Query 042687
Match_columns 217
No_of_seqs 151 out of 1776
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 14:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 9.7E-45 3.3E-49 272.1 20.0 169 9-177 10-178 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 1.6E-37 5.3E-42 231.7 25.7 176 8-183 4-179 (206)
3 3cpj_B GTP-binding protein YPT 100.0 4.1E-38 1.4E-42 237.8 20.1 184 1-184 1-185 (223)
4 2bov_A RAla, RAS-related prote 100.0 1.4E-36 4.7E-41 226.3 22.9 167 9-176 11-178 (206)
5 3tkl_A RAS-related protein RAB 100.0 8.3E-36 2.9E-40 220.4 24.5 173 8-180 12-184 (196)
6 2ew1_A RAS-related protein RAB 100.0 4.4E-36 1.5E-40 223.2 22.9 173 6-178 20-192 (201)
7 2a5j_A RAS-related protein RAB 100.0 1.2E-35 4.1E-40 219.0 24.3 175 3-177 12-186 (191)
8 1vg8_A RAS-related protein RAB 100.0 5E-36 1.7E-40 223.5 22.3 171 9-180 5-180 (207)
9 2fu5_C RAS-related protein RAB 100.0 4.6E-36 1.6E-40 219.6 20.1 171 8-178 4-174 (183)
10 2hup_A RAS-related protein RAB 100.0 8.5E-36 2.9E-40 221.7 21.3 171 6-176 23-194 (201)
11 3tw8_B RAS-related protein RAB 100.0 3.4E-35 1.2E-39 214.2 24.1 172 8-180 5-176 (181)
12 1zbd_A Rabphilin-3A; G protein 100.0 3E-35 1E-39 218.7 24.0 173 8-180 4-176 (203)
13 2bme_A RAB4A, RAS-related prot 100.0 1.7E-35 5.9E-40 216.9 22.2 171 8-178 6-176 (186)
14 2oil_A CATX-8, RAS-related pro 100.0 3.5E-35 1.2E-39 216.7 23.4 174 5-178 18-191 (193)
15 2gf9_A RAS-related protein RAB 100.0 4.8E-35 1.6E-39 215.4 23.9 172 5-176 15-186 (189)
16 1z0f_A RAB14, member RAS oncog 100.0 4.1E-35 1.4E-39 213.4 22.9 169 7-175 10-178 (179)
17 3bc1_A RAS-related protein RAB 100.0 5.3E-35 1.8E-39 215.4 23.3 177 3-179 2-189 (195)
18 2o52_A RAS-related protein RAB 100.0 2.2E-35 7.6E-40 219.2 20.5 173 6-178 19-191 (200)
19 2efe_B Small GTP-binding prote 100.0 8.2E-35 2.8E-39 212.4 22.7 170 7-176 7-176 (181)
20 1z08_A RAS-related protein RAB 100.0 4.2E-35 1.4E-39 211.7 20.1 166 9-174 3-168 (170)
21 3dz8_A RAS-related protein RAB 100.0 1.1E-35 3.6E-40 219.3 16.1 171 8-178 19-189 (191)
22 2y8e_A RAB-protein 6, GH09086P 100.0 8.3E-35 2.8E-39 211.7 20.6 168 7-174 9-176 (179)
23 1r2q_A RAS-related protein RAB 100.0 2E-34 6.9E-39 207.9 22.4 165 9-173 3-167 (170)
24 2il1_A RAB12; G-protein, GDP, 100.0 7E-35 2.4E-39 215.1 20.2 170 6-175 20-190 (192)
25 1z0j_A RAB-22, RAS-related pro 100.0 4.9E-34 1.7E-38 206.0 24.0 165 9-173 3-167 (170)
26 2g6b_A RAS-related protein RAB 100.0 3.1E-34 1.1E-38 209.1 22.3 169 8-176 6-175 (180)
27 1g16_A RAS-related protein SEC 100.0 1.3E-34 4.3E-39 209.1 19.9 165 11-176 2-166 (170)
28 3kkq_A RAS-related protein M-R 100.0 3.5E-34 1.2E-38 209.5 22.3 167 8-175 14-182 (183)
29 2fg5_A RAB-22B, RAS-related pr 100.0 1.5E-34 5.1E-39 213.4 20.3 169 6-174 17-185 (192)
30 1ek0_A Protein (GTP-binding pr 100.0 3.5E-34 1.2E-38 206.7 21.8 163 11-173 2-167 (170)
31 1z2a_A RAS-related protein RAB 100.0 2.6E-34 8.9E-39 207.0 20.5 165 10-175 3-167 (168)
32 2fn4_A P23, RAS-related protei 100.0 3.9E-34 1.3E-38 208.5 21.6 169 7-176 4-173 (181)
33 2yc2_C IFT27, small RAB-relate 100.0 9.1E-35 3.1E-39 216.6 17.7 178 10-187 18-204 (208)
34 4dsu_A GTPase KRAS, isoform 2B 100.0 1.4E-33 4.9E-38 207.0 23.8 168 10-179 2-170 (189)
35 2f7s_A C25KG, RAS-related prot 100.0 3.5E-34 1.2E-38 215.2 20.4 174 5-178 18-202 (217)
36 3t5g_A GTP-binding protein RHE 100.0 4.7E-34 1.6E-38 208.5 20.5 166 10-176 4-170 (181)
37 2hxs_A RAB-26, RAS-related pro 100.0 2.3E-34 8E-39 209.4 18.6 167 9-175 3-173 (178)
38 3cbq_A GTP-binding protein REM 100.0 3.2E-34 1.1E-38 212.2 19.3 168 8-175 19-188 (195)
39 2p5s_A RAS and EF-hand domain 100.0 1.9E-34 6.5E-39 213.9 17.8 168 7-174 23-196 (199)
40 1z06_A RAS-related protein RAB 100.0 9.1E-34 3.1E-38 208.5 21.2 166 9-174 17-187 (189)
41 2nzj_A GTP-binding protein REM 100.0 1.5E-33 5E-38 204.5 21.9 167 10-177 2-171 (175)
42 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.2E-33 7.6E-38 204.0 22.6 166 9-175 4-174 (177)
43 3cph_A RAS-related protein SEC 100.0 2.1E-33 7E-38 210.2 22.6 169 8-177 16-184 (213)
44 3q85_A GTP-binding protein REM 100.0 9.9E-34 3.4E-38 204.4 19.8 164 12-175 2-167 (169)
45 3ihw_A Centg3; RAS, centaurin, 100.0 2.3E-33 8E-38 205.7 21.9 163 8-177 16-182 (184)
46 3c5c_A RAS-like protein 12; GD 100.0 9.3E-34 3.2E-38 208.3 19.8 164 9-174 18-185 (187)
47 2atx_A Small GTP binding prote 100.0 2.2E-33 7.5E-38 207.2 21.8 170 3-174 9-192 (194)
48 3q3j_B RHO-related GTP-binding 100.0 8.2E-34 2.8E-38 212.9 19.4 167 9-177 24-205 (214)
49 1x3s_A RAS-related protein RAB 100.0 4.6E-33 1.6E-37 205.3 22.9 167 8-175 11-178 (195)
50 2gf0_A GTP-binding protein DI- 100.0 1E-33 3.4E-38 209.7 19.2 163 10-174 6-170 (199)
51 2q3h_A RAS homolog gene family 100.0 2.6E-33 9E-38 207.9 21.4 170 8-179 16-199 (201)
52 2j0v_A RAC-like GTP-binding pr 100.0 5.9E-34 2E-38 213.2 17.5 168 10-179 7-184 (212)
53 1ky3_A GTP-binding protein YPT 100.0 1.4E-33 4.9E-38 205.7 19.1 168 9-176 5-179 (182)
54 3clv_A RAB5 protein, putative; 100.0 7.8E-33 2.7E-37 205.4 23.3 164 10-176 5-205 (208)
55 3reg_A RHO-like small GTPase; 100.0 6.3E-33 2.2E-37 204.9 22.6 165 9-175 20-188 (194)
56 3oes_A GTPase rhebl1; small GT 100.0 9E-34 3.1E-38 210.6 18.2 167 9-176 21-188 (201)
57 2iwr_A Centaurin gamma 1; ANK 100.0 8.3E-33 2.8E-37 201.3 22.4 163 11-180 6-174 (178)
58 2g3y_A GTP-binding protein GEM 100.0 4.4E-33 1.5E-37 208.2 21.3 167 8-175 33-203 (211)
59 1u8z_A RAS-related protein RAL 100.0 4.5E-33 1.5E-37 200.3 20.7 163 11-174 3-166 (168)
60 2atv_A RERG, RAS-like estrogen 100.0 4.1E-33 1.4E-37 206.3 20.3 166 9-176 25-192 (196)
61 2a9k_A RAS-related protein RAL 100.0 8.9E-33 3.1E-37 202.3 21.9 166 10-176 16-182 (187)
62 1kao_A RAP2A; GTP-binding prot 100.0 4.6E-33 1.6E-37 200.1 19.8 162 12-174 3-165 (167)
63 1c1y_A RAS-related protein RAP 100.0 3.7E-33 1.3E-37 200.8 19.2 161 12-173 3-165 (167)
64 3q72_A GTP-binding protein RAD 100.0 5.7E-33 1.9E-37 199.8 19.7 163 12-176 2-165 (166)
65 1gwn_A RHO-related GTP-binding 100.0 4.8E-33 1.6E-37 207.4 19.4 168 6-175 22-204 (205)
66 2j1l_A RHO-related GTP-binding 100.0 5.3E-33 1.8E-37 208.5 19.4 166 10-177 32-211 (214)
67 1m7b_A RND3/RHOE small GTP-bin 100.0 8.1E-33 2.8E-37 202.7 19.1 165 9-175 4-183 (184)
68 3l0i_B RAS-related protein RAB 100.0 1.3E-35 4.4E-40 220.3 3.8 168 8-175 29-196 (199)
69 3t1o_A Gliding protein MGLA; G 100.0 8.9E-34 3E-38 209.5 13.1 174 1-178 3-195 (198)
70 3gj0_A GTP-binding nuclear pro 100.0 3.1E-33 1.1E-37 210.7 15.9 172 1-175 4-175 (221)
71 2gco_A H9, RHO-related GTP-bin 100.0 4.5E-32 1.6E-36 201.5 21.7 164 10-175 23-200 (201)
72 3con_A GTPase NRAS; structural 100.0 1.1E-31 3.8E-36 197.4 22.7 165 11-177 20-185 (190)
73 1mh1_A RAC1; GTP-binding, GTPa 100.0 7E-32 2.4E-36 197.5 21.4 163 11-175 4-180 (186)
74 4djt_A GTP-binding nuclear pro 100.0 1.1E-32 3.8E-37 207.1 17.2 168 9-176 8-176 (218)
75 2erx_A GTP-binding protein DI- 100.0 3.4E-32 1.2E-36 196.5 18.5 162 11-173 2-165 (172)
76 2cjw_A GTP-binding protein GEM 100.0 1.1E-31 3.8E-36 198.1 21.4 167 10-177 4-174 (192)
77 2ce2_X GTPase HRAS; signaling 100.0 2E-31 6.9E-36 191.2 21.4 161 12-174 3-164 (166)
78 2fv8_A H6, RHO-related GTP-bin 100.0 1.5E-31 5.1E-36 199.5 21.4 164 10-175 23-200 (207)
79 3bwd_D RAC-like GTP-binding pr 100.0 1.2E-32 4E-37 201.1 13.3 162 11-174 7-180 (182)
80 2f9l_A RAB11B, member RAS onco 100.0 5.6E-31 1.9E-35 195.2 22.0 168 10-177 3-170 (199)
81 4bas_A ADP-ribosylation factor 100.0 1.1E-31 3.7E-36 198.7 18.0 166 6-177 11-191 (199)
82 4gzl_A RAS-related C3 botulinu 100.0 2.1E-31 7.1E-36 198.4 18.0 162 10-173 28-203 (204)
83 1f6b_A SAR1; gtpases, N-termin 100.0 8.9E-31 3E-35 194.1 16.4 155 11-172 24-196 (198)
84 1oix_A RAS-related protein RAB 100.0 1.3E-29 4.3E-34 186.9 22.4 166 8-173 25-190 (191)
85 2h57_A ADP-ribosylation factor 100.0 3.4E-30 1.2E-34 189.5 18.4 161 10-176 19-188 (190)
86 1r8s_A ADP-ribosylation factor 100.0 4.8E-31 1.6E-35 189.4 12.8 156 13-175 1-162 (164)
87 1upt_A ARL1, ADP-ribosylation 100.0 1.6E-30 5.6E-35 187.7 15.2 157 11-174 6-168 (171)
88 1zd9_A ADP-ribosylation factor 100.0 5.1E-31 1.7E-35 193.8 11.9 159 11-175 21-185 (188)
89 1m2o_B GTP-binding protein SAR 100.0 7.1E-30 2.4E-34 188.0 17.9 155 11-172 22-189 (190)
90 2zej_A Dardarin, leucine-rich 100.0 4.2E-31 1.4E-35 193.6 10.5 165 12-177 2-180 (184)
91 2h17_A ADP-ribosylation factor 100.0 5.7E-30 2E-34 187.0 16.0 158 8-172 17-180 (181)
92 1ksh_A ARF-like protein 2; sma 100.0 1.6E-29 5.4E-34 185.2 18.4 159 10-175 16-180 (186)
93 1zj6_A ADP-ribosylation factor 100.0 1.6E-29 5.4E-34 185.5 17.6 158 11-175 15-178 (187)
94 2b6h_A ADP-ribosylation factor 100.0 1.8E-30 6.1E-35 191.5 11.9 158 10-174 27-190 (192)
95 3llu_A RAS-related GTP-binding 100.0 4.2E-30 1.4E-34 190.1 13.2 165 6-173 14-195 (196)
96 1fzq_A ADP-ribosylation factor 100.0 4.8E-30 1.7E-34 187.5 13.3 159 10-175 14-178 (181)
97 2wkq_A NPH1-1, RAS-related C3 100.0 6.3E-29 2.1E-33 197.6 20.4 163 11-175 154-330 (332)
98 1moz_A ARL1, ADP-ribosylation 100.0 2.1E-29 7.3E-34 183.9 16.1 159 10-175 16-180 (183)
99 2x77_A ADP-ribosylation factor 100.0 4.1E-30 1.4E-34 188.9 11.2 159 10-175 20-184 (189)
100 3th5_A RAS-related C3 botulinu 99.9 5E-32 1.7E-36 201.6 0.0 162 10-173 28-203 (204)
101 2wji_A Ferrous iron transport 100.0 1.6E-28 5.6E-33 176.7 14.7 153 12-173 3-163 (165)
102 2qu8_A Putative nucleolar GTP- 100.0 1E-27 3.5E-32 181.3 19.0 170 10-182 27-212 (228)
103 3c5h_A Glucocorticoid receptor 100.0 1E-29 3.5E-34 195.4 7.4 164 8-173 15-253 (255)
104 2fh5_B SR-beta, signal recogni 100.0 1.1E-27 3.9E-32 179.2 16.2 160 10-172 5-213 (214)
105 3r7w_A Gtpase1, GTP-binding pr 100.0 1.8E-27 6.3E-32 187.4 16.7 161 11-175 2-181 (307)
106 1svi_A GTP-binding protein YSX 100.0 1.4E-27 4.8E-32 176.0 13.1 161 6-173 17-193 (195)
107 2lkc_A Translation initiation 100.0 2.8E-27 9.7E-32 171.8 14.4 157 10-175 6-171 (178)
108 2wjg_A FEOB, ferrous iron tran 99.9 3.3E-27 1.1E-31 173.1 14.0 156 11-175 6-169 (188)
109 2cxx_A Probable GTP-binding pr 99.9 1.1E-27 3.6E-32 175.9 11.3 157 13-178 2-187 (190)
110 3o47_A ADP-ribosylation factor 99.9 4.8E-28 1.6E-32 192.4 9.9 158 11-175 164-327 (329)
111 3r7w_B Gtpase2, GTP-binding pr 99.9 3.4E-28 1.2E-32 190.4 8.7 165 14-185 1-184 (331)
112 3lvq_E ARF-GAP with SH3 domain 99.9 2.6E-27 8.8E-32 198.2 12.6 159 10-175 320-484 (497)
113 3a1s_A Iron(II) transport prot 99.9 2.2E-26 7.4E-31 177.0 16.1 155 10-173 3-165 (258)
114 2dyk_A GTP-binding protein; GT 99.9 1.3E-26 4.4E-31 165.6 13.3 150 13-173 2-160 (161)
115 3iev_A GTP-binding protein ERA 99.9 4.4E-26 1.5E-30 179.6 16.4 163 7-173 5-180 (308)
116 2gj8_A MNME, tRNA modification 99.9 5.8E-27 2E-31 169.8 10.4 153 11-173 3-164 (172)
117 3pqc_A Probable GTP-binding pr 99.9 5.6E-26 1.9E-30 167.2 14.8 160 5-174 16-193 (195)
118 3iby_A Ferrous iron transport 99.9 2E-26 6.9E-31 176.9 10.9 151 13-172 2-164 (256)
119 3dpu_A RAB family protein; roc 99.9 5.4E-27 1.8E-31 197.7 8.2 163 9-175 38-208 (535)
120 3b1v_A Ferrous iron uptake tra 99.9 2.8E-26 9.6E-31 177.4 10.5 152 12-173 3-162 (272)
121 4dhe_A Probable GTP-binding pr 99.9 1.1E-25 3.9E-30 169.3 11.9 167 5-175 22-211 (223)
122 3k53_A Ferrous iron transport 99.9 3E-25 1E-29 171.9 13.8 154 12-173 3-164 (271)
123 3i8s_A Ferrous iron transport 99.9 1.1E-25 3.8E-30 174.5 10.4 153 12-173 3-167 (274)
124 1nrj_B SR-beta, signal recogni 99.9 3.7E-26 1.2E-30 171.5 5.5 145 8-161 8-170 (218)
125 3qq5_A Small GTP-binding prote 99.9 2.4E-25 8.1E-30 181.4 6.9 161 4-173 26-194 (423)
126 2e87_A Hypothetical protein PH 99.9 3.3E-23 1.1E-27 166.4 19.2 162 10-176 165-337 (357)
127 2hjg_A GTP-binding protein ENG 99.9 2.9E-24 9.9E-29 176.8 12.9 160 10-175 173-349 (436)
128 3gee_A MNME, tRNA modification 99.9 6.4E-24 2.2E-28 175.6 13.8 157 11-174 232-397 (476)
129 4dcu_A GTP-binding protein ENG 99.9 9.3E-24 3.2E-28 174.7 13.5 161 10-176 193-370 (456)
130 1wf3_A GTP-binding protein; GT 99.9 1.9E-23 6.6E-28 163.8 13.9 154 11-173 6-171 (301)
131 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-23 3.8E-28 167.4 10.9 156 13-173 159-328 (342)
132 3sjy_A Translation initiation 99.9 3.6E-22 1.2E-26 162.8 17.7 157 9-173 5-190 (403)
133 1mky_A Probable GTP-binding pr 99.9 2.3E-22 7.8E-27 165.6 15.9 150 13-174 2-165 (439)
134 1s0u_A EIF-2-gamma, translatio 99.9 6.3E-22 2.1E-26 161.6 17.8 158 10-173 6-196 (408)
135 1wb1_A Translation elongation 99.9 3.1E-22 1.1E-26 166.2 15.5 155 11-174 18-188 (482)
136 2ywe_A GTP-binding protein LEP 99.9 4.6E-22 1.6E-26 167.9 16.3 158 10-173 4-182 (600)
137 1xzp_A Probable tRNA modificat 99.9 1.1E-22 3.9E-27 168.3 12.3 153 12-175 243-405 (482)
138 3cb4_D GTP-binding protein LEP 99.9 2.8E-22 9.4E-27 169.6 14.8 157 11-173 3-180 (599)
139 1kk1_A EIF2gamma; initiation o 99.9 5.1E-22 1.7E-26 162.3 15.7 160 8-173 6-198 (410)
140 2qtf_A Protein HFLX, GTP-bindi 99.9 1.5E-21 5E-26 156.6 17.3 159 14-175 181-354 (364)
141 3lxx_A GTPase IMAP family memb 99.9 4.3E-21 1.5E-25 145.9 17.6 162 8-173 25-212 (239)
142 3j2k_7 ERF3, eukaryotic polype 99.9 1.7E-21 5.8E-26 160.2 16.3 154 9-167 14-217 (439)
143 2xtp_A GTPase IMAP family memb 99.9 8.2E-22 2.8E-26 151.7 13.6 163 9-175 19-208 (260)
144 3geh_A MNME, tRNA modification 99.9 1.5E-22 5E-27 166.9 9.5 152 11-174 223-383 (462)
145 1cip_A Protein (guanine nucleo 99.9 1.5E-21 5E-26 155.8 14.4 123 52-176 186-345 (353)
146 1ega_A Protein (GTP-binding pr 99.9 2E-21 6.7E-26 152.5 15.0 155 11-172 7-172 (301)
147 2hjg_A GTP-binding protein ENG 99.9 6.6E-23 2.2E-27 168.7 6.1 151 13-174 4-164 (436)
148 3t5d_A Septin-7; GTP-binding p 99.9 2.3E-22 7.9E-27 156.0 8.6 159 10-172 6-201 (274)
149 1mky_A Probable GTP-binding pr 99.9 3.5E-21 1.2E-25 158.5 15.1 160 10-175 178-355 (439)
150 3lxw_A GTPase IMAP family memb 99.9 2.7E-21 9.2E-26 147.7 13.0 164 10-175 19-208 (247)
151 2xtz_A Guanine nucleotide-bind 99.9 5.8E-21 2E-25 152.3 14.8 118 59-176 181-346 (354)
152 3izy_P Translation initiation 99.9 1.2E-23 4E-28 175.6 -1.1 157 12-173 4-166 (537)
153 3p26_A Elongation factor 1 alp 99.9 1.3E-21 4.5E-26 162.8 11.2 151 11-165 32-228 (483)
154 2ged_A SR-beta, signal recogni 99.9 8.5E-22 2.9E-26 144.8 8.9 116 9-133 45-172 (193)
155 3ohm_A Guanine nucleotide-bind 99.9 9.9E-21 3.4E-25 149.0 15.4 125 50-176 158-319 (327)
156 2qag_A Septin-2, protein NEDD5 99.9 2.2E-22 7.5E-27 161.6 5.9 160 11-175 36-233 (361)
157 1d2e_A Elongation factor TU (E 99.9 1.5E-21 5E-26 158.8 10.7 159 11-173 2-193 (397)
158 1zun_B Sulfate adenylate trans 99.9 3.1E-21 1.1E-25 158.6 12.7 155 8-168 20-217 (434)
159 3tr5_A RF-3, peptide chain rel 99.9 4.4E-21 1.5E-25 160.5 13.4 116 10-131 11-148 (528)
160 2elf_A Protein translation elo 99.9 2.4E-21 8.2E-26 155.8 10.6 147 14-176 23-181 (370)
161 2c78_A Elongation factor TU-A; 99.8 1.2E-21 4E-26 159.9 8.0 148 10-161 9-180 (405)
162 1g7s_A Translation initiation 99.8 1.6E-20 5.3E-25 159.0 14.2 156 12-174 5-217 (594)
163 1jny_A EF-1-alpha, elongation 99.8 2.4E-21 8.2E-26 159.3 7.5 154 11-167 5-205 (435)
164 1f60_A Elongation factor EEF1A 99.8 5.1E-21 1.7E-25 158.1 8.2 150 11-165 6-202 (458)
165 1pui_A ENGB, probable GTP-bind 99.8 3.2E-20 1.1E-24 138.2 11.6 156 9-173 23-197 (210)
166 4dcu_A GTP-binding protein ENG 99.8 3.4E-21 1.2E-25 159.4 6.7 152 12-173 23-183 (456)
167 3avx_A Elongation factor TS, e 99.8 1.6E-20 5.3E-25 166.3 10.9 159 9-171 293-482 (1289)
168 1r5b_A Eukaryotic peptide chai 99.8 2.9E-21 9.8E-26 160.0 5.6 155 10-166 41-243 (467)
169 4fid_A G protein alpha subunit 99.8 6.4E-20 2.2E-24 144.9 12.6 116 60-175 160-328 (340)
170 3izq_1 HBS1P, elongation facto 99.8 1E-20 3.5E-25 160.9 8.6 150 11-165 166-362 (611)
171 2aka_B Dynamin-1; fusion prote 99.8 3.7E-21 1.3E-25 150.8 5.2 160 8-171 22-249 (299)
172 1zo1_I IF2, translation initia 99.8 3.7E-22 1.3E-26 165.3 -0.7 155 11-171 3-163 (501)
173 2dy1_A Elongation factor G; tr 99.8 1.6E-19 5.4E-24 155.3 13.6 118 9-130 6-139 (665)
174 2j69_A Bacterial dynamin-like 99.8 5E-19 1.7E-23 152.8 15.5 165 11-178 68-328 (695)
175 1dar_A EF-G, elongation factor 99.8 2.4E-19 8.1E-24 154.7 12.5 123 1-131 1-143 (691)
176 3mca_A HBS1, elongation factor 99.8 1.5E-20 5.2E-25 159.4 4.1 150 9-163 174-371 (592)
177 3def_A T7I23.11 protein; chlor 99.8 2E-18 6.7E-23 133.0 13.9 119 11-132 35-166 (262)
178 1udx_A The GTP-binding protein 99.8 1.7E-18 5.6E-23 140.7 14.1 158 14-175 159-325 (416)
179 2h5e_A Peptide chain release f 99.8 1.5E-18 5.2E-23 145.3 13.2 116 10-131 11-148 (529)
180 1u0l_A Probable GTPase ENGC; p 99.8 1.8E-19 6.2E-24 141.3 7.1 134 27-171 32-169 (301)
181 3t34_A Dynamin-related protein 99.8 1.9E-19 6.5E-24 144.7 6.8 159 11-171 33-257 (360)
182 2qnr_A Septin-2, protein NEDD5 99.8 1.7E-19 5.8E-24 141.4 4.6 160 10-174 16-213 (301)
183 2rdo_7 EF-G, elongation factor 99.8 2.5E-17 8.5E-22 142.3 18.1 121 7-131 5-148 (704)
184 1azs_C GS-alpha; complex (lyas 99.8 1.4E-17 4.8E-22 134.3 15.1 126 52-179 210-389 (402)
185 1zcb_A G alpha I/13; GTP-bindi 99.8 6.5E-18 2.2E-22 135.2 12.8 124 51-176 193-354 (362)
186 1jwy_B Dynamin A GTPase domain 99.8 2.6E-18 9E-23 135.6 9.9 110 61-173 131-260 (315)
187 1h65_A Chloroplast outer envel 99.8 6.3E-18 2.2E-22 130.7 11.1 120 11-133 38-170 (270)
188 2qag_C Septin-7; cell cycle, c 99.7 2.4E-18 8.1E-23 139.9 8.3 158 10-171 29-223 (418)
189 1wxq_A GTP-binding protein; st 99.7 1.7E-18 5.7E-23 140.3 7.2 85 13-97 1-114 (397)
190 2xex_A Elongation factor G; GT 99.7 4.9E-17 1.7E-21 140.3 16.6 118 8-131 6-141 (693)
191 2wsm_A Hydrogenase expression/ 99.7 1.8E-17 6.3E-22 124.2 7.1 155 11-176 29-215 (221)
192 3vqt_A RF-3, peptide chain rel 99.7 2E-16 6.7E-21 133.1 13.3 116 10-131 29-166 (548)
193 2x2e_A Dynamin-1; nitration, h 99.7 1.8E-18 6E-23 138.7 0.1 158 11-171 30-254 (353)
194 1jal_A YCHF protein; nucleotid 99.7 9.1E-16 3.1E-20 122.2 15.0 146 13-158 3-240 (363)
195 3p32_A Probable GTPase RV1496/ 99.7 7.1E-17 2.4E-21 129.4 7.6 104 61-175 172-284 (355)
196 2hf9_A Probable hydrogenase ni 99.7 1.8E-18 6.1E-23 130.2 -2.5 153 11-174 37-223 (226)
197 1n0u_A EF-2, elongation factor 99.6 4.4E-16 1.5E-20 137.0 10.3 118 9-130 16-163 (842)
198 2qpt_A EH domain-containing pr 99.6 2.8E-16 9.7E-21 132.3 8.5 124 6-133 59-234 (550)
199 2www_A Methylmalonic aciduria 99.6 3E-16 1E-20 125.3 6.5 103 61-175 167-279 (349)
200 2dby_A GTP-binding protein; GD 99.6 2.2E-15 7.5E-20 120.7 10.5 155 13-167 2-254 (368)
201 4a9a_A Ribosome-interacting GT 99.6 4.1E-14 1.4E-18 113.3 14.4 155 10-167 70-240 (376)
202 3j25_A Tetracycline resistance 99.6 1.2E-15 4E-20 130.7 4.4 114 13-130 3-132 (638)
203 4fn5_A EF-G 1, elongation fact 99.6 9.9E-14 3.4E-18 120.3 16.3 119 8-130 9-150 (709)
204 2p67_A LAO/AO transport system 99.6 6.1E-16 2.1E-20 123.3 2.1 103 61-174 149-260 (341)
205 1yrb_A ATP(GTP)binding protein 99.5 6.8E-14 2.3E-18 107.3 11.1 113 61-174 109-256 (262)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 4.5E-14 1.5E-18 121.8 10.2 158 10-171 49-274 (772)
207 2yv5_A YJEQ protein; hydrolase 99.5 5.9E-14 2E-18 110.0 9.4 98 71-171 66-165 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 2E-13 6.8E-18 108.5 8.5 103 61-174 148-260 (337)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 1.8E-11 6.1E-16 98.7 16.2 87 10-96 18-127 (392)
210 3l82_B F-box only protein 4; T 99.4 3.4E-13 1.2E-17 98.4 5.1 103 69-173 110-221 (227)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 9.2E-13 3.1E-17 106.0 6.7 87 11-97 21-129 (396)
212 3l2o_B F-box only protein 4; s 99.2 1.2E-11 4.2E-16 94.5 7.1 104 68-173 194-306 (312)
213 3h2y_A GTPase family protein; 99.0 6.6E-10 2.3E-14 89.2 9.1 96 70-172 55-157 (368)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 3.8E-11 1.3E-15 96.5 1.4 139 13-161 163-317 (369)
215 2qag_B Septin-6, protein NEDD5 99.0 1.6E-09 5.5E-14 87.9 8.7 60 12-71 42-105 (427)
216 3h2y_A GTPase family protein; 99.0 4.2E-11 1.4E-15 96.2 -1.2 135 13-155 161-310 (368)
217 2j37_W Signal recognition part 98.9 6.5E-10 2.2E-14 92.3 5.5 151 11-172 100-310 (504)
218 3sop_A Neuronal-specific septi 98.9 3.1E-09 1.1E-13 81.8 7.3 137 12-153 2-178 (270)
219 3ec1_A YQEH GTPase; atnos1, at 98.9 2.8E-09 9.5E-14 85.7 7.0 96 70-172 57-159 (369)
220 1tq4_A IIGP1, interferon-induc 98.8 5.2E-08 1.8E-12 79.1 13.2 156 12-174 69-252 (413)
221 1puj_A YLQF, conserved hypothe 98.8 8.5E-09 2.9E-13 79.8 8.1 102 65-176 3-107 (282)
222 1puj_A YLQF, conserved hypothe 98.5 8E-08 2.7E-12 74.3 4.7 57 11-71 119-175 (282)
223 3cnl_A YLQF, putative uncharac 98.5 4.1E-08 1.4E-12 75.1 2.5 56 13-72 100-155 (262)
224 3dm5_A SRP54, signal recogniti 98.5 4.8E-07 1.7E-11 73.8 8.5 86 61-156 183-274 (443)
225 1t9h_A YLOQ, probable GTPase E 98.4 1E-07 3.6E-12 74.3 3.3 90 75-167 77-169 (307)
226 3cnl_A YLQF, putative uncharac 98.4 1.6E-07 5.5E-12 71.8 3.8 93 68-171 4-97 (262)
227 2v3c_C SRP54, signal recogniti 98.3 2.5E-06 8.7E-11 69.7 9.0 83 61-154 181-271 (432)
228 1f5n_A Interferon-induced guan 98.3 8.2E-07 2.8E-11 75.1 6.2 63 10-72 36-102 (592)
229 3kl4_A SRP54, signal recogniti 98.2 1.8E-06 6.3E-11 70.3 6.8 90 61-162 180-277 (433)
230 3szr_A Interferon-induced GTP- 98.2 3.8E-06 1.3E-10 71.7 7.8 25 13-37 46-70 (608)
231 2rcn_A Probable GTPase ENGC; Y 98.2 9.3E-06 3.2E-10 64.6 8.9 85 81-169 127-213 (358)
232 1j8m_F SRP54, signal recogniti 98.1 4.5E-06 1.5E-10 65.0 6.5 91 61-164 181-280 (297)
233 1bif_A 6-phosphofructo-2-kinas 98.0 3E-07 1E-11 76.2 -1.6 113 11-128 38-160 (469)
234 3e70_C DPA, signal recognition 97.9 1.4E-05 4.8E-10 63.0 5.7 90 63-164 214-309 (328)
235 3q5d_A Atlastin-1; G protein, 97.7 5.9E-05 2E-09 61.7 5.6 25 10-34 65-89 (447)
236 3cwq_A Para family chromosome 97.5 0.0013 4.6E-08 48.1 10.5 85 61-152 68-153 (209)
237 2xxa_A Signal recognition part 97.5 0.00058 2E-08 55.8 9.2 83 61-154 184-273 (433)
238 1ye8_A Protein THEP1, hypothet 97.5 6.2E-05 2.1E-09 54.0 3.1 23 13-35 1-23 (178)
239 2yv5_A YJEQ protein; hydrolase 97.4 0.00026 9E-09 55.1 6.4 22 14-36 167-188 (302)
240 1kgd_A CASK, peripheral plasma 97.4 8.5E-05 2.9E-09 53.2 3.0 22 14-35 7-28 (180)
241 1t9h_A YLOQ, probable GTPase E 97.4 4E-05 1.4E-09 59.7 1.1 24 13-36 174-197 (307)
242 1lvg_A Guanylate kinase, GMP k 97.3 0.00011 3.6E-09 53.6 3.0 23 13-35 5-27 (198)
243 2rcn_A Probable GTPase ENGC; Y 97.3 0.00013 4.6E-09 57.9 3.6 24 14-37 217-240 (358)
244 1zp6_A Hypothetical protein AT 97.3 0.00019 6.4E-09 51.7 3.8 23 13-35 10-32 (191)
245 3a00_A Guanylate kinase, GMP k 97.2 0.00015 5.2E-09 52.2 2.9 21 15-35 4-24 (186)
246 3tr0_A Guanylate kinase, GMP k 97.2 0.00017 5.7E-09 52.5 3.0 23 13-35 8-30 (205)
247 1s96_A Guanylate kinase, GMP k 97.2 0.00018 6.3E-09 53.3 3.0 25 12-36 16-40 (219)
248 3ney_A 55 kDa erythrocyte memb 97.2 0.00019 6.4E-09 52.3 3.0 23 13-35 20-42 (197)
249 1znw_A Guanylate kinase, GMP k 97.2 0.00019 6.6E-09 52.6 2.9 24 13-36 21-44 (207)
250 4gp7_A Metallophosphoesterase; 97.2 0.00018 6.3E-09 51.0 2.7 20 14-33 11-30 (171)
251 1u0l_A Probable GTPase ENGC; p 97.2 0.00024 8.1E-09 55.3 3.5 24 14-37 171-194 (301)
252 1via_A Shikimate kinase; struc 97.2 0.00021 7.1E-09 50.8 2.9 21 14-34 6-26 (175)
253 1ex7_A Guanylate kinase; subst 97.2 0.00022 7.4E-09 51.5 3.0 21 15-35 4-24 (186)
254 1z6g_A Guanylate kinase; struc 97.2 0.0002 7E-09 52.9 2.9 24 13-36 24-47 (218)
255 2ffh_A Protein (FFH); SRP54, s 97.2 0.0017 5.9E-08 52.8 8.5 85 61-155 181-271 (425)
256 3c8u_A Fructokinase; YP_612366 97.2 0.00024 8.2E-09 52.1 3.2 26 10-35 20-45 (208)
257 3tau_A Guanylate kinase, GMP k 97.1 0.00025 8.4E-09 52.1 3.0 24 13-36 9-32 (208)
258 1knq_A Gluconate kinase; ALFA/ 97.1 0.00036 1.2E-08 49.5 3.5 22 13-34 9-30 (175)
259 1htw_A HI0065; nucleotide-bind 97.0 0.00033 1.1E-08 49.1 2.9 24 13-36 34-57 (158)
260 3tif_A Uncharacterized ABC tra 97.0 0.00031 1.1E-08 52.6 2.9 23 14-36 33-55 (235)
261 1kag_A SKI, shikimate kinase I 97.0 0.00039 1.3E-08 49.1 3.0 22 13-34 5-26 (173)
262 3lw7_A Adenylate kinase relate 97.0 0.00041 1.4E-08 48.9 3.1 20 13-32 2-21 (179)
263 2j41_A Guanylate kinase; GMP, 97.0 0.00037 1.3E-08 50.7 3.0 24 13-36 7-30 (207)
264 2vp4_A Deoxynucleoside kinase; 97.0 0.00044 1.5E-08 51.5 3.3 26 10-35 18-43 (230)
265 2pcj_A ABC transporter, lipopr 97.0 0.00036 1.2E-08 51.8 2.8 23 14-36 32-54 (224)
266 2qor_A Guanylate kinase; phosp 97.0 0.00038 1.3E-08 50.8 2.9 25 11-35 11-35 (204)
267 3asz_A Uridine kinase; cytidin 97.0 0.00041 1.4E-08 50.7 3.0 25 11-35 5-29 (211)
268 2bdt_A BH3686; alpha-beta prot 97.0 0.00041 1.4E-08 49.9 2.9 21 14-34 4-24 (189)
269 2chg_A Replication factor C sm 97.0 0.0019 6.4E-08 47.0 6.6 22 14-35 40-61 (226)
270 2onk_A Molybdate/tungstate ABC 97.0 0.00044 1.5E-08 52.0 3.1 23 14-36 26-48 (240)
271 2i3b_A HCR-ntpase, human cance 97.0 0.00042 1.4E-08 50.1 2.8 22 14-35 3-24 (189)
272 3co5_A Putative two-component 97.0 0.0018 6.2E-08 44.4 6.0 23 13-35 28-50 (143)
273 1ly1_A Polynucleotide kinase; 96.9 0.00053 1.8E-08 48.7 3.3 22 13-34 3-24 (181)
274 3kb2_A SPBC2 prophage-derived 96.9 0.00049 1.7E-08 48.4 3.1 21 14-34 3-23 (173)
275 1sgw_A Putative ABC transporte 96.9 0.00047 1.6E-08 50.9 3.0 23 14-36 37-59 (214)
276 4eun_A Thermoresistant glucoki 96.9 0.00048 1.6E-08 50.1 3.0 23 12-34 29-51 (200)
277 2bbw_A Adenylate kinase 4, AK4 96.9 0.00054 1.8E-08 51.5 3.3 21 13-33 28-48 (246)
278 1zd8_A GTP:AMP phosphotransfer 96.9 0.00051 1.7E-08 51.0 3.1 22 13-34 8-29 (227)
279 3gfo_A Cobalt import ATP-bindi 96.9 0.00047 1.6E-08 52.9 3.0 23 14-36 36-58 (275)
280 1b0u_A Histidine permease; ABC 96.9 0.00047 1.6E-08 52.5 3.0 23 14-36 34-56 (262)
281 1uf9_A TT1252 protein; P-loop, 96.9 0.00068 2.3E-08 49.1 3.7 24 12-35 8-31 (203)
282 2cbz_A Multidrug resistance-as 96.9 0.00048 1.6E-08 51.7 2.9 23 14-36 33-55 (237)
283 1np6_A Molybdopterin-guanine d 96.9 0.00055 1.9E-08 48.8 3.0 23 13-35 7-29 (174)
284 3fb4_A Adenylate kinase; psych 96.9 0.00053 1.8E-08 50.4 3.0 22 13-34 1-22 (216)
285 4g1u_C Hemin import ATP-bindin 96.9 0.00052 1.8E-08 52.4 3.0 23 14-36 39-61 (266)
286 3dl0_A Adenylate kinase; phosp 96.9 0.00057 2E-08 50.2 3.1 22 13-34 1-22 (216)
287 1g6h_A High-affinity branched- 96.9 0.00051 1.8E-08 52.1 2.9 23 14-36 35-57 (257)
288 1mv5_A LMRA, multidrug resista 96.9 0.0006 2E-08 51.3 3.2 23 14-36 30-52 (243)
289 2eyu_A Twitching motility prot 96.9 0.00054 1.8E-08 52.1 3.0 23 13-35 26-48 (261)
290 2pze_A Cystic fibrosis transme 96.9 0.00055 1.9E-08 51.0 3.0 23 14-36 36-58 (229)
291 2grj_A Dephospho-COA kinase; T 96.9 0.00076 2.6E-08 48.9 3.6 35 1-35 1-35 (192)
292 3iij_A Coilin-interacting nucl 96.9 0.00061 2.1E-08 48.5 3.0 23 12-34 11-33 (180)
293 2olj_A Amino acid ABC transpor 96.9 0.00057 1.9E-08 52.1 3.0 23 14-36 52-74 (263)
294 2ff7_A Alpha-hemolysin translo 96.9 0.00062 2.1E-08 51.4 3.1 23 14-36 37-59 (247)
295 1ji0_A ABC transporter; ATP bi 96.8 0.00058 2E-08 51.3 2.9 23 14-36 34-56 (240)
296 3ec2_A DNA replication protein 96.8 0.00055 1.9E-08 48.8 2.7 25 12-36 38-62 (180)
297 1vpl_A ABC transporter, ATP-bi 96.8 0.0006 2E-08 51.8 3.0 23 14-36 43-65 (256)
298 3vaa_A Shikimate kinase, SK; s 96.8 0.00071 2.4E-08 49.1 3.3 22 13-34 26-47 (199)
299 3sr0_A Adenylate kinase; phosp 96.8 0.00068 2.3E-08 49.7 3.1 22 13-34 1-22 (206)
300 2qi9_C Vitamin B12 import ATP- 96.8 0.00062 2.1E-08 51.4 3.0 23 14-36 28-50 (249)
301 2jaq_A Deoxyguanosine kinase; 96.8 0.0007 2.4E-08 49.0 3.2 21 14-34 2-22 (205)
302 3t61_A Gluconokinase; PSI-biol 96.8 0.00064 2.2E-08 49.4 3.0 22 13-34 19-40 (202)
303 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00064 2.2E-08 51.4 3.0 22 14-35 31-52 (250)
304 2if2_A Dephospho-COA kinase; a 96.8 0.00064 2.2E-08 49.4 2.9 22 13-34 2-23 (204)
305 2v9p_A Replication protein E1; 96.8 0.00067 2.3E-08 52.8 3.1 23 13-35 127-149 (305)
306 1sxj_E Activator 1 40 kDa subu 96.8 0.0039 1.3E-07 49.2 7.6 22 14-35 38-59 (354)
307 3b85_A Phosphate starvation-in 96.8 0.00048 1.6E-08 50.6 2.1 22 14-35 24-45 (208)
308 2zu0_C Probable ATP-dependent 96.8 0.00069 2.4E-08 51.7 3.1 22 14-35 48-69 (267)
309 3aez_A Pantothenate kinase; tr 96.8 0.00087 3E-08 52.4 3.7 27 9-35 87-113 (312)
310 2ghi_A Transport protein; mult 96.8 0.00072 2.4E-08 51.4 3.1 22 14-35 48-69 (260)
311 2qt1_A Nicotinamide riboside k 96.8 0.00095 3.2E-08 48.7 3.7 25 11-35 20-44 (207)
312 2ixe_A Antigen peptide transpo 96.8 0.00067 2.3E-08 51.9 2.9 23 14-36 47-69 (271)
313 1qhx_A CPT, protein (chloramph 96.8 0.00073 2.5E-08 47.9 3.0 22 13-34 4-25 (178)
314 1jjv_A Dephospho-COA kinase; P 96.8 0.0009 3.1E-08 48.7 3.5 22 13-34 3-24 (206)
315 1nks_A Adenylate kinase; therm 96.8 0.00082 2.8E-08 48.2 3.2 22 13-34 2-23 (194)
316 2ihy_A ABC transporter, ATP-bi 96.8 0.00076 2.6E-08 51.8 3.2 23 14-36 49-71 (279)
317 3cm0_A Adenylate kinase; ATP-b 96.8 0.001 3.5E-08 47.5 3.7 23 12-34 4-26 (186)
318 1cke_A CK, MSSA, protein (cyti 96.8 0.0008 2.7E-08 49.7 3.1 22 13-34 6-27 (227)
319 2nq2_C Hypothetical ABC transp 96.8 0.00073 2.5E-08 51.2 2.9 23 14-36 33-55 (253)
320 3lnc_A Guanylate kinase, GMP k 96.8 0.00046 1.6E-08 51.4 1.7 23 13-35 28-51 (231)
321 2yz2_A Putative ABC transporte 96.7 0.00075 2.5E-08 51.5 2.9 23 14-36 35-57 (266)
322 1kht_A Adenylate kinase; phosp 96.7 0.00092 3.2E-08 47.8 3.2 22 13-34 4-25 (192)
323 1nn5_A Similar to deoxythymidy 96.7 0.00097 3.3E-08 48.7 3.3 22 13-34 10-31 (215)
324 2cdn_A Adenylate kinase; phosp 96.7 0.001 3.5E-08 48.3 3.4 24 11-34 19-42 (201)
325 3tlx_A Adenylate kinase 2; str 96.7 0.0011 3.7E-08 49.9 3.6 24 11-34 28-51 (243)
326 1aky_A Adenylate kinase; ATP:A 96.7 0.00088 3E-08 49.4 3.0 23 12-34 4-26 (220)
327 1ukz_A Uridylate kinase; trans 96.7 0.0013 4.5E-08 47.7 3.9 24 11-34 14-37 (203)
328 2rhm_A Putative kinase; P-loop 96.7 0.00098 3.3E-08 47.8 3.1 22 13-34 6-27 (193)
329 2ehv_A Hypothetical protein PH 96.7 0.00092 3.1E-08 50.0 3.0 21 14-34 32-52 (251)
330 1y63_A LMAJ004144AAA protein; 96.7 0.001 3.6E-08 47.6 3.2 24 12-35 10-33 (184)
331 2pjz_A Hypothetical protein ST 96.7 0.00099 3.4E-08 50.7 3.2 23 14-36 32-54 (263)
332 1e4v_A Adenylate kinase; trans 96.7 0.00091 3.1E-08 49.1 2.9 22 13-34 1-22 (214)
333 2jeo_A Uridine-cytidine kinase 96.7 0.0011 3.6E-08 49.9 3.3 24 11-34 24-47 (245)
334 4a74_A DNA repair and recombin 96.7 0.00083 2.8E-08 49.6 2.7 23 13-35 26-48 (231)
335 3uie_A Adenylyl-sulfate kinase 96.7 0.0011 3.9E-08 48.1 3.4 24 12-35 25-48 (200)
336 3trf_A Shikimate kinase, SK; a 96.7 0.001 3.6E-08 47.4 3.1 22 13-34 6-27 (185)
337 2f1r_A Molybdopterin-guanine d 96.6 0.00043 1.5E-08 49.2 0.9 22 14-35 4-25 (171)
338 2plr_A DTMP kinase, probable t 96.6 0.0012 4.1E-08 48.1 3.3 22 13-34 5-26 (213)
339 1tev_A UMP-CMP kinase; ploop, 96.6 0.0013 4.5E-08 47.2 3.4 22 13-34 4-25 (196)
340 1gvn_B Zeta; postsegregational 96.6 0.0012 4.2E-08 50.9 3.4 24 11-34 32-55 (287)
341 1odf_A YGR205W, hypothetical 3 96.6 0.0014 4.9E-08 50.6 3.8 25 10-34 29-53 (290)
342 1xjc_A MOBB protein homolog; s 96.6 0.0012 4.1E-08 46.8 3.1 22 13-34 5-26 (169)
343 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0015 5.2E-08 49.5 3.7 22 13-34 5-26 (260)
344 3tqc_A Pantothenate kinase; bi 96.6 0.0015 5.1E-08 51.2 3.7 26 9-34 89-114 (321)
345 2kjq_A DNAA-related protein; s 96.6 0.00078 2.7E-08 46.7 1.9 23 14-36 38-60 (149)
346 1lw7_A Transcriptional regulat 96.6 0.00093 3.2E-08 53.4 2.5 24 12-35 170-193 (365)
347 2pt5_A Shikimate kinase, SK; a 96.6 0.0014 4.7E-08 46.0 3.2 21 14-34 2-22 (168)
348 2wwf_A Thymidilate kinase, put 96.6 0.0015 5.2E-08 47.6 3.5 23 12-34 10-32 (212)
349 3fvq_A Fe(3+) IONS import ATP- 96.6 0.0011 3.8E-08 52.7 2.8 23 14-36 32-54 (359)
350 3jvv_A Twitching mobility prot 96.6 0.0012 4.1E-08 52.6 3.0 22 14-35 125-146 (356)
351 2x8a_A Nuclear valosin-contain 96.6 0.0012 4.2E-08 50.5 3.0 21 15-35 47-67 (274)
352 2xb4_A Adenylate kinase; ATP-b 96.6 0.0014 4.9E-08 48.4 3.2 21 14-34 2-22 (223)
353 1rj9_A FTSY, signal recognitio 96.6 0.0012 4.1E-08 51.4 2.9 23 12-34 102-124 (304)
354 3nh6_A ATP-binding cassette SU 96.6 0.00077 2.6E-08 52.5 1.8 22 14-35 82-103 (306)
355 3umf_A Adenylate kinase; rossm 96.6 0.002 6.8E-08 47.6 3.9 21 14-34 31-51 (217)
356 1rz3_A Hypothetical protein rb 96.6 0.0015 5.2E-08 47.4 3.3 25 10-34 20-44 (201)
357 2bbs_A Cystic fibrosis transme 96.5 0.0012 4.2E-08 50.9 2.9 23 14-36 66-88 (290)
358 1z47_A CYSA, putative ABC-tran 96.5 0.0013 4.4E-08 52.3 3.0 23 14-36 43-65 (355)
359 3b9q_A Chloroplast SRP recepto 96.5 0.0014 4.7E-08 51.0 3.0 24 11-34 99-122 (302)
360 2v54_A DTMP kinase, thymidylat 96.5 0.0015 5.1E-08 47.3 3.0 23 13-35 5-27 (204)
361 3tui_C Methionine import ATP-b 96.5 0.0014 4.9E-08 52.2 3.1 23 14-36 56-78 (366)
362 2yyz_A Sugar ABC transporter, 96.5 0.0014 4.8E-08 52.2 3.0 23 14-36 31-53 (359)
363 2it1_A 362AA long hypothetical 96.5 0.0015 5E-08 52.1 3.1 23 14-36 31-53 (362)
364 1sq5_A Pantothenate kinase; P- 96.5 0.0016 5.5E-08 50.7 3.3 25 10-34 78-102 (308)
365 2yvu_A Probable adenylyl-sulfa 96.5 0.0021 7.2E-08 46.0 3.7 24 11-34 12-35 (186)
366 1ixz_A ATP-dependent metallopr 96.5 0.0015 5E-08 49.3 3.0 21 15-35 52-72 (254)
367 1qf9_A UMP/CMP kinase, protein 96.5 0.0018 6.3E-08 46.3 3.4 22 13-34 7-28 (194)
368 3rlf_A Maltose/maltodextrin im 96.5 0.0015 5.1E-08 52.4 3.1 23 14-36 31-53 (381)
369 1zak_A Adenylate kinase; ATP:A 96.5 0.0012 4.1E-08 48.7 2.4 22 13-34 6-27 (222)
370 1uj2_A Uridine-cytidine kinase 96.5 0.0017 5.7E-08 49.0 3.2 25 10-34 20-44 (252)
371 1jbk_A CLPB protein; beta barr 96.5 0.0018 6E-08 46.0 3.3 23 13-35 44-66 (195)
372 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0014 4.9E-08 51.6 2.8 23 14-36 173-195 (330)
373 1v43_A Sugar-binding transport 96.5 0.0016 5.5E-08 52.1 3.1 23 14-36 39-61 (372)
374 1g29_1 MALK, maltose transport 96.4 0.0016 5.3E-08 52.2 3.0 23 14-36 31-53 (372)
375 2gza_A Type IV secretion syste 96.4 0.0014 4.9E-08 52.2 2.8 24 13-36 176-199 (361)
376 2ze6_A Isopentenyl transferase 96.4 0.0016 5.6E-08 49.2 3.0 21 14-34 3-23 (253)
377 2pbr_A DTMP kinase, thymidylat 96.4 0.0018 6.3E-08 46.4 3.1 21 14-34 2-22 (195)
378 2z0h_A DTMP kinase, thymidylat 96.4 0.0018 6.2E-08 46.6 3.1 21 14-34 2-22 (197)
379 2ewv_A Twitching motility prot 96.4 0.0017 5.7E-08 52.0 3.1 23 13-35 137-159 (372)
380 1ak2_A Adenylate kinase isoenz 96.4 0.0019 6.4E-08 48.1 3.2 23 12-34 16-38 (233)
381 3d3q_A TRNA delta(2)-isopenten 96.4 0.002 6.9E-08 50.7 3.3 22 13-34 8-29 (340)
382 2p5t_B PEZT; postsegregational 96.4 0.0014 4.9E-08 49.5 2.4 25 10-34 30-54 (253)
383 2c95_A Adenylate kinase 1; tra 96.4 0.0019 6.5E-08 46.4 3.0 22 13-34 10-31 (196)
384 1gtv_A TMK, thymidylate kinase 96.4 0.00061 2.1E-08 49.8 0.3 21 14-34 2-22 (214)
385 3be4_A Adenylate kinase; malar 96.4 0.002 6.7E-08 47.4 3.0 22 13-34 6-27 (217)
386 2bwj_A Adenylate kinase 5; pho 96.4 0.0019 6.7E-08 46.5 2.9 23 12-34 12-34 (199)
387 1p9r_A General secretion pathw 96.3 0.0019 6.7E-08 52.5 3.0 22 14-35 169-190 (418)
388 4eaq_A DTMP kinase, thymidylat 96.3 0.0034 1.2E-07 46.7 4.0 25 11-35 25-49 (229)
389 2iyv_A Shikimate kinase, SK; t 96.3 0.0018 6.1E-08 46.2 2.4 22 13-34 3-24 (184)
390 1iy2_A ATP-dependent metallopr 96.3 0.0021 7.3E-08 49.1 3.0 21 15-35 76-96 (278)
391 4e22_A Cytidylate kinase; P-lo 96.3 0.0025 8.5E-08 48.1 3.3 21 13-33 28-48 (252)
392 2og2_A Putative signal recogni 96.3 0.0022 7.5E-08 51.0 3.0 24 11-34 156-179 (359)
393 3d31_A Sulfate/molybdate ABC t 96.3 0.0013 4.5E-08 52.1 1.7 23 14-36 28-50 (348)
394 1e6c_A Shikimate kinase; phosp 96.3 0.0024 8.1E-08 44.9 2.9 22 13-34 3-24 (173)
395 1vht_A Dephospho-COA kinase; s 96.3 0.0028 9.6E-08 46.5 3.4 22 13-34 5-26 (218)
396 1in4_A RUVB, holliday junction 96.3 0.0021 7.3E-08 50.6 2.9 23 13-35 52-74 (334)
397 1p5z_B DCK, deoxycytidine kina 96.3 0.002 6.8E-08 48.9 2.7 26 10-35 22-47 (263)
398 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0023 7.8E-08 47.2 2.9 22 14-35 25-46 (235)
399 2pez_A Bifunctional 3'-phospho 96.3 0.003 1E-07 44.8 3.3 23 12-34 5-27 (179)
400 3gd7_A Fusion complex of cysti 96.2 0.0022 7.4E-08 51.7 2.8 22 14-35 49-70 (390)
401 2oap_1 GSPE-2, type II secreti 96.2 0.0022 7.7E-08 53.5 2.9 24 13-36 261-284 (511)
402 2vli_A Antibiotic resistance p 96.2 0.0017 5.7E-08 46.2 1.8 22 13-34 6-27 (183)
403 2p65_A Hypothetical protein PF 96.2 0.0021 7.2E-08 45.5 2.4 23 13-35 44-66 (187)
404 4ido_A Atlastin-1; GTPase, GTP 96.2 0.012 4.1E-07 48.1 7.0 25 9-33 64-88 (457)
405 3kta_A Chromosome segregation 96.2 0.0026 8.9E-08 45.2 2.8 21 14-34 28-48 (182)
406 1zuh_A Shikimate kinase; alpha 96.2 0.0032 1.1E-07 44.2 3.2 23 12-34 7-29 (168)
407 2yhs_A FTSY, cell division pro 96.2 0.0026 9E-08 52.6 3.0 23 12-34 293-315 (503)
408 1lv7_A FTSH; alpha/beta domain 96.2 0.0029 1E-07 47.7 3.0 23 13-35 46-68 (257)
409 3crm_A TRNA delta(2)-isopenten 96.2 0.004 1.4E-07 48.7 3.8 22 13-34 6-27 (323)
410 3uc9_A Increased recombination 96.1 0.013 4.3E-07 43.4 6.2 87 9-101 26-119 (233)
411 2w58_A DNAI, primosome compone 96.1 0.0033 1.1E-07 45.5 3.1 23 13-35 55-77 (202)
412 2f6r_A COA synthase, bifunctio 96.1 0.0036 1.2E-07 48.1 3.5 24 11-34 74-97 (281)
413 3bos_A Putative DNA replicatio 96.1 0.0033 1.1E-07 46.5 3.1 24 12-35 52-75 (242)
414 1oxx_K GLCV, glucose, ABC tran 96.1 0.0013 4.5E-08 52.2 1.0 23 14-36 33-55 (353)
415 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0023 8E-08 52.7 2.5 24 13-36 139-162 (460)
416 3u61_B DNA polymerase accessor 96.1 0.11 3.8E-06 40.3 12.0 21 15-35 51-71 (324)
417 1nij_A Hypothetical protein YJ 96.1 0.0022 7.5E-08 50.2 2.1 24 13-36 5-28 (318)
418 2obl_A ESCN; ATPase, hydrolase 96.1 0.0031 1.1E-07 50.0 3.0 24 13-36 72-95 (347)
419 1zcb_A G alpha I/13; GTP-bindi 96.1 0.0036 1.2E-07 49.9 3.3 23 10-32 31-53 (362)
420 3nwj_A ATSK2; P loop, shikimat 96.1 0.0031 1.1E-07 47.6 2.8 22 13-34 49-70 (250)
421 3r20_A Cytidylate kinase; stru 96.1 0.0036 1.2E-07 46.7 3.0 23 12-34 9-31 (233)
422 1cr0_A DNA primase/helicase; R 96.1 0.003 1E-07 48.8 2.7 23 14-36 37-59 (296)
423 2cvh_A DNA repair and recombin 96.0 0.0036 1.2E-07 45.8 2.9 21 14-34 22-42 (220)
424 1m7g_A Adenylylsulfate kinase; 96.0 0.0043 1.5E-07 45.4 3.3 23 12-34 25-47 (211)
425 1n0w_A DNA repair protein RAD5 96.0 0.0036 1.2E-07 46.5 3.0 22 14-35 26-47 (243)
426 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 0.025 8.5E-07 45.1 7.9 19 15-33 26-44 (365)
427 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.0048 1.6E-07 42.7 3.0 19 15-33 26-44 (149)
428 3t15_A Ribulose bisphosphate c 95.9 0.0059 2E-07 47.1 3.8 25 11-35 35-59 (293)
429 1tue_A Replication protein E1; 95.9 0.0036 1.2E-07 45.7 2.4 21 14-34 60-80 (212)
430 3foz_A TRNA delta(2)-isopenten 95.9 0.0066 2.3E-07 47.2 4.0 22 13-34 11-32 (316)
431 1ltq_A Polynucleotide kinase; 95.9 0.0053 1.8E-07 47.4 3.4 22 13-34 3-24 (301)
432 1svm_A Large T antigen; AAA+ f 95.9 0.0044 1.5E-07 49.7 2.9 22 13-34 170-191 (377)
433 1njg_A DNA polymerase III subu 95.9 0.0048 1.6E-07 45.4 3.0 22 14-35 47-68 (250)
434 1yqt_A RNAse L inhibitor; ATP- 95.9 0.005 1.7E-07 51.8 3.3 24 13-36 48-71 (538)
435 4dzz_A Plasmid partitioning pr 95.9 0.022 7.4E-07 41.1 6.4 85 61-152 76-162 (206)
436 3n70_A Transport activator; si 95.9 0.0053 1.8E-07 42.1 2.9 23 13-35 25-47 (145)
437 2dpy_A FLII, flagellum-specifi 95.8 0.0046 1.6E-07 50.6 3.0 24 13-36 158-181 (438)
438 3b9p_A CG5977-PA, isoform A; A 95.8 0.0048 1.6E-07 47.5 2.9 23 12-34 54-76 (297)
439 3euj_A Chromosome partition pr 95.8 0.0047 1.6E-07 51.0 3.0 21 14-34 31-51 (483)
440 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.0053 1.8E-07 46.2 3.0 22 13-34 40-61 (262)
441 1q3t_A Cytidylate kinase; nucl 95.8 0.0057 2E-07 45.5 3.1 25 10-34 14-38 (236)
442 3h4m_A Proteasome-activating n 95.8 0.0056 1.9E-07 46.8 3.1 23 13-35 52-74 (285)
443 3pfi_A Holliday junction ATP-d 95.8 0.015 5E-07 45.6 5.6 22 13-34 56-77 (338)
444 3syl_A Protein CBBX; photosynt 95.8 0.0062 2.1E-07 47.1 3.3 25 10-34 65-89 (309)
445 3ozx_A RNAse L inhibitor; ATP 95.7 0.0052 1.8E-07 51.6 3.0 23 14-36 27-49 (538)
446 3b60_A Lipid A export ATP-bind 95.7 0.0052 1.8E-07 52.2 3.0 23 14-36 371-393 (582)
447 3gmt_A Adenylate kinase; ssgci 95.7 0.0068 2.3E-07 45.1 3.2 24 11-34 7-30 (230)
448 3cf0_A Transitional endoplasmi 95.7 0.0056 1.9E-07 47.4 2.9 23 13-35 50-72 (301)
449 3b5x_A Lipid A export ATP-bind 95.7 0.0059 2E-07 51.8 3.2 23 14-36 371-393 (582)
450 3j16_B RLI1P; ribosome recycli 95.7 0.0058 2E-07 52.1 3.1 23 14-36 105-127 (608)
451 1l8q_A Chromosomal replication 95.7 0.0059 2E-07 47.7 2.9 23 13-35 38-60 (324)
452 1nlf_A Regulatory protein REPA 95.6 0.0058 2E-07 46.7 2.7 21 14-34 32-52 (279)
453 1d2n_A N-ethylmaleimide-sensit 95.6 0.0094 3.2E-07 45.3 3.8 25 11-35 63-87 (272)
454 2qmh_A HPR kinase/phosphorylas 95.6 0.0074 2.5E-07 43.8 3.0 24 13-36 35-58 (205)
455 2px0_A Flagellar biosynthesis 95.6 0.0061 2.1E-07 47.2 2.7 85 61-155 183-273 (296)
456 3zvl_A Bifunctional polynucleo 95.6 0.007 2.4E-07 49.2 3.1 23 12-34 258-280 (416)
457 4fcw_A Chaperone protein CLPB; 95.6 0.0098 3.3E-07 46.0 3.8 25 11-35 46-70 (311)
458 3bk7_A ABC transporter ATP-bin 95.6 0.0072 2.5E-07 51.5 3.2 24 13-36 118-141 (607)
459 4a82_A Cystic fibrosis transme 95.5 0.0053 1.8E-07 52.1 2.3 22 14-35 369-390 (578)
460 3ozx_A RNAse L inhibitor; ATP 95.5 0.0071 2.4E-07 50.8 3.0 24 14-37 296-319 (538)
461 1vma_A Cell division protein F 95.5 0.0077 2.6E-07 46.8 3.0 86 62-157 188-285 (306)
462 1yqt_A RNAse L inhibitor; ATP- 95.5 0.0082 2.8E-07 50.5 3.3 24 14-37 314-337 (538)
463 2yl4_A ATP-binding cassette SU 95.5 0.0054 1.8E-07 52.2 2.2 23 14-36 372-394 (595)
464 2qby_A CDC6 homolog 1, cell di 95.5 0.007 2.4E-07 48.0 2.7 23 13-35 46-68 (386)
465 3ake_A Cytidylate kinase; CMP 95.5 0.0091 3.1E-07 43.2 3.1 21 14-34 4-24 (208)
466 3qf4_B Uncharacterized ABC tra 95.4 0.0061 2.1E-07 51.9 2.4 23 14-36 383-405 (598)
467 3bk7_A ABC transporter ATP-bin 95.4 0.0088 3E-07 51.0 3.3 24 14-37 384-407 (607)
468 3v9p_A DTMP kinase, thymidylat 95.4 0.0069 2.3E-07 45.0 2.3 24 11-34 24-47 (227)
469 1ofh_A ATP-dependent HSL prote 95.4 0.0088 3E-07 46.1 3.0 22 13-34 51-72 (310)
470 2dr3_A UPF0273 protein PH0284; 95.4 0.0086 2.9E-07 44.5 2.8 21 14-34 25-45 (247)
471 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.0087 3E-07 46.9 2.9 24 12-35 45-68 (322)
472 4b4t_K 26S protease regulatory 95.4 0.0089 3.1E-07 48.7 3.0 22 13-34 207-228 (428)
473 3qf4_A ABC transporter, ATP-bi 95.4 0.0069 2.4E-07 51.5 2.4 22 14-35 371-392 (587)
474 1fnn_A CDC6P, cell division co 95.3 0.0098 3.4E-07 47.4 3.2 22 14-35 46-67 (389)
475 1pzn_A RAD51, DNA repair and r 95.3 0.0083 2.8E-07 47.6 2.7 23 13-35 132-154 (349)
476 3ea0_A ATPase, para family; al 95.3 0.18 6.2E-06 37.2 10.0 86 61-154 119-204 (245)
477 4b4t_M 26S protease regulatory 95.3 0.0094 3.2E-07 48.6 3.0 24 12-35 215-238 (434)
478 1sxj_C Activator 1 40 kDa subu 95.3 0.0092 3.1E-07 47.0 2.9 22 14-35 48-69 (340)
479 3eie_A Vacuolar protein sortin 95.3 0.013 4.6E-07 45.7 3.7 25 11-35 50-74 (322)
480 3ld9_A DTMP kinase, thymidylat 95.3 0.013 4.4E-07 43.4 3.4 24 11-34 20-43 (223)
481 3j16_B RLI1P; ribosome recycli 95.3 0.0099 3.4E-07 50.7 3.1 23 15-37 381-403 (608)
482 2ga8_A Hypothetical 39.9 kDa p 95.3 0.013 4.5E-07 46.4 3.6 23 12-34 24-46 (359)
483 2qgz_A Helicase loader, putati 95.2 0.011 3.8E-07 45.9 3.1 23 12-34 152-174 (308)
484 3exa_A TRNA delta(2)-isopenten 95.2 0.011 3.9E-07 45.9 3.1 23 13-35 4-26 (322)
485 4b4t_L 26S protease subunit RP 95.2 0.011 3.6E-07 48.4 3.0 24 12-35 215-238 (437)
486 3qks_A DNA double-strand break 95.2 0.013 4.3E-07 42.7 3.0 20 14-33 25-44 (203)
487 3a8t_A Adenylate isopentenyltr 95.1 0.013 4.3E-07 46.1 3.1 23 13-35 41-63 (339)
488 2r62_A Cell division protease 95.1 0.0052 1.8E-07 46.6 0.8 22 14-35 46-67 (268)
489 1sxj_D Activator 1 41 kDa subu 95.1 0.012 4E-07 46.3 2.9 22 14-35 60-81 (353)
490 2v1u_A Cell division control p 95.1 0.01 3.5E-07 47.2 2.5 24 12-35 44-67 (387)
491 4b4t_J 26S protease regulatory 95.1 0.012 4.2E-07 47.4 2.9 23 13-35 183-205 (405)
492 2o5v_A DNA replication and rep 95.1 0.093 3.2E-06 41.7 8.0 21 14-34 28-48 (359)
493 3tqf_A HPR(Ser) kinase; transf 95.1 0.015 5E-07 41.2 2.9 24 13-36 17-40 (181)
494 2ocp_A DGK, deoxyguanosine kin 95.0 0.015 5E-07 43.4 3.1 23 13-35 3-25 (241)
495 4edh_A DTMP kinase, thymidylat 95.0 0.014 4.8E-07 42.8 2.9 22 13-34 7-28 (213)
496 2qp9_X Vacuolar protein sortin 95.0 0.013 4.6E-07 46.4 3.0 23 13-35 85-107 (355)
497 2iw3_A Elongation factor 3A; a 95.0 0.015 5.2E-07 52.1 3.5 24 14-37 463-486 (986)
498 2qen_A Walker-type ATPase; unk 95.0 0.014 4.7E-07 45.7 3.0 22 14-35 33-54 (350)
499 3uk6_A RUVB-like 2; hexameric 95.0 0.013 4.6E-07 46.3 2.9 23 13-35 71-93 (368)
500 1qhl_A Protein (cell division 95.0 0.0018 6.1E-08 48.2 -2.1 22 15-36 30-51 (227)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=9.7e-45 Score=272.11 Aligned_cols=169 Identities=34% Similarity=0.664 Sum_probs=146.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
+-..+||+|+|.+|||||||+++|+.+.|...+.+|.+.++....+.+++..+++.||||+|++.|..++..++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
|+|||++++++|+.+..|+..+......++|++||+||+|+.+.+.+..+++..++..+++++++|||++|.||+++|+.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998887778999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 042687 169 ILLDIYHII 177 (217)
Q Consensus 169 l~~~~~~~~ 177 (217)
|++.+....
T Consensus 170 i~~~i~~~~ 178 (216)
T 4dkx_A 170 VAAALPGME 178 (216)
T ss_dssp HHHHC----
T ss_pred HHHHHHhhh
Confidence 998876543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.6e-37 Score=231.70 Aligned_cols=176 Identities=49% Similarity=0.834 Sum_probs=160.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 35678999999999999999999999999988888888888888888899999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887766899999999999987777778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 042687 168 TILLDIYHIISKKALA 183 (217)
Q Consensus 168 ~l~~~~~~~~~~~~~~ 183 (217)
+|.+.+.+........
T Consensus 164 ~l~~~i~~~~~~~~~~ 179 (206)
T 2bcg_Y 164 TMARQIKESMSQQNLN 179 (206)
T ss_dssp HHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999998876655544
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-38 Score=237.75 Aligned_cols=184 Identities=63% Similarity=0.987 Sum_probs=148.3
Q ss_pred CCCCCCC-CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchh
Q 042687 1 MAYKVDH-EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITS 79 (217)
Q Consensus 1 m~~~~~~-~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 79 (217)
|+..... ..+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 4444332 346789999999999999999999999999888888888888888888999889999999999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCC
Q 042687 80 AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEA 159 (217)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 159 (217)
.+++.+|++|+|||++++.+++.+..|+..+......++|++||+||+|+...+.+..+++..++...+++++++||+++
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999999999999998876668999999999999877777788899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLDIYHIISKKALAA 184 (217)
Q Consensus 160 ~gv~~~~~~l~~~~~~~~~~~~~~~ 184 (217)
.|++++|++|++.+.+...+.....
T Consensus 161 ~gi~~l~~~l~~~i~~~~~~~~~~~ 185 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQKVSKHQMDL 185 (223)
T ss_dssp CCHHHHHHHHHHHHTTCC-------
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCc
Confidence 9999999999999988877766655
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=226.27 Aligned_cols=167 Identities=32% Similarity=0.531 Sum_probs=149.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
....++|+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 34569999999999999999999999988777777766544 45667888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
|+|||+++++++..+..|+..+..... .++|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998877653 5799999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 042687 168 TILLDIYHI 176 (217)
Q Consensus 168 ~l~~~~~~~ 176 (217)
+|++.+.+.
T Consensus 170 ~l~~~i~~~ 178 (206)
T 2bov_A 170 DLMREIRAR 178 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999988764
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=8.3e-36 Score=220.36 Aligned_cols=173 Identities=50% Similarity=0.837 Sum_probs=158.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 45678999999999999999999999999988888888888888889999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+...+...++..++++++++||++|.|++++|+
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999988788888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 168 TILLDIYHIISKK 180 (217)
Q Consensus 168 ~l~~~~~~~~~~~ 180 (217)
+|.+.+.+.....
T Consensus 172 ~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 172 TMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhccc
Confidence 9999987765443
No 6
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.4e-36 Score=223.20 Aligned_cols=173 Identities=43% Similarity=0.740 Sum_probs=157.5
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCC
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA 85 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (217)
....+..+||+|+|.+|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567889999999999999999999999999888888888888888888999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 86 VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL 179 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998877668999999999999877777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 166 FQTILLDIYHIIS 178 (217)
Q Consensus 166 ~~~l~~~~~~~~~ 178 (217)
|++|.+.+.+...
T Consensus 180 ~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 180 FLDLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876543
No 7
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.2e-35 Score=219.02 Aligned_cols=175 Identities=52% Similarity=0.844 Sum_probs=155.2
Q ss_pred CCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhh
Q 042687 3 YKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYY 82 (217)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 82 (217)
........+.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++
T Consensus 12 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 91 (191)
T 2a5j_A 12 SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY 91 (191)
T ss_dssp CCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHh
Confidence 34455667889999999999999999999999998888888888888888888999889999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 042687 83 RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNV 162 (217)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 162 (217)
+.+|++|+|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|+
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV 171 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999999998876668999999999999877777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 042687 163 EKAFQTILLDIYHII 177 (217)
Q Consensus 163 ~~~~~~l~~~~~~~~ 177 (217)
+++|++|.+.+.+..
T Consensus 172 ~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 172 EEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 8
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=5e-36 Score=223.47 Aligned_cols=171 Identities=40% Similarity=0.679 Sum_probs=150.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
.++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEecCCCCCCHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHAD----SNIVIMMAGNKSDLNHLRAVAAEDAQILAE-KEGLSFLETSALEALNVE 163 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv~ 163 (217)
|+|||++++.++..+..|+..+..... .++|+++|+||+|+.. +....+++..++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc-cccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999988776543 4789999999999973 5566777888877 667899999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYHIISKK 180 (217)
Q Consensus 164 ~~~~~l~~~~~~~~~~~ 180 (217)
++|++|.+.+.+.....
T Consensus 164 ~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 164 QAFQTIARNALKQETEV 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999987765443
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=4.6e-36 Score=219.55 Aligned_cols=171 Identities=51% Similarity=0.881 Sum_probs=127.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
..++.++|+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 35678999999999999999999999988877777888888888888889988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF 163 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887666899999999999987777778889999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 168 TILLDIYHIIS 178 (217)
Q Consensus 168 ~l~~~~~~~~~ 178 (217)
+|.+.+.+...
T Consensus 164 ~l~~~i~~~~~ 174 (183)
T 2fu5_C 164 TLARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99998876544
No 10
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=8.5e-36 Score=221.67 Aligned_cols=171 Identities=50% Similarity=0.834 Sum_probs=146.8
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCC
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA 85 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (217)
+.+.+..+||+|+|.+|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 44567789999999999999999999999998877888888888888888899889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCHHH
Q 042687 86 VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNVEK 164 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~ 164 (217)
|++|+|||++++++++.+..|+..+......++|++||+||+|+...+.+..+++..++...++ +++++||++|.|+++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999998887766899999999999987777888889999999999 999999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 165 AFQTILLDIYHI 176 (217)
Q Consensus 165 ~~~~l~~~~~~~ 176 (217)
+|++|++.+.+.
T Consensus 183 l~~~l~~~i~~~ 194 (201)
T 2hup_A 183 AFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 11
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=214.19 Aligned_cols=172 Identities=47% Similarity=0.791 Sum_probs=155.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
..++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 45688999999999999999999999999888888888888888888999998999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++++.++..+..|+..+..... ++|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999999999887665 799999999999988777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 168 TILLDIYHIISKK 180 (217)
Q Consensus 168 ~l~~~~~~~~~~~ 180 (217)
+|.+.+.+...+.
T Consensus 164 ~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 164 CITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 9999887765544
No 12
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=3e-35 Score=218.74 Aligned_cols=173 Identities=40% Similarity=0.746 Sum_probs=157.5
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
..++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 45678999999999999999999999999888888888888888888889989999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999998887666899999999999987777778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 168 TILLDIYHIISKK 180 (217)
Q Consensus 168 ~l~~~~~~~~~~~ 180 (217)
+|.+.+.+.....
T Consensus 164 ~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 164 RLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999887765443
No 13
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.7e-35 Score=216.93 Aligned_cols=171 Identities=51% Similarity=0.821 Sum_probs=156.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
..+..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 46788999999999999999999999999988888888888888888889988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+...++..++...+++++++||++|.|++++|+
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999988877666899999999999987677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 168 TILLDIYHIIS 178 (217)
Q Consensus 168 ~l~~~~~~~~~ 178 (217)
+|.+.+.+...
T Consensus 166 ~l~~~~~~~~~ 176 (186)
T 2bme_A 166 QCARKILNKIE 176 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99998876544
No 14
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=216.73 Aligned_cols=174 Identities=63% Similarity=1.015 Sum_probs=157.2
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcC
Q 042687 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (217)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (217)
...+.+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 97 (193)
T 2oil_A 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97 (193)
T ss_dssp --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 34556788999999999999999999999999888888888888888888888899999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 042687 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 164 (217)
+|++|+|||++++.++..+..|+..+......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|+++
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999999998877666899999999999987677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 042687 165 AFQTILLDIYHIIS 178 (217)
Q Consensus 165 ~~~~l~~~~~~~~~ 178 (217)
+|++|.+.+.+...
T Consensus 178 l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 178 AFETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998876543
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=4.8e-35 Score=215.39 Aligned_cols=172 Identities=43% Similarity=0.749 Sum_probs=156.5
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcC
Q 042687 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (217)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (217)
.....++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 94 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG 94 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence 34456678999999999999999999999999888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 042687 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 164 (217)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|+++
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQ 174 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999999999999998887666899999999999987777778889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 165 AFQTILLDIYHI 176 (217)
Q Consensus 165 ~~~~l~~~~~~~ 176 (217)
+|++|.+.+.+.
T Consensus 175 l~~~l~~~i~~~ 186 (189)
T 2gf9_A 175 VFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988664
No 16
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.1e-35 Score=213.38 Aligned_cols=169 Identities=51% Similarity=0.882 Sum_probs=154.1
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCc
Q 042687 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (217)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (217)
...+..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 45667899999999999999999999999988778888888888888888998999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999888776689999999999998777777888999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 042687 167 QTILLDIYH 175 (217)
Q Consensus 167 ~~l~~~~~~ 175 (217)
++|++.+.+
T Consensus 170 ~~l~~~i~~ 178 (179)
T 1z0f_A 170 LEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999987743
No 17
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=5.3e-35 Score=215.45 Aligned_cols=177 Identities=41% Similarity=0.704 Sum_probs=154.5
Q ss_pred CCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeE-EEEEEECCe---------EEEEEEEecCChh
Q 042687 3 YKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFA-TRTLQVEGK---------TVKAQIWDTAGQE 72 (217)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~ 72 (217)
+|...+.+..++|+|+|++|||||||+++|.++.+...+.+|.+.++. ...+.+++. .+.+.+||+||++
T Consensus 2 ~m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 2 SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp ----CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred CCcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 566667788999999999999999999999999888777888887776 556666655 7899999999999
Q ss_pred hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeE
Q 042687 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSF 151 (217)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (217)
.+...+..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..+++..++...++++
T Consensus 82 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (195)
T 3bc1_A 82 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPY 161 (195)
T ss_dssp GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCE
Confidence 9999999999999999999999999999999999998887664 589999999999998777777888999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 042687 152 LETSALEALNVEKAFQTILLDIYHIISK 179 (217)
Q Consensus 152 ~~vSa~~~~gv~~~~~~l~~~~~~~~~~ 179 (217)
+++||+++.|++++|++|.+.+.+...+
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999988765544
No 18
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=219.22 Aligned_cols=173 Identities=50% Similarity=0.803 Sum_probs=145.7
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCC
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA 85 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (217)
....+..+||+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 98 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 98 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC
Confidence 34456789999999999999999999999998888888888888888888899889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 86 VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+...++..++...+++++++||++|.|++++
T Consensus 99 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 99 AGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 178 (200)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988776668999999999999877777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 166 FQTILLDIYHIIS 178 (217)
Q Consensus 166 ~~~l~~~~~~~~~ 178 (217)
|++|++.+.+...
T Consensus 179 ~~~l~~~i~~~~~ 191 (200)
T 2o52_A 179 FLKCARTILNKID 191 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876543
No 19
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=8.2e-35 Score=212.35 Aligned_cols=170 Identities=44% Similarity=0.738 Sum_probs=152.9
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCc
Q 042687 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (217)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (217)
......+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34567799999999999999999999999988888888888888888888988899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999999999988776689999999999998777777888999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 042687 167 QTILLDIYHI 176 (217)
Q Consensus 167 ~~l~~~~~~~ 176 (217)
++|.+.+.+.
T Consensus 167 ~~l~~~~~~~ 176 (181)
T 2efe_B 167 YEIARRLPRV 176 (181)
T ss_dssp HHHHHTCC--
T ss_pred HHHHHHHHhc
Confidence 9999877543
No 20
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=4.2e-35 Score=211.70 Aligned_cols=166 Identities=39% Similarity=0.684 Sum_probs=145.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
.++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46779999999999999999999999998888888888888878888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999887766558999999999999877777888899999999999999999999999999999
Q ss_pred HHHHHH
Q 042687 169 ILLDIY 174 (217)
Q Consensus 169 l~~~~~ 174 (217)
|.+.+.
T Consensus 163 l~~~~~ 168 (170)
T 1z08_A 163 LCKRMI 168 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998774
No 21
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-35 Score=219.32 Aligned_cols=171 Identities=43% Similarity=0.778 Sum_probs=156.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
..++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 45677999999999999999999999998888887888888888888888888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++++++++.+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999988778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 168 TILLDIYHIIS 178 (217)
Q Consensus 168 ~l~~~~~~~~~ 178 (217)
+|++.+.+...
T Consensus 179 ~l~~~i~~~~~ 189 (191)
T 3dz8_A 179 RLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99998876543
No 22
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=8.3e-35 Score=211.74 Aligned_cols=168 Identities=35% Similarity=0.677 Sum_probs=151.7
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCc
Q 042687 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (217)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (217)
..+...++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 88 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 88 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 34446699999999999999999999999988888888888888888889999899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
++|+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766689999999999998777777888889999999999999999999999999
Q ss_pred HHHHHHHH
Q 042687 167 QTILLDIY 174 (217)
Q Consensus 167 ~~l~~~~~ 174 (217)
++|.+.+.
T Consensus 169 ~~l~~~~~ 176 (179)
T 2y8e_A 169 RRVAAALP 176 (179)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHh
Confidence 99988653
No 23
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2e-34 Score=207.91 Aligned_cols=165 Identities=45% Similarity=0.746 Sum_probs=151.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
....++|+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35679999999999999999999999998887888888888888888898899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876668999999999999876777788889999999999999999999999999999
Q ss_pred HHHHH
Q 042687 169 ILLDI 173 (217)
Q Consensus 169 l~~~~ 173 (217)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98754
No 24
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=7e-35 Score=215.15 Aligned_cols=170 Identities=40% Similarity=0.788 Sum_probs=146.9
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCC
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA 85 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (217)
..+.+..+||+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 34566789999999999999999999999988878888888888888888999889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEecCCCCCCHHH
Q 042687 86 VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKE-GLSFLETSALEALNVEK 164 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~ 164 (217)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++... +++++++||++|.|+++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999888877778999999999999877777788888888874 78999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 165 AFQTILLDIYH 175 (217)
Q Consensus 165 ~~~~l~~~~~~ 175 (217)
+|++|.+.+.+
T Consensus 180 l~~~l~~~i~~ 190 (192)
T 2il1_A 180 IFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 25
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=4.9e-34 Score=206.00 Aligned_cols=165 Identities=44% Similarity=0.716 Sum_probs=152.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
..+.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999998888888888888888888899889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
|+|||++++.+++.+..|+..+........|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998876678999999999999877777788899999999999999999999999999999
Q ss_pred HHHHH
Q 042687 169 ILLDI 173 (217)
Q Consensus 169 l~~~~ 173 (217)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98865
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-34 Score=209.06 Aligned_cols=169 Identities=46% Similarity=0.786 Sum_probs=144.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCc
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (217)
..+..++|+|+|++|||||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3567899999999999999999999998885 456678888887777788999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999888776689999999999998777778888899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 042687 167 QTILLDIYHI 176 (217)
Q Consensus 167 ~~l~~~~~~~ 176 (217)
++|.+.+.+.
T Consensus 166 ~~l~~~~~~~ 175 (180)
T 2g6b_A 166 TAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999987543
No 27
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.3e-34 Score=209.11 Aligned_cols=165 Identities=47% Similarity=0.815 Sum_probs=144.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
+.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999887788888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
|||++++.+++.+..|+..+......+.|+++|+||+|+. .+....++...++...+++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999988776689999999999994 355667788899999999999999999999999999999
Q ss_pred HHHHHH
Q 042687 171 LDIYHI 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
+.+.+.
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988654
No 28
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3.5e-34 Score=209.52 Aligned_cols=167 Identities=31% Similarity=0.516 Sum_probs=150.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
...+.+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 345679999999999999999999999988888888877666 6777889999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCC-CCCCHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSAL-EALNVEKA 165 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~-~~~gv~~~ 165 (217)
+|+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++++++||+ ++.|++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 999999999999999999998886643 4589999999999998878888899999999999999999999 99999999
Q ss_pred HHHHHHHHHH
Q 042687 166 FQTILLDIYH 175 (217)
Q Consensus 166 ~~~l~~~~~~ 175 (217)
|++|.+.+.+
T Consensus 173 ~~~l~~~i~~ 182 (183)
T 3kkq_A 173 FHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 29
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-34 Score=213.37 Aligned_cols=169 Identities=43% Similarity=0.706 Sum_probs=152.3
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCC
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA 85 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (217)
.+..+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 34556789999999999999999999999998777888888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 86 VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL 176 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence 99999999999999999999999998877668999999999999876777788899999999999999999999999999
Q ss_pred HHHHHHHHH
Q 042687 166 FQTILLDIY 174 (217)
Q Consensus 166 ~~~l~~~~~ 174 (217)
|++|.+.+.
T Consensus 177 ~~~l~~~i~ 185 (192)
T 2fg5_A 177 FQGISRQIP 185 (192)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHH
Confidence 999988764
No 30
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.5e-34 Score=206.65 Aligned_cols=163 Identities=44% Similarity=0.717 Sum_probs=149.1
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
+.++|+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999999888888888888888888889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccc---cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL---RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
|||++++.++..+..|+..+......+.|+++|+||+|+... +.+..++...++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988877678999999999999664 56777888899999999999999999999999999
Q ss_pred HHHHHH
Q 042687 168 TILLDI 173 (217)
Q Consensus 168 ~l~~~~ 173 (217)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.6e-34 Score=207.04 Aligned_cols=165 Identities=36% Similarity=0.626 Sum_probs=150.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
+..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999999988888888888888888888998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999887766 489999999999998767777888899999999999999999999999999999
Q ss_pred HHHHHH
Q 042687 170 LLDIYH 175 (217)
Q Consensus 170 ~~~~~~ 175 (217)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 987753
No 32
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=3.9e-34 Score=208.50 Aligned_cols=169 Identities=29% Similarity=0.512 Sum_probs=150.0
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCc
Q 042687 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (217)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (217)
.+....++|+|+|.+|||||||+++|.+..+...+.+|.+..+. ..+.+++..+.+.+||+||++.+..++..++..+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 34566799999999999999999999999888777788776654 66778888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRD-HADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
++++|||+++++++..+..|+..+.. ....++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 99999999999999999999988744 34458999999999999877778888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 166 FQTILLDIYHI 176 (217)
Q Consensus 166 ~~~l~~~~~~~ 176 (217)
|++|.+.+.+.
T Consensus 163 ~~~l~~~~~~~ 173 (181)
T 2fn4_A 163 FEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 33
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=9.1e-35 Score=216.61 Aligned_cols=178 Identities=28% Similarity=0.452 Sum_probs=119.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC--ccccCCCCCcceeeEEEEEEECCe--EEEEEEEecCChhhhccchhhhhcCC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN--EFCLESKSTIGVEFATRTLQVEGK--TVKAQIWDTAGQERYRAITSAYYRGA 85 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (217)
...++|+|+|++|||||||+++|.+. .+...+.+|.+.++....+.+++. .+.+.+||+||++.+...+..++..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46699999999999999999999998 777777788777777777888876 88999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEeCCCCcc-ccccCHHHHHHHHHHcCCeEEEecCCC-CC
Q 042687 86 VGALLVYDITKRQTFDNVTRWLRELRDHAD---SNIVIMMAGNKSDLNH-LRAVAAEDAQILAEKEGLSFLETSALE-AL 160 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~vSa~~-~~ 160 (217)
|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.. .+.+..+++..++..++++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 6899999999999987 677778899999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042687 161 NVEKAFQTILLDIYHIISKKALAAQEA 187 (217)
Q Consensus 161 gv~~~~~~l~~~~~~~~~~~~~~~~~~ 187 (217)
|++++|++|.+.+.+...+........
T Consensus 178 gi~~l~~~i~~~~~~~~~~~~~~~~~~ 204 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYEDKVAAFQDA 204 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999988777666555443
No 34
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.4e-33 Score=207.02 Aligned_cols=168 Identities=32% Similarity=0.537 Sum_probs=144.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...+||+|+|++|||||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+..++..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3569999999999999999999999988777777754 444566778899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. +....++...++...+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999887754 35899999999999974 556678889999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 169 ILLDIYHIISK 179 (217)
Q Consensus 169 l~~~~~~~~~~ 179 (217)
|.+.+.+...+
T Consensus 160 l~~~~~~~~~~ 170 (189)
T 4dsu_A 160 LVREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99988765433
No 35
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.5e-34 Score=215.18 Aligned_cols=174 Identities=42% Similarity=0.715 Sum_probs=151.1
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCe----------EEEEEEEecCChhhh
Q 042687 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK----------TVKAQIWDTAGQERY 74 (217)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~ 74 (217)
.....+..+||+|+|.+|||||||+++|.+..+...+.+|.+.++....+.+++. .+.+.+||+||++.+
T Consensus 18 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 97 (217)
T 2f7s_A 18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF 97 (217)
T ss_dssp ---CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH
T ss_pred cCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH
Confidence 3445678899999999999999999999999887777777777777777777665 788999999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEE
Q 042687 75 RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLE 153 (217)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (217)
...+..++..+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..+++..++...++++++
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFE 177 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEE
Confidence 99999999999999999999999999999999887766543 58999999999999877777788899999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLDIYHIIS 178 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~~~~~~~ 178 (217)
+||+++.|++++|++|.+.+.+...
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998876543
No 36
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=4.7e-34 Score=208.48 Aligned_cols=166 Identities=32% Similarity=0.473 Sum_probs=149.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4679999999999999999999999888888888877666 677788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
+|||++++++++.+..|+..+.... ..++|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998886654 347999999999999887888889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 042687 169 ILLDIYHI 176 (217)
Q Consensus 169 l~~~~~~~ 176 (217)
|++.+.+.
T Consensus 163 l~~~~~~~ 170 (181)
T 3t5g_A 163 IILEAEKM 170 (181)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99987553
No 37
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.3e-34 Score=209.39 Aligned_cols=167 Identities=32% Similarity=0.534 Sum_probs=147.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECC-eEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG-KTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
....++|+|+|++|||||||+++|.++.+...+.+|.+.++....+.+++ ..+.+.+||+||++.+...+..++.++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34669999999999999999999999988777778887788888888876 67899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHA---DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 164 (217)
+|+|||++++++++.+..|+..+.... ....|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999998887643 22344899999999987677778889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 165 AFQTILLDIYH 175 (217)
Q Consensus 165 ~~~~l~~~~~~ 175 (217)
+|++|.+.+.+
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 38
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=212.23 Aligned_cols=168 Identities=26% Similarity=0.357 Sum_probs=143.2
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc-chhhhhcCCc
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-ITSAYYRGAV 86 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d 86 (217)
+.+..+||+|+|.+|||||||+++|.+......+.++.+.+.....+.+++..+.+.+||++|++.+.. ++..++..+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 445779999999999999999999986554434445555666677788899999999999999987664 6778889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
++|+|||++++++++.+..|+..+..... .++|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999998877653 47999999999999877777888899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 042687 166 FQTILLDIYH 175 (217)
Q Consensus 166 ~~~l~~~~~~ 175 (217)
|++|++.+.+
T Consensus 179 f~~l~~~i~~ 188 (195)
T 3cbq_A 179 FEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 39
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=213.94 Aligned_cols=168 Identities=39% Similarity=0.642 Sum_probs=138.5
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCc
Q 042687 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (217)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (217)
...+..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 34456799999999999999999999999887777788888888888889999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc------cccccCHHHHHHHHHHcCCeEEEecCCCCC
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN------HLRAVAAEDAQILAEKEGLSFLETSALEAL 160 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 160 (217)
++|+|||++++.+++.+..|+..+......++|+++|+||+|+. ..+.+..+++..++...+++++++||++|.
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 99999999999999999999999888766689999999999996 345667788889999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDIY 174 (217)
Q Consensus 161 gv~~~~~~l~~~~~ 174 (217)
|++++|.+|++.+.
T Consensus 183 gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 183 NIVEAVLHLAREVK 196 (199)
T ss_dssp THHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998774
No 40
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=9.1e-34 Score=208.54 Aligned_cols=166 Identities=36% Similarity=0.661 Sum_probs=147.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc-cchhhhhcCCcE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR-AITSAYYRGAVG 87 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~ 87 (217)
....+||+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3456999999999999999999999999888888888888888888899988999999999999888 888999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCC---CCHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEA---LNVE 163 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~---~gv~ 163 (217)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+++ .|++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999987765 458999999999999877777888899999999999999999999 9999
Q ss_pred HHHHHHHHHHH
Q 042687 164 KAFQTILLDIY 174 (217)
Q Consensus 164 ~~~~~l~~~~~ 174 (217)
++|.+|++.+.
T Consensus 177 ~l~~~l~~~i~ 187 (189)
T 1z06_A 177 AIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 41
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=204.51 Aligned_cols=167 Identities=28% Similarity=0.410 Sum_probs=135.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh--hccchhhhhcCCcE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER--YRAITSAYYRGAVG 87 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 87 (217)
.+.+||+|+|++|||||||+++|.+..+...+. +.+.+.....+.+++..+.+.+||+||++. +..+...++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 356999999999999999999999988765443 456666677788899989999999999887 56667788899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 3479999999999998777777888888999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 167 QTILLDIYHII 177 (217)
Q Consensus 167 ~~l~~~~~~~~ 177 (217)
++|.+.+.+..
T Consensus 161 ~~l~~~~~~~~ 171 (175)
T 2nzj_A 161 EGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999886543
No 42
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.2e-33 Score=204.01 Aligned_cols=166 Identities=39% Similarity=0.699 Sum_probs=145.8
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45679999999999999999999999998888888888888888888999989999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCCCCccccccCHHHHHHHHH-HcCCeEEEecCCCCCCHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHAD----SNIVIMMAGNKSDLNHLRAVAAEDAQILAE-KEGLSFLETSALEALNVE 163 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv~ 163 (217)
++|||++++.+++.+..|+..+..... .++|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999998876653 588999999999997 35667778888887 567899999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYH 175 (217)
Q Consensus 164 ~~~~~l~~~~~~ 175 (217)
++|++|++.+.+
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 43
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-33 Score=210.17 Aligned_cols=169 Identities=46% Similarity=0.825 Sum_probs=150.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
+.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34567999999999999999999999999888888888888888888899988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+. .+.+..++...++..++++++++||+++.|++++|+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999888776689999999999994 356667788889999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 042687 168 TILLDIYHII 177 (217)
Q Consensus 168 ~l~~~~~~~~ 177 (217)
+|.+.+.+..
T Consensus 175 ~l~~~~~~~~ 184 (213)
T 3cph_A 175 TLAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999886553
No 44
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=9.9e-34 Score=204.39 Aligned_cols=164 Identities=26% Similarity=0.363 Sum_probs=133.6
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc-chhhhhcCCcEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGALL 90 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ii~ 90 (217)
.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+.. ++..++..+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998877766666666777778888999999999999999988776 67778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877654 479999999999998778888899999999999999999999999999999999
Q ss_pred HHHHHH
Q 042687 170 LLDIYH 175 (217)
Q Consensus 170 ~~~~~~ 175 (217)
++.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 45
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.3e-33 Score=205.72 Aligned_cols=163 Identities=19% Similarity=0.353 Sum_probs=142.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
.....+||+|+|.+|||||||+++|+++.+...+.+| ... ....+.+++..+.+.+|||+|++.+. ++..+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGR-FKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEE-EEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cce-EEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 4456799999999999999999999999988777776 333 34778889999999999999998776 7788999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCc--cccccCHHHHHHHHHHcC-CeEEEecCCCCCCHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLN--HLRAVAAEDAQILAEKEG-LSFLETSALEALNVE 163 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~ 163 (217)
+++|||++++.+++.+..|+..+..... .++|+++|+||+|+. ..+.+..+++..++...+ ++++++||++|.|++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 9999999999999999999999887653 479999999999994 456778889999999987 899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYHII 177 (217)
Q Consensus 164 ~~~~~l~~~~~~~~ 177 (217)
++|++|++.+.+..
T Consensus 169 ~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 169 RVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 46
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=9.3e-34 Score=208.32 Aligned_cols=164 Identities=27% Similarity=0.416 Sum_probs=142.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
....+||+|+|.+|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..+ ..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34669999999999999999999999998888888877655 455678888999999999999988774 6789999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecC-CCCCCHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHA---DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSA-LEALNVEK 164 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa-~~~~gv~~ 164 (217)
|+|||++++++++.+..|+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++|| ++|.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 99999999999999999999887764 248999999999999877778888999999999999999999 89999999
Q ss_pred HHHHHHHHHH
Q 042687 165 AFQTILLDIY 174 (217)
Q Consensus 165 ~~~~l~~~~~ 174 (217)
+|++|++.+.
T Consensus 176 lf~~l~~~i~ 185 (187)
T 3c5c_A 176 VFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 47
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-33 Score=207.24 Aligned_cols=170 Identities=26% Similarity=0.457 Sum_probs=148.0
Q ss_pred CCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhh
Q 042687 3 YKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYY 82 (217)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 82 (217)
.|...+....++|+|+|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..++
T Consensus 9 ~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 87 (194)
T 2atx_A 9 SMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87 (194)
T ss_dssp CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred ccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhc
Confidence 34445556789999999999999999999999988777777776554 45567788888999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC
Q 042687 83 RGAVGALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEGL 149 (217)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~ 149 (217)
.++|++|+|||+++++++..+. .|+..+..... ++|+++|+||+|+... +.+..+++..++...++
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 166 (194)
T 2atx_A 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA 166 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence 9999999999999999999986 79988887655 8999999999999653 35677888999999997
Q ss_pred -eEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 150 -SFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 150 -~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
+++++||++|.|++++|++|++.++
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999998775
No 48
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=8.2e-34 Score=212.93 Aligned_cols=167 Identities=25% Similarity=0.420 Sum_probs=145.2
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
....+||+|+|.+|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..++.++|++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 34679999999999999999999999999888888877665 45566788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHH-HHHHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEe
Q 042687 89 LLVYDITKRQTFDN-VTRWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEGL-SFLET 154 (217)
Q Consensus 89 i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~v 154 (217)
|+|||++++++++. +..|+..+..... ++|+++|+||+|+... +.+..+++..++..+++ +++++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 181 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 181 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence 99999999999999 6899999888764 8999999999999753 56788899999999999 99999
Q ss_pred cCCCCCC-HHHHHHHHHHHHHHHH
Q 042687 155 SALEALN-VEKAFQTILLDIYHII 177 (217)
Q Consensus 155 Sa~~~~g-v~~~~~~l~~~~~~~~ 177 (217)
||++|.| ++++|++|++.+.+..
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHC--
T ss_pred ccCCCcccHHHHHHHHHHHHhccC
Confidence 9999998 9999999999886543
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-33 Score=205.35 Aligned_cols=167 Identities=44% Similarity=0.739 Sum_probs=150.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
.....++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34567999999999999999999999999888888888888888888899999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
+|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+++..++...+++++++||+++.|++++|
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 999999999999999999999887765 24799999999999954 5566778889999999999999999999999999
Q ss_pred HHHHHHHHH
Q 042687 167 QTILLDIYH 175 (217)
Q Consensus 167 ~~l~~~~~~ 175 (217)
++|.+.+.+
T Consensus 170 ~~l~~~~~~ 178 (195)
T 1x3s_A 170 EELVEKIIQ 178 (195)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998854
No 50
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-33 Score=209.65 Aligned_cols=163 Identities=26% Similarity=0.411 Sum_probs=141.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+|+|.+|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++..+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 3459999999999999999999999988777777766444 345567888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|||++++.+++.+..|+..+..... .++|+++|+||+|+.. +.+..++...++..++++++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999998888877766542 3789999999999975 55667788889999999999999999999999999
Q ss_pred HHHHHHH
Q 042687 168 TILLDIY 174 (217)
Q Consensus 168 ~l~~~~~ 174 (217)
+|++.+.
T Consensus 164 ~l~~~~~ 170 (199)
T 2gf0_A 164 ELLTLET 170 (199)
T ss_dssp HHHHHCS
T ss_pred HHHHHHh
Confidence 9988663
No 51
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=207.92 Aligned_cols=170 Identities=29% Similarity=0.490 Sum_probs=139.3
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
.....++|+|+|.+|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345679999999999999999999999888777777766444 4567788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCcc------------ccccCHHHHHHHHHHcCC-eEEE
Q 042687 88 ALLVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNH------------LRAVAAEDAQILAEKEGL-SFLE 153 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 153 (217)
+|+|||+++++++..+. .|+..+..... ++|+++|+||+|+.. .+.+..+++..++...++ ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999986 79988887665 899999999999965 245667788899988887 9999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLDIYHIISK 179 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~~~~~~~~ 179 (217)
+||++|.|++++|++|++.+.+...+
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHHhccccc
Confidence 99999999999999999988766543
No 52
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=5.9e-34 Score=213.20 Aligned_cols=168 Identities=30% Similarity=0.534 Sum_probs=143.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+|+|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..++.++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3569999999999999999999999998777777876554 455667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccccc--------cCHHHHHHHHHHcCC-eEEEecCCCC
Q 042687 90 LVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLRA--------VAAEDAQILAEKEGL-SFLETSALEA 159 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~vSa~~~ 159 (217)
+|||++++++++.+. .|+..+....+ ++|++||+||+|+...+. +..+++..++..+++ +++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999986 89998887765 899999999999966443 367788889999986 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLDIYHIISK 179 (217)
Q Consensus 160 ~gv~~~~~~l~~~~~~~~~~ 179 (217)
.|++++|++|++.+.+...+
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp TTHHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHHhhhhhh
Confidence 99999999999988765443
No 53
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.4e-33 Score=205.71 Aligned_cols=168 Identities=36% Similarity=0.665 Sum_probs=134.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC-CeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4567999999999999999999999999888888888878877777776 566789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCeEEEEEeCCCCcc-ccccCHHHHHHHHH-HcCCeEEEecCCCCCC
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHAD----SNIVIMMAGNKSDLNH-LRAVAAEDAQILAE-KEGLSFLETSALEALN 161 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~g 161 (217)
+|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.. .+.+..+++..++. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988876653 5899999999999954 34566778888887 5678999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIYHI 176 (217)
Q Consensus 162 v~~~~~~l~~~~~~~ 176 (217)
++++|++|.+.+.+.
T Consensus 165 i~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 165 VDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988654
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=7.8e-33 Score=205.42 Aligned_cols=164 Identities=37% Similarity=0.637 Sum_probs=145.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeE-----------------------------
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT----------------------------- 60 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~----------------------------- 60 (217)
++.++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 456999999999999999999999999888888888888877777777655
Q ss_pred --------EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccc
Q 042687 61 --------VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (217)
Q Consensus 61 --------~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 132 (217)
+.+.+||+||++.+...+..++..+|++|+|||++++.++..+..|+..+.... +.|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-ccc
Confidence 789999999999999999999999999999999999999999999999887765 499999999999 444
Q ss_pred cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 042687 133 RAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~~~~~ 176 (217)
+.+..+++..++...+++++++||++|.|++++|++|.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 66778889999999999999999999999999999999988654
No 55
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=6.3e-33 Score=204.85 Aligned_cols=165 Identities=27% Similarity=0.490 Sum_probs=146.4
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
....+||+|+|.+|||||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 456799999999999999999999999988777788766654 4567888999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCccc--cccCHHHHHHHHHHcCCe-EEEecCCCCCCHHH
Q 042687 89 LLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHL--RAVAAEDAQILAEKEGLS-FLETSALEALNVEK 164 (217)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~vSa~~~~gv~~ 164 (217)
|+|||++++++++.+ ..|+..+..... ++|+++|+||+|+... +.+..+++..++...+++ ++++||++|.|+++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 999999999999997 788888876654 7999999999999653 567788899999999988 99999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 165 AFQTILLDIYH 175 (217)
Q Consensus 165 ~~~~l~~~~~~ 175 (217)
+|++|++.+.+
T Consensus 178 l~~~l~~~i~~ 188 (194)
T 3reg_A 178 VFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 56
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=9e-34 Score=210.61 Aligned_cols=167 Identities=26% Similarity=0.455 Sum_probs=143.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
....+||+|+|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34679999999999999999999999999888878876665 55566677778899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
|+|||++++++++.+..|+..+.... ..++|+++|+||+|+...+.+...++..++...+++++++||++|.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999887654 34789999999999988788888899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 042687 168 TILLDIYHI 176 (217)
Q Consensus 168 ~l~~~~~~~ 176 (217)
+|.+.+.+.
T Consensus 180 ~l~~~i~~~ 188 (201)
T 3oes_A 180 KVIQEIARV 188 (201)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999988654
No 57
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=8.3e-33 Score=201.33 Aligned_cols=163 Identities=21% Similarity=0.388 Sum_probs=137.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
+.+||+|+|++|||||||+++|.++.+.. +.+|.+..+ ...+.+++..+.+.+|||||++. ..+++++|++|+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 56999999999999999999999998876 667766443 56677889899999999999875 457888999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc---CCCCeEEEEEeCCCCc--cccccCHHHHHHHHHHc-CCeEEEecCCCCCCHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA---DSNIVIMMAGNKSDLN--HLRAVAAEDAQILAEKE-GLSFLETSALEALNVEK 164 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~ 164 (217)
|||++++++++.+..|+..+.... ..++|+++|+||+|+. ..+.+..+++..++... +++++++||++|.|+++
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR 158 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence 999999999999998766655443 3589999999999994 44667788888888876 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 042687 165 AFQTILLDIYHIISKK 180 (217)
Q Consensus 165 ~~~~l~~~~~~~~~~~ 180 (217)
+|++|++.+.+.....
T Consensus 159 lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 159 VFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999987765443
No 58
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.4e-33 Score=208.20 Aligned_cols=167 Identities=28% Similarity=0.390 Sum_probs=138.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCcc--ccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh-hccchhhhhcC
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEF--CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-YRAITSAYYRG 84 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~ 84 (217)
+....+||+|+|.+|||||||+++|.+... ...+ ++++.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 345679999999999999999999996543 2332 3456666677788899999999999999876 55566778899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 042687 85 AVGALLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 163 (217)
+|++|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988876642 3479999999999998767777788888888999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYH 175 (217)
Q Consensus 164 ~~~~~l~~~~~~ 175 (217)
++|++|++.+..
T Consensus 192 elf~~l~~~i~~ 203 (211)
T 2g3y_A 192 ELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997743
No 59
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=4.5e-33 Score=200.33 Aligned_cols=163 Identities=33% Similarity=0.561 Sum_probs=142.6
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
+.+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 358999999999999999999999988777777766544 4556788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
|||+++++++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999998877654 479999999999998777778888999999999999999999999999999999
Q ss_pred HHHHH
Q 042687 170 LLDIY 174 (217)
Q Consensus 170 ~~~~~ 174 (217)
.+.+.
T Consensus 162 ~~~i~ 166 (168)
T 1u8z_A 162 MREIR 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98774
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-33 Score=206.25 Aligned_cols=166 Identities=30% Similarity=0.468 Sum_probs=145.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
....+||+|+|.+|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++. ...+..++..+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 34669999999999999999999999998877778776554 45567888889999999999887 77788899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCC-CHHHHH
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEAL-NVEKAF 166 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-gv~~~~ 166 (217)
|+|||++++++++.+..|+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||++|. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999998887754 3589999999999998777788888999999999999999999999 999999
Q ss_pred HHHHHHHHHH
Q 042687 167 QTILLDIYHI 176 (217)
Q Consensus 167 ~~l~~~~~~~ 176 (217)
++|++.+.+.
T Consensus 183 ~~l~~~i~~~ 192 (196)
T 2atv_A 183 YELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=8.9e-33 Score=202.32 Aligned_cols=166 Identities=33% Similarity=0.538 Sum_probs=147.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 3569999999999999999999999988777777766544 455678888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
+|||+++++++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|++++|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999988877654 47999999999999877777888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 042687 169 ILLDIYHI 176 (217)
Q Consensus 169 l~~~~~~~ 176 (217)
|.+.+.+.
T Consensus 175 l~~~i~~~ 182 (187)
T 2a9k_A 175 LMREIRAR 182 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988654
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4.6e-33 Score=200.06 Aligned_cols=162 Identities=28% Similarity=0.484 Sum_probs=144.4
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.++|+|+|++|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+..++..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 4899999999999999999999998877777776543 366677888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+...+...++...+++++++||++|.|++++|++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 99999999999999988877654 35899999999999987777788888999999999999999999999999999999
Q ss_pred HHHH
Q 042687 171 LDIY 174 (217)
Q Consensus 171 ~~~~ 174 (217)
+.+.
T Consensus 162 ~~~~ 165 (167)
T 1kao_A 162 RQMN 165 (167)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8774
No 63
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=3.7e-33 Score=200.78 Aligned_cols=161 Identities=30% Similarity=0.521 Sum_probs=142.9
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999988777777776554 35566788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHc-CCeEEEecCCCCCCHHHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKE-GLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~~~~~l 169 (217)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++... +++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 99999999999999988877653 358999999999999877777788888998887 7899999999999999999999
Q ss_pred HHHH
Q 042687 170 LLDI 173 (217)
Q Consensus 170 ~~~~ 173 (217)
.+.+
T Consensus 162 ~~~i 165 (167)
T 1c1y_A 162 VRQI 165 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 64
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=5.7e-33 Score=199.83 Aligned_cols=163 Identities=26% Similarity=0.400 Sum_probs=122.9
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.+||+|+|++|||||||+++|.+...... .++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999987665433 33444444 45667889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998887653 35899999999999988788888899999999999999999999999999999999
Q ss_pred HHHHHH
Q 042687 171 LDIYHI 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
+.+.+.
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 987653
No 65
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-33 Score=207.44 Aligned_cols=168 Identities=26% Similarity=0.497 Sum_probs=143.2
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCC
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA 85 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 85 (217)
+...+..+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..++..++..+
T Consensus 22 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 100 (205)
T 1gwn_A 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100 (205)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence 33456779999999999999999999999998877778876555 44566788888999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeE
Q 042687 86 VGALLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEG-LSF 151 (217)
Q Consensus 86 d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~ 151 (217)
|++|+|||++++++++.+ ..|+..+..... +.|+++|+||+|+... +.+..+++..++..++ +++
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 179 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEE
Confidence 999999999999999998 789888877654 7999999999999642 4567788899998887 699
Q ss_pred EEecCC-CCCCHHHHHHHHHHHHHH
Q 042687 152 LETSAL-EALNVEKAFQTILLDIYH 175 (217)
Q Consensus 152 ~~vSa~-~~~gv~~~~~~l~~~~~~ 175 (217)
+++||+ ++.|++++|++|++.+++
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhh
Confidence 999999 689999999999998764
No 66
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=5.3e-33 Score=208.49 Aligned_cols=166 Identities=33% Similarity=0.511 Sum_probs=124.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...+||+|+|.+|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3569999999999999999999999888777777765444 456678888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCcccc------------ccCHHHHHHHHHHcCC-eEEEec
Q 042687 90 LVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLR------------AVAAEDAQILAEKEGL-SFLETS 155 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~vS 155 (217)
+|||++++.+++.+. .|+..+..... ++|+++|+||+|+.... .+..+++..++...++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 79888877654 79999999999996542 5667788899999997 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 042687 156 ALEALNVEKAFQTILLDIYHII 177 (217)
Q Consensus 156 a~~~~gv~~~~~~l~~~~~~~~ 177 (217)
|++|.|++++|++|++.+.+..
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887543
No 67
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=8.1e-33 Score=202.67 Aligned_cols=165 Identities=26% Similarity=0.497 Sum_probs=142.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
.+..+||+|+|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 35679999999999999999999999988877777776555 44567788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcC-CeEEEe
Q 042687 89 LLVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEG-LSFLET 154 (217)
Q Consensus 89 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~v 154 (217)
|+|||++++++++.+ ..|+..+..... +.|+++|+||+|+... +.+..+++..++..++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 789888877654 8999999999999642 4567788899998887 699999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHH
Q 042687 155 SAL-EALNVEKAFQTILLDIYH 175 (217)
Q Consensus 155 Sa~-~~~gv~~~~~~l~~~~~~ 175 (217)
||+ ++.|++++|++|++.+++
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999987753
No 68
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=220.27 Aligned_cols=168 Identities=51% Similarity=0.864 Sum_probs=142.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
..+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 45678999999999999999999999988887777888888888888899999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+...++..++..++++++++||++|.|++++|+
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999987666666678888999999999999999999999999
Q ss_pred HHHHHHHH
Q 042687 168 TILLDIYH 175 (217)
Q Consensus 168 ~l~~~~~~ 175 (217)
+|.+.+.+
T Consensus 189 ~l~~~l~~ 196 (199)
T 3l0i_B 189 TMAAEIKK 196 (199)
T ss_dssp HHTTTTTT
T ss_pred HHHHHHHH
Confidence 99886643
No 69
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=8.9e-34 Score=209.48 Aligned_cols=174 Identities=22% Similarity=0.261 Sum_probs=139.7
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCC-----------CCCcceeeEEEEE-EECCeEEEEEEEec
Q 042687 1 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLES-----------KSTIGVEFATRTL-QVEGKTVKAQIWDT 68 (217)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~-----------~~t~~~~~~~~~~-~~~~~~~~~~i~D~ 68 (217)
|+.+.....+..+||+|+|++|||||||++.+.+ .+...+ .+|.+.++....+ .+++..+.+.+|||
T Consensus 3 m~~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV 81 (198)
T ss_dssp -CEEETTTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred ccccchhccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeC
Confidence 4555666778899999999999999999976655 443332 2343334333333 45677889999999
Q ss_pred CChhhhccchhhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHH
Q 042687 69 AGQERYRAITSAYYRGAVGALLVYDIT------KRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQI 142 (217)
Q Consensus 69 ~G~~~~~~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 142 (217)
||++.+...+..+++++|++|+|||++ +.+++..+..|+..+.. ...++|+++|+||+|+.+. +..+++..
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~~~~ 158 (198)
T 3t1o_A 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA--LPVEMVRA 158 (198)
T ss_dssp CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC--CCHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc--cCHHHHHH
Confidence 999999999999999999999999999 55677778888877733 3348999999999999753 66788999
Q ss_pred HHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHHHH
Q 042687 143 LAEKEGL-SFLETSALEALNVEKAFQTILLDIYHIIS 178 (217)
Q Consensus 143 ~~~~~~~-~~~~vSa~~~~gv~~~~~~l~~~~~~~~~ 178 (217)
++...++ +++++||++|.|++++|++|.+.+.+...
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 159 VVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp HHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 9999999 99999999999999999999998877644
No 70
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=3.1e-33 Score=210.66 Aligned_cols=172 Identities=32% Similarity=0.565 Sum_probs=151.0
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhh
Q 042687 1 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 80 (217)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (217)
|..+........+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..
T Consensus 4 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 83 (221)
T 3gj0_A 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 83 (221)
T ss_dssp --CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHH
T ss_pred cccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHH
Confidence 44556667778899999999999999999998888877777788888888888889999999999999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCC
Q 042687 81 YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEAL 160 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 160 (217)
++.++|++|+|||++++.++..+..|+..+..... ++|+++|+||+|+.+... . .+...++...+++++++||++|.
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNY 160 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTB
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999999999988765 899999999999976332 2 25566788889999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDIYH 175 (217)
Q Consensus 161 gv~~~~~~l~~~~~~ 175 (217)
|++++|.+|.+.+..
T Consensus 161 gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 161 NFEKPFLWLARKLIG 175 (221)
T ss_dssp TTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 71
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=4.5e-32 Score=201.45 Aligned_cols=164 Identities=27% Similarity=0.482 Sum_probs=144.2
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...+||+|+|.+|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 46799999999999999999999999988777788776664 34678888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEec
Q 042687 90 LVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEGL-SFLETS 155 (217)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~vS 155 (217)
+|||++++++++.+ ..|+..+..... +.|+++|+||+|+... +.+..+++..++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 688888877654 8999999999999654 34667788889999888 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 042687 156 ALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 156 a~~~~gv~~~~~~l~~~~~~ 175 (217)
|++|.|++++|++|.+.+++
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987753
No 72
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.1e-31 Score=197.42 Aligned_cols=165 Identities=33% Similarity=0.554 Sum_probs=134.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..++|+|+|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 568999999999999999999999888777666655443 4566788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
|||++++.++..+..|+..+..... .++|+++|+||+|+.. +....+++..++...+++++++||+++.|++++|++|
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988877653 4799999999999976 5566788899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 042687 170 LLDIYHII 177 (217)
Q Consensus 170 ~~~~~~~~ 177 (217)
.+.+.+..
T Consensus 178 ~~~~~~~~ 185 (190)
T 3con_A 178 VREIRQYR 185 (190)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99886643
No 73
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=7e-32 Score=197.48 Aligned_cols=163 Identities=29% Similarity=0.514 Sum_probs=142.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..++|+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 469999999999999999999999988777777765444 4566788999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEecC
Q 042687 91 VYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEGL-SFLETSA 156 (217)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~vSa 156 (217)
|||++++.++..+. .|+..+..... +.|+++|+||+|+... +.+..++...++...++ +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999986 78888887665 8999999999998653 35667788889998887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 042687 157 LEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 157 ~~~~gv~~~~~~l~~~~~~ 175 (217)
++|.|++++|++|.+.+.+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHhc
Confidence 9999999999999987743
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.1e-32 Score=207.09 Aligned_cols=168 Identities=29% Similarity=0.496 Sum_probs=144.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC-CeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
....+||+|+|.+|||||||+++|.++.+...+.++.+.......+... +..+.+.+|||||++.+...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4567999999999999999999999988877777777776666665554 444789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999999999888777799999999999987777788888889989999999999999999999999
Q ss_pred HHHHHHHHH
Q 042687 168 TILLDIYHI 176 (217)
Q Consensus 168 ~l~~~~~~~ 176 (217)
+|.+.+.+.
T Consensus 168 ~l~~~~~~~ 176 (218)
T 4djt_A 168 HLARIFTGR 176 (218)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhcc
Confidence 999987553
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-32 Score=196.53 Aligned_cols=162 Identities=28% Similarity=0.412 Sum_probs=141.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..++|+|+|++|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 358999999999999999999999888777777765444 3445678888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~ 168 (217)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+...+...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999888888776542 37999999999999877777778888899999999999999999999999999
Q ss_pred HHHHH
Q 042687 169 ILLDI 173 (217)
Q Consensus 169 l~~~~ 173 (217)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98755
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=1.1e-31 Score=198.06 Aligned_cols=167 Identities=28% Similarity=0.398 Sum_probs=136.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCc--cccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh-hccchhhhhcCCc
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNE--FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-YRAITSAYYRGAV 86 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 86 (217)
.+.+||+|+|.+|||||||+++|++.. +...+ ++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 356999999999999999999999643 33333 3355666667788899999999999999775 5566777889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKA 165 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~ 165 (217)
++|+|||++++++++.+..|+..+.... ..++|+++|+||+|+...+.+...+...++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988777653 347999999999999776677777888888888999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 166 FQTILLDIYHII 177 (217)
Q Consensus 166 ~~~l~~~~~~~~ 177 (217)
|++|++.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886543
No 77
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=2e-31 Score=191.18 Aligned_cols=161 Identities=34% Similarity=0.591 Sum_probs=141.6
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.++|+++|++|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 48999999999999999999999888777766655433 55667788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
||++++.++..+..|+..+..... .+.|+++|+||+|+.. +....++...++...+++++++||++|.|++++|++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988877653 4799999999999876 55667788899999999999999999999999999999
Q ss_pred HHHH
Q 042687 171 LDIY 174 (217)
Q Consensus 171 ~~~~ 174 (217)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-31 Score=199.54 Aligned_cols=164 Identities=27% Similarity=0.482 Sum_probs=137.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...+||+|+|.+|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..++..+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 35689999999999999999999999988777777665554 34678888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEec
Q 042687 90 LVYDITKRQTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEGL-SFLETS 155 (217)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~vS 155 (217)
+|||++++++++.+ ..|+..+..... ++|+++|+||+|+... +.+..++...++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 788888877654 8999999999999654 34667778888888887 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 042687 156 ALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 156 a~~~~gv~~~~~~l~~~~~~ 175 (217)
|++|.|++++|++|.+.+.+
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.2e-32 Score=201.06 Aligned_cols=162 Identities=30% Similarity=0.532 Sum_probs=126.5
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..+||+|+|++|||||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4599999999999999999999998887777676654432 234456677888999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccccc----------cCHHHHHHHHHHcCC-eEEEecCCC
Q 042687 91 VYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLRA----------VAAEDAQILAEKEGL-SFLETSALE 158 (217)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~vSa~~ 158 (217)
|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+.+. +..+++..++...+. +++++||++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 99999999999986 79888887655 899999999999865443 366788889998896 999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDIY 174 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~~ 174 (217)
|.|++++|++|.+.++
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998763
No 80
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=5.6e-31 Score=195.24 Aligned_cols=168 Identities=77% Similarity=1.191 Sum_probs=149.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 56799999999999999999999999988888888888888888889999999999999999999988999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTI 169 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l 169 (217)
+|||+++..+++.+..|+..+......+.|+++++||+|+.+.+.....++..++...++.++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999988889888776655578999999999998767777788889999999999999999999999999999
Q ss_pred HHHHHHHH
Q 042687 170 LLDIYHII 177 (217)
Q Consensus 170 ~~~~~~~~ 177 (217)
.+.+.+..
T Consensus 163 ~~~~~~~~ 170 (199)
T 2f9l_A 163 LTEIYRIV 170 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.1e-31 Score=198.66 Aligned_cols=166 Identities=16% Similarity=0.280 Sum_probs=129.2
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCcccc-CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcC
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (217)
..+..+.++|+|+|.+|||||||+++|.+..+.. .+.+|.+... ..+... .+.+.+|||||++.+..++..+++.
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG--RVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC--CEEEEEEECCCCHhHHHHHHHHHhc
Confidence 4456678999999999999999999999999887 6777776433 333333 4678899999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--------CCCeEEEEEeCCCCccccccCHHHHH------HHHHHcCCe
Q 042687 85 AVGALLVYDITKRQTFDNVTRWLRELRDHAD--------SNIVIMMAGNKSDLNHLRAVAAEDAQ------ILAEKEGLS 150 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~ 150 (217)
+|++|+|||+++++++..+..|+..+..... .++|+++|+||+|+..... ..++. .++...+++
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~ 164 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFV 164 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeE
Confidence 9999999999999999999888888765421 2789999999999976422 12211 122446789
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHH
Q 042687 151 FLETSALEALNVEKAFQTILLDIYHII 177 (217)
Q Consensus 151 ~~~vSa~~~~gv~~~~~~l~~~~~~~~ 177 (217)
++++||++|.|++++|++|.+.+.+..
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887654
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.98 E-value=2.1e-31 Score=198.40 Aligned_cols=162 Identities=29% Similarity=0.499 Sum_probs=138.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...+||+|+|.+|||||||+++|.++.+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..++..+|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4569999999999999999999999988777777764 444566677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccccc------------cCHHHHHHHHHHcCC-eEEEec
Q 042687 90 LVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLRA------------VAAEDAQILAEKEGL-SFLETS 155 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~-~~~~vS 155 (217)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+..... +..+++..++...++ +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999996 8888887776 4899999999999865432 667788889998886 699999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 042687 156 ALEALNVEKAFQTILLDI 173 (217)
Q Consensus 156 a~~~~gv~~~~~~l~~~~ 173 (217)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 83
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=8.9e-31 Score=194.11 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=121.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..++|+++|++|||||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+|||||++.++..+..+++.+|++|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 4579999999999999999999988774 345565544 34556666 678899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHH-----------------cCCeEE
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK-----------------EGLSFL 152 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 152 (217)
|||+++++++..+..|+..+.... ..++|+++|+||+|+.+ .+..+++..++.. .+++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 999999999999999988876642 34899999999999975 4456666666542 346799
Q ss_pred EecCCCCCCHHHHHHHHHHH
Q 042687 153 ETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 153 ~vSa~~~~gv~~~~~~l~~~ 172 (217)
++||++|.|++++|++|.+.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999764
No 84
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.3e-29 Score=186.86 Aligned_cols=166 Identities=80% Similarity=1.210 Sum_probs=150.0
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
+.+..++|+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||++|.+.+...+..++..+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 45678999999999999999999999999888888998888888889999999999999999999998889999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~ 167 (217)
+++|||.++..+++.+..|+..+........|+++++||+|+.+.+.....++..++...++.++++|++++.|++++|+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999998888898877765555789999999999987667777888999999999999999999999999999
Q ss_pred HHHHHH
Q 042687 168 TILLDI 173 (217)
Q Consensus 168 ~l~~~~ 173 (217)
+|.+.+
T Consensus 185 ~l~~~i 190 (191)
T 1oix_A 185 TILTEI 190 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 85
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.4e-30 Score=189.54 Aligned_cols=161 Identities=20% Similarity=0.337 Sum_probs=129.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCc-cccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNE-FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~i 88 (217)
...++|+|+|.+|||||||+++|.+.. +...+.+|.+ .....+.+++ +.+.+|||||++.+...+..++.++|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 456999999999999999999999887 4555666655 4455555665 5788999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC---CCCeEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEecCCCCC
Q 042687 89 LLVYDITKRQTFDNVTRWLRELRDHAD---SNIVIMMAGNKSDLNHLRAVAAEDAQILAE-----KEGLSFLETSALEAL 160 (217)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~ 160 (217)
|+|||+++++++..+..|+..+..... .++|+++|+||+|+.+. ...+++..... ..+++++++||++|.
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 999999999999999889888776543 48999999999999753 33455555543 235789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDIYHI 176 (217)
Q Consensus 161 gv~~~~~~l~~~~~~~ 176 (217)
|++++|++|.+.+.+.
T Consensus 173 gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 173 GLQEGVDWLQDQIQTV 188 (190)
T ss_dssp THHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999877443
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=4.8e-31 Score=189.36 Aligned_cols=156 Identities=20% Similarity=0.358 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEE
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~ 92 (217)
+||+++|++|||||||+++|.++.+.. +.+|.+ .....+..++ +.+.+||+||++.+...+..++.++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887753 455655 3333444443 67889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHHHH-----HHHcCCeEEEecCCCCCCHHHHH
Q 042687 93 DITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQIL-----AEKEGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 93 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~vSa~~~~gv~~~~ 166 (217)
|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ...+.... +...+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999998888887654 23479999999999996532 22222221 11234679999999999999999
Q ss_pred HHHHHHHHH
Q 042687 167 QTILLDIYH 175 (217)
Q Consensus 167 ~~l~~~~~~ 175 (217)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987643
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.6e-30 Score=187.71 Aligned_cols=157 Identities=21% Similarity=0.357 Sum_probs=125.5
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..++|+|+|++|||||||+++|.++.+. .+.+|.+ .....+.+++ +.+.+||+||++.+...+..+++.+|++|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 4589999999999999999999988874 3455554 3344555554 578899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHH-----HHHHcCCeEEEecCCCCCCHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQI-----LAEKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~vSa~~~~gv~~ 164 (217)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+... ..+... .+...+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 999999999999988887765543 24899999999999976422 222222 1223456899999999999999
Q ss_pred HHHHHHHHHH
Q 042687 165 AFQTILLDIY 174 (217)
Q Consensus 165 ~~~~l~~~~~ 174 (217)
+|++|.+.+.
T Consensus 159 l~~~l~~~i~ 168 (171)
T 1upt_A 159 AMEWLVETLK 168 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=5.1e-31 Score=193.76 Aligned_cols=159 Identities=19% Similarity=0.330 Sum_probs=127.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..+||+|+|.+|||||||+++|.++.+...+.+|.+.++.. +... .+.+.+||+||++.+...+..++..+|++|+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 56999999999999999999999998877777777765543 3344 3678899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILA-----EKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~gv~~ 164 (217)
|||++++++++.+..|+..+.... ..++|+++|+||+|+.... ...+..... ...+++++++||++|.|+++
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence 999999999999988888876542 2489999999999997532 222222211 12346799999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 165 AFQTILLDIYH 175 (217)
Q Consensus 165 ~~~~l~~~~~~ 175 (217)
+|++|.+.+.+
T Consensus 175 l~~~l~~~~~~ 185 (188)
T 1zd9_A 175 TLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHHh
Confidence 99999886643
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=7.1e-30 Score=188.04 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=126.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..++|+++|++|||||||+++|.++.+. .+.+|.+. ....+.+++ +.+.+|||||++.++..+..+++.+|++|+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 4579999999999999999999998874 44555554 345566776 678899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHHH------------cCCeEEEecCC
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK------------EGLSFLETSAL 157 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~vSa~ 157 (217)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+.... .+++++++||+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 999999999999999988876542 34899999999999975 3445565555432 34689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 042687 158 EALNVEKAFQTILLD 172 (217)
Q Consensus 158 ~~~gv~~~~~~l~~~ 172 (217)
+|.|++++|++|.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999999763
No 90
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=4.2e-31 Score=193.60 Aligned_cols=165 Identities=20% Similarity=0.407 Sum_probs=123.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcC--ccccCCCCCcceeeEEEEEEE---CCeEEEEEEEecCChhhhccchhhhhcCCc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRN--EFCLESKSTIGVEFATRTLQV---EGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 86 (217)
.+||+|+|++|||||||+++|.+. .+...+.+|.+.++....+.+ ++..+.+.+||++|++.+..++..++.++|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 444556677777766555443 345678899999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC---HHHHHHHHHHcCCe----EEEecCCC
Q 042687 87 GALLVYDITKR-QTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA---AEDAQILAEKEGLS----FLETSALE 158 (217)
Q Consensus 87 ~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~vSa~~ 158 (217)
++++|||++++ .++..+..|+..+..... +.|+++|+||+|+.+.+.+. ..+...++...+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 478889999998876643 79999999999997644332 23345566666776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHHHH
Q 042687 159 AL-NVEKAFQTILLDIYHII 177 (217)
Q Consensus 159 ~~-gv~~~~~~l~~~~~~~~ 177 (217)
+. +++++++.|.+.+.+..
T Consensus 161 ~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC-
T ss_pred CchhHHHHHHHHHHHHhccc
Confidence 96 99999999988775543
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=5.7e-30 Score=186.99 Aligned_cols=158 Identities=20% Similarity=0.338 Sum_probs=124.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 87 (217)
.....+||+|+|.+|||||||+++|.++.+ ..+.+|.+... ..+.+++ +.+.+||+||++.+...+..++.++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 344669999999999999999999999887 44556655443 3445555 678899999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEecCCCCCC
Q 042687 88 ALLVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILA-----EKEGLSFLETSALEALN 161 (217)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~g 161 (217)
+|+|||++++++++.+..|+..+.... ..++|+++|+||+|+... ....++.... ...+++++++||++|.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999988888876542 348999999999999652 2233443332 22356899999999999
Q ss_pred HHHHHHHHHHH
Q 042687 162 VEKAFQTILLD 172 (217)
Q Consensus 162 v~~~~~~l~~~ 172 (217)
++++|++|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.6e-29 Score=185.24 Aligned_cols=159 Identities=24% Similarity=0.370 Sum_probs=128.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+|+|++|||||||+++|.++. ...+.+|.+. ....+.+++ +.+.+|||||++.+...+..+++++|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 466999999999999999999999888 5566677663 344455554 57889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAE-----KEGLSFLETSALEALNVE 163 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~ 163 (217)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+... .++...... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999988888776542 34799999999999976332 333333221 345689999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYH 175 (217)
Q Consensus 164 ~~~~~l~~~~~~ 175 (217)
++|++|.+.+.+
T Consensus 169 ~l~~~l~~~i~~ 180 (186)
T 1ksh_A 169 PGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.6e-29 Score=185.55 Aligned_cols=158 Identities=20% Similarity=0.337 Sum_probs=124.5
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..++|+|+|.+|||||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.+...+..++.++|++|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4599999999999999999999988876 555665533 33445555 678899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAE-----KEGLSFLETSALEALNVEK 164 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~~ 164 (217)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.|+++
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence 999999999999999988877653 248999999999999752 23344443332 3456899999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 165 AFQTILLDIYH 175 (217)
Q Consensus 165 ~~~~l~~~~~~ 175 (217)
+|++|++.+.+
T Consensus 168 l~~~l~~~~~~ 178 (187)
T 1zj6_A 168 GLEWMMSRLKI 178 (187)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.8e-30 Score=191.54 Aligned_cols=158 Identities=18% Similarity=0.347 Sum_probs=120.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+|+|++|||||||+++|.++.+. .+.+|.+ +....+..++ +.+.+||+||++.+...+..++.++|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 45699999999999999999999988775 3445554 3344455554 67889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHH-----HHHcCCeEEEecCCCCCCHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQIL-----AEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~vSa~~~~gv~ 163 (217)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ...++... +...+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999988888876532 3479999999999996532 22222221 11234679999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 164 KAFQTILLDIY 174 (217)
Q Consensus 164 ~~~~~l~~~~~ 174 (217)
++|++|++.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=4.2e-30 Score=190.10 Aligned_cols=165 Identities=19% Similarity=0.174 Sum_probs=121.5
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEE-CCeEEEEEEEecCChhhhccch---hhh
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRAIT---SAY 81 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~---~~~ 81 (217)
..+.+..+||+|+|.+|||||||++++.+... .....+.+.........+ ++..+.+.+||++|++.|.... ..+
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 34556789999999999999999998877433 222222222222222233 2556789999999999887776 899
Q ss_pred hcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc-------ccccCHHHHHHHHH----HcC
Q 042687 82 YRGAVGALLVYDITKR--QTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH-------LRAVAAEDAQILAE----KEG 148 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~----~~~ 148 (217)
++++|++|+|||++++ +++..+..|+..+..... ++|+++|+||+|+.. .+.+...+...++. ..+
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 9999999999999997 677777777777654333 899999999999754 23444556677777 678
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 149 LSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 149 ~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
++++++||++ .|++++|..|++.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999998865
No 96
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=4.8e-30 Score=187.49 Aligned_cols=159 Identities=22% Similarity=0.349 Sum_probs=124.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+++|++|||||||+++|.+..+ ..+.+|.+. ....+.+++ +.+.+||+||++.+...+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4569999999999999999999998765 334455553 344455554 67889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQILA-----EKEGLSFLETSALEALNVE 163 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~gv~ 163 (217)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.+... .+++.... ...+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999998888876543 234799999999999975432 22332221 1234679999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYH 175 (217)
Q Consensus 164 ~~~~~l~~~~~~ 175 (217)
++|++|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=6.3e-29 Score=197.65 Aligned_cols=163 Identities=29% Similarity=0.497 Sum_probs=143.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..++|+++|.+|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999988777777765444 5566788999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccc------------cccCHHHHHHHHHHcCC-eEEEecC
Q 042687 91 VYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHL------------RAVAAEDAQILAEKEGL-SFLETSA 156 (217)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~vSa 156 (217)
|||++++.+++.+. .|+..+..... ++|+++|+||+|+... +.+...++..++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999986 78888877665 8999999999998542 45677888999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 042687 157 LEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 157 ~~~~gv~~~~~~l~~~~~~ 175 (217)
++|.|++++|++|.+.+++
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999987753
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.1e-29 Score=183.92 Aligned_cols=159 Identities=22% Similarity=0.388 Sum_probs=124.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+|+|++|||||||+++|.++.+ ..+.+|.+.. ...+.+++ +.+.+||+||++.+...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4569999999999999999999998877 4555666533 34455555 67889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILAE-----KEGLSFLETSALEALNVE 163 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~ 163 (217)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ....++..... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888876653 358999999999999653 22334433322 224579999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYH 175 (217)
Q Consensus 164 ~~~~~l~~~~~~ 175 (217)
++|++|.+.+.+
T Consensus 169 ~l~~~l~~~~~~ 180 (183)
T 1moz_A 169 EGLDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=4.1e-30 Score=188.91 Aligned_cols=159 Identities=19% Similarity=0.313 Sum_probs=126.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+|+|++|||||||+++|.++.+.. +.+|.+ .....+..++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 456999999999999999999998887753 445655 3344455554 57889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHH-----HHHcCCeEEEecCCCCCCHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQIL-----AEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~vSa~~~~gv~ 163 (217)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+... ..+.... +...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999988887775543 35899999999999975322 2222221 12335689999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYH 175 (217)
Q Consensus 164 ~~~~~l~~~~~~ 175 (217)
++|++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (189)
T 2x77_A 173 EGMDWLVERLRE 184 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=5e-32 Score=201.57 Aligned_cols=162 Identities=30% Similarity=0.519 Sum_probs=137.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...+||+|+|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4569999999999999999999999888777666655433 445566777788999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCcccc------------ccCHHHHHHHHHHcCC-eEEEec
Q 042687 90 LVYDITKRQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLR------------AVAAEDAQILAEKEGL-SFLETS 155 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~vS 155 (217)
+|||++++.+++.+. .|+..+..... ++|+++|+||+|+.... .+...++..++...++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999986 78887776554 79999999999996532 3445667778888887 899999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 042687 156 ALEALNVEKAFQTILLDI 173 (217)
Q Consensus 156 a~~~~gv~~~~~~l~~~~ 173 (217)
|++|.|++++|++|++.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.6e-28 Score=176.75 Aligned_cols=153 Identities=22% Similarity=0.273 Sum_probs=116.4
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc------cchhhhhc--
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR------AITSAYYR-- 83 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-- 83 (217)
.++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998776555555555555555666666 468899999987664 33355554
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 163 (217)
++|++++|+|+++.+. ...|+..+... ++|+++|+||+|+...+.+.. +...++..++++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999988543 34566666553 799999999999865444432 4677888889999999999999999
Q ss_pred HHHHHHHHHH
Q 042687 164 KAFQTILLDI 173 (217)
Q Consensus 164 ~~~~~l~~~~ 173 (217)
++|++|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=1e-27 Score=181.30 Aligned_cols=170 Identities=20% Similarity=0.178 Sum_probs=121.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh------hhh---ccchhh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ------ERY---RAITSA 80 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~~~ 80 (217)
+..++|+|+|.+|||||||+++|++..+.....+..+.+.....+..++ +.+.+|||||. +.. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4569999999999999999999999887533333333344444444454 56889999998 321 112334
Q ss_pred hhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHH---HHHHHHHHcC--CeEEE
Q 042687 81 YYRGAVGALLVYDITKRQTFD--NVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAE---DAQILAEKEG--LSFLE 153 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~ 153 (217)
++..+|++|+|||++++.++. ....|+..+..... +.|+++|+||+|+...+.+... ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS-NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc-CCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 578899999999999987754 22456655555432 7999999999999776555543 4566777776 89999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLDIYHIISKKAL 182 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~~~~~~~~~~~ 182 (217)
+||++|.|++++|++|.+.+.+.......
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~~~~~ 212 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQAESIL 212 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988766544333
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=195.39 Aligned_cols=164 Identities=28% Similarity=0.408 Sum_probs=122.7
Q ss_pred CCceeeEEEEEcCC---------CCCHHHHHhHHhc---CccccCCCCCc-ceeeEEEE--------------EEECCeE
Q 042687 8 EYDYLFKIVLIGDS---------GVGKSNILSRFTR---NEFCLESKSTI-GVEFATRT--------------LQVEGKT 60 (217)
Q Consensus 8 ~~~~~~~i~i~G~~---------~~GKstLi~~l~~---~~~~~~~~~t~-~~~~~~~~--------------~~~~~~~ 60 (217)
.....+||+|+|.+ |||||||+++|++ ..+...+.++. +.++.... ..+++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34567999999999 9999999999999 55555555543 33322111 1245677
Q ss_pred EEEEEEe-----------------------cCChhhhccchhhhhc---------------------CCcEEEEEEeCCC
Q 042687 61 VKAQIWD-----------------------TAGQERYRAITSAYYR---------------------GAVGALLVYDITK 96 (217)
Q Consensus 61 ~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~ 96 (217)
+.+.+|| ++|++.+..++..++. ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 6667777777777776 7999999999999
Q ss_pred h--hhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccccccCHHHHHHHHHH-cCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 97 R--QTFDNVTRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK-EGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 97 ~--~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
+ ++++.+..|+..+... ...++|+++|+||+|+...+.+ +++..++.. .+++++++||++|.|++++|++|++.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 8 9999999999888765 3347999999999999764443 467777766 47899999999999999999999886
Q ss_pred H
Q 042687 173 I 173 (217)
Q Consensus 173 ~ 173 (217)
+
T Consensus 253 l 253 (255)
T 3c5h_A 253 I 253 (255)
T ss_dssp H
T ss_pred h
Confidence 6
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=1.1e-27 Score=179.19 Aligned_cols=160 Identities=17% Similarity=0.203 Sum_probs=113.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCe-EEEEEEEecCChhhhcc-chhhhhcCCcE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK-TVKAQIWDTAGQERYRA-ITSAYYRGAVG 87 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 87 (217)
...++|+|+|++|||||||+++|+++.+...+.++ +.+... +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 34689999999999999999999998887666543 333333 555543 57889999999999887 78889999999
Q ss_pred EEEEEeCCChh-hHHHHHH-HHHHHHhh--cCCCCeEEEEEeCCCCccccccCH--HHHHHHHH----------------
Q 042687 88 ALLVYDITKRQ-TFDNVTR-WLRELRDH--ADSNIVIMMAGNKSDLNHLRAVAA--EDAQILAE---------------- 145 (217)
Q Consensus 88 ii~v~d~~~~~-s~~~~~~-~~~~i~~~--~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~---------------- 145 (217)
+|+|||+++.. ++..... |...+... ...++|+++|+||+|+........ ..+.....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555544 44444332 234799999999999975432111 11111111
Q ss_pred -----------------Hc--CCeEEEecCCCC------CCHHHHHHHHHHH
Q 042687 146 -----------------KE--GLSFLETSALEA------LNVEKAFQTILLD 172 (217)
Q Consensus 146 -----------------~~--~~~~~~vSa~~~------~gv~~~~~~l~~~ 172 (217)
.. +++++++||++| .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=1.8e-27 Score=187.41 Aligned_cols=161 Identities=22% Similarity=0.323 Sum_probs=127.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc---cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhh-----ccchhhhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC---LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY-----RAITSAYY 82 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~ 82 (217)
..+||+++|.+|||||||+++|.++... ..+.+|.+..+. .+.+++ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4589999999999999999999887332 234456554444 444444 578999999999988 77888899
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEeCCCCcc--ccc----cCHHHHHHHHHHcC---CeE
Q 042687 83 RGAVGALLVYDITKRQTFDNVTRWLRELRDHA--DSNIVIMMAGNKSDLNH--LRA----VAAEDAQILAEKEG---LSF 151 (217)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~ 151 (217)
+++|++|+|||++++++++.+..|...+.... ..++|+++|+||+|+.+ .+. +..+++..++..+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877765544432 34799999999999976 343 44577888998887 799
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHH
Q 042687 152 LETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 152 ~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
+++||++ .++.++|..+++.+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8999999999886543
No 106
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=1.4e-27 Score=176.03 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=111.4
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCC----------hhhhc
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG----------QERYR 75 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~ 75 (217)
..+....++|+|+|.+|||||||+++|.+..+...+.++.+.+........++ .+.+||||| ++.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence 33455679999999999999999999999876555555544444444444544 578999999 77788
Q ss_pred cchhhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCH--HHHHH-HHHHcCC
Q 042687 76 AITSAYYRGA---VGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAA--EDAQI-LAEKEGL 149 (217)
Q Consensus 76 ~~~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~ 149 (217)
.++..++..+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+...+.+.. +++.. +....++
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 7788887766 9999999999876665532 2222333 3789999999999976544322 22322 2223467
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Q 042687 150 SFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 150 ~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
+++++||++|.|++++|++|.+.+
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEccCCCCHHHHHHHHHHHh
Confidence 999999999999999999998865
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=2.8e-27 Score=171.79 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=118.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
+..++|+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++. .+.+|||||++.+...+..++..+|++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 45689999999999999999999999887776666666666666677775 4569999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHH-------cC--CeEEEecCCCCC
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK-------EG--LSFLETSALEAL 160 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~vSa~~~~ 160 (217)
+|||++++....... ++..+. ..++|+++|+||+|+... ...+....... ++ ++++++||++|.
T Consensus 84 ~v~d~~~~~~~~~~~-~l~~~~---~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE-AINHAK---AANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE 156 (178)
T ss_dssp EEEETTCCCCHHHHH-HHHHHG---GGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred EEEECCCCCcHHHHH-HHHHHH---hCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence 999998843222221 222222 237899999999999752 12233222222 22 589999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDIYH 175 (217)
Q Consensus 161 gv~~~~~~l~~~~~~ 175 (217)
|++++|++|++.+..
T Consensus 157 gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 157 GLDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhh
Confidence 999999999987644
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=3.3e-27 Score=173.07 Aligned_cols=156 Identities=21% Similarity=0.267 Sum_probs=123.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc------cchhhhhc-
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR------AITSAYYR- 83 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 83 (217)
..++|+|+|++|||||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||++.+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 458999999999999999999998776555556656666666666766 567899999987664 34555554
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 042687 84 -GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNV 162 (217)
Q Consensus 84 -~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 162 (217)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+...+.+. .+...++...+++++++||+++.|+
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5999999999875 4555667776655 378999999999986644443 3567788888999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 163 EKAFQTILLDIYH 175 (217)
Q Consensus 163 ~~~~~~l~~~~~~ 175 (217)
+++|++|.+.+.+
T Consensus 157 ~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 157 EELKKAISIAVKD 169 (188)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987744
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=1.1e-27 Score=175.85 Aligned_cols=157 Identities=22% Similarity=0.252 Sum_probs=117.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCC-----------hhhhccchhhh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG-----------QERYRAITSAY 81 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 81 (217)
+||+|+|++|||||||+++|.+..+...+.++.+.... .+... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999887666665443333 33333 577999999 67777777777
Q ss_pred hcC-CcEEEEEEeCCChhhHHHH-HHHHHH---------HHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCe
Q 042687 82 YRG-AVGALLVYDITKRQTFDNV-TRWLRE---------LRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLS 150 (217)
Q Consensus 82 ~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~---------i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (217)
+.. +++++++|++.|..++..+ ..|... +......++|+++|+||+|+...+ .++...++..++.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 7766777777666777665 555532 122223479999999999997644 55677888888764
Q ss_pred -------EEEecCCCCCCHHHHHHHHHHHHHHHHH
Q 042687 151 -------FLETSALEALNVEKAFQTILLDIYHIIS 178 (217)
Q Consensus 151 -------~~~vSa~~~~gv~~~~~~l~~~~~~~~~ 178 (217)
++++||++|.|++++|++|.+.+.+...
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998865433
No 110
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.8e-28 Score=192.38 Aligned_cols=158 Identities=19% Similarity=0.328 Sum_probs=118.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..++|+|+|.+|||||||+++|.+..+.... +|.+..+ ..+...+ +.+.+|||||++.+..++..++..+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3479999999999999999999988875433 4554333 3344444 678899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILA-----EKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~gv~~ 164 (217)
|||++++.++..+..|+..+.... ..++|++||+||+|+.+... ..++.... ...+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 999999999999987777665433 35899999999999976332 22222221 12345799999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 165 AFQTILLDIYH 175 (217)
Q Consensus 165 ~~~~l~~~~~~ 175 (217)
+|++|++.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999987743
No 111
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=3.4e-28 Score=190.45 Aligned_cols=165 Identities=19% Similarity=0.168 Sum_probs=124.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcccc---CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc---chhhhhcCCcE
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCL---ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA---ITSAYYRGAVG 87 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 87 (217)
||+++|..|||||||++++.++.+.. .+.+|.+.++.. ++ ..+++++|||+|+++|+. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988664432 245777766653 22 347899999999999974 46889999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccc-------cccCHHHHHHHHHH----cCCeEEEe
Q 042687 88 ALLVYDITKR--QTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL-------RAVAAEDAQILAEK----EGLSFLET 154 (217)
Q Consensus 88 ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~v 154 (217)
+|+|||++++ +....+..|+..+....+ ++|+++++||+|+... +.+..++.+++++. .++++++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNP-SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 344444445555544444 8999999999999653 34555667777775 67899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042687 155 SALEALNVEKAFQTILLDIYHIISKKALAAQ 185 (217)
Q Consensus 155 Sa~~~~gv~~~~~~l~~~~~~~~~~~~~~~~ 185 (217)
||++ .++.++|..+++.+.+....-...+.
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~~le~~L~ 184 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELSFLENMLD 184 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHHHHHHHHT
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9998 58999999999988765544444333
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=2.6e-27 Score=198.15 Aligned_cols=159 Identities=20% Similarity=0.355 Sum_probs=124.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii 89 (217)
...++|+|+|.+|||||||+++|.+..+. .+.+|.+..+. .+.+.+ +.+.+|||+|++.+..++..++..+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 35699999999999999999999998854 34456554433 344444 57889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Q 042687 90 LVYDITKRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVAAEDAQILA-----EKEGLSFLETSALEALNVE 163 (217)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~gv~ 163 (217)
+|||+++++++..+..|+..+.... ..++|++||+||+|+.+.. ...++.... ...+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 9999999999999988888875543 2589999999999997532 222322221 1223569999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 164 KAFQTILLDIYH 175 (217)
Q Consensus 164 ~~~~~l~~~~~~ 175 (217)
++|++|.+.+.+
T Consensus 473 ~l~~~l~~~~~~ 484 (497)
T 3lvq_E 473 EGLTWLTSNYKS 484 (497)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=2.2e-26 Score=176.96 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=120.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc------hhhhh-
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI------TSAYY- 82 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~- 82 (217)
...++|+|+|++|||||||+|+|.+..+.....++.+.+.....+...+ ..+.+|||||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 3568999999999999999999999877655445555555555555555 57889999998766542 24555
Q ss_pred -cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 83 -RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 83 -~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
..+|++|+|+|+++.++. ..|...+.+. ++|+++|+||+|+...+.+. .+...++..++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence 589999999999986543 3455555554 89999999999986644443 246778888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDI 173 (217)
Q Consensus 162 v~~~~~~l~~~~ 173 (217)
++++|++|.+.+
T Consensus 154 i~el~~~i~~~~ 165 (258)
T 3a1s_A 154 LEELKEKIVEYA 165 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.3e-26 Score=165.56 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh-------hccchhhhhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYYRG 84 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 84 (217)
+||+++|++|||||||+++|.+..+. ....++.+.+.....+..++. .+.+|||||... +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988754 233344444555666666665 677999999876 34556677899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCHH
Q 042687 85 AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNVE 163 (217)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~ 163 (217)
+|++|+|||++++.+... ..+...+.. .+.|+++|+||+|+.+.. +++..++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999988543322 122222222 278999999999997642 2334444 5677 89999999999999
Q ss_pred HHHHHHHHHH
Q 042687 164 KAFQTILLDI 173 (217)
Q Consensus 164 ~~~~~l~~~~ 173 (217)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=4.4e-26 Score=179.59 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=125.5
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCC-CCcceeeEEEEEEECCeEEEEEEEecCChhhh----------c
Q 042687 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGVEFATRTLQVEGKTVKAQIWDTAGQERY----------R 75 (217)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~ 75 (217)
.++.+...|+|+|.+|||||||+|+|++..+..... +..+..........+ ....+.+|||||.... .
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 456677899999999999999999999988764332 333333333334444 1356789999997443 3
Q ss_pred cchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEE
Q 042687 76 AITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG--LSFLE 153 (217)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~ 153 (217)
.....++..+|++++|+|++++.+......|+..+... +.|+++|+||+|+.............+....+ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 55677889999999999999988888877777777663 79999999999997434445566777777775 78999
Q ss_pred ecCCCCCCHHHHHHHHHHHH
Q 042687 154 TSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 154 vSa~~~~gv~~~~~~l~~~~ 173 (217)
+||++|.|++++|++|.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYL 180 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHS
T ss_pred EeCCCCCCHHHHHHHHHHhC
Confidence 99999999999999998866
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=5.8e-27 Score=169.80 Aligned_cols=153 Identities=19% Similarity=0.219 Sum_probs=114.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc--------hhhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI--------TSAY 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 81 (217)
..++|+|+|++|||||||+++|.+..+. ....++.+.++....+.+++. .+.+|||||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3589999999999999999999987653 222344455666677777775 4679999997542211 1235
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
++.+|++++|||++++.+++. ..|+..+......++|+++|+||+|+..... .++...+.+++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 789999999999998877653 4677777766555799999999999854211 01112457899999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDI 173 (217)
Q Consensus 162 v~~~~~~l~~~~ 173 (217)
++++|++|.+.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=5.6e-26 Score=167.18 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=115.0
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCC----------hhhh
Q 042687 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG----------QERY 74 (217)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~ 74 (217)
...+....++|+|+|.+|||||||+++|.+.... ...++.+.+........+. .+.+||||| ++.+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~ 91 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW 91 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence 3445566789999999999999999999998743 3333434344333333443 466999999 6677
Q ss_pred ccchhhhhcCC---cEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc--ccCHHHHHHHHHHc
Q 042687 75 RAITSAYYRGA---VGALLVYDITKRQTF--DNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR--AVAAEDAQILAEKE 147 (217)
Q Consensus 75 ~~~~~~~~~~~---d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~ 147 (217)
...+..++..+ |++++|+|+++..+. ..+..|+. .. ++|+++|+||+|+.... ....+++..++...
T Consensus 92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 77777777665 999999999875432 23333433 22 78999999999986433 22234555666654
Q ss_pred C-CeEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 148 G-LSFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 148 ~-~~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
+ ++++++||++|.|++++|++|.+.+.
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 4 79999999999999999999998764
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=2e-26 Score=176.89 Aligned_cols=151 Identities=19% Similarity=0.174 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc----------chhhhh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA----------ITSAYY 82 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 82 (217)
.+|+++|.+|||||||+|+|.+........++.+.+.....+.+++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 58999999999999999999998766555566666777777777775 678999999876553 455666
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCC
Q 042687 83 --RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEAL 160 (217)
Q Consensus 83 --~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 160 (217)
..+|++|+|+|+++.++...+ ...+.+. ++|+++|+||+|+...+... .....+...++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l---~~~l~~~---~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL---TSQLFEL---GKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH---HHHHTTS---CSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHH---HHHHHHc---CCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999986554443 3333333 89999999999986543322 23456777889999999999999
Q ss_pred CHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLD 172 (217)
Q Consensus 161 gv~~~~~~l~~~ 172 (217)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999763
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=5.4e-27 Score=197.68 Aligned_cols=163 Identities=22% Similarity=0.265 Sum_probs=123.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEE------E--EECCeEEEEEEEecCChhhhccchhh
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRT------L--QVEGKTVKAQIWDTAGQERYRAITSA 80 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~------~--~~~~~~~~~~i~D~~G~~~~~~~~~~ 80 (217)
....+||+++|.+|||||||+++|.+..+...+.+|.+.++.... + ..++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999999988777788776665442 1 12233568899999999999999999
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCC
Q 042687 81 YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEAL 160 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 160 (217)
++..+|++|+|||+++. +.+..|+..+..... +.|+++|+||+|+...+.+..+++..++...+++++++||++|.
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 99999999999999765 456778888877754 79999999999998777777888888888889999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 042687 161 NVEKAFQTILLDIYH 175 (217)
Q Consensus 161 gv~~~~~~l~~~~~~ 175 (217)
|++++|++|.+.+.+
T Consensus 194 gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 194 GVESIAKSLKSAVLH 208 (535)
T ss_dssp -CTTHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987754
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=2.8e-26 Score=177.36 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=115.1
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc------cchhhhhc--
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR------AITSAYYR-- 83 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-- 83 (217)
.++|+++|++|||||||+|+|.+........++.+.+. ....+.. ...+.+|||||...+. .+...++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 58999999999999999999998764433334333333 3333444 5578899999987665 34455665
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 163 (217)
.+|++|+|+|+++.++. ..|...+.+. ++|+++++||+|+...+.+. .+...++..++++++++||++|.|++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~~---~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIET---GIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHHT---CSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHhc---CCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 69999999999886543 4555555553 89999999999986544443 35677888889999999999999999
Q ss_pred HHHHHHHHHH
Q 042687 164 KAFQTILLDI 173 (217)
Q Consensus 164 ~~~~~l~~~~ 173 (217)
++|++|.+.+
T Consensus 153 el~~~i~~~~ 162 (272)
T 3b1v_A 153 QVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=1.1e-25 Score=169.29 Aligned_cols=167 Identities=18% Similarity=0.121 Sum_probs=111.9
Q ss_pred CCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEEC-CeEEEEEEEecCC----------hhh
Q 042687 5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAG----------QER 73 (217)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G----------~~~ 73 (217)
.+.+....++|+|+|.+|||||||+++|++.........+.+.+.......+. .....+.+||||| .+.
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 34445567999999999999999999999986322222222222223333333 3335678999999 344
Q ss_pred hccchhhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC--HHHHHHHHHH--
Q 042687 74 YRAITSAYYRG---AVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA--AEDAQILAEK-- 146 (217)
Q Consensus 74 ~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~-- 146 (217)
+......++.. +|++++|+|+++..+. ....|+..+.. .++|+++|+||+|+....... ..++......
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 55566666655 8889999999875432 22344555544 378999999999987643321 1222222222
Q ss_pred -----cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 042687 147 -----EGLSFLETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 147 -----~~~~~~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
.+++++++||++|.|++++|++|.+.+.+
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 45789999999999999999999987744
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=3e-25 Score=171.94 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=120.2
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc------chhhhh--c
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA------ITSAYY--R 83 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~ 83 (217)
.++|+|+|++|||||||+++|.+..+.....++.+.+.....+..++. .+.+|||||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 489999999999999999999998775555666666776677777765 478999999876655 455555 6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVE 163 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 163 (217)
.+|++|+|+|+++.+ ....|...+.+.. ..|+++|+||+|+...+.... +...+...++++++++||++|.|++
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHH
Confidence 899999999998753 3334444444441 299999999999865443332 3677888889999999999999999
Q ss_pred HHHHHHHHHH
Q 042687 164 KAFQTILLDI 173 (217)
Q Consensus 164 ~~~~~l~~~~ 173 (217)
++|+++.+.+
T Consensus 155 ~l~~~i~~~~ 164 (271)
T 3k53_A 155 ELKRMIALMA 164 (271)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=1.1e-25 Score=174.52 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=116.7
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc----------chhhh
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA----------ITSAY 81 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~ 81 (217)
.++|+++|.+|||||||+|+|.+..+.....++.+.+.....+...+. .+.+|||||...+.. ....+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 489999999999999999999998765555566666666666666654 567999999876552 12333
Q ss_pred h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCC
Q 042687 82 Y--RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEA 159 (217)
Q Consensus 82 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 159 (217)
+ ..+|++|+|+|+++.+.... |...+.+. ++|+++|+||+|+.+.+... .....+...++++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence 3 79999999999988655443 44444444 89999999999986543322 2356677888999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLDI 173 (217)
Q Consensus 160 ~gv~~~~~~l~~~~ 173 (217)
.|++++|++|.+.+
T Consensus 154 ~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 154 RGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998754
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=3.7e-26 Score=171.46 Aligned_cols=145 Identities=19% Similarity=0.291 Sum_probs=106.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccC---CCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcC
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLE---SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 84 (217)
.....++|+|+|++|||||||+++|.+..+... +.++.+.++ ..+.+.+||+||++.++..+..++..
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 345679999999999999999999999876542 333332222 33467899999999998888888877
Q ss_pred ----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCCccccccC------HHHHHHHHHHcCC
Q 042687 85 ----AVGALLVYDIT-KRQTFDNVTRWLRELRDH----ADSNIVIMMAGNKSDLNHLRAVA------AEDAQILAEKEGL 149 (217)
Q Consensus 85 ----~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~ 149 (217)
+|++|+|||++ +++++..+..|+..+... ...++|+++|+||+|+...+.+. .+++..++...++
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888888888888777654 33589999999999997654433 3456677777778
Q ss_pred eEEEecCCCCCC
Q 042687 150 SFLETSALEALN 161 (217)
Q Consensus 150 ~~~~vSa~~~~g 161 (217)
+++++||++|.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 899999998764
No 125
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=2.4e-25 Score=181.36 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=116.9
Q ss_pred CCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc-----
Q 042687 4 KVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI----- 77 (217)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----- 77 (217)
|...+....++|+|+|+.|+|||||+++|.+..+. ....++.+.+.....+.+.+.. .+.+|||||++.+...
T Consensus 26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~ 104 (423)
T 3qq5_A 26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRV 104 (423)
T ss_dssp CCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCH
T ss_pred cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHH
Confidence 44556677899999999999999999999988764 2333444455556666666543 6789999998876544
Q ss_pred --hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEec
Q 042687 78 --TSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETS 155 (217)
Q Consensus 78 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 155 (217)
+..++..+|++|+|+|+... .....|+..+... ++|+++|+||+|+...+.. +....+...++++++++|
T Consensus 105 ~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVS 176 (423)
T ss_dssp HHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCS
T ss_pred HHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEE
Confidence 34578899999999999433 2335666666665 8999999999999765443 456667777789999999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 042687 156 ALEALNVEKAFQTILLDI 173 (217)
Q Consensus 156 a~~~~gv~~~~~~l~~~~ 173 (217)
|++|.|++++|++|.+.+
T Consensus 177 Aktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp SCCTTSTTTHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999998876
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=3.3e-23 Score=166.41 Aligned_cols=162 Identities=16% Similarity=0.194 Sum_probs=120.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc---------cchhh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR---------AITSA 80 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~ 80 (217)
...++|+++|++|||||||+++|.+........+..+.......+..++ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 3558999999999999999999998775433222223333344444443 467899999974321 11223
Q ss_pred hhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCC
Q 042687 81 YYRGAVGALLVYDITKRQ--TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALE 158 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 158 (217)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.....+ ++...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999998876 67777888888877655 7999999999999764332 445666677889999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~~~~ 176 (217)
|.|++++|++|.+.+.+.
T Consensus 320 g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=2.9e-24 Score=176.80 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=115.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCCh----------hhhccch
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ----------ERYRAIT 78 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 78 (217)
+..++|+++|.+|||||||+|+|++.... ....++++.+.....+..++. .+.+|||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35689999999999999999999988764 333344445555556667775 4779999997 4444433
Q ss_pred h-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHH-HHHHH----cCCeEE
Q 042687 79 S-AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQ-ILAEK----EGLSFL 152 (217)
Q Consensus 79 ~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 152 (217)
. .+++.+|++|+|+|++++.+.+.. .|+..+... ++|+++|+||+|+.+.+.....+.. .+... .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 477899999999999998877765 566666543 8999999999999765443333332 22222 367999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHH
Q 042687 153 ETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 153 ~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
++||++|.|++++|+.+.+.+.+
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987754
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=6.4e-24 Score=175.56 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=98.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccch--------hhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT--------SAY 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 81 (217)
..++|+|+|.+|||||||+|+|.+.... ....++++.+.....+.+++. .+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3489999999999999999999987643 333344455565566677774 67899999987655433 346
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
+..+|++|+|+|++++.+++.+..+...+.... ++|+++|+||+|+...... +.+.+......+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 789999999999999877653333333333322 7999999999999764433 22334443237899999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIY 174 (217)
Q Consensus 162 v~~~~~~l~~~~~ 174 (217)
++++|++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998774
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=9.3e-24 Score=174.69 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=118.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCC----------hhhhccch
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAG----------QERYRAIT 78 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 78 (217)
+..++|+++|.+|+|||||+++|.+.... ....++++.+.....+..++. .+.+||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 45689999999999999999999976532 333344445555556667775 677999999 56666554
Q ss_pred h-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHc-----CCeEE
Q 042687 79 S-AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKE-----GLSFL 152 (217)
Q Consensus 79 ~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~ 152 (217)
. .+++.+|++|+|+|+++.... ....|+..+... ++|+++|+||+|+.+.+....++..+.+... +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~~---~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHEA---GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHHT---TCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHHc---CCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 477899999999999875442 224555555543 7999999999999876655556666655544 57999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHH
Q 042687 153 ETSALEALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 153 ~vSa~~~~gv~~~~~~l~~~~~~~ 176 (217)
++||++|.|++++|+++.+.+.+.
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999999999999877544
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=1.9e-23 Score=163.78 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=107.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCC-CCCcceeeEEEEEEECCeEEEEEEEecCChhh--------hccchhhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQER--------YRAITSAY 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 81 (217)
...+|+|+|.+|||||||+|+|++..+.... .+.++.......+..++ ..+.+|||||... +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 3468999999999999999999998876432 22222233222333333 5788999999754 44556678
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHH-cC-CeEEEecCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWL-RELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK-EG-LSFLETSALE 158 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~vSa~~ 158 (217)
++.+|++++|||++++.+.. ..|+ ..+.... .+.|+++|+||+|+...... ....... .+ .+++++||++
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTTC
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCCC
Confidence 89999999999998764433 2343 4454433 37999999999998753320 2222222 23 4799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDI 173 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~ 173 (217)
|.|++++|++|.+.+
T Consensus 157 g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 157 ERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999998754
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=1.1e-23 Score=167.40 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh----hccchhhhh---cCC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----YRAITSAYY---RGA 85 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~ 85 (217)
.+|+|+|.+|||||||+++|.+........+..+.......+.+++. ..+.+||+||... +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36899999999999999999987654322222223333334455431 3678999999643 333444554 459
Q ss_pred cEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEecCCC
Q 042687 86 VGALLVYDITK---RQTFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG--LSFLETSALE 158 (217)
Q Consensus 86 d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~ 158 (217)
|++|+|+|+++ +++++.+..|+..+..... .++|+++|+||+|+.... +....+...++ ++++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7889999999988887653 479999999999987522 34566666666 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDI 173 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~ 173 (217)
+.|+++++.+|.+.+
T Consensus 314 g~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 314 REGLRELLFEVANQL 328 (342)
T ss_dssp SSTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998876
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=3.6e-22 Score=162.81 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=113.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEE---------------------E---CCeEEEEE
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQ---------------------V---EGKTVKAQ 64 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~---------------------~---~~~~~~~~ 64 (217)
..+.++|+++|++++|||||+++|.+........ +...... . ......+.
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG------YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRIS 78 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE------EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccC------ccccceeeccccccccceecccccccccccccccccceEE
Confidence 4466999999999999999999998754322110 0000000 0 11236789
Q ss_pred EEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC--HHHHHH
Q 042687 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA--AEDAQI 142 (217)
Q Consensus 65 i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~ 142 (217)
+|||||++.|...+..++..+|++|+|+|+++..++....+|+..+.... ..|+++++||+|+.+..... .+++..
T Consensus 79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 79 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp EEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999998765666667766665542 35899999999997633211 122333
Q ss_pred HHHHc---CCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 143 LAEKE---GLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 143 ~~~~~---~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
+.... +++++++||++|.|+++++++|.+.+
T Consensus 157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 33222 57899999999999999999998754
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=2.3e-22 Score=165.64 Aligned_cols=150 Identities=20% Similarity=0.300 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh---------hccchhhhh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER---------YRAITSAYY 82 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 82 (217)
.+|+|+|.+|||||||+|+|++.... ....++.+.+.....+..++. .+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 48999999999999999999988754 233455555666677777775 467999999653 344567789
Q ss_pred cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHH-HHHHHHcCC-eEEEecCCC
Q 042687 83 RGAVGALLVYDITKRQTFDN--VTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDA-QILAEKEGL-SFLETSALE 158 (217)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~vSa~~ 158 (217)
+.+|++|+|+|+.++.+... +..|+. .. ++|+++|+||+|+.... ..+. .++. .+++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~~---~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---KS---TVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---HH---TCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999987544332 333332 22 78999999999986421 1222 3343 4566 789999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDIY 174 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~~ 174 (217)
|.|+++++++|.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 150 NINLDTMLETIIKKLE 165 (439)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999988774
No 134
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=6.3e-22 Score=161.59 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=104.0
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCc---cccCCCC--CcceeeEEEEEEE-------------C--C----eEEEEEE
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNE---FCLESKS--TIGVEFATRTLQV-------------E--G----KTVKAQI 65 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~---~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~~~i 65 (217)
...++|+++|+.++|||||+++|.+.. +..+..+ |....+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 356999999999999999999998543 3333333 4443443333321 1 1 1367899
Q ss_pred EecCChhhhccchhhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc--cCHHH
Q 042687 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKR----QTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA--VAAED 139 (217)
Q Consensus 66 ~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~ 139 (217)
|||||++.|...+...+..+|++|+|+|+++. ++.+.+. .+.... ..|+++++||+|+..... ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEILG--IDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHTT--CCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHcC--CCeEEEEEEccCCCCHHHHHHHHHH
Confidence 99999999988888888899999999999854 3433332 222221 357999999999976433 22355
Q ss_pred HHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 140 AQILAEK---EGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 140 ~~~~~~~---~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
+..++.. .+++++++||++|.|+++++++|.+.+
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 6666654 357899999999999999999997654
No 135
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=3.1e-22 Score=166.25 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=110.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCc-------cccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNE-------FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR 83 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 83 (217)
..++|+++|+.++|||||+++|.+.. +..+..+..+.+.....+.+++ ..+.+|||||++.|...+...+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 46899999999999999999998766 2222223233333333445555 56789999999999888889999
Q ss_pred CCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc--CHHHHHHHHHHc----CCeEEEe
Q 042687 84 GAVGALLVYDITK---RQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--AAEDAQILAEKE----GLSFLET 154 (217)
Q Consensus 84 ~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~v 154 (217)
.+|++|+|+|+++ +++.+.+ ..+... ++|+++++||+|+.+.... ..+++..++... +++++++
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l----~~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHM----LILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHH----HHHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred hCCEEEEEEecCCCccHHHHHHH----HHHHHc---CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 9999999999987 3443332 223332 7888999999999753221 233455566555 5789999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q 042687 155 SALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 155 Sa~~~~gv~~~~~~l~~~~~ 174 (217)
||++|.|+++++++|.+.+.
T Consensus 169 SA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999988663
No 136
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=4.6e-22 Score=167.95 Aligned_cols=158 Identities=22% Similarity=0.291 Sum_probs=113.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCc--cccC-----CC------CCcceee----EEEEEEE-CCeEEEEEEEecCCh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNE--FCLE-----SK------STIGVEF----ATRTLQV-EGKTVKAQIWDTAGQ 71 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~--~~~~-----~~------~t~~~~~----~~~~~~~-~~~~~~~~i~D~~G~ 71 (217)
+...+|+|+|+.++|||||+++|+... .... .. ...+.+. ....+.. ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456899999999999999999997632 1110 00 0011111 1111221 456688999999999
Q ss_pred hhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC--
Q 042687 72 ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-- 149 (217)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 149 (217)
..|...+..++..+|++|+|+|+++..+.+....|..... .++|+++++||+|+...+ ......++....++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999989999999999999999999877777777765443 289999999999997533 12334556666666
Q ss_pred -eEEEecCCCCCCHHHHHHHHHHHH
Q 042687 150 -SFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 150 -~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
+++++||++|.|++++|++|++.+
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred ccEEEEEeecCCCchHHHHHHHHhc
Confidence 499999999999999999998766
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=1.1e-22 Score=168.27 Aligned_cols=153 Identities=20% Similarity=0.234 Sum_probs=114.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChh-hhcc--------chhhh
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE-RYRA--------ITSAY 81 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~ 81 (217)
.++|+|+|.+|||||||+|+|.+..+. ....++++.+.....+.+++. .+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999987643 333344455666666777774 57899999987 5432 23457
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
+..+|++|+|||++++.+++... ++..+ .++|+++|+||+|+... ...+++..+.. .+++++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 88999999999999887765532 23322 27899999999999653 33444444432 447899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIYH 175 (217)
Q Consensus 162 v~~~~~~l~~~~~~ 175 (217)
++++|++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999997653
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=2.8e-22 Score=169.57 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=110.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCc--ccc-----CC------CCCcceeeEE--EEEEE---CCeEEEEEEEecCChh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNE--FCL-----ES------KSTIGVEFAT--RTLQV---EGKTVKAQIWDTAGQE 72 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~--~~~-----~~------~~t~~~~~~~--~~~~~---~~~~~~~~i~D~~G~~ 72 (217)
...+|+|+|+.++|||||+++|+... ... .. ..+.+.+... ..+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999997632 110 00 0112222222 22222 4567889999999999
Q ss_pred hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC---
Q 042687 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL--- 149 (217)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 149 (217)
.|...+..++..+|++|+|+|+++..+.+....|..... .++|+++++||+|+...+ ......++...+++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999998777777777765543 278999999999997633 22334556666676
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Q 042687 150 SFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 150 ~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
+++++||++|.|+++++++|.+.+
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHS
T ss_pred eEEEeecccCCCchhHHHHHhhcC
Confidence 499999999999999999998765
No 139
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=5.1e-22 Score=162.25 Aligned_cols=160 Identities=22% Similarity=0.204 Sum_probs=111.8
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCc---cccCCCC--CcceeeEEEEEEE-------------C--C----eEEEE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNE---FCLESKS--TIGVEFATRTLQV-------------E--G----KTVKA 63 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~---~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~~ 63 (217)
...+.++|+++|+.++|||||+++|.+.. +..+..+ |....+....+.. . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34677999999999999999999998542 3333333 4433443333321 1 1 13678
Q ss_pred EEEecCChhhhccchhhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc--cCH
Q 042687 64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----QTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA--VAA 137 (217)
Q Consensus 64 ~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~ 137 (217)
.+|||||++.|...+...+..+|++|+|+|+++. ++.+.+. .+.... ..|+++++||+|+.+... ...
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHH
Confidence 9999999999988888888899999999999854 3333332 222221 357999999999976332 122
Q ss_pred HHHHHHHHH---cCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 138 EDAQILAEK---EGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 138 ~~~~~~~~~---~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
+++..++.. .+++++++||++|.|+++++++|.+.+
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 345555543 357899999999999999999987654
No 140
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=1.5e-21 Score=156.65 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=109.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh---------hhhccchhhhhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ---------ERYRAITSAYYRG 84 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~~~ 84 (217)
.|+|+|++|||||||+|+|.+..+.....+..+.+.....+.+++. .+.+|||+|. +.+...+ ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 4999999999999999999988764333333344555667777774 5679999995 2233333 35788
Q ss_pred CcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc-CHHHHHHHHHHc---CCeEEEecCCC
Q 042687 85 AVGALLVYDITKRQ--TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-AAEDAQILAEKE---GLSFLETSALE 158 (217)
Q Consensus 85 ~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~vSa~~ 158 (217)
+|++++|+|++++. ..+.+..|...+......+.|+++|+||+|+.+.... ....+..++... +.+++++||++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 5556666666666554457899999999998653210 012233344544 34789999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 042687 159 ALNVEKAFQTILLDIYH 175 (217)
Q Consensus 159 ~~gv~~~~~~l~~~~~~ 175 (217)
+.|+++++++|.+.+..
T Consensus 338 g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcc
Confidence 99999999999886643
No 141
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=4.3e-21 Score=145.91 Aligned_cols=162 Identities=16% Similarity=0.158 Sum_probs=105.1
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCC--CcceeeEEEEEEECCeEEEEEEEecCCh-----------hhh
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKS--TIGVEFATRTLQVEGKTVKAQIWDTAGQ-----------ERY 74 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~ 74 (217)
+....++|+|+|++|||||||+|+|++..+.....+ +.+.......+..++. .+.+|||||. ..+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHH
Confidence 344679999999999999999999999887655444 3444555555666664 5679999993 344
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC------HHHHHHHHHH
Q 042687 75 RAITSAYYRGAVGALLVYDITKRQT--FDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA------AEDAQILAEK 146 (217)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~ 146 (217)
...+..+++.+|++|+|+|+++... ...+..+...+.... ..|+++|+||+|+.....+. .+.+..+...
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 5555566778999999999875433 222333333332221 46899999999986543332 1357778888
Q ss_pred cCCeEEEecCCCC-----CCHHHHHHHHHHHH
Q 042687 147 EGLSFLETSALEA-----LNVEKAFQTILLDI 173 (217)
Q Consensus 147 ~~~~~~~vSa~~~-----~gv~~~~~~l~~~~ 173 (217)
.+..++.++...+ .++.++|..+.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 8888888876644 56777776665544
No 142
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=1.7e-21 Score=160.20 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=104.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccc-------------------------------cCCCCCcceeeEEEEEEEC
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFC-------------------------------LESKSTIGVEFATRTLQVE 57 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 57 (217)
....++|+++|++++|||||+++|+..... .+..+..+.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 345699999999999999999999543211 1111233444444444444
Q ss_pred CeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCe-EEEEEeCCCCc
Q 042687 58 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVTRWLRELRDHADSNIV-IMMAGNKSDLN 130 (217)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~ 130 (217)
+ ..+.+|||||++.|...+..++..+|++|+|+|+++... ++ ...+.+..+... ++| +++++||+|+.
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~---~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA---GVKHLIVLINKMDDP 168 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc---CCCeEEEEeecCCCc
Confidence 4 478899999999999999999999999999999987532 11 112222222222 667 89999999985
Q ss_pred ccc------ccCHHHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Q 042687 131 HLR------AVAAEDAQILAEKEG------LSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 131 ~~~------~~~~~~~~~~~~~~~------~~~~~vSa~~~~gv~~~~~ 167 (217)
... .....++..++...+ ++++++||++|.|++++++
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 311 111233445554444 5799999999999999765
No 143
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=8.2e-22 Score=151.71 Aligned_cols=163 Identities=16% Similarity=0.115 Sum_probs=106.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCC-cceeeEEEEEEECCeEEEEEEEecCChhhhccc---------
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKST-IGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI--------- 77 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------- 77 (217)
....++|+|+|++|||||||+++|++.... ....++ .+.......+..++. .+.+|||||+..+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHHH
Confidence 345689999999999999999999987743 333333 344444445555653 5789999997654322
Q ss_pred --hhhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEe-CCCCccccccCH-------HHHHHHHHH
Q 042687 78 --TSAYYRGAVGALLVYDITKRQT-FDNVTRWLRELRDHADSNIVIMMAGN-KSDLNHLRAVAA-------EDAQILAEK 146 (217)
Q Consensus 78 --~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~~~ 146 (217)
...+++.+|++|+|+|+++... ...+..|+..+..... ..|+++++| |+|+... .+.. .++..+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 2236789999999999986222 2223334433322111 345666665 9999742 2211 234446666
Q ss_pred cCCe---E--EEecCCCCCCHHHHHHHHHHHHHH
Q 042687 147 EGLS---F--LETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 147 ~~~~---~--~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
.+.. + +++||+++.|++++|.+|.+.+..
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 5532 2 789999999999999999987754
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=1.5e-22 Score=166.91 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=103.4
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccch--------hhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT--------SAY 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~ 81 (217)
..++|+|+|++|||||||+|+|.+..+. ....++.+.+.....+.+++. .+.+|||||...+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3589999999999999999999987654 233344455555555667774 56799999976544332 235
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Q 042687 82 YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALN 161 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 161 (217)
+..+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+....... ....+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 789999999999998766544 34444442 47999999999997644332 111111 356899999999999
Q ss_pred HHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIY 174 (217)
Q Consensus 162 v~~~~~~l~~~~~ 174 (217)
+++++++|.+.+.
T Consensus 371 i~eL~~~i~~~~~ 383 (462)
T 3geh_A 371 IDSLETAILEIVQ 383 (462)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 145
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=1.5e-21 Score=155.79 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=100.8
Q ss_pred EEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc-CCCCeE
Q 042687 52 RTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVTRWLRELRDHA-DSNIVI 120 (217)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~ 120 (217)
..+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ ..++.....|+..+.... ..++|+
T Consensus 186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 3445553 678899999999999999999999999999999998 456888888888876642 247999
Q ss_pred EEEEeCCCCcccc---------------ccCHHHHHHHHH-----------HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 121 MMAGNKSDLNHLR---------------AVAAEDAQILAE-----------KEGLSFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 121 ivv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
+|++||+|+...+ ....+++..++. ..++.+++|||+++.|+.++|.++.+.+.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999985422 245677777776 35678999999999999999999999886
Q ss_pred HH
Q 042687 175 HI 176 (217)
Q Consensus 175 ~~ 176 (217)
+.
T Consensus 344 ~~ 345 (353)
T 1cip_A 344 KN 345 (353)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 146
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.87 E-value=2e-21 Score=152.50 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=106.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCC-CCCcceeeEEEEEEECCeEEEEEEEecCChh---------hhccchhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQE---------RYRAITSA 80 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 80 (217)
...+|+|+|++|||||||+|+|++..+.... .+..+.......+..++ ..+.+|||||.. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3468999999999999999999998765322 22222222222333343 467899999986 23344566
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCC
Q 042687 81 YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEA 159 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~ 159 (217)
++..+|++++|+|+++ - .....|+.... ...+.|+++++||+|+..........+..+...++. .++++||+++
T Consensus 85 ~l~~~D~vl~Vvd~~~-~--~~~~~~i~~~l--~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-W--TPDDEMVLNKL--REGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCCEEEEEEEEETTC-C--CHHHHHHHHHH--HSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHhcCCEEEEEEeCCC-C--CHHHHHHHHHH--HhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 7889999999999976 2 22223332221 123799999999999875222223445556666665 7999999999
Q ss_pred CCHHHHHHHHHHH
Q 042687 160 LNVEKAFQTILLD 172 (217)
Q Consensus 160 ~gv~~~~~~l~~~ 172 (217)
.|++++++++.+.
T Consensus 160 ~~v~~l~~~i~~~ 172 (301)
T 1ega_A 160 LNVDTIAAIVRKH 172 (301)
T ss_dssp TTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=6.6e-23 Score=168.73 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCC-CCCcceeeEEEEEEECCeEEEEEEEecCChh--------hhccchhhhhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQE--------RYRAITSAYYR 83 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~ 83 (217)
++|+|+|.+|||||||+|+|.+..+.... .+..+.+..... .......+.+|||||.+ .+...+..++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~--~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEE--CTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEE--EEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999987764322 222222333333 33333468899999975 56677778899
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNV 162 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv 162 (217)
.+|++|+|+|+.++.+.... .+...+.. .++|+++|+||+|+..... +..++. ..++ +++++||++|.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d~-~~~~~l~~---~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE-EVAKILYR---TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH-HHHHHHTT---CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCCh
Confidence 99999999999886554432 22222332 3799999999999865321 111122 3454 7899999999999
Q ss_pred HHHHHHHHHHHH
Q 042687 163 EKAFQTILLDIY 174 (217)
Q Consensus 163 ~~~~~~l~~~~~ 174 (217)
+++++++.+.+.
T Consensus 153 ~~L~~~i~~~l~ 164 (436)
T 2hjg_A 153 GDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHTGG
T ss_pred HHHHHHHHHhcC
Confidence 999999988663
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=2.3e-22 Score=155.96 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=93.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCcccc-CC-------CCCcceeeEEEEEEECCeEEEEEEEecCChh-------hh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL-ES-------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQE-------RY 74 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~-~~-------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~ 74 (217)
...++|+|+|.+|+|||||+|+|++..... .+ .+|.+.+.....+..++..+.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 356999999999999999999987765443 22 4555555555555556666789999999962 22
Q ss_pred ccch-------hhhhc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 75 RAIT-------SAYYR-------------GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 75 ~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
..+. ..++. .+|+++++++.+.......-..++..+.. ++|+++|+||+|+.....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 2222 33332 37899999987652211222334444433 799999999999864332
Q ss_pred cC--HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 135 VA--AEDAQILAEKEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 135 ~~--~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
.. ...+.......+++++++|+.++.|+++++++|.+.
T Consensus 162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 21 123455566778999999999999999999888764
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=3.5e-21 Score=158.54 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=107.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccc-----------
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI----------- 77 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 77 (217)
+..++|+|+|++|||||||+|+|.+.... ....++.+.+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 34589999999999999999999987653 222333344444556677776 4679999996432211
Q ss_pred -hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHH-HHHH----HcCCeE
Q 042687 78 -TSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQ-ILAE----KEGLSF 151 (217)
Q Consensus 78 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~ 151 (217)
...++..+|++++++|+++..+.... .+...+.. .++|+++++||+|+.+.+.....+.. .+.. ..++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 12456789999999999876554432 23333333 28999999999998764443333332 2222 235789
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHH
Q 042687 152 LETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 152 ~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
+++||++|.|++++|+.+.+.+.+
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999886654
No 150
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=2.7e-21 Score=147.72 Aligned_cols=164 Identities=14% Similarity=0.133 Sum_probs=104.9
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCC--cceeeEEEEEEECCeEEEEEEEecCCh--------hhhccchh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKST--IGVEFATRTLQVEGKTVKAQIWDTAGQ--------ERYRAITS 79 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~ 79 (217)
...++|+|+|.+|||||||+|+|++.........+ .+..........++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 46799999999999999999999998776544332 23333344455565 45779999995 33333333
Q ss_pred hhh----cCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc------CHHHHHHHHHHcC
Q 042687 80 AYY----RGAVGALLVYDITKRQT-FDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV------AAEDAQILAEKEG 148 (217)
Q Consensus 80 ~~~----~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~ 148 (217)
.++ +.+|++|+|+|+++... ...+..++..+......+.|++|++||.|+...... ....+..+...++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 333 89999999999975321 122233333332222236899999999999653211 0134677778888
Q ss_pred CeEEEecCCC-----CCCHHHHHHHHHHHHHH
Q 042687 149 LSFLETSALE-----ALNVEKAFQTILLDIYH 175 (217)
Q Consensus 149 ~~~~~vSa~~-----~~gv~~~~~~l~~~~~~ 175 (217)
..++.++... +.|++++++.|.+.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 8877776554 47888888888776644
No 151
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=5.8e-21 Score=152.26 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=93.6
Q ss_pred eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCC
Q 042687 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKS 127 (217)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~ 127 (217)
..+++++|||+|++.++..|..++++++++|+|||++ +.++++....|+..+.... ..++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 7788999888888877643 2479999999999
Q ss_pred CCccccc--c-------------------CHHHHHHHHHH----------------cCCeEEEecCCCCCCHHHHHHHHH
Q 042687 128 DLNHLRA--V-------------------AAEDAQILAEK----------------EGLSFLETSALEALNVEKAFQTIL 170 (217)
Q Consensus 128 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~vSa~~~~gv~~~~~~l~ 170 (217)
|+...+. + ..+++..++.. ..+.+++|||+++.||+++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854321 1 13455555432 124578999999999999999999
Q ss_pred HHHHHH
Q 042687 171 LDIYHI 176 (217)
Q Consensus 171 ~~~~~~ 176 (217)
+.+.+.
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988654
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=1.2e-23 Score=175.56 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=113.0
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEE
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v 91 (217)
.++|+|+|++++|||||+++|.+..+.....++.+.+.....+..++ ...+.+|||||++.|..++..++..+|++|+|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 47899999999999999999998877655555544444433333321 12578999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC-HHHHHHH---HHHc--CCeEEEecCCCCCCHHHH
Q 042687 92 YDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA-AEDAQIL---AEKE--GLSFLETSALEALNVEKA 165 (217)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~~vSa~~~~gv~~~ 165 (217)
+|+++....+..+.| ..+.. .++|+++++||+|+.+..... ..+...+ +..+ .++++++||++|.|++++
T Consensus 83 VDa~dg~~~qt~e~l-~~~~~---~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 83 VAADDGVMKQTVESI-QHAKD---AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp CBSSSCCCHHHHHHH-HHHHT---TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EECCCCccHHHHHHH-HHHHH---cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 999986555444333 23332 378999999999986432111 1122211 1112 257999999999999999
Q ss_pred HHHHHHHH
Q 042687 166 FQTILLDI 173 (217)
Q Consensus 166 ~~~l~~~~ 173 (217)
|++|...+
T Consensus 159 le~I~~l~ 166 (537)
T 3izy_P 159 AEATIALA 166 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998754
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=1.3e-21 Score=162.81 Aligned_cols=151 Identities=16% Similarity=0.122 Sum_probs=98.4
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc-------------------------------cCCCCCcceeeEEEEEEECCe
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-------------------------------LESKSTIGVEFATRTLQVEGK 59 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~~~ 59 (217)
..+||+++|++++|||||+++|++.... ....+..+.+.....+...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC--
Confidence 4699999999999999999999765110 0111122222333333333
Q ss_pred EEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHH------HHHHHHHHHhhcCCCCeEEEEEeCCCCcccc
Q 042687 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN------VTRWLRELRDHADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 133 (217)
.+.+.||||||++.|...+..++..+|++|+|+|+++...... ..+.+..+... . ..|+++|+||+|+.+.+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~-~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T-CCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C-CCcEEEEEECcCcccch
Confidence 3578899999999999999999999999999999998643221 22222222222 1 35699999999997633
Q ss_pred ccCHH----HHHHHHHHc-----CCeEEEecCCCCCCHHHH
Q 042687 134 AVAAE----DAQILAEKE-----GLSFLETSALEALNVEKA 165 (217)
Q Consensus 134 ~~~~~----~~~~~~~~~-----~~~~~~vSa~~~~gv~~~ 165 (217)
....+ ++..+.... +++++++||++|.|++++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 22222 233344333 357999999999999864
No 154
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.5e-22 Score=144.78 Aligned_cols=116 Identities=21% Similarity=0.341 Sum_probs=88.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccC---CCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcC-
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLE---SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG- 84 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~- 84 (217)
....++|+|+|++|||||||+++|.+..+... ..++.+.++ ..+.+.+||+||++.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 45678999999999999999999999876431 222222111 33467899999999888888777765
Q ss_pred ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCCcccc
Q 042687 85 ---AVGALLVYDIT-KRQTFDNVTRWLRELRDH----ADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 85 ---~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~ 133 (217)
+|++|+|||++ +++++..+..|+..+... ...++|+++|+||+|+...+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 899999988888776554 23489999999999997644
No 155
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=9.9e-21 Score=148.99 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=99.2
Q ss_pred EEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhc-CCCC
Q 042687 50 ATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVTRWLRELRDHA-DSNI 118 (217)
Q Consensus 50 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~ 118 (217)
....+.+++ +++++||++|++.++..|..++++++++|+|||++ +.+++.....|+..+.... ..++
T Consensus 158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 334445554 67899999999999999999999999999999665 5667777777777765543 2479
Q ss_pred eEEEEEeCCCCcccc----------------ccCHHHHHHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 119 VIMMAGNKSDLNHLR----------------AVAAEDAQILAE----------KEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 119 p~ivv~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
|+++++||+|+...+ ....+++..+.. ..++.+++|||+++.|++.+|..+.+.
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 999999999986533 356677777642 355778999999999999999999998
Q ss_pred HHHH
Q 042687 173 IYHI 176 (217)
Q Consensus 173 ~~~~ 176 (217)
+++.
T Consensus 316 Il~~ 319 (327)
T 3ohm_A 316 ILQL 319 (327)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8763
No 156
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.2e-22 Score=161.55 Aligned_cols=160 Identities=17% Similarity=0.309 Sum_probs=88.9
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccc-cCCC--------CCcceeeEEEEEEECCeEEEEEEEecCCh-------hhh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESK--------STIGVEFATRTLQVEGKTVKAQIWDTAGQ-------ERY 74 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~-~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~ 74 (217)
..++|+|+|++|+|||||+++|.+.... ..+. +|.+.......+..++..+.+++|||||. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4589999999999999999998765332 2221 33333333333444666778999999998 666
Q ss_pred ccchh-------hhhcCCcE-----------EEEEEeCCC-hhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 75 RAITS-------AYYRGAVG-----------ALLVYDITK-RQTFDNVT-RWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 75 ~~~~~-------~~~~~~d~-----------ii~v~d~~~-~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
..++. .++..+++ .+++|++++ ..++..+. .|+..+ ..++|+++|+||+|+...+.
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHH
Confidence 66665 55543332 234444443 33444443 344333 24799999999999976554
Q ss_pred cCH--HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 042687 135 VAA--EDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 135 ~~~--~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
+.. .++..++...+++++++||+++.+ ++.|.++.+.+.+
T Consensus 192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 433 456677777889999999999999 8889888887743
No 157
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=1.5e-21 Score=158.84 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=107.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCcc-------ccC--CC-----CCcceeeEEEEEEECCeEEEEEEEecCChhhhcc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEF-------CLE--SK-----STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA 76 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~-------~~~--~~-----~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (217)
+.++|+++|+.++|||||+++|.+... ... .+ ...+.+.......+......+.+|||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 358999999999999999999987411 000 00 0112222222223333335678999999999988
Q ss_pred chhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccccc---cCHHHHHHHHHHcC----
Q 042687 77 ITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRA---VAAEDAQILAEKEG---- 148 (217)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~---- 148 (217)
.+..++..+|++|+|+|+++....+..+.| ..+... ++| +++++||+|+..... ....++..++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888899999999999999985444433333 333333 788 789999999874221 11245666776665
Q ss_pred -CeEEEecCCCCCC----------HHHHHHHHHHHH
Q 042687 149 -LSFLETSALEALN----------VEKAFQTILLDI 173 (217)
Q Consensus 149 -~~~~~vSa~~~~g----------v~~~~~~l~~~~ 173 (217)
++++++||++|.| +.++++.|.+.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 667777665543
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=3.1e-21 Score=158.63 Aligned_cols=155 Identities=24% Similarity=0.233 Sum_probs=105.9
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccc--cC----------CCCC---------------------cceeeEEEEE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFC--LE----------SKST---------------------IGVEFATRTL 54 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~--~~----------~~~t---------------------~~~~~~~~~~ 54 (217)
.....++|+++|+.++|||||+++|++.... .. ...+ .+.+.....+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 3456799999999999999999999865311 00 0011 1112222223
Q ss_pred EECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-eEEEEEeCCCCcccc
Q 042687 55 QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNI-VIMMAGNKSDLNHLR 133 (217)
Q Consensus 55 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p~ivv~nK~Dl~~~~ 133 (217)
..++ ..+.+|||||++.|...+..++..+|++|+|+|+++....+. .+++..+... +. |+++|+||+|+.+..
T Consensus 100 ~~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~---~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 100 STAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL---GIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp ECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEEECTTTTTSC
T ss_pred ecCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEEcCcCCccc
Confidence 3333 568899999999998888889999999999999988643222 3344444333 44 699999999997521
Q ss_pred c--c--CHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHHH
Q 042687 134 A--V--AAEDAQILAEKEG-----LSFLETSALEALNVEKAFQT 168 (217)
Q Consensus 134 ~--~--~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~~~~~ 168 (217)
. . ...+...++..++ ++++++||++|.|+++++..
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 1 1 1345566677777 68999999999999986443
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.86 E-value=4.4e-21 Score=160.50 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=83.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCc------------------cccC----CCCCcceeeEEEEEEECCeEEEEEEEe
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNE------------------FCLE----SKSTIGVEFATRTLQVEGKTVKAQIWD 67 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~------------------~~~~----~~~t~~~~~~~~~~~~~~~~~~~~i~D 67 (217)
+...+|+|+|++|+|||||+++|+... .... ..+..+.......+...+ +.+++||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 456899999999999999999996211 1000 001122223333444454 5678999
Q ss_pred cCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 68 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
|||+..|...+..++..+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999987666665444 33333 3799999999999854
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=2.4e-21 Score=155.79 Aligned_cols=147 Identities=11% Similarity=0.088 Sum_probs=106.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEe
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 93 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d 93 (217)
+|+++|++++|||||+++|. ....|. +.....+..++ ..+.+|||||++.|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi--~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSS--DITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEES--SSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEE--EeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 112222 22223333333 468899999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEe-CCCCccccccCH--HHHHHHHHHc---CCeEEE--ecCCC---CCC
Q 042687 94 ITKRQTFDNVTRWLRELRDHADSNIVI-MMAGN-KSDLNHLRAVAA--EDAQILAEKE---GLSFLE--TSALE---ALN 161 (217)
Q Consensus 94 ~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~---~~~~~~--vSa~~---~~g 161 (217)
++ .......+++..+... ++|. ++++| |+|+ +.+.... +++..++... .+++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 54 3334445555555444 6777 88899 9999 5332222 3455555444 368999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 042687 162 VEKAFQTILLDIYHI 176 (217)
Q Consensus 162 v~~~~~~l~~~~~~~ 176 (217)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999876544
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=1.2e-21 Score=159.91 Aligned_cols=148 Identities=18% Similarity=0.139 Sum_probs=102.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC--------ccccC--CC-----CCcceeeEEEEEEECCeEEEEEEEecCChhhh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN--------EFCLE--SK-----STIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~--------~~~~~--~~-----~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (217)
...++|+++|++++|||||+++|.+. .+... .+ .+.+.+.......+......+.+|||||++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45699999999999999999999873 11110 00 01122222222333333356789999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccccc---cCHHHHHHHHHHcC--
Q 042687 75 RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRA---VAAEDAQILAEKEG-- 148 (217)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-- 148 (217)
...+..++..+|++|+|+|+++....+ ..+|+..+... ++| +++++||+|+..... ....++..++...+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 888888999999999999998865433 34455555443 788 889999999974221 11234566666665
Q ss_pred ---CeEEEecCCCCCC
Q 042687 149 ---LSFLETSALEALN 161 (217)
Q Consensus 149 ---~~~~~vSa~~~~g 161 (217)
++++++||++|.|
T Consensus 165 ~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 165 GDEVPVIRGSALLALE 180 (405)
T ss_dssp TTTSCEEECCHHHHHH
T ss_pred ccCCCEEEccHHHhhh
Confidence 6899999999977
No 162
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=1.6e-20 Score=159.00 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=104.9
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCC----CCcceeeEEEEE------------EECCeEEEEEEEecCChhhhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESK----STIGVEFATRTL------------QVEGKTVKAQIWDTAGQERYR 75 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~----~t~~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~~ 75 (217)
.++|+|+|+.++|||||+++|.+..+..... .+.+..+..... .++.....+++|||||++.|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 4799999999999999999998765533211 122211111000 000011247899999999999
Q ss_pred cchhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC-------------H--
Q 042687 76 AITSAYYRGAVGALLVYDITK---RQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA-------------A-- 137 (217)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-------------~-- 137 (217)
.++..++..+|++|+|+|+++ +++++.+. .+.. .++|+++++||+|+....... .
T Consensus 85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 85 TLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 999989999999999999998 56655443 2222 389999999999986422100 0
Q ss_pred -H-------HHHHHHHHcC---------------CeEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 138 -E-------DAQILAEKEG---------------LSFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 138 -~-------~~~~~~~~~~---------------~~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
. +........+ ++++++||++|.|+++++++|...+.
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 1111111222 37999999999999999999988664
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=2.4e-21 Score=159.29 Aligned_cols=154 Identities=17% Similarity=0.214 Sum_probs=102.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC--ccccC-----------------------------CCCCcceeeEEEEEEECCe
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN--EFCLE-----------------------------SKSTIGVEFATRTLQVEGK 59 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~--~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 59 (217)
..++|+++|+.++|||||+++|+.. .+... ..+..+.+.....+.. .
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~--~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET--K 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--S
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--C
Confidence 4589999999999999999999864 22111 0111222222222333 3
Q ss_pred EEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc----CCCC-eEEEEEeCCCCcccc-
Q 042687 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHA----DSNI-VIMMAGNKSDLNHLR- 133 (217)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~-p~ivv~nK~Dl~~~~- 133 (217)
.+.+.+|||||++.|...+..++..+|++|+|+|+++ .+++....|.....++. ..++ |+++++||+|+.+..
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 3568899999999999999999999999999999998 56664332222221111 1144 589999999997521
Q ss_pred -----ccCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Q 042687 134 -----AVAAEDAQILAEKEG-----LSFLETSALEALNVEKAFQ 167 (217)
Q Consensus 134 -----~~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~~~~ 167 (217)
....+++..++...+ ++++++||++|.|+.+++.
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112345667776665 6799999999999986654
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.83 E-value=5.1e-21 Score=158.13 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=101.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC--ccccC-----------------------------CCCCcceeeEEEEEEECCe
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN--EFCLE-----------------------------SKSTIGVEFATRTLQVEGK 59 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~--~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 59 (217)
..++|+++|++++|||||+++|++. .+... .....+.+.....+..++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~- 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK- 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC-
Confidence 5599999999999999999999864 11110 001122222223333343
Q ss_pred EEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCe-EEEEEeCCCCcc-
Q 042687 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVTRWLRELRDHADSNIV-IMMAGNKSDLNH- 131 (217)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~- 131 (217)
..+.+|||||++.|...+..++..+|++|+|+|+++... |+ ...+++..+... ++| +++++||+|+.+
T Consensus 85 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTT
T ss_pred -ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccccccC
Confidence 578899999999999989999999999999999987532 21 222222233322 565 899999999973
Q ss_pred -ccc--cCHHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 042687 132 -LRA--VAAEDAQILAEKEG-----LSFLETSALEALNVEKA 165 (217)
Q Consensus 132 -~~~--~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~~ 165 (217)
... ...+++..++...+ ++++++||++|.|+.++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 111 12234556666665 68999999999999754
No 165
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.83 E-value=3.2e-20 Score=138.17 Aligned_cols=156 Identities=19% Similarity=0.205 Sum_probs=99.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh----------hhccch
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE----------RYRAIT 78 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 78 (217)
.....+|+|+|++|||||||+++|.+..+.....++.+.......+.+++ .+.+||+||.. .+....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34568999999999999999999998764333344444443333333333 45699999963 223333
Q ss_pred hhhh---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCeEEEEEeCCCCccccc--cCHHHHHHHHHHcC--C
Q 042687 79 SAYY---RGAVGALLVYDITKRQTFDN--VTRWLRELRDHADSNIVIMMAGNKSDLNHLRA--VAAEDAQILAEKEG--L 149 (217)
Q Consensus 79 ~~~~---~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~ 149 (217)
..++ ..++++++++|++++.+... +..|+. . .+.|+++++||+|+....+ .....+..++...+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 3344 57899999999987654332 233332 2 2789999999999865321 11234555555554 5
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Q 042687 150 SFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 150 ~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
.++++|++++.|+++++++|.+.+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCHHHHHHHHHHHH
Confidence 788999999999999999998765
No 166
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=3.4e-21 Score=159.36 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCC--------hhhhccchhhhhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG--------QERYRAITSAYYR 83 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~ 83 (217)
..+|+|+|.+|||||||+|+|.+..+.... .+.+.+..............+.+||||| ++.+......++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 479999999999999999999987765222 2233334333444444445788999999 7778888888999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCC-eEEEecCCCCCCH
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGL-SFLETSALEALNV 162 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv 162 (217)
.+|++|+|+|..+..... ..|+..+... .++|+++|+||+|+.... ....++. ..+. .++++||++|.|+
T Consensus 102 ~ad~il~VvD~~~~~~~~--d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv 172 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAA--DEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGL 172 (456)
T ss_dssp HCSEEEEEEESSSCSCHH--HHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTH
T ss_pred hCCEEEEEEeCCCCCChH--HHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccch
Confidence 999999999987643322 2233332222 389999999999986422 1111111 2233 5689999999999
Q ss_pred HHHHHHHHHHH
Q 042687 163 EKAFQTILLDI 173 (217)
Q Consensus 163 ~~~~~~l~~~~ 173 (217)
+++++++.+.+
T Consensus 173 ~~L~~~i~~~l 183 (456)
T 4dcu_A 173 GDLLDAVAEHF 183 (456)
T ss_dssp HHHHHHHHTTG
T ss_pred HHHHHHHHhhc
Confidence 99999997754
No 167
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.83 E-value=1.6e-20 Score=166.27 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=105.7
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCcc-------cc-------CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhh
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEF-------CL-------ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~-------~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 74 (217)
..+.++|+++|+.++|||||+++|.+... .. ....+.+.+.....+.++.....+.+|||||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 34569999999999999999999986411 00 00112222222122233333457889999999999
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccccc---cCHHHHHHHHHHcC--
Q 042687 75 RAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLRA---VAAEDAQILAEKEG-- 148 (217)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-- 148 (217)
...+..++..+|++|+|+|+++....+. .+++..+... ++| ++|++||+|+.+... ...+++..++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 9888889999999999999988643332 3344444443 788 789999999975221 11245666776665
Q ss_pred ---CeEEEecCCCC--------CCHHHHHHHHHH
Q 042687 149 ---LSFLETSALEA--------LNVEKAFQTILL 171 (217)
Q Consensus 149 ---~~~~~vSa~~~--------~gv~~~~~~l~~ 171 (217)
++++++||++| .|+.++++.|.+
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 68999999999 346666666654
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=2.9e-21 Score=160.00 Aligned_cols=155 Identities=16% Similarity=0.151 Sum_probs=89.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC--ccccC-----------------------------CCCCcceeeEEEEEEECC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN--EFCLE-----------------------------SKSTIGVEFATRTLQVEG 58 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~--~~~~~-----------------------------~~~t~~~~~~~~~~~~~~ 58 (217)
...++|+++|+.++|||||+++|+.. .+... .....+.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45689999999999999999999752 21100 001111122222333343
Q ss_pred eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCcccc-
Q 042687 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLR- 133 (217)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~- 133 (217)
..+.+|||||++.|...+...+..+|++|+|+|+++.. +|+....|...+......++| ++|++||+|+....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 56889999999999998888999999999999999853 222111111111111122677 99999999995411
Q ss_pred -----ccCHHHHHHHHHHc-------CCeEEEecCCCCCCHHHHH
Q 042687 134 -----AVAAEDAQILAEKE-------GLSFLETSALEALNVEKAF 166 (217)
Q Consensus 134 -----~~~~~~~~~~~~~~-------~~~~~~vSa~~~~gv~~~~ 166 (217)
.....++..++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123456666555 4679999999999998866
No 169
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=6.4e-20 Score=144.89 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=93.3
Q ss_pred EEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCC
Q 042687 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVTRWLRELRDHA-DSNIVIMMAGNKSD 128 (217)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D 128 (217)
.+++++||++|++.++..|..++++++++|+|||++ +.+++.....|+..+.... ..++|++|++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 367899999999999999999999999999999998 6778888888887776543 35899999999999
Q ss_pred Cccccc---------------cCHHHHHHHHH-H--------------------------cCCeEEEecCCCCCCHHHHH
Q 042687 129 LNHLRA---------------VAAEDAQILAE-K--------------------------EGLSFLETSALEALNVEKAF 166 (217)
Q Consensus 129 l~~~~~---------------~~~~~~~~~~~-~--------------------------~~~~~~~vSa~~~~gv~~~~ 166 (217)
+...+. ...+++..++. . ..+.++++||+++.++..+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 853210 13445544332 2 24778999999999999999
Q ss_pred HHHHHHHHH
Q 042687 167 QTILLDIYH 175 (217)
Q Consensus 167 ~~l~~~~~~ 175 (217)
..+.+.+++
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1e-20 Score=160.89 Aligned_cols=150 Identities=16% Similarity=0.167 Sum_probs=100.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCC-------------------------------CCCcceeeEEEEEEECCe
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-------------------------------KSTIGVEFATRTLQVEGK 59 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~~~~~~~ 59 (217)
..++|+++|++|+|||||+++|++....... .+..+.+.....+...+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~- 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS-
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC-
Confidence 4689999999999999999999876332111 01222233333333443
Q ss_pred EEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHHhhcCCC-CeEEEEEeCCCCccc
Q 042687 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---F---DNVTRWLRELRDHADSN-IVIMMAGNKSDLNHL 132 (217)
Q Consensus 60 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~-~p~ivv~nK~Dl~~~ 132 (217)
+.+.||||||++.|...+..++..+|++|+|+|+++... + ......+..+... + .|++||+||+|+.+.
T Consensus 245 -~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l---gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 245 -ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp -CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT---TCCEEEEEEECTTTTTT
T ss_pred -ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc---CCCeEEEEEecccccch
Confidence 567899999999999999999999999999999987421 0 1112222222222 4 459999999999752
Q ss_pred cccC----HHHHHHHHHHcC-----CeEEEecCCCCCCHHHH
Q 042687 133 RAVA----AEDAQILAEKEG-----LSFLETSALEALNVEKA 165 (217)
Q Consensus 133 ~~~~----~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~~ 165 (217)
.... ..++..+....+ ++++++||++|.|+.++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2211 223444444443 58999999999999876
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=3.7e-21 Score=150.83 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=102.7
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCccccCC------CCC----------------------ccee-----------
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLES------KST----------------------IGVE----------- 48 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~------~~t----------------------~~~~----------- 48 (217)
+....++|+|+|.+|||||||+|+|++..+.+.. .++ .+.+
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3446689999999999999999999998874221 121 0000
Q ss_pred ------------eEEEEEEECCeEEEEEEEecCChh-------------hhccchhhhhcCCcEEE-EEEeCCChhhHHH
Q 042687 49 ------------FATRTLQVEGKTVKAQIWDTAGQE-------------RYRAITSAYYRGAVGAL-LVYDITKRQTFDN 102 (217)
Q Consensus 49 ------------~~~~~~~~~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~ 102 (217)
.....+... ....+.+|||||.. .+..+...++..++.+| +|+|+++..+...
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~ 180 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH
T ss_pred HhcccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH
Confidence 000000111 02468899999953 45566677888888776 6999987544333
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHH--cC-CeEEEecCCCCCCHHHHHHHHHH
Q 042687 103 VTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK--EG-LSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 103 ~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
...++..+. ..+.|+++|+||+|+.+........+...... .+ .+++++||++|.|++++|++|.+
T Consensus 181 ~~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 181 ALKIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 334444443 34789999999999975433222222210001 12 36889999999999999999876
No 172
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=3.7e-22 Score=165.25 Aligned_cols=155 Identities=17% Similarity=0.241 Sum_probs=105.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~ 90 (217)
..++|+++|+.++|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||++.|..++...+..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 347899999999999999999988665443333222222222223344 357799999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc--ccCHH--HHHHHHHHcC--CeEEEecCCCCCCHHH
Q 042687 91 VYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR--AVAAE--DAQILAEKEG--LSFLETSALEALNVEK 164 (217)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~~vSa~~~~gv~~ 164 (217)
|+|+++....+..+. +..+.. .++|+++++||+|+.... .+... +...++..++ ++++++||++|.|+++
T Consensus 81 VVda~~g~~~qT~e~-l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 81 VVAADDGVMPQTIEA-IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEETTTBSCTTTHHH-HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EeecccCccHHHHHH-HHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 999987322222222 222222 278999999999996421 11100 0001112222 6899999999999999
Q ss_pred HHHHHHH
Q 042687 165 AFQTILL 171 (217)
Q Consensus 165 ~~~~l~~ 171 (217)
+|++|..
T Consensus 157 Lle~I~~ 163 (501)
T 1zo1_I 157 LLDAILL 163 (501)
T ss_dssp HHHHTTT
T ss_pred hhhhhhh
Confidence 9999864
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=1.6e-19 Score=155.27 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=82.1
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCC----------------CcceeeEEEEEEECCeEEEEEEEecCChh
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKS----------------TIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 72 (217)
.+...+|+|+|+.|+|||||+++|.+......... ..+.++......+....+.+++|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 45668999999999999999999985332211000 01122222222222234678899999999
Q ss_pred hhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
.|...+..++..+|++++|+|+++...... ..++..+... ++|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence 998889999999999999999877544333 2444444443 79999999999986
No 174
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.81 E-value=5e-19 Score=152.77 Aligned_cols=165 Identities=15% Similarity=0.175 Sum_probs=109.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCC-CCCcce--------eeE-------------------------------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGV--------EFA------------------------------- 50 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~-~~t~~~--------~~~------------------------------- 50 (217)
..++|+|+|.+|+|||||+|+|.+..+.+.. .+++.. ...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4689999999999999999999988765432 232210 000
Q ss_pred --------------EEEEEECCeE--EEEEEEecCChhh---hccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 042687 51 --------------TRTLQVEGKT--VKAQIWDTAGQER---YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELR 111 (217)
Q Consensus 51 --------------~~~~~~~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~ 111 (217)
...+...... ..+.+|||||... ....+..++..+|++|+|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0000111000 2478999999654 34456678899999999999998877776665654443
Q ss_pred hhcCCCCeEEEEEeCCCCccccccCH---H-------HHHH-----HHHH--------cCCeEEEecCC-----------
Q 042687 112 DHADSNIVIMMAGNKSDLNHLRAVAA---E-------DAQI-----LAEK--------EGLSFLETSAL----------- 157 (217)
Q Consensus 112 ~~~~~~~p~ivv~nK~Dl~~~~~~~~---~-------~~~~-----~~~~--------~~~~~~~vSa~----------- 157 (217)
. .+.|+++|+||+|+........ + .+.. +... ...+++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 3 2678999999999865331111 0 1111 1111 12469999999
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHH
Q 042687 158 ---EALNVEKAFQTILLDIYHIIS 178 (217)
Q Consensus 158 ---~~~gv~~~~~~l~~~~~~~~~ 178 (217)
++.|+++++.+|.+.+.+...
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~~~~ 328 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTRERA 328 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred hhhhccCHHHHHHHHHHHHHHhHH
Confidence 999999999999987765433
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.80 E-value=2.4e-19 Score=154.71 Aligned_cols=123 Identities=22% Similarity=0.202 Sum_probs=89.0
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcCccc--------c------------CCCCCcceeeEEEEEEECCeE
Q 042687 1 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFC--------L------------ESKSTIGVEFATRTLQVEGKT 60 (217)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~--------~------------~~~~t~~~~~~~~~~~~~~~~ 60 (217)
|+.....+.+...+|+|+|+.|+|||||+++|+..... . ....| .......+...+
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giT--i~~~~~~~~~~~-- 76 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGIT--ITAAVTTCFWKD-- 76 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETT--
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccc--cccceEEEEECC--
Confidence 56555666778899999999999999999999842110 0 11112 122222333343
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
+.+++|||||+..|...+..++..+|++|+|+|+++..+......|.. +... ++|+++++||+|+..
T Consensus 77 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---KVPRIAFANKMDKTG 143 (691)
T ss_dssp EEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred eEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 578899999999999899999999999999999998777766655543 3332 899999999999854
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.80 E-value=1.5e-20 Score=159.44 Aligned_cols=150 Identities=22% Similarity=0.200 Sum_probs=82.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccc-------------------------------cCCCCCcceeeEEEEEEEC
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFC-------------------------------LESKSTIGVEFATRTLQVE 57 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 57 (217)
....++|+|+|++++|||||+++|+..... ....+.++.+.....+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 346689999999999999999999642111 001112222222223333
Q ss_pred CeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCe-EEEEEeCCCCc
Q 042687 58 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TF---DNVTRWLRELRDHADSNIV-IMMAGNKSDLN 130 (217)
Q Consensus 58 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~ 130 (217)
....+.||||||++.|...+...+..+|++|+|+|+++.. .+ ......+..+... ++| +++|+||+|+.
T Consensus 253 -~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 -DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred -CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccc
Confidence 3357889999999999998888999999999999998532 11 1111222223322 665 89999999986
Q ss_pred cccccC----HHHHHHHH-HHcCC-----eEEEecCCCCCCHH
Q 042687 131 HLRAVA----AEDAQILA-EKEGL-----SFLETSALEALNVE 163 (217)
Q Consensus 131 ~~~~~~----~~~~~~~~-~~~~~-----~~~~vSa~~~~gv~ 163 (217)
...... ..++..+. ...++ +++++||++|.|+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 521111 12334444 33443 79999999999998
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.79 E-value=2e-18 Score=132.98 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=83.4
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCcccc-CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhc------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR------ 83 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------ 83 (217)
..++|+|+|..|+|||||+++|.+..+.. ...++.+.......+..++. .+.+|||||+..+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 46999999999999999999999987532 22232233444455556664 6789999998776655444443
Q ss_pred ---CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC--CeEEEEEeCCCCccc
Q 042687 84 ---GAVGALLVYDITKRQTFDNV-TRWLRELRDHADSN--IVIMMAGNKSDLNHL 132 (217)
Q Consensus 84 ---~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~ 132 (217)
.+|++++|++++... +... ..|+..+......+ .|+++|+||+|+...
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999987644 3322 45666666654323 489999999998543
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.79 E-value=1.7e-18 Score=140.75 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhh----hccchhh---hhcCCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----YRAITSA---YYRGAV 86 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~---~~~~~d 86 (217)
.|+|+|++|||||||+++|.+........+..+.......+..++ ...+.+||+||... +..+... .+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 489999999999999999988754322222222223333344443 23577999999632 2222222 345799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 042687 87 GALLVYDITKRQTFDNVTRWLRELRDHAD--SNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 164 (217)
.+++++|++ ...+..+..|...+..... ...|.++++||+|+... ....++.......+++++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 5566777666666554431 25789999999998763 223344555556678999999999999999
Q ss_pred HHHHHHHHHHH
Q 042687 165 AFQTILLDIYH 175 (217)
Q Consensus 165 ~~~~l~~~~~~ 175 (217)
++++|.+.+.+
T Consensus 315 L~~~i~~~l~~ 325 (416)
T 1udx_A 315 LKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=1.5e-18 Score=145.35 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=78.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCC--------------------CCCccee--eEEEEEEECCeEEEEEEEe
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLES--------------------KSTIGVE--FATRTLQVEGKTVKAQIWD 67 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~--------------------~~t~~~~--~~~~~~~~~~~~~~~~i~D 67 (217)
...++|+|+|++|+|||||+++|+........ ..+.+.+ .....+...+ +.+++||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 45689999999999999999999863211100 0011111 1122333344 5788999
Q ss_pred cCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 68 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
|||+..|...+..++..+|++|+|+|+++...... ..++..+. ..++|+++++||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 99999998888889999999999999987543222 23333332 23899999999999854
No 180
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.78 E-value=1.8e-19 Score=141.35 Aligned_cols=134 Identities=17% Similarity=0.142 Sum_probs=110.5
Q ss_pred HHHhHHhcCccc-cCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChh-hHHHHH
Q 042687 27 NILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ-TFDNVT 104 (217)
Q Consensus 27 tLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~ 104 (217)
+|+.+++.+.|. ..+.+|.+..+. ..+..++ ++.+||+ ++.++.++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688999999998 788899885544 3322233 6789999 8999999999999999999999999987 788889
Q ss_pred HHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHH
Q 042687 105 RWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEG--LSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 105 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
.|+..+... ++|+++|+||+|+.+.+.+ ++...++..++ ++++++||++|.|++++|.++..
T Consensus 106 ~~l~~~~~~---~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEKN---ELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHT---TCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHC---CCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 999877653 8999999999999764432 45667777777 89999999999999999998764
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=1.9e-19 Score=144.70 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=105.6
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEE--------------------------------------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATR-------------------------------------- 52 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~-------------------------------------- 52 (217)
...+|+|+|++|||||||+++|.+..+.+....+.+......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 445999999999999999999999776433322211000000
Q ss_pred --------------EEEE-CCeEEEEEEEecCChhhh-------------ccchhhhhcCCcEEEEEEeCCChhhHHHHH
Q 042687 53 --------------TLQV-EGKTVKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITKRQTFDNVT 104 (217)
Q Consensus 53 --------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 104 (217)
.+.+ ......+.+|||||...+ ..+...++..+|++|+|+|.++..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000 001125789999997654 556678899999999999876533221 3
Q ss_pred HHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 105 RWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 105 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
.|+..+......+.|+++|+||+|+..........+..+....+.+++++++.++.++++.+.++..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 4444555555558899999999999765544444444445556788999999998888776555433
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=1.7e-19 Score=141.42 Aligned_cols=160 Identities=15% Similarity=0.249 Sum_probs=85.1
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC-ccccCC--------CCCcceeeEEEEEEECCeEEEEEEEecCCh-------hh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN-EFCLES--------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQ-------ER 73 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~ 73 (217)
...++|+|+|++|||||||+++|.+. .++... .++.........+..++....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999998875 443322 112111111222223444568899999997 44
Q ss_pred hccchh-------hhhc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc
Q 042687 74 YRAITS-------AYYR-------------GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 74 ~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 133 (217)
+..+.. .++. .+++++++.+++.. +++.+. ...+.... ...|+++|+||+|+...+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence 444443 3332 23445555554321 122221 12223322 268999999999987544
Q ss_pred cc--CHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 134 AV--AAEDAQILAEKEGLSFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 134 ~~--~~~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
++ ..+++..++...+++++++||+++ |++++|.++.+.+.
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 32 235678888889999999999999 99999999988764
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.76 E-value=2.5e-17 Score=142.33 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=83.9
Q ss_pred CCCceeeEEEEEcCCCCCHHHHHhHHhcCc--cccC-----------C-----CCCcceeeEEEEEEEC-----CeEEEE
Q 042687 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNE--FCLE-----------S-----KSTIGVEFATRTLQVE-----GKTVKA 63 (217)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKstLi~~l~~~~--~~~~-----------~-----~~t~~~~~~~~~~~~~-----~~~~~~ 63 (217)
.+.+...+|+|+|+.|+|||||+++|+... +... + ....+.......+... +..+.+
T Consensus 5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i 84 (704)
T 2rdo_7 5 TPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRI 84 (704)
T ss_pred CCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeE
Confidence 344567899999999999999999997531 1100 0 0111111112222222 234788
Q ss_pred EEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 64 ~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
+||||||+..|...+..++..+|++|+|+|+++.........|. .... .++|+++++||+|+..
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCccc
Confidence 99999999999888999999999999999999876555544443 2322 3799999999999853
No 184
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.76 E-value=1.4e-17 Score=134.31 Aligned_cols=126 Identities=15% Similarity=0.172 Sum_probs=100.6
Q ss_pred EEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc-CCCCeE
Q 042687 52 RTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVTRWLRELRDHA-DSNIVI 120 (217)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~ 120 (217)
..+.+++ +++++|||+|++.++..|..++++++++|+|||+++ ..++.....|+..+.... ..++|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 4455665 788999999999999999999999999999999999 889999999999887653 357999
Q ss_pred EEEEeCCCCccccc---c---------------------------CHHHHHHHH-----HH--------cCCeEEEecCC
Q 042687 121 MMAGNKSDLNHLRA---V---------------------------AAEDAQILA-----EK--------EGLSFLETSAL 157 (217)
Q Consensus 121 ivv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~vSa~ 157 (217)
+||+||+|+...+. . ..+++..++ .. .++.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999854322 1 134555553 22 24678899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 042687 158 EALNVEKAFQTILLDIYHIISK 179 (217)
Q Consensus 158 ~~~gv~~~~~~l~~~~~~~~~~ 179 (217)
++.||+++|.++.+.+.+...+
T Consensus 368 d~~nV~~vF~~v~~~I~~~~l~ 389 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRMHLR 389 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888665433
No 185
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.76 E-value=6.5e-18 Score=135.19 Aligned_cols=124 Identities=18% Similarity=0.212 Sum_probs=93.7
Q ss_pred EEEEEECCeEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc-CCCCe
Q 042687 51 TRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVTRWLRELRDHA-DSNIV 119 (217)
Q Consensus 51 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p 119 (217)
...+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ ..++.....|+..+.... ..++|
T Consensus 193 ~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 193 EYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp EEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence 34455554 678899999999999999999999999999999999 678998888888876642 34799
Q ss_pred EEEEEeCCCCcccc----------------ccCHHHHHHHHH-----------HcCCeEEEecCCCCCCHHHHHHHHHHH
Q 042687 120 IMMAGNKSDLNHLR----------------AVAAEDAQILAE-----------KEGLSFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 120 ~ivv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
++|++||+|+...+ ....+++..++. ..++.+++|||+++.|++++|.++.+.
T Consensus 271 iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 271 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 99999999985422 245667766652 345789999999999999999999998
Q ss_pred HHHH
Q 042687 173 IYHI 176 (217)
Q Consensus 173 ~~~~ 176 (217)
+.+.
T Consensus 351 i~~~ 354 (362)
T 1zcb_A 351 ILHD 354 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 186
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=2.6e-18 Score=135.57 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=68.0
Q ss_pred EEEEEEecCChhh-------------hccchhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 042687 61 VKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITKRQ-TFDNVTRWLRELRDHADSNIVIMMAGNK 126 (217)
Q Consensus 61 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK 126 (217)
..+.+|||||... +......++..+|++|+|+|.++.. .......++..+. ..+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcC
Confidence 3588999999642 4556677889999999999974432 1111112233332 347899999999
Q ss_pred CCCccccccCHHHHHHHHHHcCCeEEEecCC---C---CCCHHHHHHHHHHHH
Q 042687 127 SDLNHLRAVAAEDAQILAEKEGLSFLETSAL---E---ALNVEKAFQTILLDI 173 (217)
Q Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~---~---~~gv~~~~~~l~~~~ 173 (217)
+|+..........+.......+..++++++. + +.|+.++++.+.+.+
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 9987544322222221111222566776554 4 688888888877665
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=6.3e-18 Score=130.68 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=79.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCC-CCCcceeeEEEEEEECCeEEEEEEEecCChhhhccchh-------hh-
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES-KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITS-------AY- 81 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~- 81 (217)
..++|+++|.+|+|||||+|+|++..+.... .+..+.......+..++ +.+.+|||||...+..... .+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 4699999999999999999999988763222 12222223233333444 5688999999865543222 12
Q ss_pred -hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC--CeEEEEEeCCCCcccc
Q 042687 82 -YRGAVGALLVYDITKRQTFDNV-TRWLRELRDHADSN--IVIMMAGNKSDLNHLR 133 (217)
Q Consensus 82 -~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~ 133 (217)
...+|++++|+|++.. ++... ..|+..+......+ .|+++|+||+|+...+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2479999999998653 23322 46666666554323 7999999999986544
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=139.91 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=81.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCC--------CCCcceeeEEEEEEECCeEEEEEEEecCChhhhc------
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLES--------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR------ 75 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------ 75 (217)
...++|+|+|++|||||||++.|++..+.... .++.........+...+....+++||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34578999999999999999999987763221 1121111111112223444578999999965431
Q ss_pred -cc------------------hhhhhcCCcEEEEEEeCCCh-hhHHHH-HHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 76 -AI------------------TSAYYRGAVGALLVYDITKR-QTFDNV-TRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 76 -~~------------------~~~~~~~~d~ii~v~d~~~~-~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
.+ ...++.++++.+++|+.... .++... ..|+..+. . ++|+++|+||+|+...+.
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~-~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E-KVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---T-TSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---c-cCcEEEEEEcccCccHHH
Confidence 11 12234455544444444321 233333 25555553 2 799999999999876554
Q ss_pred cCH--HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 135 VAA--EDAQILAEKEGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 135 ~~~--~~~~~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
+.. .++...+...+++++++|+.++.+++++|..+.+
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 443 5677778888999999999999999988777665
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=1.7e-18 Score=140.34 Aligned_cols=85 Identities=22% Similarity=0.236 Sum_probs=47.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEE--EE-------------------EECC-eEEEEEEEecCC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATR--TL-------------------QVEG-KTVKAQIWDTAG 70 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~--~~-------------------~~~~-~~~~~~i~D~~G 70 (217)
++|+|+|.+|||||||+|+|++........+..+.+.... .+ .+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998773222222112211111 11 1222 246799999999
Q ss_pred hhh----hccchh---hhhcCCcEEEEEEeCCCh
Q 042687 71 QER----YRAITS---AYYRGAVGALLVYDITKR 97 (217)
Q Consensus 71 ~~~----~~~~~~---~~~~~~d~ii~v~d~~~~ 97 (217)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 743 222222 456899999999999875
No 190
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=4.9e-17 Score=140.34 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=83.6
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcC--cccc-----------CC-----CCCcceeeEEEEEEECCeEEEEEEEecC
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRN--EFCL-----------ES-----KSTIGVEFATRTLQVEGKTVKAQIWDTA 69 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~--~~~~-----------~~-----~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (217)
+.+...+|+|+|++|+|||||+++|+.. .+.. ++ .+..+.......+..++ +.+++||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence 3456789999999999999999999852 2110 00 01111112223334444 568899999
Q ss_pred ChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 70 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
|+..|...+..++..+|++|+|+|+++..+......|.. +... ++|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 999998888999999999999999998776666555543 3333 789999999999854
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.70 E-value=1.8e-17 Score=124.19 Aligned_cols=155 Identities=10% Similarity=0.039 Sum_probs=94.6
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCC------CCCcce--------eeEEEEEEEC----------------CeE
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES------KSTIGV--------EFATRTLQVE----------------GKT 60 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~------~~t~~~--------~~~~~~~~~~----------------~~~ 60 (217)
...+|+|+|.+|||||||+++|......... .+..+. ......+... ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 3479999999999999999999865321110 111000 0011111110 112
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHH
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDA 140 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (217)
..+.+|||+|..... ..+....+.+++|+|+.+... ....+... . +.|+++|+||+|+.........+.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 457799999851111 011125688999999876432 11111111 1 578899999999865433345556
Q ss_pred HHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 042687 141 QILAEKE--GLSFLETSALEALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 141 ~~~~~~~--~~~~~~vSa~~~~gv~~~~~~l~~~~~~~ 176 (217)
...+... +++++++||++|.|++++|++|.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 5555544 47899999999999999999999877543
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.70 E-value=2e-16 Score=133.09 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=81.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCcc------------------c----cCCCCCcceeeEEEEEEECCeEEEEEEEe
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEF------------------C----LESKSTIGVEFATRTLQVEGKTVKAQIWD 67 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~------------------~----~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 67 (217)
...-+|+|+|+.++|||||..+|+...- . .+.....++.-....+..++ +.++|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 3567999999999999999999852110 0 01111122222233344454 5678999
Q ss_pred cCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q 042687 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNH 131 (217)
Q Consensus 68 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 131 (217)
||||..|.......++-+|++|+|+|+...-..+....|. ..... ++|.++++||+|...
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHHT---TCCEEEEEECTTSCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHHh---CCceEEEEecccchh
Confidence 9999999999999999999999999998865555544553 33333 899999999999743
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.69 E-value=1.8e-18 Score=138.69 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=93.1
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCC------CCc----------------------cee--------------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK------STI----------------------GVE-------------- 48 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~------~t~----------------------~~~-------------- 48 (217)
..++|+|+|.+|||||||+|+|++..+.+... ++. +.+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999987743221 110 000
Q ss_pred -------eEEEEEEEC-CeEEEEEEEecCChh-------------hhccchhhhhcCCcEEE-EEEeCCChhhHHHHHHH
Q 042687 49 -------FATRTLQVE-GKTVKAQIWDTAGQE-------------RYRAITSAYYRGAVGAL-LVYDITKRQTFDNVTRW 106 (217)
Q Consensus 49 -------~~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~ 106 (217)
.....+.+. .....+.+|||||.. .+..+...|+..++.+| ++.|++....-.. |
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---A 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---H
Confidence 000001111 012468899999952 34556667776665444 4556554222122 2
Q ss_pred HHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHH--HHHHcC-CeEEEecCCCCCCHHHHHHHHHH
Q 042687 107 LRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQI--LAEKEG-LSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 107 ~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
+..+......+.|+++|+||+|+.+........... +....+ .+++++||+++.|++++++++.+
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 222333344589999999999996533211211111 011123 25788999999999999888866
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=9.1e-16 Score=122.23 Aligned_cols=146 Identities=18% Similarity=0.121 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCe---------------EEEEEEEecCChhhhc--
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK---------------TVKAQIWDTAGQERYR-- 75 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-- 75 (217)
++|+|+|.+|||||||+|+|.+..+.....+..+.+.....+.+.+. +..+.+|||||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 78999999999999999999987743322222122222222334432 2468899999976532
Q ss_pred -----cchhhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHH------------------------------
Q 042687 76 -----AITSAYYRGAVGALLVYDITKR----------QTFDNVTRWLREL------------------------------ 110 (217)
Q Consensus 76 -----~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i------------------------------ 110 (217)
..+..+++.+|++++|+|+++. +++..+..+..++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 2233457899999999999852 2233322111111
Q ss_pred ----------Hh-------------------h-cCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecCCC
Q 042687 111 ----------RD-------------------H-ADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSALE 158 (217)
Q Consensus 111 ----------~~-------------------~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 158 (217)
.+ . ....+|+++++|+.|..-........+..++...+++++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 10 0 012499999999999642112234567778888899999999663
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.67 E-value=7.1e-17 Score=129.40 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=70.0
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC--HH
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA--AE 138 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~ 138 (217)
+.+.||||||... .....+..+|++|+|+|....+.+..+... -.+.|+++|+||+|+....... ..
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 4678999999432 223445899999999998765443322211 1146899999999986532211 11
Q ss_pred HHHHHHHH-------cCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 042687 139 DAQILAEK-------EGLSFLETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 139 ~~~~~~~~-------~~~~~~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
+....... ++.+++++||++|.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 22222211 25789999999999999999999988755
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.66 E-value=1.8e-18 Score=130.17 Aligned_cols=153 Identities=13% Similarity=0.121 Sum_probs=89.6
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeE------------EEEEEEC-CeEE----------------
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFA------------TRTLQVE-GKTV---------------- 61 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~------------~~~~~~~-~~~~---------------- 61 (217)
..++|+|+|.+|||||||+++|....+...+.++.+.++. ...+.++ +..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3589999999999999999999987654433333332221 1111111 1100
Q ss_pred ---EEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHH
Q 042687 62 ---KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAE 138 (217)
Q Consensus 62 ---~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 138 (217)
.+.++|++|.-... ..+-...+.++.+.|......... .....+ +.|.++|+||+|+...+....+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence 23455555521000 011112344556666422111000 000111 5678999999998764444566
Q ss_pred HHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 139 DAQILAEKE--GLSFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 139 ~~~~~~~~~--~~~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
+...++... +++++++||++|.|++++|++|.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 666666654 579999999999999999999988764
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.65 E-value=4.4e-16 Score=136.99 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=86.6
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccC----------------CC--CCcceeeEEEEEE------------ECC
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLE----------------SK--STIGVEFATRTLQ------------VEG 58 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~----------------~~--~t~~~~~~~~~~~------------~~~ 58 (217)
.+...+|+|+|+.++|||||+++|+....... .. .|.........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 34568999999999999999999986421110 01 1222222222222 234
Q ss_pred eEEEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 59 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
..+.+++|||||+..|...+..+++.+|++|+|+|+++..+++....|.... . .++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence 4788999999999999999999999999999999999987777766565433 2 278999999999986
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.65 E-value=2.8e-16 Score=132.26 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=83.1
Q ss_pred CCCCceeeEEEEEcCCCCCHHHHHhHHhcCccc---cCCCCCcceeeEEEEEE------EC-------------------
Q 042687 6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFC---LESKSTIGVEFATRTLQ------VE------------------- 57 (217)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKstLi~~l~~~~~~---~~~~~t~~~~~~~~~~~------~~------------------- 57 (217)
+.+.+..++|+|+|.+|+|||||+|+|++..+. ....+++. ........ .+
T Consensus 59 ~~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~-~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~ 137 (550)
T 2qpt_A 59 DADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD-CFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGN 137 (550)
T ss_dssp STTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC-SEEEEECCSSSEEECCC------------------
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc-eEEEEEECCcccccCCceeeecCcccHHHHhhhcc
Confidence 344556789999999999999999999998764 22222221 11000000 00
Q ss_pred ----CeE---------EEEEEEecCChhh-----------hccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q 042687 58 ----GKT---------VKAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDH 113 (217)
Q Consensus 58 ----~~~---------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~ 113 (217)
+.. ..+.+|||||... +......++..+|++|+|+|+++.........|+..+...
T Consensus 138 ~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~ 217 (550)
T 2qpt_A 138 TFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH 217 (550)
T ss_dssp CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred cccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence 000 2478999999753 4456667789999999999998754444555666555433
Q ss_pred cCCCCeEEEEEeCCCCcccc
Q 042687 114 ADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 114 ~~~~~p~ivv~nK~Dl~~~~ 133 (217)
+.|+++|+||+|+....
T Consensus 218 ---~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 218 ---EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp ---GGGEEEEEECGGGSCHH
T ss_pred ---CCCEEEEEECCCccCHH
Confidence 68999999999987533
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=125.32 Aligned_cols=103 Identities=11% Similarity=-0.005 Sum_probs=63.0
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHH
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDA 140 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (217)
+.+.++||+|.... .......+|++++|+|++++...+.+.. .+ ...|.++|+||+|+...... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 35679999995311 2344678999999999987543322211 11 14678999999998642111 0112
Q ss_pred HHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Q 042687 141 QILAE----------KEGLSFLETSALEALNVEKAFQTILLDIYH 175 (217)
Q Consensus 141 ~~~~~----------~~~~~~~~vSa~~~~gv~~~~~~l~~~~~~ 175 (217)
..+.. .+..+++.+||++|.|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 22211 124578999999999999999999987644
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.62 E-value=2.2e-15 Score=120.66 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECC-------------------eEEEEEEEecCChhh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG-------------------KTVKAQIWDTAGQER 73 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 73 (217)
++|+|+|.+|||||||+|+|.+........+..+.........+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999988653222111111111111222221 235688999999764
Q ss_pred hc-------cchhhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHH---------------------------
Q 042687 74 YR-------AITSAYYRGAVGALLVYDITKR----------QTFDNVTRWLRE--------------------------- 109 (217)
Q Consensus 74 ~~-------~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~--------------------------- 109 (217)
.. ......++.+|++++|+|+++. +.+..+..+...
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 32 1233457899999999999751 122221110000
Q ss_pred ------------HHhhc--------------------CCCCeEEEEEeCCCCc--cc-cccCHHHHHHHHHHcCCeEEEe
Q 042687 110 ------------LRDHA--------------------DSNIVIMMAGNKSDLN--HL-RAVAAEDAQILAEKEGLSFLET 154 (217)
Q Consensus 110 ------------i~~~~--------------------~~~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~v 154 (217)
+.... -..+|+++++||.|.. +. +......+..++...+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 00000 1137999999999843 21 1223456778888889999999
Q ss_pred cCCCCCCHHHHHH
Q 042687 155 SALEALNVEKAFQ 167 (217)
Q Consensus 155 Sa~~~~gv~~~~~ 167 (217)
||+.+.++.++..
T Consensus 242 SAk~E~el~eL~~ 254 (368)
T 2dby_A 242 SARLEAELAELSG 254 (368)
T ss_dssp CHHHHHHHHTSCH
T ss_pred echhHHHHHHhch
Confidence 9998766665544
No 201
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.1e-14 Score=113.30 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=98.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhh-------ccchhhhh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY-------RAITSAYY 82 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~ 82 (217)
+...+|+|+|.||||||||+|+|.+........+..+.+.....+.+.+. +++++||||...- .......+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 34568999999999999999999987755444455566677777778875 5679999994211 11123456
Q ss_pred cCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc--------ccccCHHHHHHHHHHcCCeEEE
Q 042687 83 RGAVGALLVYDITKRQTF-DNVTRWLRELRDHADSNIVIMMAGNKSDLNH--------LRAVAAEDAQILAEKEGLSFLE 153 (217)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~ 153 (217)
+.+|++++|+|++++... +.+...+..+.... ...|.++++||.|... ......++...+...+.+..-+
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 789999999999987432 22233332222112 2577888999999732 1234556666666666543223
Q ss_pred ecCCCCCCHHHHHH
Q 042687 154 TSALEALNVEKAFQ 167 (217)
Q Consensus 154 vSa~~~~gv~~~~~ 167 (217)
+--..+...+++.+
T Consensus 227 v~~~~nv~eddl~d 240 (376)
T 4a9a_A 227 IAFRCDATVDDLID 240 (376)
T ss_dssp EEECSCCCHHHHHH
T ss_pred eeecccCCHHHHHH
Confidence 32233444555443
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.56 E-value=1.2e-15 Score=130.71 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc--cc------cCC---C-----CCcceeeEEEEEEECCeEEEEEEEecCChhhhcc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE--FC------LES---K-----STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA 76 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~--~~------~~~---~-----~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 76 (217)
-||+|+|+.++|||||..+|+... .. ... + ...+.+.......+....+.++|+|||||..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 479999999999999999986321 10 000 0 0011222222223333445688999999999999
Q ss_pred chhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 77 ITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
.....++-+|++|+|+|+...-..+....|. ..... ++|.++++||+|..
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~---~lp~i~~INKmDr~ 132 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM---GIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH---TCSCEECCEECCSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc---CCCeEEEEeccccc
Confidence 9999999999999999998765444433443 33333 78999999999974
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.56 E-value=9.9e-14 Score=120.29 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=81.4
Q ss_pred CCceeeEEEEEcCCCCCHHHHHhHHhcCc--------ccc----------CCCCCcceeeEEEEEEEC-----CeEEEEE
Q 042687 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNE--------FCL----------ESKSTIGVEFATRTLQVE-----GKTVKAQ 64 (217)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKstLi~~l~~~~--------~~~----------~~~~t~~~~~~~~~~~~~-----~~~~~~~ 64 (217)
+-+..-+|+|+|+.++|||||..+|+... ... +.....++.-....+... ...+.++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 44677799999999999999999986321 100 001111111122223222 1257889
Q ss_pred EEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q 042687 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN 130 (217)
Q Consensus 65 i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 130 (217)
++|||||..|.......++-+|++|+|+|+...-..+...-|.....+ ++|.++++||+|..
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence 999999999999999999999999999999876555554444443333 89999999999974
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.56 E-value=6.1e-16 Score=123.28 Aligned_cols=103 Identities=16% Similarity=0.071 Sum_probs=65.3
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCH--H
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAA--E 138 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~ 138 (217)
+.+.++||||...... .....+|++++|+|++..+.+..+... . .+.|.++|+||+|+........ .
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 4678999999654332 246899999999999765332211110 0 1467899999999865322111 1
Q ss_pred HHHHHHHHc-------CCeEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 139 DAQILAEKE-------GLSFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 139 ~~~~~~~~~-------~~~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
+........ ..+++++||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222222221 357899999999999999999998764
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.53 E-value=6.8e-14 Score=107.34 Aligned_cols=113 Identities=14% Similarity=-0.066 Sum_probs=67.2
Q ss_pred EEEEEEecCChhhhccchh------hhhcCCcEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCeEEEEEeCCCCcccc
Q 042687 61 VKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDITKRQTFDNVTRWLR-ELRDHADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~p~ivv~nK~Dl~~~~ 133 (217)
+.+.+|||||......... ..+.. +++|+++|+........+..... ........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4678999999765433211 23456 88888988754322222211111 1111111268999999999986533
Q ss_pred ccCH--H---HHH----H-----------------HHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 134 AVAA--E---DAQ----I-----------------LAEKEG--LSFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 134 ~~~~--~---~~~----~-----------------~~~~~~--~~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
.... + +.. . ++..++ ++++++||+++.|+++++++|.+.+.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 2100 0 000 1 123333 48999999999999999999987663
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.52 E-value=4.5e-14 Score=121.76 Aligned_cols=158 Identities=14% Similarity=0.121 Sum_probs=95.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCC-CCcce-----------------------------------------
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESK-STIGV----------------------------------------- 47 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~-~t~~~----------------------------------------- 47 (217)
-..++|+|+|.+++|||||+|+|++..+.+... .++..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 355799999999999999999999977632221 11000
Q ss_pred ---------eeEEEEEEECCeEEEEEEEecCChhh-------------hccchhhhh-cCCcEEEEEEeCCChhhHHHHH
Q 042687 48 ---------EFATRTLQVEGKTVKAQIWDTAGQER-------------YRAITSAYY-RGAVGALLVYDITKRQTFDNVT 104 (217)
Q Consensus 48 ---------~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~ 104 (217)
+.....+...+. ..+.++||||... +..+...++ ..+|++++|+|+++........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 000111111111 1467999999422 233344444 5789999999998643323322
Q ss_pred HHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHH-H-HHHcC-CeEEEecCCCCCCHHHHHHHHHH
Q 042687 105 RWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQI-L-AEKEG-LSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 105 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
.++..+. ..+.|+++|+||+|+............. . ....+ .+++.+||++|.|++++++.+.+
T Consensus 208 ~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 208 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 3333333 3479999999999997543332211110 0 00112 35778899999999998888775
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.51 E-value=5.9e-14 Score=109.96 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=80.5
Q ss_pred hhhhccchhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC-HHHHHHHHHHcC
Q 042687 71 QERYRAITSAYYRGAVGALLVYDITKRQ-TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA-AEDAQILAEKEG 148 (217)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 148 (217)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+... ++|+++|+||+|+.+...+. .++...+....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~---~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF---KVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC---CCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5677788888999999999999999986 888888998876653 89999999999997643222 344556667778
Q ss_pred CeEEEecCCCCCCHHHHHHHHHH
Q 042687 149 LSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 149 ~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
++++++||++|.|+++++..+..
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHhhccC
Confidence 99999999999999999988753
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.45 E-value=2e-13 Score=108.49 Aligned_cols=103 Identities=14% Similarity=0.034 Sum_probs=62.3
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHH
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDA 140 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (217)
+.+.++||+|..... ......+|.+++++|+...+..+.+...+ . +.+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHHH
Confidence 467799999964221 23457899999999986543222111111 1 234577779999743222111122
Q ss_pred HHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHH
Q 042687 141 QILAEK----------EGLSFLETSALEALNVEKAFQTILLDIY 174 (217)
Q Consensus 141 ~~~~~~----------~~~~~~~vSa~~~~gv~~~~~~l~~~~~ 174 (217)
..+... +..+++.+||+++.|++++++.|.+.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 223221 1457899999999999999999988654
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=1.8e-11 Score=98.67 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=61.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCcc-ccCCCCCcceeeEEEEEEECCe---------------EEEEEEEecCChhh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGK---------------TVKAQIWDTAGQER 73 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~ 73 (217)
....+|+|+|++|||||||+|+|.+... .....++.+.+.....+.+.+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457999999999999999999999766 3444444444444555555541 13578999999432
Q ss_pred -------hccchhhhhcCCcEEEEEEeCCC
Q 042687 74 -------YRAITSAYYRGAVGALLVYDITK 96 (217)
Q Consensus 74 -------~~~~~~~~~~~~d~ii~v~d~~~ 96 (217)
+...+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23345566789999999999863
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.38 E-value=3.4e-13 Score=98.36 Aligned_cols=103 Identities=8% Similarity=-0.041 Sum_probs=68.2
Q ss_pred CChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHH---HHHHHhhc-CCCCeEEEEEeCC-CCccccccCHHHHHHH
Q 042687 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRW---LRELRDHA-DSNIVIMMAGNKS-DLNHLRAVAAEDAQIL 143 (217)
Q Consensus 69 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~---~~~i~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~ 143 (217)
+|++.++..|+.|+.++|++|||+|.+|.+.++.-.++ ...+.+.. ..++|++|++||. |++. ..+..++.+.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~ 187 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHE 187 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHH
Confidence 37889999999999999999999999987544322222 22222222 2589999999995 6643 3444444332
Q ss_pred HH----HcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 144 AE----KEGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 144 ~~----~~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
.. ...+.+..|||.+|+|+.+.++||.+.+
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 21 2346799999999999999999998765
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.36 E-value=9.2e-13 Score=105.98 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=52.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCe---------------EEEEEEEecCChhhhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK---------------TVKAQIWDTAGQERYR 75 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~ 75 (217)
..++|+|+|.+|||||||+|+|.+..+.....++.+.+.....+.+.+. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4589999999999999999999988764444444444444444444432 2358899999976543
Q ss_pred c-------chhhhhcCCcEEEEEEeCCCh
Q 042687 76 A-------ITSAYYRGAVGALLVYDITKR 97 (217)
Q Consensus 76 ~-------~~~~~~~~~d~ii~v~d~~~~ 97 (217)
. .+..+++.+|++++|+|+++.
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC---
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 3 456778999999999999753
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=94.50 Aligned_cols=104 Identities=7% Similarity=-0.039 Sum_probs=73.2
Q ss_pred cCChhhhccchhhhhcCCcEEEEEEeCCChhhHH---HHHHHHHHHHhhc-CCCCeEEEEEeC-CCCccccccCHHHHHH
Q 042687 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFD---NVTRWLRELRDHA-DSNIVIMMAGNK-SDLNHLRAVAAEDAQI 142 (217)
Q Consensus 68 ~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~ 142 (217)
.+|++..+..|+.|+.++|++|||+|.+|++.++ ++.++...+.+.. ..++|++|++|| .|++. .....++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 3567889999999999999999999999986543 2222223332322 248999999996 57754 334444433
Q ss_pred HHH----HcCCeEEEecCCCCCCHHHHHHHHHHHH
Q 042687 143 LAE----KEGLSFLETSALEALNVEKAFQTILLDI 173 (217)
Q Consensus 143 ~~~----~~~~~~~~vSa~~~~gv~~~~~~l~~~~ 173 (217)
... ...+.+..|||.+|+|+.+.++||.+.+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 221 2346799999999999999999999876
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.05 E-value=6.6e-10 Score=89.21 Aligned_cols=96 Identities=20% Similarity=0.260 Sum_probs=72.6
Q ss_pred ChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHH----HHHH
Q 042687 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQ----ILAE 145 (217)
Q Consensus 70 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~ 145 (217)
..+.|...+..+.+.+|++++|+|++++. ..|...+.+... +.|+++|+||+|+.... ...++.. .++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45788889999999999999999999854 345555555444 78999999999996532 2233333 3356
Q ss_pred HcCC---eEEEecCCCCCCHHHHHHHHHHH
Q 042687 146 KEGL---SFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 146 ~~~~---~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
..++ +++.+||++|.|++++++.|.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999998653
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.04 E-value=3.8e-11 Score=96.48 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC------ccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhc-------cchh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN------EFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR-------AITS 79 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~ 79 (217)
.+|+++|.+|+|||||+|+|.+. .......+. ++.....+.++.. +.++||||..... ....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG--TTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT--SSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC--eEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999875 221222222 2233334444432 5799999943111 1111
Q ss_pred hhh---cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEecC
Q 042687 80 AYY---RGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETSA 156 (217)
Q Consensus 80 ~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vSa 156 (217)
..+ ...+.++++++....-.+..+. .+......+.|+++++||.|....... ....+.+.+..+..+.+.++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 122 6789999999874321111111 012222347899999999998664433 23344556667766666655
Q ss_pred CCCCC
Q 042687 157 LEALN 161 (217)
Q Consensus 157 ~~~~g 161 (217)
.+..+
T Consensus 313 ~~~~~ 317 (369)
T 3ec1_A 313 RYAAE 317 (369)
T ss_dssp GGTTT
T ss_pred hhhhh
Confidence 54333
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=1.6e-09 Score=87.93 Aligned_cols=60 Identities=27% Similarity=0.483 Sum_probs=34.9
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCC--CcceeeEEEEEEE--CCeEEEEEEEecCCh
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKS--TIGVEFATRTLQV--EGKTVKAQIWDTAGQ 71 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~--~~~~~~~~i~D~~G~ 71 (217)
.++++|+|++|+|||||++.|.+..+...... ..+.......+.. .+....++++|++|.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 36799999999999999999998754321111 1111121222222 222346889999884
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.96 E-value=4.2e-11 Score=96.21 Aligned_cols=135 Identities=10% Similarity=0.132 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCcccc-----CCCCCcceeeEEEEEEECCeEEEEEEEecCChhhhcc----ch----h
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCL-----ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA----IT----S 79 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~----~ 79 (217)
.+|+++|.+|+|||||+|+|.+..... ......+++.....+.++.. +.++||||...... +. .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999998753111 11112222333333444432 67999999432111 11 1
Q ss_pred hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHHcCCeEEEec
Q 042687 80 AY--YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEKEGLSFLETS 155 (217)
Q Consensus 80 ~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~vS 155 (217)
.+ ....+.++++++......+..+. .+......+.|+++++||.|....... ....+.+.+..+..+.+.+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 11 25678888888874221111110 111222347899999999998764432 2334455566665555444
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.95 E-value=6.5e-10 Score=92.31 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=83.1
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHh------cCccc---cCC-CCCc-----------ceeeEEEEEE-------------E
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFT------RNEFC---LES-KSTI-----------GVEFATRTLQ-------------V 56 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~------~~~~~---~~~-~~t~-----------~~~~~~~~~~-------------~ 56 (217)
....|+|+|.+||||||++++|. +.... .+. .+.. +..+...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997 33221 100 0000 0111110000 0
Q ss_pred CCeEEEEEEEecCChhhhc-cch---hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCC
Q 042687 57 EGKTVKAQIWDTAGQERYR-AIT---SAY--YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVI-MMAGNKSDL 129 (217)
Q Consensus 57 ~~~~~~~~i~D~~G~~~~~-~~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl 129 (217)
....+.+.|+||||..... ..+ ... +..+|.+++|+|+....... .....+.. .+|+ ++|+||.|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence 0022467799999964221 111 111 23789999999997653311 11222322 2564 789999997
Q ss_pred ccccccCHHHHHHHHHHcCCeE------------------EEecCCCCCC-HHHHHHHHHHH
Q 042687 130 NHLRAVAAEDAQILAEKEGLSF------------------LETSALEALN-VEKAFQTILLD 172 (217)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~------------------~~vSa~~~~g-v~~~~~~l~~~ 172 (217)
.... . .+.......++|+ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~--g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKG--G--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCC--T--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccch--H--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 6321 1 1222333445543 3368888988 88888888654
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.90 E-value=3.1e-09 Score=81.75 Aligned_cols=137 Identities=20% Similarity=0.241 Sum_probs=71.0
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCC-------CCcceeeEEEEEEEC--CeEEEEEEEecCChhhhc-------
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESK-------STIGVEFATRTLQVE--GKTVKAQIWDTAGQERYR------- 75 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~-------~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~------- 75 (217)
.++++|+|+.|+|||||++.|.+...+.... ...........+... +....++++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4799999999999999999998754322110 000000111111111 222367899999832100
Q ss_pred cc-------hh--------------hhhcCCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccc
Q 042687 76 AI-------TS--------------AYYRGAVGALLVYDIT-KRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLR 133 (217)
Q Consensus 76 ~~-------~~--------------~~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 133 (217)
.+ .. ..+..+++.++++|.. .+-.... ...+..+. . .+++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~-~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---K-VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---T-TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---h-cCcEEEEEeccccCCHH
Confidence 00 00 0123468888999864 2222122 22333333 2 38999999999976533
Q ss_pred ccC--HHHHHHHHHHcCCeEEE
Q 042687 134 AVA--AEDAQILAEKEGLSFLE 153 (217)
Q Consensus 134 ~~~--~~~~~~~~~~~~~~~~~ 153 (217)
+.. ...+.......++.+|+
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 221 12334445566777664
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.89 E-value=2.8e-09 Score=85.66 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=70.4
Q ss_pred ChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHH----HHH
Q 042687 70 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQI----LAE 145 (217)
Q Consensus 70 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~ 145 (217)
.++.|......++..++++++|+|++++.+ .|...+..... +.|+++|+||+|+.... ...+.... ++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467888989888899999999999999763 23333333333 78999999999996532 22333333 355
Q ss_pred HcCC---eEEEecCCCCCCHHHHHHHHHHH
Q 042687 146 KEGL---SFLETSALEALNVEKAFQTILLD 172 (217)
Q Consensus 146 ~~~~---~~~~vSa~~~~gv~~~~~~l~~~ 172 (217)
..++ +++.+||++|.|++++++.+.+.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 5666 78999999999999999988653
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.85 E-value=5.2e-08 Score=79.06 Aligned_cols=156 Identities=12% Similarity=0.191 Sum_probs=83.1
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCc-cee--eEEEEEEECCeEEEEEEEecCChhhhccchhhh-----hc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI-GVE--FATRTLQVEGKTVKAQIWDTAGQERYRAITSAY-----YR 83 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~-~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~ 83 (217)
...|+|+|++|||||||+|.+.+.........+. +.+ .....+... ..-.+.++|++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3589999999999999999999854322211111 100 001111111 11146799999853211111111 33
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc-------cccccCHHH----HHHHH----HHcC
Q 042687 84 GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLN-------HLRAVAAED----AQILA----EKEG 148 (217)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~----~~~~~----~~~~ 148 (217)
..+..++ ++....+. .. ..+...+... +.|+++|.||.|+. .-......+ +..+. ...+
T Consensus 148 ~~~~~~~-lS~G~~~k-qr-v~la~aL~~~---~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK-ND-IDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCCH-HH-HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCccH-HH-HHHHHHHHhc---CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555 77652111 11 1222223332 78999999999962 111112222 33332 1222
Q ss_pred ---CeEEEecC--CCCCCHHHHHHHHHHHHH
Q 042687 149 ---LSFLETSA--LEALNVEKAFQTILLDIY 174 (217)
Q Consensus 149 ---~~~~~vSa--~~~~gv~~~~~~l~~~~~ 174 (217)
..++.+|+ .++.|++++.+.+.+.+-
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 36788999 566679999999887653
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.84 E-value=8.5e-09 Score=79.78 Aligned_cols=102 Identities=13% Similarity=0.020 Sum_probs=70.7
Q ss_pred EEecCChh-hhccchhhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHH
Q 042687 65 IWDTAGQE-RYRAITSAYYRGAVGALLVYDITKRQTFD--NVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQ 141 (217)
Q Consensus 65 i~D~~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 141 (217)
|-..|||. .........+..+|+++.|+|+.++.+.. .+..|+ .++|.++|+||+|+.+... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 44578875 44555667789999999999999887654 333332 2799999999999976221 12233
Q ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Q 042687 142 ILAEKEGLSFLETSALEALNVEKAFQTILLDIYHI 176 (217)
Q Consensus 142 ~~~~~~~~~~~~vSa~~~~gv~~~~~~l~~~~~~~ 176 (217)
.+....+++++.+||.++.|++++++.+.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 44445578999999999999999999888766543
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.52 E-value=8e-08 Score=74.31 Aligned_cols=57 Identities=21% Similarity=0.416 Sum_probs=35.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCCh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~ 71 (217)
..++|+++|.+|||||||+|+|.+........ ..+++.....+..+. .+.++||||.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEEeCC---CEEEEECcCc
Confidence 45899999999999999999999876432221 112222222233333 4679999995
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.49 E-value=4.1e-08 Score=75.11 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 72 (217)
++|+++|.+|+|||||+|+|.+...... .++.+.+.....+..+. .+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCcc
Confidence 6999999999999999999998765322 22222222222223332 46799999964
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.48 E-value=4.8e-07 Score=73.82 Aligned_cols=86 Identities=17% Similarity=0.049 Sum_probs=51.2
Q ss_pred EEEEEEecCChhhhccc----hh--hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 61 VKAQIWDTAGQERYRAI----TS--AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
+.+.|+||+|....... .. .....+|.+++|+|+....... .....+... -.+..||+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh---CCCeEEEEECCCCcc---
Confidence 45779999994321110 11 1234678999999987643322 222334333 234678999999754
Q ss_pred cCHHHHHHHHHHcCCeEEEecC
Q 042687 135 VAAEDAQILAEKEGLSFLETSA 156 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~vSa 156 (217)
....+..+....++|+..++.
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC
T ss_pred -cccHHHHHHHHHCCCEEEEEc
Confidence 122344555677889888875
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.42 E-value=1e-07 Score=74.32 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=60.8
Q ss_pred ccchhhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcccccc--CHHHHHHHHHHcCCeE
Q 042687 75 RAITSAYYRGAVGALLVYDITKRQT-FDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--AAEDAQILAEKEGLSF 151 (217)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 151 (217)
..+.+..+.++|.+++|+|+.+|.. ...+.+++..... .++|.+||+||+|+.+.... ...+...+....|.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3444557899999999999987653 3344444433322 38899999999999764320 1223444445568899
Q ss_pred EEecCCCCCCHHHHHH
Q 042687 152 LETSALEALNVEKAFQ 167 (217)
Q Consensus 152 ~~vSa~~~~gv~~~~~ 167 (217)
+.+||.++.|+++++.
T Consensus 154 ~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIP 169 (307)
T ss_dssp EECCHHHHTTCTTTGG
T ss_pred EEEecCCCCCHHHHHh
Confidence 9999998888765544
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.40 E-value=1.6e-07 Score=71.83 Aligned_cols=93 Identities=11% Similarity=-0.021 Sum_probs=62.0
Q ss_pred cCChhh-hccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHHHHHHHH
Q 042687 68 TAGQER-YRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDAQILAEK 146 (217)
Q Consensus 68 ~~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (217)
.|||.. ........+.++|++|.|+|+.++.+..... +. .. ++|.++|+||+|+.+... .+....+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~----ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD----FS--RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC----CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH----hc--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 366642 2334566789999999999999876543210 11 11 789999999999976321 1233344455
Q ss_pred cCCeEEEecCCCCCCHHHHHHHHHH
Q 042687 147 EGLSFLETSALEALNVEKAFQTILL 171 (217)
Q Consensus 147 ~~~~~~~vSa~~~~gv~~~~~~l~~ 171 (217)
.++++ .+||.++.|++++++.+.+
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999999887754
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.31 E-value=2.5e-06 Score=69.71 Aligned_cols=83 Identities=16% Similarity=0.035 Sum_probs=46.8
Q ss_pred EEEEEEecCChhhhc----cchhh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-e-EEEEEeCCCCccc
Q 042687 61 VKAQIWDTAGQERYR----AITSA--YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNI-V-IMMAGNKSDLNHL 132 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~----~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~ivv~nK~Dl~~~ 132 (217)
+.+.|+||||..... ..... .+..+|.+++|+|+..... .......+.. .. | ..+|+||.|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE----AVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT----TSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh----cccCCeEEEEeCCCCccc
Confidence 456799999954211 11111 1236899999999865432 1122222222 34 5 7899999997531
Q ss_pred cccCHHHHHHHHHHcCCeEEEe
Q 042687 133 RAVAAEDAQILAEKEGLSFLET 154 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v 154 (217)
...+..+....+.|+..+
T Consensus 254 ----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEe
Confidence 112334566667766554
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.31 E-value=8.2e-07 Score=75.07 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=38.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCC-CcceeeEEEEE--EE-CCeEEEEEEEecCChh
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKS-TIGVEFATRTL--QV-EGKTVKAQIWDTAGQE 72 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~-t~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~ 72 (217)
.+.++|+|+|.+|||||||+|+|.+......... +.+.+...... .. ......+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 4568999999999999999999998764322111 11111112111 11 1122357799999953
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.24 E-value=1.8e-06 Score=70.34 Aligned_cols=90 Identities=14% Similarity=0.027 Sum_probs=53.0
Q ss_pred EEEEEEecCChhh--hcc----chhh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccc
Q 042687 61 VKAQIWDTAGQER--YRA----ITSA--YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (217)
Q Consensus 61 ~~~~i~D~~G~~~--~~~----~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 132 (217)
+.+.++||||... ... .... .....|.+++|+|+...+... .....+.+. -.+..||+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc---cCCcEEEEecccccc-
Confidence 4567999999532 111 1111 122568999999997643322 223344433 245778999999653
Q ss_pred cccCHHHHHHHHHHcCCeEEEecCCCCCCH
Q 042687 133 RAVAAEDAQILAEKEGLSFLETSALEALNV 162 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 162 (217)
....+..+....+.|+..++. |.++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 223455556667899888875 4443
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.19 E-value=3.8e-06 Score=71.70 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCcc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
..|+|+|+.|||||||++.+.+-..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-
T ss_pred CeEEEECCCCChHHHHHHHHhCCCC
Confidence 3599999999999999999988643
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.15 E-value=9.3e-06 Score=64.59 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=56.4
Q ss_pred hhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC-HHHHHHHHHHcCCeEEEecCCC
Q 042687 81 YYRGAVGALLVYDITKRQ-TFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA-AEDAQILAEKEGLSFLETSALE 158 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~vSa~~ 158 (217)
...++|.+++|... +|. +...+.+++...... ++|.+||+||+|+.+..... ..+........|++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46899999988665 454 334445554433333 78889999999997633210 1122233345688999999999
Q ss_pred CCCHHHHHHHH
Q 042687 159 ALNVEKAFQTI 169 (217)
Q Consensus 159 ~~gv~~~~~~l 169 (217)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999877643
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.13 E-value=4.5e-06 Score=64.95 Aligned_cols=91 Identities=15% Similarity=0.048 Sum_probs=54.4
Q ss_pred EEEEEEecCChhh--hc-cchh-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCcc
Q 042687 61 VKAQIWDTAGQER--YR-AITS-----AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNH 131 (217)
Q Consensus 61 ~~~~i~D~~G~~~--~~-~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~ 131 (217)
+.+.++||||... .. .+.. .....+|.+++|+|+.... ........+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 4577999999654 21 1111 1245789999999986432 22222223332 244 678899999643
Q ss_pred ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 042687 132 LRAVAAEDAQILAEKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 164 (217)
....+..+....++|+..++ .|.++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 12345567777888988876 4555543
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.05 E-value=3e-07 Score=76.20 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=64.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEEecCChh--hhccch--------hh
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE--RYRAIT--------SA 80 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~~--------~~ 80 (217)
..+.|+++|.+||||||+.++|....... ...+.............+......+||..|.+ ..+..+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999987543211 11111100000000001111233578988873 223333 45
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q 042687 81 YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSD 128 (217)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 128 (217)
++...++.++|+|.++. ..+....|+..+... +.+++.+-..++
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~~~ 160 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESICV 160 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEECCC
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEECC
Confidence 56667888999999987 455666777666654 445555543333
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.91 E-value=1.4e-05 Score=62.96 Aligned_cols=90 Identities=13% Similarity=0.057 Sum_probs=50.4
Q ss_pred EEEEecCChhhhccch----hh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccC
Q 042687 63 AQIWDTAGQERYRAIT----SA--YYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVA 136 (217)
Q Consensus 63 ~~i~D~~G~~~~~~~~----~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~ 136 (217)
+.++|++|........ .. ..-..|-.+++.|+.... .+......+.... -..++++||.|... +
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a-~--- 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA-R--- 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS-C---
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc-c---
Confidence 4579999953221111 11 112468889999976543 3333334444332 22467789999532 1
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCHHH
Q 042687 137 AEDAQILAEKEGLSFLETSALEALNVEK 164 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 164 (217)
.-.+..+....+.|+..++ +|.++++
T Consensus 284 ~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 2235566777889988886 5555543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.65 E-value=5.9e-05 Score=61.73 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.+..-|.|+|++++|||||+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3567899999999999999999986
No 236
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.49 E-value=0.0013 Score=48.14 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=55.5
Q ss_pred EEEEEEecCCh-hhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHH
Q 042687 61 VKAQIWDTAGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAED 139 (217)
Q Consensus 61 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 139 (217)
+.+.++|+|+. .. ......+..+|.+|++...+ ..++..+..++..+.... +.++.+|+|+.|..... ...+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~--~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK--DGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC--HHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch--HHHH
Confidence 45779999886 32 23445677899999998875 556677777777766633 45688999999864301 1234
Q ss_pred HHHHHHHcCCeEE
Q 042687 140 AQILAEKEGLSFL 152 (217)
Q Consensus 140 ~~~~~~~~~~~~~ 152 (217)
..+.....+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4555555666554
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.48 E-value=0.00058 Score=55.82 Aligned_cols=83 Identities=18% Similarity=0.109 Sum_probs=45.0
Q ss_pred EEEEEEecCChhhhc-cchh-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCcccc
Q 042687 61 VKAQIWDTAGQERYR-AITS-----AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIV-IMMAGNKSDLNHLR 133 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~-~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~ 133 (217)
+.+.|+||||..... .... .....++.+++|+|+...... ......+.. ..+ ..+|+||.|... +
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~-~ 255 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDA-R 255 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSS-C
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCc-c
Confidence 457799999954321 1111 124478899999998754322 122223332 233 347889999743 1
Q ss_pred ccCHHHHHHHHHHcCCeEEEe
Q 042687 134 AVAAEDAQILAEKEGLSFLET 154 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~v 154 (217)
.. .+..+....+.|+..+
T Consensus 256 -~g--~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 -GG--AALSIRHITGKPIKFL 273 (433)
T ss_dssp -CT--HHHHHHHHHCCCEEEE
T ss_pred -HH--HHHHHHHHHCCCeEEE
Confidence 11 3334555566664443
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.48 E-value=6.2e-05 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.793 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.+++|+|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988764
No 239
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.43 E-value=0.00026 Score=55.08 Aligned_cols=22 Identities=64% Similarity=0.871 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++++|++|||||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57999999999999999998 43
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.39 E-value=8.5e-05 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999763
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.37 E-value=4e-05 Score=59.72 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-.++|+|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998754
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.34 E-value=0.00011 Score=53.64 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.++|+|++|||||||++.|.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998763
No 243
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.32 E-value=0.00013 Score=57.93 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
.++|+|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999987654
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.29 E-value=0.00019 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999775
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.24 E-value=0.00015 Score=52.16 Aligned_cols=21 Identities=43% Similarity=0.719 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999864
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.23 E-value=0.00017 Score=52.53 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
--|+|+|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999764
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.21 E-value=0.00018 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.--++|+|++|||||||++.|.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3468999999999999999998743
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.20 E-value=0.00019 Score=52.26 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
--|+|+|++|||||||+++|.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999864
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.18 E-value=0.00019 Score=52.55 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
=-++|+|++|||||||++.+.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999987643
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.18 E-value=0.00018 Score=51.04 Aligned_cols=20 Identities=45% Similarity=0.669 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHhHHh
Q 042687 14 KIVLIGDSGVGKSNILSRFT 33 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~ 33 (217)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999754
No 251
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.17 E-value=0.00024 Score=55.32 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
.++++|++|||||||+|.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987543
No 252
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.17 E-value=0.00021 Score=50.79 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.17 E-value=0.00022 Score=51.47 Aligned_cols=21 Identities=43% Similarity=0.719 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999754
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.16 E-value=0.0002 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.661 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-.++|+|++|||||||++.|.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999988743
No 255
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.16 E-value=0.0017 Score=52.82 Aligned_cols=85 Identities=20% Similarity=0.128 Sum_probs=46.9
Q ss_pred EEEEEEecCChhhhcc-chh-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 61 VKAQIWDTAGQERYRA-ITS-----AYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
+.+.|+||||...... ... ...-.+|.+++|+|+.... ........+.... ....+|+||.|... +
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~l---~i~GVIlTKlD~~~-~- 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKV---GVTGLVLTKLDGDA-R- 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHT---CCCEEEEESGGGCS-S-
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhcC---CceEEEEeCcCCcc-c-
Confidence 3577999999532211 111 1123678899999986432 2222223333321 12467889998642 1
Q ss_pred cCHHHHHHHHHHcCCeEEEec
Q 042687 135 VAAEDAQILAEKEGLSFLETS 155 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~vS 155 (217)
...+..+....+.|+..+.
T Consensus 253 --~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 253 --GGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp --CHHHHHHHHHHCCCEEEEE
T ss_pred --HHHHHHHHHHHCCCEEEEe
Confidence 1234455667788877665
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.15 E-value=0.00024 Score=52.08 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.....|+|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999988764
No 257
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.13 E-value=0.00025 Score=52.05 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
--|+|+|++|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999998653
No 258
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.09 E-value=0.00036 Score=49.47 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|+|++|||||||.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.05 E-value=0.00033 Score=49.13 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
=-++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998754
No 260
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.04 E-value=0.00031 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999887643
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.01 E-value=0.00039 Score=49.14 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|+|++|||||||.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.01 E-value=0.00041 Score=48.87 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHhHH
Q 042687 13 FKIVLIGDSGVGKSNILSRF 32 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l 32 (217)
..|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.01 E-value=0.00037 Score=50.72 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
..|+|+|++|||||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999997754
No 264
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.99 E-value=0.00044 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
....-|+|.|+.|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45578999999999999999998764
No 265
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.98 E-value=0.00036 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987643
No 266
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.98 E-value=0.00038 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
...-|+|+|++|||||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999998753
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.98 E-value=0.00041 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
....|+|+|+.|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988763
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.97 E-value=0.00041 Score=49.88 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-++|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 269
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.96 E-value=0.0019 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988753
No 270
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.96 E-value=0.00044 Score=51.95 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988753
No 271
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.95 E-value=0.00042 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998764
No 272
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.95 E-value=0.0018 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
..|+|.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999988653
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.95 E-value=0.00053 Score=48.66 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.94 E-value=0.00049 Score=48.43 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.93 E-value=0.00047 Score=50.89 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987753
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.93 E-value=0.00048 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.-.|+|+|++|||||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 277
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.92 E-value=0.00054 Score=51.52 Aligned_cols=21 Identities=29% Similarity=0.692 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHh
Q 042687 13 FKIVLIGDSGVGKSNILSRFT 33 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~ 33 (217)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 278
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.92 E-value=0.00051 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998863
No 279
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.91 E-value=0.00047 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999987744
No 280
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.91 E-value=0.00047 Score=52.49 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987753
No 281
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.91 E-value=0.00068 Score=49.11 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
...|+|.|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 368999999999999999998764
No 282
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.91 E-value=0.00048 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987753
No 283
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.90 E-value=0.00055 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-++|+|++|||||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 284
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.90 E-value=0.00053 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 285
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.89 E-value=0.00052 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999988754
No 286
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.88 E-value=0.00057 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 287
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.88 E-value=0.00051 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999987754
No 288
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.87 E-value=0.0006 Score=51.32 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987753
No 289
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.87 E-value=0.00054 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
=.++|+|+.|||||||++.+.+-
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999998763
No 290
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.87 E-value=0.00055 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987753
No 291
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.86 E-value=0.00076 Score=48.85 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=23.1
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 1 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
|++.+-+..-.-+.|+|.|..||||||+.+.|...
T Consensus 1 ~~~~~~~~~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 1 MGSDKIHHHHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp ---------CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcccccccccceEEEEECCCCCCHHHHHHHHHHh
Confidence 55555555667789999999999999999988653
No 292
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.86 E-value=0.00061 Score=48.53 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
...|+|.|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 293
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.86 E-value=0.00057 Score=52.09 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999987653
No 294
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.85 E-value=0.00062 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999987753
No 295
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.85 E-value=0.00058 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988753
No 296
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.84 E-value=0.00055 Score=48.81 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.-.++|+|++|+|||||++.+.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999987643
No 297
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.84 E-value=0.0006 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988753
No 298
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.83 E-value=0.00071 Score=49.11 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
-.|+|+|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 299
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.83 E-value=0.00068 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
++|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 300
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.83 E-value=0.00062 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999987753
No 301
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.83 E-value=0.0007 Score=49.05 Aligned_cols=21 Identities=38% Similarity=0.707 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998865
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.83 E-value=0.00064 Score=49.41 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|+|.+|||||||.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 303
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.82 E-value=0.00064 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 304
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.82 E-value=0.00064 Score=49.44 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 305
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.81 E-value=0.00067 Score=52.75 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
=.++|+|++|+|||||++.|.+-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 36899999999999999998763
No 306
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.0039 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|.|++|+|||||++.+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988763
No 307
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.80 E-value=0.00048 Score=50.60 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999876
No 308
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.80 E-value=0.00069 Score=51.73 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.80 E-value=0.00087 Score=52.36 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=23.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.....-|+|+|++|||||||++.|.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 345678999999999999999988764
No 310
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.80 E-value=0.00072 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999998874
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.79 E-value=0.00095 Score=48.68 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
....|+|+|++|||||||.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998764
No 312
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.79 E-value=0.00067 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999987753
No 313
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.79 E-value=0.00073 Score=47.91 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 314
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.79 E-value=0.0009 Score=48.73 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 315
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.78 E-value=0.00082 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 316
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.78 E-value=0.00076 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999987754
No 317
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.78 E-value=0.001 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
...|+|.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999864
No 318
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.76 E-value=0.0008 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 319
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.76 E-value=0.00073 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988754
No 320
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.76 E-value=0.00046 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=15.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHh-cC
Q 042687 13 FKIVLIGDSGVGKSNILSRFT-RN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~-~~ 35 (217)
--|+|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999998 54
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.75 E-value=0.00075 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999987653
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.73 E-value=0.00092 Score=47.85 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 323
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.73 E-value=0.00097 Score=48.73 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 324
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.73 E-value=0.001 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..+.|+|.|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998864
No 325
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.73 E-value=0.0011 Score=49.87 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..++|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999864
No 326
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.72 E-value=0.00088 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998854
No 327
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.70 E-value=0.0013 Score=47.71 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
....|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998864
No 328
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.70 E-value=0.00098 Score=47.83 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 329
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.69 E-value=0.00092 Score=50.04 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-++|+|++|||||||++.+..
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999998873
No 330
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.69 E-value=0.001 Score=47.61 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
..+|+|+|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998654
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.69 E-value=0.00099 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988754
No 332
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.69 E-value=0.00091 Score=49.10 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 333
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.68 E-value=0.0011 Score=49.92 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
....|+|+|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998876
No 334
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.68 E-value=0.00083 Score=49.62 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
=-++|+|++|+|||||++.+.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 335
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.68 E-value=0.0011 Score=48.05 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
...|+|+|++|||||||.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988653
No 336
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.67 E-value=0.001 Score=47.43 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 337
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.65 E-value=0.00043 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.|+|+|++|||||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 338
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.65 E-value=0.0012 Score=48.07 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999999865
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.64 E-value=0.0013 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 340
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.64 E-value=0.0012 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
...-|+|.|++|||||||.++|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999864
No 341
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.64 E-value=0.0014 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.....|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998754
No 342
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.63 E-value=0.0012 Score=46.76 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|+|++|||||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.60 E-value=0.0015 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 344
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.59 E-value=0.0015 Score=51.18 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.0
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
....+-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999998854
No 345
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.59 E-value=0.00078 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999987643
No 346
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.59 E-value=0.00093 Score=53.36 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998774
No 347
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.59 E-value=0.0014 Score=45.98 Aligned_cols=21 Identities=43% Similarity=0.488 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998865
No 348
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.58 E-value=0.0015 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.083 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999865
No 349
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.57 E-value=0.0011 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|+.|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988754
No 350
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.56 E-value=0.0012 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.|+|+|+.|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998763
No 351
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.56 E-value=0.0012 Score=50.51 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
|+++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998763
No 352
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.56 E-value=0.0014 Score=48.45 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 353
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.55 E-value=0.0012 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.-.|+|+|+.|||||||++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999999999864
No 354
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.55 E-value=0.00077 Score=52.48 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|+|+.|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999988764
No 355
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.55 E-value=0.002 Score=47.59 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-|+|+|+|||||+|...+|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366799999999999998864
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.55 E-value=0.0015 Score=47.45 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.....|+|+|++|||||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999998865
No 357
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.55 E-value=0.0012 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999987753
No 358
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.54 E-value=0.0013 Score=52.26 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|+.|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988754
No 359
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0014 Score=51.02 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..--++++|+.|||||||++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998865
No 360
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.51 E-value=0.0015 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998764
No 361
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.50 E-value=0.0014 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999988754
No 362
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.50 E-value=0.0014 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999988754
No 363
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.49 E-value=0.0015 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988754
No 364
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.49 E-value=0.0016 Score=50.71 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.....|+|+|+.|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999998876
No 365
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.49 E-value=0.0021 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
....|+|+|.+||||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 366
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.49 E-value=0.0015 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
++|+|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998763
No 367
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.49 E-value=0.0018 Score=46.27 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 368
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.49 E-value=0.0015 Score=52.39 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998754
No 369
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.48 E-value=0.0012 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 370
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.48 E-value=0.0017 Score=49.03 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.3
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
...+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 371
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.48 E-value=0.0018 Score=46.01 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988664
No 372
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.45 E-value=0.0014 Score=51.57 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988743
No 373
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.45 E-value=0.0016 Score=52.10 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|+.|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999988753
No 374
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.45 E-value=0.0016 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999988754
No 375
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.45 E-value=0.0014 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-.|+|+|+.|||||||++.+.+-.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 479999999999999999998743
No 376
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.44 E-value=0.0016 Score=49.19 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.44 E-value=0.0018 Score=46.37 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 378
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.44 E-value=0.0018 Score=46.57 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 379
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.43 E-value=0.0017 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.|+|+|++|||||||++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999998763
No 380
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.43 E-value=0.0019 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..+|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 381
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.40 E-value=0.002 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.-|+|+|++|||||||..+|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999998864
No 382
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.40 E-value=0.0014 Score=49.48 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 383
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.39 E-value=0.0019 Score=46.41 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 384
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.39 E-value=0.00061 Score=49.82 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.37 E-value=0.002 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
+.|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998854
No 386
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.36 E-value=0.0019 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 387
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.33 E-value=0.0019 Score=52.45 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.|+|+|+.|||||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
No 388
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.31 E-value=0.0034 Score=46.67 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
...-|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998753
No 389
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.31 E-value=0.0018 Score=46.19 Aligned_cols=22 Identities=45% Similarity=0.600 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998864
No 390
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.30 E-value=0.0021 Score=49.11 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
|+|+|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999998763
No 391
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.30 E-value=0.0025 Score=48.13 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHhHHh
Q 042687 13 FKIVLIGDSGVGKSNILSRFT 33 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~ 33 (217)
..|+|+|++|||||||++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 392
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.29 E-value=0.0022 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..--|+|+|+.|||||||++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345789999999999999998865
No 393
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.29 E-value=0.0013 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|+.|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999988754
No 394
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.29 E-value=0.0024 Score=44.94 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.29 E-value=0.0028 Score=46.52 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999865
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.29 E-value=0.0021 Score=50.60 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998764
No 397
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.28 E-value=0.002 Score=48.89 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.....|+|.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999988653
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.27 E-value=0.0023 Score=47.18 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-++|+|++|+|||||++.+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998754
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.25 E-value=0.003 Score=44.84 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
...|+|.|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 400
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.25 E-value=0.0022 Score=51.67 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|+|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999998764
No 401
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.23 E-value=0.0022 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-.|+|+|++|||||||++.+.+-.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999997643
No 402
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.22 E-value=0.0017 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=15.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 403
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.21 E-value=0.0021 Score=45.49 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.|+|.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988654
No 404
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.21 E-value=0.012 Score=48.13 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=20.9
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHh
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFT 33 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~ 33 (217)
..+..-|.|+|+.++|||+|+|.|.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3466788899999999999999554
No 405
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.21 E-value=0.0026 Score=45.23 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999854
No 406
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.19 E-value=0.0032 Score=44.17 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.-.|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 407
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.17 E-value=0.0026 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.778 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.--|+|+|+.|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 35789999999999999998865
No 408
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.16 E-value=0.0029 Score=47.69 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.|+|+|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999998753
No 409
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.15 E-value=0.004 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 410
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.013 Score=43.41 Aligned_cols=87 Identities=10% Similarity=0.034 Sum_probs=45.3
Q ss_pred CceeeEEEEEcCCCCCHHHHHhHHhcCccccCCCCCcceeeEEEEEEECCeEEEEEEE-ec-CChhhhccc-----hhhh
Q 042687 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW-DT-AGQERYRAI-----TSAY 81 (217)
Q Consensus 9 ~~~~~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~-D~-~G~~~~~~~-----~~~~ 81 (217)
+..++-|++.|+++.|||+|++++.+...... ................+-|| |. +....+... ....
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~~~~~------~i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EV 99 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCSSTGI------SIVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPL 99 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCCCCSS------CEEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHH
T ss_pred CCCceEEEecCcccccHHHHHHHHhccccccc------ccccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHH
Confidence 34445566669999999999999987632111 11122233334444444443 44 322211111 1112
Q ss_pred hcCCcEEEEEEeCCChhhHH
Q 042687 82 YRGAVGALLVYDITKRQTFD 101 (217)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~ 101 (217)
....+++|+|++...+...+
T Consensus 100 R~viggII~~f~~p~~~~~~ 119 (233)
T 3uc9_A 100 RNVMAGIILITDIRQTKPQE 119 (233)
T ss_dssp HHTEEEEEEEECHHHHCGGG
T ss_pred HHhcceEEEEEeCCCcchHH
Confidence 23458899999865444333
No 411
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.14 E-value=0.0033 Score=45.46 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
..|+|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 412
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.14 E-value=0.0036 Score=48.07 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..+.|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 413
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.14 E-value=0.0033 Score=46.52 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988653
No 414
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.13 E-value=0.0013 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988754
No 415
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0023 Score=52.67 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-.++|+|+.|||||||++.|.+-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 479999999999999999987743
No 416
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.12 E-value=0.11 Score=40.30 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHhHHhcC
Q 042687 15 IVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~ 35 (217)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999998653
No 417
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.10 E-value=0.0022 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
--++|+|+.|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 467899999999999999998653
No 418
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.10 E-value=0.0031 Score=50.01 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
=+++|+|+.|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998764
No 419
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.09 E-value=0.0036 Score=49.89 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHH
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRF 32 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l 32 (217)
...+||+|+|..|||||||++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 35689999999999999999876
No 420
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.08 E-value=0.0031 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.07 E-value=0.0036 Score=46.72 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.+.|+|.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998863
No 422
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.06 E-value=0.003 Score=48.76 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|++|+|||||+..+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 58899999999999999887643
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.04 E-value=0.0036 Score=45.79 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-++|+|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 424
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.03 E-value=0.0043 Score=45.37 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
...|+|+|.+||||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 425
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.03 E-value=0.0036 Score=46.49 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999874
No 426
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.01 E-value=0.025 Score=45.09 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHhHHh
Q 042687 15 IVLIGDSGVGKSNILSRFT 33 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~ 33 (217)
.+|+|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999986
No 427
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.95 E-value=0.0048 Score=42.65 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHhHHh
Q 042687 15 IVLIGDSGVGKSNILSRFT 33 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~ 33 (217)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999975
No 428
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.93 E-value=0.0059 Score=47.13 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
...-|++.|++|+|||+|.+.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3356788899999999999998753
No 429
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.92 E-value=0.0036 Score=45.69 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
.+++.|++|+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988865
No 430
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.92 E-value=0.0066 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.-|+|+|++|||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4588999999999999999864
No 431
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.89 E-value=0.0053 Score=47.38 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|.+||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 432
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.87 E-value=0.0044 Score=49.67 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
-.|+|+|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 433
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.86 E-value=0.0048 Score=45.42 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-++|.|++|+|||+|++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988653
No 434
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.85 E-value=0.005 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
=.++|+|+.|+|||||++.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 435
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.85 E-value=0.022 Score=41.09 Aligned_cols=85 Identities=11% Similarity=-0.042 Sum_probs=54.6
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEeCCCCccccccCHH
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHA--DSNIVIMMAGNKSDLNHLRAVAAE 138 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~ 138 (217)
+.+.++|+|+.. .......+..+|.+|++...+.. + ..+..++..+.... ..+.++.+|+|+.|.... . ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~-~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--M-LN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--E-EH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--H-HH
Confidence 456799999865 23345566779999999987643 3 56666666665543 235677999999995431 1 23
Q ss_pred HHHHHHHHcCCeEE
Q 042687 139 DAQILAEKEGLSFL 152 (217)
Q Consensus 139 ~~~~~~~~~~~~~~ 152 (217)
+..++...++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 44555555565544
No 436
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.85 E-value=0.0053 Score=42.07 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
..|+|.|++|+|||++.+.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998764
No 437
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.83 E-value=0.0046 Score=50.57 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
=+++|+|++|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999988754
No 438
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.82 E-value=0.0048 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.-.|+|.|++|+|||+|++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 439
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.82 E-value=0.0047 Score=51.05 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998865
No 440
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.78 E-value=0.0053 Score=46.17 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|++|+|||+|++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 441
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.78 E-value=0.0057 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.....|+|+|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 442
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.77 E-value=0.0056 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998653
No 443
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.77 E-value=0.015 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..|+|.|++|+|||+|++.+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4699999999999999999854
No 444
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.75 E-value=0.0062 Score=47.08 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=20.8
Q ss_pred ceeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 10 DYLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 10 ~~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.....|+|.|++|+|||+|++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999987654
No 445
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.74 E-value=0.0052 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
-++|+|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999998754
No 446
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.73 E-value=0.0052 Score=52.20 Aligned_cols=23 Identities=48% Similarity=0.612 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999987643
No 447
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.73 E-value=0.0068 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=20.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.-++++|+|++||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 457999999999999999998854
No 448
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.71 E-value=0.0056 Score=47.44 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.|+|.|++|+|||+|++.+.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999998763
No 449
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.70 E-value=0.0059 Score=51.82 Aligned_cols=23 Identities=48% Similarity=0.680 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987753
No 450
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.0058 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999998754
No 451
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.65 E-value=0.0059 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.++|.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998763
No 452
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.64 E-value=0.0058 Score=46.74 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 453
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.61 E-value=0.0094 Score=45.29 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
....++|.|++|+|||+|++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999998763
No 454
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.61 E-value=0.0074 Score=43.79 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999997653
No 455
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.60 E-value=0.0061 Score=47.19 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=47.4
Q ss_pred EEEEEEecCChhhhcc--c--hhhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccc
Q 042687 61 VKAQIWDTAGQERYRA--I--TSAYYR--GAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRA 134 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~--~--~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 134 (217)
..+.|+||+|...... + ....+. ..+.+++|+|.+.. ...+..+...+... + ..-+|+||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l---~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSSV---P-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSSS---C-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhcC---C-CCEEEEeCCCcccc--
Confidence 3577999999653221 1 112222 36778889987643 23444433333211 2 23466799996531
Q ss_pred cCHHHHHHHHHHcCCeEEEec
Q 042687 135 VAAEDAQILAEKEGLSFLETS 155 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~vS 155 (217)
...+.......++|+..++
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2255566777888876654
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.57 E-value=0.007 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..-|+|+|.+||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 457
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.57 E-value=0.0098 Score=45.95 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
+.-.++|+|++|+|||+|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHH
Confidence 3357999999999999999988764
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.56 E-value=0.0072 Score=51.53 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
=.++|+|+.|+|||||++.+.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 368999999999999999988754
No 459
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.54 E-value=0.0053 Score=52.09 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|+|+.|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999988764
No 460
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.51 E-value=0.0071 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
.++|+|+.|+|||||++.+.+...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987543
No 461
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.51 E-value=0.0077 Score=46.85 Aligned_cols=86 Identities=20% Similarity=0.149 Sum_probs=47.5
Q ss_pred EEEEEecCChhhhccc-------hhhh-----hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q 042687 62 KAQIWDTAGQERYRAI-------TSAY-----YRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDL 129 (217)
Q Consensus 62 ~~~i~D~~G~~~~~~~-------~~~~-----~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl 129 (217)
.+.++|+||....... .... ....+.+++|.|..... +.+.. ...+.+.. + ..-+|+||.|.
T Consensus 188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D~ 261 (306)
T 1vma_A 188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLDG 261 (306)
T ss_dssp SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGGG
T ss_pred CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCCC
Confidence 4679999995211110 0111 12478889999986332 22222 22233221 2 23567799995
Q ss_pred ccccccCHHHHHHHHHHcCCeEEEecCC
Q 042687 130 NHLRAVAAEDAQILAEKEGLSFLETSAL 157 (217)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 157 (217)
.. . .-.+..+....+.|+..+..-
T Consensus 262 ~~--~--gG~~l~~~~~~~~Pi~~i~~G 285 (306)
T 1vma_A 262 TA--K--GGITLAIARELGIPIKFIGVG 285 (306)
T ss_dssp CS--C--TTHHHHHHHHHCCCEEEEECS
T ss_pred cc--c--hHHHHHHHHHHCCCEEEEeCC
Confidence 32 1 224667778889998877543
No 462
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.50 E-value=0.0082 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
.++|+|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999987543
No 463
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.49 E-value=0.0054 Score=52.22 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999987743
No 464
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.48 E-value=0.007 Score=48.03 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.++|.|++|+|||||++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 465
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.47 E-value=0.0091 Score=43.18 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998855
No 466
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.44 E-value=0.0061 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999887643
No 467
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.43 E-value=0.0088 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
.++|+|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987543
No 468
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.42 E-value=0.0069 Score=45.00 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=17.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
...-|+|.|++||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 469
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.39 E-value=0.0088 Score=46.09 Aligned_cols=22 Identities=41% Similarity=0.792 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..+++.|++|+|||+|++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 470
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.38 E-value=0.0086 Score=44.51 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999887754
No 471
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.38 E-value=0.0087 Score=46.86 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-.|+|.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998763
No 472
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.0089 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
--|++.|+||+|||+|++++.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999876
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.36 E-value=0.0069 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|+|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988764
No 474
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.35 E-value=0.0098 Score=47.36 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 475
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.34 E-value=0.0083 Score=47.58 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
--+.|+|++|+|||||+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999998864
No 476
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.34 E-value=0.18 Score=37.20 Aligned_cols=86 Identities=12% Similarity=0.056 Sum_probs=58.1
Q ss_pred EEEEEEecCChhhhccchhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccccccCHHHH
Q 042687 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVTRWLRELRDHADSNIVIMMAGNKSDLNHLRAVAAEDA 140 (217)
Q Consensus 61 ~~~~i~D~~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 140 (217)
+.+.++|+|+.. .......+..+|.+|++.... ..+...+..++..+.........+.+|+|+.+... ....
T Consensus 119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~--- 190 (245)
T 3ea0_A 119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS--- 190 (245)
T ss_dssp CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH---
T ss_pred CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH---
Confidence 457799998754 223455677899999998875 66777777777777765433456789999998643 2222
Q ss_pred HHHHHHcCCeEEEe
Q 042687 141 QILAEKEGLSFLET 154 (217)
Q Consensus 141 ~~~~~~~~~~~~~v 154 (217)
+.+...++.+++.+
T Consensus 191 ~~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 191 DEIEKVIGRPISKR 204 (245)
T ss_dssp HHHHHHHTSCEEEE
T ss_pred HHHHHHhCCCeEEE
Confidence 33444567777655
No 477
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.0094 Score=48.61 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-.|++.||||+|||+|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 478
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.31 E-value=0.0092 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 479
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.28 E-value=0.013 Score=45.69 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
+...|+|.|++|+|||+|++.+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998653
No 480
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.27 E-value=0.013 Score=43.39 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCCHHHHHhHHhc
Q 042687 11 YLFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 11 ~~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
...-|+|.|.+||||||+++.|..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.0099 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHhHHhcCcc
Q 042687 15 IVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
++|+|+.|+|||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999987543
No 482
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.26 E-value=0.013 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
..+|+|+|++|+||||+...|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999987654
No 483
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.25 E-value=0.011 Score=45.94 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhc
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 484
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.24 E-value=0.011 Score=45.95 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-|+|+|++|||||||..+|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999998653
No 485
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.011 Score=48.36 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.--|++.|+||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999998763
No 486
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.17 E-value=0.013 Score=42.70 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHhHHh
Q 042687 14 KIVLIGDSGVGKSNILSRFT 33 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~ 33 (217)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35788999999999999874
No 487
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.15 E-value=0.013 Score=46.15 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-|+|+|++|||||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998653
No 488
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.11 E-value=0.0052 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.|++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999998763
No 489
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.11 E-value=0.012 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.+++.|++|+|||+|++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988764
No 490
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.08 E-value=0.01 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHhHHhcC
Q 042687 12 LFKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 12 ~~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
.-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998753
No 491
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.012 Score=47.36 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.|++.|+||+|||.|.+++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 46999999999999999998763
No 492
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.06 E-value=0.093 Score=41.68 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHhHHhc
Q 042687 14 KIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~ 34 (217)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 578999999999999999864
No 493
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.06 E-value=0.015 Score=41.24 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcCc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~~ 36 (217)
.-|+|.|++|+|||||...|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 468999999999999999998744
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.02 E-value=0.015 Score=43.42 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
..|+|.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999999988653
No 495
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.00 E-value=0.014 Score=42.83 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHhHHhc
Q 042687 13 FKIVLIGDSGVGKSNILSRFTR 34 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~ 34 (217)
.-|+|.|.+||||||+++.|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999998854
No 496
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.99 E-value=0.013 Score=46.44 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.|+|.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998763
No 497
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.97 E-value=0.015 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHhHHhcCcc
Q 042687 14 KIVLIGDSGVGKSNILSRFTRNEF 37 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~~~ 37 (217)
.++|+|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999987544
No 498
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.96 E-value=0.014 Score=45.68 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHhHHhcC
Q 042687 14 KIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 14 ~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-++|.|+.|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 499
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.96 E-value=0.013 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHhHHhcC
Q 042687 13 FKIVLIGDSGVGKSNILSRFTRN 35 (217)
Q Consensus 13 ~~i~i~G~~~~GKstLi~~l~~~ 35 (217)
-.++|.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998653
No 500
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.95 E-value=0.0018 Score=48.18 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHhHHhcCc
Q 042687 15 IVLIGDSGVGKSNILSRFTRNE 36 (217)
Q Consensus 15 i~i~G~~~~GKstLi~~l~~~~ 36 (217)
++|+|+.|+|||||++.+.+-.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999999987643
Done!