+..+.... ..++|++||+||+|+.+.+.+... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999986632 246899999999999765544443 245678
Q ss_pred HHcCCeEEEecCCCCCC
Q 042687 145 EKEGLSFLETSALEALN 161 (217)
Q Consensus 145 ~~~~~~~~~vSa~~~~g 161 (217)
.+.+++.++.++.+...
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 88999999998886533
No 109
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=9.2e-30 Score=183.29 Aligned_cols=152 Identities=20% Similarity=0.388 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|.+|||||||++++..+.+. .+.+|.+.+.. .+... .+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999888775 45677665443 33333 477899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHH-HHHH----HHcCCeEEEecCCCCCCHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDA-QILA----EKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
|++++.++..+..|+..+... .....|++|++||+|+.+.. ...++ ..+. ....+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877766432 22468999999999986422 22232 2221 1223467899999999999999
Q ss_pred HHHHH
Q 042687 167 QTILL 171 (217)
Q Consensus 167 ~~l~~ 171 (217)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=9.9e-29 Score=181.62 Aligned_cols=160 Identities=21% Similarity=0.354 Sum_probs=122.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..+||+++|++|||||||++++..+.+.. +.+|.+.++. .+.. ..+.+.+||+||++.++.++..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998877754 5567665443 3333 34688999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQILA-----EKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~gv~~ 164 (217)
|||+++++++..+..++..+... ....+|++||+||.|+.+.. ...++.... ....+.++++||++|.|+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999999887777665432 22368999999999986422 222322211 11224577999999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 165 AFQTILLDIYHII 177 (217)
Q Consensus 165 ~~~~l~~~~~~~~ 177 (217)
+|+||.+.+.+.+
T Consensus 169 ~~~~l~~~i~~~~ 181 (182)
T PTZ00133 169 GLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998776543
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2e-28 Score=177.63 Aligned_cols=160 Identities=30% Similarity=0.404 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|..|||||||+++|.++.+...+..+. .. ......+++..+.+.+||+||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998865543332 22 2344456667789999999999888777788889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccccccC--HHHHHHHHHHcC--CeEEEecCCCCCCHHHHHH
Q 042687 93 DITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLRAVA--AEDAQILAEKEG--LSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 93 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~--~~~~~vSa~~~~gv~~~~~ 167 (217)
|++++++++.+. .|+..+..... +.|+++|+||+|+.+..... .++...++...+ .+++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999984 68888877654 89999999999996644321 233334443332 3899999999999999999
Q ss_pred HHHHHHHH
Q 042687 168 TILLDIYH 175 (217)
Q Consensus 168 ~l~~~~~~ 175 (217)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887643
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=1.2e-28 Score=179.83 Aligned_cols=155 Identities=23% Similarity=0.373 Sum_probs=122.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
+..++|+++|++|||||||+++|.+..+ ..+.+|.+. ....+.+++ +.+.+||+||++.++..+..++..+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 3458999999999999999999998754 344556553 333444553 67899999999999889999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQILAE-----KEGLSFLETSALEALNVE 163 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~ 163 (217)
+|||++++.++.....|+..+... ...++|+++|+||+|+.+.. ..+++..+.. ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 999999999999888887776442 23589999999999986532 3445554442 345789999999999999
Q ss_pred HHHHHHHH
Q 042687 164 KAFQTILL 171 (217)
Q Consensus 164 ~~~~~l~~ 171 (217)
++|++|++
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=5.5e-29 Score=179.89 Aligned_cols=164 Identities=32% Similarity=0.536 Sum_probs=148.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC-CeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
..+|++|||..++|||+|+-.+..+.|+..|.||.. +.+...+.++ +..+++.+|||+|++.|..++...+.++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 458999999999999999999999999999999987 5556778885 99999999999999999998888999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeEEEec
Q 042687 90 LVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEG-LSFLETS 155 (217)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~vS 155 (217)
+||++.+++|++++ .+|+.++..+++ ++|+++|++|.||... ..+..++...++++.| ..|+++|
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999997 899999999996 8999999999999632 2466778899999999 5799999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 042687 156 ALEALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 156 a~~~~gv~~~~~~l~~~~~~~ 176 (217)
|+++.|+.++|+..+...+..
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcc
Confidence 999999999999999988654
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=2.4e-28 Score=177.31 Aligned_cols=153 Identities=23% Similarity=0.333 Sum_probs=119.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
.|+++|.+|||||||+++|.+. +...+.+|.+.. ...+..+ .+.+++||+||++.++.++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 556666776644 3344444 3678899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCH----HHHHHHHHHc--CCeEEEecCCCC------C
Q 042687 94 ITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAA----EDAQILAEKE--GLSFLETSALEA------L 160 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~--~~~~~~vSa~~~------~ 160 (217)
++++.+++.+..|+..+.... ..++|+++|+||+|+++.+.... ..+..++... .+.++++||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999998988876543 24799999999999976432111 1122333223 356888999998 8
Q ss_pred CHHHHHHHHHH
Q 042687 161 NVEKAFQTILL 171 (217)
Q Consensus 161 gv~~~~~~l~~ 171 (217)
|+++.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=1.3e-27 Score=174.54 Aligned_cols=153 Identities=23% Similarity=0.378 Sum_probs=119.4
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.++|+++|++|||||||++++..+.+.. +.+|.+.+.. .+..+ .+.+.+||+||++.+...+..++..+|++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999887754 4566554443 33344 46788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHH-HHH----HHcCCeEEEecCCCCCCHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQ-ILA----EKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~vSa~~~~gv~~~ 165 (217)
||+++++++.....++..+.... ..++|+++++||+|+... ...++.. .+. ...+++++++||++|.|++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 99999998888777666654432 246999999999998652 2233322 221 234567999999999999999
Q ss_pred HHHHHH
Q 042687 166 FQTILL 171 (217)
Q Consensus 166 ~~~l~~ 171 (217)
|+||.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999964
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=7.9e-28 Score=173.55 Aligned_cols=152 Identities=21% Similarity=0.340 Sum_probs=117.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcc-ccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+|+++|++|||||||+++|.+..+ ...+.+|.+.... .+.. ..+.+.+||+||++.+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998763 4455666664332 2232 3467889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHA---DSNIVIMMAGNKSDLNHLRAVAAEDAQILAE-----KEGLSFLETSALEALNVEK 164 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~~ 164 (217)
|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ...+...... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999888888887765532 2479999999999986532 1222222211 1234689999999999999
Q ss_pred HHHHHHH
Q 042687 165 AFQTILL 171 (217)
Q Consensus 165 ~~~~l~~ 171 (217)
+|+||.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=1.4e-27 Score=171.94 Aligned_cols=152 Identities=23% Similarity=0.410 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
+|+++|++|||||||+++|.+..+.. ..+|.+.+. ..+... ..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999988753 345555443 233333 34689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHH------HHHHcCCeEEEecCCCCCCHHHHH
Q 042687 94 ITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQI------LAEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
++++.++.....|+..+.... ..+.|+++|+||+|+.... ...++.. +....+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999998888888777765432 2479999999999986421 1222221 122234579999999999999999
Q ss_pred HHHHH
Q 042687 167 QTILL 171 (217)
Q Consensus 167 ~~l~~ 171 (217)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 118
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=4.8e-27 Score=171.53 Aligned_cols=157 Identities=27% Similarity=0.475 Sum_probs=125.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+++|..|||||||++++..+.... ..||.+ +....+.+++ +.+.+||.+|+..++..|+.++.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 567999999999999999999998766533 556655 4444555665 56789999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHHHHHH------HcCCeEEEecCCCCCCH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQILAE------KEGLSFLETSALEALNV 162 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~vSa~~~~gv 162 (217)
||+|.++++.+......+..+... ...++|++|++||.|+.+ ....+++..... ...+.++.+||.+|.|+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 999999998888887777776553 235899999999999875 233445544332 23456999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 163 EKAFQTILLDI 173 (217)
Q Consensus 163 ~~~~~~l~~~~ 173 (217)
.+.++||.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999998864
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=3.9e-27 Score=174.41 Aligned_cols=155 Identities=20% Similarity=0.314 Sum_probs=122.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..++|+++|++|||||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999988764 455555433 33445554 567899999999998889999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHH----------------cCCeEEE
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK----------------EGLSFLE 153 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~ 153 (217)
|+|+++.+++.....|+..+.... ..+.|+++++||+|+.. .+..+++...... ..+++++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 999999988888877777765533 34799999999999864 3445555555432 2246899
Q ss_pred ecCCCCCCHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLD 172 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~ 172 (217)
+||++|.|++++|+||.+.
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999999874
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=4.4e-27 Score=170.54 Aligned_cols=152 Identities=22% Similarity=0.383 Sum_probs=116.8
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcc------ccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEF------CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
+|+|+|++|||||||+++|.+... ...+.+|.+.+. ..+.++ ...+.+||+||++.+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 122334544444 334444 3578899999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHH-------cCCeEEEecCCCC
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK-------EGLSFLETSALEA 159 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~vSa~~~ 159 (217)
+++|+|+++++++.....|+..+.... ..++|+++++||+|+... ....+...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988888888877765542 347999999999998653 233444443322 2468999999999
Q ss_pred CCHHHHHHHHHH
Q 042687 160 LNVEKAFQTILL 171 (217)
Q Consensus 160 ~gv~~~~~~l~~ 171 (217)
.|++++++||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999965
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.1e-27 Score=170.81 Aligned_cols=151 Identities=24% Similarity=0.402 Sum_probs=113.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
||+++|+++||||||+++|..+.+. .+.+|.+.+.. .+.. ..+.+++||+||++.+..++..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999887764 34455554433 2333 34678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHH-HhhcCCCCeEEEEEeCCCCccccccCHHHHHH-HH----HHcCCeEEEecCCCCCCHHHHHH
Q 042687 94 ITKRQTFDNVTRWLREL-RDHADSNIVIMMAGNKSDLNHLRAVAAEDAQI-LA----EKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
++++.++.....++..+ ......++|+++|+||+|+.+.. ...++.. +. ...+.+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99988877765555543 33333479999999999986532 1222222 21 11235799999999999999999
Q ss_pred HHHH
Q 042687 168 TILL 171 (217)
Q Consensus 168 ~l~~ 171 (217)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9975
No 122
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=2.5e-26 Score=167.54 Aligned_cols=141 Identities=37% Similarity=0.672 Sum_probs=126.7
Q ss_pred CccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc
Q 042687 35 NEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHA 114 (217)
Q Consensus 35 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~ 114 (217)
+.|...+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45667788999989988888899999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 042687 115 DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 115 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
..++|++||+||+|+.+.+.+...++..++..+++.++++||++|.|++++|++|++.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5579999999999997666777788888888889999999999999999999999987643
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=4.7e-27 Score=168.95 Aligned_cols=151 Identities=22% Similarity=0.400 Sum_probs=118.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
||+++|.+|||||||++++.+... ..+.++.+... ..+.+. .+.+.+||+||++.+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999874 34455555433 334444 3678899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHH
Q 042687 94 ITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAE-----KEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+++++++.....|+..+.... ..+.|+++++||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888877765543 3589999999999987533 2223333222 2346899999999999999999
Q ss_pred HHHH
Q 042687 168 TILL 171 (217)
Q Consensus 168 ~l~~ 171 (217)
+|+.
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 124
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.5e-26 Score=179.89 Aligned_cols=142 Identities=25% Similarity=0.482 Sum_probs=122.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC-------------CeEEEEEEEecCChhhh
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-------------GKTVKAQIWDTAGQERY 74 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~ 74 (217)
++...+||+|+|..|||||||+++|+++.+...+.+|.+.++....+.++ +..+.+.||||+|++.|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 44567999999999999999999999999988888998888776666654 25688999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC------------CCCeEEEEEeCCCCcccc---c---cC
Q 042687 75 RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD------------SNIVIMMAGNKSDLNHLR---A---VA 136 (217)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~nK~Dl~~~~---~---~~ 136 (217)
..++..+++++|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+ . +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987631 258999999999996542 2 25
Q ss_pred HHHHHHHHHHcCC
Q 042687 137 AEDAQILAEKEGL 149 (217)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (217)
.+++++++...++
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 6789999998873
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=2.4e-26 Score=169.34 Aligned_cols=156 Identities=17% Similarity=0.288 Sum_probs=120.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+++|.+|||||||+++|.++.+.. +.+|.+.. ...+..++ +++.+||+||+..++..+..++.++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 345899999999999999999999887643 34444332 22333443 67889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHH------------cCCeEEEecC
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK------------EGLSFLETSA 156 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~vSa 156 (217)
+|+|+++++++.....++..+.... ..+.|+++|+||+|+.. .+..+++...... ....++++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999999888877777765432 24789999999999864 3344454433211 1245999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 042687 157 LEALNVEKAFQTILLD 172 (217)
Q Consensus 157 ~~~~gv~~~~~~l~~~ 172 (217)
++|.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 126
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=1.2e-25 Score=154.87 Aligned_cols=161 Identities=22% Similarity=0.366 Sum_probs=128.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
+..++|+++|..||||||++++|.+.. .....||.+ +......+++ +++++||.+|+...++.|+.|+..+|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 457999999999999999999998765 344456655 4444444444 67889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEeCCCCcccc---ccC-HHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRD-HADSNIVIMMAGNKSDLNHLR---AVA-AEDAQILAEKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~---~~~-~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 164 (217)
+|+|.+|+..+++-...+..+.. ..-.+.|++|++||.|++..- .+. ..+++++++..+++++.|||.+|+++.+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence 99999999888876555555332 223479999999999997421 111 1235667778889999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 165 AFQTILLDIYH 175 (217)
Q Consensus 165 ~~~~l~~~~~~ 175 (217)
.++||++.+.+
T Consensus 169 gidWL~~~l~~ 179 (185)
T KOG0073|consen 169 GIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.3e-25 Score=160.87 Aligned_cols=151 Identities=22% Similarity=0.413 Sum_probs=119.7
Q ss_pred EEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeC
Q 042687 15 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 94 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~ 94 (217)
|+++|++|||||||+++|.+..+...+.++.+.+... +..++ +.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 8999999999999999999999888888887755543 33443 6789999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHH-HH----HHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 95 TKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQ-IL----AEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 95 ~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
+++.++.....|+..+... ...++|+++|+||+|+..... ..+.. .+ .....++++++|++++.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 9998888877777665442 224789999999999865322 12221 11 1123467999999999999999999
Q ss_pred HHH
Q 042687 169 ILL 171 (217)
Q Consensus 169 l~~ 171 (217)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 975
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.1e-25 Score=165.10 Aligned_cols=154 Identities=23% Similarity=0.292 Sum_probs=112.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc-------cccCCCCC------cceeeEEEEEE--E---CCeEEEEEEEecCChhhhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE-------FCLESKST------IGVEFATRTLQ--V---EGKTVKAQIWDTAGQERYR 75 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~-------~~~~~~~t------~~~~~~~~~~~--~---~~~~~~~~i~D~~G~~~~~ 75 (217)
+|+++|+++||||||+++|++.. +...+.++ .+.++...... + ++..+.+++|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999998742 11112121 12233332222 2 5667889999999999999
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC---eEE
Q 042687 76 AITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL---SFL 152 (217)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 152 (217)
..+..++..+|++|+|||+++..+......|.... . .++|+++|+||+|+.+.. .......++...++ +++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876666665554332 2 378999999999986422 12233455565665 489
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q 042687 153 ETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 153 ~vSa~~~~gv~~~~~~l~~~~ 173 (217)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998754
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=1.1e-25 Score=163.42 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc---------cchhhhhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR---------AITSAYYR 83 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~ 83 (217)
.+|+++|++|||||||+++|.+..+.....+..+.+.....+.. ..+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37999999999999999999998764332222222232222222 34678899999973210 01111123
Q ss_pred CCcEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 84 GAVGALLVYDITKRQT--FDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
.+|++|+|+|++++.+ ++....|+..+.... .+.|+++|+||+|+....... +...+....+++++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 4689999999998754 355567777776544 379999999999986543322 24455555678999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDI 173 (217)
Q Consensus 162 v~~~~~~l~~~~ 173 (217)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=9.9e-26 Score=163.86 Aligned_cols=157 Identities=16% Similarity=0.119 Sum_probs=111.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh----hhccchhhh---hcCCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----RYRAITSAY---YRGAV 86 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~---~~~~d 86 (217)
+|+++|.+|||||||+++|.+........+..+.+.....+.+++. ..+.+|||||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999876542221122222222223333332 468899999963 222223333 45699
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHHHHHHHHH-cCCeEEEecCCCCCCH
Q 042687 87 GALLVYDITKR-QTFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAEDAQILAEK-EGLSFLETSALEALNV 162 (217)
Q Consensus 87 ~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~gv 162 (217)
++++|+|++++ ++++.+..|+..+..... .++|+++|+||+|+.+.... ......+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888899888876542 37899999999998654433 2334445555 3678999999999999
Q ss_pred HHHHHHHHHH
Q 042687 163 EKAFQTILLD 172 (217)
Q Consensus 163 ~~~~~~l~~~ 172 (217)
+++|++|.++
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=6.7e-25 Score=156.92 Aligned_cols=157 Identities=36% Similarity=0.562 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..++..++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999999876777777777777766777877788999999999999999988999999999999
Q ss_pred eCCCh-hhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 93 DITKR-QTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 93 d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
|+... .++.... .|+..+......+.|+++++||+|+.... ........+......+++++||.++.|+.++|++|.
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 99876 5555554 66666666554488999999999986533 223333344444456899999999999999999873
No 132
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=163.26 Aligned_cols=170 Identities=39% Similarity=0.593 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|+.|||||||+++|..+.+...+.+|.+..+...........+++.+|||+|++.++.++..++.++++++++|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 89999999999999999999999999989988887887777777666888999999999999999999999999999999
Q ss_pred eCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc------------ccCHHHHHHHHHHc---CCeEEEecC
Q 042687 93 DITKRQ-TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR------------AVAAEDAQILAEKE---GLSFLETSA 156 (217)
Q Consensus 93 d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~vSa 156 (217)
|..+.. +.+....|...+........|+++++||+|+.... .............. ...++++|+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 999944 55556899999888876579999999999996642 22222222222222 334899999
Q ss_pred C--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 042687 157 L--EALNVEKAFQTILLDIYHIISKKAL 182 (217)
Q Consensus 157 ~--~~~gv~~~~~~l~~~~~~~~~~~~~ 182 (217)
. ++.+++++|..+++.+.+.......
T Consensus 166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 193 (219)
T COG1100 166 KSLTGPNVNELFKELLRKLLEEIEKLVL 193 (219)
T ss_pred ccCCCcCHHHHHHHHHHHHHHhhhhhhh
Confidence 9 9999999999999988766554443
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=2e-25 Score=167.05 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=113.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh---------hccchhh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER---------YRAITSA 80 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~ 80 (217)
++.++|+|+|++|||||||++++.+..+.....+..+.+.....+.+++. ..+.+|||||... +...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 45689999999999999999999998654332222223333334444443 2678999999621 22211 2
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCC
Q 042687 81 YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEAL 160 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 160 (217)
.+..+|++++|+|++++.+......|...+......++|+++|+||+|+...... .......+.+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence 3678999999999999888877777777776655557899999999998653321 13344556789999999999
Q ss_pred CHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLD 172 (217)
Q Consensus 161 gv~~~~~~l~~~ 172 (217)
|+++++++|...
T Consensus 192 gi~~l~~~L~~~ 203 (204)
T cd01878 192 GLDELLEAIEEL 203 (204)
T ss_pred CHHHHHHHHHhh
Confidence 999999999765
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=7.4e-25 Score=173.97 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh-------hccchhhhhcCC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYYRGA 85 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 85 (217)
-.|+|+|.+|||||||+++|.+........+.++.......+.+.+ ...+.+||+||..+ ....+...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 3689999999999999999998654433323333444444444422 23578999999532 122233456689
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 042687 86 VGALLVYDITKRQTFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 163 (217)
+++|+|+|+++.++++.+..|...+..... .++|+++|+||+|+.+.......+...+....+++++++||+++.|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999988888888999888877643 378999999999997644333334555555667899999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYH 175 (217)
Q Consensus 164 ~~~~~l~~~~~~ 175 (217)
+++++|.+.+.+
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=8.6e-25 Score=159.42 Aligned_cols=152 Identities=22% Similarity=0.352 Sum_probs=115.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+|+|++|||||||++++.+..+. .+.++.+.+. ..+..++ ..+.+||+||+..+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 44699999999999999999999987653 3445555333 3344444 56789999999988888889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC--------CeEEEecCCCCC
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG--------LSFLETSALEAL 160 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~vSa~~~~ 160 (217)
+|+|+++..++.....|+..+... ...++|+++++||+|+.+... ..++ ....+ ++++++||++|.
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEI---AEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHH---HHHcCCcccCCCeEEEEEeECCCCC
Confidence 999999988888776666555432 234799999999999865221 2222 22222 247899999999
Q ss_pred CHHHHHHHHHH
Q 042687 161 NVEKAFQTILL 171 (217)
Q Consensus 161 gv~~~~~~l~~ 171 (217)
|++++|+||.+
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.3e-24 Score=156.93 Aligned_cols=151 Identities=19% Similarity=0.141 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc---cccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE---FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
.|+++|.+|||||||+++|.+.. +...+.++.+.+.....+.+.. ...+.+|||||++.+......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 68999999999999999998642 3223233333334334444442 3478899999999887777778889999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc--cCHHHHHHHHHH---cCCeEEEecCCCCCCH
Q 042687 91 VYDITK---RQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA--VAAEDAQILAEK---EGLSFLETSALEALNV 162 (217)
Q Consensus 91 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~vSa~~~~gv 162 (217)
|+|+++ +++.+.+ ..+... . ..|+++++||+|+..... ....+....... .+.+++++||+++.|+
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 999987 3333322 222222 1 248999999999965321 112334444443 4578999999999999
Q ss_pred HHHHHHHHH
Q 042687 163 EKAFQTILL 171 (217)
Q Consensus 163 ~~~~~~l~~ 171 (217)
+++++++..
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998754
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=3.6e-25 Score=156.41 Aligned_cols=134 Identities=24% Similarity=0.255 Sum_probs=99.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh-----hhccchhhhhcCCcEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE-----RYRAITSAYYRGAVGA 88 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~i 88 (217)
||+++|++|||||||+++|.+..+. +.+|.+.+ +.. .+|||||.. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 8999999999999999999987652 22332221 211 589999972 333333 357899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNVEKAFQ 167 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~~~~ 167 (217)
|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ +....++...++...+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999888654 3443322 348999999999865 33445566777777776 899999999999999999
Q ss_pred HHH
Q 042687 168 TIL 170 (217)
Q Consensus 168 ~l~ 170 (217)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.93 E-value=1.8e-24 Score=147.42 Aligned_cols=174 Identities=24% Similarity=0.348 Sum_probs=141.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccC--CCCCcceeeEEEEEEE-CCeEEEEEEEecCChhhh-ccchhhhhcCCc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE--SKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERY-RAITSAYYRGAV 86 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d 86 (217)
...||+++|..++|||+++..+..+...+. ..+|.+. .+...+.. .+..-.+.++||.|.... ..+-+.|+..+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiED-iY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIED-IYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhh-heeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 458999999999999999999987665433 3366543 33444433 455567899999997665 667788999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
++++|||..|++||+.++.+-..|..+.+ ..+|+++++||+|+.+++.+..+-+..|++...+.++++++.+...+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999998666666655543 58999999999999888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042687 166 FQTILLDIYHIISKKALAAQ 185 (217)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~ 185 (217)
|.++...+.....++.+++.
T Consensus 167 f~~l~~rl~~pqskS~Fpl~ 186 (198)
T KOG3883|consen 167 FTYLASRLHQPQSKSTFPLS 186 (198)
T ss_pred HHHHHHhccCCcccccCcch
Confidence 99999988776666555444
No 139
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-24 Score=153.02 Aligned_cols=160 Identities=19% Similarity=0.346 Sum_probs=129.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
.....+|+++|-.++||||++++|..++.-.. .||.+.+..... +. .+++++||..|++.++..|+.|+++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~--yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVE--YK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEE--Ec--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 34568999999999999999999988877444 788775555544 44 57899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAE-----KEGLSFLETSALEALNV 162 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv 162 (217)
|||+|.+|++.+..++..+..+..+.. ...|+++++||.|+++. .+..++..... ...+.+..++|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999999998777777665554 68999999999998763 33444433332 23456888999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 163 EKAFQTILLDIYH 175 (217)
Q Consensus 163 ~~~~~~l~~~~~~ 175 (217)
.+.++|+.+.+..
T Consensus 167 ~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 167 YEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987743
No 140
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=1.5e-25 Score=167.34 Aligned_cols=158 Identities=23% Similarity=0.231 Sum_probs=107.4
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCC-----------hhh
Q 042687 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG-----------QER 73 (217)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~ 73 (217)
..+++...++|+++|.+|||||||+++|.+..+.....++. ++....+... .+.+||||| .+.
T Consensus 2 ~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~ 75 (201)
T PRK04213 2 FETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEK 75 (201)
T ss_pred CcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHH
Confidence 34555667999999999999999999999887654444433 3333333333 478999999 456
Q ss_pred hccchhhhhc----CCcEEEEEEeCCChhhH-H---------HHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHH
Q 042687 74 YRAITSAYYR----GAVGALLVYDITKRQTF-D---------NVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAED 139 (217)
Q Consensus 74 ~~~~~~~~~~----~~d~ii~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 139 (217)
++..+..++. .++++++|+|.++...+ + .-..++..+.. .++|+++|+||+|+.+.. .+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~ 149 (201)
T PRK04213 76 IKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DEV 149 (201)
T ss_pred HHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HHH
Confidence 6666555553 45788888888653211 0 00112222222 379999999999986533 234
Q ss_pred HHHHHHHcCC---------eEEEecCCCCCCHHHHHHHHHHHHHH
Q 042687 140 AQILAEKEGL---------SFLETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 140 ~~~~~~~~~~---------~~~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
..++....++ +++++||++| |++++|++|.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 150 LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 4555555554 5899999999 999999999987644
No 141
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=2.3e-24 Score=152.21 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh------hccchhhhh--cC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER------YRAITSAYY--RG 84 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~~~~--~~ 84 (217)
++|+++|.||||||||+|+|.+........|..+.+.....+.+++. .+.++|+||.-. .......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~--~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ--QVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE--EEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc--eEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999999876666677777777777888774 566999999321 122233343 68
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 042687 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 164 (217)
.|++|.|.|+++.+ .-..+...+.+. ++|+++++||+|+...+... .+...+.+.+++|++++||.++.|+++
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999998743 222344445554 89999999999986644332 246778888999999999999999999
Q ss_pred HHHHH
Q 042687 165 AFQTI 169 (217)
Q Consensus 165 ~~~~l 169 (217)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98865
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=5.4e-24 Score=154.37 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC-CeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
.|+|+|.+|+|||||+++|....+...+.++.+.+.....+..+ +....+.+|||||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999888765544443333333333333 13467889999999998888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC-HHHHHHHHH------HcCCeEEEecCCCCCCHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA-AEDAQILAE------KEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~------~~~~~~~~vSa~~~~gv~~~ 165 (217)
|+++....+.. ..+..+.. .++|+++|+||+|+....... ..+...+.. ...++++++|+.+|.|++++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99875322222 12222332 378999999999986422111 111222111 12368999999999999999
Q ss_pred HHHHHHHH
Q 042687 166 FQTILLDI 173 (217)
Q Consensus 166 ~~~l~~~~ 173 (217)
+++|.+..
T Consensus 158 ~~~l~~~~ 165 (168)
T cd01887 158 LEAILLLA 165 (168)
T ss_pred HHHHHHhh
Confidence 99998865
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=2.1e-23 Score=147.90 Aligned_cols=153 Identities=48% Similarity=0.819 Sum_probs=121.9
Q ss_pred EEcCCCCCHHHHHhHHhcCcc-ccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCC
Q 042687 17 LIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 95 (217)
Q Consensus 17 i~G~~~~GKstLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (217)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44444554 6676777777777889999999999888887888899999999999999
Q ss_pred ChhhHHHHHHHH-HHHHhhcCCCCeEEEEEeCCCCccccccCHHH-HHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 96 KRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNHLRAVAAED-AQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 96 ~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
++.++..+..|. .........++|+++++||+|+.......... ........+++++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888887762 23333444589999999999987644332222 3445556678999999999999999999985
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1e-23 Score=151.40 Aligned_cols=148 Identities=19% Similarity=0.198 Sum_probs=110.6
Q ss_pred EEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc------chhhhh--cCCcEE
Q 042687 17 LIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA------ITSAYY--RGAVGA 88 (217)
Q Consensus 17 i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~d~i 88 (217)
|+|.+|||||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||+..+.. ++..++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998865544445555555556666665 4678999999876554 245555 499999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
|+|+|+.+++... .|+..+... ++|+++|+||+|+.+..... .+...+....+++++++||.++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~~---~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLEL---GLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHHc---CCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998865432 334344332 78999999999996644333 2345677777899999999999999999999
Q ss_pred HHHHH
Q 042687 169 ILLDI 173 (217)
Q Consensus 169 l~~~~ 173 (217)
|.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98753
No 145
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=5.6e-24 Score=158.03 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc--CccccCC------------CCCcceeeEEEEEEECCeEEEEEEEecCChhhhccch
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR--NEFCLES------------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT 78 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 78 (217)
-+|+++|.++||||||+++|+. +.+...+ ..+.+.+.......+++..+.+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4443322 1223334444444455556788999999999999999
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc-CHHHHHHHHH-------HcCCe
Q 042687 79 SAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-AAEDAQILAE-------KEGLS 150 (217)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~ 150 (217)
..+++.+|++++|||+++.. ......++..+.. .++|+++++||+|+...+.. ..+++..+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2222334443333 37899999999998643221 1233444432 23678
Q ss_pred EEEecCCCCCCHHHH
Q 042687 151 FLETSALEALNVEKA 165 (217)
Q Consensus 151 ~~~vSa~~~~gv~~~ 165 (217)
++++||++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887554
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=2.2e-23 Score=165.44 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh----hccch---hhhhcCC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----YRAIT---SAYYRGA 85 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~---~~~~~~~ 85 (217)
-.|+|+|.+|||||||+++|.+........+.++.......+.+++ ...+.+||+||... ...+. ...+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4789999999999999999998764333222223344444444543 24678999999632 11222 3335679
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCC
Q 042687 86 VGALLVYDITKR---QTFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEAL 160 (217)
Q Consensus 86 d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 160 (217)
+++|+|+|+++. ++++.+..|...+..... .++|++||+||+|+..... .....+.+....+.+++++||+++.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999976 677888888877765532 3789999999999975432 2334555666677899999999999
Q ss_pred CHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDI 173 (217)
Q Consensus 161 gv~~~~~~l~~~~ 173 (217)
|+++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 147
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=1.8e-23 Score=167.29 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=111.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh---------hhhccchhhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ---------ERYRAITSAY 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~ 81 (217)
..++|+++|.+|+|||||+|+|.+..+.....+..+.+.....+.+.+. ..+.+|||+|. +.|...+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999998754333333334555566666322 36789999996 2233322 34
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+..... ..... ....+++++||++|.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCCC
Confidence 78999999999999988877776666666655445789999999999865221 21111 1224689999999999
Q ss_pred HHHHHHHHHHH
Q 042687 162 VEKAFQTILLD 172 (217)
Q Consensus 162 v~~~~~~l~~~ 172 (217)
+++++++|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 148
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=4.1e-24 Score=144.67 Aligned_cols=156 Identities=21% Similarity=0.383 Sum_probs=123.1
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.+.+.++|-.++|||||+|.+..+.+...-.||.+.+.+. +....+.+.+||.+|++.|+.+|+.|++.++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 4789999999999999999999989888888887754432 444556788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEeCCCCccccccCHHH-HHHH----HHHcCCeEEEecCCCCCCHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRD-HADSNIVIMMAGNKSDLNHLRAVAAED-AQIL----AEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~----~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
+|+++++.+......++.+.. ..-.++|++|++||.|+++. ..... ++++ .....+-.|.+|+++..+++.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 999999888877555555433 33458999999999998762 22222 2222 1123355899999999999999
Q ss_pred HHHHHHHH
Q 042687 166 FQTILLDI 173 (217)
Q Consensus 166 ~~~l~~~~ 173 (217)
.+||+++-
T Consensus 174 ~~Wli~hs 181 (186)
T KOG0075|consen 174 LDWLIEHS 181 (186)
T ss_pred HHHHHHHh
Confidence 99998864
No 149
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.91 E-value=1.3e-23 Score=143.51 Aligned_cols=168 Identities=26% Similarity=0.528 Sum_probs=146.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
+.--.+||.++|++..|||||+-+++++.++..+..+.|.++..+.+.+.+..+.+.|||..|++++..+......++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 33456899999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc----cc-cccCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN----HL-RAVAAEDAQILAEKEGLSFLETSALEALNV 162 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 162 (217)
++|+||++.+.++..+..|+...+......+|+ +|++|.|+- .+ ...-..+++.+++-.++++|.+|+..+.|+
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 999999999999999999999988877655664 679999962 11 111124577888889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 042687 163 EKAFQTILLDIYHI 176 (217)
Q Consensus 163 ~~~~~~l~~~~~~~ 176 (217)
+.+|..+..++...
T Consensus 175 ~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 175 QKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999998877653
No 150
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=4.7e-23 Score=160.36 Aligned_cols=152 Identities=17% Similarity=0.137 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCC-CCcceeeEEEEEEECCeEEEEEEEecCChhhh--------ccchhhhhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGVEFATRTLQVEGKTVKAQIWDTAGQERY--------RAITSAYYRG 84 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~ 84 (217)
+|+|+|.+|||||||+|+|.+..+...+. +.++..........++ ..+.+|||||.... ......++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987654332 2222222222222233 46789999996432 1113456789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCHH
Q 042687 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNVE 163 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~ 163 (217)
+|++++|+|+++..+.. ..++..+... +.|+++|+||+|+...... ......+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~~---~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQNL---KRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHhc---CCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999876654 3444444432 7899999999998642221 2234444444444 79999999999999
Q ss_pred HHHHHHHHHH
Q 042687 164 KAFQTILLDI 173 (217)
Q Consensus 164 ~~~~~l~~~~ 173 (217)
+++++|.+.+
T Consensus 154 ~L~~~l~~~l 163 (270)
T TIGR00436 154 FLAAFIEVHL 163 (270)
T ss_pred HHHHHHHHhC
Confidence 9999998754
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=4.1e-23 Score=150.81 Aligned_cols=155 Identities=22% Similarity=0.200 Sum_probs=106.8
Q ss_pred EEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh----hccc---hhhhhcCCcEEE
Q 042687 17 LIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----YRAI---TSAYYRGAVGAL 89 (217)
Q Consensus 17 i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~d~ii 89 (217)
|+|++|||||||+++|.+........+..+.+.....+.+++ ...+.+||+||... ...+ +...+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998865222212222223333344441 34678999999632 1222 234577899999
Q ss_pred EEEeCCCh------hhHHHHHHHHHHHHhhcC-------CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecC
Q 042687 90 LVYDITKR------QTFDNVTRWLRELRDHAD-------SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSA 156 (217)
Q Consensus 90 ~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 156 (217)
+|+|++++ .++..+..|...+..... .+.|+++|+||+|+..................+.+++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 577777777777665432 37999999999999764433322223334445678999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 042687 157 LEALNVEKAFQTILLD 172 (217)
Q Consensus 157 ~~~~gv~~~~~~l~~~ 172 (217)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998764
No 152
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=9.8e-23 Score=139.62 Aligned_cols=114 Identities=32% Similarity=0.625 Sum_probs=88.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccc--cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFC--LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
||+|+|+.|||||||+++|++..+. ..+..+.+.+..............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 12223334445555566777777799999999998888888889999999999
Q ss_pred EeCCChhhHHHHHHH---HHHHHhhcCCCCeEEEEEeCCC
Q 042687 92 YDITKRQTFDNVTRW---LRELRDHADSNIVIMMAGNKSD 128 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~i~~~~~~~~p~ivv~nK~D 128 (217)
||++++.+++.+..+ +..+..... .+|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 999999999997554 555554334 699999999998
No 153
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=2.8e-22 Score=164.82 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=115.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc--------hhhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI--------TSAY 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 81 (217)
..++|+++|++|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 5589999999999999999999987543 222344455666666777764 4579999997543322 2356
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
++.+|++++|||++++.+++.. |+..+.. .++|+++|+||+|+... +...++...+.+++++||++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999988776654 6655543 37899999999998642 22345566778899999998 69
Q ss_pred HHHHHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIYHII 177 (217)
Q Consensus 162 v~~~~~~l~~~~~~~~ 177 (217)
++++|+.|.+.+.+..
T Consensus 348 I~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 348 IKALVDLLTQKINAFY 363 (442)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 154
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=1.4e-22 Score=150.24 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC----ccccCC---C--CCcceeeEEEEEE----------ECCeEEEEEEEecCChhh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN----EFCLES---K--STIGVEFATRTLQ----------VEGKTVKAQIWDTAGQER 73 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~----~~~~~~---~--~t~~~~~~~~~~~----------~~~~~~~~~i~D~~G~~~ 73 (217)
++|+++|+.++|||||+++|+.. .+...+ . .|....+....+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999872 121111 1 2222222222222 123356889999999876
Q ss_pred hccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc--CHHHHHHH-HH-----
Q 042687 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--AAEDAQIL-AE----- 145 (217)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~-~~----- 145 (217)
+..........+|++++|+|+.+.........+. +.... +.|+++++||+|+...... ..++.... ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444444567789999999998754333332222 11222 6799999999998642221 11222221 11
Q ss_pred -HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 146 -KEGLSFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 146 -~~~~~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
..+++++++||++|.|+++++++|.+++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23578999999999999999999988763
No 155
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=4e-22 Score=159.32 Aligned_cols=154 Identities=21% Similarity=0.296 Sum_probs=106.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCC-CCcceeeEEEEEEECCeEEEEEEEecCChhh-hccch-------hh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGVEFATRTLQVEGKTVKAQIWDTAGQER-YRAIT-------SA 80 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~~ 80 (217)
...++|+++|.+|||||||+|+|.+..+..... +.++.+.....+..++. .+.+|||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 345799999999999999999999988753222 22223334444555553 578999999742 22211 23
Q ss_pred hhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEecCC
Q 042687 81 YYRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG--LSFLETSAL 157 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~vSa~ 157 (217)
.+..+|++++|+|..+ ++... ..|+..+... +.|.++|+||+|+... ...++..++...+ ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 4679999999999765 33344 3455555443 5677889999998642 2344555555443 579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 042687 158 EALNVEKAFQTILLDI 173 (217)
Q Consensus 158 ~~~gv~~~~~~l~~~~ 173 (217)
+|.|++++|++|.+.+
T Consensus 200 tg~gv~eL~~~L~~~l 215 (339)
T PRK15494 200 SGKNIDGLLEYITSKA 215 (339)
T ss_pred CccCHHHHHHHHHHhC
Confidence 9999999999998864
No 156
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=3e-22 Score=143.41 Aligned_cols=146 Identities=19% Similarity=0.138 Sum_probs=100.5
Q ss_pred EEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc--------chhhhhcCCc
Q 042687 16 VLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA--------ITSAYYRGAV 86 (217)
Q Consensus 16 ~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 86 (217)
+++|.+|+|||||+++|.+.... ....+..+.+........++ ..+.+|||||...+.. .+...+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999987532 12222223333344444444 5678999999876443 3345678999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNVEKA 165 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~~ 165 (217)
++++|+|..++.+.... .+...+... +.|+++|+||+|+...... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875443332 222223322 6999999999998763321 222334555 7899999999999999
Q ss_pred HHHHHHH
Q 042687 166 FQTILLD 172 (217)
Q Consensus 166 ~~~l~~~ 172 (217)
|++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=3.5e-22 Score=166.55 Aligned_cols=159 Identities=21% Similarity=0.230 Sum_probs=112.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCCh----------hhhccch-
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ----------ERYRAIT- 78 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~- 78 (217)
..++|+|+|.+|||||||+|+|++.... ....++++.+.....+..++.. +.+|||||. +.+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4589999999999999999999988753 3334444555555666677754 469999994 2232222
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc--CHHHHHH-HHHHcCCeEEEec
Q 042687 79 SAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--AAEDAQI-LAEKEGLSFLETS 155 (217)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~vS 155 (217)
..+++.+|++|+|||++++.++..+. ++..+.. .++|+++|+||+|+.+.... ...++.. +.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23578999999999999987777653 4444443 38999999999999642211 1112222 2222347899999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 042687 156 ALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 156 a~~~~gv~~~~~~l~~~~~~ 175 (217)
|++|.|++++|+.+.+.+..
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 364 AKTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999886643
No 158
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=4.3e-22 Score=169.02 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=115.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCc-------cccCCCC------CcceeeEEEEE--EE---CCeEEEEEEEecCChhh
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNE-------FCLESKS------TIGVEFATRTL--QV---EGKTVKAQIWDTAGQER 73 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~-------~~~~~~~------t~~~~~~~~~~--~~---~~~~~~~~i~D~~G~~~ 73 (217)
.-+|+|+|+.++|||||+++|+... +...+.. ..+.++....+ .+ ++..+.+++|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999998642 1111111 12333433322 22 46678999999999999
Q ss_pred hccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC---e
Q 042687 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL---S 150 (217)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 150 (217)
|...+..++..+|++|+|+|+++..+.+....|...+. .++|+++|+||+|+.... ......++....++ +
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998766666666654432 278999999999986422 12223455555565 4
Q ss_pred EEEecCCCCCCHHHHHHHHHHHH
Q 042687 151 FLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 151 ~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
++++||++|.|++++|++|.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999998765
No 159
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=3.2e-22 Score=147.61 Aligned_cols=154 Identities=21% Similarity=0.236 Sum_probs=109.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCC----------------cceeeEEEEEEECCeEEEEEEEecCChhhhccc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKST----------------IGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI 77 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t----------------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (217)
+|+|+|.+|+|||||+++|.+.........+ .+.......+... ...+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 5899999999999999999987665433211 1122222222233 457889999999988888
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc--CHHHHHHHHHH---------
Q 042687 78 TSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--AAEDAQILAEK--------- 146 (217)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~--------- 146 (217)
+..++..+|++++|+|+.++..... ..++..+.. .+.|+++++||+|+...... ....+......
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8899999999999999987654332 233444433 38999999999998652221 12223333322
Q ss_pred -----cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 147 -----EGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 147 -----~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
...+++++||++|.|+++++.+|.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 357899999999999999999998864
No 160
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=8.5e-22 Score=141.00 Aligned_cols=146 Identities=19% Similarity=0.244 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCcccc-CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc--------hhhhhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI--------TSAYYR 83 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 83 (217)
++|+++|++|+|||||++++.+..... ...++.+.+.....+..++ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999999876532 2223333344444444444 46789999996543321 234567
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 163 (217)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+...... .....+.+++++||+++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998776666543332 237999999999998753332 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 042687 164 KAFQTILLDI 173 (217)
Q Consensus 164 ~~~~~l~~~~ 173 (217)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 161
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.89 E-value=9.7e-22 Score=146.15 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=107.1
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh----------hhh
Q 042687 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ----------ERY 74 (217)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~ 74 (217)
.....+..++|+|+|.+|+|||||+++|.+..+...+.++.+.+........ ...+.+|||||. +.+
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~ 93 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKW 93 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHH
Confidence 3345557789999999999999999999987654444444443333322222 257889999994 344
Q ss_pred ccchhhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC--HHHHHHHHHHcCC
Q 042687 75 RAITSAYYRG---AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA--AEDAQILAEKEGL 149 (217)
Q Consensus 75 ~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~ 149 (217)
..+...++.. ++++++++|.+++...... .+...+.. .+.|+++++||+|+.+..+.. ..++.........
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~ 169 (196)
T PRK00454 94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD 169 (196)
T ss_pred HHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 4444555554 4678888998765433221 11222222 278999999999986533221 1223344444467
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Q 042687 150 SFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 150 ~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
+++++||+++.|+++++++|.+.+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 899999999999999999998765
No 162
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.5e-21 Score=158.90 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=113.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh----hccchhhh---hcCCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----YRAITSAY---YRGAV 86 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 86 (217)
.|+|+|.+|||||||+++|++........+.++.......+.+++ ...+.+||+||... ...+...+ +..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 899999999999999999998764432222223333333334431 24678999999532 12233333 45699
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 87 GALLVYDITKR---QTFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
++|+|+|+++. ++++....|...+..... .++|++||+||+|+.. ..+....+....+.+++++||+++.|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 567777777777766543 3789999999999843 13345666666678899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIYHI 176 (217)
Q Consensus 162 v~~~~~~l~~~~~~~ 176 (217)
+++++++|.+.+.+.
T Consensus 315 I~eL~~~L~~~l~~~ 329 (424)
T PRK12297 315 LDELLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999998876543
No 163
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.1e-22 Score=132.83 Aligned_cols=155 Identities=21% Similarity=0.396 Sum_probs=123.6
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.++|+.+|-.++||||++.+|+-+.. ....+|++.+... +.+ ..+++++||.+|++..+..|+.|+....++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvet--Vty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC-cccccccceeEEE--EEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 58999999999999999999987664 4455676654444 334 346788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILA-----EKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~gv~~~ 165 (217)
+|.++++.+++.+..+..+.... -...|++|.+||.|++... +..|+..+. +...+-+.++++.+|+|+.+-
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 99999988888876666655443 3579999999999998633 345554443 333466889999999999999
Q ss_pred HHHHHHHH
Q 042687 166 FQTILLDI 173 (217)
Q Consensus 166 ~~~l~~~~ 173 (217)
|.||.+.+
T Consensus 170 lswlsnn~ 177 (180)
T KOG0071|consen 170 LSWLSNNL 177 (180)
T ss_pred HHHHHhhc
Confidence 99998754
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=5.9e-22 Score=165.16 Aligned_cols=156 Identities=23% Similarity=0.249 Sum_probs=109.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCcccc-CCCCCcceeeEEEEEEECCeEEEEEEEecCChhh--------hccchhh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER--------YRAITSA 80 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 80 (217)
...++|+|+|.+|||||||+|+|++..... ...++.+.+.....+..++. .+.+|||||.+. +...+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~ 113 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEV 113 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence 345799999999999999999999876542 33344444555555555554 577999999652 3344556
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCC
Q 042687 81 YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEAL 160 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 160 (217)
++..+|++|+|||+++..+... ..|...+.. .++|+++|+||+|+.... .+..+.+....+ ..+++||++|.
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~ 185 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGR 185 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCC
Confidence 7889999999999998755432 344444443 379999999999986421 112222222233 35799999999
Q ss_pred CHHHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDIYH 175 (217)
Q Consensus 161 gv~~~~~~l~~~~~~ 175 (217)
|++++|++|++.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999987744
No 165
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=9.4e-22 Score=160.88 Aligned_cols=158 Identities=18% Similarity=0.161 Sum_probs=110.7
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhh--ccch------hhhhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY--RAIT------SAYYR 83 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~------~~~~~ 83 (217)
.++|+|+|.+|||||||+|+|.+..+.....+..+.+.....+.+.+. ..+.+|||+|.... ...+ ...+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987765433333344555555555442 15679999996321 1112 23468
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCe-EEEecCCCCCCH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLS-FLETSALEALNV 162 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~gv 162 (217)
.+|++|+|+|++++.+.+.+..|...+......++|+++|+||+|+..... .... ....+.+ ++++||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence 899999999999988777766555555554444799999999999864211 1111 1123455 588999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 163 EKAFQTILLDIYH 175 (217)
Q Consensus 163 ~~~~~~l~~~~~~ 175 (217)
++++++|.+.+..
T Consensus 351 deL~e~I~~~l~~ 363 (426)
T PRK11058 351 PLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988743
No 166
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=5.4e-22 Score=142.49 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh----hhccchhhhhcCCcEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----RYRAITSAYYRGAVGAL 89 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~ii 89 (217)
+|+++|.+|+|||||+|+|.+... . ...+. .+.+... .+|||||.. .+.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999876431 1 11111 1122222 279999962 22222233478999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC--eEEEecCCCCCCHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL--SFLETSALEALNVEKAFQ 167 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|+++.+++. ..|+..+ ..+.|+++++||+|+.+ ...+...+++...+. |++++||++|.|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999876542 2343332 12678999999999864 234556677777774 899999999999999999
Q ss_pred HHHHHHHH
Q 042687 168 TILLDIYH 175 (217)
Q Consensus 168 ~l~~~~~~ 175 (217)
++.+.+.+
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99887644
No 167
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.4e-21 Score=160.89 Aligned_cols=162 Identities=15% Similarity=0.076 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh----hcc---chhhhhcCC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----YRA---ITSAYYRGA 85 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~---~~~~~~~~~ 85 (217)
-.|+|+|.+|||||||+++|.+........+.++.......+.+.+ ..+.+||+||... ... .....+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 5799999999999999999998765433333333444444555555 4688999999421 111 123346789
Q ss_pred cEEEEEEeCCCh----hhHHHHHHHHHHHHhhc-----------CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCe
Q 042687 86 VGALLVYDITKR----QTFDNVTRWLRELRDHA-----------DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLS 150 (217)
Q Consensus 86 d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (217)
|++|+|+|+++. +.+..+..|...+.... ....|++||+||+|+.+.... .+.........+++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence 999999999753 34555555554544332 136899999999999753322 22233333455789
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHH
Q 042687 151 FLETSALEALNVEKAFQTILLDIYHII 177 (217)
Q Consensus 151 ~~~vSa~~~~gv~~~~~~l~~~~~~~~ 177 (217)
++++||+++.|+++++.+|.+.+.+..
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999876543
No 168
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=7.2e-22 Score=163.18 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=110.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc--------hhhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI--------TSAY 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 81 (217)
..++|+++|.+|+|||||+|+|.+.... ....+..+.+.....+.+++. .+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3489999999999999999999987653 223344445555666666664 5679999997643322 2346
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
+..+|++++|||++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999998877665544432 2378999999999996532211 33456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIYH 175 (217)
Q Consensus 162 v~~~~~~l~~~~~~ 175 (217)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987743
No 169
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.88 E-value=1.8e-21 Score=165.11 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC---ccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN---EFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
+.|+++|+.++|||||+++|.+. .+..++.++.+.+.....+..++ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 47999999999999999999863 33344445555666555666666 67889999999999888888899999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCcccccc--CHHHHHHHHHHc----CCeEEEecCCCC
Q 042687 90 LVYDITK---RQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV--AAEDAQILAEKE----GLSFLETSALEA 159 (217)
Q Consensus 90 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~vSa~~~ 159 (217)
+|+|+++ +++.+.+ ..+... ++| ++|++||+|+.+.... ..+++..+.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999987 3343332 223222 677 9999999999754322 123455555544 578999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLDIYH 175 (217)
Q Consensus 160 ~gv~~~~~~l~~~~~~ 175 (217)
.|+++++.+|.+.+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999988776543
No 170
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.8e-22 Score=142.48 Aligned_cols=162 Identities=31% Similarity=0.560 Sum_probs=143.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
-..++++++|..|.||||+++++..+.|...+.+|.+.+.....+..+...+++..|||.|++.+......++-.+..+|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 46799999999999999999999999999999999999988888776666799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
++||++.+-.+..+.+|...+...+. ++|+++++||.|..... .......+.+..++.+++.|++.+-|.+..|.|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence 99999999999999999999888887 69999999999976522 1234455667778999999999999999999999
Q ss_pred HHHHH
Q 042687 170 LLDIY 174 (217)
Q Consensus 170 ~~~~~ 174 (217)
.+++.
T Consensus 165 arKl~ 169 (216)
T KOG0096|consen 165 ARKLT 169 (216)
T ss_pred hhhhc
Confidence 98774
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2.2e-21 Score=164.01 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=110.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
...+|+++|+.++|||||+++|.+..+.....++.+.+.....+..++. ..+.+||||||+.|..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4479999999999999999999988776655444444444444444332 167899999999999999888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHH-------cC--CeEEEecCCCCCC
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK-------EG--LSFLETSALEALN 161 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~vSa~~~~g 161 (217)
|+|+++....+..+.+ .... ..++|+++++||+|+.+. ..++....... ++ .+++++||++|.|
T Consensus 165 VVda~dgv~~qT~e~i-~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTIEAI-SHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHHHHH-HHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999874322222222 2222 237999999999998642 12233222222 22 4799999999999
Q ss_pred HHHHHHHHHH
Q 042687 162 VEKAFQTILL 171 (217)
Q Consensus 162 v~~~~~~l~~ 171 (217)
++++|++|..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999864
No 172
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=1.1e-21 Score=146.53 Aligned_cols=159 Identities=19% Similarity=0.169 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCcccc---CCCCCcceeeEEEEEEE-------------------------C--C----
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCL---ESKSTIGVEFATRTLQV-------------------------E--G---- 58 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~-------------------------~--~---- 58 (217)
++|+++|+.|+|||||+..+.+-..+. ......+.......+.. . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999996542111 11111111111001000 0 1
Q ss_pred eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC--
Q 042687 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA-- 136 (217)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-- 136 (217)
....+.+|||||++.+...+...+..+|++++|+|++++.........+..+... . ..|+++++||+|+.......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G-LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C-CCcEEEEEEchhccCHHHHHHH
Confidence 1157889999999998888888889999999999998731111111122222222 1 34789999999986532211
Q ss_pred HHHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 137 AEDAQILAEKE---GLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 137 ~~~~~~~~~~~---~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
.+++..+.... +++++++||++|.|++++|++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 12334444332 57899999999999999999998754
No 173
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=4.2e-21 Score=158.92 Aligned_cols=159 Identities=25% Similarity=0.225 Sum_probs=109.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCcccc-CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc-----------
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI----------- 77 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 77 (217)
...++|+++|.+|+|||||+++|++..... ...+..+.+.....+..++. .+.+|||||.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 345899999999999999999999876432 22233334444445555554 5779999996433221
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHH-HHHHH----cCCeEE
Q 042687 78 TSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQ-ILAEK----EGLSFL 152 (217)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 152 (217)
...+++.+|++|+|+|++++.+.... .++..+... ++|+++|+||+|+..... ..++.. .+... ..++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~~---~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL-RIAGLILEA---GKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHHc---CCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCceE
Confidence 13467899999999999987766554 333333332 789999999999872111 111221 22222 247899
Q ss_pred EecCCCCCCHHHHHHHHHHHHHH
Q 042687 153 ETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 153 ~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
++||++|.|++++|+++.+.+.+
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999986654
No 174
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=6.6e-21 Score=154.27 Aligned_cols=160 Identities=17% Similarity=0.098 Sum_probs=112.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhh-------ccchhhhhcCCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY-------RAITSAYYRGAV 86 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d 86 (217)
.|+|+|.+|||||||+|+|++........+.++.......+..++ ...+.++|+||...- .......+..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999998765433333333444444444442 225779999995321 111223578899
Q ss_pred EEEEEEeCC---ChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEecCCCC
Q 042687 87 GALLVYDIT---KRQTFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG--LSFLETSALEA 159 (217)
Q Consensus 87 ~ii~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~ 159 (217)
++++|+|++ +.+.++....|+..+..... .+.|+++|+||+|+.....+ .+.+..+....+ .+++++||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 45567777777777766432 36899999999998653322 233444554444 47999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLDIYH 175 (217)
Q Consensus 160 ~gv~~~~~~l~~~~~~ 175 (217)
.|+++++++|.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999887744
No 175
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=3.2e-21 Score=141.47 Aligned_cols=149 Identities=20% Similarity=0.252 Sum_probs=98.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh----------hhhccc
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ----------ERYRAI 77 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~ 77 (217)
+....++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+..++ .+.+|||||. +.+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 345668999999999999999999998764333334444333333333333 5789999994 233333
Q ss_pred hhhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc--CHHHHHHHHHHcC--Ce
Q 042687 78 TSAYYR---GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--AAEDAQILAEKEG--LS 150 (217)
Q Consensus 78 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~ 150 (217)
...+++ .+|++++|+|++++.+.... .++..+.. .++|+++++||+|+...... ..++++......+ ++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 444554 46899999999875443433 22333333 37899999999998643221 2334445555443 47
Q ss_pred EEEecCCCCCCHH
Q 042687 151 FLETSALEALNVE 163 (217)
Q Consensus 151 ~~~vSa~~~~gv~ 163 (217)
++++||++|.|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999974
No 176
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=1.9e-21 Score=143.77 Aligned_cols=159 Identities=20% Similarity=0.247 Sum_probs=108.5
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccC------------------CCCCcceeeEEEEEEECCeEEEEEEEecCChh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE------------------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 72 (217)
..++|+++|+.++|||||+.+|........ .....+.......+........++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 357999999999999999999985432111 11122233333333312344578899999999
Q ss_pred hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc-CHHHHH-HHHHHc---
Q 042687 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-AAEDAQ-ILAEKE--- 147 (217)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~-~~~~~~--- 147 (217)
.|.......+..+|++|+|+|+.+...... ...+..+... ++|+++++||+|+...+.. ..+++. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccccc-cccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 998888888999999999999987544332 3333444444 8889999999998732211 111222 333333
Q ss_pred ---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 148 ---GLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 148 ---~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
.++++++||.+|.|++++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 25799999999999999999998764
No 177
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=8.4e-21 Score=136.91 Aligned_cols=156 Identities=18% Similarity=0.155 Sum_probs=102.7
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc--------cchhhhhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR--------AITSAYYR 83 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 83 (217)
..+|+++|++|+|||||++++.+.................. .........+.+|||||..... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 47899999999999999999998765433222211111111 1222234578899999954322 22345578
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEecCCCCCCH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNV 162 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv 162 (217)
.+|++++|+|++++.. .....+...+... +.|+++|+||+|+........+....+....+ .+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 9999999999988621 1112233333332 68999999999987422222233344444443 68999999999999
Q ss_pred HHHHHHHHHH
Q 042687 163 EKAFQTILLD 172 (217)
Q Consensus 163 ~~~~~~l~~~ 172 (217)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999765
No 178
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=7.1e-21 Score=149.93 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=104.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhh--------ccchhhhhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY--------RAITSAYYR 83 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~ 83 (217)
.-.|+|+|.+|||||||+|+|++......+..+.++......+... ....+.++||||.... .......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3579999999999999999999987754433222222222222222 2257889999995321 222344678
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEecCCCCCCH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNV 162 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv 162 (217)
.+|++++|+|+++... .....++..+.. .+.|+++|+||+|+.............+....+ .+++++||+++.|+
T Consensus 84 ~~D~il~vvd~~~~~~-~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 84 DVDLVLFVVDADEKIG-PGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred cCCEEEEEEeCCCCCC-hhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 9999999999987322 111222333332 268999999999997422222334455555444 57999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 163 EKAFQTILLDI 173 (217)
Q Consensus 163 ~~~~~~l~~~~ 173 (217)
++++++|.+.+
T Consensus 160 ~~L~~~L~~~l 170 (292)
T PRK00089 160 DELLDVIAKYL 170 (292)
T ss_pred HHHHHHHHHhC
Confidence 99999998865
No 179
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=8.5e-21 Score=162.86 Aligned_cols=156 Identities=20% Similarity=0.245 Sum_probs=112.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCC--CcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKS--TIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
...+|+|+|+.++|||||+++|....+.....+ |.....+...+..++....+.+|||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 457999999999999999999998776544332 222233333444444557889999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHH-------HHHcC--CeEEEecCCCC
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQIL-------AEKEG--LSFLETSALEA 159 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~vSa~~~ 159 (217)
|+|+|+++....+..+.| ..+. ..++|++|++||+|+.... ..++... ...++ ++++++||++|
T Consensus 323 ILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 999999874333332222 2222 2379999999999986522 1222111 22233 68999999999
Q ss_pred CCHHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLDI 173 (217)
Q Consensus 160 ~gv~~~~~~l~~~~ 173 (217)
.|++++|++|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987753
No 180
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.5e-20 Score=136.65 Aligned_cols=155 Identities=24% Similarity=0.228 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCcccc-CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhh----------c-cchh
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY----------R-AITS 79 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~-~~~~ 79 (217)
.++|+++|.+|+|||||+++|.+..... ...++.+.......+..++. .+.+||+||.... . ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4799999999999999999999876432 22233233333344455554 4679999996422 1 0112
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHH-HHHHHHc----CCeEEEe
Q 042687 80 AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDA-QILAEKE----GLSFLET 154 (217)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~----~~~~~~v 154 (217)
..+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+........... ..+.... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 346789999999999987665443 23333332 2789999999999875431222222 2222333 3689999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 042687 155 SALEALNVEKAFQTILLD 172 (217)
Q Consensus 155 Sa~~~~gv~~~~~~l~~~ 172 (217)
||+++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998763
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=1.3e-20 Score=162.95 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=110.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
.....|+|+|+.++|||||+++|....+.....+..+.+.....+..++ ..++||||||++.|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 3557999999999999999999988776544433333333333444554 46789999999999999998999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc-CHHHHH---HHHHHcC--CeEEEecCCCCCCHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-AAEDAQ---ILAEKEG--LSFLETSALEALNVE 163 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~---~~~~~~~--~~~~~vSa~~~~gv~ 163 (217)
+|||+++....+..+.| .... ..++|++|++||+|+...... ...++. .++..++ ++++++||++|.|++
T Consensus 366 LVVdAddGv~~qT~e~i-~~a~---~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 366 LVVAADDGVMPQTIEAI-NHAK---AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EEEECCCCCCHhHHHHH-HHHH---hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 99999874322222222 2222 237999999999999642110 011111 1223333 689999999999999
Q ss_pred HHHHHHHH
Q 042687 164 KAFQTILL 171 (217)
Q Consensus 164 ~~~~~l~~ 171 (217)
++|++|..
T Consensus 442 eLle~I~~ 449 (787)
T PRK05306 442 ELLEAILL 449 (787)
T ss_pred HHHHhhhh
Confidence 99999875
No 182
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=1.5e-20 Score=142.87 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=109.7
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh--------hhccchhhhhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE--------RYRAITSAYYR 83 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~ 83 (217)
..-|+|+|.||||||||+|++++.+.+..+....++......+...+ ..++.++||||.. .+.......+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 35799999999999999999999999877665544444444443333 4578899999932 22233345578
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEecCCCCCCH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG-LSFLETSALEALNV 162 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv 162 (217)
.+|+++||+|+.+.... ..+..++.+.. ...|+++++||+|..............+..... ..++++||++|.|+
T Consensus 85 dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 85 DVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV 160 (298)
T ss_pred cCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence 99999999999874332 22233444444 268999999999986644321222333333333 37999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 163 EKAFQTILLDIY 174 (217)
Q Consensus 163 ~~~~~~l~~~~~ 174 (217)
+.+.+.+...+-
T Consensus 161 ~~L~~~i~~~Lp 172 (298)
T COG1159 161 DTLLEIIKEYLP 172 (298)
T ss_pred HHHHHHHHHhCC
Confidence 999998887653
No 183
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.86 E-value=2.5e-20 Score=139.13 Aligned_cols=117 Identities=24% Similarity=0.388 Sum_probs=86.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCC-cEEEEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA-VGALLVY 92 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~ii~v~ 92 (217)
+|+++|++|||||||+++|..+.+...+.++ ............+....+.+||+||+..++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998775544332 2222222222123456788999999999998888899998 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHhh---cCCCCeEEEEEeCCCCcc
Q 042687 93 DITKR-QTFDNVTRWLRELRDH---ADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 93 d~~~~-~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~Dl~~ 131 (217)
|+++. .++..+..|+..+... ...++|++|++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 5667765555443222 224899999999999843
No 184
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=2.6e-20 Score=158.41 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=112.6
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCcc--cc-----CC------CCCcceeeEEEE--EEE---CCeEEEEEEEecCChh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEF--CL-----ES------KSTIGVEFATRT--LQV---EGKTVKAQIWDTAGQE 72 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~--~~-----~~------~~t~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~ 72 (217)
..-+|+|+|+.++|||||+.+|+.... .. .. ..+.+.+..... +.+ ++..+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 446999999999999999999976321 10 00 011222232222 222 4557889999999999
Q ss_pred hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC---
Q 042687 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL--- 149 (217)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 149 (217)
.|...+..++..+|++|+|+|+++....+....|.... . .++|+++|+||+|+..... .....++....++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~---~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E---NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcc
Confidence 99999999999999999999999876555555554332 2 2789999999999864221 2223344444555
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 150 SFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 150 ~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
+++++||++|.|+++++++|.+.+-
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCc
Confidence 3899999999999999999988663
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=2.9e-20 Score=154.11 Aligned_cols=146 Identities=22% Similarity=0.195 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh--------hccchhhhhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER--------YRAITSAYYR 83 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 83 (217)
++|+|+|.+|||||||+|+|.+.... ....+..+.+.....+..++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987653 22233344455555566666 5788999999865 3333456678
Q ss_pred CCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCC
Q 042687 84 GAVGALLVYDITKRQTFD--NVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEAL 160 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~ 160 (217)
.+|++|+|+|+.++.+.. .+..|+. .. +.|+++|+||+|+.+. .....++ ...++ .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~~---~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---KS---NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998754332 2333433 22 7899999999996541 1222222 34565 48999999999
Q ss_pred CHHHHHHHHHH
Q 042687 161 NVEKAFQTILL 171 (217)
Q Consensus 161 gv~~~~~~l~~ 171 (217)
|++++|+++..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999987
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=2.1e-20 Score=133.66 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=102.8
Q ss_pred EEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc-------chhhhhcCCcEE
Q 042687 17 LIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-------ITSAYYRGAVGA 88 (217)
Q Consensus 17 i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~i 88 (217)
|+|+.|+|||||++++.+.... .....+.+............ ...+.+||+||...... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987654 22333322233333333221 35778999999765432 334577899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHH---HHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAE---DAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
++|+|+++........ +...... .+.|+++|+||+|+......... .........+++++++|++++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999877655543 3333332 38999999999998653322211 112233344678999999999999999
Q ss_pred HHHHHHH
Q 042687 166 FQTILLD 172 (217)
Q Consensus 166 ~~~l~~~ 172 (217)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999874
No 187
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=2.1e-20 Score=158.84 Aligned_cols=146 Identities=22% Similarity=0.249 Sum_probs=109.4
Q ss_pred cCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc------hhhhh--cCCcEEEE
Q 042687 19 GDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI------TSAYY--RGAVGALL 90 (217)
Q Consensus 19 G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~ii~ 90 (217)
|.+|||||||+|++.+........++.+.+.....+.+++. ++++|||||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999988765555566566666666666664 4689999998766543 23333 47899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
|+|+++.+.. ..+...+.+ .++|+++++||+|+.+.+... .+.+.+.+..+++++++||++|.|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999874322 222333333 389999999999986544443 356778888899999999999999999999998
Q ss_pred HHH
Q 042687 171 LDI 173 (217)
Q Consensus 171 ~~~ 173 (217)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=4.1e-20 Score=153.05 Aligned_cols=150 Identities=20% Similarity=0.202 Sum_probs=106.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcccc-CCCCCcceeeEEEEEEECCeEEEEEEEecCCh--------hhhccchhhhhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ--------ERYRAITSAYYRG 84 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~ 84 (217)
+|+|+|.+|||||||+|+|.+..... ...+..+.+........++. .+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876532 22233444455555555654 5789999995 3445556677899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCHH
Q 042687 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNVE 163 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~ 163 (217)
+|++++|+|+.+..+... ..+...++.. ++|+++|+||+|+...... ..+ ...++. +++++||.+|.|++
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 999999999987543332 1223333332 7899999999998653321 112 234566 79999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 164 KAFQTILLDIY 174 (217)
Q Consensus 164 ~~~~~l~~~~~ 174 (217)
++++++.+.+.
T Consensus 150 ~ll~~i~~~l~ 160 (429)
T TIGR03594 150 DLLDAILELLP 160 (429)
T ss_pred HHHHHHHHhcC
Confidence 99999987663
No 189
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.9e-21 Score=133.02 Aligned_cols=159 Identities=21% Similarity=0.354 Sum_probs=119.7
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCcc------c-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEF------C-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~------~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (217)
.+.|+|+|..++|||||+.++..... + ....+|.+..... +.++ ...+.+||..|++..+++|..|+..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~--i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT--IEVC--NAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc--eeec--cceeEEEEcCChHHHHHHHHHHHHH
Confidence 37899999999999999998754321 1 1223454444433 3344 3467899999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHHHHHH------HcCCeEEEecCC
Q 042687 85 AVGALLVYDITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQILAE------KEGLSFLETSAL 157 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~vSa~ 157 (217)
++++|+++|+++++.++.....+..+... .-.++|+++.+||.|+.+. ...++++.... +...++.++||.
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 99999999999999888876655554333 3358999999999998752 23344443332 234679999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 042687 158 EALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 158 ~~~gv~~~~~~l~~~~~~~ 176 (217)
+|.|+++-.+|++..+.+.
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999877553
No 190
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=2.1e-19 Score=156.20 Aligned_cols=153 Identities=17% Similarity=0.157 Sum_probs=110.8
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc----------hhhh
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI----------TSAY 81 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~ 81 (217)
.++|+++|++|||||||+|+|.+........+..+.+..... +.....++.++|+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 378999999999999999999987654333333333333333 3444457789999997655321 1223
Q ss_pred h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCC
Q 042687 82 Y--RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEA 159 (217)
Q Consensus 82 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 159 (217)
+ ..+|++++|+|+++.+.. ..|...+.+. ++|+++++||+|+.+.+.. ..+.+.+.+.++++++++|+.++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2 479999999999885542 2344444443 8999999999998754444 34667788889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLDI 173 (217)
Q Consensus 160 ~gv~~~~~~l~~~~ 173 (217)
.|++++.+.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999887653
No 191
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.83 E-value=6.5e-19 Score=134.03 Aligned_cols=151 Identities=26% Similarity=0.269 Sum_probs=102.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc-------cchhhhhcCCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR-------AITSAYYRGAV 86 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 86 (217)
+|+++|++|||||||+++|.+........+..+.+.....+.+++ ..+++||+||..... .....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998764322222223344455555665 467899999964322 12345789999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHHH-----------------------------------------Hhh-----------
Q 042687 87 GALLVYDITKRQ-TFDNVTRWLREL-----------------------------------------RDH----------- 113 (217)
Q Consensus 87 ~ii~v~d~~~~~-s~~~~~~~~~~i-----------------------------------------~~~----------- 113 (217)
++++|+|+++++ ..+.+...+..+ .+.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 333333333211 000
Q ss_pred -----------c--CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 114 -----------A--DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 114 -----------~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
. ..-+|+++|+||+|+.. .++...++.. .+++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 01268999999999864 3344445443 4689999999999999999998754
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=3.1e-19 Score=155.35 Aligned_cols=157 Identities=18% Similarity=0.210 Sum_probs=109.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChh----------hhccc-h
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----------RYRAI-T 78 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~ 78 (217)
..++|+|+|.+|||||||+|+|.+.... ....++++.+.....+.+++.. +.+|||||.. .+..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999998753 2223333445555556666654 5599999953 12221 1
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHH-HHHH----cCCeEEE
Q 042687 79 SAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQI-LAEK----EGLSFLE 153 (217)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~ 153 (217)
..+++.+|++|+|+|+++..+..... ++..+.. .++|+++|+||+|+.+... .+.... +... ...++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 23468999999999999887766654 3344433 3799999999999965221 112221 1111 1357899
Q ss_pred ecCCCCCCHHHHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
+||++|.|++++|+.+.+.+.+
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987755
No 193
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.83 E-value=2.6e-19 Score=129.45 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=99.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh----------hhccchhhhhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----------RYRAITSAYYR 83 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~ 83 (217)
.|+++|.+|+|||||++.+.++.+.....++.+.+.....+..++ .+.+||+||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996665555555544444444444444 77899999942 23444444443
Q ss_pred ---CCcEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC--HHHHHHHHH--HcCCeEEEe
Q 042687 84 ---GAVGALLVYDITKRQT--FDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA--AEDAQILAE--KEGLSFLET 154 (217)
Q Consensus 84 ---~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~--~~~~~~~~v 154 (217)
+++++++++|..+... ...+..|+. .. +.|+++++||+|+....... ......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLE---EL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHH---Hc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 4678899999876532 222333433 22 68999999999985422211 112222222 334689999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 042687 155 SALEALNVEKAFQTILLD 172 (217)
Q Consensus 155 Sa~~~~gv~~~~~~l~~~ 172 (217)
|++++.|+.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=2.5e-19 Score=148.59 Aligned_cols=158 Identities=24% Similarity=0.223 Sum_probs=106.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhh----------ccc-h
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY----------RAI-T 78 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~-~ 78 (217)
..++|+|+|.+|+|||||+++|++.... ....++.+.+.....+..++. .+.+|||||.... ... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 4699999999999999999999976533 222333333443444445553 4679999995321 111 1
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHH----HcCCeEEEe
Q 042687 79 SAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAE----KEGLSFLET 154 (217)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~v 154 (217)
..++..+|++|+|+|++++.+.... .++..+... ++|+++++||+|+.+.... .+....+.. ...++++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~~---~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALEA---GRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHHc---CCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEEE
Confidence 2467899999999999987665554 333333332 7899999999998742211 111111211 224789999
Q ss_pred cCCCCCCHHHHHHHHHHHHHH
Q 042687 155 SALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 155 Sa~~~~gv~~~~~~l~~~~~~ 175 (217)
||++|.|++++++.+.+...+
T Consensus 325 SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 325 SALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876543
No 195
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=7e-19 Score=124.33 Aligned_cols=156 Identities=24% Similarity=0.385 Sum_probs=116.4
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc--------cCCCC--CcceeeEEEEEEECCeEEEEEEEecCChhhhccchhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC--------LESKS--TIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 80 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~--------~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (217)
...||+|.|+.++||||+++++...... ..+.. +.++........+++ ...+.+++||||++|.-+|..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~~ 87 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWEI 87 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHHH
Confidence 4579999999999999999999876531 11111 111222222233333 135779999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHc--CCeEEEecCCC
Q 042687 81 YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKE--GLSFLETSALE 158 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~vSa~~ 158 (217)
+++++.++|+++|.+++..+ ..++.+..+.... .+|++|+.||.|+...+ ..+.+.++.... .+++++.+|.+
T Consensus 88 l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~~a~e 162 (187)
T COG2229 88 LSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEIDATE 162 (187)
T ss_pred HhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeeeeccc
Confidence 99999999999999998887 5566666665553 29999999999998633 355666555444 78999999999
Q ss_pred CCCHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLD 172 (217)
Q Consensus 159 ~~gv~~~~~~l~~~ 172 (217)
+++..+.++.+..+
T Consensus 163 ~~~~~~~L~~ll~~ 176 (187)
T COG2229 163 GEGARDQLDVLLLK 176 (187)
T ss_pred chhHHHHHHHHHhh
Confidence 99999988887665
No 196
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.83 E-value=9.8e-20 Score=122.77 Aligned_cols=157 Identities=24% Similarity=0.369 Sum_probs=118.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
....+||+++|-.++|||||+..|..... ....+|.+ +..+.+.+++ .+++++||.+|+...+..|..|+.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceE
Confidence 35679999999999999999999976543 33345544 5566666654 36899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHH-hhcCCCCeEEEEEeCCCCccccccCHHHHHH-----HHHHcCCeEEEecCCCCCCH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELR-DHADSNIVIMMAGNKSDLNHLRAVAAEDAQI-----LAEKEGLSFLETSALEALNV 162 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~vSa~~~~gv 162 (217)
|+|+|.+|..-++++...+-++. +.....+|++|.+||.|+.-...+ +++.. ..+..-+.+-++|+.++.|+
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~--eeia~klnl~~lrdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV--EEIALKLNLAGLRDRSWHIQECSALSLEGS 167 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch--HHHHHhcchhhhhhceEEeeeCccccccCc
Confidence 99999999988888855554443 334468999999999998542222 12111 11122356788999999999
Q ss_pred HHHHHHHHH
Q 042687 163 EKAFQTILL 171 (217)
Q Consensus 163 ~~~~~~l~~ 171 (217)
.+..+|+..
T Consensus 168 ~dg~~wv~s 176 (185)
T KOG0074|consen 168 TDGSDWVQS 176 (185)
T ss_pred cCcchhhhc
Confidence 999998865
No 197
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=3.2e-19 Score=150.76 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCC----CcceeeEEEEEEE------------CCeEEEEEEEecCChhhhcc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKS----TIGVEFATRTLQV------------EGKTVKAQIWDTAGQERYRA 76 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~----t~~~~~~~~~~~~------------~~~~~~~~i~D~~G~~~~~~ 76 (217)
.-|+++|++++|||||+++|.+..+...... +.+..+....... ......+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 4699999999999999999998766433222 1122221111100 00011378999999999999
Q ss_pred chhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc------------CHHH--
Q 042687 77 ITSAYYRGAVGALLVYDITK---RQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV------------AAED-- 139 (217)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~------------~~~~-- 139 (217)
++..++..+|++++|||+++ +++++.+. .+.. .++|+++++||+|+...+.. ....
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 99999999999999999987 44444332 2222 27899999999998642110 0000
Q ss_pred ----------HHHHHH------------Hc--CCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 140 ----------AQILAE------------KE--GLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 140 ----------~~~~~~------------~~--~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
..++.. .+ .++++++||++|.|+++++.+|....
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 011111 11 36899999999999999999887654
No 198
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=2.3e-19 Score=156.22 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=104.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCcccc-CCCCCcceeeEEEEEEECCeEEEEEEEecCChhh--------hccchhhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER--------YRAITSAY 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 81 (217)
...+|+|+|.+|||||||+|+|++..... ...++.+.+........++ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 45789999999999999999999876532 2223333333333334444 4677999999652 33444567
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
+..+|++|+|+|+++...... ..|...+.. .++|+++|+||+|+.... ......+....+ ..+++||++|.|
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~G 423 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGRG 423 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCCC
Confidence 889999999999976422111 244444543 389999999999985421 111222222222 467999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIY 174 (217)
Q Consensus 162 v~~~~~~l~~~~~ 174 (217)
++++|++|++.+.
T Consensus 424 I~eLl~~i~~~l~ 436 (712)
T PRK09518 424 VGDLLDEALDSLK 436 (712)
T ss_pred chHHHHHHHHhcc
Confidence 9999999998764
No 199
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=1.1e-19 Score=125.70 Aligned_cols=135 Identities=24% Similarity=0.284 Sum_probs=97.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCC----hhhhccchhhhhcCCcEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG----QERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~ii 89 (217)
||+++|+.|||||||+++|.+... .+..|....+. + .++|||| +..+.........+||+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999988654 33344332221 1 2799999 3444444455567999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNVEKAFQT 168 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~~~~~ 168 (217)
++.|++++.+.-. ..+.... ..|++-|+||+|+.. .....+.++++.+..|+ ++|++|+.+|.|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhccc--CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998654221 1111111 689999999999984 22345667788888887 5899999999999999998
Q ss_pred HH
Q 042687 169 IL 170 (217)
Q Consensus 169 l~ 170 (217)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 200
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=2.9e-19 Score=142.97 Aligned_cols=150 Identities=20% Similarity=0.183 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCC-CCCcceeeEEEEEEECCeEEEEEEEecCChhh---------hccchhhhh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQER---------YRAITSAYY 82 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 82 (217)
..|+|+|.||||||||.|||++...+... .+.++.+..+......+.. +.++||+|.+. ........+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999998887443 3556666666666666654 78999999542 223345567
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCC
Q 042687 83 RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALN 161 (217)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~g 161 (217)
..||++|||+|....-+.++ +.....++. .++|+++|+||+|-.. .++...-.-.+|. +.+.+||.+|.|
T Consensus 82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr~---~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGITPAD-EEIAKILRR---SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccC
Confidence 89999999999976433222 122222332 2799999999999642 2222222223454 789999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDI 173 (217)
Q Consensus 162 v~~~~~~l~~~~ 173 (217)
+.++.+.+++.+
T Consensus 153 i~dLld~v~~~l 164 (444)
T COG1160 153 IGDLLDAVLELL 164 (444)
T ss_pred HHHHHHHHHhhc
Confidence 999999999876
No 201
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=2.6e-22 Score=141.26 Aligned_cols=167 Identities=33% Similarity=0.618 Sum_probs=143.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECC-eEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG-KTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
.++.++++|+|..|+|||+++.+++...++..|..|++.++.-.....+. ..+++++||+.|++++..+..-|++.+.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 46789999999999999999999999999999999999888776665544 34578899999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc----CCCCeEEEEEeCCCCccccccC-HHHHHHHHHHcCC-eEEEecCCCCCC
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHA----DSNIVIMMAGNKSDLNHLRAVA-AEDAQILAEKEGL-SFLETSALEALN 161 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~vSa~~~~g 161 (217)
.++|||+++.-.|+.+..|.+.+.... +..+|+++.+||||........ ......+.++.|+ ..+++|++.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 999999999999999999999876543 2467889999999987643322 3567788888886 699999999999
Q ss_pred HHHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIYH 175 (217)
Q Consensus 162 v~~~~~~l~~~~~~ 175 (217)
++++.+.++++++-
T Consensus 182 i~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 182 IPEAQRELVEKILV 195 (229)
T ss_pred hhHHHHHHHHHHHh
Confidence 99999999998754
No 202
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.4e-20 Score=126.04 Aligned_cols=158 Identities=22% Similarity=0.348 Sum_probs=118.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
+...+|+++|-.|+||||++.++.-++. ....||.+.+... +.+ ...++++||..|+...+..|+-|+.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~--v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVET--VPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccc--ccc--ccccceeeEccCcccccHHHHHHhcccceEE
Confidence 3668999999999999999999876665 3444665544433 223 5578899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHH-----HHHHcCCeEEEecCCCCCCHH
Q 042687 90 LVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQI-----LAEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~vSa~~~~gv~ 163 (217)
+|+|.+|++...... +++..+.+..-.+..+++++||.|....- ...|+.. -.+..-+.+|++||.+|.|++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 999999987666553 34444544444578889999999986522 1222211 122233789999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 164 KAFQTILLDIY 174 (217)
Q Consensus 164 ~~~~~l~~~~~ 174 (217)
..++||.+-+.
T Consensus 169 ~~~DWL~~~l~ 179 (182)
T KOG0072|consen 169 PAMDWLQRPLK 179 (182)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=2.9e-19 Score=147.53 Aligned_cols=154 Identities=19% Similarity=0.173 Sum_probs=102.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC--cccc-----------------------------CCCCCcceeeEEEEEEECC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN--EFCL-----------------------------ESKSTIGVEFATRTLQVEG 58 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 58 (217)
.+.++|+++|+.++|||||+.+|+.. .... +.....+.+.....+ ..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~--~~ 82 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF--ET 82 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE--cc
Confidence 35599999999999999999999752 1110 011233333333333 33
Q ss_pred eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCccccc--
Q 042687 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN--VTRWLRELRDHADSNIVIMMAGNKSDLNHLRA-- 134 (217)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-- 134 (217)
..+.+.+||+||++.|.......+..+|++|+|+|+++.++... ...++. +..... ..|++|++||+|+.+...
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~-~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG-INQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC-CCeEEEEEEChhccCccHHH
Confidence 44678899999999887777777889999999999998743211 111222 222222 357999999999964211
Q ss_pred --cCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Q 042687 135 --VAAEDAQILAEKEG-----LSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 135 --~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~~~~ 167 (217)
....++..++...+ ++++++||++|.|+++.+.
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 11345566666655 5799999999999987553
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=3e-19 Score=151.48 Aligned_cols=156 Identities=16% Similarity=0.230 Sum_probs=109.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC--ccccCC------------CCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchh
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN--EFCLES------------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITS 79 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~--~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (217)
+|+|+|+.++|||||+++|+.. .+.... ....+.+.......+.+..+++++|||||+..|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 221111 11123334333333444457888999999999998899
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc-CHHHHHHHHH-------HcCCeE
Q 042687 80 AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-AAEDAQILAE-------KEGLSF 151 (217)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~ 151 (217)
.++..+|++++|+|+.+.. ......|+..+... ++|+++++||+|+...+.. ...++..+.. ...+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999998643 23334555555543 7899999999998653321 1223333332 235789
Q ss_pred EEecCCCCC----------CHHHHHHHHHHHH
Q 042687 152 LETSALEAL----------NVEKAFQTILLDI 173 (217)
Q Consensus 152 ~~vSa~~~~----------gv~~~~~~l~~~~ 173 (217)
+.+||++|. |+..+|+.|++.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999996 7888988888765
No 205
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.82 E-value=2.2e-19 Score=148.20 Aligned_cols=154 Identities=20% Similarity=0.206 Sum_probs=99.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCcccc-------------------------------CCCCCcceeeEEEEEEECC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL-------------------------------ESKSTIGVEFATRTLQVEG 58 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 58 (217)
.+.++|+++|++++|||||+++|+...... +..+..+.+.... .+..
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~~~ 81 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KFET 81 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EEec
Confidence 355999999999999999999998432110 0112222233333 3334
Q ss_pred eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEeCCCCccccc---
Q 042687 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN-VTRWLRELRDHADSNIVIMMAGNKSDLNHLRA--- 134 (217)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--- 134 (217)
..+.+.+|||||++.|.......+..+|++|+|+|+++...+.. ...++..+... . ..|+++++||+|+.....
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHH
Confidence 45678899999998876666566789999999999987211111 12222223222 1 246899999999864211
Q ss_pred -cCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Q 042687 135 -VAAEDAQILAEKEG-----LSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 135 -~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~~~~ 167 (217)
...+++..+....+ ++++++||++|.|+++.+.
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11234555555554 5799999999999987553
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=4.1e-19 Score=145.44 Aligned_cols=162 Identities=21% Similarity=0.184 Sum_probs=102.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccc---cCCC--CCcceeeEEEEE----------------EEC--C----eEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFC---LESK--STIGVEFATRTL----------------QVE--G----KTV 61 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~---~~~~--~t~~~~~~~~~~----------------~~~--~----~~~ 61 (217)
..+.++|+++|+.++|||||+.+|.+...+ .+.. .|....+....+ .++ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 445699999999999999999999653111 1111 111111100000 001 0 125
Q ss_pred EEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC--HH
Q 042687 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ-TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA--AE 138 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~ 138 (217)
.+++|||||++.|..........+|++++|+|++++. ..+.... +..+... . ..|+++|+||+|+.+..... .+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~-~-i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDII-G-IKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHc-C-CCcEEEEEEeeccccchhHHHHHH
Confidence 7889999999988776666677889999999998643 2222222 2222222 1 24689999999986532211 23
Q ss_pred HHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 139 DAQILAEKE---GLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 139 ~~~~~~~~~---~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
++..+.... +++++++||++|.|+++++++|.+.+
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 344444332 47899999999999999999987754
No 207
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=1.8e-18 Score=128.03 Aligned_cols=148 Identities=20% Similarity=0.187 Sum_probs=97.5
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccc---------c--C---CCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFC---------L--E---SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI 77 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~---------~--~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (217)
.++|+++|+.++|||||+++|+..... . + .....+.+.......+......+.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 489999999999999999999753110 0 0 0011223333333344444457789999999888777
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCcccccc---CHHHHHHHHHHcC-----
Q 042687 78 TSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV---AAEDAQILAEKEG----- 148 (217)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~----- 148 (217)
....+..+|++++|+|+........ ..++..+... ++| +++++||+|+...... ...++..+....+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 7788899999999999976433222 2333344433 666 7789999998532221 1234555555443
Q ss_pred CeEEEecCCCCCCHH
Q 042687 149 LSFLETSALEALNVE 163 (217)
Q Consensus 149 ~~~~~vSa~~~~gv~ 163 (217)
++++++||.+|.+..
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 689999999998853
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=1.1e-18 Score=148.04 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=110.9
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc--CccccCC------------CCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR--NEFCLES------------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI 77 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (217)
..+|+|+|+.++|||||+++|+. +.+.... ..+.+.+.......+....+++++|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46999999999999999999986 3332211 123445555555555556678999999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC-HHHHHHHHH-------HcCC
Q 042687 78 TSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA-AEDAQILAE-------KEGL 149 (217)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~-------~~~~ 149 (217)
+..+++.+|++|+|+|+.+....+. ..++..+... ++|.++++||+|+...+... .+++..+.. ...+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~---gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY---GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc---CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 9999999999999999987533332 2333333332 78999999999986532211 123333322 2347
Q ss_pred eEEEecCCCCC----------CHHHHHHHHHHHH
Q 042687 150 SFLETSALEAL----------NVEKAFQTILLDI 173 (217)
Q Consensus 150 ~~~~vSa~~~~----------gv~~~~~~l~~~~ 173 (217)
|++.+||.+|. |+..+++.|++.+
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 89999999998 5777777776655
No 209
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.7e-18 Score=125.01 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=114.6
Q ss_pred CCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCC----------hhh
Q 042687 4 KVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG----------QER 73 (217)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~ 73 (217)
+.+-+.+...-|+++|.+|||||||||+|++.+-......|+|.+....-+.+++. +.++|.|| .+.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~ 92 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEK 92 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHH
Confidence 34445667789999999999999999999997755555666677777777777774 66999999 345
Q ss_pred hccchhhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHH----
Q 042687 74 YRAITSAYYR---GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK---- 146 (217)
Q Consensus 74 ~~~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---- 146 (217)
+..+...|+. +-.++++++|+..+....+. ++++.+... ++|++|++||+|.....+.. ......+..
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~ 167 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKKSERN-KQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCChhHHH-HHHHHHHHHhcCC
Confidence 5566666664 45788899999765433221 333334443 89999999999987633322 122222322
Q ss_pred cCCe--EEEecCCCCCCHHHHHHHHHHHHHH
Q 042687 147 EGLS--FLETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 147 ~~~~--~~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
.... ++..|+.++.|++++...|.+.+.+
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2233 7788999999999999988876643
No 210
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=2.6e-19 Score=134.30 Aligned_cols=147 Identities=25% Similarity=0.228 Sum_probs=93.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccC-------------------------------CCCCcceeeEEEEEEECCeEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLE-------------------------------SKSTIGVEFATRTLQVEGKTVK 62 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~~~~~~~~~~ 62 (217)
||+|+|++|+|||||+++|+...-... ..+..+.+.....+..+ ...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence 689999999999999999975332111 00111222222223233 346
Q ss_pred EEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc----CHH
Q 042687 63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV----AAE 138 (217)
Q Consensus 63 ~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~ 138 (217)
+.+|||||++.|.......+..+|++|+|+|+++...... ......+... . ..++++|+||+|+...... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 7799999998887666777899999999999987532222 1222222222 1 2457789999998642211 123
Q ss_pred HHHHHHHHcC---CeEEEecCCCCCCHHHH
Q 042687 139 DAQILAEKEG---LSFLETSALEALNVEKA 165 (217)
Q Consensus 139 ~~~~~~~~~~---~~~~~vSa~~~~gv~~~ 165 (217)
++..+....+ .+++++||++|.|+++.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 4455555666 45999999999998753
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.81 E-value=4.4e-19 Score=145.30 Aligned_cols=161 Identities=20% Similarity=0.140 Sum_probs=104.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCcccc---CCC--CCcceeeEE----------------EEEEECC------eEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL---ESK--STIGVEFAT----------------RTLQVEG------KTVKA 63 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~---~~~--~t~~~~~~~----------------~~~~~~~------~~~~~ 63 (217)
+.++|+++|+.++|||||+++|.+..... +.. .|....+.. ....+++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999996532211 110 111111100 0000011 13578
Q ss_pred EEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc--CHHHHH
Q 042687 64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--AAEDAQ 141 (217)
Q Consensus 64 ~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~ 141 (217)
.+||+||++.|...+...+..+|++++|+|+++........+.+..+... . ..|+++++||+|+.+.... ...++.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g-i~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G-IKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C-CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 89999999999888888888999999999998643111222223333222 1 3468999999998653221 123344
Q ss_pred HHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 142 ILAEKE---GLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 142 ~~~~~~---~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
.+.... +++++++||++|.|+++++++|...+
T Consensus 161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 444433 57899999999999999999997754
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=1.5e-18 Score=147.99 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=105.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC---ccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN---EFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
-|+++|+.++|||||+++|.+. .+..+.....+.+.....+...+ ...+.+||+||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 5899999999999999999863 33333333333343333333322 2347899999999998777778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccccccC--HHHHHHHHHHcC---CeEEEecCCCCCCHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRAVA--AEDAQILAEKEG---LSFLETSALEALNVEK 164 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~~vSa~~~~gv~~ 164 (217)
|+|+.+....+. .+.+..+... ++| ++||+||+|+.+..... .+++..+....+ ++++++||++|.|+++
T Consensus 81 VVda~eg~~~qT-~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVMAQT-REHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 999987322222 2222333322 455 57999999996532221 234455554444 6899999999999999
Q ss_pred HHHHHHHHH
Q 042687 165 AFQTILLDI 173 (217)
Q Consensus 165 ~~~~l~~~~ 173 (217)
++++|.+..
T Consensus 157 L~~~L~~~~ 165 (614)
T PRK10512 157 LREHLLQLP 165 (614)
T ss_pred HHHHHHHhh
Confidence 999987654
No 213
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=139.18 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=112.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCC-CCcceeeEEEEEEECCeEEEEEEEecCChhhhccc--------hhhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI--------TSAY 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 81 (217)
..++|+|+|.||||||||+|.|.+...+..++ +.++.+.-...+.++|.+ +.++||+|..+.... ....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHH
Confidence 45899999999999999999999988775543 666677777778888854 569999995432222 2345
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
+..||.+++|+|.+.+.+-... ..+. ....+.|+++|.||.|+....... ......+.+++.+|++++.|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELE-----SEKLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccc-----hhhccCCCceEEEEecCccC
Confidence 7899999999999985322221 1111 334479999999999997644321 11122344799999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIYHI 176 (217)
Q Consensus 162 v~~~~~~l~~~~~~~ 176 (217)
++.+.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999998877554
No 214
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=1.8e-18 Score=131.82 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCC----------------CCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLES----------------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI 77 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (217)
+|+++|+.|+|||||+++|+........ ....+.+.......+.....++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999763211100 011122222223333344567889999999998888
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 78 TSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
+..+++.+|++++|+|+++.... ....++..+... ++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence 88999999999999999876443 334455555443 78999999999984
No 215
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.80 E-value=4.2e-18 Score=144.50 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCC----CcceeeEEEEEE--ECCeE-----E-----EEEEEecCChhhhcc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKS----TIGVEFATRTLQ--VEGKT-----V-----KAQIWDTAGQERYRA 76 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~----t~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~G~~~~~~ 76 (217)
..|+++|+.++|||||+++|.+......... +.+..+...... ..+.. . .+.+|||||++.|..
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 86 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN 86 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence 5799999999999999999987654322221 222111111100 00111 1 167999999999999
Q ss_pred chhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc--C--------------H
Q 042687 77 ITSAYYRGAVGALLVYDITK---RQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--A--------------A 137 (217)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~--------------~ 137 (217)
++...+..+|++|+|+|+++ +++++.+. .+.. .++|+++++||+|+...+.. . .
T Consensus 87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~ 159 (586)
T PRK04004 87 LRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQ 159 (586)
T ss_pred HHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHH
Confidence 88888899999999999987 45554432 2222 27899999999998531110 0 0
Q ss_pred H-------HHHHHHHH---------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 138 E-------DAQILAEK---------------EGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 138 ~-------~~~~~~~~---------------~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
+ +....... ..++++++||++|.|++++++.+...+
T Consensus 160 ~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 160 QELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0 01111111 126799999999999999998876543
No 216
>PRK12736 elongation factor Tu; Reviewed
Probab=99.80 E-value=3.3e-18 Score=139.62 Aligned_cols=155 Identities=19% Similarity=0.141 Sum_probs=100.4
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCcccc--------------CCCCCcceeeEEEEEEECCeEEEEEEE
Q 042687 1 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL--------------ESKSTIGVEFATRTLQVEGKTVKAQIW 66 (217)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~ 66 (217)
|+........+.++|+++|+.++|||||+++|++..... ......+.+.......+......+.++
T Consensus 1 ~~~~~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~i 80 (394)
T PRK12736 1 MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHV 80 (394)
T ss_pred CchhhhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEE
Confidence 344444555677999999999999999999997631100 000112223333333443344567899
Q ss_pred ecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccccccC---HHHHHH
Q 042687 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRAVA---AEDAQI 142 (217)
Q Consensus 67 D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~ 142 (217)
||||++.|.......+..+|++++|+|+.+...... .+++..+... ++| +++++||+|+.+..... ..++..
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~ 156 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRE 156 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence 999999887777777789999999999986432222 2233333333 677 67889999986422221 234555
Q ss_pred HHHHcC-----CeEEEecCCCC
Q 042687 143 LAEKEG-----LSFLETSALEA 159 (217)
Q Consensus 143 ~~~~~~-----~~~~~vSa~~~ 159 (217)
+....+ ++++++||++|
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKA 178 (394)
T ss_pred HHHHhCCCcCCccEEEeecccc
Confidence 555554 58999999998
No 217
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=1.7e-18 Score=130.37 Aligned_cols=113 Identities=23% Similarity=0.311 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCC-----------------CCCcceeeEE--EEEEE---CCeEEEEEEEecCCh
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLES-----------------KSTIGVEFAT--RTLQV---EGKTVKAQIWDTAGQ 71 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~-----------------~~t~~~~~~~--~~~~~---~~~~~~~~i~D~~G~ 71 (217)
+|+|+|+.++|||||+++|+........ ....+.+... ..+.. ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875443210 0011111111 11211 345678999999999
Q ss_pred hhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
..+......++..+|++|+|+|+++..+... ..++..... .++|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9988888888999999999999987655433 344444332 268999999999974
No 218
>CHL00071 tufA elongation factor Tu
Probab=99.79 E-value=5e-18 Score=139.22 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=105.7
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccC--------------CCCCcceeeEEEEEEECCeEEEEEEE
Q 042687 1 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLE--------------SKSTIGVEFATRTLQVEGKTVKAQIW 66 (217)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~ 66 (217)
|++...++..+.++|+++|++++|||||+++|++...... .....+.+.......+.....++.++
T Consensus 1 ~~~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~i 80 (409)
T CHL00071 1 MAREKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHV 80 (409)
T ss_pred CchhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEE
Confidence 6777788888889999999999999999999986421100 00112222322223333334567799
Q ss_pred ecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCcccccc---CHHHHHH
Q 042687 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV---AAEDAQI 142 (217)
Q Consensus 67 D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~ 142 (217)
||||+..|.......+..+|++++|+|+.....-+. ..++..+... ++| +++++||+|+.+.... ...++..
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~ 156 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRE 156 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 999998887777777889999999999986432222 2333333333 678 7789999998653221 1234555
Q ss_pred HHHHcC-----CeEEEecCCCCCCH
Q 042687 143 LAEKEG-----LSFLETSALEALNV 162 (217)
Q Consensus 143 ~~~~~~-----~~~~~vSa~~~~gv 162 (217)
+....+ ++++++||.+|.++
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 157 LLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHhCCCCCcceEEEcchhhcccc
Confidence 555543 68999999998754
No 219
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=9.8e-18 Score=134.29 Aligned_cols=158 Identities=23% Similarity=0.194 Sum_probs=112.4
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCC-CCCcceeeEEEEEEECCeEEEEEEEecCChhh---------hccc--h
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQER---------YRAI--T 78 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~--~ 78 (217)
..+||+|+|.||+|||||+|+|++..-...+ .+.++.+-....+..+++. +.++||+|-.. +.+. .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 4599999999999999999999998766443 3445556666677777765 45999999322 1111 1
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHH----HHHHHHcC-CeEEE
Q 042687 79 SAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDA----QILAEKEG-LSFLE 153 (217)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~----~~~~~~~~-~~~~~ 153 (217)
...+..+|++++|+|++.+-+.++. .....+.+. +.+++|++||.|+.+......++. .......+ ++++.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~---g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEEA---GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc---CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 3346789999999999987665543 334444444 889999999999876433333333 22222333 68999
Q ss_pred ecCCCCCCHHHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~~~ 174 (217)
+||+++.|++++|+.+.....
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEecCCCChHHHHHHHHHHHH
Confidence 999999999999999887443
No 220
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=2.5e-18 Score=129.87 Aligned_cols=148 Identities=20% Similarity=0.144 Sum_probs=91.8
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccc---------------------------cCCC--CCcceeeEEEEEEECCeEEEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFC---------------------------LESK--STIGVEFATRTLQVEGKTVKAQ 64 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~---------------------------~~~~--~t~~~~~~~~~~~~~~~~~~~~ 64 (217)
+|+++|+.++|||||+.+|+..... +... ...+.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999998642110 0000 1112222222223333346788
Q ss_pred EEecCChhhhccchhhhhcCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccc--ccc
Q 042687 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ-------TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL--RAV 135 (217)
Q Consensus 65 i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~ 135 (217)
+|||||+..+...+...+..+|++|+|+|+++.. ..+....+ ...... . ..|+++++||+|+... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL-G-VKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc-C-CCeEEEEEEccccccccccHH
Confidence 9999999888777777788999999999998742 11222222 222222 1 3689999999998731 111
Q ss_pred C----HHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 042687 136 A----AEDAQILAEKEG-----LSFLETSALEALNVEK 164 (217)
Q Consensus 136 ~----~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~ 164 (217)
. ..++..+....+ ++++++||++|.|+++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 1 122333344433 6799999999999873
No 221
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=6.4e-18 Score=138.09 Aligned_cols=156 Identities=19% Similarity=0.129 Sum_probs=101.5
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccc------------cC--CCCCcceeeEEEEEEECCeEEEEEEE
Q 042687 1 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFC------------LE--SKSTIGVEFATRTLQVEGKTVKAQIW 66 (217)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~------------~~--~~~t~~~~~~~~~~~~~~~~~~~~i~ 66 (217)
|+.....+..+.++|+++|+.++|||||+++|.+.... +. .....+.+.....+.+......+.+|
T Consensus 1 ~~~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~li 80 (394)
T TIGR00485 1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHV 80 (394)
T ss_pred CchhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEE
Confidence 44444455667899999999999999999999742100 00 00112223333334444445678899
Q ss_pred ecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCccccccC---HHHHHH
Q 042687 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVA---AEDAQI 142 (217)
Q Consensus 67 D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~ 142 (217)
||||++.|.......+..+|++++|+|+.+....... +++..+... ++|.+ +++||+|+.+..... ..++..
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~ 156 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRE 156 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHH
Confidence 9999998877776677889999999999874322222 233333333 66755 689999986532211 234666
Q ss_pred HHHHcC-----CeEEEecCCCCC
Q 042687 143 LAEKEG-----LSFLETSALEAL 160 (217)
Q Consensus 143 ~~~~~~-----~~~~~vSa~~~~ 160 (217)
+....+ ++++++||.++.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 157 LLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHhcCCCccCccEEECcccccc
Confidence 666654 789999999874
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=99.78 E-value=7.3e-18 Score=137.72 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=98.8
Q ss_pred CCCCCCceeeEEEEEcCCCCCHHHHHhHHhcC-------ccc-----cC--CCCCcceeeEEEEEEECCeEEEEEEEecC
Q 042687 4 KVDHEYDYLFKIVLIGDSGVGKSNILSRFTRN-------EFC-----LE--SKSTIGVEFATRTLQVEGKTVKAQIWDTA 69 (217)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~-------~~~-----~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (217)
.......+.++|+++|+.++|||||+++|++. .+. +. .....+.+.......+......+.++|||
T Consensus 4 ~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtP 83 (396)
T PRK12735 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCP 83 (396)
T ss_pred hhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECC
Confidence 33445567799999999999999999999862 100 00 00112222222333343334567899999
Q ss_pred ChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCcccccc---CHHHHHHHHH
Q 042687 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAV---AAEDAQILAE 145 (217)
Q Consensus 70 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~ 145 (217)
|++.|.......+..+|++++|+|+.+...... .+++..+... ++|.+ +++||+|+...... ...++..+..
T Consensus 84 Gh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 999887777777889999999999987432222 2333334333 67855 57999998642211 1224555555
Q ss_pred HcC-----CeEEEecCCCCCC
Q 042687 146 KEG-----LSFLETSALEALN 161 (217)
Q Consensus 146 ~~~-----~~~~~vSa~~~~g 161 (217)
.++ ++++++||.++.+
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HcCCCcCceeEEecchhcccc
Confidence 543 6799999999854
No 223
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=8.1e-18 Score=140.48 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhh------ccchhhh-h-cC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY------RAITSAY-Y-RG 84 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~-~-~~ 84 (217)
.+|+++|+||||||||.|++++........+..+.+.....+...+.. ++++|.||--.. ....+.+ + ..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 569999999999999999999988877777777777777777777755 669999993211 1112233 3 46
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 042687 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 164 (217)
.|++|-|.|+++.+..-.+ --++.+. +.|++++.|++|....+-+ ..+.+.+.+.+|+|+++++|++|.|+++
T Consensus 82 ~D~ivnVvDAtnLeRnLyl---tlQLlE~---g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 82 PDLIVNVVDATNLERNLYL---TLQLLEL---GIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CCEEEEEcccchHHHHHHH---HHHHHHc---CCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 7999999999985543322 2233333 8999999999998764433 4577888999999999999999999999
Q ss_pred HHHHHHHH
Q 042687 165 AFQTILLD 172 (217)
Q Consensus 165 ~~~~l~~~ 172 (217)
+.+.+++.
T Consensus 155 l~~~i~~~ 162 (653)
T COG0370 155 LKRAIIEL 162 (653)
T ss_pred HHHHHHHh
Confidence 99988763
No 224
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.77 E-value=1.3e-17 Score=126.67 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=106.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh------hh------c
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE------RY------R 75 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~------~ 75 (217)
+....++|+|+|.||+|||||.|.+++.+..+.+..+.++.....-+...+. ..+.++||||-- .+ -
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchhhhHHHHHHhh
Confidence 3457799999999999999999999999998877766555555544444433 588999999921 11 1
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc-------------cC--HHH-
Q 042687 76 AITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA-------------VA--AED- 139 (217)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-------------~~--~~~- 139 (217)
......+.+||.+++++|+++.-..-. ...+..+.... .+|-+++.||.|...... +. ..+
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 122345688999999999986321111 12233333332 788899999999743211 11 011
Q ss_pred HHHHHH---------HcCC----eEEEecCCCCCCHHHHHHHHHHHH
Q 042687 140 AQILAE---------KEGL----SFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 140 ~~~~~~---------~~~~----~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
.+.+.. ..|+ .+|.+||++|+|++++-+||...+
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 111111 1123 389999999999999999998644
No 225
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=9.5e-18 Score=128.01 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh----hhccc---hhhhhcCC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----RYRAI---TSAYYRGA 85 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~---~~~~~~~~ 85 (217)
-.|.+||.||+|||||++++.+.+......+.++.......+.+++.. .+++-|+||.- ....+ ....++.+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence 468899999999999999999877664333333344444445555433 38899999932 12222 23345689
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHhhc--CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCe-EEEecCCCC
Q 042687 86 VGALLVYDITKR---QTFDNVTRWLRELRDHA--DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLS-FLETSALEA 159 (217)
Q Consensus 86 d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~ 159 (217)
+.++||+|++.. ..++.+..+..++..+. -...|.+||+||+|+++. ....+.++++...-+ ++++||+++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeeccc
Confidence 999999999988 77777766666654443 247899999999998631 122346777777644 999999999
Q ss_pred CCHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLD 172 (217)
Q Consensus 160 ~gv~~~~~~l~~~ 172 (217)
+|++++++.|.+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999887653
No 226
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=2.2e-17 Score=130.52 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=115.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh---------hhhccchh
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ---------ERYRAITS 79 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~ 79 (217)
....+.|.++|..|+|||||+|+|++........-..+.+.....+.+.+ ...+.+.||.|. +.|.+..
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL- 266 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL- 266 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-
Confidence 34568999999999999999999998766544333334455556666654 235679999993 2233322
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCC
Q 042687 80 AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEA 159 (217)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 159 (217)
.....+|+++.|+|++++...+.++.....+.+....++|+|+|.||+|+..... ....+..... ..+.+||++|
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~ 341 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTG 341 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccC
Confidence 2346899999999999998777777777777777656799999999999754222 1111111112 5899999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLDIYHI 176 (217)
Q Consensus 160 ~gv~~~~~~l~~~~~~~ 176 (217)
.|++.+.+.|.+.+...
T Consensus 342 ~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 342 EGLDLLRERIIELLSGL 358 (411)
T ss_pred cCHHHHHHHHHHHhhhc
Confidence 99999999998877543
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.77 E-value=1.2e-17 Score=126.09 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCC----------------C-------cceeeEEEE-------------EEEC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKS----------------T-------IGVEFATRT-------------LQVE 57 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~----------------t-------~~~~~~~~~-------------~~~~ 57 (217)
||+++|+.++|||||+++|..+.+...... | .+.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997655432110 0 000100000 0011
Q ss_pred CeEEEEEEEecCChhhhccchhhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc
Q 042687 58 GKTVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 135 (217)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (217)
.....+.++|+||++.|.......+. .+|++++|+|+.....-. ...++..+... ++|+++|+||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 11246789999999888665554453 689999999987654322 23444444443 7899999999998543221
Q ss_pred C--HHHHHHHHH--------------------------HcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 136 A--AEDAQILAE--------------------------KEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 136 ~--~~~~~~~~~--------------------------~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
. ..++..+.. ...+|+|.+|+.+|.|++++...|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1 112222222 11248999999999999999887743
No 228
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=3.7e-17 Score=125.62 Aligned_cols=159 Identities=20% Similarity=0.213 Sum_probs=111.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh------hhhc---cchhhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ------ERYR---AITSAY 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~~---~~~~~~ 81 (217)
...-|+|.|+||||||||++++.+.+......|.++.......+..++ .+++++||||. +... ......
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 347899999999999999999999887765555555566665555554 46789999992 1111 111122
Q ss_pred hcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC-CeEEEecCCC
Q 042687 82 YRGAVGALLVYDITKR--QTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG-LSFLETSALE 158 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~ 158 (217)
-.-.++++|++|++.. .+.+.-..++..+..... .|+++|.||+|..+.... +++.......+ .....+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeeee
Confidence 2457889999999753 466666778888887764 899999999998754433 33333344444 3477888888
Q ss_pred CCCHHHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDIYH 175 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~~~ 175 (217)
+.+++..-..+.....+
T Consensus 321 ~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 321 GCGLDKLREEVRKTALE 337 (346)
T ss_pred hhhHHHHHHHHHHHhhc
Confidence 88888888777766444
No 229
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=2.9e-17 Score=123.62 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccC----------------CCCCcceeeEEEEEEEC--------CeEEEEEEEecC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLE----------------SKSTIGVEFATRTLQVE--------GKTVKAQIWDTA 69 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------~~~~~~~i~D~~ 69 (217)
+|+|+|+.++|||||+.+|+....... .....+.......+.+. +..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999975432100 00111111111122222 346789999999
Q ss_pred ChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 70 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
|+..|......++..+|++++|+|+.+....+.... +..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEECCCcc
Confidence 999999999999999999999999988665544322 222222 268999999999975
No 230
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.75 E-value=6.5e-18 Score=137.90 Aligned_cols=166 Identities=27% Similarity=0.318 Sum_probs=121.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
.....+||+++|..|+||||||-.+....|.+.-.+-...-..+. .+.-..+..+|+|++..+.-+......++.||+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPa--dvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPA--DVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCC--ccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 334569999999999999999999999988665443321111112 222223446799998776666666778999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHH-HHHHHHHc-CC-eEEEecCCCCCC
Q 042687 88 ALLVYDITKRQTFDNV-TRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAED-AQILAEKE-GL-SFLETSALEALN 161 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~-~~-~~~~vSa~~~~g 161 (217)
+.++|+.+++++++.+ .+|+..++...+ .++|+|+|+||+|.......+.+. ..-+...+ .+ ..++|||++-.+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 9999999999999998 789999988773 479999999999986544332222 23333333 23 479999999999
Q ss_pred HHHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIYH 175 (217)
Q Consensus 162 v~~~~~~l~~~~~~ 175 (217)
+.++|.+....++.
T Consensus 163 ~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 163 VSELFYYAQKAVIH 176 (625)
T ss_pred hHhhhhhhhheeec
Confidence 99999987776543
No 231
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=1.5e-16 Score=118.33 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcce---eeEEEEEEECCeEEEEEEEecCChhhhccchhh-----hhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGV---EFATRTLQVEGKTVKAQIWDTAGQERYRAITSA-----YYRG 84 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~~ 84 (217)
++|+|+|.+|+|||||+|.|.+.........+.+. ......+.... ...+.+||+||.......... .+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 79999999999999999999986554322222221 11111111111 236789999996432222222 2567
Q ss_pred CcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCccccc-----------cCHHHHH----HHHHHcC
Q 042687 85 AVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHLRA-----------VAAEDAQ----ILAEKEG 148 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~----~~~~~~~ 148 (217)
+|+++++.+. + +... ..|+..+... +.|+++|+||+|+..... ...+++. ......+
T Consensus 81 ~d~~l~v~~~-~---~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST-R---FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC-C---CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8988888542 2 2222 3455555554 689999999999843111 0011122 2222222
Q ss_pred ---CeEEEecCC--CCCCHHHHHHHHHHHHHHHHHHHH
Q 042687 149 ---LSFLETSAL--EALNVEKAFQTILLDIYHIISKKA 181 (217)
Q Consensus 149 ---~~~~~vSa~--~~~gv~~~~~~l~~~~~~~~~~~~ 181 (217)
.++|.+|+. .+.++..+.+.|+..+-+..+.-.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 191 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHVF 191 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHHH
Confidence 368999998 578999999999998877655443
No 232
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=9.1e-17 Score=124.44 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCC----------C----------CcceeeEEEEEEECCeEEEEEEEecCChh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESK----------S----------TIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~----------~----------t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 72 (217)
-+|+|+|+.|+|||||+++|+...-..... . ..+.+.......+....+++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997532111100 0 01222333334445556788899999999
Q ss_pred hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
.|.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 8887777788999999999999875332 22334443333 3789999999999865
No 233
>PRK00049 elongation factor Tu; Reviewed
Probab=99.73 E-value=1.9e-16 Score=129.32 Aligned_cols=156 Identities=17% Similarity=0.128 Sum_probs=100.1
Q ss_pred CCCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccc------------c--CCCCCcceeeEEEEEEECCeEEEEEEEe
Q 042687 2 AYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFC------------L--ESKSTIGVEFATRTLQVEGKTVKAQIWD 67 (217)
Q Consensus 2 ~~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~------------~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D 67 (217)
+........+.++|+++|+.++|||||+++|++.... + ......+.+.......+......+.++|
T Consensus 2 ~~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iD 81 (396)
T PRK00049 2 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVD 81 (396)
T ss_pred chhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEE
Confidence 3334445567799999999999999999999863110 0 0001222333333334433345678999
Q ss_pred cCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCcccccc---CHHHHHHH
Q 042687 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIM-MAGNKSDLNHLRAV---AAEDAQIL 143 (217)
Q Consensus 68 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~ 143 (217)
|||+..|.......+..+|++++|+|+.+..... ..+++..+... ++|.+ +++||+|+...... ...++..+
T Consensus 82 tPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~ 157 (396)
T PRK00049 82 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred CCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence 9999888777777789999999999998643322 23333444433 68876 58999998642221 11234444
Q ss_pred HHHc-----CCeEEEecCCCCCC
Q 042687 144 AEKE-----GLSFLETSALEALN 161 (217)
Q Consensus 144 ~~~~-----~~~~~~vSa~~~~g 161 (217)
.... .++++++||.++.+
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHhcCCCccCCcEEEeecccccC
Confidence 4443 36899999998753
No 234
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.7e-17 Score=114.02 Aligned_cols=154 Identities=16% Similarity=0.300 Sum_probs=115.2
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.-|++++|-.|+|||||++.|.++... ...||.. .....+.+.+ ++++-+|.+||..-+..|..|+..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccc-ccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 358999999999999999999887763 3334422 2233344555 5778999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHH------HHHHcC-----------CeEEE
Q 042687 92 YDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQI------LAEKEG-----------LSFLE 153 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------~~~~~~-----------~~~~~ 153 (217)
+|+.|.+.+.+.+..++.+.... -..+|+++.+||+|.+... ++++.+. +....+ +.+|.
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 99999999998877777654443 2489999999999987643 3333322 111111 34788
Q ss_pred ecCCCCCCHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLD 172 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~ 172 (217)
||...+.|..+.|.|+...
T Consensus 173 csi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEccCccceeeeehhhh
Confidence 8999888888888887653
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=2.7e-16 Score=122.33 Aligned_cols=143 Identities=15% Similarity=0.230 Sum_probs=92.6
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccC----------CCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc-----
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE----------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR----- 75 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----- 75 (217)
..++|+|+|.+|+|||||+|+|++..+... ..+|.........+..++..+++.+|||||.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 358999999999999999999999876543 23344444445556667888899999999932111
Q ss_pred ---------------------cchhhhhc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 76 ---------------------AITSAYYR--GAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 76 ---------------------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
......+. .+|+++++++.+... +... ...+..+. . .+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---K-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---c-cCCEEEEEECCCcCC
Confidence 00112222 467778887766421 1111 22333333 2 689999999999854
Q ss_pred cc--ccCHHHHHHHHHHcCCeEEEecCCC
Q 042687 132 LR--AVAAEDAQILAEKEGLSFLETSALE 158 (217)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~~~~~vSa~~ 158 (217)
.. ......+.+.+..+++++|......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 22 2234456677788899988776543
No 236
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.71 E-value=2.1e-16 Score=130.55 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=100.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCcccc--------------------------CC---CCCcceeeEEEEEEECCeE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL--------------------------ES---KSTIGVEFATRTLQVEGKT 60 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~--------------------------~~---~~t~~~~~~~~~~~~~~~~ 60 (217)
.+.++|+++|+.++|||||+.+|+...-.. +. ....+.+.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 345999999999999999999886421100 00 0111222222233344455
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCCe-EEEEEeCCCCccc
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFD-------NVTRWLRELRDHADSNIV-IMMAGNKSDLNHL 132 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~ 132 (217)
..++++|+|||+.|.......+..+|++|+|+|+.+. .++ ...+.+...... ++| ++|++||+|+...
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCch
Confidence 6788999999999999999999999999999999863 121 222222323222 674 6889999997621
Q ss_pred cc------cCHHHHHHHHHHcC-----CeEEEecCCCCCCHHH
Q 042687 133 RA------VAAEDAQILAEKEG-----LSFLETSALEALNVEK 164 (217)
Q Consensus 133 ~~------~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~ 164 (217)
.. ...+++..++...+ ++++++||.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 10 11345666666665 6799999999999864
No 237
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=4.4e-16 Score=128.51 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=92.0
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHhHHhcC------ccc----------cCCCCCcceeeEEEEEEECCeEEEEEEEec
Q 042687 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRN------EFC----------LESKSTIGVEFATRTLQVEGKTVKAQIWDT 68 (217)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~------~~~----------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~ 68 (217)
......+.++|+++|+.++|||||+++|.+- ... .+..+..+.+ .....+.....++.++||
T Consensus 54 ~~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDt 131 (447)
T PLN03127 54 TFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDC 131 (447)
T ss_pred hhhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEEC
Confidence 3344456799999999999999999999621 100 1111222233 333344444457789999
Q ss_pred CChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccccccC---HHHHHHHH
Q 042687 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRAVA---AEDAQILA 144 (217)
Q Consensus 69 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~ 144 (217)
||+..|.......+..+|++++|+|+.+....+. .+.+..+... ++| +++++||+|+.+..... ..++..+.
T Consensus 132 PGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l 207 (447)
T PLN03127 132 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELL 207 (447)
T ss_pred CCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 9998876666666778999999999976533222 3333344433 788 56889999986422211 12333444
Q ss_pred HHc-----CCeEEEecCC
Q 042687 145 EKE-----GLSFLETSAL 157 (217)
Q Consensus 145 ~~~-----~~~~~~vSa~ 157 (217)
... .++++++|+.
T Consensus 208 ~~~~~~~~~vpiip~Sa~ 225 (447)
T PLN03127 208 SFYKFPGDEIPIIRGSAL 225 (447)
T ss_pred HHhCCCCCcceEEEeccc
Confidence 332 3678888876
No 238
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.71 E-value=2.9e-16 Score=131.79 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=79.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccC---------------C--C---CCcceeeEEEEEEECCeEEEEEEEecC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLE---------------S--K---STIGVEFATRTLQVEGKTVKAQIWDTA 69 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~---------------~--~---~t~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (217)
+...+|+|+|+.++|||||+++|+...-... . . ...+.+.......+....+.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999963111000 0 0 111222333333344445678899999
Q ss_pred ChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 70 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
|+..|......++..+|++|+|+|+++.... ....++..... .++|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 9998888777889999999999999875322 22344443333 389999999999974
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=1.3e-16 Score=132.79 Aligned_cols=153 Identities=24% Similarity=0.180 Sum_probs=95.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCC---------------------------------CCCcceeeEEEEEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLES---------------------------------KSTIGVEFATRTLQ 55 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~---------------------------------~~t~~~~~~~~~~~ 55 (217)
....++|+++|+.++|||||+.+|+...-.... ....+.+.....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~-- 101 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY-- 101 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE--
Confidence 345699999999999999999999754211100 011122222222
Q ss_pred ECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc
Q 042687 56 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 135 (217)
Q Consensus 56 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (217)
+......+.++||||++.|.......+..+|++++|+|+.........+.+ ..+... . ..|+++++||+|+.+....
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l-g-~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL-G-IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh-C-CCceEEEEEeeccccchhH
Confidence 333345678999999998866666667999999999999764322221222 122222 1 2478899999998642211
Q ss_pred CHH----HHHHHHHHc----CCeEEEecCCCCCCHHHHH
Q 042687 136 AAE----DAQILAEKE----GLSFLETSALEALNVEKAF 166 (217)
Q Consensus 136 ~~~----~~~~~~~~~----~~~~~~vSa~~~~gv~~~~ 166 (217)
... ++..+.... .++++++||++|.|+++.-
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 111 222333333 3689999999999998653
No 240
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=3.7e-16 Score=129.68 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=97.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccc------cC--------CCCCcceeeEEEEEEECCeEEEEEEEecCChhhh
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFC------LE--------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~------~~--------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (217)
..+.++|+++|+.++|||||+++|+..... .. .....+.+.......+......+.++|+||++.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 356699999999999999999999852110 00 0111222222222223333346789999999998
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCcccccc---CHHHHHHHHHHc---
Q 042687 75 RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV---AAEDAQILAEKE--- 147 (217)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~--- 147 (217)
.......+..+|++++|+|+.+...... .+++..+... ++| +++++||+|+.+.... ...++..+....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 8777778889999999999987543333 3333444433 777 7789999998652221 112445555543
Q ss_pred --CCeEEEecCCCCCCH
Q 042687 148 --GLSFLETSALEALNV 162 (217)
Q Consensus 148 --~~~~~~vSa~~~~gv 162 (217)
.++++++|+.++.++
T Consensus 234 ~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 234 GDDIPIISGSALLALEA 250 (478)
T ss_pred cCcceEEEEEccccccc
Confidence 468999999988543
No 241
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.70 E-value=8.2e-16 Score=117.98 Aligned_cols=155 Identities=21% Similarity=0.203 Sum_probs=108.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh-------hccchhhhh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYY 82 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~ 82 (217)
+..-+|+++|.|+||||||+++|.+-.......+.++....+..+.+++ ..++++|+||.-. -.....+..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3456899999999999999999998766544334435566677777777 4677999998321 122344567
Q ss_pred cCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCC---------------------------------------------
Q 042687 83 RGAVGALLVYDITKRQT-FDNVTRWLRELRDHADS--------------------------------------------- 116 (217)
Q Consensus 83 ~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~--------------------------------------------- 116 (217)
++||++++|+|+....+ .+.+.+.+....-..+.
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 89999999999986554 44444433332000000
Q ss_pred --------------------CCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 117 --------------------NIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 117 --------------------~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
=+|.+.|+||.|+.. .++...+.+.. ..+.+||..+.|++++.+.|-+.+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 178899999999876 34455555444 789999999999999999887754
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.70 E-value=2.7e-16 Score=128.85 Aligned_cols=148 Identities=23% Similarity=0.211 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccC---------------------------------CCCCcceeeEEEEEEECCe
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLE---------------------------------SKSTIGVEFATRTLQVEGK 59 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~---------------------------------~~~t~~~~~~~~~~~~~~~ 59 (217)
+||+++|+.++|||||+.+|+...-... .....+.+.....+ ...
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~--~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF--STD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE--ccC
Confidence 5899999999999999999964321100 00111222222223 233
Q ss_pred EEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC---
Q 042687 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA--- 136 (217)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--- 136 (217)
..++.++||||++.|.......+..+|++++|+|+......+..+.| ..+.... ..++++++||+|+.......
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~~--~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLLG--IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHcC--CCcEEEEEEecccccchHHHHHH
Confidence 45788999999998877666778999999999999765332222222 2222221 24588899999986422111
Q ss_pred -HHHHHHHHHHcC---CeEEEecCCCCCCHHHH
Q 042687 137 -AEDAQILAEKEG---LSFLETSALEALNVEKA 165 (217)
Q Consensus 137 -~~~~~~~~~~~~---~~~~~vSa~~~~gv~~~ 165 (217)
.++...+....+ ++++++||.+|.|+++.
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 122333344443 57999999999998863
No 243
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.2e-15 Score=124.26 Aligned_cols=152 Identities=19% Similarity=0.245 Sum_probs=106.9
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECC-eEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG-KTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
.+-|.++|+...|||||+..+........-....+-...-..+..+. ..-.+.++|||||+.|..+...-..-+|++|+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 35689999999999999999988776544333322222223333331 12357899999999999999888899999999
Q ss_pred EEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHH-------HHHcC--CeEEEecCCC
Q 042687 91 VYDITKR---QTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQIL-------AEKEG--LSFLETSALE 158 (217)
Q Consensus 91 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~vSa~~ 158 (217)
|++++|. ++.+.+ ......++|++|++||+|+++.+ ......- ...++ ..++++||++
T Consensus 85 VVa~dDGv~pQTiEAI-------~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 85 VVAADDGVMPQTIEAI-------NHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEccCCcchhHHHHH-------HHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 9999884 443332 22233399999999999987422 1111111 22232 4689999999
Q ss_pred CCCHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDI 173 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~ 173 (217)
|.|+++++..++-..
T Consensus 155 g~Gi~eLL~~ill~a 169 (509)
T COG0532 155 GEGIDELLELILLLA 169 (509)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999887644
No 244
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=2.4e-16 Score=122.23 Aligned_cols=112 Identities=21% Similarity=0.169 Sum_probs=76.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcccc------------------CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCL------------------ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR 75 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (217)
+|+|+|++|+|||||+++|....... +.....+.+.....+... ..++.++||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 58999999999999999996421110 011112222222333333 4577899999998888
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 76 AITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
..+...++.+|++|+|+|+.+...-.. ..++..+... ++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~---~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY---NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCEEEEEECCCCCC
Confidence 888899999999999999987533222 2333333333 789999999999864
No 245
>PRK13351 elongation factor G; Reviewed
Probab=99.70 E-value=6.2e-16 Score=134.69 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=82.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCcccc-------------CC-----CCCcceeeEEEEEEECCeEEEEEEEecC
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL-------------ES-----KSTIGVEFATRTLQVEGKTVKAQIWDTA 69 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~-------------~~-----~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (217)
+.+...+|+|+|+.++|||||+++|+...... ++ ....+.......+.. ..+.+++||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtP 81 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--DNHRINLIDTP 81 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--CCEEEEEEECC
Confidence 34566899999999999999999997532100 00 011111111222333 34678899999
Q ss_pred ChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 70 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
|+..|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+.
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~ 138 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRV 138 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCC
Confidence 9999988889999999999999999887665554444 33333 278999999999985
No 246
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.69 E-value=6.8e-16 Score=116.25 Aligned_cols=157 Identities=20% Similarity=0.285 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCC---CCcceeeEEEEEEECCeEEEEEEEecCChhhhcc-----chhhhhcCC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESK---STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-----ITSAYYRGA 85 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~ 85 (217)
||+++|+.+|||||+.+.+..+..+.+.. +|. +.....+... ..+.+++||+||+..+.. .....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~--~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTI--DVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-------SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcC--CceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 79999999999999999998876543332 333 3333333222 235788999999864433 356778999
Q ss_pred cEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCeEEEEEeCCCCccccc--cC----HHHHHHHHHHcC---CeEEE
Q 042687 86 VGALLVYDITKRQTFDNV---TRWLRELRDHADSNIVIMMAGNKSDLNHLRA--VA----AEDAQILAEKEG---LSFLE 153 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~----~~~~~~~~~~~~---~~~~~ 153 (217)
+++|+|+|+.+.+-.+.+ ...+..+....+ ++.+.|+++|+|+..+.. .. .+.+...+...+ +.++.
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 999999999854433444 344444444444 889999999999854221 11 123344444555 78999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
+|..+. .+-++|..+++.+..
T Consensus 157 TSI~D~-Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 157 TSIWDE-SLYEAWSKIVQKLIP 177 (232)
T ss_dssp E-TTST-HHHHHHHHHHHTTST
T ss_pred ccCcCc-HHHHHHHHHHHHHcc
Confidence 999984 789999998887753
No 247
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=2.2e-16 Score=118.73 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=106.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEE-EEEEECCeEEEEEEEecCChh-------hhccchhhh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFAT-RTLQVEGKTVKAQIWDTAGQE-------RYRAITSAY 81 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~~ 81 (217)
...++|+++|..|+|||||||+|+.+...+...-..+.+... ....+++ -.+.+||+||-+ +|+.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 355899999999999999999999766654443222222211 1122344 367899999943 478888999
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc-------ccC--------HHHHHHHHHH
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR-------AVA--------AEDAQILAEK 146 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-------~~~--------~~~~~~~~~~ 146 (217)
+...|.++++.++.|+.---.... ++.+....- +.++++++|.+|...+- ... ...++...+.
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f-~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDF-LRDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHH-HHHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999988763333333 333333322 58999999999974320 011 1112222222
Q ss_pred c--CCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 147 E--GLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 147 ~--~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
. --|++.++...+.|++.+...+++.+
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 2 14788899999999999999998855
No 248
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.68 E-value=9.1e-16 Score=118.58 Aligned_cols=163 Identities=17% Similarity=0.095 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh-------hccchhhhhcCCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYYRGAV 86 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d 86 (217)
-|.+||.|++|||||++++.+.+......+.++....--.+.++ ..-.+.+-|+||.-+ .-.-....+..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 46799999999999999999877664333333333333333442 223577999999321 1111233456789
Q ss_pred EEEEEEeCCChh---hHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEE-ecCCCCC
Q 042687 87 GALLVYDITKRQ---TFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLE-TSALEAL 160 (217)
Q Consensus 87 ~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-vSa~~~~ 160 (217)
++++|+|++..+ ..+....+..++..+.. .++|.+||+||+|+....+........+....++..+. +|+.++.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 999999998543 34555555555544432 48999999999996543333233344455555554222 9999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDIYHII 177 (217)
Q Consensus 161 gv~~~~~~l~~~~~~~~ 177 (217)
|++++...+.+.+.+..
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999988776654
No 249
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=9.2e-16 Score=119.42 Aligned_cols=132 Identities=20% Similarity=0.246 Sum_probs=85.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCC------------------CCcceeeEEEEEEECCeEEEEEEEecCChhhhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESK------------------STIGVEFATRTLQVEGKTVKAQIWDTAGQERYR 75 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~------------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (217)
+|+|+|++|+|||||+++|.......... ...+.......+..+ .+.+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 58999999999999999997532211100 011111122223333 3577899999998888
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEE
Q 042687 76 AITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLE 153 (217)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (217)
..+..++..+|++++|+|+++.........| ..+.. .++|.++++||+|+.... .......+....+.+++.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~ 150 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVP 150 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEE
Confidence 8888899999999999999876544333222 23333 378999999999987532 122334444455554443
No 250
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=5.7e-16 Score=125.87 Aligned_cols=160 Identities=19% Similarity=0.264 Sum_probs=117.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCC-------------CCCcceeeEEE--EE-EECCeEEEEEEEecCChhh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLES-------------KSTIGVEFATR--TL-QVEGKTVKAQIWDTAGQER 73 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~-------------~~t~~~~~~~~--~~-~~~~~~~~~~i~D~~G~~~ 73 (217)
+..-++.|+-+..-|||||..+|+........ ....|++.... .+ ..++..+.++++|||||..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 55679999999999999999999753321110 01222222222 22 2246778999999999999
Q ss_pred hccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC-HHHHHHHHHHcCCeEE
Q 042687 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA-AEDAQILAEKEGLSFL 152 (217)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 152 (217)
|.......+..+|++|+|+|++..-.-+.+..++..+.. +.-+|.|+||+|++..+... ..++.++......+++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 999999999999999999999987666666555555443 67799999999997644221 2344555555556899
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q 042687 153 ETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 153 ~vSa~~~~gv~~~~~~l~~~~ 173 (217)
.+||++|.|++++++.+++.+
T Consensus 214 ~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred EEEeccCccHHHHHHHHHhhC
Confidence 999999999999999999877
No 251
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.68 E-value=8e-16 Score=126.89 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=102.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCcc---ccCCC--CCcceeeEEEE------------E-EECC-------------
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEF---CLESK--STIGVEFATRT------------L-QVEG------------- 58 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~---~~~~~--~t~~~~~~~~~------------~-~~~~------------- 58 (217)
.+.++|+++|+...|||||+.+|.+-.. .++.. .|....+.... + ....
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4668999999999999999999986422 11111 11111111100 0 0000
Q ss_pred ---eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 59 ---KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR-QTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 59 ---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
-...+.++|+|||+.|.......+..+|++++|+|+.+. ...+..+. +..+... . -.++++++||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~eh-l~i~~~l-g-i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEH-LAAVEIM-K-LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHH-HHHHHHc-C-CCcEEEEEecccccCHHH
Confidence 013678999999999988777788899999999999864 12222222 2222222 1 246889999999865322
Q ss_pred c--CHHHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 135 V--AAEDAQILAEK---EGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 135 ~--~~~~~~~~~~~---~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
. ..+++..+... .+++++++||++|.|++.+++.|.+.+
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 1 12233443332 357899999999999999988887644
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.68 E-value=6.5e-16 Score=133.27 Aligned_cols=152 Identities=23% Similarity=0.204 Sum_probs=95.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccC-------------CC--------------------CCcceeeEEEEE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLE-------------SK--------------------STIGVEFATRTL 54 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~-------------~~--------------------~t~~~~~~~~~~ 54 (217)
+....++|+++|++++|||||+++|+...-... .. ...+.+.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 445668999999999999999999986432111 00 011111222222
Q ss_pred EECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 55 QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 55 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
.. ...++.++||||++.|.......+..+|++++|+|+......+..+ .+..+.... ..+++|++||+|+.+...
T Consensus 100 ~~--~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~~--~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 100 AT--PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLLG--IRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred cc--CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHhC--CCeEEEEEEecccccchh
Confidence 22 3346779999999988766666788999999999997643222211 222222221 357889999999864111
Q ss_pred c--C--HHHHHHHHHHcC---CeEEEecCCCCCCHHH
Q 042687 135 V--A--AEDAQILAEKEG---LSFLETSALEALNVEK 164 (217)
Q Consensus 135 ~--~--~~~~~~~~~~~~---~~~~~vSa~~~~gv~~ 164 (217)
. . ..++..+....+ ++++++||++|.|+++
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 1 122333444444 4699999999999875
No 253
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=2.7e-15 Score=102.19 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=70.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh---------hccchhhhhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER---------YRAITSAYYR 83 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~ 83 (217)
+|+|+|.+|+|||||+|+|.+.... ....+..+.......+.+++..+ .++||||... ........+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6999999999999999999986432 22222323333445556666554 5999999421 1112333448
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNK 126 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 126 (217)
.+|++++|+|..++.. +....++..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999877322 33344445553 38999999998
No 254
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=1.8e-15 Score=119.55 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=54.1
Q ss_pred EEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEE---------------------ECC-eEEEEEEEecCCh-
Q 042687 15 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQ---------------------VEG-KTVKAQIWDTAGQ- 71 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G~- 71 (217)
|+++|.++||||||+|+|++........+..+.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 58999999999999999998875432222222222211111 122 3467999999996
Q ss_pred ---hhhccchhh---hhcCCcEEEEEEeCC
Q 042687 72 ---ERYRAITSA---YYRGAVGALLVYDIT 95 (217)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~ii~v~d~~ 95 (217)
+....+... .+++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334443333 489999999999997
No 255
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.67 E-value=1.7e-15 Score=125.24 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=97.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCcc--cc------------------------CC-C--CCcceeeEEEEEEECCeE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEF--CL------------------------ES-K--STIGVEFATRTLQVEGKT 60 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~--~~------------------------~~-~--~t~~~~~~~~~~~~~~~~ 60 (217)
.+.++|+++|+.++|||||+.+|+...- .. +. . ...+.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 3558999999999999999999875211 00 00 0 111222222223344445
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccc-
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---F---DNVTRWLRELRDHADSNIV-IMMAGNKSDLNHL- 132 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~- 132 (217)
..++|+|+|||..|.......+..+|++|+|+|+....- + ....+.+..+... ++| ++|++||+|....
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVN 161 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccch
Confidence 678899999999998888888999999999999986420 0 1222223333333 666 6789999995321
Q ss_pred ---ccc--CHHHHHHHHHHc-----CCeEEEecCCCCCCHHH
Q 042687 133 ---RAV--AAEDAQILAEKE-----GLSFLETSALEALNVEK 164 (217)
Q Consensus 133 ---~~~--~~~~~~~~~~~~-----~~~~~~vSa~~~~gv~~ 164 (217)
... ...++..+.... .++++++|+.+|.|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 111 123344444433 36799999999999864
No 256
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=2.7e-15 Score=126.09 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=80.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC-ccccC-------------------CCCCcceeeEEEEEEECCeEEEEEEEecC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN-EFCLE-------------------SKSTIGVEFATRTLQVEGKTVKAQIWDTA 69 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~-~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (217)
....+|+|+|+.++|||||+++|+.. ..... .....+.+.......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 45679999999999999999998531 11000 00112333333344455556788899999
Q ss_pred ChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 70 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
|+..|.......+..+|++|+|+|+++... .....++..... .++|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 998888777778899999999999987422 122344443333 378999999999973
No 257
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=5.8e-15 Score=118.37 Aligned_cols=160 Identities=21% Similarity=0.246 Sum_probs=118.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCcc---------------ccCCCCCcceeeEEEEEEE---CCeEEEEEEEecC
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEF---------------CLESKSTIGVEFATRTLQV---EGKTVKAQIWDTA 69 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~---------------~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~ 69 (217)
+.+..-+..|+-+-..|||||..||..... +.+.....+..-....+.+ ++..+.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 344556889999999999999999865321 1222233333333344433 5688999999999
Q ss_pred ChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC
Q 042687 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL 149 (217)
Q Consensus 70 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (217)
||-.|.......+..|.++++|+|++..-.-+.+.+.+..+.. +..++-|+||+||+.... +.-..++..-.|+
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGi 158 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGI 158 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCC
Confidence 9999988888889999999999999987666777676666654 677899999999976332 1223334444554
Q ss_pred ---eEEEecCCCCCCHHHHHHHHHHHH
Q 042687 150 ---SFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 150 ---~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
..+.+||++|.|++++++.|++.+
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhC
Confidence 478999999999999999999876
No 258
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=9.7e-15 Score=108.56 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCC--CCcceeeEEEEEEECCeEEEEEEEecCChhhhc--------cc---hh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQVEGKTVKAQIWDTAGQERYR--------AI---TS 79 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~---~~ 79 (217)
++|+++|.+|||||||+|.+++........ +..+..........++ ..+.++||||..... .+ ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876543321 1222233333333444 367799999943221 11 11
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCeEEEEEeCCCCcccccc------CHHHHHHHHHHcCCeE
Q 042687 80 AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADS--NIVIMMAGNKSDLNHLRAV------AAEDAQILAEKEGLSF 151 (217)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~ 151 (217)
.....+|++++|+++.+ .+... ...+..+...... -.++++++|+.|......+ .......+....+..+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22467899999999876 22111 2333444433221 2568888999986432211 1134556666666666
Q ss_pred EEecC-----CCCCCHHHHHHHHHHHHH
Q 042687 152 LETSA-----LEALNVEKAFQTILLDIY 174 (217)
Q Consensus 152 ~~vSa-----~~~~gv~~~~~~l~~~~~ 174 (217)
+..+. ..+.++.++++.|.+.+.
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 55543 345667777766666553
No 259
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.63 E-value=1.9e-15 Score=100.12 Aligned_cols=136 Identities=20% Similarity=0.206 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh----hhhccchhhhhcCCcEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ----ERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~ii 89 (217)
||+++|..|+|||||.+++.+... .+..|..+ .+++.. .+||||. ..+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAv-------e~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAV-------EFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhccccee-------eccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999987653 22233222 222222 7899994 333333445568999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNVEKAFQT 168 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~~~~~ 168 (217)
+|-.++++++.-. ..+.... ..|+|-|++|.|+.+... .+..+++..+-|. ++|++|+.++.|+++++++
T Consensus 70 ~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCC-----ccccccc--ccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 9999998765211 1111111 456888999999986332 4467788888886 6999999999999999998
Q ss_pred HHH
Q 042687 169 ILL 171 (217)
Q Consensus 169 l~~ 171 (217)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 865
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.63 E-value=1.2e-14 Score=126.47 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=81.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCcccc------------------CCCCCcceeeEEEEEEECCeEEEEEEEecCC
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCL------------------ESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 70 (217)
.+...+|+|+|+.++|||||+++|+...-.. +.....+.+.....+..++ ..+.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 4566799999999999999999997421100 0112233333344444444 5678999999
Q ss_pred hhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
+..+...+...+..+|++|+|+|+.+....+.. ..+..+... ++|+++++||+|+.
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~---~~p~iv~iNK~D~~ 138 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY---GVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc---CCCEEEEEECCCCC
Confidence 988888888889999999999999876433332 333333333 78999999999985
No 261
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.63 E-value=4.9e-16 Score=112.24 Aligned_cols=116 Identities=24% Similarity=0.321 Sum_probs=71.6
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEE-CCeEEEEEEEecCChhhhccchhhh---hcCCcE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAY---YRGAVG 87 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~---~~~~d~ 87 (217)
.-.|+|+|+.|+|||+|..+|..+........- . ....+.+ ......+.++|+|||++.+...... ...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e---~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E---NNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-S---EEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c---CCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 357999999999999999999998543222211 1 1111222 1223357799999999887755444 789999
Q ss_pred EEEEEeCCC-hhhHHHH-HHHHHHHHhhc--CCCCeEEEEEeCCCCcc
Q 042687 88 ALLVYDITK-RQTFDNV-TRWLRELRDHA--DSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 88 ii~v~d~~~-~~s~~~~-~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~ 131 (217)
+|||+|.+. ...+..+ +.++..+.... ...+|++|+.||.|+..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999999974 3344554 44444443332 46899999999999854
No 262
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=7.4e-15 Score=127.85 Aligned_cols=122 Identities=17% Similarity=0.118 Sum_probs=85.1
Q ss_pred CCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCcccc-----C-------------CCCCcceeeEEEEEEECCeEEEEEE
Q 042687 4 KVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL-----E-------------SKSTIGVEFATRTLQVEGKTVKAQI 65 (217)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~-----~-------------~~~t~~~~~~~~~~~~~~~~~~~~i 65 (217)
|...+.+...+|+|+|+.++|||||+++|....-.. . .....+.+.....+..++ ..+.+
T Consensus 2 ~~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~l 79 (689)
T TIGR00484 2 ARTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINI 79 (689)
T ss_pred CCcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEE
Confidence 344556677899999999999999999996422111 0 011222233334444444 57889
Q ss_pred EecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 66 ~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
|||||+..+...+...+..+|++|+|+|+.+....+.. .++..+... ++|+++++||+|+..
T Consensus 80 iDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 80 IDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY---EVPRIAFVNKMDKTG 141 (689)
T ss_pred EECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc---CCCEEEEEECCCCCC
Confidence 99999988877788889999999999999876544433 233333333 789999999999875
No 263
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.9e-14 Score=117.13 Aligned_cols=152 Identities=22% Similarity=0.233 Sum_probs=108.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCC--CCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
...-|-|+|+..-|||||+..|.+........ .|..+.-..+.+. .| -.++|.|||||..|..|...-..-+|++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccEE
Confidence 34578899999999999999998877654332 3444334444444 44 4678999999999999999989999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHH-H------HHHcC--CeEEEecCCCC
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQI-L------AEKEG--LSFLETSALEA 159 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~------~~~~~--~~~~~vSa~~~ 159 (217)
++|+.+.|.--.+. ...+......++|++|.+||+|.++.. .+...+ + ...+| +.++++||++|
T Consensus 229 VLVVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 229 VLVVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 99999987432222 222333334499999999999987532 222221 1 12333 56999999999
Q ss_pred CCHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLD 172 (217)
Q Consensus 160 ~gv~~~~~~l~~~ 172 (217)
.|++.+.+.+.-.
T Consensus 302 ~nl~~L~eaill~ 314 (683)
T KOG1145|consen 302 ENLDLLEEAILLL 314 (683)
T ss_pred CChHHHHHHHHHH
Confidence 9999988877653
No 264
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1e-14 Score=115.48 Aligned_cols=155 Identities=22% Similarity=0.208 Sum_probs=98.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCc------------------------cccCCC-----CCcceeeEEEEEEECCeE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNE------------------------FCLESK-----STIGVEFATRTLQVEGKT 60 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~------------------------~~~~~~-----~t~~~~~~~~~~~~~~~~ 60 (217)
.+.++++++|+..+|||||+-+|+... ++..-+ ...+.+.......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 345999999999999999999886431 100001 112222333333333344
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhH-----HHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF-----DNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 135 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-----~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (217)
+.++|+|+|||..|......-+..||++|+|+|+.+.+.- ....+....+..... -..++|++||+|..+-++.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCHH
Confidence 5788999999998888888888999999999999876311 111122222333332 3457889999999762222
Q ss_pred CHHH----HHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 042687 136 AAED----AQILAEKEG-----LSFLETSALEALNVEKA 165 (217)
Q Consensus 136 ~~~~----~~~~~~~~~-----~~~~~vSa~~~~gv~~~ 165 (217)
..++ +..+.+..| ++|+++|+..|+|+.+.
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 2222 333444444 56999999999998654
No 265
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.1e-14 Score=117.34 Aligned_cols=163 Identities=21% Similarity=0.214 Sum_probs=105.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCC-CCCcceeeEEEEEEECCeEEEEEEEecCChhhh-cc--------chhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY-RA--------ITSA 80 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~--------~~~~ 80 (217)
..++|+|+|+||||||||+|.|.+....... .+.++.+.....++++|. .+.+.||+|..+. .. -...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~--~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGV--PVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCe--EEEEEeccccccccCChhHHHhHHHHHH
Confidence 4589999999999999999999998876443 355555666666777775 5569999995431 00 0133
Q ss_pred hhcCCcEEEEEEeC--CChhhHHHHHHHHHHHHhhcC------CCCeEEEEEeCCCCccc-cccCHHHHHHHHHHcC---
Q 042687 81 YYRGAVGALLVYDI--TKRQTFDNVTRWLRELRDHAD------SNIVIMMAGNKSDLNHL-RAVAAEDAQILAEKEG--- 148 (217)
Q Consensus 81 ~~~~~d~ii~v~d~--~~~~s~~~~~~~~~~i~~~~~------~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~--- 148 (217)
.+..+|++++|+|+ ++-++...+.+.+.....-.. ...|++++.||.|+... .+..-.-.. +....+
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~~~~~~~~ 423 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YPSAEGRSV 423 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee-ccccccCcc
Confidence 46789999999999 333333333333333322221 24789999999998653 111111111 111121
Q ss_pred C-eEEEecCCCCCCHHHHHHHHHHHHHHH
Q 042687 149 L-SFLETSALEALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 149 ~-~~~~vSa~~~~gv~~~~~~l~~~~~~~ 176 (217)
. .+.++|++++.|++.+...+.+.+...
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 2 355699999999999999998866543
No 266
>PRK09866 hypothetical protein; Provisional
Probab=99.59 E-value=1.2e-13 Score=115.55 Aligned_cols=108 Identities=15% Similarity=0.165 Sum_probs=71.5
Q ss_pred EEEEEecCChhh-----hccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC
Q 042687 62 KAQIWDTAGQER-----YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA 136 (217)
Q Consensus 62 ~~~i~D~~G~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (217)
.+.++||||... ........+..+|+++||+|+.+..+..+ ...+..+.... ...|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence 367899999532 22234457899999999999987433332 22334444332 136999999999985433222
Q ss_pred HHHHHHHHH----HcC---CeEEEecCCCCCCHHHHHHHHHH
Q 042687 137 AEDAQILAE----KEG---LSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 137 ~~~~~~~~~----~~~---~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
.+.+..+.. ..+ ..+|++||+.|.|++++++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 344444432 222 35999999999999999999877
No 267
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=4e-14 Score=123.24 Aligned_cols=146 Identities=17% Similarity=0.114 Sum_probs=92.9
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCcccc------------------CCCCCcceeeEEEEEEECCeEEEEEEEe
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL------------------ESKSTIGVEFATRTLQVEGKTVKAQIWD 67 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D 67 (217)
..+.+...+|+|+|+.++|||||+++|+...-.. +.....+.+.....+...+ ..++++|
T Consensus 4 ~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liD 81 (693)
T PRK00007 4 ETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIID 81 (693)
T ss_pred cCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEe
Confidence 3455667899999999999999999997411100 0112223333333344444 5778999
Q ss_pred cCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHc
Q 042687 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKE 147 (217)
Q Consensus 68 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (217)
|||+..|.......+..+|++|+|+|+......+... .+..+... ++|+++++||+|+.... ......++...+
T Consensus 82 TPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~~---~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l 155 (693)
T PRK00007 82 TPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADKY---KVPRIAFVNKMDRTGAD--FYRVVEQIKDRL 155 (693)
T ss_pred CCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHHc---CCCEEEEEECCCCCCCC--HHHHHHHHHHHh
Confidence 9999887766777889999999999987654434332 23333333 78999999999987533 122233333333
Q ss_pred CC----eEEEecCCCC
Q 042687 148 GL----SFLETSALEA 159 (217)
Q Consensus 148 ~~----~~~~vSa~~~ 159 (217)
+. ..+++|+..+
T Consensus 156 ~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 156 GANPVPIQLPIGAEDD 171 (693)
T ss_pred CCCeeeEEecCccCCc
Confidence 32 3455666554
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.58 E-value=1e-13 Score=112.76 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEE---------------------EC-CeEEEEEEEecCC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQ---------------------VE-GKTVKAQIWDTAG 70 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~G 70 (217)
++|+|+|.+|||||||+|+|.+........+..+.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998876532222222222221111 11 2346789999999
Q ss_pred h----hhhccchhhh---hcCCcEEEEEEeCC
Q 042687 71 Q----ERYRAITSAY---YRGAVGALLVYDIT 95 (217)
Q Consensus 71 ~----~~~~~~~~~~---~~~~d~ii~v~d~~ 95 (217)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2223333344 78999999999996
No 269
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.57 E-value=9.5e-14 Score=106.71 Aligned_cols=163 Identities=17% Similarity=0.329 Sum_probs=120.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEE--CCeEEEEEEEecCChhhhccchhhhhcCC---
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV--EGKTVKAQIWDTAGQERYRAITSAYYRGA--- 85 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~--- 85 (217)
..-+|+|+|..++|||||+.+|.+.. .+.+..+..+.+..+.- .+...++.+|-..|...+..+.+..+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 44689999999999999999997754 34444455555544432 33445788999999887777777665433
Q ss_pred -cEEEEEEeCCChh-hHHHHHHHHHHHHhhcCC-----------------------------------------------
Q 042687 86 -VGALLVYDITKRQ-TFDNVTRWLRELRDHADS----------------------------------------------- 116 (217)
Q Consensus 86 -d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~----------------------------------------------- 116 (217)
-++|++.|.+++. -++.+.+|...+.++.+.
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 3678889999984 566678888776444321
Q ss_pred --------------CCeEEEEEeCCCCc----cccc-------cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 117 --------------NIVIMMAGNKSDLN----HLRA-------VAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 117 --------------~~p~ivv~nK~Dl~----~~~~-------~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
++|++||.+|+|.. .+.+ .....++.||..+|..+|.+|+++..|++-+..+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 48899999999972 1111 1124578899999999999999999999999999998
Q ss_pred HHHHH
Q 042687 172 DIYHI 176 (217)
Q Consensus 172 ~~~~~ 176 (217)
.++-.
T Consensus 288 r~yG~ 292 (473)
T KOG3905|consen 288 RSYGF 292 (473)
T ss_pred HhcCc
Confidence 77643
No 270
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.56 E-value=4.4e-14 Score=113.99 Aligned_cols=171 Identities=17% Similarity=0.162 Sum_probs=119.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh----hhccchh-----hh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----RYRAITS-----AY 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~-----~~ 81 (217)
..-.++|+|.++||||||++.+........+.+.++.......+. ......+++||||.- +-+...+ ..
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~d--ykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLD--YKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhh--hheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 446899999999999999999998887766555544444443333 334567899999921 1111111 11
Q ss_pred hcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHH---HHHHHHHcCCeEEEecC
Q 042687 82 YRGAVGALLVYDITKR--QTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAED---AQILAEKEGLSFLETSA 156 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~vSa 156 (217)
.+--.+++++.|++.. .|...-..+++.+..... +.|+|+|+||+|+.....+..+. +..+...-+++++++|+
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 2233568889999864 466666777888877776 89999999999997766665433 33444455589999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042687 157 LEALNVEKAFQTILLDIYHIISKKALAA 184 (217)
Q Consensus 157 ~~~~gv~~~~~~l~~~~~~~~~~~~~~~ 184 (217)
.+..|+-++-....+.++...-....+.
T Consensus 324 ~~eegVm~Vrt~ACe~LLa~RVE~Klks 351 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALLAARVEQKLKS 351 (620)
T ss_pred cchhceeeHHHHHHHHHHHHHHHHHhhh
Confidence 9999999998888887776655544443
No 271
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.6e-14 Score=101.14 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhc---CCcEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR---GAVGAL 89 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~ii 89 (217)
-.|+++|+.+||||+|.-+|..+.+.... +........+.++.. .++++|.|||++.+.-...++. .+-++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 57999999999999999999888542222 122222333334333 3679999999998888877877 799999
Q ss_pred EEEeCCC-hhhHHHH-HHHHHHHHhh--cCCCCeEEEEEeCCCCccc--c----ccCHHHHH------------------
Q 042687 90 LVYDITK-RQTFDNV-TRWLRELRDH--ADSNIVIMMAGNKSDLNHL--R----AVAAEDAQ------------------ 141 (217)
Q Consensus 90 ~v~d~~~-~~s~~~~-~~~~~~i~~~--~~~~~p~ivv~nK~Dl~~~--~----~~~~~~~~------------------ 141 (217)
||+|..- .....++ +.++..+... ....+|++|+-||.|+.-. . ..-+.|+.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999753 2223333 4455544444 3568999999999998311 0 00011111
Q ss_pred ----------H--HHH--HcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 142 ----------I--LAE--KEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 142 ----------~--~~~--~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
. |.. ...+.+.+.|++++ +++++-+||.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 111 12355788899988 899999999774
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.54 E-value=1.7e-13 Score=119.28 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=73.8
Q ss_pred EcCCCCCHHHHHhHHhcCccccC------------------CCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchh
Q 042687 18 IGDSGVGKSNILSRFTRNEFCLE------------------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITS 79 (217)
Q Consensus 18 ~G~~~~GKstLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (217)
+|+.++|||||+++|....-... .....+.......+...+ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 69999999999999954321100 011222223333344444 6788999999988877788
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 80 AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
..+..+|++++|+|+++.........| ..+.. .++|+++++||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 889999999999999886554443333 33333 378999999999974
No 273
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.50 E-value=1.1e-13 Score=120.86 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=80.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCc---------------cccC---CCCCcceeeEEEEEEECCeEEEEEEEecCCh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNE---------------FCLE---SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~---------------~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 71 (217)
+...+|+|+|+.++|||||+++|+... +... +..|.........+.+++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456899999999999999999997531 1000 1122222222233345667788999999999
Q ss_pred hhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
..|.......+..+|++|+|+|+.+....+....| ..... .+.|.++++||+|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhcc
Confidence 98887788889999999999999774332322222 22222 267888999999985
No 274
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.50 E-value=4.9e-13 Score=103.86 Aligned_cols=150 Identities=27% Similarity=0.251 Sum_probs=101.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccc---------------------------------cCCCCCcceeeEEEEEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFC---------------------------------LESKSTIGVEFATRTLQ 55 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~ 55 (217)
....+|++.+|...=||||||-||+.+... .+....++++..+..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 345699999999999999999998764211 00111223333333333
Q ss_pred ECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc
Q 042687 56 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 135 (217)
Q Consensus 56 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (217)
.+. .+|.+-|||||+.|...+-.-...||++|+++|+... ...-.+-...+..... -..+++.+||+||.+-.+.
T Consensus 83 T~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 83 TEK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred ccc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHH
Confidence 333 4678999999999999888888999999999999432 2222222233444433 4568889999999764433
Q ss_pred CHH----HHHHHHHHcCC---eEEEecCCCCCCHH
Q 042687 136 AAE----DAQILAEKEGL---SFLETSALEALNVE 163 (217)
Q Consensus 136 ~~~----~~~~~~~~~~~---~~~~vSa~~~~gv~ 163 (217)
..+ +-..|+..+++ .++++||..|+|+-
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 232 34567777775 58999999999974
No 275
>PTZ00258 GTP-binding protein; Provisional
Probab=99.48 E-value=8.9e-13 Score=106.30 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=58.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCe---------------EEEEEEEecCChhh-
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK---------------TVKAQIWDTAGQER- 73 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~- 73 (217)
...++|+|+|.||||||||+|+|.+........+..+.+.....+.+.+. ...+.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45589999999999999999999887655444444444444444444322 23478999999421
Q ss_pred ------hccchhhhhcCCcEEEEEEeCC
Q 042687 74 ------YRAITSAYYRGAVGALLVYDIT 95 (217)
Q Consensus 74 ------~~~~~~~~~~~~d~ii~v~d~~ 95 (217)
........++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112334567899999999973
No 276
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.48 E-value=1.4e-12 Score=116.05 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=91.1
Q ss_pred CHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCe-----------EE-----EEEEEecCChhhhccchhhhhcCCcE
Q 042687 24 GKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK-----------TV-----KAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 24 GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----------~~-----~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
+||||+.++.+......-....+-......+..+.. .. .+.+|||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 499999999887665433222222222222222210 01 27899999999998888888889999
Q ss_pred EEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC----------------HHHHH----HH-
Q 042687 88 ALLVYDITK---RQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA----------------AEDAQ----IL- 143 (217)
Q Consensus 88 ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~----------------~~~~~----~~- 143 (217)
+++|+|+++ +++++.+. .+... ++|+++++||+|+...+... ..+.. .+
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~~---~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQY---KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHHc---CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999987 34444332 22222 78999999999985422210 01110 01
Q ss_pred --HHH---------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 144 --AEK---------------EGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 144 --~~~---------------~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
... ..++++++||++|.|+++++.+|....
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 011 136899999999999999998876543
No 277
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.48 E-value=6.8e-13 Score=91.06 Aligned_cols=114 Identities=34% Similarity=0.428 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCC-CCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777754443 3332 222334567788999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 163 (217)
|+..+.++++.+ |...+......+.|.++++||.|+.........+. ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999988765 77766655555788999999999854333333222 245567888888874
No 278
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.4e-13 Score=104.36 Aligned_cols=162 Identities=18% Similarity=0.121 Sum_probs=108.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCcc---ccCCCCCcceeeEE------------------EEEEEC------CeEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEF---CLESKSTIGVEFAT------------------RTLQVE------GKTVK 62 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~---~~~~~~t~~~~~~~------------------~~~~~~------~~~~~ 62 (217)
.+.++|.++|+..-|||||..+|.+-.- +++.....+....+ ..-.+. .-..+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 5679999999999999999999976321 11111111110000 000011 12346
Q ss_pred EEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc--ccCHHHH
Q 042687 63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR--AVAAEDA 140 (217)
Q Consensus 63 ~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~ 140 (217)
+.|+|.|||+-.-+.+.+-..-.|++++|+.++.+..--...+.+..+.-.. -..++++-||+|+.... ..+.+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 8899999999777666666677899999999987643333333333333332 35588999999996532 2345667
Q ss_pred HHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 141 QILAEKE---GLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 141 ~~~~~~~---~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
.+|.+.. +.|++++||..+.|++-++++|.+.+
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 7777643 57999999999999999999998766
No 279
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.47 E-value=1.7e-12 Score=106.67 Aligned_cols=166 Identities=18% Similarity=0.249 Sum_probs=121.4
Q ss_pred CCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhh
Q 042687 3 YKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYY 82 (217)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 82 (217)
+.+.......+++.++|+.++|||.|++.+.+..+...+..+....+....+...+....+.+.|.+-.+ ...+....
T Consensus 416 ~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~-~~~l~~ke- 493 (625)
T KOG1707|consen 416 RKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDD-QDFLTSKE- 493 (625)
T ss_pred hccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccc-cccccCcc-
Confidence 4455666788999999999999999999999999888666666666666666666766677788877542 22222222
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCe-EEEecCCCCCC
Q 042687 83 RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLS-FLETSALEALN 161 (217)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~g 161 (217)
..+|++.++||.+++.++......++.-... ...|+++|++|+|+++..+.....-.+++.+++++ .+..|.+..-.
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s 571 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS 571 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence 7899999999999999999886665544333 48999999999999765433333348899999974 55566664223
Q ss_pred HHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDI 173 (217)
Q Consensus 162 v~~~~~~l~~~~ 173 (217)
.++|..|..+.
T Consensus 572 -~~lf~kL~~~A 582 (625)
T KOG1707|consen 572 -NELFIKLATMA 582 (625)
T ss_pred -chHHHHHHHhh
Confidence 78888887765
No 280
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.47 E-value=2.8e-13 Score=103.79 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=78.3
Q ss_pred hhhccchhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCe
Q 042687 72 ERYRAITSAYYRGAVGALLVYDITKRQ-TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLS 150 (217)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (217)
+++..+.+.++.++|++++|||+.++. ++..+.+|+..+.. .++|+++|+||+||.+.+....+....+. ..+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence 567777888999999999999999887 89999999876654 38999999999999654443333444443 57889
Q ss_pred EEEecCCCCCCHHHHHHHHHH
Q 042687 151 FLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 151 ~~~vSa~~~~gv~~~~~~l~~ 171 (217)
++++||++|.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998863
No 281
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.46 E-value=1.6e-12 Score=99.63 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=71.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCC-CcceeeEEEEEEECCeEEEEEEEecCChhhhc----------cc
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKS-TIGVEFATRTLQVEGKTVKAQIWDTAGQERYR----------AI 77 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~ 77 (217)
....++|+|+|.+|||||||+|+|.+......... ..+..........++ ..+.+|||||..... ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 44669999999999999999999999765433221 222222222223344 567899999954321 00
Q ss_pred hhhhhc--CCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCC--CCeEEEEEeCCCCcc
Q 042687 78 TSAYYR--GAVGALLVYDITKRQ-TFDNVTRWLRELRDHADS--NIVIMMAGNKSDLNH 131 (217)
Q Consensus 78 ~~~~~~--~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~ 131 (217)
...++. ..|++++|..++... ... -..++..+....+. -.++++|.||+|...
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 122332 578888887665321 111 12334444443321 256999999999743
No 282
>PRK13768 GTPase; Provisional
Probab=99.44 E-value=1.6e-12 Score=100.15 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=69.0
Q ss_pred EEEEEecCChhhh---ccchhhhhc---C--CcEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 62 KAQIWDTAGQERY---RAITSAYYR---G--AVGALLVYDITKRQTFDNV--TRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 62 ~~~i~D~~G~~~~---~~~~~~~~~---~--~d~ii~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
.+.+||+||+.+. +..+..+++ . ++++++++|+......... ..|+...... ..++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 4789999997542 333333322 2 8999999999654332222 2222222211 23899999999999865
Q ss_pred ccccCH--HHHH------------------------HHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 132 LRAVAA--EDAQ------------------------ILAEKEG--LSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 132 ~~~~~~--~~~~------------------------~~~~~~~--~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
..+... .... +.....+ .+++++|+.++.|+++++++|.+.+
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 322110 0000 1122333 5789999999999999999998765
No 283
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.44 E-value=4.5e-12 Score=104.68 Aligned_cols=163 Identities=21% Similarity=0.377 Sum_probs=113.6
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC--CeEEEEEEEecCChhhhccchhhhhcC----
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE--GKTVKAQIWDTAGQERYRAITSAYYRG---- 84 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~---- 84 (217)
..-.|+|+|..++|||||+.+|.+.. .+.++.+.+|.+..+.-+ +...++.+|-..|...+..+.+..+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 44689999999999999999987543 344566666666554322 234568999998876666666554432
Q ss_pred CcEEEEEEeCCChhh-HHHHHHHHHHHHhhcC------------------------------------------------
Q 042687 85 AVGALLVYDITKRQT-FDNVTRWLRELRDHAD------------------------------------------------ 115 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------ 115 (217)
--++|+|.|.+.|.. ++.+.+|+..+..+..
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 137888999999864 3345555554411100
Q ss_pred --------------CCCeEEEEEeCCCCcc----cccc-------CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 116 --------------SNIVIMMAGNKSDLNH----LRAV-------AAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 116 --------------~~~p~ivv~nK~Dl~~----~~~~-------~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
.++|++||.+|+|... .... ...-++.+|..+|+.+|.+|++...+++-+..+|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 1489999999999632 1111 12236788889999999999999999999999988
Q ss_pred HHHHHH
Q 042687 171 LDIYHI 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
+.++..
T Consensus 261 h~l~~~ 266 (472)
T PF05783_consen 261 HRLYGF 266 (472)
T ss_pred HHhccC
Confidence 877654
No 284
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.44 E-value=1.6e-12 Score=97.93 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=69.5
Q ss_pred EEEEEEecCChh-hhccchhh-----hhc--CCcEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 61 VKAQIWDTAGQE-RYRAITSA-----YYR--GAVGALLVYDITKRQTF-DNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 61 ~~~~i~D~~G~~-~~~~~~~~-----~~~--~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
....++||||+- .|.+.... .+. ..-++++++|.....+. ..+..++..-.-.+....|+|++.||+|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 346799999963 33332211 122 23466777776543332 2334555444445556999999999999854
Q ss_pred cc-----ccCHH---H-------------HHHHHH-----HcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 042687 132 LR-----AVAAE---D-------------AQILAE-----KEGLSFLETSALEALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 132 ~~-----~~~~~---~-------------~~~~~~-----~~~~~~~~vSa~~~~gv~~~~~~l~~~~~~~ 176 (217)
.. ....+ + ...++. ..++..+.||+.+|.|.+++|..+-+.+.+-
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 21 10000 0 111111 1246789999999999999999988866554
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.43 E-value=4.4e-12 Score=94.21 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=62.7
Q ss_pred EEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHH
Q 042687 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQ 141 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 141 (217)
...++++.|..-..... . .-+|.+|.|+|+.+.++... .+...+ ...-++++||+|+.+......+...
T Consensus 93 D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 93 EMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHHH
Confidence 45577887742222221 1 12688999999987555321 111222 1112789999999753222233334
Q ss_pred HHHHH--cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 142 ILAEK--EGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 142 ~~~~~--~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
+..+. .+.+++++||++|.|++++|+||.+.+
T Consensus 162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44443 357899999999999999999998754
No 286
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.42 E-value=4.3e-12 Score=98.85 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=69.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCC-CCcceeeEEEEEEECCeEEEEEEEecCChhhhcc-------chhh
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-------ITSA 80 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~ 80 (217)
....++|+|+|.+|+||||++|+|++........ .+.+..........++ .++.++||||...... ....
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 3467999999999999999999999876532221 1112222122223344 5788999999542211 1122
Q ss_pred hh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCcc
Q 042687 81 YY--RGAVGALLVYDITKRQTFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNH 131 (217)
Q Consensus 81 ~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~ 131 (217)
++ ...|++++|..++.....+.-..++..+....+ --.+++|++|+.|...
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 22 268999999665421111111223333333321 1246899999999653
No 287
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.42 E-value=1.2e-12 Score=116.09 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=80.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccC----------------CCCCcceeeEEEEEEE--------------CC
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLE----------------SKSTIGVEFATRTLQV--------------EG 58 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~--------------~~ 58 (217)
.+...+|+|+|+.++|||||+.+|+...-... .....+.......+.. ++
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 45667999999999999999999975432100 0011111111112222 12
Q ss_pred eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
..+.++++|||||..|.......+..+|++|+|+|+.+.-.......| ..+.. .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH---CCCCEEEEEECCccc
Confidence 356788999999999988888889999999999999876544443333 23333 278999999999986
No 288
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.42 E-value=5.4e-12 Score=94.86 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCC--CCcceeeEEEEEEECCeEEEEEEEecCChhh-------hccch----h
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAIT----S 79 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~----~ 79 (217)
++|+|+|..||||||++|.+++........ ...+..........++. .+.++||||... ..... .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987654432 22223344444466775 467999999211 11111 1
Q ss_pred hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc----C---HHHHHHHHHHcCCeE
Q 042687 80 AYYRGAVGALLVYDITKRQ-TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV----A---AEDAQILAEKEGLSF 151 (217)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~----~---~~~~~~~~~~~~~~~ 151 (217)
....+.+++++|+.+.... ....+.+++..+....- -..++||.|..|......+ . ...+..+....+-.+
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH-HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 2346789999999987321 11222222332222111 2347888888876443321 1 122456677778788
Q ss_pred EEecCC
Q 042687 152 LETSAL 157 (217)
Q Consensus 152 ~~vSa~ 157 (217)
+..+..
T Consensus 158 ~~f~n~ 163 (212)
T PF04548_consen 158 HVFNNK 163 (212)
T ss_dssp EECCTT
T ss_pred EEEecc
Confidence 877665
No 289
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.42 E-value=4.5e-12 Score=111.15 Aligned_cols=118 Identities=18% Similarity=0.162 Sum_probs=78.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCC-----------C-----CCcceeeE--EEEEEECCeEEEEEEEecCC
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLES-----------K-----STIGVEFA--TRTLQVEGKTVKAQIWDTAG 70 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~-----------~-----~t~~~~~~--~~~~~~~~~~~~~~i~D~~G 70 (217)
.+...+|+|+|+.++|||||+.+|+...-.... . ...+.... ...+..++....++++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 345568999999999999999999753211100 0 00111111 11222344467788999999
Q ss_pred hhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
+..|.......+..+|++|+|+|+...........|. ..... +.|.++++||+|+.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc---CCCeEEEEECchhh
Confidence 9988888888899999999999987754333323332 22222 56789999999975
No 290
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.41 E-value=1.6e-11 Score=98.33 Aligned_cols=142 Identities=21% Similarity=0.211 Sum_probs=87.5
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC----ccc------------cCC--C---CCcceee---EEEEEE-ECCeEEEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN----EFC------------LES--K---STIGVEF---ATRTLQ-VEGKTVKAQI 65 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~----~~~------------~~~--~---~t~~~~~---~~~~~~-~~~~~~~~~i 65 (217)
..+.|+|+|+.++|||||+|+|.+. ... +.. . .|+.-.+ ....+. .++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4689999999999999999999987 322 111 1 1111111 112222 2455667889
Q ss_pred EecCChhh--------hcc---------------------chhhhhc-CCcEEEEEE-eCC----ChhhHHH-HHHHHHH
Q 042687 66 WDTAGQER--------YRA---------------------ITSAYYR-GAVGALLVY-DIT----KRQTFDN-VTRWLRE 109 (217)
Q Consensus 66 ~D~~G~~~--------~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~s~~~-~~~~~~~ 109 (217)
+||+|-.. ... -....+. .+|+.|+|. |.+ .++.+.. -++++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999210 000 0223345 899999998 764 1122222 2566666
Q ss_pred HHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCC
Q 042687 110 LRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSAL 157 (217)
Q Consensus 110 i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 157 (217)
+++. ++|+++++|+.|..... ..+....+...++++++.+|+.
T Consensus 176 Lk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 176 LKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHH
Confidence 7666 99999999999943222 2333456667778888888754
No 291
>PTZ00416 elongation factor 2; Provisional
Probab=99.39 E-value=2.3e-12 Score=114.13 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=79.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccC----------------CCCCcceeeEEEEEEEC--------CeEEEEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLE----------------SKSTIGVEFATRTLQVE--------GKTVKAQ 64 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------~~~~~~~ 64 (217)
.+...+|+|+|+.++|||||+++|+....... .....+.......+.+. +....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45567999999999999999999976321110 00011111111122222 2256788
Q ss_pred EEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 65 i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
++||||+..|.......+..+|++|+|+|+.+.-..... ..+..+... ++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQE---RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHc---CCCEEEEEEChhhh
Confidence 999999998888888889999999999999875433332 233333333 78999999999986
No 292
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.4e-12 Score=107.33 Aligned_cols=163 Identities=20% Similarity=0.200 Sum_probs=107.5
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCC----cceeeEEEE--------EEECCe-EE---EEEEEecCChhhhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKST----IGVEFATRT--------LQVEGK-TV---KAQIWDTAGQERYR 75 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t----~~~~~~~~~--------~~~~~~-~~---~~~i~D~~G~~~~~ 75 (217)
.+-|+|+|+..+|||-|+..+.+..+......+ ++.++.+.. +.-++. .+ -+.++|||||+.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 367999999999999999999875543322222 122222211 000010 01 25699999999999
Q ss_pred cchhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC----------------
Q 042687 76 AITSAYYRGAVGALLVYDITK---RQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA---------------- 136 (217)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~---------------- 136 (217)
.+.......||.+|+|+|+.+ +++++.+ +.++. .+.|+||++||+|..-.+...
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHH----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 999999999999999999975 3444432 33333 389999999999973211000
Q ss_pred --------HHHHHHHHH-HcC-------------CeEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042687 137 --------AEDAQILAE-KEG-------------LSFLETSALEALNVEKAFQTILLDIYHIISKKA 181 (217)
Q Consensus 137 --------~~~~~~~~~-~~~-------------~~~~~vSa~~~~gv~~~~~~l~~~~~~~~~~~~ 181 (217)
...+.+|+. .++ +.++++||.+|+|+.+++.+|++.....+..+.
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl 694 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKL 694 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 001122221 111 347899999999999999999998887777655
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.39 E-value=7.4e-12 Score=99.25 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=68.9
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc--CHH
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--AAE 138 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~ 138 (217)
+.+.++||+|...-.. .....+|.++++.+....+.+..+.. .+. ...-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~-----E~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---GIM-----ELADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---hhh-----hhhheEEeehhcccchhHHHHHHH
Confidence 5678999999652221 24667999999987555555544332 122 2223799999998652211 122
Q ss_pred HHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q 042687 139 DAQILAEK-------EGLSFLETSALEALNVEKAFQTILLDIYHIIS 178 (217)
Q Consensus 139 ~~~~~~~~-------~~~~~~~vSa~~~~gv~~~~~~l~~~~~~~~~ 178 (217)
+....... +..+++.+||+++.|++++++.|.+++.....
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~ 264 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA 264 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 33333322 23589999999999999999999997654433
No 294
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.39 E-value=2.5e-11 Score=96.95 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCe---------------EEEEEEEecCChhh----
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK---------------TVKAQIWDTAGQER---- 73 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~---- 73 (217)
++|+|+|.||||||||+|+|.+........+..+.+.....+.+.+. +..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987754333333344444444444332 13588999999421
Q ss_pred ---hccchhhhhcCCcEEEEEEeCC
Q 042687 74 ---YRAITSAYYRGAVGALLVYDIT 95 (217)
Q Consensus 74 ---~~~~~~~~~~~~d~ii~v~d~~ 95 (217)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112233467999999999984
No 295
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.38 E-value=3.8e-11 Score=95.51 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=81.4
Q ss_pred EEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCC
Q 042687 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVTRWLRELRDHA-DSNIVIMMAGNKSD 128 (217)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D 128 (217)
.+.+.+||++|+...+..|..++.+++++|+|+|+++. ..+......+..+.... -.+.|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 35688999999999999999999999999999999874 23333333333333322 14799999999999
Q ss_pred Ccccc----------------ccCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 042687 129 LNHLR----------------AVAAEDAQILAEK----------EGLSFLETSALEALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 129 l~~~~----------------~~~~~~~~~~~~~----------~~~~~~~vSa~~~~gv~~~~~~l~~~~~~~ 176 (217)
+..+. .-..+++..+... ..+..+.++|.+..++..+|+.+.+.+...
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 62210 1123333333221 234567789999999999999998887664
No 296
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=7.7e-12 Score=97.09 Aligned_cols=163 Identities=16% Similarity=0.164 Sum_probs=94.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCc----cccCCCCC---cceeeEEEEEEE-------CCeEEEEEEEecCChhhhc
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNE----FCLESKST---IGVEFATRTLQV-------EGKTVKAQIWDTAGQERYR 75 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~----~~~~~~~t---~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~ 75 (217)
+..+++.++|+..||||||.++|..-. |+.....+ .+.+..-..+.+ .+....+.++|+|||....
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 445999999999999999999996532 22111111 111111111111 3455778999999997665
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC--H-HHHHHHHHHc-----
Q 042687 76 AITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA--A-EDAQILAEKE----- 147 (217)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~-~~~~~~~~~~----- 147 (217)
+.......-.|..++|+|+.....-+..+-++ +.+.. -...+||+||+|...+.... . .....+.+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 55555555669999999997644333333222 22222 23467888898874432211 1 1122222221
Q ss_pred --CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 042687 148 --GLSFLETSALEALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 148 --~~~~~~vSa~~~~gv~~~~~~l~~~~~~~ 176 (217)
+.|++++||+.|.-.++....|.+.+.++
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence 27899999999954555555555544443
No 297
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.38 E-value=6.1e-12 Score=94.30 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCccccccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 117 NIVIMMAGNKSDLNHLRAVAAEDAQILAEKE--GLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 117 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
..|.++++||+|+.........+........ .++++++||+++.|++++|+++.++
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999653222233344434433 3789999999999999999999874
No 298
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.37 E-value=1e-11 Score=99.77 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCcc--ccC------------CCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEF--CLE------------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI 77 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~--~~~------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 77 (217)
.-+|+|+-+...|||||+..|+.... ... .....+.+.-.+.-.+....++++|+|||||..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 35899999999999999999976432 111 1122233344444344455578899999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC-HHHHHHHHH-------HcCC
Q 042687 78 TSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA-AEDAQILAE-------KEGL 149 (217)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~-------~~~~ 149 (217)
.+..+.-+|++++++|+.+..-.+. +..+ ......+.+.|+|+||+|.+..+... ..+.-.+.. +++.
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQT-rFVl---kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQT-RFVL---KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCch-hhhH---HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 9999999999999999987432222 1112 22222377788999999987644211 122223322 4557
Q ss_pred eEEEecCCCC----------CCHHHHHHHHHHHH
Q 042687 150 SFLETSALEA----------LNVEKAFQTILLDI 173 (217)
Q Consensus 150 ~~~~vSa~~~----------~gv~~~~~~l~~~~ 173 (217)
|++..|+..| .++.-+|+.|++++
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 8999998876 34677888887776
No 299
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.37 E-value=1.5e-11 Score=93.18 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=82.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
.+...|+|+|.+|+|||||++.+.+...........+. + .+.. .....+.++||||.- .. .......+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~~-~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVVT-GKKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEEe-cCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 45578999999999999999999864221111111111 1 1111 133467799999864 22 233468899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCCccccc-cC--HHHHHH-HHHH--cCCeEEEecCCCCCC
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVI-MMAGNKSDLNHLRA-VA--AEDAQI-LAEK--EGLSFLETSALEALN 161 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl~~~~~-~~--~~~~~~-~~~~--~~~~~~~vSa~~~~g 161 (217)
+++|++....... ..++..+... +.|. ++|+||.|+.+... .. ..++.. +..+ .+.+++.+||+++..
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 9999976443222 2333334333 6675 45999999853221 11 112222 2221 246899999998733
No 300
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.36 E-value=6.8e-12 Score=90.89 Aligned_cols=62 Identities=21% Similarity=0.186 Sum_probs=44.9
Q ss_pred EEEEecCChh----hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 042687 63 AQIWDTAGQE----RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127 (217)
Q Consensus 63 ~~i~D~~G~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 127 (217)
+.|+|+||.. .....+..++..+|++|+|.++.....-.....+....... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 6899999943 34466788889999999999998866555555555555444 34488888984
No 301
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.35 E-value=4.3e-13 Score=102.14 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=58.3
Q ss_pred EEEEEecCChhhhccchhhhh--------cCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccc
Q 042687 62 KAQIWDTAGQERYRAITSAYY--------RGAVGALLVYDITKRQT-FDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 132 (217)
.+.++|||||.++...+.... ...-++++++|.....+ ...+..++..+......+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 578999999887655554332 34457888888754322 222233333333333338999999999999652
Q ss_pred c-------ccC------------HHHHHHHHHHc---C-C-eEEEecCCCCCCHHHHHHHHHHH
Q 042687 133 R-------AVA------------AEDAQILAEKE---G-L-SFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 133 ~-------~~~------------~~~~~~~~~~~---~-~-~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
. ... ....+.++.-. + + .++++|+.++.|+++++..+-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 1 000 01112222222 2 3 69999999999999999887654
No 302
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.34 E-value=1.7e-10 Score=92.56 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=81.3
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCC
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDL 129 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl 129 (217)
+.+.+||.+|+...+..|..++.+++++|||+|+++. ..+.....++..+.... -.+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 4578999999999999999999999999999999973 23344334444443322 247999999999997
Q ss_pred cccc---------------ccCHHHHHHHHH-----H------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 042687 130 NHLR---------------AVAAEDAQILAE-----K------EGLSFLETSALEALNVEKAFQTILLDIYHII 177 (217)
Q Consensus 130 ~~~~---------------~~~~~~~~~~~~-----~------~~~~~~~vSa~~~~gv~~~~~~l~~~~~~~~ 177 (217)
.... ......+..+.. . ..+.++.++|.+-.++..+|+.+.+.+.+..
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 3210 012233322221 1 1245677889999999999999888876653
No 303
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=5.7e-12 Score=92.61 Aligned_cols=156 Identities=22% Similarity=0.328 Sum_probs=100.1
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc-----chhhhhcCC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-----ITSAYYRGA 85 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~ 85 (217)
.-||+++|.+|+|||++-..+..+... +....+.+.++.+..+.+-|. +.+.+||++|++.+-. .....+.++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 358999999999999998877765543 222334445555555444432 4678999999884422 334568899
Q ss_pred cEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCeEEEEEeCCCCccccc--cC----HHHHHHHHHHcCCeEEEecC
Q 042687 86 VGALLVYDITKRQTFDNV---TRWLRELRDHADSNIVIMMAGNKSDLNHLRA--VA----AEDAQILAEKEGLSFLETSA 156 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~----~~~~~~~~~~~~~~~~~vSa 156 (217)
+++|+|||+...+-..++ ...+..+..+.+ ...+.+..+|.|+..... .. ......+....++.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999999887644444 344445555554 677888999999965321 11 12234444455677888887
Q ss_pred CCCCCHHHHHHHHH
Q 042687 157 LEALNVEKAFQTIL 170 (217)
Q Consensus 157 ~~~~gv~~~~~~l~ 170 (217)
.+.. +-.++..+.
T Consensus 162 wDet-l~KAWS~iv 174 (295)
T KOG3886|consen 162 WDET-LYKAWSSIV 174 (295)
T ss_pred hhHH-HHHHHHHHH
Confidence 7653 333444443
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.32 E-value=2e-11 Score=97.60 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=81.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCC-CC--cceeeEEEEEEECCeEEEEEEEecCChhhhccchhh-----hh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK-ST--IGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA-----YY 82 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~-~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~ 82 (217)
..++|+|+|.+|+|||||||+|.+-.-.+... +| ..++.....+.....+ ++.+||.||.....-.... -+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 46899999999999999999998743322222 11 1222223333333222 4779999995322111222 35
Q ss_pred cCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCc-------cccccCHH----HHHHHH----HH
Q 042687 83 RGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLN-------HLRAVAAE----DAQILA----EK 146 (217)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~----~~~~~~----~~ 146 (217)
...|.+|++.+-. |.... .+...+... ++|+++|-+|+|.. .++...++ ++++.+ +.
T Consensus 113 ~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 6779888876642 22222 223334444 89999999999961 11222222 223322 22
Q ss_pred cCC---eEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHH
Q 042687 147 EGL---SFLETSALEA--LNVEKAFQTILLDIYHIISKKAL 182 (217)
Q Consensus 147 ~~~---~~~~vSa~~~--~gv~~~~~~l~~~~~~~~~~~~~ 182 (217)
.++ ++|-+|+.+- .++..+.+.|.+.+-..+.+...
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fl 226 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFL 226 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHH
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHH
Confidence 343 5899998764 45777777777766555554443
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.30 E-value=4.9e-11 Score=92.97 Aligned_cols=138 Identities=18% Similarity=0.320 Sum_probs=74.4
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCC----------CCCcceeeEEEEEEECCeEEEEEEEecCChhh-------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES----------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQER------- 73 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------- 73 (217)
..++|+|+|.+|+|||||+|.|++....... ..+.........+.-++..+++.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3589999999999999999999986543321 12223333334455578889999999999210
Q ss_pred hccc-------hhhhh-------------cCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccc
Q 042687 74 YRAI-------TSAYY-------------RGAVGALLVYDITKRQ-TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (217)
Q Consensus 74 ~~~~-------~~~~~-------------~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 132 (217)
+..+ ...++ ..+|++++.++++... .-.++ ..+..+.. .+++|-|+.|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~----~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLSK----RVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHTT----TSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhcc----cccEEeEEecccccCH
Confidence 0000 00111 3578999999986421 11222 23333333 6889999999997442
Q ss_pred cccC--HHHHHHHHHHcCCeEEE
Q 042687 133 RAVA--AEDAQILAEKEGLSFLE 153 (217)
Q Consensus 133 ~~~~--~~~~~~~~~~~~~~~~~ 153 (217)
.+.. ...+..-....++.+|.
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFD 180 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S--
T ss_pred HHHHHHHHHHHHHHHHcCceeec
Confidence 2211 12233334455565554
No 306
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.8e-11 Score=90.43 Aligned_cols=152 Identities=20% Similarity=0.152 Sum_probs=99.8
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCc----------------cccCCCCCcceeeEEEEEEECCeEEEEE
Q 042687 1 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNE----------------FCLESKSTIGVEFATRTLQVEGKTVKAQ 64 (217)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 64 (217)
|+........+-++|..+|+.+-|||||..++..-- .+++ ...+.+.....+.++-....+.
T Consensus 1 mak~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeE--k~rGITIntahveyet~~rhya 78 (394)
T COG0050 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEE--KARGITINTAHVEYETANRHYA 78 (394)
T ss_pred CchhhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchH--hhcCceeccceeEEecCCceEE
Confidence 343344445567999999999999999999875411 1111 2233444444444444445667
Q ss_pred EEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccccc---cCHHHH
Q 042687 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRA---VAAEDA 140 (217)
Q Consensus 65 i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~ 140 (217)
.+|+|||..|-..+..-..++|+.|+|++++|..-.+..++.+ ..+.. ++| +++++||+|+.+..+ +-+.|.
T Consensus 79 hVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-larqv---Gvp~ivvflnK~Dmvdd~ellelVemEv 154 (394)
T COG0050 79 HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-LARQV---GVPYIVVFLNKVDMVDDEELLELVEMEV 154 (394)
T ss_pred eccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-hhhhc---CCcEEEEEEecccccCcHHHHHHHHHHH
Confidence 9999999998887777788999999999999854434333222 12222 665 667889999976432 234567
Q ss_pred HHHHHHcCC-----eEEEecCCC
Q 042687 141 QILAEKEGL-----SFLETSALE 158 (217)
Q Consensus 141 ~~~~~~~~~-----~~~~vSa~~ 158 (217)
+++...++. |++.-||..
T Consensus 155 reLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 155 RELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHHHHHcCCCCCCcceeechhhh
Confidence 888888874 466666554
No 307
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.28 E-value=9.2e-11 Score=90.80 Aligned_cols=81 Identities=17% Similarity=0.130 Sum_probs=54.7
Q ss_pred EEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCe---------------EEEEEEEecCChhh------
Q 042687 15 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK---------------TVKAQIWDTAGQER------ 73 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~------ 73 (217)
|+|+|.+|||||||+|+|.+........+..+.+.....+.+.+. +..+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999998765443344444444444444332 23588999999421
Q ss_pred -hccchhhhhcCCcEEEEEEeCC
Q 042687 74 -YRAITSAYYRGAVGALLVYDIT 95 (217)
Q Consensus 74 -~~~~~~~~~~~~d~ii~v~d~~ 95 (217)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112233467899999999873
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=8.4e-11 Score=101.26 Aligned_cols=119 Identities=16% Similarity=0.172 Sum_probs=87.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccC-----C-----------CCCcceeeEEEEEEECCe-EEEEEEEecCCh
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLE-----S-----------KSTIGVEFATRTLQVEGK-TVKAQIWDTAGQ 71 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~-----~-----------~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~ 71 (217)
.+..-+|.|+|+..+|||||..+++...-... . ....+.+.......+.+. .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 55678999999999999999999864321111 0 011244444544555555 478899999999
Q ss_pred hhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
-.|.......++-+|++|+|+|+...-..+.-.-|.+.. ..++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccc
Confidence 999999999999999999999998765544444444332 33899999999999754
No 309
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.26 E-value=1.5e-10 Score=91.46 Aligned_cols=104 Identities=17% Similarity=0.050 Sum_probs=63.8
Q ss_pred EEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCH--
Q 042687 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAA-- 137 (217)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~-- 137 (217)
.+.+.|+||+|..... ......+|.++++-+.... +.+......+ .++|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 3567899999854211 2346678888888554333 3332222222 1677899999999875322111
Q ss_pred HH----HHHHHH---HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 138 ED----AQILAE---KEGLSFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 138 ~~----~~~~~~---~~~~~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
.. ...+.. .+..+++++||+++.|+++++++|.+.+.
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 111111 12346999999999999999999998754
No 310
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.25 E-value=3.8e-11 Score=98.18 Aligned_cols=180 Identities=20% Similarity=0.345 Sum_probs=135.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
+.+|+.|||..++|||+|+++++.+.+.....+.- .....++.++++...+.+.|.+|... ..|...+|++||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 56899999999999999999999998876554442 34566667788888888999988432 346678899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCC--ccccccCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDL--NHLRAVAAEDAQILAE-KEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl--~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv~~~~ 166 (217)
||.+.+.++++.+..+...+.... ...+|+++++++.-. ...+.+...+...++. ...+.+|++.+..|.++..+|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 999999999999887776665443 346788888876543 2234444555555544 445789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCc
Q 042687 167 QTILLDIYHIISKKALAAQEAASSTGLPQGT 197 (217)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (217)
+.+..++.....+++.......+.+.++...
T Consensus 182 ~~~~~k~i~~~~~qq~~~~~~~s~~~s~~~s 212 (749)
T KOG0705|consen 182 QEVAQKIVQLRKYQQLPASSSKSLPESPSHS 212 (749)
T ss_pred HHHHHHHHHHHhhhhcccccccccccCCccc
Confidence 9999999888777776666565555555444
No 311
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.23 E-value=8.1e-11 Score=84.83 Aligned_cols=54 Identities=15% Similarity=0.036 Sum_probs=42.2
Q ss_pred EEEEEeCCCCccccccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 120 IMMAGNKSDLNHLRAVAAEDAQILAEKE--GLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 120 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
=++|+||.|+......+.+...+-+++. +.+++++|+++|.|++++++|+....
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3789999999875555555555555554 47999999999999999999987643
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.23 E-value=2e-10 Score=87.31 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=42.7
Q ss_pred EEEEEecCChh-------------hhccchhhhhcC-CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 042687 62 KAQIWDTAGQE-------------RYRAITSAYYRG-AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS 127 (217)
Q Consensus 62 ~~~i~D~~G~~-------------~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 127 (217)
.+.++|+||-. ....+...|+++ .+++++|+|+...-.-.....+...+.. .+.++++|+||+
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK~ 202 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITKL 202 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEECC
Confidence 57899999953 123345567774 5689999988643222222233333333 378999999999
Q ss_pred CCcc
Q 042687 128 DLNH 131 (217)
Q Consensus 128 Dl~~ 131 (217)
|..+
T Consensus 203 D~~~ 206 (240)
T smart00053 203 DLMD 206 (240)
T ss_pred CCCC
Confidence 9865
No 313
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.5e-10 Score=92.82 Aligned_cols=154 Identities=18% Similarity=0.097 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccc---cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFC---LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
.|+..|+-.-|||||+..+.+..-+ +......+.+........++. .+.++|.||++.+-...-..+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 5788999999999999999875443 222233444444444444443 67899999999998888888889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccccccCHHHHHHHHH---HcCCeEEEecCCCCCCHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRAVAAEDAQILAE---KEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~vSa~~~~gv~~~~ 166 (217)
|+++++.-..+..+. +..+... +++ .++|++|+|+.++..+ .+..+++.. ..+.++|.+|+++|.|++++-
T Consensus 80 vV~~deGl~~qtgEh-L~iLdll---gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 80 VVAADEGLMAQTGEH-LLILDLL---GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred EEeCccCcchhhHHH-HHHHHhc---CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHH
Confidence 999965433333322 2222222 333 5899999998764322 122222222 334689999999999999999
Q ss_pred HHHHHHHH
Q 042687 167 QTILLDIY 174 (217)
Q Consensus 167 ~~l~~~~~ 174 (217)
+.|.+...
T Consensus 155 ~~l~~L~~ 162 (447)
T COG3276 155 NELIDLLE 162 (447)
T ss_pred HHHHHhhh
Confidence 99999774
No 314
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=4.6e-10 Score=92.63 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=98.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcC--------------------ccccCC---------CCCcceeeEEEEEEECCe
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRN--------------------EFCLES---------KSTIGVEFATRTLQVEGK 59 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~--------------------~~~~~~---------~~t~~~~~~~~~~~~~~~ 59 (217)
+...++++++|+..+|||||+.+++.. +.+-.| ....|+.-......++..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 335689999999999999999887542 110000 011222233333344455
Q ss_pred EEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHH-------HHHHHHHHHhhcCCCCeEEEEEeCCCCccc
Q 042687 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN-------VTRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (217)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 132 (217)
...++|+|+|||..|......-...||++|+|+|++-. .|+. ..+....++... -..++|++||.|+.+=
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW 330 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence 56788999999999988888888899999999999742 2222 233333333332 3457889999999752
Q ss_pred cccCHHH----HHHHH-HHcC-----CeEEEecCCCCCCHHHH
Q 042687 133 RAVAAED----AQILA-EKEG-----LSFLETSALEALNVEKA 165 (217)
Q Consensus 133 ~~~~~~~----~~~~~-~~~~-----~~~~~vSa~~~~gv~~~ 165 (217)
.+...++ +..|. ...| +.++++|+.+|.|+-..
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 2222233 33344 3334 56999999999997544
No 315
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.3e-10 Score=91.52 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=81.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc--C------cccc-------CC-----CCCcceeeEEEEEEECCeEEEEEEEecCC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR--N------EFCL-------ES-----KSTIGVEFATRTLQVEGKTVKAQIWDTAG 70 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~--~------~~~~-------~~-----~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 70 (217)
..-..+|+-+|.+|||||..+|+- + .+.. .+ ....++......+.++.....+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 445679999999999999998742 1 1100 00 01234555555555555556778999999
Q ss_pred hhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
|+.|..-....+..+|.+++|+|+...-..+. .+++...+. .++|++=++||.|.+.
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl---R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL---RDIPIFTFINKLDREG 147 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh---cCCceEEEeecccccc
Confidence 99998888888999999999999986433222 233333333 3899999999999765
No 316
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.3e-09 Score=86.14 Aligned_cols=84 Identities=19% Similarity=0.159 Sum_probs=58.1
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC----------------CeEEEEEEEecCCh----
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE----------------GKTVKAQIWDTAGQ---- 71 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~---- 71 (217)
.+++.|+|.||||||||.|+++.........|..+++.......+. -....+.++|++|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999999888653444433444333332221 13456889999993
Q ss_pred ---hhhccchhhhhcCCcEEEEEEeCC
Q 042687 72 ---ERYRAITSAYYRGAVGALLVYDIT 95 (217)
Q Consensus 72 ---~~~~~~~~~~~~~~d~ii~v~d~~ 95 (217)
+.........++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 223334455678999999999985
No 317
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.17 E-value=5.7e-11 Score=91.59 Aligned_cols=155 Identities=18% Similarity=0.152 Sum_probs=99.5
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCC--CCcceeeEEEEEEECCeEEEEEEEecCCh---------hhhccc
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQVEGKTVKAQIWDTAGQ---------ERYRAI 77 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~ 77 (217)
.++..-|.+||..|+|||||+++|.+....+... .|...+..... .... ..+.+.||.|. ..|++.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~--Lpsg-~~vlltDTvGFisdLP~~LvaAF~AT 251 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAH--LPSG-NFVLLTDTVGFISDLPIQLVAAFQAT 251 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhcc--CCCC-cEEEEeechhhhhhCcHHHHHHHHHH
Confidence 3455789999999999999999998654433322 33222222222 2221 24568899992 223332
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe----EEEEEeCCCCccccccCHHHHHHHHHHcCCeEEE
Q 042687 78 TSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV----IMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLE 153 (217)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (217)
. .....+|.++.|.|+++|+.-+.....+..+++..-...| ++=|-||+|..... ... ..+ ..+.
T Consensus 252 L-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e~-------E~n--~~v~ 320 (410)
T KOG0410|consen 252 L-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VEE-------EKN--LDVG 320 (410)
T ss_pred H-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Ccc-------ccC--Cccc
Confidence 2 2356899999999999998766666666666666332233 45577888875422 111 011 2577
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLDIYHII 177 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~~~~~~ 177 (217)
+||.+|+|.+++...+-..+....
T Consensus 321 isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred cccccCccHHHHHHHHHHHhhhhh
Confidence 899999999999998877665543
No 318
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.15 E-value=8.6e-10 Score=86.72 Aligned_cols=115 Identities=17% Similarity=0.295 Sum_probs=73.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccC----------CCCCcceeeEEEEEEECCeEEEEEEEecCChhh-------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE----------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER------- 73 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------- 73 (217)
-.++|+++|+.|+|||||+|.|++...... ..++.........+.-++..++++++||||...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 458999999999999999999998743322 123334444455555678889999999999211
Q ss_pred -------hccchhhhh--------------cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 74 -------YRAITSAYY--------------RGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 74 -------~~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
.......|+ ..++++++.+.++. ..+..+ .+.+..+.. .+.+|-|+.|+|..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence 011111121 24688888887653 233333 233444444 56688889999973
No 319
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.15 E-value=3e-09 Score=79.53 Aligned_cols=97 Identities=25% Similarity=0.218 Sum_probs=66.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhh-------ccchhhhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY-------RAITSAYY 82 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~ 82 (217)
..-||+++|.|.+|||||+..+..-... ..|.+| +.+..+..+.+++. ++++.|.||.-+- .+..-...
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFT-TLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFT-TLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeee-EEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEe
Confidence 3469999999999999999998765433 334444 45666777778775 4679999994221 22233456
Q ss_pred cCCcEEEEEEeCCChhhHHH-HHHHHHHH
Q 042687 83 RGAVGALLVYDITKRQTFDN-VTRWLREL 110 (217)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~-~~~~~~~i 110 (217)
+.||.+++|.|++..+.-.. +++.+..+
T Consensus 138 rtaDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ecccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 88999999999987654432 34444444
No 320
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.14 E-value=2.6e-10 Score=86.17 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=89.4
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCc-----------cccCCCCCc---------------ceeeEEEEEEECC------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNE-----------FCLESKSTI---------------GVEFATRTLQVEG------ 58 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~-----------~~~~~~~t~---------------~~~~~~~~~~~~~------ 58 (217)
..+.|.|-|+||+|||||+++|.... .++.+..|- ....+...+-..+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 45899999999999999999885421 111111110 1111122111111
Q ss_pred ------------eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 042687 59 ------------KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNK 126 (217)
Q Consensus 59 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 126 (217)
..+.+.|++|.|-.... -....-+|.+++|..+.-.+..+.++.-+.++ .=++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeC
Confidence 12456788887732211 12356789999999987666666554433332 23788999
Q ss_pred CCCccccccCHHHHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042687 127 SDLNHLRAVAAEDAQILAEK-------EGLSFLETSALEALNVEKAFQTILLDIYHIISKKA 181 (217)
Q Consensus 127 ~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~vSa~~~~gv~~~~~~l~~~~~~~~~~~~ 181 (217)
+|++.... ...+.+..... +..|++.+||.++.|++++++.|.++.........
T Consensus 177 aD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~ 237 (266)
T PF03308_consen 177 ADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGE 237 (266)
T ss_dssp -SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH
T ss_pred CChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcch
Confidence 99654222 22333333321 23589999999999999999999886655544433
No 321
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.11 E-value=2.2e-09 Score=90.88 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=70.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCC-CCcceeeEEEEEEECCeEEEEEEEecCChhhhc-------c---ch
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGVEFATRTLQVEGKTVKAQIWDTAGQERYR-------A---IT 78 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~---~~ 78 (217)
+..++|+|+|.+|+||||++|.|++........ ...+..........++ ..+.++||||..... . ..
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 456899999999999999999999876433222 1112222222223344 467899999943211 1 11
Q ss_pred hhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCeEEEEEeCCCCcc
Q 042687 79 SAYYR--GAVGALLVYDITKRQTFDNVTRWLRELRDHADS--NIVIMMAGNKSDLNH 131 (217)
Q Consensus 79 ~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~ 131 (217)
..++. ..|++|+|..+........-..++..+...... =..+|||.|..|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 22333 579999998875332211222344444444431 244788899999753
No 322
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=6.9e-10 Score=92.85 Aligned_cols=117 Identities=24% Similarity=0.314 Sum_probs=82.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCC---------------cc--eeeEEEEE---EECCeEEEEEEEec
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKST---------------IG--VEFATRTL---QVEGKTVKAQIWDT 68 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t---------------~~--~~~~~~~~---~~~~~~~~~~i~D~ 68 (217)
++...+|+++|+-++|||+|+..|.....+.-+..+ .+ +......+ ...+..+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 456689999999999999999999876543221111 01 11111112 22456677899999
Q ss_pred CChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 042687 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129 (217)
Q Consensus 69 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 129 (217)
|||-+|.......++.+|++++++|+.+.-.+.. +..+.... ..+.|+++|+||.|+
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai---q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI---QNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH---hccCcEEEEEehhHH
Confidence 9999999888889999999999999987655443 22232222 238999999999996
No 323
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.10 E-value=4.4e-09 Score=83.27 Aligned_cols=129 Identities=18% Similarity=0.229 Sum_probs=86.1
Q ss_pred eEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhcC----CC
Q 042687 49 FATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ-------TFDNVTRWLRELRDHAD----SN 117 (217)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~i~~~~~----~~ 117 (217)
.....+.+.+ ..+.++|.+|+...+.-|..++.+++++|||+++++.+ .-..+.+-+..+...+. .+
T Consensus 185 I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ 262 (354)
T KOG0082|consen 185 IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN 262 (354)
T ss_pred eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence 3344455555 56779999999999999999999999999999998642 12233333444444332 46
Q ss_pred CeEEEEEeCCCCcccc---------------ccCHHHHHHHHH--------H--cCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 118 IVIMMAGNKSDLNHLR---------------AVAAEDAQILAE--------K--EGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 118 ~p~ivv~nK~Dl~~~~---------------~~~~~~~~~~~~--------~--~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
.++++++||.|+-.+. .-..+++..+.. . ..+.+..+.|.+-.+|+.+|..+.+.
T Consensus 263 tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~ 342 (354)
T KOG0082|consen 263 TSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT 342 (354)
T ss_pred CcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence 8999999999983211 011223322211 1 13456677888889999999999998
Q ss_pred HHHHHHH
Q 042687 173 IYHIISK 179 (217)
Q Consensus 173 ~~~~~~~ 179 (217)
+....-+
T Consensus 343 Ii~~nlk 349 (354)
T KOG0082|consen 343 IIQNNLK 349 (354)
T ss_pred HHHHHHH
Confidence 8765443
No 324
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.1e-09 Score=86.07 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=85.9
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCC-CCcceeeEEEEEEECCeE-----------------------
Q 042687 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGVEFATRTLQVEGKT----------------------- 60 (217)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~----------------------- 60 (217)
.+...+...-|+++|+-..||||+|+-|....++.... +..++++....+.-+...
T Consensus 51 ~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~ 130 (532)
T KOG1954|consen 51 EDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN 130 (532)
T ss_pred cCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH
Confidence 44566677899999999999999999999988874432 333344444443322110
Q ss_pred ----------------EEEEEEecCChh-----------hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 042687 61 ----------------VKAQIWDTAGQE-----------RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDH 113 (217)
Q Consensus 61 ----------------~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~ 113 (217)
-.++|+||||.- .|.....=+...+|.||++||+...+--.+.++.+..++.+
T Consensus 131 aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 131 AFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 147899999921 23344455678999999999987655445556666777666
Q ss_pred cCCCCeEEEEEeCCCCcc
Q 042687 114 ADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 114 ~~~~~p~ivv~nK~Dl~~ 131 (217)
+-.+-||+||+|..+
T Consensus 211 ---EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 211 ---EDKIRVVLNKADQVD 225 (532)
T ss_pred ---cceeEEEeccccccC
Confidence 445788999999865
No 325
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.07 E-value=6.1e-10 Score=86.33 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=39.0
Q ss_pred CeEEEEEeCCCCccccccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 118 IVIMMAGNKSDLNHLRAVAAEDAQILAEKE--GLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 118 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
..-++|+||+|+........+......+.. .++++++|+++|.|++++.+||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 446899999999652222233333333333 4789999999999999999999763
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.06 E-value=1.3e-09 Score=80.64 Aligned_cols=95 Identities=20% Similarity=0.110 Sum_probs=66.0
Q ss_pred hhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHH-----HH
Q 042687 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILA-----EK 146 (217)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~ 146 (217)
+.+..++..+++.+|++++|+|+.++.. .|...+.... .+.|+++|+||+|+.... ........+. ..
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhh
Confidence 3457788889999999999999987542 1112221112 368999999999986532 2233333333 22
Q ss_pred cCC---eEEEecCCCCCCHHHHHHHHHHHH
Q 042687 147 EGL---SFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 147 ~~~---~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
.+. +++++||+++.|+++++++|.+.+
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 333 689999999999999999998865
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.06 E-value=6.9e-10 Score=79.43 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=64.7
Q ss_pred hccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEE
Q 042687 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLE 153 (217)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (217)
++.+++..++++|++|+|+|+.++..... ..+...+.. .+.|+++|+||+|+...... .....+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 34566778889999999999987543222 122222222 26899999999998542211 1222333445678999
Q ss_pred ecCCCCCCHHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~~ 173 (217)
+||+++.|++++++.+.+.+
T Consensus 76 iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 76 VSAKERLGTKILRRTIKELA 95 (156)
T ss_pred EEccccccHHHHHHHHHHHH
Confidence 99999999999999998765
No 328
>PRK12289 GTPase RsgA; Reviewed
Probab=99.05 E-value=2.1e-09 Score=86.33 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=67.7
Q ss_pred cchhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEe
Q 042687 76 AITSAYYRGAVGALLVYDITKRQ-TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLET 154 (217)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 154 (217)
.+....+.++|.+++|+|+.++. ....+.+|+..+.. .++|+++|+||+|+...... .........++++++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 34455689999999999998775 44456777665533 37999999999999642221 22223334678899999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 042687 155 SALEALNVEKAFQTILLD 172 (217)
Q Consensus 155 Sa~~~~gv~~~~~~l~~~ 172 (217)
||.++.|+++++++|...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999988653
No 329
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=7.1e-09 Score=82.17 Aligned_cols=143 Identities=15% Similarity=0.278 Sum_probs=87.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccC---------CCCCcceeeEEEEEEECCeEEEEEEEecCChhh-------h
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE---------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------Y 74 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~ 74 (217)
..+.++++|..|.|||||+|.|+...+... ...+.........+.-++..++++++||||-.. |
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 348999999999999999999987644332 112334444445555578889999999999211 1
Q ss_pred -------ccchhhh-----------hc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCcccc
Q 042687 75 -------RAITSAY-----------YR--GAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 75 -------~~~~~~~-----------~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 133 (217)
......| +. .++++++.+.++.. .+..+ ...+..+.. .+.+|-|+.|+|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~~----~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLSK----KVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHhc----cccccceeeccccCCHH
Confidence 1111112 22 57888888887642 22222 122333333 67788899999975422
Q ss_pred cc--CHHHHHHHHHHcCCeEEEecCCC
Q 042687 134 AV--AAEDAQILAEKEGLSFLETSALE 158 (217)
Q Consensus 134 ~~--~~~~~~~~~~~~~~~~~~vSa~~ 158 (217)
++ ....+.+-....++++|....-.
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCCc
Confidence 22 12345555667778877665443
No 330
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=4.6e-09 Score=78.05 Aligned_cols=145 Identities=18% Similarity=0.279 Sum_probs=84.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccC---------CCCCcceeeEEEEEEECCeEEEEEEEecCChhh---hccc-
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE---------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER---YRAI- 77 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~~~~- 77 (217)
..++|+|||.+|.|||||+|.++....... ...|.......-.+.-++...+++++||||... ....
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 458999999999999999999976544321 112223333333344467788899999999211 1111
Q ss_pred ----------hhhh------------hc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCc--
Q 042687 78 ----------TSAY------------YR--GAVGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLN-- 130 (217)
Q Consensus 78 ----------~~~~------------~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~-- 130 (217)
...| +. .++++++.+.++. .++..+ .+++..+.+ -+.++-|+.|+|-.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccccH
Confidence 1122 22 3567777776653 333333 233333333 35577788899953
Q ss_pred cccccCHHHHHHHHHHcCCeEEEecCCCCC
Q 042687 131 HLRAVAAEDAQILAEKEGLSFLETSALEAL 160 (217)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 160 (217)
+++....+.+.+-...+++.+++-.+.+.+
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 223223344555566778888776555543
No 331
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.99 E-value=2.6e-09 Score=83.91 Aligned_cols=88 Identities=15% Similarity=0.061 Sum_probs=68.3
Q ss_pred hhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCC
Q 042687 79 SAYYRGAVGALLVYDITKRQ-TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSAL 157 (217)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 157 (217)
...+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+..... ......+....+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 33478999999999999887 778888888766543 789999999999965321 112233344578899999999
Q ss_pred CCCCHHHHHHHHHH
Q 042687 158 EALNVEKAFQTILL 171 (217)
Q Consensus 158 ~~~gv~~~~~~l~~ 171 (217)
++.|+++++.+|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999988764
No 332
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.97 E-value=1.6e-08 Score=77.72 Aligned_cols=106 Identities=18% Similarity=0.111 Sum_probs=66.5
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHH
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDA 140 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (217)
+.+.|++|.|-..... ....-+|.++++.-+.-.+..+.++.=+.++. =++|+||.|+.... ....+.
T Consensus 144 ~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~-~a~r~l 211 (323)
T COG1703 144 YDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAE-KAAREL 211 (323)
T ss_pred CCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHH-HHHHHH
Confidence 4567888877432221 23456888888877666666666654433332 37889999965421 111121
Q ss_pred HH---HH----H--HcCCeEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q 042687 141 QI---LA----E--KEGLSFLETSALEALNVEKAFQTILLDIYHIIS 178 (217)
Q Consensus 141 ~~---~~----~--~~~~~~~~vSa~~~~gv~~~~~~l~~~~~~~~~ 178 (217)
.. +. . .+.-+++.+||.+|.|++++++.+.++......
T Consensus 212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 11 11 1 123479999999999999999999987755543
No 333
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.95 E-value=1.6e-08 Score=79.97 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=95.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCC--------------cceeeEEEEEEECC-eE------------
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKST--------------IGVEFATRTLQVEG-KT------------ 60 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t--------------~~~~~~~~~~~~~~-~~------------ 60 (217)
..+.-+.|.+.|+.+.|||||+-.|..+..++-...+ .+.+.....+-+++ ..
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 3455689999999999999999998876554332221 11222222222222 11
Q ss_pred --------EEEEEEecCChhhhccch-hhh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 61 --------VKAQIWDTAGQERYRAIT-SAY-YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 61 --------~~~~i~D~~G~~~~~~~~-~~~-~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
.-+.++|+.||+.|-+.. +.. -...|..++++-+++.-+--. ++.+-..... +.|++++++|+|+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a~---~lPviVvvTK~D~~ 268 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALAM---ELPVIVVVTKIDMV 268 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhhh---cCCEEEEEEecccC
Confidence 236799999999875543 322 357899999999887544222 2223222222 89999999999985
Q ss_pred cccccC--HHHHHHH----------------------HHHcC---CeEEEecCCCCCCHHHHHHH
Q 042687 131 HLRAVA--AEDAQIL----------------------AEKEG---LSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 131 ~~~~~~--~~~~~~~----------------------~~~~~---~~~~~vSa~~~~gv~~~~~~ 168 (217)
....+. .+++..+ +-+.+ +|+|.+|+.+|+|++-+.+.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 422111 1111111 11111 58999999999999854443
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=98.95 E-value=3.1e-09 Score=83.94 Aligned_cols=87 Identities=21% Similarity=0.147 Sum_probs=65.0
Q ss_pred hhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCC
Q 042687 81 YYRGAVGALLVYDITKRQTFDN-VTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEA 159 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 159 (217)
.+.++|++++|+|+.++..... +.+|+..+.. .++|+++|+||+|+..... ...+........+++++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3589999999999988765444 4677766554 3799999999999963221 122334445567889999999999
Q ss_pred CCHHHHHHHHHH
Q 042687 160 LNVEKAFQTILL 171 (217)
Q Consensus 160 ~gv~~~~~~l~~ 171 (217)
.|++++++.+..
T Consensus 153 ~gi~~L~~~l~g 164 (298)
T PRK00098 153 EGLDELKPLLAG 164 (298)
T ss_pred ccHHHHHhhccC
Confidence 999999988753
No 335
>PRK12288 GTPase RsgA; Reviewed
Probab=98.94 E-value=7.2e-09 Score=83.18 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=66.9
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc-CHHHHHHHHHHcCCeEEEecCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-AAEDAQILAEKEGLSFLETSALEAL 160 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~vSa~~~~ 160 (217)
..|+|.+++|+++....++..+..|+..+.. .++|.+||+||+|+...... ...+........+++++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 5789999999999877789999999875543 37899999999999653211 1122233345668899999999999
Q ss_pred CHHHHHHHHHH
Q 042687 161 NVEKAFQTILL 171 (217)
Q Consensus 161 gv~~~~~~l~~ 171 (217)
|+++++++|..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999998865
No 336
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.7e-08 Score=78.58 Aligned_cols=145 Identities=18% Similarity=0.140 Sum_probs=96.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC----------cccc-C---CCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN----------EFCL-E---SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR 75 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~----------~~~~-~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (217)
.+-++|.-+|+..-|||||..++..- .++. + .....+++.....+.+.-....+.-.|+|||..|.
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 45589999999999999999887431 1110 0 01223445555555555555567789999999888
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc---ccCHHHHHHHHHHcC----
Q 042687 76 AITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR---AVAAEDAQILAEKEG---- 148 (217)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~---- 148 (217)
.....-..+.|++|+|+.++|..-.+.-+++ ...+... -..+++++||.|+.+.. ++-+.|++++...++
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEHl-LLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd 208 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREHL-LLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD 208 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHHH-HHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 7777777889999999999986533332222 2222221 23477889999997432 334567888888886
Q ss_pred -CeEEEecCC
Q 042687 149 -LSFLETSAL 157 (217)
Q Consensus 149 -~~~~~vSa~ 157 (217)
+|++.-||.
T Consensus 209 ~~PvI~GSAL 218 (449)
T KOG0460|consen 209 NTPVIRGSAL 218 (449)
T ss_pred CCCeeecchh
Confidence 568876654
No 337
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=5.9e-08 Score=72.32 Aligned_cols=164 Identities=19% Similarity=0.199 Sum_probs=97.7
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc-c--hhhhhcCCcEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-I--TSAYYRGAVGA 88 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~--~~~~~~~~d~i 88 (217)
..+|+++|..-+||||+.......-.+.+.-.--.+.. ...-.+.+.-+.+.+||.||+-.+.. . ....++.+.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTsk-i~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSK-ITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCc-ccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 47799999999999999886655432221110000000 01111223457899999999754322 2 35678999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEeCCCCcccc-ccC------HHHHHHHHH----HcCCeEEEec
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHA--DSNIVIMMAGNKSDLNHLR-AVA------AEDAQILAE----KEGLSFLETS 155 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~-~~~------~~~~~~~~~----~~~~~~~~vS 155 (217)
|+|+|+-+. -.+.+.++...+.... +.++.+=+++.|.|-.... .+. ....+.++. ...+.++-+|
T Consensus 106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 999998652 2344444444454443 3577788999999964321 111 111122221 1124466666
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q 042687 156 ALEALNVEKAFQTILLDIYHIIS 178 (217)
Q Consensus 156 a~~~~gv~~~~~~l~~~~~~~~~ 178 (217)
-.+ +.+-++|..+++++..+..
T Consensus 185 IyD-HSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 185 IYD-HSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred ecc-hHHHHHHHHHHHHHhhhch
Confidence 655 6799999999998876643
No 338
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.83 E-value=9.6e-09 Score=77.95 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=92.5
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCC-CcceeeEEEEEEECCeEEEEEEEecCC----------hhhh
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKS-TIGVEFATRTLQVEGKTVKAQIWDTAG----------QERY 74 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~ 74 (217)
+.+.+...+++++|.+|+|||+|+|-++.......... ..+.+.....+.++. .+.++|.|| ...+
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchH
Confidence 34456678999999999999999999988765433332 334344444444444 455999999 2234
Q ss_pred ccchhhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc------ccC-----HHHH
Q 042687 75 RAITSAYYRGA---VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR------AVA-----AEDA 140 (217)
Q Consensus 75 ~~~~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------~~~-----~~~~ 140 (217)
..+...|+.+- --+++++|++.+-.-.+. ..+..+.+. ++|+.+|.||+|..... ... ...+
T Consensus 207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~-~~i~~~ge~---~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 207 DKFTKSYLLERENLVRVFLLVDASVPIQPTDN-PEIAWLGEN---NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHhHHHHHHhhhhhheeeeeeeccCCCCCCCh-HHHHHHhhc---CCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 44555555332 234555566543211111 112222233 89999999999973211 100 0111
Q ss_pred HHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 141 QILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 141 ~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
.........|++.+|+.++.|.+.++--|.+
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhh
Confidence 1111122356778999999999988665543
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=1.2e-08 Score=71.73 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=38.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 71 (217)
+++++|.+|+|||||+|++.+....... ...+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999999987764222 2223334444455554 4679999995
No 340
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.79 E-value=3.1e-08 Score=80.23 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=68.6
Q ss_pred hhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHH----HHHHH
Q 042687 71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQ----ILAEK 146 (217)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~ 146 (217)
.+.|..+...+...++++++|+|+.+... .|...+.+... +.|+++|+||+|+.. +....+++. +++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 45778888888899999999999976441 23333333333 678999999999865 222333333 34556
Q ss_pred cCC---eEEEecCCCCCCHHHHHHHHHHH
Q 042687 147 EGL---SFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 147 ~~~---~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999998653
No 341
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.77 E-value=2.7e-08 Score=71.27 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=37.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 70 (217)
..++|+++|.+|+|||||+|+|.+....... ++.+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999886553222 2223333333333333 255999998
No 342
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.76 E-value=2.7e-08 Score=72.22 Aligned_cols=56 Identities=23% Similarity=0.453 Sum_probs=38.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 70 (217)
..++|+++|.+|+|||||+|+|.+....... ...+++.....+.++. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence 4589999999999999999999987653222 2223333333444433 467999998
No 343
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.75 E-value=4.1e-08 Score=76.55 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=61.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC---------------CeEEEEEEEecCChh---
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE---------------GKTVKAQIWDTAGQE--- 72 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------------~~~~~~~i~D~~G~~--- 72 (217)
..+++.|||.++||||||.|.|.+....+...|..+++.....+.+. ..+..++++|++|.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 45899999999999999999999988876665655555555444442 235578999999932
Q ss_pred ----hhccchhhhhcCCcEEEEEEeCC
Q 042687 73 ----RYRAITSAYYRGAVGALLVYDIT 95 (217)
Q Consensus 73 ----~~~~~~~~~~~~~d~ii~v~d~~ 95 (217)
.........++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 22333445578899999998873
No 344
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.9e-07 Score=77.52 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=83.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
..++.+-|+|+|++|+||||||+.|+..--........+ +.+ -+.+...++++..+|.. ... .....+-||.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~D--l~~-miDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPSD--LHQ-MIDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChHH--HHH-HHhHHHhhhe
Confidence 445678899999999999999999876422111110000 111 13556678889999932 222 2345567899
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccccccCHHHHH-----HHHH-HcCCeEEEecCCCC
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRAVAAEDAQ-----ILAE-KEGLSFLETSALEA 159 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~-----~~~~-~~~~~~~~vSa~~~ 159 (217)
+++++|.+-.-.++.+ ++++.+..+ +.| ++-|++..|+-.........-+ .|.. ..|+.+|.+|...+
T Consensus 137 VlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 137 VLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred eEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 9999999765444444 344555555 666 4568999998542211111111 1111 23678898886543
No 345
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=8.9e-09 Score=79.12 Aligned_cols=162 Identities=19% Similarity=0.163 Sum_probs=97.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCc---cccCCCCCcceeeEEE---EEEEC--------------------------
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNE---FCLESKSTIGVEFATR---TLQVE-------------------------- 57 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~---~~~~~~~t~~~~~~~~---~~~~~-------------------------- 57 (217)
.-.++|.-+|+..-||||++.++.+-. |..+.....+....+. .+.++
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 456999999999999999999876521 1111111110000000 00000
Q ss_pred C------eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 58 G------KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 58 ~------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
+ -...+.++|+|||+..-+.+..-..-.|++++++..+.+..-....+.+..+.-.. =..++++-||+|+..
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~ 193 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIK 193 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhh
Confidence 0 01357899999998766555555555688888877665321111112222222221 245888999999965
Q ss_pred cccc--CHHHHHHHHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 132 LRAV--AAEDAQILAEKE---GLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 132 ~~~~--~~~~~~~~~~~~---~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
+... ..+++..|.... ++|++++||.-+-|++-+.++|+.++
T Consensus 194 e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 194 ESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred HHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 4332 223455555433 57999999999999999999998876
No 346
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.6e-07 Score=74.19 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=91.5
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCC----------------CCc-------ceeeEEEEEEEC----------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK----------------STI-------GVEFATRTLQVE---------- 57 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~----------------~t~-------~~~~~~~~~~~~---------- 57 (217)
-.+|++++|...+|||||+-.|..+..+.... .|. +.+.....+.+.
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 45799999999999999998887665432111 111 111111111111
Q ss_pred CeEEEEEEEecCChhhhccchhhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc--
Q 042687 58 GKTVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR-- 133 (217)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-- 133 (217)
....-++++|.+|+..|....-..+. ..|.+.+|+++...-.+.. ++.+-.+... ++|++++++|.|+....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccccchhH
Confidence 11123679999999988776544433 3577888888876544433 2333444444 89999999999985421
Q ss_pred ----------------------ccCHHHHHHHHH----HcCCeEEEecCCCCCCHHHH
Q 042687 134 ----------------------AVAAEDAQILAE----KEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 134 ----------------------~~~~~~~~~~~~----~~~~~~~~vSa~~~~gv~~~ 165 (217)
.-...++..-++ ..-+|+|.+|+.+|+|++-+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 111222222222 22258999999999998743
No 347
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.9e-07 Score=77.01 Aligned_cols=117 Identities=14% Similarity=0.215 Sum_probs=70.6
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEE-------------------------------------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRT------------------------------------- 53 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~------------------------------------- 53 (217)
...||+|.|..++||||++|+++....-+......+.-+-.+.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 4579999999999999999999876554333211111110000
Q ss_pred ------EEECCeE-----EEEEEEecCChh---hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe
Q 042687 54 ------LQVEGKT-----VKAQIWDTAGQE---RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV 119 (217)
Q Consensus 54 ------~~~~~~~-----~~~~i~D~~G~~---~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 119 (217)
+..+... -.+.++|.||-+ +...-...+...+|++|+|.++.+.....+ +.++...... ...
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CCc
Confidence 0000000 025688999943 444445667789999999999877544333 3334433332 455
Q ss_pred EEEEEeCCCCcc
Q 042687 120 IMMAGNKSDLNH 131 (217)
Q Consensus 120 ~ivv~nK~Dl~~ 131 (217)
+.|+.||.|...
T Consensus 264 iFIlnnkwDasa 275 (749)
T KOG0448|consen 264 IFILNNKWDASA 275 (749)
T ss_pred EEEEechhhhhc
Confidence 777888989744
No 348
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2.1e-08 Score=80.22 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=90.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCc--------cccCC--------CCCcceeeEEEEEEECCeEEEEEEEecCChhhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNE--------FCLES--------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~--------~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (217)
..-+|.|+.+..+||||...|+..-. ++... ....+.+.....+.+++...+++++||||+..|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 34589999999999999999985421 11111 122355666777888999999999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 75 RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
+-..+.+++--|+++.|||.+..-..+.+..|.+ ....++|..+++||+|...
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence 9999999999999999999987665566666654 2334899999999999754
No 349
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.69 E-value=2.6e-06 Score=59.93 Aligned_cols=146 Identities=17% Similarity=0.189 Sum_probs=77.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecC-Ch------------------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA-GQ------------------ 71 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~-G~------------------ 71 (217)
..+||.|-|+||||||||+.++...-....+ .. -.+....+.-++..+=|.++|+. |.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc-ee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4589999999999999999988653221111 11 12334444455555556666665 31
Q ss_pred ---h----hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHH
Q 042687 72 ---E----RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILA 144 (217)
Q Consensus 72 ---~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~ 144 (217)
+ .........+..||++| +|---+-.+.. ..+...+.+....+.|++..+.+.+... -+..+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks-~~f~~~ve~vl~~~kpliatlHrrsr~P-------~v~~ik 150 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKS-KKFREAVEEVLKSGKPLIATLHRRSRHP-------LVQRIK 150 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhcc-HHHHHHHHHHhcCCCcEEEEEecccCCh-------HHHHhh
Confidence 0 11122334456678554 45332222111 3344445555555889888888776422 233333
Q ss_pred HHcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 145 EKEGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 145 ~~~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
...++.+| .+..|-+.++..+...+
T Consensus 151 ~~~~v~v~----lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 151 KLGGVYVF----LTPENRNRILNEILSVL 175 (179)
T ss_pred hcCCEEEE----EccchhhHHHHHHHHHh
Confidence 33334444 34445556666666544
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.68 E-value=6.6e-08 Score=70.27 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=40.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 71 (217)
+..++++++|.+|+|||||+|++.+..+... ....+++.....+.++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3457999999999999999999998776422 2222334444444444 24679999994
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.67 E-value=1.2e-07 Score=67.86 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=57.7
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCC
Q 042687 80 AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEA 159 (217)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 159 (217)
..+..+|++++|+|+.++.... ...+...+... ..++|+++|+||+|+...... ......+...+...++.+||+.+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecccc
Confidence 3567899999999998864211 12222233322 336899999999998642211 11122222222233578999999
Q ss_pred CCHHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLDI 173 (217)
Q Consensus 160 ~gv~~~~~~l~~~~ 173 (217)
.|++++++++.+.+
T Consensus 81 ~~~~~L~~~l~~~~ 94 (157)
T cd01858 81 FGKGSLIQLLRQFS 94 (157)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999987653
No 352
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.67 E-value=1.1e-07 Score=76.25 Aligned_cols=83 Identities=16% Similarity=0.014 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCcc-ccCCCCCcceeeEEEEEEECCe---------------EEEEEEEecCChhh---
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGK---------------TVKAQIWDTAGQER--- 73 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--- 73 (217)
++++|+|.+++|||||.+.|.+... .....+..+.+.....+.+.+. +..+.+.|+||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 4333333333444444444332 23578999999432
Q ss_pred ----hccchhhhhcCCcEEEEEEeCC
Q 042687 74 ----YRAITSAYYRGAVGALLVYDIT 95 (217)
Q Consensus 74 ----~~~~~~~~~~~~d~ii~v~d~~ 95 (217)
........++++|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223445678999999999984
No 353
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.67 E-value=5.3e-07 Score=83.24 Aligned_cols=114 Identities=21% Similarity=0.286 Sum_probs=70.0
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCC----CCCccee-eEEEEEEECCeEEEEEEEecCCh----h----hhccchhh
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLES----KSTIGVE-FATRTLQVEGKTVKAQIWDTAGQ----E----RYRAITSA 80 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~----~~t~~~~-~~~~~~~~~~~~~~~~i~D~~G~----~----~~~~~~~~ 80 (217)
=.+|+|++|+|||||++.- +..++... ..+.+.. .......+.+. ..++||+|. + .....|..
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHH
Confidence 3689999999999999975 44443211 1111110 11122223333 349999992 1 22334555
Q ss_pred hh---------cCCcEEEEEEeCCCh-----hh----HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 81 YY---------RGAVGALLVYDITKR-----QT----FDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 81 ~~---------~~~d~ii~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
++ +..+++|+++|+.+- +. -..+...+.++........|+.|++||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 43 458999999998642 11 12345556666777777999999999999854
No 354
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.63 E-value=7.4e-08 Score=71.20 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=38.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCcccc-------CCCCCcceeeEEEEEEECCeEEEEEEEecCC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL-------ESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 70 (217)
..+++++|.+|+|||||+|+|.+..... ......+++.....+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3689999999999999999998754311 1112224445555555543 457999998
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.61 E-value=3.9e-07 Score=65.11 Aligned_cols=85 Identities=14% Similarity=-0.008 Sum_probs=55.8
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 86 VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+...... ......+....+.+++.+||.++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988765432 22321 1112237899999999998542211 11112233333567899999999999999
Q ss_pred HHHHHHHHH
Q 042687 166 FQTILLDIY 174 (217)
Q Consensus 166 ~~~l~~~~~ 174 (217)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 999887654
No 356
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.61 E-value=1.9e-07 Score=70.42 Aligned_cols=88 Identities=22% Similarity=0.229 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh-------hccchhhhhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYYRG 84 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 84 (217)
-+|.++|.|.+|||||+..|.+-.-. +.+..| +.......+.+.+ -++++.|.||.-+ -........+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyeft-tl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFT-TLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccce-eEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 38999999999999999998764332 223222 2222233333444 3578999999321 11223345678
Q ss_pred CcEEEEEEeCCChhhHHHH
Q 042687 85 AVGALLVYDITKRQTFDNV 103 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~ 103 (217)
++.+++|.|+..|-+...+
T Consensus 137 cnli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred ccEEEEEeeccCcccHHHH
Confidence 9999999999877655544
No 357
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.61 E-value=4e-06 Score=69.59 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=57.2
Q ss_pred EEEEEecCC-------------hhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 042687 62 KAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128 (217)
Q Consensus 62 ~~~i~D~~G-------------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 128 (217)
++.++|.|| .+....+.+.+..+.+++|+|+--.+-+.-.. ..-..+....+.+...|+|++|.|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERS--nVTDLVsq~DP~GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERS--IVTDLVSQMDPHGRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhh--hHHHHHHhcCCCCCeeEEEEeecc
Confidence 467999999 23445667889999999999985433222111 222334555566888999999999
Q ss_pred CccccccCHHHHHHHHHH
Q 042687 129 LNHLRAVAAEDAQILAEK 146 (217)
Q Consensus 129 l~~~~~~~~~~~~~~~~~ 146 (217)
+.+.+-.+...++++...
T Consensus 491 lAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 491 LAEKNVASPSRIQQIIEG 508 (980)
T ss_pred hhhhccCCHHHHHHHHhc
Confidence 988766677777776653
No 358
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.61 E-value=1.6e-07 Score=67.13 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=38.6
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 70 (217)
...+++++|.+|+|||||+|++.+... ....++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 457899999999999999999987553 23334444443333333333 577999998
No 359
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.60 E-value=5.1e-08 Score=69.34 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccc------cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhh
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFC------LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (217)
-++++|++|||||||+|.|...... ........++.....+..+...+ ++||||...+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~---iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGY---IIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEE---EECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcE---EEECCCCCcc
Confidence 5899999999999999999886321 11111112222334445544443 9999996543
No 360
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.60 E-value=1.8e-07 Score=73.55 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=40.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 71 (217)
...++|+|+|.+|||||||+|+|.+....... ...+.+.....+..+. .+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 35689999999999999999999987653322 2223334444444443 3669999995
No 361
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.60 E-value=1.6e-07 Score=73.54 Aligned_cols=57 Identities=19% Similarity=0.358 Sum_probs=40.1
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 71 (217)
..++|+++|.+|||||||+|+|.+....... ...+.+.....+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence 4589999999999999999999987643322 2223334444455543 4579999995
No 362
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.58 E-value=2.6e-07 Score=67.12 Aligned_cols=91 Identities=16% Similarity=0.019 Sum_probs=60.4
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEe
Q 042687 75 RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLET 154 (217)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 154 (217)
.......+.++|++++|+|+.++...... .++..+ .+.|+++|+||+|+...... ....++....+..++.+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 33446678899999999999876432211 122211 15789999999998642211 11212223334578999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 042687 155 SALEALNVEKAFQTILLDI 173 (217)
Q Consensus 155 Sa~~~~gv~~~~~~l~~~~ 173 (217)
||+++.|++++.+.+...+
T Consensus 82 Sa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ECCCcccHHHHHHHHHHHH
Confidence 9999999999999888765
No 363
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=2.6e-07 Score=78.77 Aligned_cols=118 Identities=15% Similarity=0.209 Sum_probs=81.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccC--------------CCCCcceeeEEEEEEECCeEEEEEEEecCChhh
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLE--------------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (217)
..+..-+|+++-+...|||||...|+....-.. ...+.+.+-....+..-...+.++++|+|||-.
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 445667999999999999999999876432111 112223333333334434556788999999999
Q ss_pred hccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 042687 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129 (217)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 129 (217)
|.+.......-+|++++++|+...-+-+...-+.+.+.+ +...++|+||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----GLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----cCceEEEEehhhh
Confidence 999999999999999999999765444442222222222 5667889999994
No 364
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.56 E-value=6.4e-06 Score=66.63 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=85.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCcc-----------------ccC----CCCCcceeeE---EEEEEE-CCeEEEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEF-----------------CLE----SKSTIGVEFA---TRTLQV-EGKTVKAQI 65 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~-----------------~~~----~~~t~~~~~~---~~~~~~-~~~~~~~~i 65 (217)
..+=|.||||.-+||||||.||...-+ +.. ...|+.-.+. ...+.+ ++..+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 346789999999999999999965311 111 1111111121 233444 567889999
Q ss_pred EecCCh-------------hhh-ccchh---------------hhh--cCCcEEEEEEeCC--C--hhhHHHH-HHHHHH
Q 042687 66 WDTAGQ-------------ERY-RAITS---------------AYY--RGAVGALLVYDIT--K--RQTFDNV-TRWLRE 109 (217)
Q Consensus 66 ~D~~G~-------------~~~-~~~~~---------------~~~--~~~d~ii~v~d~~--~--~~s~~~~-~~~~~~ 109 (217)
+||.|- +++ ..-|. ..+ +..-++++.-|.+ + ++.+..+ ++.+..
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999981 000 00011 011 1234566665653 2 4444444 455555
Q ss_pred HHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCC
Q 042687 110 LRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALE 158 (217)
Q Consensus 110 i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 158 (217)
+++. ++|+++++|-.+..... ..+...++..+++++++++++..
T Consensus 176 Lk~i---gKPFvillNs~~P~s~e--t~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 176 LKEI---GKPFVILLNSTKPYSEE--TQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHHh---CCCEEEEEeCCCCCCHH--HHHHHHHHHHHhCCcEEEeehHH
Confidence 6555 99999999998854322 24456777888899999887653
No 365
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.53 E-value=2e-07 Score=74.30 Aligned_cols=57 Identities=19% Similarity=0.337 Sum_probs=42.6
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 71 (217)
..++++|+|.+|||||||||+|.+....... +..|.+.....+.++.. +.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCc
Confidence 3478999999999999999999998763332 33355566666666654 569999994
No 366
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.48 E-value=1.9e-06 Score=68.46 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=81.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCcccc----------------CCCCCcceeeEEEEEE-------------------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL----------------ESKSTIGVEFATRTLQ------------------- 55 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~------------------- 55 (217)
...+|+++|...+|||||+-.|..+..+. ++..|........-++
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 34799999999999999997665543211 1111111111111111
Q ss_pred --ECCeEEEEEEEecCChhhhccchhh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 56 --VEGKTVKAQIWDTAGQERYRAITSA--YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 56 --~~~~~~~~~i~D~~G~~~~~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
+.+..--++++|.+|++.|-...-. .-.-.|...+++-++-.- .-..++.+-.... ..+|+++|++|+|+..
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa---L~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA---LHVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh---hcCcEEEEEEeeccCc
Confidence 1122234789999999987654322 123346666666554321 1111222222222 2899999999999854
Q ss_pred ccccCHH--HHH--------------------------HHHHHcCCeEEEecCCCCCCHHHH
Q 042687 132 LRAVAAE--DAQ--------------------------ILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 132 ~~~~~~~--~~~--------------------------~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
.+.+.+. .+. .|..+.-+|+|.+|-.+|.|++-+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 3222111 111 122222367899999999998733
No 367
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.48 E-value=6e-07 Score=63.10 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=52.3
Q ss_pred hhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecC
Q 042687 79 SAYYRGAVGALLVYDITKRQTFD--NVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSA 156 (217)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 156 (217)
...+..+|++++|+|+.++.+.. .+.+|+. ... .++|+++|+||+|+..... ..+........+.+++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVK---EVD-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHH---hcc-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 45678999999999998876533 3333333 222 3789999999999864322 22344455566788999999
Q ss_pred CCCCC
Q 042687 157 LEALN 161 (217)
Q Consensus 157 ~~~~g 161 (217)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 88753
No 368
>PRK01889 GTPase RsgA; Reviewed
Probab=98.46 E-value=9.1e-07 Score=71.61 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=59.2
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEecCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAE-KEGLSFLETSALEAL 160 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~ 160 (217)
..++|.+++|+++...-....+++++..+... +++.+||+||+|+.+... .....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence 57999999999996444444556666555444 778899999999965311 11222222 456899999999999
Q ss_pred CHHHHHHHHH
Q 042687 161 NVEKAFQTIL 170 (217)
Q Consensus 161 gv~~~~~~l~ 170 (217)
|++++..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999988874
No 369
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.45 E-value=6.3e-07 Score=64.01 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=37.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAG 70 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 70 (217)
....+|+++|.+|+|||||+|.+.+.... ....+..+.. ...+..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence 34588999999999999999999986532 2222222222 2223333 2467999998
No 370
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.45 E-value=1.1e-06 Score=68.72 Aligned_cols=99 Identities=16% Similarity=0.058 Sum_probs=64.3
Q ss_pred CChh-hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHc
Q 042687 69 AGQE-RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKE 147 (217)
Q Consensus 69 ~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (217)
|||- .........+..+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+... ...........
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence 5543 223334567889999999999977644222 1111112 1679999999999864221 11222222334
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 042687 148 GLSFLETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 148 ~~~~~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
+.+++.+||.++.|++++.+.+.+.+.+
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 5688999999999999999988876644
No 371
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.42 E-value=2.8e-06 Score=64.39 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=52.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC--ccccCCC---CCcceeeEEEEEEECCeEEEEEEEecCChhhh------ccch
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN--EFCLESK---STIGVEFATRTLQVEGKTVKAQIWDTAGQERY------RAIT 78 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~--~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~ 78 (217)
.+..-|.|+|++++|||+|+|.|.+. .+..... .|.+.-.....+. .+....+.++||+|.... ....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhhH
Confidence 35578999999999999999999998 6653332 2222111111111 123357889999995422 1122
Q ss_pred hhhhcC--CcEEEEEEeCCC
Q 042687 79 SAYYRG--AVGALLVYDITK 96 (217)
Q Consensus 79 ~~~~~~--~d~ii~v~d~~~ 96 (217)
...+.. +|++|+..+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 233333 788888777654
No 372
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=9e-07 Score=73.98 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=82.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCcccc---CCC-------------CCcceeeEEEEEEECCeEEEEEEEecCChhh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL---ESK-------------STIGVEFATRTLQVEGKTVKAQIWDTAGQER 73 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~---~~~-------------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (217)
+..-+|.+.-+-.+||||+.+++..-..-. ... ...+++.......+.+..++++++|||||-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 345689999999999999999875421100 000 1113333333344455577899999999999
Q ss_pred hccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccc
Q 042687 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (217)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 132 (217)
|.-..+..++-.|++|++++....-.-+...-|.+. ..+++|.+.++||.|....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~----~ry~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM----KRYNVPRICFINKMDRMGA 171 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHH----HhcCCCeEEEEehhhhcCC
Confidence 988889999999999999998765443444455432 2338999999999997553
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=98.38 E-value=8.5e-07 Score=71.34 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=35.7
Q ss_pred EEEEcCCCCCHHHHHhHHhcCccccCC------CCCcceeeEEEEEEECCeEEEEEEEecCChhhhc
Q 042687 15 IVLIGDSGVGKSNILSRFTRNEFCLES------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR 75 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (217)
++|+|.+|||||||+|+|.+....... .....++.....+.+.+.. .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 789999999999999999876432111 1111122223334443322 399999976544
No 374
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.38 E-value=2.8e-06 Score=60.90 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-+++.|..|+|||||++++...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999998765
No 375
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=7.1e-06 Score=61.77 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=96.5
Q ss_pred eEEEEEcCCCC--CHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 13 FKIVLIGDSGV--GKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 13 ~~i~i~G~~~~--GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
.-++|+|..|+ ||.+|+.+|....+.........+.+...++........+.+.-.+--+++.-..........++++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 46789999999 9999999998887766555444445555443322211112221111112221112223345578999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc------------------ccc------------------
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH------------------LRA------------------ 134 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------------~~~------------------ 134 (217)
+||++....+..+..|+....-. .--.+++++||.|... .+.
T Consensus 85 vfdlse~s~l~alqdwl~htdin--sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl 162 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDIN--SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL 162 (418)
T ss_pred EEeccchhhhHHHHhhccccccc--cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence 99999988899998887532111 0122567899999621 000
Q ss_pred --------cCHHHHHHHHHHcCCeEEEecCCC------------CCCHHHHHHHHHHHHHH
Q 042687 135 --------VAAEDAQILAEKEGLSFLETSALE------------ALNVEKAFQTILLDIYH 175 (217)
Q Consensus 135 --------~~~~~~~~~~~~~~~~~~~vSa~~------------~~gv~~~~~~l~~~~~~ 175 (217)
.......+|+.+.++.+++.++.. ..|++.+|..|-.++..
T Consensus 163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp 223 (418)
T KOG4273|consen 163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP 223 (418)
T ss_pred cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence 011234677888899999988743 25678888777665543
No 376
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.36 E-value=8e-07 Score=69.04 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=39.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC------ccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN------EFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR 75 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 75 (217)
-.+++|++|||||||+|+|... ..+........++.....+.+++..+ ++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 5789999999999999999763 22233323333344455566654443 99999976544
No 377
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.35 E-value=2.7e-06 Score=66.94 Aligned_cols=100 Identities=17% Similarity=0.116 Sum_probs=65.1
Q ss_pred cCChh-hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHH
Q 042687 68 TAGQE-RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK 146 (217)
Q Consensus 68 ~~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (217)
.|||- .-.......+..+|++++|+|+.++.+... .++.... . +.|+++|+||+|+.+... ......+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 46653 223334567889999999999977644222 1122211 1 688999999999864211 1122222334
Q ss_pred cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 042687 147 EGLSFLETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 147 ~~~~~~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
.+.+++.+|+.++.|++++.+.+.+.+.+
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 46788999999999999999988876644
No 378
>PRK13796 GTPase YqeH; Provisional
Probab=98.33 E-value=4.3e-06 Score=68.01 Aligned_cols=92 Identities=20% Similarity=0.272 Sum_probs=60.0
Q ss_pred hhccchhhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHH----HHHHHc
Q 042687 73 RYRAITSAYYRGAV-GALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQ----ILAEKE 147 (217)
Q Consensus 73 ~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~ 147 (217)
.|...... +..++ .+++|+|+.|.. ..|...+..... +.|+++|+||+|+.. .....+++. .++...
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence 44444433 34445 899999997743 123333333333 678999999999964 222233333 335555
Q ss_pred CC---eEEEecCCCCCCHHHHHHHHHHH
Q 042687 148 GL---SFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 148 ~~---~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999998653
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.33 E-value=1.4e-05 Score=62.33 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=55.7
Q ss_pred EEEEEEecCChhhhccch----h---hhh-----cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 042687 61 VKAQIWDTAGQERYRAIT----S---AYY-----RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~----~---~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 128 (217)
+.+.++||||........ . ... ...|..++|+|++... +.+.. ...+.+.. .+.-+|+||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhhC---CCCEEEEEccC
Confidence 567899999964322111 1 111 2378999999997532 23222 22333221 23568899999
Q ss_pred CccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 129 LNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
.... .-.+..+....+.|+..++ +|.+++++-..
T Consensus 229 e~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 229 GTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred CCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 6431 2234445556688988887 66777776443
No 380
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.31 E-value=1.1e-05 Score=66.41 Aligned_cols=86 Identities=14% Similarity=0.033 Sum_probs=46.3
Q ss_pred EEEEEEEecCChhhhccc----hhhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc
Q 042687 60 TVKAQIWDTAGQERYRAI----TSAY--YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 133 (217)
.+.+.|+||+|....... ...+ ....|-+++|.|++-.+... .....+.+. -.+.-+|+||.|... +
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~a-r 254 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHA-K 254 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCC-C
Confidence 356789999995322111 1111 23567899999986543222 222333332 235678899999643 1
Q ss_pred ccCHHHHHHHHHHcCCeEEEec
Q 042687 134 AVAAEDAQILAEKEGLSFLETS 155 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~vS 155 (217)
.-.+..+....+.|+..++
T Consensus 255 ---gG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 255 ---GGGALSAVAATKSPIIFIG 273 (429)
T ss_pred ---ccHHhhhHHHHCCCeEEEc
Confidence 1123334445566655553
No 381
>PRK14974 cell division protein FtsY; Provisional
Probab=98.30 E-value=1e-05 Score=64.76 Aligned_cols=96 Identities=16% Similarity=0.062 Sum_probs=55.1
Q ss_pred EEEEEEecCChhhhcc----chhhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 61 VKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
+.+.++||+|...... ..... ....|..++|.|+...+. .......+.... .+--+|+||.|... +
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~---~~~giIlTKlD~~~-~- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV---GIDGVILTKVDADA-K- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC---CCCEEEEeeecCCC-C-
Confidence 4578999999542111 11111 235788899999865431 111122232221 22467889999753 1
Q ss_pred cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 135 VAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
.-.+-.++...+.|+..++ +|.+++++..+
T Consensus 295 --~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 295 --GGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred --ccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 1234444555688988886 68888877543
No 382
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=7.3e-06 Score=74.51 Aligned_cols=113 Identities=24% Similarity=0.299 Sum_probs=65.8
Q ss_pred EEEEcCCCCCHHHHHhHHhcCccccCC-C--CCc-ceeeEEEEEEECCeEEEEEEEecCCh--------hhhccchhhh-
Q 042687 15 IVLIGDSGVGKSNILSRFTRNEFCLES-K--STI-GVEFATRTLQVEGKTVKAQIWDTAGQ--------ERYRAITSAY- 81 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~~~~~~~-~--~t~-~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~- 81 (217)
-+|+|++|+||||++.. .+..|+... . ... +........-+.+ .-.++||.|. +.....|..+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 47999999999999974 333332111 1 110 1110111112223 3449999992 1334445544
Q ss_pred --------hcCCcEEEEEEeCCCh-----hh----HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 82 --------YRGAVGALLVYDITKR-----QT----FDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 82 --------~~~~d~ii~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
.+..++||+..|+++- .. ...+..-+.++.+......|++|++||.|+..
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2568999999998642 11 12233334556666667899999999999864
No 383
>PRK12289 GTPase RsgA; Reviewed
Probab=98.30 E-value=1.3e-06 Score=70.27 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=34.8
Q ss_pred EEEEcCCCCCHHHHHhHHhcCccccCC------CCCcceeeEEEEEEECCeEEEEEEEecCChhh
Q 042687 15 IVLIGDSGVGKSNILSRFTRNEFCLES------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (217)
++|+|++|||||||+|+|.+....... .....++.....+.+.+.. .++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 799999999999999999875432111 1111122333444453322 4999999643
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.30 E-value=1.4e-06 Score=70.87 Aligned_cols=56 Identities=18% Similarity=0.375 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccc----cCCCCCcceeeEEEEEEECCeEEEEEEEecCCh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFC----LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 71 (217)
.++.|+|.+|||||||+|+|...... ....+..+++.....+.+++. ..++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 47999999999999999999854311 111122233344444545443 259999995
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.29 E-value=1.7e-06 Score=66.44 Aligned_cols=56 Identities=23% Similarity=0.222 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccC------CCCCcceeeEEEEEEECCeEEEEEEEecCChhh
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLE------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (217)
.++++|++|||||||+|+|.+...... ......++.....+...+. .++||||-..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccc
Confidence 689999999999999999987533211 1111112222333334332 4999999654
No 386
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=4.4e-06 Score=63.76 Aligned_cols=117 Identities=25% Similarity=0.380 Sum_probs=69.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCC----cceeeEEEEEEECCeEEEEEEEecCCh-------hhh----
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKST----IGVEFATRTLQVEGKTVKAQIWDTAGQ-------ERY---- 74 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~---- 74 (217)
...++|+-+|..|.|||||+..|++-.+.....+. .........+.-.+..++++++||.|- +.|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 35689999999999999999999998876544322 222222222223566788999999991 111
Q ss_pred ---ccchhhh-------------hc--CCcEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 75 ---RAITSAY-------------YR--GAVGALLVYDITKRQTFDNVTR-WLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 75 ---~~~~~~~-------------~~--~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
.+....| +. ..+++++.+.++ ..++..+.- .+..+. ..+.+|-++.|+|-..
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence 1112222 23 356666666665 345555422 122222 2566777788888643
No 387
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.27 E-value=1.9e-05 Score=62.86 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=78.5
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccC-------CCC--------------CcceeeEEEEEEE-------------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE-------SKS--------------TIGVEFATRTLQV------------- 56 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~-------~~~--------------t~~~~~~~~~~~~------------- 56 (217)
..--|+++|++|+||||++..|...-.... .+. -.+..+.......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 346889999999999999998854211000 000 0011111100000
Q ss_pred CCeEEEEEEEecCChhhhccc----hhhh--------hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q 042687 57 EGKTVKAQIWDTAGQERYRAI----TSAY--------YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAG 124 (217)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~ 124 (217)
....+.+.++||||....... .... -...+..++|.|++... ..+... ..+.+. -.+.-+|+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIl 266 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIIL 266 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEE
Confidence 012346789999995321111 1111 12467789999998532 222221 222222 12346888
Q ss_pred eCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 125 NKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 125 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
||.|... + .-.+..++...++|+..++ +|.+++++-.
T Consensus 267 TKlD~t~-~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 267 TKLDGTA-K---GGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred ECCCCCC-C---ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 9999543 1 2234555667799999887 6777777643
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.26 E-value=2.5e-06 Score=69.27 Aligned_cols=57 Identities=16% Similarity=0.360 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccc----cCCCCCcceeeEEEEEEECCeEEEEEEEecCChh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFC----LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 72 (217)
.+|+++|.+|||||||+|+|.+.... .......+++.....+.+++. +.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 58999999999999999999875321 111122233344444555332 3599999943
No 389
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.23 E-value=1.3e-05 Score=62.49 Aligned_cols=93 Identities=17% Similarity=0.095 Sum_probs=67.5
Q ss_pred cchhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEe
Q 042687 76 AITSAYYRGAVGALLVYDITKRQ-TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLET 154 (217)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 154 (217)
.+.+....+.|-+++|+.+.+|+ +...+.+++-..... ++..+|++||+|+.........+........+++++.+
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 33444456688889999998876 555556655444333 67778889999997644433345566677789999999
Q ss_pred cCCCCCCHHHHHHHHHH
Q 042687 155 SALEALNVEKAFQTILL 171 (217)
Q Consensus 155 Sa~~~~gv~~~~~~l~~ 171 (217)
|++++.|++++..++..
T Consensus 148 s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 148 SAKNGDGLEELAELLAG 164 (301)
T ss_pred cCcCcccHHHHHHHhcC
Confidence 99999999999887754
No 390
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.19 E-value=2e-05 Score=58.97 Aligned_cols=75 Identities=27% Similarity=0.255 Sum_probs=46.0
Q ss_pred EEEEec-CChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC-CeEEEEEeCCCCccccccCHHHH
Q 042687 63 AQIWDT-AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSN-IVIMMAGNKSDLNHLRAVAAEDA 140 (217)
Q Consensus 63 ~~i~D~-~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~p~ivv~nK~Dl~~~~~~~~~~~ 140 (217)
+.++|| +|.+.|. +...+++|.+|.|.|++ ..++...++......+. + .++.+|+||.|-. ....
T Consensus 136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS-~~sl~taeri~~L~~el---g~k~i~~V~NKv~e~------e~~~ 202 (255)
T COG3640 136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPS-YKSLRTAERIKELAEEL---GIKRIFVVLNKVDEE------EELL 202 (255)
T ss_pred EEEEecccchhhhc---cccccCCCEEEEEeCCc-HHHHHHHHHHHHHHHHh---CCceEEEEEeeccch------hHHH
Confidence 445555 3333222 34567899999999997 45666665544433333 4 7899999999843 2334
Q ss_pred HHHHHHcCCe
Q 042687 141 QILAEKEGLS 150 (217)
Q Consensus 141 ~~~~~~~~~~ 150 (217)
...+...+.+
T Consensus 203 ~~~~~~~~~~ 212 (255)
T COG3640 203 RELAEELGLE 212 (255)
T ss_pred HhhhhccCCe
Confidence 4445555544
No 391
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.13 E-value=3.3e-06 Score=69.42 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=41.5
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 71 (217)
.+.|++||.|||||||+||.|++.+.-. -..|.|-+..-.++.+.. .+.+.||||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 5899999999999999999999987632 234445445555555554 3459999994
No 392
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=2e-05 Score=63.83 Aligned_cols=137 Identities=16% Similarity=0.121 Sum_probs=70.6
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCcccc---CCCCCcceee------------------EEEEEEEC---------CeEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL---ESKSTIGVEF------------------ATRTLQVE---------GKTV 61 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~---~~~~t~~~~~------------------~~~~~~~~---------~~~~ 61 (217)
.-.++|+|++||||||++.+|....... ......+.+. ......-. ....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3578899999999999999986532110 0000000000 00000000 0123
Q ss_pred EEEEEecCChhhhccch---hhhh---cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--C---CCeEEEEEeCCCC
Q 042687 62 KAQIWDTAGQERYRAIT---SAYY---RGAVGALLVYDITKR-QTFDNVTRWLRELRDHAD--S---NIVIMMAGNKSDL 129 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~~~---~~~~---~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~---~~p~ivv~nK~Dl 129 (217)
.+.++||+|........ ...+ ...+-.++|++++.. +.+..+ +..+..... . .-+--+|+||.|.
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---VQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---HHHHHHhhcccccccCCCCEEEEecccc
Confidence 57899999954322211 1112 233456888888753 333333 333332210 0 0123578899995
Q ss_pred ccccccCHHHHHHHHHHcCCeEEEec
Q 042687 130 NHLRAVAAEDAQILAEKEGLSFLETS 155 (217)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~vS 155 (217)
.. ..-.+..+....+.|+..++
T Consensus 294 t~----~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 294 AS----NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred CC----CccHHHHHHHHHCcCeEEEe
Confidence 43 22345666777788877664
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=98.12 E-value=5.8e-06 Score=65.42 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCC-C-----CcceeeEEEEEEECCeEEEEEEEecCChhh
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESK-S-----TIGVEFATRTLQVEGKTVKAQIWDTAGQER 73 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~-~-----t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 73 (217)
.++++|++|||||||+|.|.+........ + ...++.....+.+++.. .++||||-..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~---~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGG---LLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCc---EEEECCCcCc
Confidence 58999999999999999998754322111 0 01112223333344322 4999999743
No 394
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.12 E-value=7.4e-06 Score=64.49 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=36.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCC------CCcceeeEEEEEEECCeEEEEEEEecCChhhh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESK------STIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (217)
-.++++|++|+|||||+|.|.+........ ....++.....+...+.. .++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 469999999999999999998764322111 111122223334443222 49999998654
No 395
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.11 E-value=4.4e-05 Score=55.18 Aligned_cols=135 Identities=17% Similarity=0.231 Sum_probs=63.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEec-CCh---------------------
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDT-AGQ--------------------- 71 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~-~G~--------------------- 71 (217)
||+|-|++|+|||||+++++..-... ..+. ..+....+.-++..+-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987532111 1111 1122222233344444445554 221
Q ss_pred -hhhcc----chhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC-CCccccccCHHHHHHHHH
Q 042687 72 -ERYRA----ITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKS-DLNHLRAVAAEDAQILAE 145 (217)
Q Consensus 72 -~~~~~----~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~ 145 (217)
+.+.. .....+..+| ++++|---+-.+. ...|...+......++|++.++.+. +.+ -++.+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s~~~vi~vv~~~~~~~--------~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDSNKPVIGVVHKRSDNP--------FLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS--SC--------CHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcCCCcEEEEEecCCCcH--------HHHHHHh
Confidence 11111 1122234666 6666742211000 0223334444444588988888776 321 3455666
Q ss_pred HcCCeEEEecCCCCCCH
Q 042687 146 KEGLSFLETSALEALNV 162 (217)
Q Consensus 146 ~~~~~~~~vSa~~~~gv 162 (217)
..++.+++++..+.+-+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 67788998876655443
No 396
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.09 E-value=8.2e-05 Score=61.20 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=79.1
Q ss_pred eEEEEEEE-CCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhcC----C
Q 042687 49 FATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ-------TFDNVTRWLRELRDHAD----S 116 (217)
Q Consensus 49 ~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~i~~~~~----~ 116 (217)
.....+.+ ++ ..+.++|++|+...+..|..++.+++++|||+++++-+ ....+.+-+..+...+. .
T Consensus 225 i~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~ 302 (389)
T PF00503_consen 225 ITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFK 302 (389)
T ss_dssp EEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccc
Confidence 33344445 44 46779999999999999999999999999999986522 11223333333333322 4
Q ss_pred CCeEEEEEeCCCCcc------c-----------c-ccCHHHHHHHHHH------------cCCeEEEecCCCCCCHHHHH
Q 042687 117 NIVIMMAGNKSDLNH------L-----------R-AVAAEDAQILAEK------------EGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 117 ~~p~ivv~nK~Dl~~------~-----------~-~~~~~~~~~~~~~------------~~~~~~~vSa~~~~gv~~~~ 166 (217)
+.|++|++||.|+-. . . .-....+..+... ..+.+..++|.+...+..+|
T Consensus 303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~ 382 (389)
T PF00503_consen 303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVF 382 (389)
T ss_dssp TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHH
T ss_pred cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHH
Confidence 799999999999721 0 0 0223344333321 22356788999888899999
Q ss_pred HHHHHHH
Q 042687 167 QTILLDI 173 (217)
Q Consensus 167 ~~l~~~~ 173 (217)
+.+.+.+
T Consensus 383 ~~v~~~i 389 (389)
T PF00503_consen 383 NAVKDII 389 (389)
T ss_dssp HHHHHHH
T ss_pred HHhcCcC
Confidence 8887643
No 397
>PRK13695 putative NTPase; Provisional
Probab=98.06 E-value=0.00016 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
++|+|.|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 398
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.01 E-value=8e-05 Score=55.26 Aligned_cols=85 Identities=18% Similarity=0.087 Sum_probs=46.8
Q ss_pred EEEEEEecCChhhhcc----chhhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 61 VKAQIWDTAGQERYRA----ITSAYY--RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
+.+.++||+|...... .+..++ ...+-+++|.+++... +.+..+.. +.... + +--++++|.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~-~~~~~--~-~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALA-FYEAF--G-IDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHH-HHHHS--S-TCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHH-Hhhcc--c-CceEEEEeecCCC---
Confidence 3477999999432211 111111 2567788999987643 23322222 22221 1 2256789999643
Q ss_pred cCHHHHHHHHHHcCCeEEEec
Q 042687 135 VAAEDAQILAEKEGLSFLETS 155 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~vS 155 (217)
..-.+-.++...+.|+-.++
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEE
T ss_pred -CcccceeHHHHhCCCeEEEE
Confidence 22346667777888877775
No 399
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.00 E-value=0.00011 Score=59.54 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=71.8
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCcc--ccCCC-CCcceeeEE-EE--------------EEE--C----------CeEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEF--CLESK-STIGVEFAT-RT--------------LQV--E----------GKTV 61 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~--~~~~~-~t~~~~~~~-~~--------------~~~--~----------~~~~ 61 (217)
.-.|++|||.||||||-+.+|..... ...+. .-.+++.+. .. +.. . -..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45799999999999999988865433 11110 001111110 00 000 0 0123
Q ss_pred EEEEEecCChhhhccc----hhhhhcCC--cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc
Q 042687 62 KAQIWDTAGQERYRAI----TSAYYRGA--VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 135 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~~----~~~~~~~~--d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (217)
.+.++||.|...+... ...++..+ .-.-+|++++. ..+.+++.+..++... . --+++||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~---i-~~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFP---I-DGLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccCC---c-ceeEEEcccccC----
Confidence 5789999996543333 23333322 33455666654 2355666666655432 1 246779999543
Q ss_pred CHHHHHHHHHHcCCeEEEec
Q 042687 136 AAEDAQILAEKEGLSFLETS 155 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~vS 155 (217)
..-..-.+..+.+.|+-.++
T Consensus 353 s~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred chhHHHHHHHHhCCCeEEEe
Confidence 23345556666677766654
No 400
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=0.0001 Score=59.87 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCcc---------ccCCCC------------CcceeeEEEE--------E-EEC-CeEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEF---------CLESKS------------TIGVEFATRT--------L-QVE-GKTV 61 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~------------t~~~~~~~~~--------~-~~~-~~~~ 61 (217)
..|+|+|+.||||||++.+|...-. ..+... ..+..+.... + ... ...+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 5799999999999999999854211 000000 0011111000 0 000 0124
Q ss_pred EEEEEecCChhhhcc----chhhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc
Q 042687 62 KAQIWDTAGQERYRA----ITSAYY--RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 135 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (217)
.+.|+||+|...... ....++ ...+.+++|.|++-.. ..+..++..+... .+--+|+||.|-..
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~---- 391 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA---- 391 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCC----
Confidence 678999999532111 112222 2356788888875322 2333444444432 22357789999643
Q ss_pred CHHHHHHHHHHcCCeEEEec
Q 042687 136 AAEDAQILAEKEGLSFLETS 155 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~vS 155 (217)
..-.+-.++...++|+..++
T Consensus 392 k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred CccHHHHHHHHHCcCEEEEe
Confidence 22345666777788877664
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.98 E-value=5.8e-05 Score=54.85 Aligned_cols=83 Identities=18% Similarity=0.076 Sum_probs=45.4
Q ss_pred EEEEEEecCChhhh----ccchhhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 61 VKAQIWDTAGQERY----RAITSAY--YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 61 ~~~~i~D~~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
..+.++|++|...+ ......+ ....|.+++|+|+..... .+ .+...+.... + ...+|.||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~--~-~~~viltk~D~~~~-- 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL--G-ITGVILTKLDGDAR-- 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC--C-CCEEEEECCcCCCC--
Confidence 35678999996422 1111112 134899999999865432 22 2333333322 2 35677799996541
Q ss_pred cCHHHHHHHHHHcCCeEEE
Q 042687 135 VAAEDAQILAEKEGLSFLE 153 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ 153 (217)
...+...+...++|+..
T Consensus 155 --~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 155 --GGAALSIRAVTGKPIKF 171 (173)
T ss_pred --cchhhhhHHHHCcCeEe
Confidence 12233366666776543
No 402
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=9.3e-05 Score=60.94 Aligned_cols=142 Identities=18% Similarity=0.124 Sum_probs=73.6
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCcccc---CCC-----CC---------------cceeeEEEEEE-------ECCeEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL---ESK-----ST---------------IGVEFATRTLQ-------VEGKTV 61 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~---~~~-----~t---------------~~~~~~~~~~~-------~~~~~~ 61 (217)
.-.|+++|+.|+||||++.+|.+..... ... .+ .+.......-. ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 4589999999999999999886531100 000 00 00000000000 000122
Q ss_pred EEEEEecCChhhh----ccchhhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc
Q 042687 62 KAQIWDTAGQERY----RAITSAYY--RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 135 (217)
Q Consensus 62 ~~~i~D~~G~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (217)
.+.++||+|.... ......+. ....-.++|.|++.. ...+..++..+... -+--+|+||.|-..
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~----~~~~~I~TKlDEt~---- 340 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH----GIHGCIITKVDEAA---- 340 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeeeCCC----
Confidence 4679999994321 11122221 223457788888742 23333444444322 22357889999643
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCH-HHH
Q 042687 136 AAEDAQILAEKEGLSFLETSALEALNV-EKA 165 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~vSa~~~~gv-~~~ 165 (217)
..-.+-.++...++|+..++ +|.++ +++
T Consensus 341 ~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl 369 (420)
T PRK14721 341 SLGIALDAVIRRKLVLHYVT--NGQKVPEDL 369 (420)
T ss_pred CccHHHHHHHHhCCCEEEEE--CCCCchhhh
Confidence 23345666777888877774 44555 444
No 403
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00019 Score=60.43 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=71.9
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccc------c---CCCC--C------------cceeeEEEEEE------E-CCeEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFC------L---ESKS--T------------IGVEFATRTLQ------V-EGKTV 61 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~------~---~~~~--t------------~~~~~~~~~~~------~-~~~~~ 61 (217)
.-.|+|+|+.|+||||++.+|...-.. . ..+. . .+..+....-. + .-..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 457899999999999999888642110 0 0000 0 00000000000 0 01235
Q ss_pred EEEEEecCChhhhccc-------hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 62 KAQIWDTAGQERYRAI-------TSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
.+.|+||+|....... .... . ....++|++.+. +...+...+..+.. ..+.-+|+||.|...
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~--- 498 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG--- 498 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence 6789999995322111 1111 1 224566667653 23344444444433 235678999999643
Q ss_pred cCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 042687 135 VAAEDAQILAEKEGLSFLETSALEALNV 162 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~vSa~~~~gv 162 (217)
..-.+..+....+.++..++ +|..+
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 23456666777788877774 34444
No 404
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=2.9e-05 Score=62.28 Aligned_cols=154 Identities=23% Similarity=0.185 Sum_probs=90.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCc-----------------------c--------ccCCCCCcceeeEEEEEEECC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNE-----------------------F--------CLESKSTIGVEFATRTLQVEG 58 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~-----------------------~--------~~~~~~t~~~~~~~~~~~~~~ 58 (217)
..-++++++|+..+||||+-..+.... + .+......+.......+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 345899999999999999987653210 0 001111111222222233333
Q ss_pred eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChh---hHHHH--HHHHHHHHhhcCCCCeEEEEEeCCCCcccc
Q 042687 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFDNV--TRWLRELRDHADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~--~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 133 (217)
.++++.|+|||..|-..+-.-..+||+.++|+++...+ .|+.- .+-..++..... -..+++++||.|-+.-+
T Consensus 157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVN 233 (501)
T ss_pred --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccC
Confidence 46789999999988877777788999999999884322 12211 111112222222 45578889999964311
Q ss_pred --ccCH----HHHHHHHHHcC------CeEEEecCCCCCCHHHHH
Q 042687 134 --AVAA----EDAQILAEKEG------LSFLETSALEALNVEKAF 166 (217)
Q Consensus 134 --~~~~----~~~~~~~~~~~------~~~~~vSa~~~~gv~~~~ 166 (217)
.... +.+..+.+..| ..++++|..+|.++.+-.
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 1111 22334444333 458999999999887654
No 405
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.87 E-value=9.3e-05 Score=51.82 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=61.7
Q ss_pred EEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCC
Q 042687 16 VLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 95 (217)
Q Consensus 16 ~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (217)
+.-|..|+|||++.-.+...-. .....+.-.+... ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 4567889999999876643211 1110110000000 000111567899999753 223356788999999999886
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 96 KRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 96 ~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
..++..+...+..+..... ..++.+|+|+.+..
T Consensus 78 -~~s~~~~~~~l~~l~~~~~-~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 -PTSITDAYALIKKLAKQLR-VLNFRVVVNRAESP 110 (139)
T ss_pred -hhHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCCH
Confidence 4455555455555544332 45678999999754
No 406
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.86 E-value=4.4e-05 Score=55.82 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=41.0
Q ss_pred EEEEEecCChhhhccc--hh---hhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCeEEEEEeCCCCcccccc
Q 042687 62 KAQIWDTAGQERYRAI--TS---AYYRGAVGALLVYDITKRQTFDNVTR-WLRELRDHADSNIVIMMAGNKSDLNHLRAV 135 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~~--~~---~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (217)
...++.+.|...-..+ .. ...-..+.+|.|+|+.+-.....+.. +..++.. ++ ++++||+|+.+.. .
T Consensus 86 d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-AD-----vIvlnK~D~~~~~-~ 158 (178)
T PF02492_consen 86 DRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-AD-----VIVLNKIDLVSDE-Q 158 (178)
T ss_dssp SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT--S-----EEEEE-GGGHHHH--
T ss_pred CEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh-cC-----EEEEeccccCChh-h
Confidence 4567788884322222 01 11235688999999976433344433 3333322 22 7888999987644 1
Q ss_pred CHHHHHHHHHHcC
Q 042687 136 AAEDAQILAEKEG 148 (217)
Q Consensus 136 ~~~~~~~~~~~~~ 148 (217)
..+...+..+..+
T Consensus 159 ~i~~~~~~ir~ln 171 (178)
T PF02492_consen 159 KIERVREMIRELN 171 (178)
T ss_dssp -HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHC
Confidence 2244555555443
No 407
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.86 E-value=0.00023 Score=56.79 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-.+|.|.-|||||||+|++...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 45688999999999999999754
No 408
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.84 E-value=0.00064 Score=56.48 Aligned_cols=85 Identities=18% Similarity=0.063 Sum_probs=47.2
Q ss_pred EEEEEecCChhhhccc----hh--hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc
Q 042687 62 KAQIWDTAGQERYRAI----TS--AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 135 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (217)
.+.|+||+|....... .. ..+..+|.+++|+|++... ........+.... ...-+|+||.|... +
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a-~-- 247 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA-K-- 247 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC-c--
Confidence 6789999995432211 11 1234678899999987642 2222223333221 12357889999643 1
Q ss_pred CHHHHHHHHHHcCCeEEEecC
Q 042687 136 AAEDAQILAEKEGLSFLETSA 156 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~vSa 156 (217)
--.+-.+....+.|+..++.
T Consensus 248 -~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 248 -GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred -ccHHHHHHHHHCcCEEEEec
Confidence 12344555666777666643
No 409
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.84 E-value=0.00024 Score=56.64 Aligned_cols=87 Identities=17% Similarity=0.058 Sum_probs=48.7
Q ss_pred EEEEecCChhhhccchhhh--------hcCCcEEEEEEeCCChhhHHH-H-HHHHHHHHhhcCCCCeEEEEEeCCCCccc
Q 042687 63 AQIWDTAGQERYRAITSAY--------YRGAVGALLVYDITKRQTFDN-V-TRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (217)
Q Consensus 63 ~~i~D~~G~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~s~~~-~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 132 (217)
..++.+.|-..-......+ .-..|++|-|+|+.+-..... . .....++... =+|++||.|+.+.
T Consensus 87 ~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv~~ 160 (323)
T COG0523 87 RLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLVDA 160 (323)
T ss_pred EEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCCCH
Confidence 4577787733221221111 124588999999876433222 2 2222333222 2788999999875
Q ss_pred cccCHHHHHHHHHHcC--CeEEEecCC
Q 042687 133 RAVAAEDAQILAEKEG--LSFLETSAL 157 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~--~~~~~vSa~ 157 (217)
.. .+..+...+..+ ++++.++..
T Consensus 161 ~~--l~~l~~~l~~lnp~A~i~~~~~~ 185 (323)
T COG0523 161 EE--LEALEARLRKLNPRARIIETSYG 185 (323)
T ss_pred HH--HHHHHHHHHHhCCCCeEEEcccc
Confidence 53 344555555554 678887763
No 410
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.84 E-value=3.4e-05 Score=59.97 Aligned_cols=60 Identities=17% Similarity=0.351 Sum_probs=39.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccc----cCCCCCcceeeEEEE-EEECCeEEEEEEEecCC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFC----LESKSTIGVEFATRT-LQVEGKTVKAQIWDTAG 70 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~----~~~~~t~~~~~~~~~-~~~~~~~~~~~i~D~~G 70 (217)
+..+++.|+|.||+|||||+|++...... ....+-.+++..... +.+.+.+ .+.++||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCC
Confidence 45689999999999999999988653221 112222344444433 4454444 367999999
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=97.83 E-value=0.00035 Score=57.95 Aligned_cols=86 Identities=17% Similarity=0.088 Sum_probs=47.2
Q ss_pred EEEEEEecCChhhhc----cchhhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 61 VKAQIWDTAGQERYR----AITSAY--YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
+.+.|+||+|..... ...... .-..+.+++|.|+... +........+.+.. + ..-+|+||.|-.. +
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~-i~giIlTKlD~~~-r- 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--G-LTGVILTKLDGDA-R- 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc-c-
Confidence 457899999943211 111111 1256778999998653 22323333343321 1 2357779999532 1
Q ss_pred cCHHHHHHHHHHcCCeEEEecC
Q 042687 135 VAAEDAQILAEKEGLSFLETSA 156 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~vSa 156 (217)
.-.+.......++|+..++.
T Consensus 256 --gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 --GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 12355666677888766654
No 412
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00023 Score=57.68 Aligned_cols=134 Identities=19% Similarity=0.181 Sum_probs=69.9
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCcc---------ccCCCCC------------cceeeEEEEEEE----------C-Ce
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEF---------CLESKST------------IGVEFATRTLQV----------E-GK 59 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~t------------~~~~~~~~~~~~----------~-~~ 59 (217)
.-.|+++|+.||||||++.++..... ..+.... .+..+... ... . ..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~-~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA-TSPAELEEAVQYMTYVN 284 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec-CCHHHHHHHHHHHHhcC
Confidence 45789999999999999998864210 0000000 01111100 000 0 01
Q ss_pred EEEEEEEecCChhhhcc----chhhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc
Q 042687 60 TVKAQIWDTAGQERYRA----ITSAYYR--GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 60 ~~~~~i~D~~G~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 133 (217)
.+.+.++||+|...... ....+.. ..+.+++|.++.. ....+...+..+.. -.+--+|+||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~----l~i~glI~TKLDET~-- 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE----IPIDGFIITKMDETT-- 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc----CCCCEEEEEcccCCC--
Confidence 24678999999642221 1222222 3466677776632 23333333333322 123357789999643
Q ss_pred ccCHHHHHHHHHHcCCeEEEecC
Q 042687 134 AVAAEDAQILAEKEGLSFLETSA 156 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~vSa 156 (217)
..-.+-.++...+.|+..++.
T Consensus 357 --~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEec
Confidence 233456667778888777753
No 413
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.82 E-value=9.8e-05 Score=52.28 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=34.8
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 128 (217)
+.+.++||+|.... ...++..+|-+|++..+.-.+.+.- .++ ..+.. --++++||.|
T Consensus 92 ~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~-~k~-~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQA-IKA-GIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHH-hhh-hHhhh------cCEEEEeCCC
Confidence 46789999886422 2347889999999988763333222 222 12211 1378889987
No 414
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.80 E-value=0.00012 Score=42.34 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=30.5
Q ss_pred cCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 042687 83 RGAVGALLVYDITKR--QTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128 (217)
Q Consensus 83 ~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 128 (217)
.-.++++|++|++.. .+.+.-..++..++.... ++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 456899999999864 356666677788887776 899999999998
No 415
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.80 E-value=0.00018 Score=47.61 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=50.4
Q ss_pred EEEEc-CCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 15 IVLIG-DSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 15 i~i~G-~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
|++.| ..|+||||+...+...-. ... .....++.+.. +.+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~-------~~vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRG-------KRVLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCC-------CcEEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56677 568999999877644221 111 11222222222 567799999864322 3366778999999998
Q ss_pred CCChhhHHHHHHHHH
Q 042687 94 ITKRQTFDNVTRWLR 108 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~ 108 (217)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 556666666655
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.77 E-value=0.00015 Score=60.05 Aligned_cols=86 Identities=19% Similarity=0.098 Sum_probs=48.8
Q ss_pred EEEEEEecCChhhhcc----chhhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 61 VKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
+.+.|+||+|...... ....+ .-..|.+++|+|+...+ ....+...+.... ...-+|+||.|-.. +
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~-~- 254 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDA-R- 254 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcc-c-
Confidence 4578999999432211 11111 23568889999987532 3333334443322 12457799999532 1
Q ss_pred cCHHHHHHHHHHcCCeEEEecC
Q 042687 135 VAAEDAQILAEKEGLSFLETSA 156 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~vSa 156 (217)
.-.+..++...++|+..+..
T Consensus 255 --~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 --GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 12366667777888776654
No 417
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00055 Score=60.24 Aligned_cols=144 Identities=17% Similarity=0.129 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCC--C-CCcceeeEE---------------EEEE-E-C----------CeEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLES--K-STIGVEFAT---------------RTLQ-V-E----------GKTVK 62 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~--~-~t~~~~~~~---------------~~~~-~-~----------~~~~~ 62 (217)
--|+|+|+.||||||++.+|......... . .-.+.+.+. ..+. . + -....
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 36899999999999999988753211000 0 000000000 0000 0 0 01235
Q ss_pred EEEEecCChhhh----ccchhhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC
Q 042687 63 AQIWDTAGQERY----RAITSAY--YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA 136 (217)
Q Consensus 63 ~~i~D~~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (217)
+.|+||+|.... ....... ....+-.++|.|++.. .+.+......+...... -+--+|+||.|-.. .
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~-~i~glIlTKLDEt~----~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE-DVDGCIITKLDEAT----H 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC-CCCEEEEeccCCCC----C
Confidence 789999993211 1111111 2234567889898742 23333334444332110 13357889999643 2
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCH-HHH
Q 042687 137 AEDAQILAEKEGLSFLETSALEALNV-EKA 165 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~vSa~~~~gv-~~~ 165 (217)
.-.+-.+....++|+..++ +|.+| +++
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~VPdDL 366 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKVPEHL 366 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCChhhc
Confidence 2345566777788877774 44555 444
No 418
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00092 Score=54.72 Aligned_cols=90 Identities=11% Similarity=-0.006 Sum_probs=50.1
Q ss_pred EEEEEEecCChhhhcc----chhhhhcC--Cc-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc
Q 042687 61 VKAQIWDTAGQERYRA----ITSAYYRG--AV-GALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 133 (217)
+.+.++||+|...... ....++.. .+ -.++|.|++.. ...+...+..+... -+--+++||.|-..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~-- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETT-- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCC--
Confidence 4678999999542211 11222222 13 57889998764 23343444444322 13357889999543
Q ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 042687 134 AVAAEDAQILAEKEGLSFLETSALEALNV 162 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 162 (217)
..-.+-.++...+.|+..++ +|.++
T Consensus 327 --~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 --CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred --cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22345566677788876664 34444
No 419
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.72 E-value=0.00079 Score=56.50 Aligned_cols=92 Identities=20% Similarity=0.137 Sum_probs=48.8
Q ss_pred EEEEEecCChhhhcc---chhhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc
Q 042687 62 KAQIWDTAGQERYRA---ITSAYYRG---AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 135 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~---~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (217)
.+.++||+|...... .....+.. ..-.++|+|++... ..+......+.. ..+--+|+||.|-..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~---- 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA---- 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc----
Confidence 467999999332111 11111111 12267888886422 233333333322 223457789999543
Q ss_pred CHHHHHHHHHHcCCeEEEecCCCCCCH-HHH
Q 042687 136 AAEDAQILAEKEGLSFLETSALEALNV-EKA 165 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~vSa~~~~gv-~~~ 165 (217)
..-.+-.+....++|+..++ +|.+| +++
T Consensus 406 ~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYVS--NGQRVPEDL 434 (484)
T ss_pred cchHHHHHHHHHCCCeEEEe--cCCCChhhh
Confidence 23356667777888877774 45556 544
No 420
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.69 E-value=7.4e-05 Score=55.79 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=73.2
Q ss_pred eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhcC-CCCeEEEEEeCC
Q 042687 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ----------TFDNVTRWLRELRDHAD-SNIVIMMAGNKS 127 (217)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~ 127 (217)
..+.+.++|.+|+...+..|..++.++-.+++++.++..+ ..++-..++..+...-. .+.++|+++||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 3456779999998888888888888887777776654321 22222223333322211 367899999999
Q ss_pred CCcccc----------------ccCHHHHHHHHH----HcC------CeEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 042687 128 DLNHLR----------------AVAAEDAQILAE----KEG------LSFLETSALEALNVEKAFQTILLDIYHII 177 (217)
Q Consensus 128 Dl~~~~----------------~~~~~~~~~~~~----~~~------~~~~~vSa~~~~gv~~~~~~l~~~~~~~~ 177 (217)
|+.++. ......+++|.. ..+ +.-..+-|.+..|+.-+|..+.+.++...
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 984321 112233344432 222 12234567778899999999988887654
No 421
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.67 E-value=3.9e-05 Score=61.44 Aligned_cols=58 Identities=22% Similarity=0.450 Sum_probs=41.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 71 (217)
...+++.|+|.+++||||+||+|......... .+.|.+..-..+..+. .+.|+|.||-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence 45699999999999999999999987764322 2233444444444443 5669999993
No 422
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.67 E-value=0.00045 Score=47.98 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
..++|.|++|+|||+|++.+....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999987754
No 423
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.65 E-value=0.00092 Score=52.04 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccc---------cCCC------------CCcceeeEEEEEE----------E-CCeE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFC---------LESK------------STIGVEFATRTLQ----------V-EGKT 60 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~---------~~~~------------~t~~~~~~~~~~~----------~-~~~~ 60 (217)
-+++++|++|+||||++..+...-.. .+.. ...+..+... .. . ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 58999999999999999877543110 0000 0011111100 00 0 0113
Q ss_pred EEEEEEecCChhhhc----cchhhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 61 VKAQIWDTAGQERYR----AITSAYY--RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
+.+.++||+|..... ..+..++ ...+-.++|.|++.. .+.+..++..+... .+--+++||.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~----~~~~~I~TKlDet~--- 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA--- 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC----CCCEEEEEeecCCC---
Confidence 567899999954211 1122222 244668899998642 23333444444432 22357789999654
Q ss_pred cCHHHHHHHHHHcCCeEEEec
Q 042687 135 VAAEDAQILAEKEGLSFLETS 155 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~vS 155 (217)
..-.+-.++...+.|+..++
T Consensus 226 -~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 -SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 12345566667788877664
No 424
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.64 E-value=0.00056 Score=44.10 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=43.5
Q ss_pred EEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc-hhhhhcCCcEEEEEEe
Q 042687 15 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYD 93 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~ii~v~d 93 (217)
+++.|..|+||||+...+...-... + +... .++ .+.++|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g--~~v~--~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------G--KRVL--LID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------C--CeEE--EEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999998876533210 1 1111 122 5669999986432221 1455678899999988
Q ss_pred CCC
Q 042687 94 ITK 96 (217)
Q Consensus 94 ~~~ 96 (217)
...
T Consensus 68 ~~~ 70 (99)
T cd01983 68 PEA 70 (99)
T ss_pred Cch
Confidence 764
No 425
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=6.6e-05 Score=61.99 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=75.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccC------CCCC--------cceeeEEEEEEE----------------CCeEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLE------SKST--------IGVEFATRTLQV----------------EGKTV 61 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~------~~~t--------~~~~~~~~~~~~----------------~~~~~ 61 (217)
.-++-++-+...|||||...|+....... ...+ .+.+.....+.. ++..+
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 35788899999999999999865322111 0011 111121111111 23355
Q ss_pred EEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 042687 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 129 (217)
-++++|.|||-.|.+.....++-.|+++.|+|..+.-..+.-..+.+.+.+ .+.-+++.||.|.
T Consensus 99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhH
Confidence 688999999999999999999999999999999887655554444444444 3334567799995
No 426
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00039 Score=57.09 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc-cc---------cCCC------------CCcceeeEEEE-E-----EECCeEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE-FC---------LESK------------STIGVEFATRT-L-----QVEGKTVKAQ 64 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~-~~---------~~~~------------~t~~~~~~~~~-~-----~~~~~~~~~~ 64 (217)
.-|+++|++||||||++.+|.... .. .+.. ...+....... . ......+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 468899999999999999886421 00 0000 00011111100 0 0011234567
Q ss_pred EEecCChhhh----ccchhhhhc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc
Q 042687 65 IWDTAGQERY----RAITSAYYR-----GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV 135 (217)
Q Consensus 65 i~D~~G~~~~----~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~ 135 (217)
++||+|.... ...+..++. ...-.++|.|++... ..+...+..+... -+--+|+||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~---- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEAD---- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCC----
Confidence 9999995321 111222222 233578888987543 2333333333222 22357889999543
Q ss_pred CHHHHHHHHHHcCCeEEEecC
Q 042687 136 AAEDAQILAEKEGLSFLETSA 156 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~vSa 156 (217)
..-.+..++...+.|+..++.
T Consensus 374 ~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred CccHHHHHHHHHCCCEEEEec
Confidence 123456666777888776653
No 427
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.61 E-value=0.0013 Score=54.72 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=48.4
Q ss_pred EEEEEEecCChhhhc----cchhhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc
Q 042687 61 VKAQIWDTAGQERYR----AITSAYYR---GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 133 (217)
+.+.++||+|..... .....++. .-.-+++|++++-. ...+...+..+... + +--+|+||.|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 467899999953221 11222333 23456777887542 23333333334322 2 2358889999643
Q ss_pred ccCHHHHHHHHHHcCCeEEEecC
Q 042687 134 AVAAEDAQILAEKEGLSFLETSA 156 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~vSa 156 (217)
..-.+..+....++|+..++.
T Consensus 372 --~~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLTN 392 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEeC
Confidence 223566777788888877753
No 428
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.54 E-value=9.7e-05 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
--++|.|++|+|||++++++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998754
No 429
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.51 E-value=8.4e-05 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 430
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.51 E-value=0.00078 Score=51.97 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHhHHhc
Q 042687 15 IVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~ 34 (217)
|+++|.+||||||+.+.|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999998864
No 431
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.47 E-value=0.0014 Score=47.85 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
=.++|+|+.|+|||||++.+.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 478999999999999999988754
No 432
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.46 E-value=0.0062 Score=43.70 Aligned_cols=139 Identities=10% Similarity=0.065 Sum_probs=91.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..-.|+++|..+.++..|..++..... ++. ..+.... . +- .|. +.. ..=...|.|+|
T Consensus 14 n~atiLLVg~e~~~~~~LA~a~l~~~~----------~~~-l~Vh~a~---s--LP-Lp~--e~~----~lRprIDlIVF 70 (176)
T PF11111_consen 14 NTATILLVGTEEALLQQLAEAMLEEDK----------EFK-LKVHLAK---S--LP-LPS--ENN----NLRPRIDLIVF 70 (176)
T ss_pred ceeEEEEecccHHHHHHHHHHHHhhcc----------cee-EEEEEec---c--CC-Ccc--ccc----CCCceeEEEEE
Confidence 457899999999999999999985221 111 1111100 0 00 111 111 11246799999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
++|.....|+..++.-+..+....-.++ +.++++-....+...+...++.+++..++.|++.+.-....+...+-+.|+
T Consensus 71 vinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL 149 (176)
T PF11111_consen 71 VINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLL 149 (176)
T ss_pred EEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHH
Confidence 9999999999999887777654443344 444555555555566778899999999999999998777766665555555
Q ss_pred HHH
Q 042687 171 LDI 173 (217)
Q Consensus 171 ~~~ 173 (217)
+.+
T Consensus 150 ~~l 152 (176)
T PF11111_consen 150 RML 152 (176)
T ss_pred HHH
Confidence 543
No 433
>PRK08118 topology modulation protein; Reviewed
Probab=97.46 E-value=0.00011 Score=53.11 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999998764
No 434
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00011 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.749 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.||+|+|++||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 435
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.43 E-value=0.0011 Score=44.11 Aligned_cols=100 Identities=17% Similarity=0.100 Sum_probs=57.2
Q ss_pred EcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCCh
Q 042687 18 IGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR 97 (217)
Q Consensus 18 ~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (217)
=+..|+||||+...|...-.......+.-.+. +.... ..+.++|+|+.... .....+..+|.++++.+.+ .
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~-----d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDL-----DLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-L 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC-----CCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-h
Confidence 35678999998876643221110111110000 00000 05679999885432 2345678899999998775 4
Q ss_pred hhHHHHHHHHHHHHhhcCC-CCeEEEEEeC
Q 042687 98 QTFDNVTRWLRELRDHADS-NIVIMMAGNK 126 (217)
Q Consensus 98 ~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK 126 (217)
.+...+..++..+.+.... ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 5667777777777665433 3456677775
No 436
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.42 E-value=0.0019 Score=47.07 Aligned_cols=86 Identities=28% Similarity=0.269 Sum_probs=60.1
Q ss_pred eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHH
Q 042687 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAE 138 (217)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 138 (217)
..+.+.++|+|+.... .....+..+|.++++...+ ..+...+..++..+... +.|+.+|+|++|.... ...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 3457889999975322 2345678899999999887 34566666666666554 5678899999996532 245
Q ss_pred HHHHHHHHcCCeEEE
Q 042687 139 DAQILAEKEGLSFLE 153 (217)
Q Consensus 139 ~~~~~~~~~~~~~~~ 153 (217)
+.+++....+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677778888887664
No 437
>PRK07261 topology modulation protein; Provisional
Probab=97.41 E-value=0.00014 Score=52.85 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
+|+|+|++|||||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 438
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.37 E-value=0.00074 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.+-++|+|+.||||||+++.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 46789999999999999998853
No 439
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.35 E-value=0.00022 Score=42.18 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
..+|.|+.|+|||||+.++..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988643
No 440
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.32 E-value=0.00018 Score=50.39 Aligned_cols=20 Identities=40% Similarity=0.768 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHhHHhc
Q 042687 15 IVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~ 34 (217)
|+++|++|||||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 441
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.30 E-value=0.0025 Score=48.68 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=54.3
Q ss_pred EEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhcC----CCCe
Q 042687 51 TRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ-------TFDNVTRWLRELRDHAD----SNIV 119 (217)
Q Consensus 51 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~i~~~~~----~~~p 119 (217)
...+.++. ++++.+|.+|+...+..|...+.++-++|||...++.. +-..+.+-+..++.... ..+.
T Consensus 194 et~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tis 271 (379)
T KOG0099|consen 194 ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTIS 271 (379)
T ss_pred eEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhh
Confidence 33344443 56889999999999999999999999999999886521 22233333343333321 3577
Q ss_pred EEEEEeCCCC
Q 042687 120 IMMAGNKSDL 129 (217)
Q Consensus 120 ~ivv~nK~Dl 129 (217)
+|+++||.|+
T Consensus 272 vIlFLNKqDl 281 (379)
T KOG0099|consen 272 VILFLNKQDL 281 (379)
T ss_pred eeEEecHHHH
Confidence 8999999997
No 442
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.26 E-value=0.0005 Score=51.49 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=23.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.+....-|+|+|++|||||||++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4445567889999999999999999754
No 443
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.26 E-value=0.00029 Score=42.91 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
|++.|++|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 444
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.25 E-value=0.00016 Score=51.97 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 445
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.25 E-value=0.0014 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
--|++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998753
No 446
>PRK04195 replication factor C large subunit; Provisional
Probab=97.25 E-value=0.0067 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-.++|.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999764
No 447
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.24 E-value=0.0081 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.+|.|.-|+|||||++++...
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4688899999999999999754
No 448
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.23 E-value=0.00012 Score=58.73 Aligned_cols=84 Identities=17% Similarity=0.238 Sum_probs=49.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc--cchhhhhcCCc
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR--AITSAYYRGAV 86 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~~~~~~~~~~d 86 (217)
...-+-|.++|.+|+||||+||.|...++..... -.+.+.....+.. ...+-++|+||...-. .-....++
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivLk--- 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVLK--- 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHhh---
Confidence 4456899999999999999999998877653322 1122222211111 1245699999953222 21222233
Q ss_pred EEEEEEeCCChhh
Q 042687 87 GALLVYDITKRQT 99 (217)
Q Consensus 87 ~ii~v~d~~~~~s 99 (217)
+++-|=.+.+++.
T Consensus 377 GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 377 GVVRVENVKNPED 389 (572)
T ss_pred ceeeeeecCCHHH
Confidence 4566667777653
No 449
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.23 E-value=0.00026 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-|+|+|++|||||||+|-+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999987553
No 450
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.00028 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
=|+|+|++|||||||++.+.+-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999998876443
No 451
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.22 E-value=0.00033 Score=52.53 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=17.0
Q ss_pred eEEEEEcCCCCCHHHHHhHH
Q 042687 13 FKIVLIGDSGVGKSNILSRF 32 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l 32 (217)
+-.+|+|+|||||||.++-+
T Consensus 3 fgqvVIGPPgSGKsTYc~g~ 22 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGM 22 (290)
T ss_pred cceEEEcCCCCCccchhhhH
Confidence 45689999999999998754
No 452
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.21 E-value=0.00028 Score=52.36 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCcc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
=.|+|+|++|||||||++.+-+.+.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC
Confidence 3689999999999999998866443
No 453
>PRK01889 GTPase RsgA; Reviewed
Probab=97.18 E-value=0.00053 Score=55.71 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-.++|+|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998754
No 454
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.17 E-value=0.00034 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999887754
No 455
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.17 E-value=0.0098 Score=43.10 Aligned_cols=84 Identities=15% Similarity=0.055 Sum_probs=51.7
Q ss_pred EEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHH
Q 042687 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQ 141 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 141 (217)
.+.++|+|+.... .....+..+|.+|++.+... .++..+..++..+.... .....+++|+.+..... ......
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence 5779999875432 23455788999999988763 45555555555555431 23467899999864321 122234
Q ss_pred HHHHHcCCeEE
Q 042687 142 ILAEKEGLSFL 152 (217)
Q Consensus 142 ~~~~~~~~~~~ 152 (217)
.+....+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555676654
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.17 E-value=0.0018 Score=48.15 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-|+|+|++||||||+++.+.+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999887643
No 457
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.15 E-value=0.00037 Score=48.81 Aligned_cols=23 Identities=13% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.|+|+|+.|||||||+..|++.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997643
No 458
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.14 E-value=0.0081 Score=47.29 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHh
Q 042687 13 FKIVLIGDSGVGKSNILSRFT 33 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~ 33 (217)
-.|+|.|++||||||+++.|-
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 369999999999999999984
No 459
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.14 E-value=0.004 Score=48.85 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=57.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh-----------------
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----------------- 72 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------------- 72 (217)
.....++|+|++|.|||+++++|...... ..... . ..+.+..+.+|...
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPP-QSDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCC-CCCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 34468999999999999999999875432 11111 1 11233344444411
Q ss_pred -------hhccchhhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhc-CCCCeEEEEEeCC
Q 042687 73 -------RYRAITSAYYRGAVGALLVYDITKR---QTFDNVTRWLRELRDHA-DSNIVIMMAGNKS 127 (217)
Q Consensus 73 -------~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~ 127 (217)
.........++...+=++++|--+- -+...-...++.++... ...+|++.+++.-
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 1122223456677777888885321 11222233444444433 2479999998753
No 460
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.14 E-value=0.00041 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.=|+|+|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 448999999999999999998753
No 461
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.11 E-value=0.00046 Score=48.19 Aligned_cols=21 Identities=57% Similarity=0.854 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 462
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.10 E-value=0.0014 Score=44.59 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
--|++-|+-|+|||||++.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999987643
No 463
>PRK06217 hypothetical protein; Validated
Probab=97.09 E-value=0.00047 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.+|+|+|.+|||||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 464
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.07 E-value=0.00062 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
+...-|+|+|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34577999999999999999999763
No 465
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.06 E-value=0.00058 Score=46.97 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCcc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
-.++|+|++|+||||++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4789999999999999999987554
No 466
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.06 E-value=0.00048 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 467
>PRK10646 ADP-binding protein; Provisional
Probab=97.06 E-value=0.0047 Score=43.75 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-|++-|.-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999997643
No 468
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.05 E-value=0.00056 Score=50.32 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.|+|+|++|||||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999664
No 469
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.05 E-value=0.00053 Score=47.06 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998764
No 470
>PRK03839 putative kinase; Provisional
Probab=97.04 E-value=0.00054 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
+|+|+|++||||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998654
No 471
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.0025 Score=51.37 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHh
Q 042687 13 FKIVLIGDSGVGKSNILSRFT 33 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~ 33 (217)
--|.++|-.|+||||.+-+|.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA 122 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLA 122 (483)
T ss_pred cEEEEEeccCCCcceeHHHHH
Confidence 358899999999999998763
No 472
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.00037 Score=50.50 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
..-++|.||+|||||||+++|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3568999999999999999998765
No 473
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0096 Score=49.33 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=53.4
Q ss_pred EEEEEEEecCChhh-hccchh-----hhhcCCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccc
Q 042687 60 TVKAQIWDTAGQER-YRAITS-----AYYRGAVGALLVYDIT-KRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (217)
Q Consensus 60 ~~~~~i~D~~G~~~-~~~~~~-----~~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 132 (217)
.+.+.++||+|... ...++. .-....|.+++|-.+- -.++.+.+.++-..+..+......--++++|+|-.+.
T Consensus 466 gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVDD 545 (587)
T ss_pred CCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchhh
Confidence 34678999999431 111111 1245779999997653 3457777777666666664333344578899997542
Q ss_pred cccCHHHHHHHHHHcCCeEEEe
Q 042687 133 RAVAAEDAQILAEKEGLSFLET 154 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v 154 (217)
.. -.+..+.=.-+.|++++
T Consensus 546 ~v---g~~~~m~y~~~~pi~fv 564 (587)
T KOG0781|consen 546 KV---GAAVSMVYITGKPILFV 564 (587)
T ss_pred HH---HHHhhheeecCCceEEE
Confidence 21 11222333346677766
No 474
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.01 E-value=0.00059 Score=51.96 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
..++++|+|++|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4589999999999999999988754
No 475
>PRK14530 adenylate kinase; Provisional
Probab=97.01 E-value=0.00061 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.+|+|+|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999998854
No 476
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.99 E-value=0.00062 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.|+|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998664
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.98 E-value=0.00069 Score=44.89 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHh
Q 042687 13 FKIVLIGDSGVGKSNILSRFT 33 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~ 33 (217)
-.++|+|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999875
No 478
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.97 E-value=0.00068 Score=49.48 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 479
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.94 E-value=0.0008 Score=48.75 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
=.++|+|++|+|||||+|-+.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHh
Confidence 4789999999999999997765
No 480
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.93 E-value=0.00074 Score=49.52 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|+|++||||||+++++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 481
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.92 E-value=0.00075 Score=51.86 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-++|+|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 482
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.92 E-value=0.015 Score=40.81 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999998754
No 483
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.92 E-value=0.00085 Score=48.90 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHh
Q 042687 13 FKIVLIGDSGVGKSNILSRFT 33 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~ 33 (217)
-.++|+|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999875
No 484
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.92 E-value=0.00093 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
....|+|.|++|||||||.+.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3489999999999999999998764
No 485
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.92 E-value=0.00076 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
|+|.|++|||||||.+.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 486
>PRK14531 adenylate kinase; Provisional
Probab=96.91 E-value=0.00085 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.+|+++|++||||||+..+|...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988653
No 487
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.00094 Score=53.38 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHhHHhcCcc
Q 042687 15 IVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
++++||+|||||||++.+.+-..
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999887543
No 488
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.91 E-value=0.0047 Score=43.26 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCcc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
--|++-|+-|+|||||.+.+...--
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHHcC
Confidence 4588999999999999999876443
No 489
>PRK08727 hypothetical protein; Validated
Probab=96.90 E-value=0.015 Score=44.38 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
+++.|++|+|||.|+..+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998654
No 490
>PRK13949 shikimate kinase; Provisional
Probab=96.90 E-value=0.00092 Score=48.42 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
+|+|+|++|||||||...|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998765
No 491
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.88 E-value=0.00096 Score=49.09 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.-.++|+|++|||||||++.+.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3579999999999999999988643
No 492
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.88 E-value=0.0045 Score=49.96 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
..+|+|.|+.|||||||++.|.+.-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 4789999999999999999998654
No 493
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.88 E-value=0.00083 Score=48.64 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-+.|+|++|||||||++++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 46899999999999999999864
No 494
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.87 E-value=0.009 Score=45.11 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=62.7
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHH
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN--VTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAE 138 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 138 (217)
+.+.|+|+.|..... ....+..+|.+|+=.-.+..+.-+. ...|+..+.......+|.-|+.|+..-...+. ...
T Consensus 84 ~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~~-~~~ 160 (231)
T PF07015_consen 84 FDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLTR-AQR 160 (231)
T ss_pred CCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhhH-HHH
Confidence 567899998864322 3445678998888666653332222 23455555555566899999999986321111 111
Q ss_pred HHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 139 DAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 139 ~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
.+.++.. ++|+|.+...+..-+.++|.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 2233332 58999998888776666665
No 495
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.87 E-value=0.0013 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-|++.|.+||||||+.+.+...
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999988653
No 496
>PRK14532 adenylate kinase; Provisional
Probab=96.87 E-value=0.00095 Score=49.12 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
+|+++|++||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 497
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.83 E-value=0.0011 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 68999999999999999998754
No 498
>PRK08233 hypothetical protein; Provisional
Probab=96.82 E-value=0.0012 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
+-|+|.|.+|||||||.++|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 67889999999999999998753
No 499
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.82 E-value=0.011 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-+++.||+|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999988754
No 500
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0044 Score=44.96 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=23.6
Q ss_pred HHHHHHcCCeEE--EecCCCCCCHHHHHHHHHHHHHH
Q 042687 141 QILAEKEGLSFL--ETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 141 ~~~~~~~~~~~~--~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
+.++-+..+-+| ++||.+.+-+.+++..|.++..+
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE 201 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE 201 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 333333333344 68999999999999888776644
Done!