BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042693
(71 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|157690190|gb|ABV65782.1| RNA polymerase beta'' subunit, partial (chloroplast) [Tapiscia
sinensis]
Length = 1280
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++GN LVTFIYEK RS D+T+
Sbjct: 1056 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGNTLVTFIYEKSRSGDITQ 1115
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1116 GLPKVEQVLEVRSIDSI 1132
>gi|336239391|gb|AEI27553.1| RNA polymerase beta subunit [Barbeya oleoides]
Length = 1265
Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L KGN LVTFIYEK RS D+T+
Sbjct: 1044 HLKSGQVIIVQIDSVVIRSAKPYLATPGATVHGHYGEILSKGNTLVTFIYEKSRSGDITQ 1103
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1104 GLPKVEQVLEVRSIDSI 1120
>gi|81176239|ref|YP_398318.1| RNA polymerase beta'' subunit [Lactuca sativa]
gi|85700399|sp|Q56P11.2|RPOC2_LACSA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|78675157|dbj|BAE47583.1| RNA polymerase beta'' subunit [Lactuca sativa]
gi|88656972|gb|ABD47222.1| RNA polymerase beta' subunit [Lactuca sativa]
Length = 1381
Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158
>gi|90403635|gb|ABD93711.1| RNA polymerase beta chain [Spinacia oleracea]
Length = 839
Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 51/78 (65%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
THLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T
Sbjct: 610 THLKSGQVLIVQFDSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDIT 669
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 670 QGLPKVEQVLEVRSIDSI 687
>gi|61992023|gb|AAX58144.1| RNA polymerase beta II subunit [Lactuca sativa]
Length = 1386
Score = 78.6 bits (192), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158
>gi|343482040|gb|AEM44882.1| RNA polymerase beta chain [Hydrangea sp. DES-2011]
Length = 495
Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 311 HLKSGQVLIVQIDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 370
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 371 GLPKVEQVLEVRSIDSI 387
>gi|133448|sp|P11704.1|RPOC2_SPIOL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|7636095|emb|CAB88715.1| RNA polymerase beta'' subunit [Spinacia oleracea]
Length = 1361
Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 51/78 (65%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
THLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T
Sbjct: 1072 THLKSGQVLIVQFDSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDIT 1131
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 1132 QGLPKVEQVLEVRSIDSI 1149
>gi|126022792|ref|NP_054922.2| RNA polymerase beta'' subunit [Spinacia oleracea]
Length = 1357
Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 51/78 (65%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
THLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T
Sbjct: 1068 THLKSGQVLIVQFDSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDIT 1127
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 1128 QGLPKVEQVLEVRSIDSI 1145
>gi|146261537|gb|ABQ15078.1| RNA polymerase beta' subunit [Ribes americanum]
Length = 808
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 629 HLKSGQVLIVQVDSIVIRSAKTYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 688
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 689 GLPKVEQVLEVRSIDSI 705
>gi|146261515|gb|ABQ15067.1| RNA polymerase beta' subunit [Hamamelis japonica]
Length = 860
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 632 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 691
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 692 GLPKVEQVLEVRSIDSI 708
>gi|343482038|gb|AEM44881.1| RNA polymerase beta chain [Petalonyx parryi]
Length = 515
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 332 HLKSGQVLIVQIDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 391
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 392 GLPKVEQVLEVRSIDSI 408
>gi|90403821|gb|ABD93804.1| RNA polymerase beta chain [Hamamelis mollis]
Length = 863
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 635 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 694
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 695 GLPKVEQVLEVRSIDSI 711
>gi|157690142|gb|ABV65758.1| RNA polymerase beta'' subunit, partial (chloroplast) [Myrtus
communis]
Length = 1284
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L+KG LVTFIYEK RS D+T+
Sbjct: 1060 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYKGGTLVTFIYEKSRSGDITQ 1119
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1120 GLPKVEQVLEMRSIDSI 1136
>gi|157690134|gb|ABV65754.1| RNA polymerase beta'' subunit, partial (chloroplast) [Lythrum
flagellare]
Length = 1283
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1059 HLKSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1118
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1119 GLPKVEQVLEVRSIDSI 1135
>gi|146261501|gb|ABQ15060.1| RNA polymerase beta' subunit [Cercidiphyllum japonicum]
Length = 798
Score = 77.8 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 633 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 692
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 693 GLPKVEQVLEVRSIDSI 709
>gi|146261511|gb|ABQ15065.1| RNA polymerase beta' subunit [Exbucklandia populnea]
Length = 802
Score = 77.8 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 597 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 656
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 657 GLPKVEQVLEVRSIDSI 673
>gi|146261505|gb|ABQ15062.1| RNA polymerase beta' subunit [Corylopsis pauciflora]
Length = 821
Score = 77.8 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 617 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 676
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 677 GLPKVEQVLEVRSIDSI 693
>gi|157690138|gb|ABV65756.1| RNA polymerase beta'' subunit, partial (chloroplast) [Melianthus
comosus]
Length = 1267
Score = 77.8 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1046 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1105
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1106 GLPKVEQVLEVRSIDSI 1122
>gi|308096583|gb|ADO13868.1| RNA polymerase beta subunit [Phyllonoma ruscifolia]
Length = 1182
Score = 77.8 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LI+Q ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1073 HLKSGQVLIIQGDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1132
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1133 GLPKVEQVLEVRSIDSI 1149
>gi|90403925|gb|ABD93856.1| RNA polymerase beta chain [Berberidopsis beckleri]
Length = 829
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 601 HLKSGQVLIVQVDSVVIRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 660
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 661 GLPKVEQVLEVRSIDSI 677
>gi|157690026|gb|ABV65700.1| RNA polymerase beta'' subunit (chloroplast) [Berberidopsis corallina]
Length = 1389
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKSGQVLIVQVDYVVIRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1143
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160
>gi|290489532|gb|ADD31150.1| RNA polymerase beta'' subunit protein [Aucuba japonica]
Length = 1390
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQVLIVQVDSVVIRSAKSYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|296936661|gb|ADH94333.1| RNA polymerase beta' subunit [Syzygium cumini]
Length = 1392
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1148
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 GLPKVEQVLEVRSIDSI 1165
>gi|336239419|gb|AEI27567.1| RNA polymerase beta subunit [Pilea cadierei]
Length = 1259
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYGA L +G+ LVTFIYEK RS D+T+
Sbjct: 1048 HLKSGQVIIVQIDSVVIRSAKAYFATPGATVHGHYGAILFEGDTLVTFIYEKSRSGDITQ 1107
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1108 GLPKVEQVLEVRSIDSI 1124
>gi|146261519|gb|ABQ15069.1| RNA polymerase beta' subunit [Itea virginica]
Length = 839
Score = 77.4 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 626 HLKSGQVLIVQVDSVVIRSAKTYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 685
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 686 GLPKVEQVLEVRSIDSI 702
>gi|157690060|gb|ABV65717.1| RNA polymerase beta'' subunit, partial (chloroplast) [Carica papaya]
Length = 1163
Score = 77.4 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1056 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1115
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1116 GLPKVEQVLEVRSIDSI 1132
>gi|108802633|ref|YP_636289.1| RNA polymerase beta'' subunit [Eucalyptus globulus subsp. globulus]
gi|90111008|sp|Q49L08.1|RPOC2_EUCGG RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|60460799|gb|AAX21019.1| RNA polymerase beta' subunit [Eucalyptus globulus subsp. globulus]
Length = 1392
Score = 77.4 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1148
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 GLPKVEQVLEVRSIDSI 1165
>gi|90403843|gb|ABD93815.1| RNA polymerase beta chain [Guaiacum officinale]
Length = 879
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +H+G+ LVTF+YEK RS D+T+
Sbjct: 652 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGKIIHEGDILVTFLYEKSRSGDITQ 711
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 712 GLPKVEQVLEVRSIDSI 728
>gi|90403735|gb|ABD93761.1| RNA polymerase beta chain [Helianthus annuus]
Length = 861
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LI+Q ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 633 HLKSGQVLILQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 692
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 693 GLPKVEQVLEVRSIDSI 709
>gi|336239401|gb|AEI27558.1| RNA polymerase beta subunit [Dirachma socotrana]
Length = 1252
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L KG+ LVTFIYEK RS D+T+
Sbjct: 1041 HLKSGQVIIVQMDSVVIRSAKSYLATPGATVHGHYGEILSKGDTLVTFIYEKSRSGDITQ 1100
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1101 GLPKVEQVLEVRSIDSI 1117
>gi|75317327|sp|Q4VZP3.1|RPOC2_CUCSA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|67511388|emb|CAJ00748.1| RNA polymerase beta'' chain [Cucumis sativus]
gi|74027091|gb|AAZ94641.1| RNA polymerase beta II subunit [Cucumis sativus]
gi|115432794|gb|ABI97407.1| RNA polymerase beta' subunit [Cucumis sativus]
gi|115498293|gb|ABI98735.1| RNA polymerase beta' subunit [Cucumis sativus]
Length = 1394
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS QI+IVQ AT GA RHYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1091 HLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQ 1150
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1151 GLPKVEQVLEVRSIDSI 1167
>gi|157690084|gb|ABV65729.1| RNA polymerase beta'' subunit, partial (chloroplast) [Datisca
cannabina]
Length = 1280
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS QI+IVQ AT GA RHYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1059 HLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQ 1118
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1119 GLPKVEQVLEVRSIDSI 1135
>gi|126165906|ref|YP_247589.2| RNA polymerase beta'' subunit [Cucumis sativus]
Length = 1390
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS QI+IVQ AT GA RHYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|443267297|ref|YP_007375033.1| RNA polymerase beta' subunit [Quercus rubra]
gi|441421912|gb|AGC31236.1| RNA polymerase beta' subunit [Quercus rubra]
Length = 1395
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1092 HLKSGQVLIVQIDSVVIRSAKAYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSRDITQ 1151
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1152 GLPKVEQVLEVRSIDSI 1168
>gi|157690028|gb|ABV65701.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ailanthus
altissima]
Length = 1279
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1069 HLKSGQVLIVQVDSVVIRSAKPYLATPGATLHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1128
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1129 GLPKVEQVLEVRSIDSI 1145
>gi|157690164|gb|ABV65769.1| RNA polymerase beta'' subunit (chloroplast) [Quercus nigra]
Length = 1396
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1093 HLKSGQVLIVQIDSVVIRSAKAYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSRDITQ 1152
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1153 GLPKVEQVLEVRSIDSI 1169
>gi|317046163|ref|YP_004072452.1| RNA polymerase beta II subunit [Corynocarpus laevigata]
gi|309252880|gb|ADO60300.1| RNA polymerase beta II subunit [Corynocarpus laevigata]
Length = 1380
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS QILIVQ AT GA RHYG L++G+ LVTF+YEK RS D+T+
Sbjct: 1077 HLKSGQILIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFVYEKSRSGDITQ 1136
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1137 GLPKVEQVLEVRSIDSI 1153
>gi|313183983|ref|YP_004021140.1| RNA polymerase beta' subunit [Castanea mollissima]
gi|309321510|gb|ADO65050.1| RNA polymerase beta' subunit [Castanea mollissima]
Length = 1395
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1092 HLKSGQVLIVQIDSVVIRSAKAYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSRDITQ 1151
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1152 GLPKVEQVLEVRSIDSI 1168
>gi|323690363|gb|ADX99114.1| RNA polymerase beta II subunit [Lampayo castellani]
Length = 701
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 439 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSADITQ 498
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 499 GLPKVEQVLEVRSIDSI 515
>gi|372863434|gb|AEX99503.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum indicum]
Length = 1383
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LI+Q ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKSGQVLILQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1143
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160
>gi|441403281|ref|YP_007353755.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum x
morifolium]
gi|375298824|gb|AFA45263.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum x
morifolium]
Length = 1383
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LI+Q ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKSGQVLILQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1143
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160
>gi|334701791|ref|YP_004564361.1| RNA polymerase beta' subunit (chloroplast) [Ageratina adenophora]
gi|334089662|gb|AEG64545.1| RNA polymerase beta' subunit (chloroplast) [Ageratina adenophora]
Length = 1385
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LI+Q ATPGA HYG L+ G+ LVTFIYEK RS D+T+
Sbjct: 1086 HLKSGQVLIIQVDSVVIRSAKPYLATPGATVHGHYGKILYDGDTLVTFIYEKSRSGDITQ 1145
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 GLPKVEQVLEVRSIDSI 1162
>gi|157690188|gb|ABV65781.1| RNA polymerase beta'' subunit, partial (chloroplast) [Swietenia
macrophylla]
Length = 1291
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1067 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1126
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1127 GLPKVEQVLEVRSIDSI 1143
>gi|114329646|ref|YP_740465.1| RNA polymerase beta'' subunit [Citrus sinensis]
gi|122166193|sp|Q09MI8.1|RPOC2_CITSI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|113952612|gb|ABI49010.1| RNA polymerase beta'' subunit [Citrus sinensis]
Length = 1403
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 51/77 (66%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q+LIVQ ATPGA HYGA L++G+ LVTFIYEK RS D+T+
Sbjct: 1094 YLKSGQVLIVQVNSVVIRSAKPYLATPGATVHGHYGAILYEGDTLVTFIYEKSRSGDITQ 1153
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1154 GLPKVEQVLEVRSLDSI 1170
>gi|146261513|gb|ABQ15066.1| RNA polymerase beta' subunit [Haloragis aspera]
Length = 841
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 636 HLKSGQVLIVQVDSIIIRSAKPYLATPGATVHGHYGKILYEGDTLITFIYEKSRSGDITQ 695
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 696 GLPKVEQVLEVRSIDSI 712
>gi|452849040|ref|YP_007474718.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum indicum]
gi|372863195|gb|AEX99267.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum indicum]
Length = 1383
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LI+Q ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKSGQVLILQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1143
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160
>gi|371925927|gb|AEX57717.1| RNA polymerase beta' subunit (chloroplast) [Theobroma cacao]
gi|371926337|gb|AEX58122.1| RNA polymerase beta' subunit (chloroplast) [Theobroma cacao]
gi|371926419|gb|AEX58203.1| RNA polymerase beta' subunit (chloroplast) [Theobroma cacao]
gi|371926501|gb|AEX58284.1| RNA polymerase beta' subunit (chloroplast) [Theobroma cacao]
gi|371926583|gb|AEX58365.1| RNA polymerase beta' subunit (chloroplast) [Theobroma cacao]
Length = 1391
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1145
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 GLPKVEQVLEVRSIDSI 1162
>gi|328924774|gb|ADO64880.2| RNA polymerase beta' subunit [Theobroma cacao]
Length = 1389
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1145
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 GLPKVEQVLEVRSIDSI 1162
>gi|157690082|gb|ABV65728.1| RNA polymerase beta'' subunit, partial (chloroplast) [Cupaniopsis
anacardioides]
Length = 1266
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1056 HLKSGQVLIVQVGSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1115
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1116 GLPKVEQVLEVRSIDSI 1132
>gi|313199693|ref|YP_004021307.1| RNA polymerase beta' subunit [Theobroma cacao]
gi|309321257|gb|ADO64800.1| RNA polymerase beta' subunit [Theobroma cacao]
gi|371926009|gb|AEX57798.1| RNA polymerase beta' subunit (chloroplast) [Theobroma cacao]
gi|371926091|gb|AEX57879.1| RNA polymerase beta' subunit (chloroplast) [Theobroma cacao]
gi|371926173|gb|AEX57960.1| RNA polymerase beta' subunit (chloroplast) [Theobroma cacao]
gi|371926255|gb|AEX58041.1| RNA polymerase beta' subunit (chloroplast) [Theobroma cacao]
gi|371926747|gb|AEX58527.1| RNA polymerase beta' subunit (chloroplast) [Theobroma cacao]
Length = 1391
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1145
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 GLPKVEQVLEVRSIDSI 1162
>gi|157690146|gb|ABV65760.1| RNA polymerase beta'' subunit, partial (chloroplast) [Nitraria
retusa]
Length = 1272
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L+ G+ LVTFIYEK RS D+T+
Sbjct: 1048 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYAGDTLVTFIYEKSRSGDITQ 1107
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1108 GLPKVEQVLEVRSIDSI 1124
>gi|90403715|gb|ABD93751.1| RNA polymerase beta chain [Heuchera sp. Qiu 95076]
Length = 857
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 629 HLKSGQVLIVQVDSIVIRSAKTYLATPGATVRGHYGEILYEGDTLVTFIYEKSRSGDITQ 688
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 689 GLPKVEQVLEVRSIDSI 705
>gi|94502480|ref|YP_588106.1| RNA polymerase beta'' subunit [Helianthus annuus]
gi|122179584|sp|Q1KXX0.1|RPOC2_HELAN RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|88656884|gb|ABD47135.1| RNA polymerase beta subunit [Helianthus annuus]
Length = 1362
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LI+Q ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLILQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158
>gi|114329736|ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occidentalis]
gi|122166045|sp|Q09G56.1|RPOC2_PLAOC RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|114054374|gb|ABI49768.1| RNA polymerase beta'' subunit [Platanus occidentalis]
Length = 1387
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L+KG+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQ 1143
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160
>gi|183217730|ref|YP_001837349.1| RNA polymerase beta'' subunit [Guizotia abyssinica]
gi|212288320|sp|B2LMI2.1|RPOC2_GUIAB RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|179366245|gb|ACB86516.1| RNA polymerase beta' subunit [Guizotia abyssinica]
Length = 1381
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LI+Q ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLILQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158
>gi|167391795|ref|YP_001671673.1| RNA polymerase beta'' subunit [Carica papaya]
gi|212277035|sp|B1A925.1|RPOC2_CARPA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|166344122|gb|ABY86772.1| RNA polymerase beta'' chain [Carica papaya]
Length = 1387
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158
>gi|371926665|gb|AEX58446.1| RNA polymerase beta' subunit (chloroplast) [Theobroma grandiflorum]
Length = 1391
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1145
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 GLPKVEQVLEVRSIDSI 1162
>gi|157690198|gb|ABV65786.1| RNA polymerase beta'' subunit, partial (chloroplast) [Tropaeolum
majus]
Length = 1274
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1046 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1105
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1106 GLPKVEQVLEVRSIDSI 1122
>gi|90403875|gb|ABD93831.1| RNA polymerase beta chain [Ceratophyllum demersum]
Length = 791
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 563 HIKSGQVLIVQFDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 622
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 623 GLPKVEQVLEVRSIDSI 639
>gi|377657741|gb|AFB74304.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Portulaca oleracea]
Length = 839
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+
Sbjct: 609 QPHLKSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDI 668
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 669 TQGLPKVEQVLEVRSIDSI 687
>gi|157690106|gb|ABV65740.1| RNA polymerase beta'' subunit (chloroplast) [Heuchera sanguinea]
Length = 1376
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1078 HLKSGQVLIVQVDSIVIRSAKTYLATPGATVRGHYGEILYEGDTLVTFIYEKSRSGDITQ 1137
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1138 GLPKVEQVLEVRSIDSI 1154
>gi|90403657|gb|ABD93722.1| RNA polymerase beta chain [Platanus occidentalis]
Length = 863
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L+KG+ LVTFIYEK RS D+T+
Sbjct: 635 HLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQ 694
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 695 GLPKVEQVLEVRSIDSI 711
>gi|157690052|gb|ABV65713.1| RNA polymerase beta'' subunit, partial (chloroplast) [Bursera
simaruba]
Length = 1274
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1056 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQ 1115
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1116 GLPKVEQVLEVRSIDSI 1132
>gi|90403877|gb|ABD93832.1| RNA polymerase beta chain [Ceratophyllum submersum]
Length = 806
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 578 HIKSGQVLIVQFDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 637
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 638 GLPKVEQVLEVRSIDSI 654
>gi|157690166|gb|ABV65770.1| RNA polymerase beta'' subunit, partial (chloroplast) [Quillaja
saponaria]
Length = 1313
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1092 HLKSGQVLIVQVDSVVIRSANPYLATPGATVHGHYGEILYEGDILVTFIYEKSRSGDITQ 1151
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1152 GLPKVEQVLEVRSIDSI 1168
>gi|90403719|gb|ABD93753.1| RNA polymerase beta chain [Cornus florida]
Length = 812
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 584 HLKSGQVLIVQIDSLVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQ 643
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 644 GLPKVEQVLEVRSIDSI 660
>gi|157690076|gb|ABV65725.1| RNA polymerase beta'' subunit (chloroplast) [Cornus florida]
Length = 1391
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQVLIVQIDSLVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|227481109|emb|CAP62488.1| RNA polymerase beta' subunit-2 [Ceratophyllum demersum]
Length = 1390
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HIKSGQVLIVQFDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|157690150|gb|ABV65762.1| RNA polymerase beta'' subunit (chloroplast) [Oxalis latifolia]
Length = 1370
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1067 HLKSGQVIIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1126
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1127 GLPKVEQVLEVRSIDSI 1143
>gi|159161150|ref|YP_001542437.1| RNA polymerase beta'' subunit [Ceratophyllum demersum]
gi|212277669|sp|A8SE78.1|RPOC2_CERDE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|148508433|gb|ABQ81440.1| RNA polymerase beta'' subunit [Ceratophyllum demersum]
Length = 1390
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HIKSGQVLIVQFDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|90403717|gb|ABD93752.1| RNA polymerase beta chain [Cercis canadensis]
Length = 864
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 636 HLKSGQVLIVQMDSVVIRSANAYLATPGATVHGHYGEILYEGDILVTFIYEKSRSGDITQ 695
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 696 GLPKVEQVLEVRSIDSI 712
>gi|308096561|gb|ADO13864.1| RNA polymerase beta subunit [Forgesia racemosa]
Length = 1142
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
+HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIY K RS D+T
Sbjct: 897 SHLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYHKSRSGDIT 956
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 957 QGLPKVEQVLEVRSIDSI 974
>gi|435856363|ref|YP_007317238.1| RNA polymerase beta'' subunit (chloroplast) [Camellia sinensis]
gi|430728262|gb|AGA55586.1| RNA polymerase beta'' subunit (chloroplast) [Camellia sinensis]
Length = 1378
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG ++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKSGQVLIVQVDSVVIRSTKPYLATPGATVHGHYGEIFYEGDTLVTFIYEKSRSGDITQ 1143
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160
>gi|157690156|gb|ABV65765.1| RNA polymerase beta'' subunit, partial (chloroplast) [Picramnia
polyantha]
Length = 1275
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS QILIVQ ATPGA HYG L +G LVTFIYEK RS D+T+
Sbjct: 1054 HLKSGQILIVQVDSVVIRSAKPYLATPGATVHGHYGKILSEGETLVTFIYEKSRSGDITQ 1113
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1114 GLPKVEQVLEVRSVDSI 1130
>gi|146261527|gb|ABQ15073.1| RNA polymerase beta' subunit [Paeonia brownii]
Length = 862
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS QILIVQ ATPGA HYG L+KG+ LVTFIYEK +S D+T+
Sbjct: 634 YLKSGQILIVQVDSVVIRSTKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSKSGDITQ 693
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 694 GLPKVEQVLEVRSIDSI 710
>gi|90403885|gb|ABD93836.1| RNA polymerase beta chain [Oxalis sp. Qiu 94028]
Length = 827
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 624 HLKSGQVIIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 683
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 684 GLPKVEQVLEVRSIDSI 700
>gi|157690046|gb|ABV65710.1| RNA polymerase beta'' subunit, partial (chloroplast) [Bixa orellana]
Length = 1266
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L+ G+ LVTFIYEK RS D+T+
Sbjct: 1056 HLKSGQVLIVQVDSLVIRSAKPYLATPGATVHGHYGEILYDGDTLVTFIYEKSRSGDITQ 1115
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1116 GLPKVEQVLEVRSIDSI 1132
>gi|90403713|gb|ABD93750.1| RNA polymerase beta chain [Phytolacca americana]
Length = 862
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 634 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 693
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 694 GLPKVEQVLEVRSIDSI 710
>gi|146261517|gb|ABQ15068.1| RNA polymerase beta' subunit [Heuchera micrantha]
Length = 802
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTF+YEK RS D+T+
Sbjct: 589 HLKSGQVLIVQVDSIVIRSAKTYLATPGATVRGHYGEILYEGDTLVTFVYEKSRSGDITQ 648
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 649 GLPKVEQVLEVRSIDSI 665
>gi|308096642|gb|ADO13882.1| RNA polymerase beta subunit [Citronella suaveolens]
Length = 1169
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG ++G+ LVTFIYEK RS D+T+
Sbjct: 1060 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEIFYEGDTLVTFIYEKSRSGDITQ 1119
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1120 GLPKVEQVLEVRSVDSI 1136
>gi|90403721|gb|ABD93754.1| RNA polymerase beta chain [Camellia japonica]
Length = 863
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG ++G+ LVTFIYEK RS D+T+
Sbjct: 635 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEIFYEGDTLVTFIYEKSRSGDITQ 694
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 695 GLPKVEQVLEVRSIDSI 711
>gi|377657729|gb|AFB74298.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Didierea madagascariensis]
Length = 839
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 611 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 670
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 671 GLPKVEQVLEVRSIDSI 687
>gi|139389254|ref|YP_001123020.1| RNA polymerase beta subunit-2 [Aethionema grandiflorum]
gi|212288314|sp|A4QJI9.1|RPOC2_AETGR RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|134286216|dbj|BAF49844.1| RNA polymerase beta subunit-2 [Aethionema grandiflorum]
Length = 1383
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLIVQMDSVVLRCAKPYLATPGAKVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158
>gi|323690391|gb|ADX99128.1| RNA polymerase beta II subunit [Petrea volubilis]
Length = 682
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 420 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 479
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 480 GLPKVEQVLEVRSIDSI 496
>gi|323690365|gb|ADX99115.1| RNA polymerase beta II subunit [Diostea juncea]
Length = 699
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 437 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 496
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 497 GLPKVEQVLEVRSIDSI 513
>gi|157690162|gb|ABV65768.1| RNA polymerase beta'' subunit, partial (chloroplast) [Qualea
parviflora]
Length = 1272
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1051 HLKSGQVLIVQADSVVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQ 1110
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1111 GLPKVEQVLEVRSIDSI 1127
>gi|114329958|ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestica]
gi|122165971|sp|Q09FX1.1|RPOC2_NANDO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|114054460|gb|ABI49853.1| RNA polymerase beta'' subunit [Nandina domestica]
Length = 1377
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV ATPGA HYG L+KG+ LVTFIYEK RS D+T+
Sbjct: 1074 HLKSGQVIIVHVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQ 1133
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1134 GLPKVEQVLEVRSIDSI 1150
>gi|334701609|ref|YP_004563994.1| RNA polymerase beta'' chain [Olea woodiana subsp. woodiana]
gi|334084649|emb|CBS29340.1| RNA polymerase beta'' chain [Olea woodiana subsp. woodiana]
Length = 1394
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+L+VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1091 HLKSGQVLLVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQ 1150
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1151 GLPKVEQVLEVRSIDSI 1167
>gi|157690176|gb|ABV65775.1| RNA polymerase beta'' subunit, partial (chloroplast) [Spiraea
tomentosa]
Length = 1264
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
+HLKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T
Sbjct: 1050 SHLKSGQVIIVQMDSVVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDIT 1109
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 1110 QGLPKVEQVLEVRSIDSI 1127
>gi|157690186|gb|ABV65780.1| RNA polymerase beta'' subunit, partial (chloroplast) [Suriana
maritima]
Length = 1274
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1063 HLKSGQVIIVQGNSVVIRSANSYLATPGATVHGHYGEILYQGDILVTFIYEKSRSGDITQ 1122
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1123 GLPKVEQVLEVRSIDSI 1139
>gi|157690136|gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloroplast) [Manihot
esculenta]
Length = 1281
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV ATPGA HYG L++GN LVTFIYEK RS D+T+
Sbjct: 1058 HLKSGQVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILYEGNTLVTFIYEKSRSGDITQ 1117
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1118 GLPKVEQVLEVRSIDSI 1134
>gi|157690078|gb|ABV65726.1| RNA polymerase beta'' subunit, partial (chloroplast) [Crossosoma
californicum]
Length = 1266
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L+KG+ LVTFIY K RS D+T+
Sbjct: 1043 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYVKSRSGDITQ 1102
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1103 GLPKVEQVLEVRSIDSI 1119
>gi|377657733|gb|AFB74300.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Mollugo verticillata]
Length = 844
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 616 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 675
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 676 GLPKVEQVLEVRSIDSI 692
>gi|157690154|gb|ABV65764.1| RNA polymerase beta'' subunit, partial (chloroplast) [Phyllanthus
calycinus]
Length = 1271
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1050 HLKSGQVIIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1109
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1110 GLPKVEQVLEVRSIDSI 1126
>gi|377657725|gb|AFB74296.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Anredera baselloides]
Length = 839
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 611 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 670
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 671 GLPKVEQVLEVRSIDSI 687
>gi|377829865|ref|YP_005296090.1| rpoC2 gene product (chloroplast) [Pentactina rupicola]
gi|371532613|gb|AEX31723.1| RNA polymerase beta' subunit-2 (chloroplast) [Pentactina rupicola]
Length = 1372
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
+HLKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T
Sbjct: 1086 SHLKSGQVIIVQMDSVVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDIT 1145
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 1146 QGLPKVEQVLEVRSIDSI 1163
>gi|114107123|ref|YP_740107.1| RNA polymerase beta' subunit [Daucus carota]
gi|122239969|sp|Q0G9X2.1|RPOC2_DAUCA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|113200898|gb|ABI32414.1| RNA polymerase beta' subunit [Daucus carota]
Length = 1390
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV+ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1085 HLKSGQVLIVKMDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1144
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1145 GLPKVEQVLEVRSIDSI 1161
>gi|323690385|gb|ADX99125.1| RNA polymerase beta II subunit [Stachytarpheta cayennensis]
Length = 683
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQA TPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 426 HLKSGQVILVQADSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 485
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 486 GLPKVEQVLEVRSIDSI 502
>gi|169794063|ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot esculenta]
gi|212288328|sp|B1NWE0.1|RPOC2_MANES RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|157695875|gb|ABV66144.1| RNA polymerase beta subunit [Manihot esculenta]
Length = 1393
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV ATPGA HYG L++GN LVTFIYEK RS D+T+
Sbjct: 1088 HLKSGQVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILYEGNTLVTFIYEKSRSGDITQ 1147
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1148 GLPKVEQVLEVRSIDSI 1164
>gi|408899959|gb|AFU94775.1| RpoC2, partial (chloroplast) [Averrhoa carambola]
Length = 1630
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IVQ ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|336239417|gb|AEI27566.1| RNA polymerase beta subunit [Neillia thibetica]
Length = 1258
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
+HLKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T
Sbjct: 1046 SHLKSGQVIIVQIDSVVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDIT 1105
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 1106 QGLPKVEQVLEVRSIDSI 1123
>gi|157690072|gb|ABV65723.1| RNA polymerase beta'' subunit, partial (chloroplast) [Connarus
conchocarpus]
Length = 1277
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1053 HLKSGQVIIVQVDSVVIRSAKPYLATPGATVQGHYGEILYEGDTLVTFIYEKSRSGDITQ 1112
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1113 GLPKVEQVLEVRSIDSI 1129
>gi|156594775|gb|ABU85219.1| RNA polymerase beta subunit [Anethum graveolens]
Length = 1386
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV+ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1085 HLKSGQVLIVKMDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1144
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1145 GLPKVEQVLEVRSIDSI 1161
>gi|90403665|gb|ABD93726.1| RNA polymerase beta chain [Ranunculus sp. Qiu 95024]
Length = 862
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 634 HLKSGQVLIVDVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 693
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 694 GLPKVEQVLEVRSIDSI 710
>gi|326909382|ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasiliensis]
gi|308523496|gb|ADO33546.1| RNA polymerase beta'' subunit [Hevea brasiliensis]
Length = 1395
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV ATPGA HYG L++GN LVTFIYEK RS D+T+
Sbjct: 1090 HLKSGQVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILYEGNTLVTFIYEKSRSGDITQ 1149
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 GLPKVEQVLEVRSIDSI 1166
>gi|323690373|gb|ADX99119.1| RNA polymerase beta II subunit [Citharexylum montevidense]
Length = 287
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 26 HLKSGQVILVQVDSVIIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 85
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 86 GLPKVEQVLEVRSIDSI 102
>gi|377657737|gb|AFB74302.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Portulacaria afra]
Length = 841
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 613 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 672
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 673 GLPKVEQVLEVRSIDSI 689
>gi|69216859|gb|AAZ03982.1| RNA polymerase beta'' chain [Ranunculus macranthus]
Length = 1376
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLIVDVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158
>gi|346578181|ref|YP_004841773.1| RNA polymerase beta'' subunit [Cucumis melo subsp. melo]
gi|344030481|gb|AEM76882.1| RNA polymerase beta'' subunit [Cucumis melo subsp. melo]
Length = 1396
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS QI+IV+ AT GA RHYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1093 HLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEKSRSGDITQ 1152
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1153 GLPKVEQVLEVRSIDSI 1169
>gi|122893980|ref|YP_001004176.1| RNA polymerase beta' subunit [Ranunculus macranthus]
gi|212288348|sp|A1XGM8.1|RPOC2_RANMC RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|85540794|gb|ABC70746.1| RNA polymerase beta' subunit [Ranunculus macranthus]
Length = 1383
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HLKSGQVLIVDVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155
>gi|313183812|ref|YP_004021655.1| RNA polymerase beta' subunit [Prunus persica]
gi|309321424|gb|ADO64965.1| RNA polymerase beta' subunit [Prunus persica]
Length = 1368
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
+HLKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T
Sbjct: 1082 SHLKSGQVIIVQIDSVVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDIT 1141
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 1142 QGLPKVEQVLEVRSIDSI 1159
>gi|323690375|gb|ADX99120.1| RNA polymerase beta II subunit [Baillonia amabilis]
Length = 479
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 286 HLKSGQVILVQVDSVIIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 345
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 346 GLPKVEQVLEVRSIDSI 362
>gi|323690377|gb|ADX99121.1| RNA polymerase beta II subunit [Citharexylum ligustrinum]
Length = 703
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 441 HLKSGQVILVQVDSVIIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 500
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 501 GLPKVEQVLEVRSIDSI 517
>gi|290489530|gb|ADD31149.1| RNA polymerase beta'' subunit protein [Antirrhinum majus]
Length = 1361
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1073 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQ 1132
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1133 GLPKVEQVLEVRSVDAI 1149
>gi|90403645|gb|ABD93716.1| RNA polymerase beta chain [Buxus sempervirens]
Length = 865
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 637 HLKSGQVLIVHIDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 696
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 697 GLPKVEQVLEVRSIDSI 713
>gi|90403653|gb|ABD93720.1| RNA polymerase beta chain [Sabia sp. Qiu 91025]
Length = 863
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 635 HLKSGQVLIVHVDSLVIRSAKPYLATPGATIHGHYGQILYEGDTLVTFIYEKSRSGDITQ 694
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 695 GLPKVEQVLEVRSIDSI 711
>gi|359422133|ref|YP_004935542.1| RNA polymerase beta'' subunit (chloroplast) [Eleutherococcus
senticosus]
gi|347448196|gb|AEO92608.1| RNA polymerase beta'' subunit (chloroplast) [Eleutherococcus
senticosus]
Length = 1387
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKPGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1143
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160
>gi|157690066|gb|ABV65720.1| RNA polymerase beta'' subunit, partial (chloroplast) [Cephalotus
follicularis]
Length = 1257
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L++G+ LVTF+YEK RS D+T+
Sbjct: 1050 HLKSGQVIIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFLYEKSRSGDITQ 1109
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1110 GLPKVEQVLEVRSIDSI 1126
>gi|146261543|gb|ABQ15081.1| RNA polymerase beta' subunit [Sedum rubrotinctum]
Length = 854
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG + G+ LVTFIYEK RS D+T+
Sbjct: 633 HLKSGQVLIVQVDSIIIRSAKPYLATPGATVHGHYGEIFYTGDTLVTFIYEKSRSGDITQ 692
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 693 GLPKVEQVLEVRSIDSI 709
>gi|336239425|gb|AEI27570.1| RNA polymerase beta subunit [Trema angustifolia]
Length = 1252
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1041 HLKSGQVIIVQIDSVIIRPAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQ 1100
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1101 GLPKVEQVLEVRSIDSI 1117
>gi|90403733|gb|ABD93760.1| RNA polymerase beta chain [Hedera helix]
Length = 863
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 635 HLKPGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 694
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 695 GLPKVEQVLEVRSIDSI 711
>gi|157690178|gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloroplast) [Stachyurus
praecox]
Length = 1280
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L+KG+ LVTFIY K RS D+T+
Sbjct: 1056 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYVKSRSGDITQ 1115
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1116 GLPKVEQVLEVRSIDSI 1132
>gi|68053284|sp|Q68S16.1|RPOC2_PANGI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|51235303|gb|AAT98499.1| RNA polymerase beta II subunit [Panax ginseng]
Length = 1387
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKPGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1143
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160
>gi|157690206|gb|ABV65790.1| RNA polymerase beta'' subunit, partial (chloroplast) [Zelkova
serrata]
Length = 1247
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1025 HLKSGQVIIVQMDSVVIRLAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQ 1084
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1085 GLPKVEQVLEVRSVDSI 1101
>gi|126165903|ref|YP_086956.2| RNA polymerase beta'' subunit [Panax ginseng]
Length = 1383
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1080 HLKPGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1139
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1140 GLPKVEQVLEVRSIDSI 1156
>gi|229577744|ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis saniculifolia]
gi|226933872|gb|ACO92005.1| RNA polymerase beta'' subunit [Megaleranthis saniculifolia]
Length = 1383
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1080 HLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1139
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1140 GLPKVEQVLEVRSIDSI 1156
>gi|157690030|gb|ABV65702.1| RNA polymerase beta'' subunit, partial (chloroplast) [Albizia
julibrissin]
Length = 1321
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 51/80 (63%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ HLKS Q+LIVQ ATPGA HYG L++G+ L+TFIYEK RS D
Sbjct: 1106 NEPHLKSGQVLIVQMDSVVIRSANPYLATPGATVHGHYGEMLYEGDILLTFIYEKSRSGD 1165
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+RS D I
Sbjct: 1166 ITQGLPKVEQVLEVRSIDSI 1185
>gi|149390530|ref|YP_001294174.1| RNA polymerase beta' subunit [Buxus microphylla]
gi|212277016|sp|A6MM26.1|RPOC2_BUXMI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|146762275|gb|ABQ45239.1| RNA polymerase beta' subunit [Buxus microphylla]
Length = 1391
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 HLKSGQVLIVHIDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1145
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 GLPKVEQVLEVRSIDSI 1162
>gi|334702313|ref|YP_004465176.1| RNA polymerase beta' subunit [Jacobaea vulgaris]
gi|308156071|gb|ADO15399.1| RNA polymerase beta' subunit [Jacobaea vulgaris]
Length = 1380
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS Q+LI+Q ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HFKSGQVLILQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155
>gi|343482044|gb|AEM44884.1| RNA polymerase beta chain [Hydrophyllum fendleri]
Length = 455
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 271 HLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 330
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 331 GLPKVEQVLEVRSIDSI 347
>gi|90403723|gb|ABD93755.1| RNA polymerase beta chain [Impatiens pallida]
Length = 815
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 50/80 (62%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ HLKS Q+LIVQ ATPGA HYG +++G LVTFIYEK RS D
Sbjct: 584 NEPHLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEIIYEGATLVTFIYEKSRSGD 643
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+RS D I
Sbjct: 644 ITQGLPKVEQVLEVRSIDSI 663
>gi|334361939|ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]
gi|224474124|gb|ACN49313.1| RNA polymerase beta' subunit [Nelumbo lutea]
gi|383286882|gb|AFH01531.1| RNA polymerase beta'' subunit (chloroplast) [Nelumbo lutea]
Length = 1390
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|378758476|ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum indicum]
gi|378747302|gb|AEO92696.2| RNA polymerase beta'' subunit (chloroplast) [Sesamum indicum]
Length = 1390
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1087 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|336239427|gb|AEI27571.1| RNA polymerase beta subunit [Ulmus macrocarpa]
Length = 1243
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1032 HLKSGQVIIVQMDSVVIRLAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQ 1091
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1092 GLPKVEQVLEVRSVDSI 1108
>gi|323690389|gb|ADX99127.1| RNA polymerase beta II subunit [Recordia boliviana]
Length = 404
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQA TPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 228 HLKSGQVILVQADSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 287
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 288 GLPKVEQVLEVRSIDSI 304
>gi|90403725|gb|ABD93756.1| RNA polymerase beta chain [Eucommia ulmoides]
Length = 812
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ A PGA HYG L++G+ VTFIYEK RS D+T+
Sbjct: 584 HLKSGQVLIVQVDSIVIRSAKPYLAIPGATVHGHYGEILYEGDTFVTFIYEKARSGDITQ 643
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 644 GLPKVEQVLEVRSMDSI 660
>gi|408900021|gb|AFU94806.1| RpoC2, partial (chloroplast) [Phyllanthus urinaria]
Length = 1615
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IVQ ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|157690180|gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Staphylea colchica]
Length = 1390
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L+KG+ LVTFIY K RS D+T+
Sbjct: 1087 HLKSGQVLIVQVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYVKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|90403859|gb|ABD93823.1| RNA polymerase beta chain [Galbulimima belgraveana]
Length = 811
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 591 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 650
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 651 GLPKVEQVLEVRSIDSI 667
>gi|334362039|ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucifera]
gi|224474212|gb|ACN49398.1| RNA polymerase beta' subunit [Nelumbo nucifera]
gi|290489544|gb|ADD31156.1| RNA polymerase beta'' subunit protein [Nelumbo nucifera]
gi|383286787|gb|AFH01437.1| RNA polymerase beta'' subunit (chloroplast) [Nelumbo nucifera]
Length = 1390
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|194132100|gb|ACF33354.1| RNA polymerase beta' subunit [Gonystylus bancanus]
Length = 1370
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1091 HLKSGQVLIVHVDSIVIRTAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1150
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1151 GLPKVEQVLEVRSIDSI 1167
>gi|90403659|gb|ABD93723.1| RNA polymerase beta chain [Nelumbo nucifera]
Length = 866
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 638 HLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 697
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 698 GLPKVEQVLEVRSIDSI 714
>gi|157690098|gb|ABV65736.1| RNA polymerase beta'' subunit, partial (chloroplast) [Floerkea
proserpinacoides]
Length = 1257
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIY+K RS D+T+
Sbjct: 1048 HLKSGQVLIVQVESVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYKKSRSGDITQ 1107
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1108 GLPKVEQVLEVRSIDSI 1124
>gi|336239403|gb|AEI27559.1| RNA polymerase beta subunit [Dryas octopetala]
Length = 1258
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
+HLKS Q++IVQ ATPGA HYG + +G+ LVTFIYEK RS D+T
Sbjct: 1046 SHLKSGQVIIVQIDSVVIRSAKPYLATPGATVHGHYGEIISEGDTLVTFIYEKSRSGDIT 1105
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 1106 QGLPKVEQVLEVRSIDSI 1123
>gi|157690102|gb|ABV65738.1| RNA polymerase beta'' subunit (chloroplast) [Gunnera manicata]
Length = 1386
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPG HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQVIIVQVGSVVIRSAKPYLATPGTTVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|146261521|gb|ABQ15070.1| RNA polymerase beta' subunit [Kalanchoe daigremontiana]
Length = 815
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+ IVQ ATPGA HYG L G+ LVTFIYEK RS D+T+
Sbjct: 602 HLKSGQVFIVQVDSIIIRSAKPYLATPGATVHGHYGEILSTGDTLVTFIYEKSRSGDITQ 661
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 662 GLPKVEQVLEVRSIDSI 678
>gi|157690144|gb|ABV65759.1| RNA polymerase beta'' subunit, partial (chloroplast) [Neurada
procumbens]
Length = 1265
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L G+ LVTFIYEK RS D+T+
Sbjct: 1055 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILSGGDTLVTFIYEKSRSGDITQ 1114
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1115 GLPKVEQVLEVRSIDSI 1131
>gi|90403811|gb|ABD93799.1| RNA polymerase beta chain [Staphylea trifolia]
Length = 866
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L+KG+ LVTFIY K RS D+T+
Sbjct: 638 HLKSGQVLIVQVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYVKSRSGDITQ 697
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 698 GLPKVEQVLEVRSIDSI 714
>gi|365823316|ref|YP_003359349.2| RNA polymerase beta II subunit (chloroplast) [Olea europaea]
gi|363413081|gb|ADA69916.2| RNA polymerase beta II subunit (chloroplast) [Olea europaea]
Length = 1390
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1087 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|334084563|emb|CBR30396.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
Length = 1394
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1091 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQ 1150
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1151 GLPKVEQVLEVRSIDSI 1167
>gi|330850733|ref|YP_004376411.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
gi|334701878|ref|YP_004564487.1| RNA polymerase beta'' chain [Olea europaea subsp. maroccana]
gi|328795423|emb|CBR30304.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
gi|334084391|emb|CBR23819.1| RNA polymerase beta'' chain [Olea europaea subsp. cuspidata]
gi|334084854|emb|CBS29226.1| RNA polymerase beta'' chain [Olea europaea subsp. maroccana]
gi|334085026|emb|CBR23728.1| RNA polymerase beta'' chain [Olea europaea subsp. cuspidata]
Length = 1394
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1091 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQ 1150
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1151 GLPKVEQVLEVRSIDSI 1167
>gi|291059243|gb|ADD72079.1| RNA polymerase beta' subunit [Olea europaea]
gi|334084477|emb|CBR24610.1| RNA polymerase beta'' chain [Olea europaea subsp. europaea]
Length = 1394
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1091 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQ 1150
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1151 GLPKVEQVLEVRSIDSI 1167
>gi|308096663|gb|ADO13888.1| RNA polymerase beta subunit [Dampiera diversifolia]
Length = 1185
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPG HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1052 HLKSGQVIIVQVDSVVIRSAKPYLATPGTTVHGHYGQILYEGDTLVTFIYEKSRSGDITQ 1111
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1112 GLPKVEQVLEVRSIDSI 1128
>gi|290489536|gb|ADD31152.1| RNA polymerase beta'' subunit protein [Ehretia acuminata]
Length = 1381
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|146261541|gb|ABQ15080.1| RNA polymerase beta' subunit [Saxifraga stolonifera]
Length = 830
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G LVTFIYEK RS D+T+
Sbjct: 620 HLKSGQVLIVQVDSIVIRSAKTYLATPGANVRGHYGEILYEGGTLVTFIYEKSRSGDITQ 679
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 680 GLPKVEQVLEVRSIDSI 696
>gi|334700272|ref|YP_004563771.1| RNA polymerase beta'' chain [Olea europaea subsp. cuspidata]
gi|334084940|emb|CBJ04288.1| RNA polymerase beta'' chain [Olea europaea subsp. cuspidata]
Length = 1394
Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1091 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQ 1150
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1151 GLPKVEQVLEVRSIDSI 1167
>gi|90403929|gb|ABD93858.1| RNA polymerase beta chain [Mauloutchia chapelieri]
Length = 759
Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 583 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGKILYEGDTLVTFIYEKSRSGDITQ 642
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 643 GLPKVEQVLEVRSIDSI 659
>gi|90403641|gb|ABD93714.1| RNA polymerase beta chain [Gunnera monoica]
Length = 866
Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPG HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 638 HLKSGQVIIVQVGSVVIRSAKPYLATPGTTVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 697
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 698 GLPKVEQVLEVRSIDSI 714
>gi|114804255|ref|YP_762251.1| RNA polymerase beta' subunit-2 [Morus indica]
gi|122166815|sp|Q09X27.1|RPOC2_MORIN RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|78100307|gb|ABB20948.1| RNA polymerase beta' subunit-2 [Morus indica]
Length = 1389
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1086 HLKSGQVIIVQIDSVVIRSAKSYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQ 1145
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 GLPKVEQVLEVRSIDSI 1162
>gi|146261529|gb|ABQ15074.1| RNA polymerase beta' subunit [Penthorum sedoides]
Length = 842
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q+LIVQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 632 YLKSGQVLIVQVDSIVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQ 691
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 692 GLPKVEQVLEVRSIDSI 708
>gi|90403905|gb|ABD93846.1| RNA polymerase beta chain [Petrophile canescens]
Length = 789
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 599 HLKSGQVLIVHVDSLVIRSAKSYLATPGASVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 658
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 659 GLPKVEQVLEVRSIDSI 675
>gi|290489552|gb|ADD31160.1| RNA polymerase beta'' subunit protein [Ximenia americana]
Length = 1391
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1092 HLKSGQVIIVQVNSVVIRLAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQ 1151
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1152 GLPKVEQVLEVRSVDSI 1168
>gi|224117690|ref|XP_002331607.1| predicted protein [Populus trichocarpa]
gi|222874003|gb|EEF11134.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 49/80 (61%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ LKS Q+LIV A TPGA HYG L++G+ LVTFIYEK RS D
Sbjct: 4 NEPRLKSGQVLIVHADSVILRLAKPYLTTPGATVHGHYGEILYEGDTLVTFIYEKSRSGD 63
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+RS D I
Sbjct: 64 ITQGLPKVEQVLEVRSIDSI 83
>gi|90403655|gb|ABD93721.1| RNA polymerase beta chain [Grevillea robusta]
Length = 854
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 643 HLKSGQVLIVHVDSLVIRSAKSYLATPGASVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 702
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 703 GLPKVEQVLEVRSIDSI 719
>gi|308096627|gb|ADO13878.1| RNA polymerase beta subunit [Ilex crenata]
Length = 1182
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1073 HLKSGQVLIVQGDSVVIRSAKPYLATPGATVNGHYGEILYEGDILVTFIYEKSRSGDITQ 1132
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1133 GLPKVEQVLEVRSINSI 1149
>gi|336239421|gb|AEI27568.1| RNA polymerase beta subunit [Rhamnus utilis]
Length = 1250
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q++IVQ ATPGA HYG L KG+ LVTFIYEK RS D+T+
Sbjct: 1039 YLKSGQVIIVQIDSVVIRSAKPYLATPGATVHGHYGEILSKGDTLVTFIYEKSRSGDITQ 1098
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1099 GLPKVEQVLEVRSIDSI 1115
>gi|90403893|gb|ABD93840.1| RNA polymerase beta chain [Myristica fragrans]
Length = 774
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 584 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGKILYEGDTLVTFIYEKSRSGDITQ 643
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 644 GLPKVEQVLEVRSIDSI 660
>gi|323149072|ref|YP_004222636.1| RNA polymerase beta' subunit [Anthriscus cerefolium]
gi|289645565|gb|ADD13628.1| RNA polymerase beta' subunit [Anthriscus cerefolium]
Length = 1390
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV+ ATPGA HYG L++G+ LVTF+YEK RS D+T+
Sbjct: 1085 HLKSGQVLIVKKDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFLYEKSRSGDITQ 1144
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1145 GLPKVEQVLEVRSIDSI 1161
>gi|343482052|gb|AEM44888.1| RNA polymerase beta chain [Opilia amentacea]
Length = 397
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTF+YEK +S D+T+
Sbjct: 222 HLKSGQVLIVQVNSVIIRSAKPYLATPGATVRGHYGEILYQGDTLVTFLYEKSKSGDITQ 281
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 282 GLPKVEQVLEVRSIDSI 298
>gi|336239415|gb|AEI27565.1| RNA polymerase beta subunit [Hovenia trichocarpa var. robusta]
Length = 1254
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q++IVQ ATPGA HYG L KG+ LVTFIYEK RS D+T+
Sbjct: 1043 YLKSGQVIIVQIDSAVIRSAKPYLATPGATVHGHYGEILSKGDTLVTFIYEKSRSGDITQ 1102
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1103 GLPKVEQVLEVRSIDSI 1119
>gi|170784779|ref|YP_001718695.1| RNA polymerase beta' subunit [Trachelium caeruleum]
gi|156598861|gb|ABU85683.1| RNA polymerase beta subunit [Trachelium caeruleum]
gi|157267527|gb|ABV26520.1| RNA polymerase beta' subunit (chloroplast) [Trachelium caeruleum]
Length = 1394
Score = 75.1 bits (183), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA YG L+KG+ LVTFIYEK RS D+T+
Sbjct: 1089 HLKSGQVIIVQVDSVIIRSAKPYLATPGATVHGDYGKILYKGDTLVTFIYEKSRSGDITQ 1148
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 GLPKVEQVLEVRSIDSI 1165
>gi|336239411|gb|AEI27563.1| RNA polymerase beta subunit [Gouania mauritiana]
Length = 1246
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q++IVQ ATPGA HYG L KG+ LVTFIYEK RS D+T+
Sbjct: 1035 YLKSGQVIIVQIDSVVIRSAKPYLATPGATVHGHYGEILSKGDTLVTFIYEKSRSGDITQ 1094
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1095 GLPKVEQVLEVRSIDSI 1111
>gi|290489546|gb|ADD31157.1| RNA polymerase beta'' subunit protein [Nerium oleander]
Length = 1385
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+ VQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVFFVQADSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKARSGDITQ 1141
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158
>gi|90403709|gb|ABD93748.1| RNA polymerase beta chain [Magnolia tripetala]
Length = 859
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 631 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 690
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 691 GLPKVEQVLEVRSIDSI 707
>gi|408899979|gb|AFU94785.1| RpoC2, partial (chloroplast) [Dichapetalum zenkeri]
Length = 1625
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q +IV ATPGA RHYG L++G+ L+TFIYEK RS D+
Sbjct: 1293 HXXLKSGQAIIVHVGSVVIRSAKPYLATPGATVHRHYGEILYEGDTLITFIYEKKRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|335352796|gb|AEH42620.1| RNA polymerase beta subunit [Garcinia mangostana]
Length = 1334
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV+A TPGA HYG L KG+ LVTFIYEK RS D+T+
Sbjct: 1040 HLKSGQVVIVRADSVVIRSAKPYLATPGATVHGHYGEILSKGDTLVTFIYEKSRSGDITQ 1099
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1100 GLPKVEQVLEVRSIDSI 1116
>gi|157690062|gb|ABV65718.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ceanothus
prostratus]
Length = 1281
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q++IVQ ATPGA HYG L KG+ LVTFIYEK RS D+T+
Sbjct: 1057 YLKSGQVIIVQIDSVVIRSAKPYLATPGATVHGHYGEILSKGDTLVTFIYEKSRSGDITQ 1116
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1117 GLPKVEQVLEVRSIDSI 1133
>gi|343482042|gb|AEM44883.1| RNA polymerase beta chain [Curtisia dentata]
Length = 436
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG ++G+ LVTFIYEK RS D+T+
Sbjct: 256 HLKSGQVLIVQIDSVVIRSAKPYLATPGATVHGHYGEIRYEGDTLVTFIYEKSRSGDITQ 315
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 316 GLPKVEQVLEVRSIDSI 332
>gi|139390338|ref|YP_001122936.1| RNA polymerase beta subunit-2 [Aethionema cordifolium]
gi|212288313|sp|A4QJA5.1|RPOC2_AETCO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|134286131|dbj|BAF49760.1| RNA polymerase beta subunit-2 [Aethionema cordifolium]
Length = 1385
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKSGQALIVQMDSVVIRSAKPYLATPGAKVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1143
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160
>gi|90403731|gb|ABD93759.1| RNA polymerase beta chain [Ilex sp. Qiu 94038]
Length = 866
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 638 HLKSGQVLIVQGDSVVIRSAKPYLATPGATVNGHYGEILYEGDILVTFIYEKSRSGDITQ 697
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 698 GLPKVEQVLEVRSINSI 714
>gi|323690359|gb|ADX99112.1| RNA polymerase beta II subunit [Dipyrena glaberrima]
Length = 701
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 439 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 498
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 499 GLPKVEQVFEVRSIDSI 515
>gi|323690353|gb|ADX99109.1| RNA polymerase beta II subunit [Aloysia citrodora]
Length = 700
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 438 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 497
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 498 GLPKVEQVFEVRSIDSI 514
>gi|372862157|gb|AEX98241.1| RNA polymerase beta' subunit (chloroplast) [Magnolia liliiflora]
Length = 1382
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155
>gi|323690347|gb|ADX99106.1| RNA polymerase beta II subunit [Xeroaloysia ovatifolia]
Length = 680
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 418 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 477
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 478 GLPKVEQVFEVRSIDSI 494
>gi|323690343|gb|ADX99104.1| RNA polymerase beta II subunit [Lippia integrifolia]
Length = 682
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 420 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 479
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 480 GLPKVEQVFEVRSIDSI 496
>gi|90403917|gb|ABD93852.1| RNA polymerase beta chain [Degeneria vitiensis]
Length = 765
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 578 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 637
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 638 GLPKVEQVLEVRSIDSI 654
>gi|364283974|ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygrometrica]
gi|340549397|gb|AEK53219.1| RNA polymerase beta'' subunit (chloroplast) [Boea hygrometrica]
Length = 1381
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1078 HLKSGQVILVQVDSVVIRHAKAYLATPGATVHGHYGKILYEGDTLITFIYEKSRSGDITQ 1137
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1138 GLPKVEQVLEVRSIDSI 1154
>gi|90403729|gb|ABD93758.1| RNA polymerase beta chain [Lamium sp. Qiu 95019]
Length = 866
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 638 HLKSGQVILVQVDSVVIRSAKTYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQ 697
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 698 GLPKVEQVLEVRSIDSI 714
>gi|323690349|gb|ADX99107.1| RNA polymerase beta II subunit [Aloysia virgata]
Length = 683
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 421 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 480
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 481 GLPKVEQVFEVRSIDSI 497
>gi|452848846|ref|YP_007474526.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia grandiflora]
gi|372862833|gb|AEX98909.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia grandiflora]
gi|372863003|gb|AEX99077.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia grandiflora]
Length = 1382
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155
>gi|372862241|gb|AEX98324.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia denudata]
Length = 1382
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155
>gi|400256578|ref|YP_006576105.1| RpoC2 (chloroplast) [Magnolia denudata]
gi|343887529|gb|AEM65208.1| RpoC2 [Magnolia denudata]
Length = 1382
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155
>gi|157690184|gb|ABV65779.1| RNA polymerase beta'' subunit, partial (chloroplast) [Stylobasium
spathulatum]
Length = 1266
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1058 HQKSGQVLIVQGNSVVIRSANSYLATPGATVHGHYGEILYQGDILVTFIYEKSRSGDITQ 1117
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1118 GLPKVEQVLEVRSIDSI 1134
>gi|90403881|gb|ABD93834.1| RNA polymerase beta chain [Ascarina sp. Thien 500]
Length = 804
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 614 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 673
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 674 GLPKVEQVLEVRSIDSI 690
>gi|342316195|ref|YP_004769704.1| RNA polymerase beta' subunit [Magnolia kwangsiensis]
gi|302424170|gb|ADL39046.1| RNA polymerase beta' subunit [Magnolia kwangsiensis]
Length = 1382
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155
>gi|90403691|gb|ABD93739.1| RNA polymerase beta chain [Sarcandra chloranthoides]
Length = 849
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 621 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 680
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 681 GLPKVEQVLEVRSIDSI 697
>gi|323690357|gb|ADX99111.1| RNA polymerase beta II subunit [Mulguraea aspera]
Length = 534
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 283 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 342
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 343 GLPKVEQVFEVRSIDSI 359
>gi|323690345|gb|ADX99105.1| RNA polymerase beta II subunit [Phyla lanceolata]
Length = 698
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 439 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 498
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 499 GLPKVEQVFEVRSIDSI 515
>gi|323690341|gb|ADX99103.1| RNA polymerase beta II subunit [Lantana camara]
Length = 701
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 439 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 498
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 499 GLPKVEQVFEVRSIDSI 515
>gi|157690056|gb|ABV65715.1| RNA polymerase beta'' subunit, partial (chloroplast) [Cannabis
sativa]
Length = 1275
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1060 HLKSGQVIIVQIDSVVIRLAKPYLATPGATVHGHYGEKLSEGDTLVTFIYEKSRSGDITQ 1119
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1120 GLPKVEQVLEVRSIDSI 1136
>gi|377657731|gb|AFB74299.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Maihuenia poeppigii]
Length = 840
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG ++G+ LVTFIYEK RS D+T+
Sbjct: 612 HLKSGQVLIVQFDSVVIRSAKPYLATPGARVHGHYGEIFYEGDTLVTFIYEKSRSGDITQ 671
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 672 GLPKVEQVLEVRSIDSI 688
>gi|290489538|gb|ADD31153.1| RNA polymerase beta'' subunit protein [Ilex cornuta]
Length = 1384
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQVLIVQGDSVVIRSAKPYLATPGATVNGHYGEILYEGDILVTFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1147 GLPKVEQVLEVRSINSI 1163
>gi|157690064|gb|ABV65719.1| RNA polymerase beta'' subunit, partial (chloroplast) [Celtis
occidentalis]
Length = 1259
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1052 HLKSGQVIIVQIDSVIIRSAKSYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQ 1111
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1112 GLPKVEQVLEVRSIDSI 1128
>gi|452848761|ref|YP_007474442.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis
subsp. biloba]
gi|372862494|gb|AEX98574.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis
subsp. biloba]
gi|372862579|gb|AEX98658.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis
subsp. biloba]
gi|372862664|gb|AEX98742.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis
subsp. biloba]
Length = 1382
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155
>gi|452848678|ref|YP_007474360.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis]
gi|372862411|gb|AEX98492.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis]
Length = 1382
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155
>gi|323690339|gb|ADX99102.1| RNA polymerase beta II subunit [Lippia salviifolia]
Length = 699
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 437 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 496
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 497 GLPKVEQVFEVRSIDSI 513
>gi|90403745|gb|ABD93766.1| RNA polymerase beta chain [Nepenthes sp. 'Kosobe']
Length = 856
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS QI+IVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 628 HLKSGQIIIVQVDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 687
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 688 GLPKVEQVLEVRSIESI 704
>gi|336239395|gb|AEI27555.1| RNA polymerase beta subunit [Celtis tetrandra]
Length = 1251
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q++IVQ ATPGA HYG L KG+ LVTFIYEK RS D+T+
Sbjct: 1040 YLKSGQVIIVQIDSAVIRSAKPYLATPGATVHGHYGEILSKGDTLVTFIYEKSRSGDITQ 1099
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1100 GLPKVEQVLEVRSIDSI 1116
>gi|401879732|gb|AFQ30919.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza]
Length = 1395
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 50/79 (63%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+
Sbjct: 1088 HLKLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDI 1147
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1148 TQGLPKVEQVLEVRSIDSI 1166
>gi|157690172|gb|ABV65773.1| RNA polymerase beta'' subunit, partial (chloroplast) [Schinus
terebinthifolius]
Length = 1281
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/76 (53%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1061 LKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1120
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1121 LPKVEQVLEVRSIDSI 1136
>gi|90403823|gb|ABD93805.1| RNA polymerase beta chain [Sterculia balanghas]
Length = 869
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+ IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 641 HLKSGQVFIVQIDSVVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQ 700
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 701 GLPKVEQVLEVRSIDSI 717
>gi|90403661|gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata]
Length = 861
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPG HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 633 HLKSGQVLIVHVDSLVIRSAKPYLATPGTTVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 692
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 693 GLPKVEQVLEVRSIDSI 709
>gi|336239397|gb|AEI27556.1| RNA polymerase beta subunit [Maclura tricuspidata]
Length = 1255
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK+ Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1044 HLKAGQVIIVQIDSVVIRPAKSYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQ 1103
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1104 GLPKVEQVLEVRSIDSI 1120
>gi|323690355|gb|ADX99110.1| RNA polymerase beta II subunit [Junellia juniperina]
Length = 684
Score = 74.3 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 439 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 498
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 499 GLPKVEQVFEVRSIDSI 515
>gi|157690148|gb|ABV65761.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ochna
mossambicensis]
Length = 1268
Score = 74.3 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1046 HLKSGQVIIVHVDSVVLRSAKLYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1105
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1106 GLPKVEQVLEVRSIDSI 1122
>gi|157690042|gb|ABV65708.1| RNA polymerase beta'' subunit, partial (chloroplast) [Batis maritima]
Length = 1256
Score = 74.3 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 48/75 (64%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+LIVQ ATPGA HYG L+KG+ LVTFIYEK RS D+T+ L
Sbjct: 1047 KSGQVLIVQIDSVVLRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQGL 1106
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 1107 PKVEQVLEVRSIDSI 1121
>gi|346683284|ref|YP_004842229.1| RNA polymerase beta' subunit [Pyrus pyrifolia]
gi|345433551|dbj|BAK69373.1| RNA polymerase beta' subunit [Pyrus pyrifolia]
Length = 1373
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 49/78 (62%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
+HLKS Q++IVQ ATPGA HYG L +G+ VTFIYEK RS D+T
Sbjct: 1087 SHLKSGQVIIVQIDSVVIRSAKPYLATPGATVHGHYGEILSEGDTFVTFIYEKSRSGDIT 1146
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 1147 QGLPKVEQVLEVRSIDSI 1164
>gi|255565784|ref|XP_002523881.1| DNA-directed RNA polymerase beta chain, putative [Ricinus
communis]
gi|223536811|gb|EEF38450.1| DNA-directed RNA polymerase beta chain, putative [Ricinus
communis]
Length = 360
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++I+ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 7 HLKSGQVIIIHIGSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 66
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 67 GLPKVEQVLEVRSIDSI 83
>gi|146261497|gb|ABQ15058.1| RNA polymerase beta' subunit [Altingia excelsa]
Length = 840
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 635 HLKSGQVLIVQVDSVVIRSAKPYLATTGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 694
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 695 GLPKVEQVLEVRSIDSI 711
>gi|146261523|gb|ABQ15071.1| RNA polymerase beta' subunit [Liquidambar styraciflua]
Length = 830
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 620 HLKSGQVLIVQVDSVVIRSAKPYLATTGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 679
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 680 GLPKVEQVLEVRSIDSI 696
>gi|90403705|gb|ABD93746.1| RNA polymerase beta chain [Eupomatia bennettii]
Length = 859
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 631 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 690
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 691 GLPKVEQVLEVRSIDSI 707
>gi|343482054|gb|AEM44889.1| RNA polymerase beta chain [Galium aparine]
Length = 462
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ THLKS Q++ VQ ATPGA HYG ++G+ LVTFIYEK RS D
Sbjct: 272 NRTHLKSGQVIFVQVDCVVIRSAKPYLATPGATVHGHYGEIRYEGDILVTFIYEKSRSGD 331
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+RS D I
Sbjct: 332 ITQGLPKVEQVLEVRSIDSI 351
>gi|408899991|gb|AFU94791.1| RpoC2, partial (chloroplast) [Garcinia mangostana]
Length = 1612
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV+A TPGA HYG L KG+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVVIVRADSVVIRSAKPYLATPGATVHGHYGEILSKGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|323690351|gb|ADX99108.1| RNA polymerase beta II subunit [Acantholippia salsoloides]
Length = 701
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++++Q ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 439 HLKSGQVILIQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 498
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 499 GLPKVEQVFEVRSIDSI 515
>gi|157690132|gb|ABV65753.1| RNA polymerase beta'' subunit (chloroplast) [Liquidambar styraciflua]
Length = 1390
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQVLIVQVDSVVIRSAKPYLATTGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|372450129|ref|YP_005090168.1| rpoC2 gene product (chloroplast) [Ricinus communis]
gi|339516155|gb|AEJ82545.1| RNA polymerase beta subunit [Ricinus communis]
Length = 1405
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++I+ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1100 HLKSGQVIIIHIGSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1159
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1160 GLPKVEQVLEVRSIDSI 1176
>gi|90403649|gb|ABD93718.1| RNA polymerase beta chain [Tetracentron sinense]
Length = 792
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 564 HLKSGQVLIVHVDALVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 623
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 624 GLPKVEQVLEVRSIESI 640
>gi|90403873|gb|ABD93830.1| RNA polymerase beta chain [Illicium floridanum]
Length = 754
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS Q+LIV ATPGA HYG L++GN LVTFIYEK RS D+T+
Sbjct: 562 IKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGNTLVTFIYEKSRSGDITQG 621
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 622 LPKVEQVLEVRSIDSI 637
>gi|408899975|gb|AFU94783.1| RpoC2, partial (chloroplast) [Clusia rosea]
Length = 1614
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV+ ATPGA HYG L KG+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVVIVRPDSVVIRSAKPYLATPGATVHGHYGEILSKGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|343482050|gb|AEM44887.1| RNA polymerase beta chain [Hydrolea ovata]
Length = 465
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQ ATPGA HYG L++G+ LVTF+YEK RS D+T+
Sbjct: 281 HLKSGQVIFVQVDSVVIRSAKPYLATPGATLHGHYGEILYQGDTLVTFLYEKSRSGDITQ 340
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 341 GLPKVEQVLEVRSIDSI 357
>gi|157690120|gb|ABV65747.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ixerba
brexioides]
Length = 1283
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1062 HLKSGQVLIVQIDSVVIRSAKPYLATPGATVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1121
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1122 GLPKVEQVLEVRSIDSI 1138
>gi|90403803|gb|ABD93795.1| RNA polymerase beta chain [Saruma henryi]
Length = 799
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 603 HIKSGQVLIVHLDSLVIRSAKPHLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 662
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 663 GLPKVEQVLEVRSIDSI 679
>gi|90403801|gb|ABD93794.1| RNA polymerase beta chain [Asarum canadense]
Length = 822
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 594 HIKSGQVLIVHLDSLVIRSAKPHLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 653
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 654 GLPKVEQVLEVRSIDSI 670
>gi|90403647|gb|ABD93717.1| RNA polymerase beta chain [Trochodendron aralioides]
Length = 865
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 637 HLKSGQVLIVHVDALVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 696
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 697 GLPKVEQVLEVRSIESI 713
>gi|90403643|gb|ABD93715.1| RNA polymerase beta chain [Pachysandra procumbens]
Length = 866
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 636 HLKFKSGQVLIVHIDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 695
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 696 TQGLPKVEQVLEVRSIDSI 714
>gi|90403669|gb|ABD93728.1| RNA polymerase beta chain [Akebia quinata]
Length = 861
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPG HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 633 HLKSGQVLIVHVNSLVIRSAKPYLATPGTTVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 692
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 693 GLPKVEQVLEVRSVDSI 709
>gi|408899993|gb|AFU94792.1| RpoC2, partial (chloroplast) [Goupia glabra]
Length = 1630
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHVDSVVLRSAKLYLATPGATVHGHYGKILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|90403671|gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra]
Length = 796
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+L V ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 637 HLKSGQVLTVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 696
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 697 GLPKVEQVLEVRSIDSI 713
>gi|335352801|gb|AEH42623.1| RNA polymerase beta subunit [Mammea americana]
Length = 282
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 12 HLKSGQVVIVHLDSVVIRSAKSYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 71
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 72 GLPKVEQVLEVRSIDSI 88
>gi|157690196|gb|ABV65785.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron
aralioides]
Length = 1381
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 HLKSGQVLIVHVDALVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1145
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1146 GLPKVEQVLEVRSIESI 1162
>gi|408900033|gb|AFU94812.1| RpoC2, partial (chloroplast) [Schistostemon retusum]
Length = 1630
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHLDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|7525023|ref|NP_051049.1| RNA polymerase beta'' subunit [Arabidopsis thaliana]
gi|6685905|sp|P56764.1|RPOC2_ARATH RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|5881684|dbj|BAA84375.1| RNA polymerase beta' subunit-2 [Arabidopsis thaliana]
Length = 1376
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1080 HLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQ 1139
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1140 GLPKVEQVLEVRSIDSI 1156
>gi|336239405|gb|AEI27560.1| RNA polymerase beta subunit [Elaeagnus bockii]
Length = 1254
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK+ Q++IVQ A PGA HYG L KG+ L+TFIYEK RS D+T+
Sbjct: 1043 HLKAGQVIIVQMDSVVIRSAKPYLAAPGATVHGHYGEILSKGDTLITFIYEKSRSGDITQ 1102
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1103 GLPKVEQVLEVRSIDSI 1119
>gi|157690086|gb|ABV65730.1| RNA polymerase beta'' subunit, partial (chloroplast) [Elaeagnus sp.
Nickrent 2898]
Length = 1260
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK+ Q++IVQ A PGA HYG L KG+ L+TFIYEK RS D+T+
Sbjct: 1057 HLKAGQVIIVQMDSVVIRSAKPYLAAPGATVHGHYGEILSKGDTLITFIYEKSRSGDITQ 1116
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1117 GLPKVEQVLEVRSIDSI 1133
>gi|90403819|gb|ABD93803.1| RNA polymerase beta chain [Simmondsia chinensis]
Length = 800
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 573 LKSGQVLIVQIDSVVIRSAKSYLATPGATVHGHYGEIVYEGDTLVTFIYEKSRSGDITQG 632
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 633 LPKVEQVLEVRSIDSI 648
>gi|90403755|gb|ABD93771.1| RNA polymerase beta chain [Lardizabala biternata]
Length = 861
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPG HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 633 HLKSGQVLIVHVNSLVIRSAKPYLATPGTTVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 692
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 693 GLPKVEQVLEVRSVDSI 709
>gi|90403707|gb|ABD93747.1| RNA polymerase beta chain [Liriodendron chinense]
Length = 839
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 611 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQ 670
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 671 GLPKVEQVLEVRSIDSI 687
>gi|323690383|gb|ADX99124.1| RNA polymerase beta II subunit [Bouchea fluminensis]
Length = 688
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q+++VQA TPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 426 YLKSGQVILVQADSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 485
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 486 GLPKVEQVLEVRSIDSI 502
>gi|157690092|gb|ABV65733.1| RNA polymerase beta'' subunit, partial (chloroplast) [Eucryphia
lucida]
Length = 1280
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++I+Q TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1056 HLKSGQVIILQVDSVVIRSAKPYLVTPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1115
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1116 GLPKVEQVLEVRSIDSI 1132
>gi|157690058|gb|ABV65716.1| RNA polymerase beta'' subunit, partial (chloroplast) [Cynophalla
flexuosa]
Length = 1263
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1054 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1113
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1114 GLPKVEQVLEVRSIDSI 1130
>gi|90403829|gb|ABD93808.1| RNA polymerase beta chain [Anemopsis californica]
Length = 825
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+L V ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 632 HIKSGQVLTVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 691
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 692 GLPKVEQVLEVRSIDSI 708
>gi|90403693|gb|ABD93740.1| RNA polymerase beta chain [Hedyosmum arborescens]
Length = 869
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H++S Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 641 HIQSGQVLIVHVDSLVIRFAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 700
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 701 GLPKVEQVLEVRSIDSI 717
>gi|91983982|ref|YP_567066.1| RNA polymerase beta'' subunit [Vitis vinifera]
gi|122224053|sp|Q0ZJ30.1|RPOC2_VITVI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|91701640|gb|ABE47524.1| RNA polymerase beta' subunit [Vitis vinifera]
Length = 1394
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 HLKSGQVLIVQVDSVVIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1148
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 GLPKVEQVLEVRSIDSI 1165
>gi|149390432|ref|YP_001294260.1| RNA polymerase beta' subunit [Illicium oligandrum]
gi|212288322|sp|A6MMT4.1|RPOC2_ILLOL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|147917385|gb|ABQ52509.1| RNA polymerase beta' subunit [Illicium oligandrum]
Length = 1385
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS Q+LIV ATPGA HYG L++GN LVTFIYEK RS D+T+
Sbjct: 1083 IKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGNTLVTFIYEKSRSGDITQG 1142
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 LPKVEQVLEVRSIDSI 1158
>gi|90403637|gb|ABD93712.1| RNA polymerase beta chain [Vitis sp. Qiu 94046]
Length = 844
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 616 HLKSGQVLIVQVDSVVIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 675
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 676 GLPKVEQVLEVRSIDSI 692
>gi|114107036|ref|YP_740192.1| RNA polymerase beta' subunit [Liriodendron tulipifera]
gi|122239950|sp|Q0G9M9.1|RPOC2_LIRTU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|113200984|gb|ABI32499.1| RNA polymerase beta' subunit [Liriodendron tulipifera]
Length = 1382
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1079 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155
>gi|90403907|gb|ABD93847.1| RNA polymerase beta chain [Didymeles perrieri]
Length = 818
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ ++LKS Q+LIV ATPGA HYG +++G++LVTFIYEK RS D
Sbjct: 587 NKSNLKSGQVLIVHIDSLVIRSAKPYLATPGATVHGHYGEIIYEGDRLVTFIYEKSRSGD 646
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+RS D I
Sbjct: 647 ITQGLPKVEQVLEVRSIDSI 666
>gi|90403663|gb|ABD93725.1| RNA polymerase beta chain [Xanthorhiza simplicissima]
Length = 861
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 633 NLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 692
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 693 GLPKVEQVLEVRSIDSI 709
>gi|408900015|gb|AFU94803.1| RpoC2, partial (chloroplast) [Ouratea sp. CCD-2012]
Length = 1613
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHVDSVVLRSAKLYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|157690128|gb|ABV65751.1| RNA polymerase beta'' subunit, partial (chloroplast) [Leea
guineensis]
Length = 1260
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1036 HLKSGQVLIVQVDSVVIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1095
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1096 GLPKVEQVLEVRSIDSI 1112
>gi|323690371|gb|ADX99118.1| RNA polymerase beta II subunit [Pitraea cuneato-ovata]
Length = 694
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 432 HLKSGQVILVQVDSVVIRAAKPYLATPGATVHGHYGEILYQGDTLITFIYEKARSGDITQ 491
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 492 GLPKVERVFEVRSIDSI 508
>gi|90403851|gb|ABD93819.1| RNA polymerase beta chain [Philodendron hederaceum var. oxycardium]
Length = 763
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+LIV ATPGA HYG LH+G+ LVTFIYEK RS D+T+ L
Sbjct: 572 KSGQVLIVHVDYLVIRSAKPYLATPGATVHGHYGEILHEGDTLVTFIYEKSRSGDITQGL 631
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 632 PKVEQVLEVRSIDSI 646
>gi|408900019|gb|AFU94805.1| RpoC2, partial (chloroplast) [Pera bumeliifolia]
Length = 1630
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|295137019|ref|YP_003587566.1| RNA polymerase beta'' subunit [Pisum sativum]
gi|293338591|gb|ADE43564.1| RNA polymerase beta'' subunit (chloroplast) [Pisum sativum]
Length = 1367
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+
Sbjct: 1076 HLKLKSGQVIIVQMDSVIIRSANPYLATPGATIHGHYGEILSQGDILVTFIYEKSRSGDI 1135
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+Q+LEIRS D I
Sbjct: 1136 TQGLPKVEQILEIRSIDSI 1154
>gi|157690074|gb|ABV65724.1| RNA polymerase beta'' subunit, partial (chloroplast) [Coriaria
nepalensis]
Length = 1283
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS QILIV+ AT GA RHYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1062 HQKSGQILIVRVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQ 1121
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1122 GLPKVEQVLEVRSIDSI 1138
>gi|91214143|ref|YP_538765.1| RNA polymerase beta'' subunit [Glycine max]
gi|88984789|sp|Q8HVY3.2|RPOC2_SOYBN RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|83595744|gb|ABC25125.1| RNA polymerase beta' subunit [Glycine max]
Length = 1386
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS QIL VQ ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQILTVQMDSVGIRSANPYLATPGATVHGHYGEILSEGDILVTFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|408900009|gb|AFU94800.1| RpoC2, partial (chloroplast) [Mammea americana]
Length = 1630
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVVIVHLDSVVIRSAKSYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|408900001|gb|AFU94796.1| RpoC2, partial (chloroplast) [Irvingia malayana]
Length = 1630
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHVDSIVIRSAKSYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|90403903|gb|ABD93845.1| RNA polymerase beta chain [Nothofagus moorei]
Length = 777
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA H+G L++G+ LVTFIYEK RS D+T+
Sbjct: 569 HLKSGQVLIVQIGSVVLRSAKPYLATPGATVHGHFGEILYEGDTLVTFIYEKSRSGDITQ 628
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+ S D I
Sbjct: 629 GLPKVEQVLEVHSIDSI 645
>gi|15778189|gb|AAL07336.1| rpoC2 [Glycine max]
Length = 1384
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS QIL VQ ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1090 HLKSGQILTVQMDSVGIRSANPYLATPGATVHGHYGEILSEGDILVTFIYEKSRSGDITQ 1149
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 GLPKVEQVLEVRSIDSI 1166
>gi|133447|sp|P12227.1|RPOC2_PEA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|829325|emb|CAA27545.1| unnamed protein product [Pisum sativum]
Length = 1163
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IVQ ATPGA HYG L +G+ LVTFIYEK RS D+
Sbjct: 872 HLKLKSGQVIIVQMDSVIIRSANPYLATPGATIHGHYGEILSQGDILVTFIYEKSRSGDI 931
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+Q+LEIRS D I
Sbjct: 932 TQGLPKVEQILEIRSIDSI 950
>gi|290489540|gb|ADD31154.1| RNA polymerase beta'' subunit protein [Lonicera japonica]
Length = 1390
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ A PGA HYG L+ G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQVLIVQVDSVVIRSAKPYLAIPGATVHGHYGRILYAGDTLVTFIYEKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E+RS D I
Sbjct: 1147 GLPKVEQVFEVRSIDSI 1163
>gi|146261533|gb|ABQ15076.1| RNA polymerase beta' subunit [Pterostemon rotundifolius]
Length = 811
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q+LI+Q ATPGA HYG L++G LVTFIYEK RS D+T+
Sbjct: 628 YLKSGQVLIIQVDSVVIRSAKTYLATPGATVHGHYGEILYEGYTLVTFIYEKSRSGDITQ 687
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 688 GLPKVEQVLEVRSIDSI 704
>gi|146261509|gb|ABQ15064.1| RNA polymerase beta' subunit [Daphniphyllum sp. 205-82]
Length = 793
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV+ ATPG HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 622 HLKSGQVLIVRVDSVVIRSAKPYLATPGTNVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 681
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 682 GLPKVEQVLEVRSIDSI 698
>gi|336239399|gb|AEI27557.1| RNA polymerase beta subunit [Debregeasia saeneb]
Length = 1250
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ TPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1039 HLKSGQVIIVQIDSVVIRSAKSYLTTPGATVHGHYGEILFEGDTLVTFIYEKSRSGDITQ 1098
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1099 GLPKVEQVLEVRSIDSI 1115
>gi|90403711|gb|ABD93749.1| RNA polymerase beta chain [Polygonum sp. Qiu 94110]
Length = 821
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK+ Q+LIVQ ATPGA HYG +++G+ +VTFIYEK RS D+T+
Sbjct: 600 HLKAGQVLIVQVDSVVIRAAKPYLATPGATVHGHYGEIIYEGDTVVTFIYEKSRSGDITQ 659
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 660 GLPKVEQVLEVRSLESI 676
>gi|408899965|gb|AFU94778.1| RpoC2, partial (chloroplast) [Bhesa sp. CCD-2012]
Length = 1630
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHVDSVVIRSAKPYLATPGATVHGHYGKILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSVDSI 1371
>gi|157690124|gb|ABV65749.1| RNA polymerase beta'' subunit, partial (chloroplast) [Juglans nigra]
Length = 1268
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1055 HLKSGQVLIVQIDSVVIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1114
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1115 GLPKVEQVLEVRSIDSI 1131
>gi|90403639|gb|ABD93713.1| RNA polymerase beta chain [Leea guineensis]
Length = 829
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 610 HLKSGQVLIVQVDSVVIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 669
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 670 GLPKVEQVLEVRSIDSI 686
>gi|90403749|gb|ABD93768.1| RNA polymerase beta chain [Dillenia indica]
Length = 854
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ +HLKS Q+LIVQ AT GA HYG ++G+ L+TFIYEK RS D
Sbjct: 623 NRSHLKSGQVLIVQVDSLVIRSAKPYLATSGATVHGHYGEIFYEGDTLITFIYEKSRSGD 682
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+RS D I
Sbjct: 683 ITQGLPKVEQVLEVRSIDSI 702
>gi|336239429|gb|AEI27572.1| RNA polymerase beta subunit [Boehmeria macrophylla var. scabrella]
Length = 1251
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ TPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1039 HLKSGQVIIVQIDSVVIRSAKSYLTTPGATVHGHYGEILFEGDTLVTFIYEKSRSGDITQ 1098
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1099 GLPKVEQVLEVRSIDSI 1115
>gi|323690367|gb|ADX99116.1| RNA polymerase beta II subunit [Rhaphithamnus venustus]
Length = 697
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 439 HPKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 498
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 499 GLPKVEQVLEVRSVDSI 515
>gi|157690182|gb|ABV65778.1| RNA polymerase beta'' subunit, partial (chloroplast) [Strasburgeria
robusta]
Length = 1281
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+
Sbjct: 1058 HLKLKSGQVLIVQIDFVVIRSAKPYLATPGATVHGHYREILYEGDTLVTFIYEKSRSGDI 1117
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1118 TQGLPKVEQVLEVRSIDSI 1136
>gi|90403935|gb|ABD93861.1| RNA polymerase beta chain [Siparuna brasiliensis]
Length = 757
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LI ATPGA HYG L+KG+ LVTFIYEK RS D+T+
Sbjct: 583 HIKSGQVLIAYVDSLVIRSAKLEFATPGATVHGHYGKILYKGDTLVTFIYEKSRSGDITQ 642
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 643 GLPKVEQVLEARSIDSI 659
>gi|290489534|gb|ADD31151.1| RNA polymerase beta'' subunit protein [Dillenia indica]
Length = 1370
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ +HLKS Q+LIVQ AT GA HYG ++G+ L+TFIYEK RS D
Sbjct: 1081 NRSHLKSGQVLIVQVDSLVIRSAKPYLATSGATVHGHYGEIFYEGDTLITFIYEKSRSGD 1140
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+RS D I
Sbjct: 1141 ITQGLPKVEQVLEVRSIDSI 1160
>gi|90403795|gb|ABD93791.1| RNA polymerase beta chain [Houttuynia cordata]
Length = 829
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+L V ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 601 HIKSGQVLTVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 660
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 661 GLPKVEQVLEVRSIDSI 677
>gi|149390258|ref|YP_001294088.1| RNA polymerase beta' subunit [Chloranthus spicatus]
gi|212277052|sp|A6MMB2.1|RPOC2_CHLSC RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|146744178|gb|ABQ43250.1| RNA polymerase beta' subunit [Chloranthus spicatus]
Length = 1389
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H++S Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HIESGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1143
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160
>gi|323690369|gb|ADX99117.1| RNA polymerase beta II subunit [Priva cordifolia]
Length = 684
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 422 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYQGDTLITFIYEKSRSGDITQ 481
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 482 GLPKVERVFEVRSIDSI 498
>gi|90403845|gb|ABD93816.1| RNA polymerase beta chain [Euphorbia milii var. splendens]
Length = 814
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV ATPGA HYG L++G LVTFIYEK RS D+T+
Sbjct: 621 HLKSGQVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILYEGATLVTFIYEKSRSGDITQ 680
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 681 GLPKVEQVLEVRSIDSI 697
>gi|139388900|ref|YP_001123627.1| RNA polymerase beta'' subunit [Lepidium virginicum]
gi|212288325|sp|A4QL96.1|RPOC2_LEPVR RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|134286830|dbj|BAF50451.1| RNA polymerase beta subunit-2 [Lepidium virginicum]
Length = 1373
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|157690140|gb|ABV65757.1| RNA polymerase beta'' subunit, partial (chloroplast) [Morella
cerifera]
Length = 1274
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ AT GA HYG L+KG+ LVTFIYEK RS D+T+
Sbjct: 1056 HLKSGQVLIVQINSVVIRSAKPYLATLGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQ 1115
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1116 GLPKVEQVLEVRSINSI 1132
>gi|157690094|gb|ABV65734.1| RNA polymerase beta'' subunit (chloroplast) [Euonymus americanus]
Length = 1395
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ TPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1092 HLKSGQVIIVQVDSVVIRSAKPYLTTPGATLHGHYGEILSEGDTLVTFIYEKSRSGDITQ 1151
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1152 GLPKVEQVLEVRSIDSI 1168
>gi|157690048|gb|ABV65711.1| RNA polymerase beta'' subunit, partial (chloroplast) [Brexia
madagascariensis]
Length = 1268
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ TPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1057 HLKSGQVIIVQVDSVVIRSAKPYLTTPGATLHGHYGEILSEGDTLVTFIYEKSRSGDITQ 1116
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1117 GLPKVEQVLEVRSIDSI 1133
>gi|404474601|ref|YP_006666283.1| RNA polymerase beta'' subunit (chloroplast) [Pachycladon enysii]
gi|401786716|gb|AFQ07782.1| RNA polymerase beta'' subunit (chloroplast) [Pachycladon enysii]
Length = 1379
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSVVIRAAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|157690036|gb|ABV65705.1| RNA polymerase beta'' subunit, partial (chloroplast) [Anisoptera
marginata]
Length = 1259
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q+LIVQ ATPGA HYG +++G+ LVTF+YEK RS D+T+
Sbjct: 1049 YLKSGQVLIVQVDSVVIRSAKTFLATPGATVHGHYGEIVYEGDTLVTFLYEKSRSGDITQ 1108
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1109 GLPKVEQVLEVRSIDSI 1125
>gi|139387242|ref|YP_001123363.1| RNA polymerase beta'' subunit [Capsella bursa-pastoris]
gi|212277025|sp|A4QKI2.1|RPOC2_CAPBU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|134286563|dbj|BAF50187.1| RNA polymerase beta subunit-2 [Capsella bursa-pastoris]
Length = 1379
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|374413245|gb|AEZ49493.1| RNA polymerase beta'' subunit, partial [Potarophytum riparium]
Length = 1381
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++GN LVTFIYEK RS D+T+ L
Sbjct: 1080 KSGQILIVNLDSLVIRSAKPYLATPGATVHGHYGKILYEGNTLVTFIYEKSRSGDITQGL 1139
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1140 PKVEQILEVRSLDSI 1154
>gi|374249776|ref|YP_005089405.1| rpoC2 gene product (chloroplast) [Silene noctiflora]
gi|329755593|gb|AEC04155.1| RNA polymerase beta' subunit (chloroplast) [Silene noctiflora]
Length = 1354
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK QI+IVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1056 HLKPGQIIIVQFDSVVIRSAKPSLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSSDITQ 1115
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1116 GLPKVEQVLEVRSVESI 1132
>gi|139389940|ref|YP_001123540.1| RNA polymerase beta subunit-2 [Draba nemorosa]
gi|212288318|sp|A4QL09.1|RPOC2_DRANE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|134286742|dbj|BAF50364.1| RNA polymerase beta subunit-2 [Draba nemorosa]
Length = 1381
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQKDSIVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|428697605|ref|YP_007025935.1| RNA polymerase beta' subunit [Vaccinium macrocarpon]
gi|374093743|gb|AEY84179.1| RNA polymerase beta subunit (chloroplast) [Vaccinium macrocarpon]
gi|385198171|gb|AFI44089.1| RNA polymerase beta' subunit [Vaccinium macrocarpon]
Length = 1359
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G+ L+TF+YEK RS D+T+
Sbjct: 1078 HLKSGQVLIVQGDSVVIRSAKPYLATPGATVNGHYGEILYEGDTLLTFLYEKSRSSDITQ 1137
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+Q+ E+RS D I
Sbjct: 1138 GLPKVEQMFEVRSIDSI 1154
>gi|139389408|ref|YP_001123105.1| RNA polymerase beta'' subunit [Olimarabidopsis pumila]
gi|212288337|sp|A4QJS3.1|RPOC2_OLIPU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|134286302|dbj|BAF49929.1| RNA polymerase beta subunit-2 [Olimarabidopsis pumila]
Length = 1379
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|297837967|ref|XP_002886865.1| RNA polymerase beta subunit-2 [Arabidopsis lyrata subsp. lyrata]
gi|297332706|gb|EFH63124.1| RNA polymerase beta subunit-2 [Arabidopsis lyrata subsp. lyrata]
Length = 1379
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|157690088|gb|ABV65731.1| RNA polymerase beta'' subunit, partial (chloroplast) [Elaeocarpus
angustifolius]
Length = 1263
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 1052 HLKSGQVIIVQVDSVVIRSAKPYLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 1111
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1112 GLPKVEQVLEVRSIDSI 1128
>gi|377819368|ref|YP_005097864.1| RNA polymerase beta'' subunit (chloroplast) [Colocasia esculenta]
gi|340536629|gb|AEK48396.1| RNA polymerase beta'' subunit (chloroplast) [Colocasia esculenta]
Length = 1381
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+LIV ATPGA HYG LH+G+ LVTFIYEK RS D+T+ L
Sbjct: 1080 KSGQVLIVHVDYLVIRSAKPYLATPGATVHGHYGEILHEGDTLVTFIYEKSRSGDITQGL 1139
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 1140 PKVEQVLEVRSIDSI 1154
>gi|139389086|ref|YP_001123804.1| RNA polymerase beta'' subunit [Nasturtium officinale]
gi|212288330|sp|A4QLS3.1|RPOC2_NASOF RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|134287009|dbj|BAF50628.1| RNA polymerase beta subunit-2 [Nasturtium officinale]
Length = 1379
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|340536716|gb|AEK48482.1| RNA polymerase beta'' subunit (chloroplast) [Colocasia esculenta]
Length = 1381
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+LIV ATPGA HYG LH+G+ LVTFIYEK RS D+T+ L
Sbjct: 1080 KSGQVLIVHVDYLVIRSAKPYLATPGATVHGHYGEILHEGDTLVTFIYEKSRSGDITQGL 1139
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 1140 PKVEQVLEVRSIDSI 1154
>gi|219673978|ref|YP_002456463.1| RNA polymerase beta' subunit [Trifolium subterraneum]
gi|193788947|gb|ACF20543.1| RNA polymerase beta' subunit [Trifolium subterraneum]
Length = 1349
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q+L VQ ATPGA HYG L++G+ LVTF+YEK RS D+
Sbjct: 1065 HLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILYQGDILVTFLYEKSRSGDI 1124
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+Q+LEIRS D I
Sbjct: 1125 TQGLPKVEQILEIRSIDSI 1143
>gi|139389632|ref|YP_001123189.1| RNA polymerase beta subunit-2 [Arabis hirsuta]
gi|212276953|sp|A4QK08.1|RPOC2_ARAHI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|134286387|dbj|BAF50013.1| RNA polymerase beta subunit-2 [Arabis hirsuta]
Length = 1371
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSIVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|90403751|gb|ABD93769.1| RNA polymerase beta chain [Triglochin maritima]
Length = 822
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q+LIV ATPG RHYG L++G+ LVTFIYEK RS D+T+
Sbjct: 594 QIKSGQVLIVHVDSLVIRLAKPYLATPGTTVHRHYGEILYEGDTLVTFIYEKSRSGDITQ 653
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 654 GLPKVEQVLEVRSIDSI 670
>gi|146261507|gb|ABQ15063.1| RNA polymerase beta' subunit [Crassula aff. perforata Fishbein
3778]
Length = 844
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 46/77 (59%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK Q+LIVQ ATPGA HYG L G+ VTFIYEK RS D+T+
Sbjct: 632 HLKLGQVLIVQVDSIIIRSAKPYLATPGATVHGHYGEILSTGDTFVTFIYEKSRSGDITQ 691
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 692 GLPKVEQVLEVRSIDSI 708
>gi|336239407|gb|AEI27561.1| RNA polymerase beta subunit [Ficus tikoua]
Length = 1254
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG +G+ LVTFIYEK RS D+T+
Sbjct: 1043 HLKSGQVIIVQIDSVVIRSAKSYLATPGATVHGHYGEIRSEGDTLVTFIYEKSRSGDITQ 1102
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1103 GLPKVEQVLEVRSIDSI 1119
>gi|326457029|gb|ADZ74293.1| RNA polymerase beta subunit [Gossypium anomalum]
Length = 1393
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|394830789|ref|YP_006503433.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium
capitis-viridis]
gi|335354489|gb|AEH43107.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium
capitis-viridis]
Length = 1393
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|90403943|gb|ABD93865.1| RNA polymerase beta chain [Piper betle]
Length = 765
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
+H+KS QI+ V ATPGA HYG +++G+ LVTFIYEK RS D+T
Sbjct: 589 SHIKSGQIVTVHGDSLVIRSAKPHLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDIT 648
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 649 QGLPKVEQVLEVRSIDSI 666
>gi|408899967|gb|AFU94779.1| RpoC2, partial (chloroplast) [Byrsonima crassifolia]
Length = 1629
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IV ATPGA HYG L++G++LVTFIYEK RS D+T+
Sbjct: 1295 LKSGQVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILYEGDRLVTFIYEKSRSGDITQG 1354
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1355 LPKVEQVLEVRSIDSI 1370
>gi|326457292|gb|ADZ74553.1| RNA polymerase beta subunit [Gossypium longicalyx]
Length = 1393
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|394830965|ref|YP_006503599.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium robinsonii]
gi|335354657|gb|AEH43273.1| RNA polymerase beta'' subunit [Gossypium robinsonii]
Length = 1395
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1091 LKSGQVFIVQADSIVIRSAKTYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1150
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1151 LPKVEQVLEVRSIDSI 1166
>gi|335352794|gb|AEH42619.1| RNA polymerase beta subunit [Erythroxylum areolatum]
Length = 1136
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 911 HLKSGQVIIVHVDSLVIRSAKPYLATPGATVHGHYGEIVYEGDTLVTFIYEKSRSGDITQ 970
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 971 GLPKVEQVLEVRSVDSI 987
>gi|90403797|gb|ABD93792.1| RNA polymerase beta chain [Saururus cernuus]
Length = 827
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+L V ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 599 HVKSGQVLTVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 658
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 659 GLPKVEQVLEVRSIDSI 675
>gi|326457466|gb|ADZ74725.1| RNA polymerase beta subunit [Gossypium sturtianum]
Length = 1393
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKTYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|326457205|gb|ADZ74467.1| RNA polymerase beta subunit [Gossypium herbaceum]
Length = 1393
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|326457117|gb|ADZ74380.1| RNA polymerase beta subunit [Gossypium bickii]
Length = 1393
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKTYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|394830703|ref|YP_006503350.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium somalense]
gi|394830878|ref|YP_006503516.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium areysianum]
gi|335354405|gb|AEH43024.1| RNA polymerase beta'' subunit [Gossypium somalense]
gi|335354573|gb|AEH43190.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium areysianum]
Length = 1393
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|394830616|ref|YP_006503267.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium incanum]
gi|335354321|gb|AEH42941.1| RNA polymerase beta'' subunit [Gossypium incanum]
Length = 1391
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1146
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 LPKVEQVLEVRSIDSI 1162
>gi|372290922|ref|YP_005087683.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium raimondii]
gi|318084640|gb|ADV39112.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium raimondii]
Length = 1393
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|323690361|gb|ADX99113.1| RNA polymerase beta II subunit [Neosparton ephedroides]
Length = 667
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA YG L++G+ L+TFIYEK RS D+T+
Sbjct: 439 HLKSGQVILVQVDSVVIRSAKPYLATPGATVHGDYGEILYQGDTLITFIYEKSRSGDITQ 498
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 499 GLPKVEQVLEVRSIDSI 515
>gi|408899995|gb|AFU94793.1| RpoC2, partial (chloroplast) [Humiria balsamifera]
Length = 1630
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG L++G+ LVTFIYE+ RS D+
Sbjct: 1293 HXXLKSGQVIIVHLDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYERSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|374249537|ref|YP_005088807.1| RNA polymerase beta'' subunit (chloroplast) [Millettia pinnata]
gi|356474826|gb|AET11344.1| RNA polymerase beta'' subunit (chloroplast) [Millettia pinnata]
Length = 1384
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 49/80 (61%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ H KS QI+ VQ ATPGA HYG L++G+ LVTFIYEK RS D
Sbjct: 1082 NEPHFKSGQIITVQMDSVGIRSANPYLATPGATVHGHYGEILYEGDILVTFIYEKSRSGD 1141
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+RS D I
Sbjct: 1142 ITQGLPKVEQVLEVRSIDSI 1161
>gi|161784182|ref|YP_001595498.1| RNA polymerase beta' subunit-2 [Lemna minor]
gi|212288324|sp|A9L986.1|RPOC2_LEMMI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|88696760|gb|ABD48485.1| RNA polymerase beta' subunit-2 [Lemna minor]
Length = 1366
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q++IV ATPGA HYG LH+G+ LVTFIYEK RS D+T+ L
Sbjct: 1078 KSGQVIIVHVDYLVIRSAKPYLATPGATVHGHYGETLHEGDTLVTFIYEKSRSGDITQGL 1137
Query: 53 SKVKQVLEIRSFDLILACL 71
KV+QVLE+RS D I L
Sbjct: 1138 PKVEQVLEVRSIDSISTNL 1156
>gi|68053262|sp|Q589B8.1|RPOC2_SILLA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|62149317|dbj|BAD93459.1| RNA polymerase beta chain [Silene latifolia]
Length = 1373
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK QI+IVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1075 HLKPGQIIIVQFDSVVIRSAKPCLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1134
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1135 GLPKVEQVLEVRSVESI 1151
>gi|404474401|ref|YP_006665770.1| RNA polymerase beta' subunit (chloroplast) [Elodea canadensis]
gi|374094586|gb|AEY84642.1| RNA polymerase beta' subunit (chloroplast) [Elodea canadensis]
Length = 1387
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV A TPG HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HIKSGQVLIVNADYLVIRSAKPYLVTPGTTVHGHYGEILYEGDTLVTFIYEKSRSRDITQ 1143
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160
>gi|386800827|ref|YP_006303481.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium gossypioides]
gi|329317061|gb|AEB90420.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium gossypioides]
Length = 1394
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1090 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1149
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165
>gi|374249940|ref|YP_005089567.1| rpoC2 gene product (chloroplast) [Silene latifolia]
gi|329755511|gb|AEC04074.1| RNA polymerase beta' subunit (chloroplast) [Silene latifolia]
Length = 1373
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK QI+IVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1075 HLKPGQIIIVQFDSVVIRSAKPCLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1134
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1135 GLPKVEQVLEVRSVESI 1151
>gi|442742953|ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
gi|438687594|emb|CCP47120.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
gi|438688278|emb|CCP47209.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
gi|438688402|emb|CCP47298.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
Length = 1395
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 13/73 (17%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1090 HLKSGQVILVQVDSVVMRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQ 1149
Query: 51 ALSKVKQVLEIRS 63
L KV+QVLE+RS
Sbjct: 1150 GLPKVEQVLEVRS 1162
>gi|90403675|gb|ABD93731.1| RNA polymerase beta chain [Xanthosoma mafaffa]
Length = 843
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+LIV ATPGA HYG LH+G+ LVTFIYEK RS D+T+ L
Sbjct: 617 KSGQVLIVHVDYLVIRSAKPYLATPGATVHGHYGEILHEGDTLVTFIYEKSRSGDITQGL 676
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+R+ D I
Sbjct: 677 PKVEQVLEVRTIDSI 691
>gi|90403747|gb|ABD93767.1| RNA polymerase beta chain [Berberis bealei]
Length = 833
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+L V ATPGA HYGA +G+ LVTFIYEK RS D+T+
Sbjct: 605 HLKSGQVLSVHVDSFVIRSAKPYLATPGATIHGHYGAIFSEGDTLVTFIYEKSRSGDITQ 664
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 665 GLPKVEQVLEVRSIDSI 681
>gi|374249858|ref|YP_005089486.1| rpoC2 gene product (chloroplast) [Silene conica]
gi|329755429|gb|AEC03993.1| RNA polymerase beta' subunit (chloroplast) [Silene conica]
Length = 1366
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK QI+IVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HLKPGQIIIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1139 GLPKVEQVLEVRSVESI 1155
>gi|157690096|gb|ABV65735.1| RNA polymerase beta'' subunit (chloroplast) [Ficus sp. Moore 315]
Length = 1391
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HYG +G+ LVTFIYEK RS D+T+
Sbjct: 1088 HLKSGQVIIVQIDSVVLRSAKSYLATPGATVHGHYGEIRSEGDTLVTFIYEKSRSGDITQ 1147
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1148 GLPKVEQVLEVRSIDSI 1164
>gi|255588273|ref|XP_002534555.1| DNA-directed RNA polymerase beta chain, putative [Ricinus
communis]
gi|223525048|gb|EEF27828.1| DNA-directed RNA polymerase beta chain, putative [Ricinus
communis]
Length = 384
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++I+ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 7 HLKSGQVIIIHIGSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 66
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+ S D I
Sbjct: 67 GLPKVEQVLEVHSIDSI 83
>gi|90403679|gb|ABD93733.1| RNA polymerase beta chain [Alisma plantago-aquatica]
Length = 792
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H++S Q+LIV ATPG HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 599 HIRSGQVLIVHVDSLVIRSAKPYLATPGTTVHGHYGGILYEGDTLVTFIYEKSRSGDITQ 658
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 659 GLPKVEQVLEVRSIDSI 675
>gi|90403921|gb|ABD93854.1| RNA polymerase beta chain [Cinnamodendron ekmanii]
Length = 745
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 574 QIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 633
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 634 GLPKVEQVLEVRSIDSI 650
>gi|90403911|gb|ABD93849.1| RNA polymerase beta chain [Chloranthus multistachys]
Length = 827
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H++S Q+LIV ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 606 HIESGQVLIVHVDFLVIRSAKPHLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 665
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 666 GLPKVEQVLEVRSIDSI 682
>gi|90403871|gb|ABD93829.1| RNA polymerase beta chain [Pleea tenuifolia]
Length = 821
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 593 QIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 652
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 653 GLPKVEQVLEVRSIDSI 669
>gi|342316111|ref|YP_004769620.1| RNA polymerase beta' subunit (chloroplast) [Spirodela polyrhiza]
gi|341834061|gb|AEK94332.1| RNA polymerase beta' subunit [Spirodela polyrhiza]
Length = 1366
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+LIV ATPGA HYG LH+G+ LVTFIYEK RS D+T+ L
Sbjct: 1078 KSGQVLIVHVDYLVIRSAKPYLATPGATVHGHYGETLHEGDTLVTFIYEKSRSGDITQGL 1137
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 1138 PKVEQVLEVRSIDSI 1152
>gi|157690152|gb|ABV65763.1| RNA polymerase beta'' subunit, partial (chloroplast) [Parnassia
palustris]
Length = 1267
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ TPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1058 HLKSGQVIIVQVDSLVIRSANPYLTTPGATLHGHYGKILCEGDTLVTFIYEKSRSGDITQ 1117
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1118 GLPKVEQVLEVRSIDSI 1134
>gi|157690192|gb|ABV65783.1| RNA polymerase beta'' subunit, partial (chloroplast) [Terminalia
catappa]
Length = 1274
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS Q+LIVQ A PGAI HYG L++G+ LVTFIYEK S D+T+
Sbjct: 1053 HPKSGQVLIVQVDSVVIRSAKPYLAAPGAIVHGHYGELLYEGDTLVTFIYEKSGSGDITQ 1112
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1113 GLPKVEQVLEVRSIDSI 1129
>gi|342316280|ref|YP_004769802.1| RNA polymerase beta' subunit (chloroplast) [Wolffiella lingulata]
gi|341834145|gb|AEK94415.1| RNA polymerase beta' subunit [Wolffiella lingulata]
Length = 1367
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+LIV ATPGA HYG LH+G+ LVTFIYEK RS D+T+ L
Sbjct: 1079 KSGQVLIVDVDYLVLRSAKPYLATPGATVHGHYGETLHQGDTLVTFIYEKSRSGDITQGL 1138
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 1139 PKVEQVLEVRSIDSI 1153
>gi|336239423|gb|AEI27569.1| RNA polymerase beta subunit [Sanguisorba sitchensis]
Length = 1244
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1034 LKSGQVIVVQLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 1093
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1094 LPKVEQVLEVRSIDSI 1109
>gi|110227069|ref|YP_665548.1| RNA polymerase beta'' subunit [Populus alba]
gi|122224632|sp|Q14FG7.1|RPOC2_POPAL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|109945507|dbj|BAE97195.1| RNA polymerase beta II subunit [Populus alba]
Length = 1390
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIV A TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1088 LKSGQVLIVHADSVILRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1147
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1148 LPKVEQVLEVRSIDSI 1163
>gi|197294114|ref|YP_002149735.1| RNA polymerase beta' subunit [Cicer arietinum]
gi|197089802|gb|ACH41072.1| RNA polymerase beta' subunit [Cicer arietinum]
Length = 1376
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q+L VQ ATPGA HYG L +G+ LVTFIYEK RS D+
Sbjct: 1083 HLKLKSGQVLTVQMDSVIIRSANPYLATPGATIHGHYGEILDEGDILVTFIYEKSRSGDI 1142
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+Q+LEIRS D I
Sbjct: 1143 TQGLPKVEQILEIRSIDSI 1161
>gi|134093187|ref|YP_001109489.1| RNA polymerase beta'' subunit [Populus trichocarpa]
gi|212288340|sp|A4GYP8.1|RPOC2_POPTR RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|133712049|gb|ABO36692.1| RNA polymerase beta'' chain [Populus trichocarpa]
Length = 1390
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIV A TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1088 LKSGQVLIVHADSVILRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1147
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1148 LPKVEQVLEVRSIDSI 1163
>gi|157690122|gb|ABV65748.1| RNA polymerase beta'' subunit, partial (chloroplast) [Ixonanthes
icosandra x Ixonanthes cuneata]
Length = 1262
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV+ ATPG HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1054 HLKSGQVIIVRVDSVVLRSAKLYLATPGTTVHGHYGEILSEGDTLVTFIYEKSRSGDITQ 1113
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1114 GLPKVEQVLEVRSIDSI 1130
>gi|408899983|gb|AFU94787.1| RpoC2, partial (chloroplast) [Erythroxylum areolatum]
Length = 1627
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG +++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHVDSLVIRSAKPYLATPGATVHGHYGEIVYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSVDSI 1371
>gi|90403825|gb|ABD93806.1| RNA polymerase beta chain [Canella winterana]
Length = 762
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 599 QIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 658
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 659 GLPKVEQVLEVRSIDSI 675
>gi|119368489|ref|YP_913177.1| RNA polymerase beta'' subunit [Gossypium barbadense]
gi|125987657|sp|A0ZZ25.1|RPOC2_GOSBA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|119224851|dbj|BAF41237.1| RNA polymerase beta'' subunit [Gossypium barbadense]
Length = 1391
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1146
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 LPKVEQVLEVRSIDSI 1162
>gi|91208978|ref|YP_538838.1| RNA polymerase beta'' subunit [Solanum bulbocastanum]
gi|122201835|sp|Q2MIJ7.1|RPOC2_SOLBU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|84371885|gb|ABC56203.1| RNA polymerase beta' subunit [Solanum bulbocastanum]
Length = 1392
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165
>gi|89280625|ref|YP_514842.1| RNA polymerase beta'' subunit [Solanum lycopersicum]
gi|122201793|sp|Q2MIB0.1|RPOC2_SOLLC RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|84371973|gb|ABC56290.1| RNA polymerase beta' subunit [Solanum lycopersicum]
gi|89241661|emb|CAJ32383.1| RNA polymerase beta'' chain [Solanum lycopersicum]
Length = 1392
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165
>gi|351653865|ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana undulata]
gi|347453891|gb|AEO95549.1| RNA polymerase beta'' subunit (chloroplast) [Nicotiana undulata]
gi|347454002|gb|AEO95659.1| RNA polymerase beta'' subunit [synthetic construct]
Length = 1392
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165
>gi|126165890|ref|NP_783222.2| RNA polymerase beta'' subunit [Atropa belladonna]
Length = 1385
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1142
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 LPKVEQVLEVRSIDSI 1158
>gi|139388084|ref|YP_001123276.1| RNA polymerase beta subunit-2 [Barbarea verna]
gi|212277006|sp|A4QK95.1|RPOC2_BARVE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|134286475|dbj|BAF50100.1| RNA polymerase beta subunit-2 [Barbarea verna]
Length = 1379
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ HLKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D
Sbjct: 1080 NEPHLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGD 1139
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+R+ D I
Sbjct: 1140 ITQGLPKVEQVLEVRAIDSI 1159
>gi|108773120|ref|YP_635629.1| RNA polymerase beta'' subunit [Solanum tuberosum]
gi|88656794|gb|ABD47047.1| RNA polymerase beta' subunit [Solanum tuberosum]
Length = 1392
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165
>gi|90111010|sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|80750911|dbj|BAE47987.1| RNA polymerase beta'' subunit [Nicotiana tomentosiformis]
Length = 1392
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165
>gi|41018087|sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|20068321|emb|CAC88034.1| RNA polymerase beta II subunit [Atropa belladonna]
Length = 1389
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1146
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 LPKVEQVLEVRSIDSI 1162
>gi|225275|prf||1211235K rpoC-like ORF 862
Length = 862
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 560 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 619
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 620 LPKVEQVLEVRSVDSI 635
>gi|372291021|ref|YP_005087779.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium darwinii]
gi|318084389|gb|ADV38864.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium darwinii]
gi|329317313|gb|AEB90669.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium barbadense]
gi|329317397|gb|AEB90752.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium barbadense]
gi|329317481|gb|AEB90835.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium barbadense]
Length = 1391
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1146
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 LPKVEQVLEVRSIDSI 1162
>gi|329124572|gb|AEB72129.1| RNA polymerase beta' subunit (chloroplast) [Solanum tuberosum]
gi|329124659|gb|AEB72215.1| RNA polymerase beta' subunit (chloroplast) [Solanum tuberosum]
Length = 1392
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165
>gi|126165917|ref|YP_398849.2| RNA polymerase beta'' subunit [Nicotiana tomentosiformis]
Length = 1388
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1145
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 LPKVEQVLEVRSIDSI 1161
>gi|90403727|gb|ABD93757.1| RNA polymerase beta chain [Nicotiana tabacum]
Length = 802
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 575 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 634
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 635 LPKVEQVLEVRSVDSI 650
>gi|115605012|ref|YP_784463.1| RNA polymerase beta' subunit [Piper cenocladum]
gi|122164372|sp|Q06GS0.1|RPOC2_PIPCE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|112253741|gb|ABI14462.1| RNA polymerase beta' subunit [Piper cenocladum]
Length = 1380
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
+H+KS QI+ V ATPGA HYG +++G+ LVTFIYEK RS D+T
Sbjct: 1086 SHIKSGQIVTVHGDSLVIRSAKLHLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDIT 1145
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 1146 QGLPKVEQVLEVRSIDSI 1163
>gi|336239413|gb|AEI27564.1| RNA polymerase beta subunit [Hippophae rhamnoides subsp. sinensis]
Length = 1260
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK+ Q++IVQ PGA HYG L KG+ L+TFIYEK RS D+T+
Sbjct: 1049 HLKAGQVIIVQMDSVVIRSAKPYLVAPGATVHGHYGEILSKGDTLITFIYEKSRSGDITQ 1108
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1109 GLPKVEQVLEVRSIDSI 1125
>gi|372291375|ref|YP_005088270.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium tomentosum]
gi|372291763|ref|YP_005088906.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium mustelinum]
gi|318084558|gb|ADV39031.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium mustelinum]
gi|318084726|gb|ADV39197.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium tomentosum]
Length = 1393
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|91208892|ref|YP_538925.1| RNA polymerase beta'' subunit [Gossypium hirsutum]
gi|122201383|sp|Q2L8Z5.1|RPOC2_GOSHI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|85687406|gb|ABC73618.1| RNA polymerase beta' subunit [Gossypium hirsutum]
gi|329317229|gb|AEB90586.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium hirsutum]
Length = 1393
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|329317145|gb|AEB90503.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium hirsutum]
Length = 1393
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|325210920|ref|YP_004285994.1| RNA polymerase beta subunit [Gossypium thurberi]
gi|372291473|ref|YP_005088366.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium herbaceum
subsp. africanum]
gi|372291847|ref|YP_005088989.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium arboreum]
gi|290775782|gb|ADD62278.1| RNA polymerase beta subunit [Gossypium thurberi]
gi|318084306|gb|ADV38782.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium arboreum]
gi|318084474|gb|ADV38948.1| RNA polymerase beta'' subunit (chloroplast) [Gossypium herbaceum
subsp. africanum]
Length = 1393
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164
>gi|404474515|ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) [Capsicum annuum]
gi|401065922|gb|AFP90766.1| RNA polymerase beta'' subunit (chloroplast) [Capsicum annuum]
Length = 1392
Score = 72.0 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165
>gi|350996416|gb|AEQ36928.1| RNA polymerase beta subunit-2 (chloroplast) [Datura stramonium]
Length = 1388
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1145
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 LPKVEQVLEVRSIDSI 1161
>gi|394831092|ref|YP_006503781.1| RNA polymerase beta subunit-2 (chloroplast) [Datura stramonium]
gi|350996503|gb|AEQ37014.1| RNA polymerase beta subunit-2 [Datura stramonium]
Length = 1388
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1145
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 LPKVEQVLEVRSIDSI 1161
>gi|408900003|gb|AFU94797.1| RpoC2, partial (chloroplast) [Ixonanthes sp. CCD-2012]
Length = 1629
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1296 LKSGQVIIVHVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1355
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1356 LPKVEQVLEVRSIDSI 1371
>gi|90403737|gb|ABD93762.1| RNA polymerase beta chain [Orontium aquaticum]
Length = 835
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 607 QIKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 666
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 667 GLPKVEQVLEVRSIDSI 683
>gi|90403697|gb|ABD93742.1| RNA polymerase beta chain [Tasmannia insipida]
Length = 825
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 597 QIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 656
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 657 GLPKVEQVLEVRSIDSI 673
>gi|90403865|gb|ABD93826.1| RNA polymerase beta chain [Kadsura japonica]
Length = 787
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS Q+LIV ATPGA HYG L++G LVTFIYEK RS D+T+
Sbjct: 586 IKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGETLVTFIYEKSRSGDITQG 645
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 646 LPKVEQVLEVRSIDSI 661
>gi|90403667|gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus]
Length = 865
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS Q+L+V ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 637 HQKSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 696
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 697 GLPKVEQVLEVRSIDSI 713
>gi|342316364|ref|YP_004769937.1| RNA polymerase beta' subunit (chloroplast) [Wolffia australiana]
gi|341834229|gb|AEK94498.1| RNA polymerase beta' subunit [Wolffia australiana]
Length = 1366
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+LIV ATPGA HYG LH+G+ LVTFIYEK RS D+T+ L
Sbjct: 1078 KSGQVLIVDVDYLVIRSAKPYLATPGATVHGHYGETLHQGDTLVTFIYEKSRSGDITQGL 1137
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS + I
Sbjct: 1138 PKVEQVLEVRSIESI 1152
>gi|90403699|gb|ABD93743.1| RNA polymerase beta chain [Drimys winteri]
Length = 840
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 612 QIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 671
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 672 GLPKVEQVLEVRSVDSI 688
>gi|290489542|gb|ADD31155.1| RNA polymerase beta'' subunit protein [Meliosma aff. cuneifolia Moore
333]
Length = 1377
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLIVHVDSLVIRSAKPYLATTGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158
>gi|377657743|gb|AFB74305.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Weingartia kargliana]
Length = 843
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ TPG HYG +++G+ LVTFIYEKLRS D+T+
Sbjct: 615 HLKSGQVIIVQFDSVVIRSAKPYLVTPGTKVHGHYGEIIYEGDTLVTFIYEKLRSGDITQ 674
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV++VLE+RS D I
Sbjct: 675 GLPKVEKVLEVRSIDSI 691
>gi|90403651|gb|ABD93719.1| RNA polymerase beta chain [Meliosma squamulata]
Length = 861
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 633 HLKSGQVLIVHVDSLVIRSAKPYLATTGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 692
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 693 GLPKVEQVLEVRSIDSI 709
>gi|126165910|ref|YP_358662.2| RNA polymerase beta'' subunit [Nicotiana sylvestris]
gi|126165915|ref|NP_054486.2| RNA polymerase beta'' subunit [Nicotiana tabacum]
Length = 1388
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1145
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 LPKVEQVLEVRSVDSI 1161
>gi|90403775|gb|ABD93781.1| RNA polymerase beta chain [Chamaedorea tenella]
Length = 847
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 621 KSGQILIVHVDSLVIRSAKPYLATPGATVHSHYGEILYEGDTLVTFIYEKSRSGDITQGL 680
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 681 PKVEQILEVRSIDSI 695
>gi|90111009|sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|239977080|sp|P38550.2|RPOC2_TOBAC RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|2924258|emb|CAA77410.1| RNA polymerase beta'' subunit [Nicotiana tabacum]
gi|77799548|dbj|BAE46637.1| RNA polymerase beta'' subunit [Nicotiana sylvestris]
Length = 1392
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSVDSI 1165
>gi|115604924|ref|YP_784376.1| RNA polymerase beta' subunit [Drimys granadensis]
gi|122164451|sp|Q06H07.1|RPOC2_DRIGR RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|112032652|gb|ABH88287.1| RNA polymerase beta' subunit [Drimys granadensis]
Length = 1381
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 QIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1145
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1146 GLPKVEQVLEVRSVDSI 1162
>gi|90403837|gb|ABD93812.1| RNA polymerase beta chain [Oenothera organensis]
Length = 796
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+L+S Q+LIVQ ATPGA HYG L+ G+ +VTF+YEK RS D+T+
Sbjct: 568 YLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDTVVTFLYEKSRSGDITQ 627
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 628 GLPKVEQVLEVRSVDSI 644
>gi|139390142|ref|YP_001123715.1| RNA polymerase beta'' subunit [Lobularia maritima]
gi|212288326|sp|A4QLI4.1|RPOC2_LOBMA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|134286919|dbj|BAF50539.1| RNA polymerase beta subunit-2 [Lobularia maritima]
Length = 1371
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV+ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVERDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|408900005|gb|AFU94798.1| RpoC2, partial (chloroplast) [Lacistema robustum]
Length = 1630
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IV A TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1296 LKSGQVIIVHAGSVVLRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1355
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1356 LPKVEQVLEVRSIDSI 1371
>gi|90403867|gb|ABD93827.1| RNA polymerase beta chain [Schisandra sphenanthera]
Length = 816
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS Q+LIV ATPGA HYG L++G LVTFIYEK RS D+T+
Sbjct: 589 IKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGETLVTFIYEKSRSGDITQG 648
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 649 LPKVEQVLEVRSIDSI 664
>gi|408899985|gb|AFU94788.1| RpoC2, partial (chloroplast) [Euphorbia maculata]
Length = 1630
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 47/79 (59%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG L +G LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILSEGATLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|408900041|gb|AFU94816.1| RpoC2, partial (chloroplast) [Viola pubescens]
Length = 1629
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV AT GA HYG L+KG+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHVDSIGLRLAKPYLATTGATVHGHYGEILYKGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|374257005|gb|AEZ01417.1| RNA polymerase beta' subunit (chloroplast) [Japonolirion osense]
Length = 1378
Score = 71.2 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1077 KSGQILIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGL 1136
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 1137 PKVEQVLEVRSVDSI 1151
>gi|157690050|gb|ABV65712.1| RNA polymerase beta'' subunit (chloroplast) [Bulnesia arborea]
Length = 1369
Score = 71.2 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIVQ ATPGA HYG + +G+ LVTF+YEK RS D+T+
Sbjct: 1087 LKSGQVLIVQVDSVIIRSAKPYLATPGATVHGHYGKIIDEGDTLVTFLYEKSRSGDITQG 1146
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 LPKVEQVLEVRSIDSI 1162
>gi|343482046|gb|AEM44885.1| RNA polymerase beta chain [Strychnos spinosa]
Length = 467
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQ A PGA HYG +++G+ LVTF+YEK RS D+T+
Sbjct: 286 HLKSGQVIFVQVDSVVIRSAKPYLAIPGATVHGHYGEIIYEGDTLVTFLYEKSRSGDITQ 345
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 346 GLPKVEQVLEVRSIDSI 362
>gi|408900029|gb|AFU94810.1| RpoC2, partial (chloroplast) [Quiina glaziovii]
Length = 1613
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q+++V ATPGA HYG L++G LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIMVHVDSVVLRSAKPYLATPGATVHGHYGEILYEGATLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|374249694|ref|YP_005089324.1| rpoC2 gene product (chloroplast) [Silene vulgaris]
gi|329755676|gb|AEC04237.1| RNA polymerase beta' subunit (chloroplast) [Silene vulgaris]
Length = 1377
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK QI+IVQ ATPGA HYG + +G+ LVTFIYEK RS D+T+
Sbjct: 1075 HLKPGQIIIVQFDSVVIRSAKPCLATPGATVHGHYGEIISEGDTLVTFIYEKSRSGDITQ 1134
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1135 GLPKVEQVLEVRSVESI 1151
>gi|169143032|ref|YP_001687452.1| RNA polymerase beta'' subunit [Oenothera parviflora]
gi|212288336|sp|B0Z5C9.1|RPOC2_OENPA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|159895558|gb|ABX10122.1| RNA polymerase beta'' subunit [Oenothera parviflora]
Length = 1383
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+L+S Q+LIVQ ATPGA HYG L+ G+ +VTF+YEK RS D+T+
Sbjct: 1083 YLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDTVVTFLYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSVDSI 1159
>gi|90403787|gb|ABD93787.1| RNA polymerase beta chain [Stegolepis sp. Qiu 97132]
Length = 836
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 610 KSGQILIVNLDSLVIRSAKPYLATPGATVHGHYGKILYEGDTLVTFIYEKSRSGDITQGL 669
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 670 PKVEQILEVRSIDSI 684
>gi|90403941|gb|ABD93864.1| RNA polymerase beta chain [Peperomia argyreia]
Length = 722
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
+H+KS QI+ + ATPG HYG +++GN LVTF+YEK RS D+T
Sbjct: 550 SHIKSGQIVTIHDHSLVIRSAKPHLATPGTTVHGHYGEIIYEGNTLVTFLYEKSRSGDIT 609
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+QVLE+RS D I
Sbjct: 610 QGLPKVEQVLEVRSIDSI 627
>gi|169142861|ref|YP_001687284.1| RNA polymerase beta'' subunit [Oenothera glazioviana]
gi|212288335|sp|B0Z545.1|RPOC2_OENGL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|159895473|gb|ABX10038.1| RNA polymerase beta'' subunit [Oenothera glazioviana]
Length = 1383
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+L+S Q+LIVQ ATPGA HYG L+ G+ +VTF+YEK RS D+T+
Sbjct: 1083 YLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDTVVTFLYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSVDSI 1159
>gi|169142946|ref|YP_001687368.1| RNA polymerase beta'' subunit [Oenothera biennis]
gi|212288334|sp|B0Z4W1.1|RPOC2_OENBI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|159793119|gb|ABW98873.1| RNA polymerase beta'' subunit [Oenothera biennis]
Length = 1383
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+L+S Q+LIVQ ATPGA HYG L+ G+ +VTF+YEK RS D+T+
Sbjct: 1083 YLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDTVVTFLYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSVDSI 1159
>gi|164597819|ref|NP_084688.2| RNA polymerase beta'' subunit [Oenothera elata subsp. hookeri]
gi|172045798|sp|Q9MTM3.2|RPOC2_OENEH RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|162423686|emb|CAB67153.2| RNA polymerase beta'' subunit [Oenothera elata subsp. hookeri]
Length = 1383
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+L+S Q+LIVQ ATPGA HYG L+ G+ +VTF+YEK RS D+T+
Sbjct: 1083 YLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDTVVTFLYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSVDSI 1159
>gi|90403781|gb|ABD93784.1| RNA polymerase beta chain [Sparganium americanum]
Length = 834
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 607 IKSGQILIVNVDSLIIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 666
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+Q+LE+RS D I
Sbjct: 667 LPKVEQILEVRSIDSI 682
>gi|408899981|gb|AFU94786.1| RpoC2, partial (chloroplast) [Elaeodendron orientale]
Length = 1626
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IVQ +PGA HYG L +G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVQVDSVVIRSAKPYLTSPGATLHGHYGEILSEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|408899961|gb|AFU94776.1| RpoC2, partial (chloroplast) [Balanops pachyphylla]
Length = 1630
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1296 LKSGQVIIVHVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1355
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1356 LPKVEQVLEVRSIDSI 1371
>gi|90403899|gb|ABD93843.1| RNA polymerase beta chain [Persoonia katerae]
Length = 827
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+K Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 599 HIKYGQVLIVHVDSLVIRSAKSYLATPGASVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 658
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 659 GLPKVEQVLEVRSIDSI 675
>gi|157690044|gb|ABV65709.1| RNA polymerase beta'' subunit, partial (chloroplast) [Begonia
cucullata]
Length = 1312
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS QI+IVQ AT GA HYGA +++G+ +VTFIYEK RS D+T+
Sbjct: 1090 HQKSGQIIIVQVDSVVIRLAKPYLATSGATVHLHYGAIIYEGDTVVTFIYEKSRSGDITQ 1149
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 GLPKVEQVLEVRSIDSI 1166
>gi|408900013|gb|AFU94802.1| RpoC2, partial (chloroplast) [Microdesmis caseariifolia]
Length = 1630
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 49/79 (62%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
+ LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 YXXLKSGQVIIVHVDSVIIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|90403677|gb|ABD93732.1| RNA polymerase beta chain [Potamogeton berchtoldii]
Length = 863
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LI+ ATPG HYG L +G LVTFIYEK RS D+T+
Sbjct: 635 HIKSGQVLIIHVDSLVIRSAKPYLATPGTTVHGHYGEILSEGETLVTFIYEKSRSGDITQ 694
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 695 GLPKVEQVLEVRSIDSI 711
>gi|323690387|gb|ADX99126.1| RNA polymerase beta II subunit [Duranta serratifolia]
Length = 678
Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQA TPGA HYG L++G+ L+T IYEK RS D+T+
Sbjct: 416 HLKSGQVILVQADSVVIRSAKPYLATPGATVHGHYGEILYQGDTLMTCIYEKSRSSDITQ 475
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 476 GLPKVEQVLEARSIDSI 492
>gi|90403839|gb|ABD93813.1| RNA polymerase beta chain [Coffea arabica]
Length = 850
Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK Q++ VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 622 HLKPGQVIFVQVDSVVIRSAKPYLATPGATVHGHYGETLYEGDILVTFIYEKSRSGDITQ 681
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+Q+LE+RS D I
Sbjct: 682 GLPKVEQILEVRSIDSI 698
>gi|158187147|gb|ABW22780.1| RNA polymerase beta'' subunit [Phaseolus vulgaris]
Length = 1366
Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS QIL VQ ATPG HYG L +G+ LVTFIY+K RS D+T+
Sbjct: 1087 HLKSGQILTVQMDSVGIRSANPYLATPGTTVHGHYGEILSEGDILVTFIYQKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|90403673|gb|ABD93730.1| RNA polymerase beta chain [Butomus umbellatus]
Length = 824
Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPG HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 596 HIKSGQVLIVHVDSLVIRSAKPYLATPGTTVHGHYGETLCEGDTLVTFIYEKSRSGDITQ 655
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 656 GLPKVEQVLEVRSIDSI 672
>gi|157690130|gb|ABV65752.1| RNA polymerase beta'' subunit, partial (chloroplast) [Leonia
glycycarpa]
Length = 1274
Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1062 HLKSGQVIIVHVDSIGLRSAKPYLATTGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1121
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1122 GLPKVEQVLEVRSIDSI 1138
>gi|408900017|gb|AFU94804.1| RpoC2, partial (chloroplast) [Passiflora ciliata]
Length = 1630
Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATP A RHYG L +G+ LV+F+YEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHVESIVLRSAKPYLATPEATVHRHYGEILDQGDTLVSFMYEKSRSSDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|116617098|ref|YP_817472.1| RNA polymerase beta' subunit [Coffea arabica]
gi|122153611|sp|A0A325.1|RPOC2_COFAR RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|116242154|gb|ABJ89669.1| RNA polymerase beta' subunit [Coffea arabica]
Length = 1391
Score = 70.9 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK Q++ VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1088 HLKPGQVIFVQVDSVVIRSAKPYLATPGATVHGHYGETLYEGDILVTFIYEKSRSGDITQ 1147
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+Q+LE+RS D I
Sbjct: 1148 GLPKVEQILEVRSIDSI 1164
>gi|189162261|ref|YP_001936507.1| RNA polymerase beta'' chain [Fagopyrum esculentum subsp. ancestrale]
gi|212288319|sp|B2XWN9.1|RPOC2_FAGEA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|166065347|gb|ABY79722.1| RNA polymerase beta'' chain [Fagopyrum esculentum subsp. ancestrale]
Length = 1365
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LK+ Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1074 LKAGQVLIVQVDSVVIRAAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQG 1133
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1134 LPKVEQVLEVRSLESI 1149
>gi|383931180|ref|YP_006073094.1| RNA polymerase beta' subunit (chloroplast) [Elaeis guineensis]
gi|325305698|gb|ADZ10859.1| RNA polymerase beta' subunit (chloroplast) [Elaeis guineensis]
Length = 1371
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1075 KSGQILIVHVDSLVIRSAKPYLATPGATVHSHYGEILYEGDTLVTFIYEKSRSGDITQGL 1134
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1135 PKVEQILEVRSIDSI 1149
>gi|408900035|gb|AFU94813.1| RpoC2, partial (chloroplast) [Scyphostegia borneensis]
Length = 1630
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV A T GA HYG L+KG+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVYADSVVLRSAKPHLATSGATVHGHYGEILYKGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|139387454|ref|YP_001122808.1| RNA polymerase beta' subunit [Phaseolus vulgaris]
gi|212288339|sp|A4GGA7.1|RPOC2_PHAVU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|112030976|gb|ABH88088.1| RNA polymerase beta' subunit [Phaseolus vulgaris]
Length = 1366
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS QIL VQ ATPG HYG L +G+ LVTFIY+K RS D+T+
Sbjct: 1087 HLKSGQILTVQMDSVGIRSANPYLATPGTTVHGHYGEILSEGDILVTFIYQKSRSGDITQ 1146
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163
>gi|90403681|gb|ABD93734.1| RNA polymerase beta chain [Tofieldia calyculata]
Length = 774
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 546 QIKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 605
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 606 GLPKVEQVLEVRSIESI 622
>gi|156598217|gb|ABU85372.1| RNA polymerase beta subunit [Elaeis oleifera]
Length = 1375
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1079 KSGQILIVHVDSLVIRSAKPYLATPGATVHSHYGEILYEGDTLVTFIYEKSRSGDITQGL 1138
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1139 PKVEQILEVRSIDSI 1153
>gi|90403757|gb|ABD93772.1| RNA polymerase beta chain [Calycanthus floridus]
Length = 861
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS QILIV+ ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 633 HIKSGQILIVRVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 692
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 693 GLPKVEQVLEARSIDSI 709
>gi|449326695|gb|AGE93274.1| RNA polymerase beta' subunit [Chamaedorea seifrizii]
Length = 1371
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1075 KSGQILIVHVDSLVIRSAKPYLATPGATVHSHYGEILYEGDTLVTFIYEKSRSGDITQGL 1134
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1135 PKVEQILEVRSIDSI 1149
>gi|349589917|gb|AEP94888.1| RNA polymerase beta' subunit [Vigna unguiculata]
Length = 1371
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ HLKS QIL VQ ATPG HYG L +G+ LVTFIY+K RS D
Sbjct: 1089 NEPHLKSGQILTVQMDSVGIRSANPYLATPGTTVHGHYGEILSEGDILVTFIYQKSRSGD 1148
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+RS D I
Sbjct: 1149 ITQGLPKVEQVLEVRSIDSI 1168
>gi|374413249|gb|AEZ49495.1| RNA polymerase beta'' subunit, partial [Ravenea hildebrandtii]
Length = 1385
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1079 KSGQILIVHVDSLVIRSAKPYLATPGATVHSHYGEILYEGDTLVTFIYEKSRSGDITQGL 1138
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1139 PKVEQILEVRSIDSI 1153
>gi|374413200|gb|AEZ49474.1| RNA polymerase beta'' subunit, partial [Chamaedorea seifrizii]
Length = 1375
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1079 KSGQILIVHVDSLVIRSAKPYLATPGATVHSHYGEILYEGDTLVTFIYEKSRSGDITQGL 1138
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1139 PKVEQILEVRSIDSI 1153
>gi|157690068|gb|ABV65721.1| RNA polymerase beta'' subunit, partial (chloroplast) [Clidemia
dentata]
Length = 1275
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ +VQ ATPGA HYG ++G+ LVTFIYEK RS D+T+
Sbjct: 1052 LKSGQVFLVQVDSVVIRLAKPYLATPGATVHGHYGEIFYEGDTLVTFIYEKSRSGDITQG 1111
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1112 LPKVEQVLEVRSIDSI 1127
>gi|456061760|ref|YP_007475951.1| RNA polymerase beta' subunit [Bismarckia nobilis]
gi|449326434|gb|AGE93016.1| RNA polymerase beta' subunit [Bismarckia nobilis]
Length = 1383
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1077 KSGQILIVHVDSLVIRSAKPYLATPGATVHSHYGEILYEGDTLVTFIYEKSRSGDITQGL 1136
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1137 PKVEQILEVRSIDSI 1151
>gi|408899971|gb|AFU94781.1| RpoC2, partial (chloroplast) [Centroplacus glaucinus]
Length = 1629
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 49/83 (59%), Gaps = 13/83 (15%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG L++G LVTFIYEK RS D+
Sbjct: 1292 HXXLKSGQVMIVHVDSVVIRSAKPYLATPGATVHGHYGEILYEGVTLVTFIYEKSRSGDI 1351
Query: 49 TRALSKVKQVLEIRSFDLILACL 71
T+ L KV+QVLE+ S D IL L
Sbjct: 1352 TQGLQKVEQVLEVCSIDSILISL 1374
>gi|90403861|gb|ABD93824.1| RNA polymerase beta chain [Lactoris fernandeziana]
Length = 784
Score = 70.9 bits (172), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LI+ ATPGA HYG L +G+ L+TFIYEK RS D+T+
Sbjct: 594 HIKSGQVLILYLDSLVIRSAKPHLATPGATVHGHYGEILDEGDTLITFIYEKSRSGDITQ 653
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 654 GLPKVEQVLEVRSIDSI 670
>gi|393396106|ref|YP_006460345.1| RNA polymerase beta' subunit (chloroplast) [Vigna unguiculata]
gi|387598470|gb|AFJ91862.1| RNA polymerase beta' subunit (chloroplast) [Vigna unguiculata]
Length = 1371
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ HLKS QIL VQ ATPG HYG L +G+ LVTFIY+K RS D
Sbjct: 1089 NEPHLKSGQILTVQMDSVGIRSANPYLATPGTTVHGHYGEILSEGDILVTFIYQKSRSGD 1148
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+RS D I
Sbjct: 1149 ITQGLPKVEQVLEVRSIDSI 1168
>gi|115391892|ref|YP_778480.1| RNA polymerase beta'' subunit [Jasminum nudiflorum]
gi|122164983|sp|Q06RE1.1|RPOC2_JASNU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|110456213|gb|ABG74618.1| RNA polymerase beta II subunit [Jasminum nudiflorum]
Length = 1397
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+++VQ ATPG HYG L++G+ L+TF+YEK RS D+T+
Sbjct: 1094 HLKSGQVILVQVASVVIRSAKPYLATPGTTVHGHYGEILYEGDTLITFLYEKSRSSDITQ 1153
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1154 GLPKVEEVFEVRSIDSI 1170
>gi|408899963|gb|AFU94777.1| RpoC2, partial (chloroplast) [Bergia texana]
Length = 1629
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IV ATPGA HYG L+ G+ LVTFIYEK RS D+T+
Sbjct: 1295 LKSGQVIIVHVDSVVIRSAKPYLATPGATVHGHYGEILYAGDTLVTFIYEKSRSGDITQG 1354
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1355 LPKVEQVLEVRSIDSI 1370
>gi|289066828|ref|YP_003434346.1| RNA polymerase beta' subunit [Vigna radiata]
gi|259020015|gb|ACV90213.1| RNA polymerase beta' subunit [Vigna radiata]
Length = 1371
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ HLKS QIL VQ ATPG HYG L +G+ LVTFIY+K RS D
Sbjct: 1089 NEPHLKSGQILTVQMDSVGIRSANPYLATPGTTVHGHYGEILSEGDILVTFIYQKSRSGD 1148
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+QVLE+RS D I
Sbjct: 1149 ITQGLPKVEQVLEVRSIDSI 1168
>gi|90403783|gb|ABD93785.1| RNA polymerase beta chain [Vriesea splendens]
Length = 849
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 623 KSGQILIVNVDFLVIRSAKSYLATPGATVHGHYGKILYEGDTLVTFIYEKSRSGDITQGL 682
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 683 PKVEQILEVRSIDSI 697
>gi|456061648|ref|YP_007475779.1| RNA polymerase beta' subunit [Pseudophoenix vinifera]
gi|449326260|gb|AGE92844.1| RNA polymerase beta' subunit [Pseudophoenix vinifera]
Length = 1376
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1075 KSGQILIVHVDSLVIRSAKLYLATPGATVHSHYGEILYEGDTLVTFIYEKSRSGDITQGL 1134
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1135 PKVEQILEVRSIDSI 1149
>gi|408900037|gb|AFU94814.1| RpoC2, partial (chloroplast) [Trigonia sp. CCD-2012]
Length = 1630
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1296 LKSGQVIIVHIDSVVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1355
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1356 LPKVEQVLEVRSIDSI 1371
>gi|12229937|sp|Q9THV5.1|RPOC2_SINAL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|5725463|emb|CAB48415.2| RNA polymerase A beta prime prime subunit [Sinapis alba]
Length = 1384
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1088 YLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1147
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1148 GLPKVEQVLEVRSIDSI 1164
>gi|336239393|gb|AEI27554.1| RNA polymerase beta subunit [Broussonetia papyrifera]
Length = 1247
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA HY + +G+ LVTFIYEK RS D+T+
Sbjct: 1036 HLKSGQVIIVQIDSVVIRSAKSYLATPGATVHGHYREIVSEGDTLVTFIYEKSRSGDITQ 1095
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1096 GLPKVEQVLEVRSIDSI 1112
>gi|383930498|ref|YP_005089942.1| rpoC2 gene product (chloroplast) [Brassica napus]
gi|262400795|gb|ACY66284.1| RNA polymerase beta'' subunit [Brassica napus]
Length = 1378
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1081 YLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1140
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1141 GLPKVEQVLEVRSIDSI 1157
>gi|90403759|gb|ABD93773.1| RNA polymerase beta chain [Chimonanthus praecox]
Length = 857
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS QILIV+ ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 633 HIKSGQILIVRVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 692
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 693 GLPKVEQVLEARSIDSI 709
>gi|157690032|gb|ABV65703.1| RNA polymerase beta'' subunit, partial (chloroplast) [Alnus
alnobetula subsp. sinuata]
Length = 1273
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
LKS Q+LIVQ AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1052 QLKSGQVLIVQIDSVVIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1111
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1112 GLPKVEQVLEVRSIDSI 1128
>gi|90403827|gb|ABD93807.1| RNA polymerase beta chain [Hernandia ovigera]
Length = 843
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA H+G L +G+ L+TFIYEK RS D+T+
Sbjct: 635 HIKSGQVLIVHVDSLVIRLAKPHLATPGATVHGHFGEILSEGDTLITFIYEKSRSGDITQ 694
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 695 GLPKVEQVLEARSIDSI 711
>gi|13518438|ref|NP_084798.1| RNA polymerase beta'' subunit [Lotus japonicus]
gi|23822109|sp|Q9BBS7.1|RPOC2_LOTJA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|13358979|dbj|BAB33196.1| RNA polymerase beta' subunit-2 [Lotus japonicus]
Length = 1332
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q++ VQ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1062 NLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQ 1121
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1122 GLPKVEQVLEVRSIDSI 1138
>gi|41017946|sp|Q7YJY0.1|RPOC2_CALFG RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|32399369|emb|CAD28711.1| RNA polymerase beta' subunit-2 [Calycanthus floridus var. glaucus]
Length = 1377
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS QILIV+ ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HIKSGQILIVRVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 1143 GLPKVEQVLEARSIDSI 1159
>gi|126023271|ref|NP_862744.2| RNA polymerase beta'' subunit [Calycanthus floridus var. glaucus]
Length = 1373
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS QILIV+ ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HIKSGQILIVRVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 1138
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 1139 GLPKVEQVLEARSIDSI 1155
>gi|157690174|gb|ABV65774.1| RNA polymerase beta'' subunit, partial (chloroplast) [Securidaca
diversifolia]
Length = 1329
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IVQ ATPGA H G L++G+ LVTF+YEK RS D+T+
Sbjct: 1118 HLKSGQVIIVQVDSVIIRSAKPYLATPGATVHGHCGEILYEGDPLVTFLYEKSRSNDITQ 1177
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV++VLE RSFD I
Sbjct: 1178 GLPKVERVLEARSFDSI 1194
>gi|146261499|gb|ABQ15059.1| RNA polymerase beta' subunit [Aphanopetalum resinosum]
Length = 811
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IVQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 632 LKSGQVVIVQVDSIVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQG 691
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS I
Sbjct: 692 LPKVEQVLEVRSIHSI 707
>gi|408899997|gb|AFU94794.1| RpoC2, partial (chloroplast) [Hypericum fraseri]
Length = 1614
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IV ATPGA HYG L++G+ L+TF+YEK RS D+T+
Sbjct: 1296 LKSGQVIIVHLDSVVLRSAQPYLATPGATVHGHYGEILYEGDTLITFLYEKARSGDITQG 1355
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1356 LPKVEQVLEVRSIDSI 1371
>gi|374413247|gb|AEZ49494.1| RNA polymerase beta'' subunit, partial [Puya laxa]
Length = 1385
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1079 KSGQILIVNVDSLVIRSAKPYLATPGATVHGHYGKILYEGDTLVTFIYEKSRSGDITQGL 1138
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1139 PKVEQILEVRSIDSI 1153
>gi|374413233|gb|AEZ49488.1| RNA polymerase beta'' subunit, partial [Navia saxicola]
Length = 1387
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1081 KSGQILIVNVDSLVIRSAKPYLATPGATVHGHYGKILYEGDTLVTFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1141 PKVEQILEVRSIDSI 1155
>gi|157690112|gb|ABV65743.1| RNA polymerase beta'' subunit, partial (chloroplast) [Hymenanthera
alpina]
Length = 1313
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1090 HLKSGQVIIVHVDSIGLRLAKPYLATTGATLHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1149
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 GLPKVEQVLEVRSIDSI 1166
>gi|69216861|gb|AAZ03983.1| RNA polymerase beta'' chain [Typha latifolia]
Length = 1387
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1081 KSGQILIVNVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1141 PKVEQILEVRSIDSI 1155
>gi|374413214|gb|AEZ49480.1| RNA polymerase beta'' subunit, partial [Fosterella caulescens]
Length = 1388
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1082 KSGQILIVNVDSLVIRSAKPYLATPGATVHGHYGKILYEGDTLVTFIYEKSRSGDITQGL 1141
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1142 PKVEQILEVRSIDSI 1156
>gi|374413196|gb|AEZ49472.1| RNA polymerase beta'' subunit, partial [Brocchinia micrantha]
Length = 1388
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1082 KSGQILIVNVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGL 1141
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1142 PKVEQILEVRSIDSI 1156
>gi|335352807|gb|AEH42626.1| RNA polymerase beta subunit [Hypericum fraseri]
Length = 1385
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IV ATPGA HYG L++G+ L+TF+YEK RS D+T+
Sbjct: 1097 LKSGQVIIVHLDSVVLRSAQPYLATPGATVHGHYGEILYEGDTLITFLYEKARSGDITQG 1156
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1157 LPKVEQVLEVRSIDSI 1172
>gi|289065079|ref|YP_003433965.1| RNA polymerase beta' subunit [Typha latifolia]
gi|281371762|gb|ADA63689.1| RNA polymerase beta' subunit [Typha latifolia]
Length = 1383
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1077 KSGQILIVNVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGL 1136
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1137 PKVEQILEVRSIDSI 1151
>gi|374413243|gb|AEZ49492.1| RNA polymerase beta'' subunit, partial [Pitcairnia feliciana]
Length = 1389
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1083 KSGQILIVNVDSLVIRSAKPYLATPGATVHGHYGKILYEGDTLVTFIYEKSRSGDITQGL 1142
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1143 PKVEQILEVRSIDSI 1157
>gi|374413252|gb|AEZ49496.1| RNA polymerase beta'' subunit, partial [Sparganium eurycarpum]
Length = 1387
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1081 KSGQILIVNVDSLIIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1141 PKVEQILEVRSIDSI 1155
>gi|292559500|ref|YP_003540921.1| DNA-directed RNA polymerase beta' chain [Phoenix dactylifera]
gi|290790908|gb|ADD63163.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Phoenix
dactylifera]
gi|294620567|gb|ADF28136.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Phoenix
dactylifera]
Length = 1381
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTF+YEK RS D+T+ L
Sbjct: 1075 KSGQILIVHVDSLVIRSAKPYLATPGATVHSHYGEILYEGDTLVTFVYEKSRSGDITQGL 1134
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1135 PKVEQILEVRSIDSI 1149
>gi|90403813|gb|ABD93800.1| RNA polymerase beta chain [Hortonia floribunda]
Length = 790
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 600 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 659
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 660 GLPKVEQVLETRSIDSI 676
>gi|90403939|gb|ABD93863.1| RNA polymerase beta chain [Laurus nobilis]
Length = 760
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 584 HIKSSQVLIVHVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 643
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 644 GLPKVEQVLEARSIDSI 660
>gi|408900023|gb|AFU94807.1| RpoC2, partial (chloroplast) [Podocalyx loranthoides]
Length = 1630
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPG HYG L++G+ LV+FIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHLDSVVIRSAKPYLATPGTTVHGHYGEILYEGDTLVSFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSVDSI 1371
>gi|90403685|gb|ABD93736.1| RNA polymerase beta chain [Acorus calamus]
Length = 838
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 13/81 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q++IV ATPGA HYG L+ G+ L+TFIYEK RS D+T+
Sbjct: 610 QIKSGQVIIVHVDSFVIRAAKPYLATPGATVHGHYGEILYGGDTLITFIYEKSRSGDITQ 669
Query: 51 ALSKVKQVLEIRSFDLILACL 71
L KV+QVLE+RS D I L
Sbjct: 670 GLPKVEQVLEVRSIDSISTNL 690
>gi|90403915|gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira]
Length = 774
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+L+V ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 553 KSGQVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGL 612
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 613 PKVEQVLEVRSIDSI 627
>gi|334832666|gb|AEH04472.1| RNA polymerase beta subunit [Rhizophora mangle]
Length = 1393
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS Q++IV ATPGA HYG L++G+ VTFIYEK RS D+T+
Sbjct: 1090 YLKSGQVIIVHVDSLVIRSAKLYLATPGATVHGHYGEILYEGDTFVTFIYEKSRSGDITQ 1149
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 GLPKVEQVLEVRSIDSI 1166
>gi|357471495|ref|XP_003606032.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355507087|gb|AES88229.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1368
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++ VQ ATP A HYG L++G+ LVTFIYEK RS D+
Sbjct: 1085 HLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQGDILVTFIYEKSRSSDI 1144
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+Q+LEIRS D I
Sbjct: 1145 TQGLPKVEQILEIRSIDSI 1163
>gi|139389791|ref|YP_001123452.1| RNA polymerase beta'' subunit [Crucihimalaya wallichii]
gi|212277053|sp|A4QKS1.1|RPOC2_CRUWA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|134286653|dbj|BAF50276.1| RNA polymerase beta subunit-2 [Crucihimalaya wallichii]
Length = 1379
Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
LKS Q+LIVQ ATPGA HY L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 QLKSGQVLIVQRDSVVIRAAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159
>gi|225544114|ref|YP_002720102.1| rpoC2 [Jatropha curcas]
gi|224979555|gb|ACN72682.1| rpoC2 [Jatropha curcas]
Length = 1394
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV+ A PGA HYG ++G+ LVTF+YEK RS D+T+
Sbjct: 1098 HLKSGQVIIVRMDSVVIRSAKPYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSRSGDITQ 1157
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1158 GLPKVEQVLEVRSIDSI 1174
>gi|90403761|gb|ABD93774.1| RNA polymerase beta chain [Idiospermum australiense]
Length = 851
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS QILIV ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 623 HIKSGQILIVHVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 682
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 683 GLPKVEQVLEARSIDSI 699
>gi|90403767|gb|ABD93777.1| RNA polymerase beta chain [Carludovica palmata]
Length = 844
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG ++G+ LVTFIYEK RS D+T+ L
Sbjct: 618 KSGQILIVHLDSLVIRSAKPYLATPGATVHGHYGEIFYEGDTLVTFIYEKSRSGDITQGL 677
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 678 PKVEQVLEVRSIDSI 692
>gi|90403857|gb|ABD93822.1| RNA polymerase beta chain [Philydrum lanuginosum]
Length = 772
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 47/75 (62%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILI+ ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 580 KSGQILILHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGL 639
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 640 PKVEQILEVRSIDAI 654
>gi|196154823|ref|YP_001381726.2| RNA polymerase beta' subunit [Medicago truncatula]
Length = 1374
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++ VQ ATP A HYG L++G+ LVTFIYEK RS D+
Sbjct: 1085 HLKLKSGQVITVQMDSVIIRSANPYLATPEATIHGHYGEILYQGDILVTFIYEKSRSSDI 1144
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+Q+LEIRS D I
Sbjct: 1145 TQGLPKVEQILEIRSIDSI 1163
>gi|90403931|gb|ABD93859.1| RNA polymerase beta chain [Hedycarya arborea]
Length = 761
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 587 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 646
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 647 GLPKVEQVLEARSIDSI 663
>gi|90403841|gb|ABD93814.1| RNA polymerase beta chain [Cinnamomum camphora]
Length = 777
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 587 HIKSSQVLIVHVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 646
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 647 GLPKVEQVLEARSIDSI 663
>gi|408830235|ref|YP_006883253.1| RNA polymerase beta subunit (chloroplast) [Fragaria vesca subsp.
bracteata]
gi|428697189|ref|YP_007025373.1| RNA polymerase beta subunit (chloroplast) [Fragaria chiloensis]
gi|357198728|gb|AET62644.1| RNA polymerase beta subunit (chloroplast) [Fragaria chiloensis]
gi|378554697|gb|AFC17632.1| RNA polymerase beta subunit (chloroplast) [Fragaria vesca subsp.
bracteata]
gi|407080456|gb|AFS89545.1| RNA polymerase beta subunit (chloroplast) [Fragaria chiloensis]
Length = 1387
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1085 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 1144
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1145 LPKVEQVLEVRSIDSI 1160
>gi|449326869|gb|AGE93446.1| RNA polymerase beta' subunit [Xiphidium caeruleum]
Length = 1376
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 14/81 (17%)
Query: 1 DHTHLK-SDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSC 46
D +++K S QI+IV ATPGA HYG L+KG+ LVTF+YEK RS
Sbjct: 1076 DESYVKNSGQIIIVHLDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFLYEKSRSG 1135
Query: 47 DLTRALSKVKQVLEIRSFDLI 67
D+T+ L KV+Q+LE+RS D I
Sbjct: 1136 DITQGLPKVEQILEVRSIDSI 1156
>gi|90403847|gb|ABD93817.1| RNA polymerase beta chain [Daphnandra micrantha]
Length = 824
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 602 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHCGEILYEGDALVTFIYEKSRSGDITQ 661
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 662 GLPKVEQVLEARSIDSI 678
>gi|90403835|gb|ABD93811.1| RNA polymerase beta chain [Cryptocarya meisneriana]
Length = 712
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 527 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 586
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 587 GLPKVEQVLEARSIDSI 603
>gi|377657735|gb|AFB74301.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Opuntia decumbens]
Length = 799
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPG R YG ++ G+ LVTFIYEK RS D+T+
Sbjct: 615 HLKSGQVLIVQFDSVVIRSAKPYLATPGTRVQRDYGEIIYGGDILVTFIYEKSRSSDITQ 674
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 675 GLPKVEQVLEARSIDSI 691
>gi|157690202|gb|ABV65788.1| RNA polymerase beta'' subunit, partial (chloroplast) [Viviania
marifolia]
Length = 1281
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HL++ Q+LIV ATPG HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1071 HLQAGQVLIVHLDSVVIRAAKPYLATPGTTVHGHYGEILYRGDTLITFIYEKSRSGDITQ 1130
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV++VLE+RS D I
Sbjct: 1131 GLPKVERVLEVRSIDSI 1147
>gi|428697275|ref|YP_007025458.1| RNA polymerase beta subunit (chloroplast) [Fragaria virginiana]
gi|363989835|gb|AET62729.1| RNA polymerase beta subunit (chloroplast) [Fragaria virginiana]
Length = 1387
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1085 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 1144
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1145 LPKVEQVLEVRSIDSI 1160
>gi|408830310|ref|YP_006883327.1| RNA polymerase beta subunit [Fragaria mandshurica]
gi|378554772|gb|AFC17706.1| RNA polymerase beta subunit [Fragaria mandshurica]
Length = 1387
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1085 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 1144
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1145 LPKVEQVLEVRSIDSI 1160
>gi|402238672|gb|AFQ39087.1| RNA polymerase beta subunit, partial [Fragaria x ananassa subsp.
cuneifolia]
gi|402238675|gb|AFQ39089.1| RNA polymerase beta subunit, partial [Fragaria virginiana]
Length = 907
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 605 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 664
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 665 LPKVEQVLEVRSIDSI 680
>gi|325126855|ref|YP_004286092.1| RNA polymerase beta subunit [Fragaria vesca subsp. vesca]
gi|324022767|gb|ADY15341.1| RNA polymerase beta subunit [Fragaria vesca subsp. vesca]
Length = 1387
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1085 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 1144
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1145 LPKVEQVLEVRSIDSI 1160
>gi|90403683|gb|ABD93735.1| RNA polymerase beta chain [Acorus gramineus]
Length = 838
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 13/81 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q++IV ATPGA HYG L+ G+ L+TFIYEK RS D+T+
Sbjct: 610 QIKSGQVIIVHVDSFVIRAAKPYLATPGATVHGHYGEILYVGDTLITFIYEKSRSGDITQ 669
Query: 51 ALSKVKQVLEIRSFDLILACL 71
L KV+QVLE+RS D I L
Sbjct: 670 GLPKVEQVLEVRSIDSISTNL 690
>gi|90403913|gb|ABD93850.1| RNA polymerase beta chain [Sanguinaria canadensis]
Length = 853
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LK+ Q+LIV+ ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 633 LKAGQVLIVRVDSLVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 692
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 693 LPKVEQVLEARSIDSI 708
>gi|402238681|gb|AFQ39093.1| RNA polymerase beta subunit, partial [Fragaria orientalis]
Length = 907
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 605 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 664
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 665 LPKVEQVLEVRSIDSI 680
>gi|456330882|ref|YP_007475865.1| RNA polymerase beta' subunit [Calamus caryotoides]
gi|449326347|gb|AGE92930.1| RNA polymerase beta' subunit [Calamus caryotoides]
Length = 1372
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1066 KSGQIFIVHVDSLVIRSAKPYLATPGATVHSHYGEILYEGDTLVTFIYEKSRSGDITQGL 1125
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1126 PKVEQILEVRSIDSI 1140
>gi|75755991|gb|ABA27050.1| TO73-1 [Taraxacum officinale]
Length = 71
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 45/71 (63%), Gaps = 13/71 (18%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+LIVQ ATPGA HYG L++G+ LVTFIY K RS D+T+ L
Sbjct: 1 KSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYGKSRSGDITQGL 60
Query: 53 SKVKQVLEIRS 63
KV+QVLE+RS
Sbjct: 61 PKVEQVLEVRS 71
>gi|402238687|gb|AFQ39097.1| RNA polymerase beta subunit, partial [Fragaria chinensis]
gi|402238696|gb|AFQ39103.1| RNA polymerase beta subunit, partial [Fragaria daltoniana]
gi|402238699|gb|AFQ39105.1| RNA polymerase beta subunit, partial [Fragaria corymbosa]
gi|402238702|gb|AFQ39107.1| RNA polymerase beta subunit, partial [Fragaria gracilis]
Length = 907
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 605 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 664
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 665 LPKVEQVLEVRSIDSI 680
>gi|402238678|gb|AFQ39091.1| RNA polymerase beta subunit, partial [Fragaria bucharica]
gi|402238684|gb|AFQ39095.1| RNA polymerase beta subunit, partial [Fragaria viridis]
Length = 907
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 605 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 664
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 665 LPKVEQVLEVRSIDSI 680
>gi|402238669|gb|AFQ39085.1| RNA polymerase beta subunit, partial [Fragaria x bifera]
Length = 907
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 605 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 664
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 665 LPKVEQVLEVRSIDSI 680
>gi|402238666|gb|AFQ39083.1| RNA polymerase beta subunit, partial [Fragaria vesca subsp. vesca]
Length = 907
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 605 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 664
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 665 LPKVEQVLEVRSIDSI 680
>gi|169142711|ref|YP_001687138.1| RNA polymerase beta'' subunit [Oenothera argillicola]
gi|212288333|sp|B0Z4M7.1|RPOC2_OENAR RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|159792949|gb|ABW98705.1| RNA polymerase beta'' subunit [Oenothera argillicola]
Length = 1383
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+L+S Q+LIV+ ATPGA HYG L+ G+ +VTF+YEK RS D+T+
Sbjct: 1083 YLRSGQVLIVRLDSVVIRSAKPYLATPGATVHGHYGEILYDGDTVVTFLYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSVDSI 1159
>gi|408899957|gb|AFU94774.1| RpoC2, partial (chloroplast) [Anthodiscus peruanus]
Length = 1629
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
ATPGA HYG L++G+ LVTFIYEK RS D+T+ L KV+QVLE+RS D I
Sbjct: 1318 ATPGATVHSHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSI 1370
>gi|90403809|gb|ABD93798.1| RNA polymerase beta chain [Atherosperma moschatum]
Length = 857
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 629 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 688
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 689 GLPKVEQVLEARSIDSI 705
>gi|146261535|gb|ABQ15077.1| RNA polymerase beta' subunit [Rhodoleia championii]
Length = 813
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
ATPGA HYG L++G+ LVTFIYEK RS D+T+ L KV+QVLE+RS D I
Sbjct: 636 ATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSI 688
>gi|402238705|gb|AFQ39109.1| RNA polymerase beta subunit, partial [Fragaria iinumae]
Length = 907
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 605 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 664
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 665 LPKVEQVLEVRSIDSI 680
>gi|402238690|gb|AFQ39099.1| RNA polymerase beta subunit, partial [Fragaria moupinensis]
gi|402238693|gb|AFQ39101.1| RNA polymerase beta subunit, partial [Fragaria tibetica]
Length = 907
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++V ATPGA HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 605 LKSGQVIVVHLDSLVIRSAKPYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQG 664
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 665 LPKVEQVLEVRSIDSI 680
>gi|56122499|gb|AAV74373.1| RpoC2 [Acorus gramineus]
Length = 602
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 13/81 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q++IV ATPGA HYG L+ G+ L+TFIYEK RS D+T+
Sbjct: 298 QIKSGQVIIVHVDSFVIRAAKPYLATPGATVHGHYGEILYVGDTLITFIYEKSRSGDITQ 357
Query: 51 ALSKVKQVLEIRSFDLILACL 71
L KV+QVLE+RS D I L
Sbjct: 358 GLPKVEQVLEVRSIDSISTNL 378
>gi|408900031|gb|AFU94811.1| RpoC2, partial (chloroplast) [Rhizophora mangle]
Length = 1626
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
+ LKS Q++IV ATPGA HYG L++G+ VTFIYEK RS D+
Sbjct: 1289 YXXLKSGQVIIVHVDSLVIRSAKLYLATPGATVHGHYGEILYEGDTFVTFIYEKSRSGDI 1348
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1349 TQGLPKVEQVLEVRSIDSI 1367
>gi|90403883|gb|ABD93835.1| RNA polymerase beta chain [Takhtajania perrieri]
Length = 746
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q+LIV ATPGA HYG L++G+ LV FIYEK RS D+T+
Sbjct: 594 QIKSGQVLIVHVDSLGIRSAKPHLATPGATVHGHYGEILYEGDTLVIFIYEKSRSGDITQ 653
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 654 GLPKVEQVLEVRSIDSI 670
>gi|408899987|gb|AFU94789.1| RpoC2, partial (chloroplast) [Euphronia guianensis]
Length = 1599
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV A PGA HYG L++G+ L TFIYE+ RS D+
Sbjct: 1290 HXXLKSGQVIIVYVDSVVIRSAKPYLANPGATVHGHYGEILYEGDTLATFIYERWRSSDI 1349
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1350 TQGLPKVEQVLEVRSIDSI 1368
>gi|197131644|gb|ACH47340.1| RNA polymerase beta subunit [Geranium macrorrhizum]
Length = 1421
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIVQ ATPG HYG L++G LVTF+YEK RS D+T+
Sbjct: 1115 LKSGQVLIVQGGYVIIRLAKPYLATPGTTVHGHYGEILYEGGTLVTFLYEKSRSVDITQG 1174
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1175 LPKVERVFEVRSIDSI 1190
>gi|90403739|gb|ABD93763.1| RNA polymerase beta chain [Trillium sp. Qiu 95016]
Length = 826
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV A PGA HYG L++G LVTFIYEK RS D+T+ L
Sbjct: 612 KSGQILIVNVDSLVIRSAKPYLAIPGATVHGHYGKILYEGETLVTFIYEKSRSGDITQGL 671
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 672 PKVEQVLEVRSIDSI 686
>gi|408899999|gb|AFU94795.1| RpoC2, partial (chloroplast) [Hypericum perforatum]
Length = 1614
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IV ATPGA HYG L++G+ L+TF+YEK RS D+T+
Sbjct: 1296 LKSGQVIIVHLDSVVLRSAQPFLATPGATVHGHYGEILYEGDTLITFLYEKARSSDITQG 1355
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1356 LPKVEQVLEVRSINSI 1371
>gi|90403771|gb|ABD93779.1| RNA polymerase beta chain [Lilium sp. Qiu 96072]
Length = 835
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 39/53 (73%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
ATPGA HYG L++G LVTFIYEK RS D+T+ L KV+QVLE+RS D I
Sbjct: 631 ATPGATVHGHYGEILYEGKTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSI 683
>gi|157690194|gb|ABV65784.1| RNA polymerase beta'' subunit, partial (chloroplast) [Thymelaea
sanamunda]
Length = 1285
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIV+ ATPGA YG L++G+ LVTFIYEK RS D+T+
Sbjct: 1060 LKSGQVLIVRLDSIVIRTAKPFLATPGATVHGDYGEILYEGDTLVTFIYEKSRSGDITQG 1119
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1120 LPKVEQVLEVRSIDSI 1135
>gi|90403753|gb|ABD93770.1| RNA polymerase beta chain [Spathiphyllum wallisii]
Length = 856
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+LIV AT GA HYG LH+G+ LVTFIYEK RS D+T+ L
Sbjct: 630 KSGQVLIVHVDYLVIRSAKPYLATSGATVHGHYGETLHEGDTLVTFIYEKSRSGDITQGL 689
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 690 PKVEQVLEVRSIDSI 704
>gi|157690116|gb|ABV65745.1| RNA polymerase beta'' subunit, partial (chloroplast) [Hypseocharis
bilobata]
Length = 1276
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 46/76 (60%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LI Q ATPGA HYG L++G LVTFIYEK RS D+T+
Sbjct: 1063 LKSGQVLIAQVDHVIIRSAKPYLATPGATVHGHYGEILYEGGTLVTFIYEKSRSGDITQG 1122
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1123 LPKVEKVFEVRSIDSI 1138
>gi|161622300|ref|YP_001586172.1| RNA polymerase beta'' subunit [Acorus americanus]
gi|90111006|sp|Q3V544.1|RPOC2_ACOCL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|69216853|gb|AAZ03979.1| RNA polymerase beta'' chain [Acorus americanus]
gi|74381699|emb|CAI53784.1| RNA polymerase beta' subunit-2 [Acorus calamus]
gi|160369843|gb|ABX38734.1| RNA polymerase beta'' subunit [Acorus americanus]
Length = 1386
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q++IV ATPGA HYG L+ G+ L+TFIYEK RS D+T+
Sbjct: 1082 QIKSGQVIIVHVDSFVIRAAKPYLATPGATVHGHYGEILYGGDTLITFIYEKSRSGDITQ 1141
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158
>gi|126022801|ref|YP_319755.2| RNA polymerase beta'' subunit [Acorus calamus]
Length = 1382
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q++IV ATPGA HYG L+ G+ L+TFIYEK RS D+T+
Sbjct: 1078 QIKSGQVIIVHVDSFVIRAAKPYLATPGATVHGHYGEILYGGDTLITFIYEKSRSGDITQ 1137
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1138 GLPKVEQVLEVRSIDSI 1154
>gi|90403741|gb|ABD93764.1| RNA polymerase beta chain [Dicentra sp. Qiu 95026]
Length = 849
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++++ ATPGA HYGA L++G+ LVT IYEK RS D+T+
Sbjct: 621 HLKSGQVIVIHVDSLVIRSAKPYLATPGATVRGHYGAILYEGDTLVTCIYEKSRSSDITQ 680
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS I
Sbjct: 681 GLPKVEQVLEVRSIHSI 697
>gi|157690040|gb|ABV65707.1| RNA polymerase beta'' subunit, partial (chloroplast) [Atuna racemosa]
Length = 1279
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
ATPGA HYG L++G+ LVTFIYEK RS D+T+ L KV+QVLE+RS D I
Sbjct: 1083 ATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSI 1135
>gi|326457378|gb|ADZ74638.1| RNA polymerase beta subunit [Gossypium stocksii]
Length = 1391
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQA TP A HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1087 LKSGQVFIVQADSIVIRSAKPYLATPVATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1146
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 LPKVEQVLEVRSIDSI 1162
>gi|197131642|gb|ACH47339.1| RNA polymerase beta subunit [Geranium carolinianum]
Length = 1420
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 45/76 (59%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIVQ ATPG HYG L+ G LVTF+YEK RS D+T+
Sbjct: 1114 LKSGQVLIVQGGYVIIRSAKPYLATPGTTVHGHYGEILYGGGTLVTFLYEKSRSADITQG 1173
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1174 LPKVERVFEVRSIDSI 1189
>gi|290489548|gb|ADD31158.1| RNA polymerase beta'' subunit protein [Phoradendron serotinum]
Length = 1370
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
L+S Q+LIVQ ATPG+ HYG+ L++GN LVTF+YEK +S D+T+
Sbjct: 1089 LQSGQVLIVQVHSLVIRSAKSYLATPGSTVRGHYGSILYEGNTLVTFLYEKSKSGDITQG 1148
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+ VLE+RS D I
Sbjct: 1149 LPKVEHVLEVRSIDSI 1164
>gi|90403919|gb|ABD93853.1| RNA polymerase beta chain [Thottea borneensis]
Length = 752
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS Q+LIV ATPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 577 IKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 636
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS I
Sbjct: 637 LPKVEQVLEVRSIHSI 652
>gi|90403933|gb|ABD93860.1| RNA polymerase beta chain [Peumus boldus]
Length = 758
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPG+ H G L++G+ LVTFIYEK RS D+T+
Sbjct: 582 HIKSGQVLIVHVDSLVIRSAKPHLATPGSTVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 641
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 642 GLPKVEQVLEARSIDSI 658
>gi|428697163|ref|YP_007025347.1| RNA polymerase beta' subunit [Erodium jahandiezianum]
Length = 1422
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 45/76 (59%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIVQ ATPG HYG L +G LVTF+YEK RS D+T+
Sbjct: 1113 LKSGQVLIVQGGYRIIRSAKPYLATPGTTVHGHYGEILSEGGTLVTFLYEKSRSADITQG 1172
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1173 LPKVERVFEVRSMDSI 1188
>gi|90403869|gb|ABD93828.1| RNA polymerase beta chain [Austrobaileya scandens]
Length = 835
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS Q+LIV TPGA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 608 IKSGQVLIVHVDSLVMRSAKPHLVTPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 667
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 668 LPKVEQVLEVRSINSI 683
>gi|408899969|gb|AFU94780.1| RpoC2, partial (chloroplast) [Caloncoba echinata]
Length = 1630
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV A T GA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHADSVVLRSAKLYLVTRGATVQGHYGEILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSTDSI 1371
>gi|90403897|gb|ABD93842.1| RNA polymerase beta chain [Zostera capricorni]
Length = 765
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS Q+LIV ATPG HYG ++G+ LVTFIYEK RS D+T+
Sbjct: 576 IKSGQVLIVHVDSLVIRSAKPYLATPGTTVHGHYGEIFYEGDTLVTFIYEKSRSGDITQG 635
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 636 LPKVEQVLEVRSIDSI 651
>gi|90403937|gb|ABD93862.1| RNA polymerase beta chain [Gyrocarpus americanus]
Length = 712
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 46/77 (59%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA H G L +G+ LVTFIYEK RS D+T+
Sbjct: 536 HIKSGQVLIVHVDSLVIRLAKPHLATPGATVHGHCGEILSEGDTLVTFIYEKSRSGDITQ 595
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 596 GLPKVEQVLEARSIDSI 612
>gi|90111014|sp|Q2VEI6.1|RPOC2_SOLTU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|82754619|gb|ABB90033.1| RNA polymerase beta II chain [Solanum tuberosum]
Length = 1392
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q ++VQ ATPGA HYG L++GN LVTFIYEK S D+T+
Sbjct: 1090 LKSGQFILVQVDSIVIRSAKPYLATPGATVHGHYGETLNQGNTLVTFIYEKSISDDITQG 1149
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165
>gi|336239409|gb|AEI27562.1| RNA polymerase beta subunit [Filipendula vulgaris]
Length = 1254
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
+HLK Q+++VQ ATPG+ HYG L +G+ L+TFIYEK RS D+T
Sbjct: 1043 SHLKPGQVIVVQLDSLVIRSAQPYLATPGSTVHGHYGEILSEGDTLITFIYEKSRSGDIT 1102
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+Q+LE+RS I
Sbjct: 1103 QGLPKVEQILEVRSIHSI 1120
>gi|146261525|gb|ABQ15072.1| RNA polymerase beta' subunit [Myriophyllum sp. Broch s.n.]
Length = 805
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA +YG L++G+ L+TF+YEK +S D+T+
Sbjct: 635 HLKSGQVLIVQVDSIIIRSAKPYLATPGATVHGYYGKILYEGDTLITFLYEKSKSGDITQ 694
Query: 51 ALSKVKQVLEIRSFDLI 67
L K++QVLE RS + I
Sbjct: 695 GLPKIEQVLEARSINSI 711
>gi|90403895|gb|ABD93841.1| RNA polymerase beta chain [Hydrocleys nymphoides]
Length = 776
Score = 68.6 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H++S Q+LIV ATPG +YG L++G+ LVTF+YEK RS D+T+
Sbjct: 583 HIRSGQVLIVHVDSLVIRSAKPYLATPGTTIHGNYGGILYEGDTLVTFLYEKSRSGDITQ 642
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 643 GLPKVEQVLEVRSIDSI 659
>gi|90403831|gb|ABD93809.1| RNA polymerase beta chain [Alstroemeria sp. Qiu 96143]
Length = 831
Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI+I+ ATPGA HYG L +G LVTFIYEK RS D+T+ L
Sbjct: 605 KSGQIIIIHIDSLVIRLAKPYLATPGATVHGHYGGILSEGETLVTFIYEKSRSGDITQGL 664
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 665 PKVEQVLEVRSIDSI 679
>gi|355332699|gb|AER53376.1| RNA polymerase beta chain [Asclepias subulata]
Length = 1373
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1081 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIIYEGDTLVTFIYEKSRSGDITQ 1140
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1141 GLPKVEQVFEARSIDSI 1157
>gi|343482048|gb|AEM44886.1| RNA polymerase beta chain [Borago officinalis]
Length = 414
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA HYG L++G L TF YEK RS D+T+
Sbjct: 232 LKSGQVILVQVDSIVIRSAKPFLATPGATVHGHYGEILYEGETLATFFYEKSRSGDITQG 291
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 292 LPKVEQVLEVRSIDSI 307
>gi|156598411|gb|ABU85465.1| RNA polymerase beta subunit [Musa acuminata]
Length = 1359
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI+IV ATPGA HYG ++G+ LVTFIYEK RS D+T+ L
Sbjct: 1078 KSGQIIIVHVDSLVIRSAKPYLATPGATVHGHYGEIFYEGDTLVTFIYEKSRSGDITQGL 1137
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1138 PKVEQILEVRSIDSI 1152
>gi|456061441|ref|YP_007475609.1| RNA polymerase beta' subunit [Heliconia collinsiana]
gi|449326088|gb|AGE92674.1| RNA polymerase beta' subunit [Heliconia collinsiana]
Length = 1384
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI+IV ATPGA HYG ++G+ LVTFIYEK RS D+T+ L
Sbjct: 1078 KSGQIIIVHVDSLIIRSAKPYLATPGATVHGHYGEIFYEGDTLVTFIYEKSRSGDITQGL 1137
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1138 PKVEQILEVRSIDSI 1152
>gi|355332454|gb|AER53134.1| RNA polymerase beta chain [Asclepias subaphylla]
Length = 1370
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1078 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLVTFIYEKSRSGDITQ 1137
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1138 GLPKVEQVFEARSIDSI 1154
>gi|355331963|gb|AER52649.1| RNA polymerase beta chain [Asclepias cutleri]
Length = 1373
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1081 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLVTFIYEKSRSGDITQ 1140
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1141 GLPKVEQVFEARSIDSI 1157
>gi|428697518|ref|YP_007025802.1| RNA polymerase beta' subunit [Erodium moschatum]
Length = 1393
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 45/76 (59%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIVQ ATPG HYG L +G LVTF+YEK RS D+T+
Sbjct: 1104 LKSGQVLIVQVGDVIIRSAKPYLATPGTTLHGHYGEILSEGGTLVTFLYEKSRSADITQG 1163
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1164 LPKVERVFEVRSIDSI 1179
>gi|355331880|gb|AER52567.1| RNA polymerase beta chain [Asclepias coulteri]
Length = 1375
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1143 GLPKVEQVFEARSIDSI 1159
>gi|343482058|gb|AEM44891.1| RNA polymerase beta chain [Olinia emarginata]
Length = 393
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 40/53 (75%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
ATPGA HYG L++G+ LVTFIYEK RS D+T+ L KV+QVLE+RS D I
Sbjct: 232 ATPGATIHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSI 284
>gi|355332046|gb|AER52731.1| RNA polymerase beta chain [Asclepias cutleri]
Length = 1373
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1081 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLVTFIYEKSRSGDITQ 1140
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1141 GLPKVEQVFEARSIDSI 1157
>gi|355332616|gb|AER53294.1| RNA polymerase beta chain [Asclepias subulata]
Length = 1373
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1081 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLVTFIYEKSRSGDITQ 1140
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1141 GLPKVEQVFEARSIDSI 1157
>gi|355332211|gb|AER52894.1| RNA polymerase beta chain [Asclepias macrotis]
gi|355332292|gb|AER52974.1| RNA polymerase beta chain [Asclepias macrotis]
Length = 1375
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLVTFIYEKSRSGDITQ 1142
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1143 GLPKVEQVFEARSIDSI 1159
>gi|355332129|gb|AER52813.1| RNA polymerase beta chain [Asclepias leptopus]
Length = 1373
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1081 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLVTFIYEKSRSGDITQ 1140
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1141 GLPKVEQVFEARSIDSI 1157
>gi|355331714|gb|AER52403.1| RNA polymerase beta chain [Asclepias albicans]
Length = 1373
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1081 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLVTFIYEKSRSGDITQ 1140
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1141 GLPKVEQVFEARSIDSI 1157
>gi|355332537|gb|AER53216.1| RNA polymerase beta chain [Asclepias subaphylla]
gi|355332782|gb|AER53458.1| RNA polymerase beta chain [Asclepias albicans x Asclepias subulata]
Length = 1373
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1081 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLVTFIYEKSRSGDITQ 1140
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1141 GLPKVEQVFEARSIDSI 1157
>gi|355331797|gb|AER52485.1| RNA polymerase beta chain [Asclepias albicans]
Length = 1383
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1091 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLVTFIYEKSRSGDITQ 1150
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1151 GLPKVEQVFEARSIDSI 1167
>gi|326200271|gb|ADZ52310.1| RNA polymerase beta chain [Asclepias syriaca]
Length = 1373
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ LVTFIYEK RS D+T+
Sbjct: 1081 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLVTFIYEKSRSGDITQ 1140
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1141 GLPKVEQVFEARSIDSI 1157
>gi|90403743|gb|ABD93765.1| RNA polymerase beta chain [Hydrocharis morsus-ranae]
Length = 815
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 46/78 (58%), Gaps = 13/78 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS Q+LIV A TPG HYG +KG+ LVTF+YEK RS D+T+
Sbjct: 590 HRKSGQVLIVHADSLVIRSAKPYLVTPGTTVHGHYGEIFYKGDILVTFVYEKSRSGDITQ 649
Query: 51 ALSKVKQVLEIRSFDLIL 68
L KV+QVLE+RS + L
Sbjct: 650 GLPKVEQVLEVRSISMNL 667
>gi|374413227|gb|AEZ49485.1| RNA polymerase beta'' subunit, partial [Lilium superbum]
Length = 1379
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 39/53 (73%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
ATPGA HYG L++G LVTFIYEK RS D+T+ L KV+QVLE+RS D I
Sbjct: 1106 ATPGATVHGHYGEILYEGKTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSI 1158
>gi|408899989|gb|AFU94790.1| RpoC2, partial (chloroplast) [Galearia maingayi]
Length = 1630
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
+ LKS Q++IV ATP A HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 YXXLKSGQVIIVHVDSVVIRSAKPYLATPRATVHGHYGEILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|290489550|gb|ADD31159.1| RNA polymerase beta'' subunit protein [Rhododendron simsii]
Length = 1374
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ TPG HYG L++G+ L+TF+YEK RS D+T+
Sbjct: 1093 HLKSGQVLIVQVDSVIIRSAKPYLTTPGTTINGHYGEILYEGDTLLTFLYEKSRSSDITQ 1152
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+++ E+RS D I
Sbjct: 1153 GLPKVEKMFEVRSIDSI 1169
>gi|90403779|gb|ABD93783.1| RNA polymerase beta chain [Maranta leuconeura]
Length = 849
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPG+ HYG ++G+ LVTFIYEK RS D+T+ L
Sbjct: 623 KSGQILIVHVDSLVIRSAKPYLATPGSTIHGHYGKIFYEGDTLVTFIYEKSRSGDITQGL 682
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 683 PKVEQILEVRSIDSI 697
>gi|449326782|gb|AGE93360.1| RNA polymerase beta' subunit [Alpinia zerumbet]
Length = 1375
Score = 67.8 bits (164), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI+IV ATPGA HYG ++G+ LVTFIYEK RS D+T+ L
Sbjct: 1079 KSGQIIIVDVDALIIRSAKPYLATPGATIHGHYGKIFYEGDTLVTFIYEKSRSGDITQGL 1138
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1139 PKVEQILEVRSIDSI 1153
>gi|408899977|gb|AFU94784.1| RpoC2, partial (chloroplast) [Ctenolophon englerianus]
Length = 1630
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 47/79 (59%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV A PGA YG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHVDSVVIRSAKPYLAAPGATVHGRYGKTLYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QVLE+RS D I
Sbjct: 1353 TQGLPKVEQVLEVRSIDSI 1371
>gi|456061546|ref|YP_007475694.1| RNA polymerase beta' subunit [Zingiber spectabile]
gi|449326174|gb|AGE92759.1| RNA polymerase beta' subunit [Zingiber spectabile]
Length = 1380
Score = 67.8 bits (164), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI+IV ATPGA HYG ++G+ LVTFIYEK RS D+T+ L
Sbjct: 1079 KSGQIIIVDVDTLIIRSAKPYLATPGATIHGHYGKIFYEGDTLVTFIYEKSRSGDITQGL 1138
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1139 PKVEQILEVRSIDSI 1153
>gi|90403695|gb|ABD93741.1| RNA polymerase beta chain [Amborella trichopoda]
Length = 840
Score = 67.4 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS QI+IV AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 613 VKSGQIIIVHVDSLVIRLAKYHLATRGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 672
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 673 LPKVEQVLEVRSIDSI 688
>gi|374413189|gb|AEZ49469.1| RNA polymerase beta'' subunit [Albuca kirkii]
Length = 1386
Score = 67.4 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA + HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1085 KSGQILIVHIDSLIIRSAKPYLATPGATVYGHYGEALSEGDTLVTFIYEKSRSGDITQGL 1144
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1145 PKVEQILEVRSIGSI 1159
>gi|157690200|gb|ABV65787.1| RNA polymerase beta'' subunit, partial (chloroplast) [Urtica urens]
Length = 1275
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATP A HYG L +G+ LVTFIYEK RS D+T+
Sbjct: 1055 LKSGQVIMVQIASLVIRTAKSYLATPEATVHGHYGEILFEGDTLVTFIYEKSRSGDITQG 1114
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1115 LPKVEQVLEVRSIDSI 1130
>gi|90403833|gb|ABD93810.1| RNA polymerase beta chain [Doryphora sassafras]
Length = 759
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H+KS Q+LIV ATPGA H G L++G+ LVTFIYEK RS D+T+
Sbjct: 531 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQ 590
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE R D I
Sbjct: 591 GLPKVEQVLEARPIDSI 607
>gi|323148820|ref|YP_004221913.1| RNA polymerase beta' subunit [Erodium carvifolium]
gi|316926284|gb|ADU58137.1| RNA polymerase beta' subunit [Erodium carvifolium]
Length = 1393
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 45/76 (59%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIVQ ATPG HYG L +G LVTF+YEK RS D+T+
Sbjct: 1104 LKSGQVLIVQVGYVIIRSAKPYLATPGTTLHGHYGETLSEGGTLVTFLYEKSRSADITQG 1163
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1164 LPKVERVFEVRSIDSI 1179
>gi|90403799|gb|ABD93793.1| RNA polymerase beta chain [Aristolochia macrophylla]
Length = 832
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS Q++IV ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 605 IKSGQVIIVHVDSLVIRSAKPHLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQG 664
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS I
Sbjct: 665 LPKVEQVLEVRSIHSI 680
>gi|41017896|sp|P60289.1|RPOC2_AMBTC RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|34481619|emb|CAD45097.2| RNA polymerase beta' subunit-2 [Amborella trichopoda]
Length = 1373
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS QI+IV AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 VKSGQIIIVHVDSLVIRLAKYHLATRGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1138
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 LPKVEQVLEVRSIDSI 1154
>gi|126022811|ref|NP_904089.2| RNA polymerase beta'' subunit [Amborella trichopoda]
Length = 1369
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS QI+IV AT GA HYG L++G+ LVTFIYEK RS D+T+
Sbjct: 1075 VKSGQIIIVHVDSLVIRLAKYHLATRGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1134
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1135 LPKVEQVLEVRSIDSI 1150
>gi|157690104|gb|ABV65739.1| RNA polymerase beta'' subunit, partial (chloroplast) [Helianthemum
canum]
Length = 1279
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+ KS Q+LIVQ ATPGA HYG +++G VTF+YEK RS D+T+
Sbjct: 1055 YFKSGQVLIVQVDSVVIRSAKPFLATPGARVHGHYGELIYEGEAFVTFLYEKSRSSDITQ 1114
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV++V+E+RS D I
Sbjct: 1115 GLPKVEKVVEVRSIDSI 1131
>gi|359483692|ref|XP_003633003.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit
beta''-like [Vitis vinifera]
Length = 1045
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 48/78 (61%), Gaps = 13/78 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ A GAI HY L++ + LVTFIY+K RS D+T+
Sbjct: 772 HLKSGQVLIVQVDSVVIGSTKPYLAILGAIVHGHYEEILYEXDTLVTFIYKKSRSGDITQ 831
Query: 51 ALSKVKQVLEIRSFDLIL 68
L KVKQVLE+RS D IL
Sbjct: 832 GLPKVKQVLEVRSIDSIL 849
>gi|90403789|gb|ABD93788.1| RNA polymerase beta chain [Blandfordia grandiflora]
Length = 856
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA YG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 630 KSGQILIVHVDSLVIRSAKPYLATPGATVHGDYGETLYEGDTLVTFIYEKSRSGDITQGL 689
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 690 PKVEQILEVRSIDSI 704
>gi|355332371|gb|AER53052.1| RNA polymerase beta chain [Asclepias masonii]
Length = 1373
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++ VQA TPGA +YG +++G+ L+TFIYEK RS D+T+
Sbjct: 1081 HLKSGQVIFVQADSVVIRSAKPYLATPGATVHGNYGEIVYEGDTLLTFIYEKSRSGDITQ 1140
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QV E RS D I
Sbjct: 1141 GLPKVEQVFEARSIDSI 1157
>gi|309322136|ref|YP_003934051.1| RNA polymerase beta' subunit [Geranium palmatum]
gi|197131646|gb|ACH47341.1| RNA polymerase beta subunit [Geranium palmatum]
gi|300069229|gb|ADJ66350.1| RNA polymerase beta' subunit [Geranium palmatum]
Length = 1417
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+L+VQ ATPG HYG L++G LVTF YEK RS D+T+
Sbjct: 1112 LKSGQVLVVQGGYVIIRSAKPYLATPGTTLHGHYGEILYEGGTLVTFRYEKSRSADITQG 1171
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1172 LPKVERVFEVRSIDSI 1187
>gi|90403791|gb|ABD93789.1| RNA polymerase beta chain [Iris sp. Qiu 95091]
Length = 819
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 13/71 (18%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILI+ ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 593 KSGQILIIDIDSLVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGL 652
Query: 53 SKVKQVLEIRS 63
KV+Q+LE+RS
Sbjct: 653 PKVEQILEVRS 663
>gi|428697361|ref|YP_007025543.1| RNA polymerase beta' subunit [Erodium foetidum subsp.
cheilanthifolium]
Length = 1392
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 44/76 (57%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ IVQ ATPG HYG L +G LVTF+YEK RS D+T+
Sbjct: 1103 LKSGQVFIVQVGYVIIRSAKPYLATPGTTLHGHYGEILSEGGTLVTFLYEKSRSADITQG 1162
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1163 LPKVERVFEVRSIDSI 1178
>gi|413943011|gb|AFW75660.1| putative DNA-directed RNA polymerase beta' subunit family protein
[Zea mays]
Length = 1051
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 44/73 (60%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEKLRS D+T+ L
Sbjct: 771 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKLRSSDITQGL 830
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 831 PKVEQIFEARSID 843
>gi|428697434|ref|YP_007025706.1| RNA polymerase beta' subunit [California macrophylla]
Length = 1411
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 44/76 (57%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIV A TPG HYG L+ G LVTF+YEK RS D+T+
Sbjct: 1107 LKSGQVLIVHAGYVIIRSAKPYLATPGTTVHGHYGEILYGGGTLVTFLYEKSRSADITQG 1166
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1167 LPKVERVFEVRSIDSI 1182
>gi|90403765|gb|ABD93776.1| RNA polymerase beta chain [Croomia pauciflora]
Length = 849
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG ++ + LVTFIYEK RS D+T+ L
Sbjct: 623 KSGQILIVHLDSLVIRSAKPYLATPGATVHGHYGEIFYERDTLVTFIYEKSRSGDITQGL 682
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 683 PKVEQVLEVRSVDSI 697
>gi|395001665|ref|YP_006503682.1| RNA polymerase beta' subunit (chloroplast) [Erycina pusilla]
gi|339431294|gb|AEJ72488.1| RNA polymerase beta' subunit (chloroplast) [Erycina pusilla]
Length = 1385
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA RHYG +G+ L+TFIYEK RS D+T+ L
Sbjct: 1089 KSGQIFIVHIDSLVLRSAKPYLVTPGATIHRHYGETFSEGDTLITFIYEKSRSGDITQGL 1148
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1149 PKVEQILEVRSIDSI 1163
>gi|335352803|gb|AEH42624.1| RNA polymerase beta subunit [Podostemum ceratophyllum]
Length = 1151
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+KS Q++IV ATPGA +YG L+ G+ LVTF+YEK RS D+T+
Sbjct: 904 QIKSGQVIIVHLDSLVLRAAKPYLATPGATVHGNYGEILYDGDTLVTFLYEKSRSGDITQ 963
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 964 GLPKVEQVLEVRSIDSI 980
>gi|372482329|gb|AEX94811.1| RNA polymerase beta' subunit (chloroplast) [Crinum asiaticum]
Length = 1387
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1086 KSGQILIVHVDSLVIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1146 PKVEQILEVRSIGSI 1160
>gi|372482320|gb|AEX94807.1| RNA polymerase beta' subunit (chloroplast) [Allium fistulosum]
Length = 1381
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 14/79 (17%)
Query: 3 THLK-SDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
TH+K S QILIV ATPGA HYG L +G+ LVTFIYEK RS D+
Sbjct: 1076 THIKKSGQILIVHVDSLVIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDI 1135
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+Q+LE+RS I
Sbjct: 1136 TQGLPKVEQILEVRSIGSI 1154
>gi|90403901|gb|ABD93844.1| RNA polymerase beta chain [Agave attenuata]
Length = 761
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 544 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGDITQGL 603
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 604 PKVEQILEVRSIGSI 618
>gi|90403769|gb|ABD93778.1| RNA polymerase beta chain [Asparagus officinalis]
Length = 860
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 634 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGQTLSEGDTLVTFIYEKSRSGDITQGL 693
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 694 PKVEQILEVRSIGSI 708
>gi|90403817|gb|ABD93802.1| RNA polymerase beta chain [Beaucarnea recurvata]
Length = 830
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 611 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 670
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 671 PKVEQILEVRSIGSI 685
>gi|387315917|gb|AFJ73391.1| RNA polymerase beta subunit, partial (chloroplast) [Apostasia sp.
G244]
Length = 897
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 750 KSGQIFIVHVDSLVIRSAKLYLATPGATVHGHYGKTLYEGDTLVTFIYEKSRSGDITQGL 809
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS + I
Sbjct: 810 PKVEQILEVRSINSI 824
>gi|387569702|gb|AFJ80057.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
margaritaceum]
Length = 882
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 735 KSGQILIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 794
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 795 PKVEQILEVRSIDSI 809
>gi|372482390|gb|AEX94840.1| RNA polymerase beta' subunit (chloroplast) [Dichelostemma congestum]
gi|372482392|gb|AEX94841.1| RNA polymerase beta' subunit (chloroplast) [Dichelostemma ida-maia]
Length = 1382
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1081 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1141 PKVEQILEVRSIGSI 1155
>gi|372482386|gb|AEX94838.1| RNA polymerase beta' subunit (chloroplast) [Brodiaea californica]
Length = 1382
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1081 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1141 PKVEQILEVRSIGSI 1155
>gi|372482380|gb|AEX94835.1| RNA polymerase beta' subunit (chloroplast) [Sansevieria trifasciata]
Length = 1384
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1083 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1142
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1143 PKVEQILEVRSIGSI 1157
>gi|387569686|gb|AFJ80049.1| RNA polymerase beta subunit, partial (chloroplast) [Paphiopedilum
vietnamense]
Length = 882
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG L++G+ L+TFIYEK RS D+T+ L
Sbjct: 735 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETLYEGDTLITFIYEKSRSGDITQGL 794
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 795 PKVEQILEVRSIDSI 809
>gi|387315907|gb|AFJ73386.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
bardolphianum]
Length = 882
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 735 KSGQILIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 794
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 795 PKVEQILEVRSIDSI 809
>gi|372482376|gb|AEX94833.1| RNA polymerase beta' subunit (chloroplast) [Ophiopogon japonicus]
Length = 1381
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1082 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1141
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1142 PKVEQILEVRSIGSI 1156
>gi|157690158|gb|ABV65766.1| RNA polymerase beta'' subunit (chloroplast) [Plumbago auriculata]
Length = 1370
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LK+ Q+LI+Q ATP A HYG +++G+ LVTF+YEK RS D+T+
Sbjct: 1075 LKAGQVLIIQVDSVVIRSAKPYLATPAATVHGHYGEIIYEGDTLVTFLYEKSRSRDITQG 1134
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 1135 LPKVEQVLEVRSIESI 1150
>gi|157690038|gb|ABV65706.1| RNA polymerase beta'' subunit, partial (chloroplast) [Aphloia
theiformis]
Length = 1273
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ TPGA HYG + G+ LVTFIYEK S D+T+
Sbjct: 1060 HLKSGQVLIVQVDSVVIRLAKPYLVTPGATVHGHYGEICYGGDTLVTFIYEKSTSSDITQ 1119
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV++ E+RS D I
Sbjct: 1120 GLPKVERAFEVRSLDSI 1136
>gi|374413256|gb|AEZ49498.1| RNA polymerase beta'' subunit [Syngonanthus chrysanthus]
Length = 1270
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI I+ A TPG+ H G FL+KGN LVTF YEK RS D+T+ L
Sbjct: 1017 KSGQICIINADSLVIRSAKPYLVTPGSTVHGHCGNFLYKGNTLVTFTYEKSRSGDITQGL 1076
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1077 PKVEQILEVRSIDSI 1091
>gi|387569708|gb|AFJ80060.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
debile]
Length = 882
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 735 KSGQILIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 794
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 795 PKVEQILEVRSIDSI 809
>gi|374413217|gb|AEZ49481.1| RNA polymerase beta'' subunit, partial [Hesperaloe parviflora]
Length = 1384
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1083 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGDITQGL 1142
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1143 PKVEQILEVRSIGSI 1157
>gi|90403777|gb|ABD93782.1| RNA polymerase beta chain [Strelitzia reginae]
Length = 853
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI+IV ATPG HYG ++G+ LVTFIYEK RS D+T+ L
Sbjct: 627 KSGQIIIVHVNSLVIRSAKPYLATPGTTVHGHYGEIFYEGDTLVTFIYEKSRSGDITQGL 686
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 687 PKVEQILEVRSTDSI 701
>gi|69216863|gb|AAZ03984.1| RNA polymerase beta'' chain [Yucca schidigera]
Length = 1384
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1083 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGDITQGL 1142
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1143 PKVEQILEVRSIGSI 1157
>gi|408900025|gb|AFU94808.1| RpoC2, partial (chloroplast) [Podostemum ceratophyllum]
Length = 1630
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS Q++IV ATPGA +YG L+ G+ LVTF+YEK RS D+T+
Sbjct: 1296 IKSGQVIIVHLDSLVLRAAKPYLATPGATVHGNYGEILYDGDTLVTFLYEKSRSGDITQG 1355
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1356 LPKVEQVLEVRSIDSI 1371
>gi|387569684|gb|AFJ80048.1| RNA polymerase beta subunit, partial (chloroplast) [Paphiopedilum
delenatii]
Length = 882
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG L++G+ L+TFIYEK RS D+T+ L
Sbjct: 735 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETLYEGDTLITFIYEKSRSGDITQGL 794
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 795 PKVEQILEVRSIDSI 809
>gi|372482318|gb|AEX94806.1| RNA polymerase beta' subunit (chloroplast) [Polianthes sp. Pires
2011-05]
Length = 1384
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1083 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGDITQGL 1142
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1143 PKVEQILEVRSIGSI 1157
>gi|372482316|gb|AEX94805.1| RNA polymerase beta' subunit (chloroplast) [Manfreda virginica]
Length = 1384
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1083 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGDITQGL 1142
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1143 PKVEQILEVRSIGSI 1157
>gi|372482310|gb|AEX94802.1| RNA polymerase beta' subunit (chloroplast) [Camassia scilloides]
Length = 1385
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1084 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGDITQGL 1143
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1144 PKVEQILEVRSIGSI 1158
>gi|372482378|gb|AEX94834.1| RNA polymerase beta' subunit (chloroplast) [Ruscus aculeatus]
Length = 1387
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1086 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1146 PKVEQILEVRSIGSI 1160
>gi|372482374|gb|AEX94832.1| RNA polymerase beta' subunit (chloroplast) [Liriope spicata]
Length = 1385
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1086 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1146 PKVEQILEVRSIGSI 1160
>gi|372482370|gb|AEX94830.1| RNA polymerase beta' subunit (chloroplast) [Dasylirion wheeleri]
Length = 1385
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1086 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1146 PKVEQILEVRSIGSI 1160
>gi|372482368|gb|AEX94829.1| RNA polymerase beta' subunit (chloroplast) [Calibanus hookerii]
Length = 1385
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1086 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1146 PKVEQILEVRSIGSI 1160
>gi|323690379|gb|ADX99122.1| RNA polymerase beta II subunit [Casselia glaziovii]
Length = 673
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 13/73 (17%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HL+S Q+++VQ A PGA HYG + +G+ L++FIYEK RS D+T+
Sbjct: 416 HLQSGQVILVQVDSVVIRSAKPYLAIPGATVHGHYGEIISQGDTLISFIYEKSRSGDITQ 475
Query: 51 ALSKVKQVLEIRS 63
L KV+QVLE+RS
Sbjct: 476 GLPKVEQVLEVRS 488
>gi|11466779|ref|NP_039375.1| RNA polymerase beta'' chain [Oryza sativa Japonica Group]
gi|11973|emb|CAA33988.1| RNA polymerase beta' subunit-2 [Oryza sativa Japonica Group]
Length = 1513
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1212 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGL 1271
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1272 PKVEQIFEARSID 1284
>gi|374249612|ref|YP_005089139.1| rpoC2 gene product [Rhynchoryza subulata]
gi|346228464|gb|AEO21336.1| RNA polymerase beta' subunit-2 [Rhynchoryza subulata]
Length = 1525
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1219 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGL 1278
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1279 PKVEQIFEARSID 1291
>gi|148839642|sp|P0C507.1|RPOC2_ORYSA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|148839644|sp|P0C509.1|RPOC2_ORYSJ RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
Length = 1513
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1212 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGL 1271
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1272 PKVEQIFEARSID 1284
>gi|378758407|ref|YP_005296411.1| rpoC2 gene product (chloroplast) [Oryza meridionalis]
gi|336326831|gb|AEI53009.1| RNA polymerase beta' subunit (chloroplast) [Oryza meridionalis]
Length = 1513
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1212 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGL 1271
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1272 PKVEQIFEARSID 1284
>gi|297722897|ref|NP_001173812.1| Os04g0240100 [Oryza sativa Japonica Group]
gi|255675248|dbj|BAH92540.1| Os04g0240100, partial [Oryza sativa Japonica Group]
Length = 1199
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 898 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGL 957
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 958 PKVEQIFEARSID 970
>gi|372482314|gb|AEX94804.1| RNA polymerase beta' subunit (chloroplast) [Hosta ventricosa]
Length = 1384
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1083 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFEGDTLVTFIYEKSRSGDITQGL 1142
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1143 PKVEQILEVRSIGSI 1157
>gi|372482388|gb|AEX94839.1| RNA polymerase beta' subunit (chloroplast) [Dichelostemma capitatum]
Length = 1382
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1081 KSGQILIVHVDSLIIRSAKPYLATPGATLHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1141 PKVEQILEVRSIGSI 1155
>gi|50233963|ref|YP_052741.1| RNA polymerase beta' subunit-2 [Oryza nivara]
gi|68053292|sp|Q6ENI2.1|RPOC2_ORYNI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|49614987|dbj|BAD26770.1| RNA polymerase beta' subunit-2 [Oryza nivara]
Length = 1513
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1212 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGL 1271
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1272 PKVEQIFEARSID 1284
>gi|218184366|gb|EEC66793.1| hypothetical protein OsI_33194 [Oryza sativa Indica Group]
Length = 344
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 43 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGL 102
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 103 PKVEQIFEARSID 115
>gi|109156589|ref|YP_654208.1| RNA polymerase beta'' chain [Oryza sativa Indica Group]
gi|148839643|sp|P0C508.1|RPOC2_ORYSI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|42795481|gb|AAS46048.1| RNA polymerase beta'' chain [Oryza sativa Indica Group]
gi|353685122|gb|AER12887.1| RNA polymerase beta II subunit (chloroplast) [Oryza sativa Indica
Group]
gi|353685210|gb|AER12974.1| RNA polymerse beta II subunit (chloroplast) [Oryza sativa Indica
Group]
Length = 1513
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1212 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGL 1271
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1272 PKVEQIFEARSID 1284
>gi|374413220|gb|AEZ49482.1| RNA polymerase beta'' subunit, partial [Iris virginica]
Length = 1358
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 13/71 (18%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILI+ ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1079 KSGQILIIDIYSLVIRSAKPYLATPGATVRGHYGETLYEGDTLVTFIYEKSRSGDITQGL 1138
Query: 53 SKVKQVLEIRS 63
KV+Q+LE+RS
Sbjct: 1139 PKVEQILEVRS 1149
>gi|372482308|gb|AEX94801.1| RNA polymerase beta' subunit (chloroplast) [Anemarrhena
asphodeloides]
Length = 1384
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1083 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1142
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1143 PKVEQILEVRSIGSI 1157
>gi|372482335|gb|AEX94814.1| RNA polymerase beta' subunit (chloroplast) [Aphyllanthes
monspeliensis]
Length = 1387
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1086 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGKTLSEGDTLVTFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1146 PKVEQILEVRSIGSI 1160
>gi|374413238|gb|AEZ49490.1| RNA polymerase beta'' subunit, partial [Nolina atopocarpa]
Length = 1385
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1086 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1146 PKVEQILEVRSIGSI 1160
>gi|372482339|gb|AEX94816.1| RNA polymerase beta' subunit (chloroplast) [Asparagus asparagoides]
Length = 1389
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1088 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGQTLSEGDTLVTFIYEKSRSGDITQGL 1147
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1148 PKVEQILEVRSIGSI 1162
>gi|372482337|gb|AEX94815.1| RNA polymerase beta' subunit (chloroplast) [Asparagus officinalis]
gi|374413193|gb|AEZ49471.1| RNA polymerase beta'' subunit, partial [Asparagus officinalis]
Length = 1389
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1088 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGQTLSEGDTLVTFIYEKSRSGDITQGL 1147
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1148 PKVEQILEVRSIGSI 1162
>gi|372482355|gb|AEX94823.1| RNA polymerase beta' subunit (chloroplast) [Drimia altissima]
Length = 1386
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1085 KSGQILIVHIDSLIIRSAKPYLATPGATVHGHYGEALSEGDTLVTFIYEKSRSGDITQGL 1144
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1145 PKVEQILEVRSIGSI 1159
>gi|374413187|gb|AEZ49468.1| RNA polymerase beta'' subunit [Agapanthus praecox]
Length = 1370
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1083 KSGQILIVHLNSLVIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1142
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1143 PKVEQILEVRSIGSI 1157
>gi|449326608|gb|AGE93188.1| RNA polymerase beta' subunit [Calectasia narragara]
Length = 1381
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HY L++G+ L TFIYEK RS D+T+ L
Sbjct: 1080 KSGQILIVHVDSLVIRSAKPYLATPGATVHGHYREILYEGDTLATFIYEKSRSGDITQGL 1139
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1140 PKVEQILEVRSIDSI 1154
>gi|372482398|gb|AEX94844.1| RNA polymerase beta' subunit (chloroplast) [Xeronema callistemon]
Length = 1382
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 44/70 (62%), Gaps = 13/70 (18%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1081 KSGQILIVHVDSLVIRSAKPYLATPGATVHGHYGKTLYEGDTLVTFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIR 62
KV+Q+LE+R
Sbjct: 1141 PKVEQILEVR 1150
>gi|372482372|gb|AEX94831.1| RNA polymerase beta' subunit (chloroplast) [Eriospermum cervicorne]
Length = 1385
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1084 KSGQILIVHVDSLIIRLAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1143
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1144 PKVEQILEVRSIGSI 1158
>gi|372482357|gb|AEX94824.1| RNA polymerase beta' subunit (chloroplast) [Ledebouria cordifolia]
Length = 1382
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1081 KSGQILIVHIDSLIIRSAKLYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1141 PKVEQILEVRSIGSI 1155
>gi|339906444|ref|YP_004733237.1| RNA polymerase beta'' subunit [Indocalamus longiauritus]
gi|309321777|gb|ADO65300.1| RNA polymerase beta'' subunit [Indocalamus longiauritus]
Length = 1539
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1236 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1295
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1296 PKVEQIFEARSID 1308
>gi|255961375|ref|YP_003097568.1| RNA polymerase beta subunit [Dendrocalamus latiflorus]
gi|255040252|gb|ACT99912.1| RNA polymerase beta subunit [Dendrocalamus latiflorus]
Length = 1519
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1216 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1275
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1276 PKVEQIFEARSID 1288
>gi|372482362|gb|AEX94826.1| RNA polymerase beta' subunit (chloroplast) [Iris tenax]
Length = 1377
Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILI+ ATPGA HYG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1076 KSGQILIIDIDSLVIRSAKPYLATPGATVRGHYGETLYEGDTLVTFIYEKSRSGDITQGL 1135
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1136 PKVEQILEVRSIGSI 1150
>gi|372482331|gb|AEX94812.1| RNA polymerase beta' subunit (chloroplast) [Eucharis x grandiflora]
Length = 1343
Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1042 KSGQILIVHVDSLVIRSAKPYLATPGATVHGHYGEPLSEGDTLVTFIYEKSRSGDITQGL 1101
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1102 PKVEQILEVRSIGSI 1116
>gi|340034443|ref|YP_004734094.1| RNA polymerase beta' subunit [Bambusa emeiensis]
gi|309321946|gb|ADO65467.1| RNA polymerase beta' subunit [Bambusa emeiensis]
Length = 1535
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1232 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1291
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1292 PKVEQIFEARSID 1304
>gi|253729549|ref|YP_003029732.1| RpoC2 [Bambusa oldhamii]
gi|246367059|gb|ACS94670.1| RpoC2 [Bambusa oldhamii]
Length = 1520
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1217 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1276
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1277 PKVEQIFEARSID 1289
>gi|340034190|ref|YP_004733753.1| RNA polymerase beta' subunit [Acidosasa purpurea]
gi|309321610|gb|ADO65135.1| RNA polymerase beta' subunit [Acidosasa purpurea]
Length = 1524
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1221 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1280
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1281 PKVEQIFEARSID 1293
>gi|452849475|ref|YP_007475132.1| RNA polymerase beta'' subunit (chloroplast) [Arundinaria gigantea]
gi|308196280|gb|ADO17487.1| RNA polymerase beta'' subunit [Arundinaria gigantea]
gi|441480243|gb|AGC38155.1| RNA polymerase beta'' subunit (chloroplast) [Arundinaria gigantea]
Length = 1517
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1214 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1273
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1274 PKVEQIFEARSID 1286
>gi|340034019|ref|YP_004733571.1| RNA polymerase beta' subunit [Phyllostachys edulis]
gi|340034358|ref|YP_004733971.1| RNA polymerase beta' subunit [Phyllostachys nigra var. henonis]
gi|374249343|ref|YP_005088525.1| rpoC2 gene product (chloroplast) [Phyllostachys propinqua]
gi|307133879|gb|ADN32884.1| RNA polymerase beta' subunit [Phyllostachys nigra var. henonis]
gi|309321861|gb|ADO65383.1| RNA polymerase beta' subunit [Phyllostachys edulis]
gi|346228380|gb|AEO21253.1| RNA polymerase beta' subunit-2 (chloroplast) [Phyllostachys
propinqua]
Length = 1517
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1214 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1273
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1274 PKVEQIFEARSID 1286
>gi|372482327|gb|AEX94810.1| RNA polymerase beta' subunit (chloroplast) [Amaryllis belladonna]
Length = 1387
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1086 KSGQILIVHVDSLVIRSAKPYLATPGATVHGHYGEPLSEGDTLVTFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1146 PKVEQILEVRSIGSI 1160
>gi|374249259|ref|YP_005088002.1| rpoC2 gene product [Leersia tisserantii]
gi|346228296|gb|AEO21170.1| RNA polymerase beta' subunit-2 [Leersia tisserantii]
Length = 1492
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 40/57 (70%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLILACL 71
AT GA HYG L+KG++LVTFIYEK RS D+T+ L KV+Q+ E RS D + A L
Sbjct: 1213 ATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGLPKVEQIFEARSIDSLSANL 1269
>gi|372482325|gb|AEX94809.1| RNA polymerase beta' subunit (chloroplast) [Tulbaghia violacea]
Length = 1383
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 47/79 (59%), Gaps = 14/79 (17%)
Query: 3 THLK-SDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
TH+K S QI IV ATPGA HYG L +G+ LVTFIYEK RS D+
Sbjct: 1078 THIKKSGQIFIVHVDSLVIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDI 1137
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+Q+LE+RS I
Sbjct: 1138 TQGLPKVEQILEVRSIGSI 1156
>gi|374413202|gb|AEZ49475.1| RNA polymerase beta'' subunit, partial [Chlorophytum rhizopendulum]
Length = 1376
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV A PGA RHYG L +G+ L TFIYEK RS D+T+ L
Sbjct: 1075 KSGQILIVHADSVIIRSAKPYLAIPGATVHRHYGETLFEGDTLATFIYEKSRSGDITQGL 1134
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1135 PKVEQILEVRSIGSI 1149
>gi|90403807|gb|ABD93797.1| RNA polymerase beta chain [Lomandra obliqua]
Length = 862
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 14/78 (17%)
Query: 4 HLK-SDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
H+K S QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T
Sbjct: 633 HIKNSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDIT 692
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+Q+LE+RS I
Sbjct: 693 QGLPKVEQILEVRSIGSI 710
>gi|372482312|gb|AEX94803.1| RNA polymerase beta' subunit (chloroplast) [Echeandia sp. Steele
1101]
Length = 1380
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV A PGA RHYG L +G+ L TFIYEK RS D+T+ L
Sbjct: 1079 KSGQILIVHADSVIIRSAKPYLAIPGATVHRHYGETLFEGDTLATFIYEKSRSGDITQGL 1138
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1139 PKVEQILEVRSIGSI 1153
>gi|372482360|gb|AEX94825.1| RNA polymerase beta' subunit (chloroplast) [Oziroe biflora]
Length = 1386
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1085 KSGQILIVHIGSLIIRSAKPYLATPGATVHGHYGETLSEGDILVTFIYEKSRSGDITQGL 1144
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1145 PKVEQILEVRSIGSI 1159
>gi|387315911|gb|AFJ73388.1| RNA polymerase beta subunit, partial (chloroplast) [Vanilla sp.
G241]
Length = 887
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG KG+ L+TFIYEK RS D+T+ L
Sbjct: 740 KSGQIFIVHVHDFVIRSAKPYFVTPGATVHGHYGETFDKGDTLITFIYEKSRSGDITQGL 799
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 800 PKVEQILEVRSIDSI 814
>gi|414885666|tpg|DAA61680.1| TPA: putative DNA-directed RNA polymerase beta' subunit family
protein [Zea mays]
Length = 558
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 291 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 350
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 351 PKVEQIFEARSID 363
>gi|374413235|gb|AEZ49489.1| RNA polymerase beta'' subunit, partial [Neoastelia spectabilis]
Length = 1385
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV ATPGA YG L++G+ LVTFIYEK RS D+T+ L
Sbjct: 1084 KSGQIFIVHVDSLVIRSAKPYLATPGATVHGDYGETLYEGDTLVTFIYEKSRSGDITQGL 1143
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1144 PKVEQILEVRSIDSI 1158
>gi|340034529|ref|YP_004734178.1| RNA polymerase beta' subunit [Ferrocalamus rimosivaginus]
gi|309321694|gb|ADO65218.1| RNA polymerase beta' subunit [Ferrocalamus rimosivaginus]
Length = 1409
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1106 KSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1165
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1166 PKVEQIFEARSID 1178
>gi|288563353|gb|ADC53595.1| RNA polymerase beta'' subunit [Pharus latifolius]
Length = 1455
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1192 KSGQIFIVNIDSFVIRSAKPYLATTGATVHGHYGETLYKGDRLVTFIYEKSRSSDITQGL 1251
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1252 PKVEQIFEARSID 1264
>gi|374413229|gb|AEZ49486.1| RNA polymerase beta'' subunit [Lomandra longifolia]
Length = 1370
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 14/78 (17%)
Query: 4 HLK-SDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
H+K S QILIV ATPGA HYG L +G+ LVTFIYEK RS D+T
Sbjct: 1081 HIKNSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDIT 1140
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV+Q+LE+RS I
Sbjct: 1141 QGLPKVEQILEVRSIGSI 1158
>gi|157690090|gb|ABV65732.1| RNA polymerase beta'' subunit, partial (chloroplast) [Elatine
triandra]
Length = 692
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
LKS Q++IV TPGA HYG L G+ LVTFIYEK RS D+T+
Sbjct: 464 QLKSGQVIIVHVDSVVIRLAKPYLVTPGATVHGHYGEILSAGDTLVTFIYEKSRSGDITQ 523
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 524 GLPKVEKVFEVRSIDSI 540
>gi|387315901|gb|AFJ73383.1| RNA polymerase beta subunit, partial (chloroplast) [Selenipedium
aequinoctiale]
Length = 880
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 733 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 792
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 793 PKVEQILEVRSIDSI 807
>gi|372482382|gb|AEX94836.1| RNA polymerase beta' subunit (chloroplast) [Maianthemum stellatum]
Length = 1385
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI+IV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1086 KSGQIIIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1146 PKVEQILEVRSIGSI 1160
>gi|372482366|gb|AEX94828.1| RNA polymerase beta' subunit (chloroplast) [Trichopetalum plumosum]
Length = 1371
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTF+YEK RS D+T+ L
Sbjct: 1082 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLFQGDTLVTFLYEKSRSGDITQGL 1141
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1142 PKVEQILEVRSIGSI 1156
>gi|90403793|gb|ABD93790.1| RNA polymerase beta chain [Allium cepa]
Length = 852
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 14/75 (18%)
Query: 3 THLK-SDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
TH+K S QILIV ATPGA HYG L +G+ LVTFIYEK RS D+
Sbjct: 627 THIKKSGQILIVHVDCLVIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDI 686
Query: 49 TRALSKVKQVLEIRS 63
+ L KV+Q+LE+RS
Sbjct: 687 SAGLPKVEQILEVRS 701
>gi|374413191|gb|AEZ49470.1| RNA polymerase beta'' subunit, partial [Apostasia wallichii]
Length = 1371
Score = 65.1 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV ATPGA HYG ++G+ LVTFIYEK RS D+T+ L
Sbjct: 1076 KSGQIFIVHVDSLVIRSAKLYLATPGATVHGHYGKTFYEGDTLVTFIYEKSRSGDITQGL 1135
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS + I
Sbjct: 1136 PKVEQILEVRSINSI 1150
>gi|218176237|ref|YP_002364494.1| RNA polymerase beta' subunit [Festuca arundinacea]
gi|215882321|gb|ACJ70751.1| RNA polymerase beta' subunit [Festuca arundinacea]
Length = 1504
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1214 KSGQIFIVNMDSFVLRTAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1273
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1274 PKVEQIFEARSID 1286
>gi|337730934|gb|AEI70811.1| DNA-directed RNA polymerase beta'' subunit [Puelia olyriformis]
Length = 1507
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1204 KSGQIFIVNIDSFVLRTAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1263
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1264 PKVEQIFEARSID 1276
>gi|308742587|gb|ADO33438.1| RNA polymerase beta' subunit [Smilax china]
Length = 1387
Score = 65.1 bits (157), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA H G ++G L+TFIYEK RS D+T+ L
Sbjct: 1086 KSGQILIVHVDSLVIRSAKPYLATPGATVHGHCGKIFYEGETLITFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 1146 PKVEQVLEVRSIDSI 1160
>gi|387569714|gb|AFJ80063.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
molle]
Length = 882
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 735 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 794
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 795 PKVEQILEVRSIDSI 809
>gi|90403773|gb|ABD93780.1| RNA polymerase beta chain [Smilax sp. Qiu 95117]
Length = 856
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA H G ++G L+TFIYEK RS D+T+ L
Sbjct: 630 KSGQILIVHVDSLVIRSAKPYLATPGATVHGHCGKIFYEGETLITFIYEKSRSGDITQGL 689
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 690 PKVEQVLEVRSIDSI 704
>gi|387569706|gb|AFJ80059.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
acaule]
Length = 882
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 735 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 794
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 795 PKVEQILEVRSIDSI 809
>gi|387569692|gb|AFJ80052.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
tibeticum]
Length = 886
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 739 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 798
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 799 PKVEQILEVRSIDSI 813
>gi|387569712|gb|AFJ80062.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
irapeanum]
Length = 882
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 735 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 794
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 795 PKVEQILEVRSIDSI 809
>gi|387569700|gb|AFJ80056.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
californicum]
Length = 884
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 737 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 796
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 797 PKVEQILEVRSIDSI 811
>gi|387569696|gb|AFJ80054.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
candidum]
Length = 886
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 739 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 798
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 799 PKVEQILEVRSIDSI 813
>gi|387569694|gb|AFJ80053.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
farreri]
Length = 886
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 739 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 798
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 799 PKVEQILEVRSIDSI 813
>gi|387315905|gb|AFJ73385.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
japonicum]
Length = 884
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 737 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 796
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 797 PKVEQILEVRSIDSI 811
>gi|323690381|gb|ADX99123.1| RNA polymerase beta II subunit [Tamonea boxiana]
Length = 695
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATP + HYG L++G+ L+TF+YEK RS D+T+
Sbjct: 437 LKSGQVILVQVDSVVIRSAKPYLATPRSTVQGHYGEILYQGDTLITFLYEKARSADITQG 496
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++VLE RS D I
Sbjct: 497 LPKVERVLEARSIDSI 512
>gi|387315909|gb|AFJ73387.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
fasciculatum]
Length = 882
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 735 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 794
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 795 PKVEQILEVRSIDSI 809
>gi|118430294|ref|YP_874728.1| RNA polymerase beta'' subunit [Agrostis stolonifera]
gi|125987656|sp|A1EA00.1|RPOC2_AGRST RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|118201203|gb|ABK79572.1| RNA polymerase beta'' subunit [Agrostis stolonifera]
Length = 1466
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1163 KSGQIFIVNMDSFVIRAAKPYLATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1222
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1223 PKVEQIFEARSID 1235
>gi|387569710|gb|AFJ80061.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
subtropicum]
Length = 882
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 735 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 794
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 795 PKVEQILEVRSIDSI 809
>gi|14017564|ref|NP_114251.1| RNA polymerase beta'' chain [Triticum aestivum]
gi|15214266|sp|Q9XPS9.1|RPOC2_WHEAT RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|4958869|dbj|BAA78042.1| RNA polymerase subunit beta [Triticum aestivum]
gi|13928197|dbj|BAB47026.1| RNA polymerase beta' subunit-2 [Triticum aestivum]
Length = 1479
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1187 KSGQIFIVNMNSFVIRAAKPYLATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1246
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1247 PKVEQIFEARSID 1259
>gi|157690114|gb|ABV65744.1| RNA polymerase beta'' subunit, partial (chloroplast) [Hypericum
kalmianum]
Length = 1289
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IV ATPG HYG L++G+ L+TF+YEK RS D+T
Sbjct: 1062 LKSGQVIIVHLDSVVLRSAQPYLATPGTTVHGHYGKILYEGDTLITFLYEKARSGDITHG 1121
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QV+E+RS I
Sbjct: 1122 LQKVEQVVEVRSIKKI 1137
>gi|372482384|gb|AEX94837.1| RNA polymerase beta' subunit (chloroplast) [Androstephium coeruleum]
Length = 1382
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HYG L +G+ LVTFIY+K RS D+T+ L
Sbjct: 1081 KSGQILIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYDKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1141 PKVEQILEVRSIGSI 1155
>gi|90403701|gb|ABD93744.1| RNA polymerase beta chain [Cananga odorata]
Length = 807
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS Q+LIV AT GA HYG L++G+ LV+F+YEK RS D+T+
Sbjct: 579 HRKSGQVLIVHVDYLVIRYAKPHLATRGATIHGHYGEILYEGDTLVSFLYEKSRSGDITQ 638
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 639 GLPKVEQVLEVRSIESI 655
>gi|374413225|gb|AEZ49484.1| RNA polymerase beta'' subunit, partial [Kingia australis]
Length = 720
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HY L++G+ L TF+YEK RS D+T+ L
Sbjct: 420 KSGQILIVYVDSLVIRSAKPYLATPGATVHGHYREILYEGDTLATFLYEKSRSGDITQGL 479
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 480 PKVEQILEVRSIDSI 494
>gi|260677412|ref|YP_003208180.1| RNA polymerase beta'' subunit [Coix lacryma-jobi]
gi|209361350|gb|ACI43265.1| RNA polymerase beta'' subunit [Coix lacryma-jobi]
Length = 1520
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1217 KSGQIFIVNIDSFVLRTAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1276
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1277 PKVEQIFEARSID 1289
>gi|90111011|sp|Q3BAQ2.1|RPOC2_PHAAO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|58802773|gb|AAW82493.1| RNA polymerase beta'' chain [Phalaenopsis aphrodite subsp. formosana]
Length = 1388
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 1089 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 1148
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1149 PKVEQILEVRSIDSI 1163
>gi|126165913|ref|YP_358566.2| RNA polymerase beta'' subunit [Phalaenopsis aphrodite subsp.
formosana]
Length = 1384
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 1085 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 1144
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1145 PKVEQILEVRSIDSI 1159
>gi|48478765|ref|YP_024373.1| RNA polymerase beta'' chain [Saccharum hybrid cultivar SP-80-3280]
gi|50812520|ref|YP_054623.1| RNA polymerase beta'' subunit [Saccharum hybrid cultivar NCo 310]
gi|68053294|sp|Q6ENX1.1|RPOC2_SACOF RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|48478667|gb|AAT44687.1| RNA polymerase beta'' chain [Saccharum hybrid cultivar SP80-3280]
gi|49659504|dbj|BAD27285.1| RNA polymerase beta subunit [Saccharum hybrid cultivar NCo 310]
Length = 1534
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1231 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1290
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1291 PKVEQIFEARSID 1303
>gi|319412398|gb|ADV41933.1| RNA polymerase beta' subunit (chloroplast) [Panicum virgatum]
Length = 1517
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1225 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1284
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1285 PKVEQIFEARSID 1297
>gi|345895209|ref|YP_004841941.1| RNA polymerase beta subunit [Panicum virgatum]
gi|319412311|gb|ADV41847.1| RNA polymerase beta subunit (chloroplast) [Panicum virgatum]
Length = 1524
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1232 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1291
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1292 PKVEQIFEARSID 1304
>gi|194477484|gb|ACF74835.1| RNA polymerase beta' subunit [Chasmanthium latifolium]
gi|307697299|gb|ADN86104.1| DNA-directed RNA polymerase beta'' subunit [Chasmanthium latifolium]
Length = 1512
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1209 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1268
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1269 PKVEQIFEARSID 1281
>gi|118614484|ref|YP_899399.1| RNA polymerase beta' subunit [Sorghum bicolor]
gi|242057459|ref|XP_002457875.1| hypothetical protein SORBIDRAFT_03g017630 [Sorghum bicolor]
gi|126302598|sp|Q01923.2|RPOC2_SORBI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|118201118|gb|ABK79488.1| RNA polymerase beta' subunit [Sorghum bicolor]
gi|241929850|gb|EES02995.1| hypothetical protein SORBIDRAFT_03g017630 [Sorghum bicolor]
Length = 1520
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1217 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1276
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1277 PKVEQIFEARSID 1289
>gi|92090948|sp|Q6L3A5.2|RPOC2_SACHY RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
Length = 1534
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1231 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1290
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1291 PKVEQIFEARSID 1303
>gi|295065720|ref|YP_003587660.1| RNA polymerase beta'' subunit [Anomochloa marantoidea]
gi|251765244|gb|ACT15398.1| RNA polymerase beta'' subunit [Anomochloa marantoidea]
Length = 1469
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFD 65
AT GA HYG L+KG++LVTFIYEK RS D+T+ L KV+Q+ E RS D
Sbjct: 1190 ATTGATVHGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSID 1240
>gi|90403763|gb|ABD93775.1| RNA polymerase beta chain [Dioscorea sp. Qiu 94044]
Length = 862
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI+IV T GA HYG L++G++LVTFIYE+ RS D+T+ L
Sbjct: 636 KSGQIIIVHVDSLVIRSAKPYLVTLGATVHGHYGKILYEGDRLVTFIYERSRSGDITQGL 695
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 696 PKVEQVLEVRSIDSI 710
>gi|385153501|ref|YP_006073258.1| RNA polymerase beta'' subunit (chloroplast) [Phalaenopsis equestris]
gi|329668866|gb|AEB96313.1| RNA polymerase beta'' subunit (chloroplast) [Phalaenopsis equestris]
Length = 1388
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 1089 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 1148
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1149 PKVEQILEVRSIDSI 1163
>gi|254553685|gb|ACT67301.1| RNA polymerase beta' subunit [Joinvillea plicata]
Length = 1382
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG+ LVTFIYEK RS D+T+ L
Sbjct: 1083 KSGQIFIVNVDSLVIRSAKPYLATTGATVHGHYGEILYKGDTLVTFIYEKSRSSDITQGL 1142
Query: 53 SKVKQVLEIRSFD 65
KV+QV E RS D
Sbjct: 1143 PKVEQVFEARSID 1155
>gi|456061876|ref|YP_007476037.1| RNA polymerase beta' subunit [Dasypogon bromeliifolius]
gi|374413207|gb|AEZ49477.1| RNA polymerase beta'' subunit [Dasypogon bromeliifolius]
gi|449326521|gb|AGE93102.1| RNA polymerase beta' subunit [Dasypogon bromeliifolius]
Length = 1382
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI+IV ATPGA HY L++G+ L TFIYEK RS D+T+ L
Sbjct: 1081 KSGQIVIVHVDSLVIRSAKPYLATPGATVHGHYREILYEGDTLATFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1141 PKVEQILEVRSIDSI 1155
>gi|372482394|gb|AEX94842.1| RNA polymerase beta' subunit (chloroplast) [Triteleia hyacinthina]
Length = 1382
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1081 KSGQIFIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1141 PKVEQILEVRSIGSI 1155
>gi|372482323|gb|AEX94808.1| RNA polymerase beta' subunit (chloroplast) [Gilliesia graminea]
Length = 1383
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 47/79 (59%), Gaps = 14/79 (17%)
Query: 3 THLK-SDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
TH+K S QI IV ATPGA HYG L +G+ LVTFIYEK RS D+
Sbjct: 1078 THIKKSGQICIVDVDSLVIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDI 1137
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+Q+LE+RS I
Sbjct: 1138 TQGLPKVEQILEVRSIGSI 1156
>gi|427436967|ref|YP_007026459.1| RNA polymerase beta'' subunit [Festuca altissima]
gi|410177758|gb|AFV62639.1| RNA polymerase beta'' subunit [Festuca altissima]
Length = 1473
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI I+ AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1170 KSGQIFIINMDSFVIRAAKPYLATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1229
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1230 PKVEQIFEARSID 1242
>gi|11467184|ref|NP_043017.1| RNA polymerase beta'' chain [Zea mays]
gi|133443|sp|P16025.1|RPOC2_MAIZE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|12482|emb|CAA35197.1| unnamed protein product [Zea mays]
gi|902214|emb|CAA60278.1| RNA polymerase beta' subunit-2 [Zea mays]
Length = 1527
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1224 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1283
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1284 PKVEQIFEARSID 1296
>gi|374413222|gb|AEZ49483.1| RNA polymerase beta'' subunit [Joinvillea ascendens]
Length = 1379
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG+ LVTFIYEK RS D+T+ L
Sbjct: 1078 KSGQIFIVNVDSLVIRSAKPYLATTGATVHGHYGEILYKGDTLVTFIYEKSRSSDITQGL 1137
Query: 53 SKVKQVLEIRSFD 65
KV+QV E RS D
Sbjct: 1138 PKVEQVFEARSID 1150
>gi|428696920|ref|YP_007025221.1| RNA polymerase beta' subunit [Erodium cossonii]
Length = 1394
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 44/76 (57%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIVQ ATP HYG L +G LVTF+YEK RS D+T+
Sbjct: 1105 LKSGQVLIVQVGYVIIRSAKPYLATPRTTLHGHYGEILSEGATLVTFLYEKSRSADITQG 1164
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1165 LPKVERVFEVRSIDSI 1180
>gi|374413211|gb|AEZ49479.1| RNA polymerase beta'' subunit, partial [Eleusine coracana]
Length = 783
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 480 KSGQIFIVNMDSFVIRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 539
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 540 PKVEQIFEARSID 552
>gi|149390344|ref|YP_001294342.1| RNA polymerase beta'' subunit [Dioscorea elephantipes]
gi|212288317|sp|A6MMJ7.1|RPOC2_DIOEL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|148668036|gb|ABR01420.1| RNA polymerase beta' subunit [Dioscorea elephantipes]
Length = 1382
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI+IV T GA HYG L++G++LVTFIYE+ RS D+T+ L
Sbjct: 1084 KSGQIIIVHVDSLVIRSAKPYLVTLGATVHGHYGKILYEGDRLVTFIYERSRSGDITQGL 1143
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 1144 PKVEQVLEVRSIDSI 1158
>gi|386799163|ref|YP_006280752.1| rpoC2 gene product (chloroplast) [Oryza rufipogon]
gi|336326907|gb|AEI53084.1| RNA polymerase beta' subunit (chloroplast) [Oryza rufipogon]
Length = 1513
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 42/73 (57%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV T GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1212 KSGQIFIVNIDSFVIRAAKPYLVTTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGL 1271
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1272 PKVEQIFEARSID 1284
>gi|387315913|gb|AFJ73389.1| RNA polymerase beta subunit, partial (chloroplast) [Vanilla
planifolia]
Length = 890
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 37/52 (71%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
TPGA HYG KG+ L+TFIYEK RS D+T+ L KV+Q+LE+RS D I
Sbjct: 766 TPGATVHGHYGETFDKGDTLITFIYEKSRSGDITQGLPKVEQILEVRSIDSI 817
>gi|387315915|gb|AFJ73390.1| RNA polymerase beta subunit, partial (chloroplast) [Neuwiedia
singapureana]
Length = 887
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV ATPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 740 KSGQIFIVHVDSLVIRSAKLYLATPGATVHGHYGKTFYEGDTLITFIYEKSRSGDITQGL 799
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS + I
Sbjct: 800 PKVEQILEVRSINSI 814
>gi|427437210|ref|YP_007026717.1| RNA polymerase beta'' subunit [Lolium multiflorum]
gi|410178019|gb|AFV62897.1| RNA polymerase beta'' subunit [Lolium multiflorum]
Length = 1466
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI I+ AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1163 KSGQIFIINMDSFVIRAAKPYLATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1222
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1223 PKVEQIFEARSID 1235
>gi|387569704|gb|AFJ80058.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
palangshanense]
Length = 884
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 737 KSGQICIVHLDSLVIRSAKPYLVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGL 796
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 797 PKVEQILEVRSIDSI 811
>gi|159106856|ref|YP_001531275.1| rpoC2 gene product (chloroplast) [Lolium perenne]
gi|212288327|sp|A8Y9G2.1|RPOC2_LOLPR RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|158934390|emb|CAO85968.1| RNA polymerase beta '' subunit (chloroplast) [Lolium perenne]
Length = 1466
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI I+ AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1163 KSGQIFIINMDSFVIRAAKPYLATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1222
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1223 PKVEQIFEARSID 1235
>gi|372482364|gb|AEX94827.1| RNA polymerase beta' subunit (chloroplast) [Cordyline australis]
Length = 1388
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
+S Q+LIV ATPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1086 QSGQVLIVHVDSLIIRSAKPYLATPGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1146 PKVEQILEVRSIGSI 1160
>gi|118430380|ref|YP_874645.1| RNA polymerase beta' subunit [Hordeum vulgare subsp. vulgare]
gi|212288321|sp|A1E9I3.1|RPOC2_HORVU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|118201034|gb|ABK79405.1| RNA polymerase beta' subunit [Hordeum vulgare subsp. vulgare]
Length = 1477
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFD 65
AT GA HYG L+KG++LVTFIYEK RS D+T+ L KV+Q+ E RS D
Sbjct: 1207 ATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSID 1257
>gi|90403703|gb|ABD93745.1| RNA polymerase beta chain [Annona muricata]
Length = 827
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS Q+L+V A GA HYG L++G+ LVTF+YEK RS D+T+
Sbjct: 599 HRKSGQVLVVHVDYLVIRSAKPHLAIRGATVHGHYGEILYEGDTLVTFLYEKSRSGDITQ 658
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS + I
Sbjct: 659 GLPKVEQVLEVRSIESI 675
>gi|372482333|gb|AEX94813.1| RNA polymerase beta' subunit (chloroplast) [Scadoxus cinnabarinus]
Length = 1373
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
K QILIV A TPGA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1082 KPGQILIVHADSLVIRSAKPYLATPGATVRGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1141
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1142 PKVEQILEVRSIGSI 1156
>gi|90403815|gb|ABD93801.1| RNA polymerase beta chain [Oncidium sphacelatum]
Length = 798
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG +G+ L+TFIYEK RS D+T+ L
Sbjct: 572 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFSEGDTLITFIYEKSRSGDITQGL 631
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 632 PKVEQILEVRSIDSI 646
>gi|295311722|ref|YP_003587458.1| RNA polymerase beta'' subunit [Oncidium Gower Ramsey]
gi|254833099|gb|ACT83102.1| RNA polymerase beta'' subunit [Oncidium Gower Ramsey]
Length = 1382
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV TPGA HYG +G+ L+TFIYEK RS D+T+ L
Sbjct: 1086 KSGQIFIVHVDSLVIRSAKPYLVTPGATVHGHYGETFSEGDTLITFIYEKSRSGDITQGL 1145
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1146 PKVEQILEVRSIDSI 1160
>gi|392841328|gb|AFM83283.1| RNA polymerase beta' subunit (chloroplast) [Kingia australis]
Length = 1385
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV ATPGA HY L++G+ L TF+YEK RS D+T+ L
Sbjct: 1084 KSGQILIVYVDSLVIRSAKPYLATPGATVHGHYREILYEGDTLATFLYEKSRSGDITQGL 1143
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 1144 PKVEQILEVRSIDSI 1158
>gi|90403785|gb|ABD93786.1| RNA polymerase beta chain [Tradescantia sp. Qiu 96059]
Length = 833
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 14/81 (17%)
Query: 1 DHTHLK-SDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSC 46
D +H+K S QI+I+ A PGA HY L++G+ LVTFIYEK +S
Sbjct: 601 DESHVKKSGQIIILHADSLVIRLAKPYLAIPGATVHGHYRKLLYEGDTLVTFIYEKSKSG 660
Query: 47 DLTRALSKVKQVLEIRSFDLI 67
D+T+ L KV+Q+LE+RS D I
Sbjct: 661 DITQGLPKVEQILEVRSIDSI 681
>gi|335352798|gb|AEH42621.1| RNA polymerase beta subunit [Linum usitatissimum]
Length = 1380
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
D H KS Q++IV ATP A HYG L++G+ LVTF+YEK RS D
Sbjct: 1091 DGPHRKSGQVIIVYVGSAVIRSAKPYLATPEATVHGHYGKILYEGDTLVTFLYEKSRSGD 1150
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+T+ L KV+++ E+RS D I
Sbjct: 1151 ITQGLPKVEKMFEVRSIDSI 1170
>gi|387315903|gb|AFJ73384.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
flavum]
Length = 887
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
TPGA HYG ++GN L+TFIY K RS D+T+ L KV+Q+LE+RS D I
Sbjct: 763 TPGATVHGHYGETFYEGNTLITFIYAKSRSGDITQGLPKVEQILEVRSIDSI 814
>gi|387569698|gb|AFJ80055.1| RNA polymerase beta subunit, partial (chloroplast) [Cypripedium
passerinum]
Length = 887
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
TPGA HYG ++GN L+TFIY K RS D+T+ L KV+Q+LE+RS D I
Sbjct: 763 TPGATVHGHYGETFYEGNTLITFIYAKSRSGDITQGLPKVEQILEVRSIDSI 814
>gi|157690160|gb|ABV65767.1| RNA polymerase beta'' subunit, partial (chloroplast) [Polygala
cruciata]
Length = 1070
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ A G+ H G L++G+ LVTF+YEK RS D+T+
Sbjct: 865 HLKSGQVLIVQVDSVIIRSAKPYLAARGSTVHGHCGERLYEGDPLVTFLYEKSRSNDITQ 924
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV++VLE RSFD I
Sbjct: 925 GLPKVERVLEARSFDSI 941
>gi|408900011|gb|AFU94801.1| RpoC2, partial (chloroplast) [Medusagyne oppositifolia]
Length = 1613
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/79 (45%), Positives = 44/79 (55%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV ATPGA HYG L++G+ LVTFIYEK RS D+
Sbjct: 1293 HXXLKSGQVIIVHVDSVVLRAAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+QV D I
Sbjct: 1353 TQGLPKVEQVXXXXXIDSI 1371
>gi|374413260|gb|AEZ49500.1| RNA polymerase beta'' subunit, partial [Tradescantia ohiensis]
Length = 1363
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 14/81 (17%)
Query: 1 DHTHLK-SDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSC 46
D +H+K S QI+I+ A PGA HY L++G+ LVTFIYEK +S
Sbjct: 1076 DESHVKKSGQIIILHADSLVIRLAKPYLAIPGATVHGHYRKLLYEGDTLVTFIYEKSKSG 1135
Query: 47 DLTRALSKVKQVLEIRSFDLI 67
D+T+ L KV+Q+LE+RS D I
Sbjct: 1136 DITQGLPKVEQILEVRSIDSI 1156
>gi|197131650|gb|ACH47343.1| RNA polymerase beta subunit [Sarcocaulon vanderietiae]
Length = 1392
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIVQ A PGA HYG L G LVTF+Y+K RS D+T+
Sbjct: 1101 LKSGQVLIVQVGYVIIRSAKPYLAIPGATVHGHYGKILSAGGTLVTFLYKKSRSSDITQG 1160
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+++ E+RS D I
Sbjct: 1161 LPKVERMFEVRSTDSI 1176
>gi|90403805|gb|ABD93796.1| RNA polymerase beta chain [Tacca chantieri]
Length = 865
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 47/79 (59%), Gaps = 13/79 (16%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV AT GA +YG L++G+ LVTF YEK RS D+T+ L
Sbjct: 639 KSGQILIVHVDSLVIRSAKPYLATLGATVHGYYGKILYEGDTLVTFNYEKSRSGDITQGL 698
Query: 53 SKVKQVLEIRSFDLILACL 71
KV+QVLE+RS D I A L
Sbjct: 699 PKVEQVLEVRSIDSISANL 717
>gi|374413209|gb|AEZ49478.1| RNA polymerase beta'' subunit, partial [Ecdeiocolea monostachya]
Length = 1366
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 8 DQILIVQATP-----GAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
D ++I A P GA HYG L+KG+ LVTFIYEK RS D+T+ L KV+Q+ E R
Sbjct: 1075 DSLVIRSAKPYLSITGATLHGHYGGILYKGDTLVTFIYEKSRSSDITQGLPKVEQIFEAR 1134
Query: 63 SFD 65
S D
Sbjct: 1135 SID 1137
>gi|295136941|ref|YP_003587774.1| RNA polymerase beta'' subunit [Lathyrus sativus]
gi|293338663|gb|ADE43635.1| RNA polymerase beta'' subunit (chloroplast) [Lathyrus sativus]
Length = 1382
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++ VQ ATP + HYG L +G+ LVTF+YEK RS D+
Sbjct: 1091 HLKLKSGQVITVQMDSVIIRSANPYLATPESTIHGHYGEILSQGDILVTFLYEKSRSSDI 1150
Query: 49 TRALSKVKQVLEIRS 63
T+ L KV+Q+ EIRS
Sbjct: 1151 TQGLPKVEQIFEIRS 1165
>gi|377657739|gb|AFB74303.1| DNA-directed RNA polymerase beta' chain, partial (chloroplast)
[Pereskiopsis diguetii]
Length = 843
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 44/77 (57%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ T G HYG ++ G+ LVTFIYEK S D+T+
Sbjct: 615 HLKSGQVLIVQFDSVVIRSAKPYLVTSGTRVQSHYGEIIYGGDILVTFIYEKSGSSDITQ 674
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE RS D I
Sbjct: 675 GLPKVEQVLEARSIDSI 691
>gi|408830191|ref|YP_006883169.1| RNA polymerase beta' subunit [Erodium guttatum]
Length = 1397
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 44/78 (56%), Gaps = 15/78 (19%)
Query: 5 LKSDQILIVQ--------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL-T 49
LKS Q+LIVQ ATPG HYG L G LVTF+YEK RS D+ T
Sbjct: 1113 LKSGQVLIVQQGGYRIIRSAKPYLATPGTTVHGHYGEILSGGGTLVTFLYEKSRSADITT 1172
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV++V E+RS D I
Sbjct: 1173 QGLPKVERVFEVRSMDSI 1190
>gi|309322096|ref|YP_003933912.1| RNA polymerase beta' subunit [Erodium texanum]
gi|300069189|gb|ADJ66311.1| RNA polymerase beta' subunit [Erodium texanum]
Length = 1397
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 44/78 (56%), Gaps = 15/78 (19%)
Query: 5 LKSDQILIVQ--------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL-T 49
LKS Q+LIVQ ATPG HYG L G LVTF+YEK RS D+ T
Sbjct: 1113 LKSGQVLIVQQGGYRIIRSAKPYLATPGTTVHGHYGEILSGGGTLVTFLYEKSRSADITT 1172
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV++V E+RS D I
Sbjct: 1173 QGLPKVERVFEVRSMDSI 1190
>gi|197131640|gb|ACH47338.1| RNA polymerase beta subunit [Erodium texanum]
Length = 1395
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 44/78 (56%), Gaps = 15/78 (19%)
Query: 5 LKSDQILIVQ--------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL-T 49
LKS Q+LIVQ ATPG HYG L G LVTF+YEK RS D+ T
Sbjct: 1113 LKSGQVLIVQQGGYRIIRSAKPYLATPGTTVHGHYGEILSGGGTLVTFLYEKSRSADITT 1172
Query: 50 RALSKVKQVLEIRSFDLI 67
+ L KV++V E+RS D I
Sbjct: 1173 QGLPKVERVFEVRSMDSI 1190
>gi|428696847|ref|YP_007025148.1| RNA polymerase beta' subunit [Erodium cygnorum]
Length = 1413
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LK Q+LIVQ ATP HYG L +G LVTF+YEK RS D+T+
Sbjct: 1109 LKPGQVLIVQVGYVIIRSAKPYLATPETTVHGHYGEILSEGGILVTFLYEKSRSADITQG 1168
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++V E+RS D I
Sbjct: 1169 LPKVERVFEVRSIDSI 1184
>gi|426406631|ref|YP_007026545.1| RNA polymerase beta'' subunit [Festuca ovina]
gi|410177845|gb|AFV62725.1| RNA polymerase beta'' subunit [Festuca ovina]
Length = 1473
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI I+ AT GA HYG L+KG++LVTFIYEK RS D+T+ L
Sbjct: 1170 KSGQIFIINMDSFVIRAAKPYLATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGL 1229
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS +
Sbjct: 1230 PKVEQIFEARSIN 1242
>gi|90403687|gb|ABD93737.1| RNA polymerase beta chain [Brasenia schreberi]
Length = 760
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
T +KS Q+++V AT GA YG ++G+ LVTFIYEK RS D+T
Sbjct: 531 TRIKSGQVIMVNVDSFIIRSAKPYLATRGATVHGDYGEIFYEGDTLVTFIYEKSRSGDIT 590
Query: 50 RALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 591 HGLPKVEQVLEVRSIDSI 608
>gi|90403853|gb|ABD93820.1| RNA polymerase beta chain [Cabomba sp. Qiu 97027]
Length = 797
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
T +KS Q+++V AT GA YG ++G+ LVTFIYEK RS D+T
Sbjct: 568 TRIKSGQVIMVHVDSFIIRSAKPYLATRGATVHGDYGEIFYEGDTLVTFIYEKSRSGDIT 627
Query: 50 RALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 628 HGLPKVEQVLEVRSIDSI 645
>gi|387569690|gb|AFJ80051.1| RNA polymerase beta subunit, partial (chloroplast) [Paphiopedilum
besseae]
Length = 880
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 7 SDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALS 53
S QI IV A PGA HYG ++G+ L+TFIYEK RS D+T+ L
Sbjct: 734 SGQIFIVHADSLVIRSAKPYLVIPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGLP 793
Query: 54 KVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 794 KVEQILEVRSIDSI 807
>gi|309322260|ref|YP_003934338.1| RNA polymerase beta' subunit [Monsonia speciosa]
gi|197131648|gb|ACH47342.1| RNA polymerase beta subunit [Monsonia speciosa]
gi|300069353|gb|ADJ66473.1| RNA polymerase beta' subunit [Monsonia speciosa]
Length = 1398
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+LIVQ A PGA HYG L G+ LVT++Y+K RS D+T+
Sbjct: 1103 LKSGQVLIVQVGYVIIRSSKPYLAIPGATLHGHYGKILSAGDTLVTYLYKKSRSSDITQG 1162
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+++ E+RS D I
Sbjct: 1163 LPKVERMFEVRSTDSI 1178
>gi|387315899|gb|AFJ73382.1| RNA polymerase beta subunit, partial (chloroplast) [Mexipedium
xerophyticum]
Length = 872
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV A TPGA HYG ++G+ L+TFIYEK S D+T+ L
Sbjct: 725 KSGQICIVHADSLVIRSAKPYLITPGATVHGHYGQTFYEGDTLITFIYEKSISGDITQGL 784
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 785 PKVEQILEVRSIDSI 799
>gi|157325520|ref|YP_001468298.1| RNA polymerase beta'' subunit [Ipomoea purpurea]
gi|212288323|sp|A7Y3B4.1|RPOC2_IPOPU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|157056748|gb|ABV02338.1| RNA polymerase beta' subunit [Ipomoea purpurea]
Length = 1401
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+++VQ ATPGA YG ++G+ LVTF YEK RS D+T+
Sbjct: 1093 LKSGQVILVQVDSVVIRSAKPYLATPGATVRGLYGETFYEGDTLVTFHYEKSRSGDITQG 1152
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1153 LPKVEQVLEVRSVDSI 1168
>gi|372482348|gb|AEX94820.1| RNA polymerase beta' subunit (chloroplast) [Kniphofia linearifolia]
Length = 1380
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV AT GA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1084 KSGQILIVHVNSLVIRSAKPYLATLGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1143
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1144 PKVEQILEVRSIGSI 1158
>gi|372482344|gb|AEX94818.1| RNA polymerase beta' subunit (chloroplast) [Asphodeline damascena]
Length = 1381
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV AT GA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1085 KSGQILIVHVNSLVLRSAKPYLATLGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1144
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1145 PKVEQILEVRSIGSI 1159
>gi|408900007|gb|AFU94799.1| RpoC2, partial (chloroplast) [Linum usitatissimum]
Length = 1600
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H KS Q++IV ATP A HYG L++G+ LVTF+YEK RS D+
Sbjct: 1292 HXXRKSGQVIIVYVGSAVIRSAKPYLATPEATVHGHYGKILYEGDTLVTFLYEKSRSGDI 1351
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV+++ E+RS D I
Sbjct: 1352 TQGLPKVEKMFEVRSIDSI 1370
>gi|427437064|ref|YP_007026631.1| RNA polymerase beta'' subunit [Festuca pratensis]
gi|410177932|gb|AFV62811.1| RNA polymerase beta'' subunit [Festuca pratensis]
Length = 1473
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI I+ AT GA HYG L+KG++LVTFIY K RS D+T+ L
Sbjct: 1170 KSGQIFIINMDSFVIRAAKPYLATTGATVNGHYGEILYKGDRLVTFIYAKSRSSDITQGL 1229
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1230 PKVEQIFEARSID 1242
>gi|90403689|gb|ABD93738.1| RNA polymerase beta chain [Nuphar sp. YLQ-2003]
Length = 839
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
T +KS Q+++V AT GA YG ++G+ LVTFIYEK RS D+T
Sbjct: 610 TRIKSGQVIMVYVDSFIIRSAKPYLATRGATVHGDYGEIFYEGDTLVTFIYEKSRSGDIT 669
Query: 50 RALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 670 HGLPKVEQVLEVRSIDSI 687
>gi|90403855|gb|ABD93821.1| RNA polymerase beta chain [Nymphaea sp. Qiu 91029]
Length = 797
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
T +KS Q+++V AT GA YG ++G+ LVTFIYEK RS D+T
Sbjct: 566 TRIKSGQVIMVYLDSFIIRSAKPYLATRGATVHGDYGEIFYEGDTLVTFIYEKSRSGDIT 625
Query: 50 RALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 626 HGLPKVEQVLEVRSIDSI 643
>gi|387315891|gb|AFJ73378.1| RNA polymerase beta subunit, partial (chloroplast) [Paphiopedilum
primulinum]
Length = 877
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS +ILIV TPGA HYG ++ + L+TFIYEK RS D+T+ L
Sbjct: 730 KSGKILIVHVDSLVIRSAKPYLVTPGATVHGHYGKTFYERDTLITFIYEKSRSGDITQGL 789
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 790 PKVEQILEVRSIDSI 804
>gi|126165899|ref|YP_053145.2| RNA polymerase beta'' subunit [Nymphaea alba]
Length = 1397
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
T +KS Q+++V AT GA YG ++G+ LVTFIYEK RS D+T
Sbjct: 1080 TRIKSGQVIMVYLDSFIIRSAKPYLATRGATVHGDYGEIFYEGDTLVTFIYEKSRSGDIT 1139
Query: 50 RALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1140 HGLPKVEQVLEVRSIDSI 1157
>gi|68053297|sp|Q6EW58.1|RPOC2_NYMAL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|50250317|emb|CAF28583.1| RNA polymerase beta' subunit-2 [Nymphaea alba]
Length = 1401
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
T +KS Q+++V AT GA YG ++G+ LVTFIYEK RS D+T
Sbjct: 1084 TRIKSGQVIMVYLDSFIIRSAKPYLATRGATVHGDYGEIFYEGDTLVTFIYEKSRSGDIT 1143
Query: 50 RALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1144 HGLPKVEQVLEVRSIDSI 1161
>gi|121720603|ref|YP_001001524.1| RNA polymerase beta' subunit [Nuphar advena]
gi|69216857|gb|AAZ03981.1| RNA polymerase beta'' chain [Nuphar advena]
gi|84682194|gb|ABC60448.1| RNA polymerase beta' subunit [Nuphar advena]
Length = 1390
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
T +KS Q+++V AT GA YG ++G+ LVTFIYEK RS D+T
Sbjct: 1087 TRIKSGQVIMVYVDSFIIRSAKPYLATRGATVHGDYGEIFYEGDTLVTFIYEKSRSGDIT 1146
Query: 50 RALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1147 HGLPKVEQVLEVRSIDSI 1164
>gi|387569688|gb|AFJ80050.1| RNA polymerase beta subunit, partial (chloroplast) [Phragmipedium
exstaminodium]
Length = 882
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 7 SDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALS 53
S QI IV A PGA HYG ++G+ ++TFIYEK RS D+T+ L
Sbjct: 736 SGQIFIVHADSLVIRSAKPYLVIPGATVHGHYGETFYEGDTVITFIYEKSRSGDITQGLP 795
Query: 54 KVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 796 KVEQILEVRSIDSI 809
>gi|372482350|gb|AEX94821.1| RNA polymerase beta' subunit (chloroplast) [Doryanthes palmeri]
Length = 1386
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
+ PGA HYG L++G+ LVTFIYEK RS D+T+ L KV+Q+LE+RS I
Sbjct: 1105 SIPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQILEVRSIGSI 1157
>gi|90403879|gb|ABD93833.1| RNA polymerase beta chain [Xanthorrhoea quadrangulata]
Length = 811
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 585 KSGQIFIVHVDSLVIRSAKPYLATLGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 644
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 645 PKVEQILEVRSIGSI 659
>gi|387315893|gb|AFJ73379.1| RNA polymerase beta subunit, partial (chloroplast) [Phragmipedium
caricinum]
Length = 880
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 7 SDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALS 53
S QI IV A PGA HYG ++G+ ++TFIYEK RS D+T+ L
Sbjct: 734 SGQIFIVHADSLVIRSAKPYLVIPGATVHGHYGETFYEGDTVITFIYEKSRSGDITQGLP 793
Query: 54 KVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 794 KVEQILEVRSIDSI 807
>gi|387315897|gb|AFJ73381.1| RNA polymerase beta subunit, partial (chloroplast) [Phragmipedium
longifolium]
Length = 880
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 7 SDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALS 53
S QI IV A PGA HYG ++G+ ++TFIYEK RS D+T+ L
Sbjct: 734 SGQIFIVHADSLVIRSAKPYLVIPGATVHGHYGETFYEGDTVITFIYEKSRSGDITQGLP 793
Query: 54 KVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 794 KVEQILEVRSIDSI 807
>gi|387315895|gb|AFJ73380.1| RNA polymerase beta subunit, partial (chloroplast) [Phragmipedium
lindleyanum]
Length = 880
Score = 60.8 bits (146), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 13/74 (17%)
Query: 7 SDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALS 53
S QI IV A PGA HYG ++G+ ++TFIYEK RS D+T+ L
Sbjct: 734 SGQIFIVHADSLVIRSAKPYLVIPGATVHGHYGETFYEGDTVITFIYEKSRSGDITQGLP 793
Query: 54 KVKQVLEIRSFDLI 67
KV+Q+LE+RS D I
Sbjct: 794 KVEQILEVRSIDSI 807
>gi|372482396|gb|AEX94843.1| RNA polymerase beta' subunit (chloroplast) [Xanthorrhoea preissii]
Length = 1368
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1067 KSGQIFIVHVDSLVIRSAKPYLATLGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1126
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1127 PKVEQILEVRSIGSI 1141
>gi|372482352|gb|AEX94822.1| RNA polymerase beta' subunit (chloroplast) [Phormium tenax]
gi|374413241|gb|AEZ49491.1| RNA polymerase beta'' subunit, partial [Phormium tenax]
Length = 1386
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L +G+ LVTFIYEK RS D+T+ L
Sbjct: 1081 KSGQIFIVHVDSLVIRSAKPYLATLGATVHGHYGETLSEGDTLVTFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1141 PKVEQILEVRSIGSI 1155
>gi|387569682|gb|AFJ80047.1| RNA polymerase beta subunit, partial (chloroplast) [Paphiopedilum
dianthum]
Length = 877
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
TPGA HYG ++ + L+TFIYEK RS D+T+ L KV+Q+LE+RS D I
Sbjct: 753 TPGATVHGHYGKTFYERDTLITFIYEKSRSGDITQGLPKVEQILEVRSIDSI 804
>gi|387315889|gb|AFJ73377.1| RNA polymerase beta subunit, partial (chloroplast) [Paphiopedilum
wardii]
Length = 880
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
TPGA HYG ++ + L+TFIYEK RS D+T+ L KV+Q+LE+RS D I
Sbjct: 756 TPGATVHGHYGKTFYERDTLITFIYEKSRSGDITQGLPKVEQILEVRSIDSI 807
>gi|387315887|gb|AFJ73376.1| RNA polymerase beta subunit, partial (chloroplast) [Paphiopedilum
hirsutissimum]
Length = 879
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
TPGA HYG ++ + L+TFIYEK RS D+T+ L KV+Q+LE+RS D I
Sbjct: 755 TPGATVHGHYGKTFYERDTLITFIYEKSRSGDITQGLPKVEQILEVRSIDSI 806
>gi|408899973|gb|AFU94782.1| RpoC2, partial (chloroplast) [Chrysobalanus icaco]
Length = 1630
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 24 HYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
HYG L++G+ LVTFIYEK RS D+T+ L KV+QVLE+RS D I
Sbjct: 1328 HYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSI 1371
>gi|387315885|gb|AFJ73375.1| RNA polymerase beta subunit, partial (chloroplast) [Paphiopedilum
bellatulum]
Length = 877
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
TPGA HYG ++ + L+TFIYEK RS D+T+ L KV+Q+LE+RS D I
Sbjct: 753 TPGATVHGHYGETFYERDTLITFIYEKSRSGDITQGLPKVEQILEVRSIDSI 804
>gi|387569680|gb|AFJ80046.1| RNA polymerase beta subunit, partial (chloroplast) [Paphiopedilum
adductum]
Length = 877
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
TPGA HYG ++ + L+TFIYEK RS D+T+ L KV+Q+LE+RS D I
Sbjct: 753 TPGATVHGHYGKTFYERDTLITFIYEKSRSGDITQGLPKVEQILEVRSIDSI 804
>gi|197131638|gb|ACH47337.1| RNA polymerase beta subunit [Erodium chrysanthum]
Length = 1395
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+ IVQA TP HYG L +G LVTF+YEK RS D+T L
Sbjct: 1112 KSGQVFIVQAGYRIIRAAKPYLATPETTVHGHYGELLSEGGTLVTFLYEKSRSADITHGL 1171
Query: 53 SKVKQVLEIRSFDLI 67
KV++ E+RS D I
Sbjct: 1172 PKVERAFEVRSIDSI 1186
>gi|347810140|gb|AEP25212.1| RNA polymerase C2 [Celosia cristata]
Length = 1087
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1024 HLKSGQVLIVQFDSLVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1083
Query: 51 ALSK 54
L K
Sbjct: 1084 GLPK 1087
>gi|357506063|ref|XP_003623320.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355498335|gb|AES79538.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 387
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 24 HYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
HYG L++G+ LVTFIYEK RS D+T+ L KV+Q+LEIRS D I
Sbjct: 168 HYGEILYQGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSI 211
>gi|372482342|gb|AEX94817.1| RNA polymerase beta' subunit (chloroplast) [Aloe vera]
Length = 1378
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QILIV AT GA HYG L +G+ LVTFIY K RS D+T+ L
Sbjct: 1082 KSGQILIVHVNSLVIRSAKPYLATLGATVHGHYGETLSEGDTLVTFIYAKSRSGDITQGL 1141
Query: 53 SKVKQVLEIRSFDLI 67
KV+Q+LE+RS I
Sbjct: 1142 PKVEQILEVRSIGSI 1156
>gi|347810158|gb|AEP25218.1| RNA polymerase C2 [Mollugo verticillata]
Length = 1088
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1025 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1084
Query: 51 ALSK 54
L K
Sbjct: 1085 GLPK 1088
>gi|347810138|gb|AEP25211.1| RNA polymerase C2 [Bougainvillea glabra]
Length = 1083
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1020 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1079
Query: 51 ALSK 54
L K
Sbjct: 1080 GLPK 1083
>gi|347810172|gb|AEP25225.1| RNA polymerase C2 [Portulaca oleracea]
Length = 1083
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1020 HLKSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1079
Query: 51 ALSK 54
L K
Sbjct: 1080 GLPK 1083
>gi|347810136|gb|AEP25210.1| RNA polymerase C2 [Basella alba]
Length = 1136
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1073 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1132
Query: 51 ALSK 54
L K
Sbjct: 1133 GLPK 1136
>gi|372482346|gb|AEX94819.1| RNA polymerase beta' subunit (chloroplast) [Haworthia cymbiformis]
Length = 1373
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI IV AT GA HYG L +G+ L+TFIYEK RS D+T+ L
Sbjct: 1081 KSGQIFIVHVNSLVIRPAKPYLATLGATVHGHYGETLSEGDTLITFIYEKSRSGDITQGL 1140
Query: 53 SKVKQVLEIRSFDLI 67
K++Q+LE+RS I
Sbjct: 1141 PKIEQILEVRSIGSI 1155
>gi|347810156|gb|AEP25217.1| RNA polymerase C2 [Mirabilis jalapa]
Length = 844
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 781 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 840
Query: 51 ALSK 54
L K
Sbjct: 841 GLPK 844
>gi|347810168|gb|AEP25223.1| RNA polymerase C2 [Phytolacca americana]
Length = 1123
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1060 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1119
Query: 51 ALSK 54
L K
Sbjct: 1120 GLPK 1123
>gi|357512447|ref|XP_003626512.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355501527|gb|AES82730.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 528
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 24 HYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
HYG L++G+ LVTFIYEK RS D+T+ L KV+Q+LEIRS D I
Sbjct: 281 HYGEILYQGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSI 324
>gi|347810142|gb|AEP25213.1| RNA polymerase C2 [Claytonia virginica]
Length = 1093
Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1030 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1089
Query: 51 ALSK 54
SK
Sbjct: 1090 GPSK 1093
>gi|347810162|gb|AEP25220.1| RNA polymerase C2 [Opuntia microdasys]
Length = 1077
Score = 58.5 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPG RHYG ++ G+ LVTFIYEK RS D+T+
Sbjct: 1014 HLKSGQVLIVQFDSVVIRSAKPYLATPGTRVQRHYGEIIYGGDILVTFIYEKSRSSDITQ 1073
Query: 51 ALSK 54
L K
Sbjct: 1074 GLPK 1077
>gi|408900039|gb|AFU94815.1| RpoC2, partial (chloroplast) [Turnera ulmifolia]
Length = 1629
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 13/77 (16%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H KS Q++I+ TPG+ + +YG L+KG++L TF+YEK RS D+
Sbjct: 1293 HXXPKSGQVIIIHLESLVLRSAKPYLVTPGSTIYGNYGERLYKGHRLATFLYEKSRSDDI 1352
Query: 49 TRALSKVKQVLEIRSFD 65
T+ L KV+++ E+RS D
Sbjct: 1353 TQGLPKVEKMFEVRSTD 1369
>gi|347810176|gb|AEP25227.1| RNA polymerase C2 [Rivina humilis]
Length = 1106
Score = 58.2 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK+ Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1043 HLKAGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1102
Query: 51 ALSK 54
L K
Sbjct: 1103 VLPK 1106
>gi|441480327|gb|AGC38238.1| RNA polymerase beta'' subunit (chloroplast) [Cryptochloa
strictiflora]
Length = 1510
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 13/73 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS QI +V AT GA HY +KG++LVTFIY K RS D+T+ L
Sbjct: 1210 KSGQIFVVNIDSFVIRAAKTYLATTGATVHGHYREIFYKGDRLVTFIYAKSRSSDITQGL 1269
Query: 53 SKVKQVLEIRSFD 65
KV+Q+ E RS D
Sbjct: 1270 PKVEQIFEARSID 1282
>gi|347810160|gb|AEP25219.1| RNA polymerase C2 [Nepenthes alata]
Length = 1088
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS QI+IVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1025 HFKSGQIIIVQVDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1084
Query: 51 ALSK 54
L K
Sbjct: 1085 VLPK 1088
>gi|347810170|gb|AEP25224.1| RNA polymerase C2 [Persicaria virginiana]
Length = 1131
Score = 57.4 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLK+ Q+LIVQ ATPGA HYG +++G+ +VTFIYEK RS D+T+
Sbjct: 1068 HLKAGQVLIVQVDSVVIRAAKPYLATPGATVHGHYGEIIYEGDTVVTFIYEKSRSGDITQ 1127
Query: 51 ALSK 54
L K
Sbjct: 1128 GLPK 1131
>gi|374413198|gb|AEZ49473.1| RNA polymerase beta'' subunit [Centrolepis monogyna]
Length = 1402
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
TPGA HYG L++ L TF+YEK RS D+T+ L KV+Q+ E RS D I
Sbjct: 1127 TPGASIHGHYGEILYERETLATFLYEKSRSSDITQGLPKVEQIFEARSIDSI 1178
>gi|308096665|gb|ADO13889.1| RNA polymerase beta subunit [Tragopogon dubius]
Length = 1111
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 36/59 (61%), Gaps = 13/59 (22%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
HLKS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK RS D+T
Sbjct: 1053 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDIT 1111
>gi|115531904|ref|YP_784060.1| RNA polymerase beta' subunit 2 [Pelargonium x hortorum]
gi|122164290|sp|Q06FX1.1|RPOC2_PELHO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|112382058|gb|ABI17251.1| RNA polymerase beta' subunit 2 [Pelargonium x hortorum]
Length = 1376
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 13/72 (18%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q+ I+Q A PGA H G ++ G+ LVTFIYEK RS D+T+
Sbjct: 1095 LKSGQVFILQVGYVIIRSGKPYLAIPGATVHGHSGQIVYGGDTLVTFIYEKARSADITQG 1154
Query: 52 LSKVKQVLEIRS 63
L KV + E+RS
Sbjct: 1155 LPKVDAMFEVRS 1166
>gi|156618816|ref|YP_001430098.1| RNA polymerase beta'' subunit [Cuscuta reflexa]
gi|212277657|sp|A7M956.1|RPOC2_CUSRE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|156556001|emb|CAM98384.1| RNA polymerase beta'' chain [Cuscuta reflexa]
Length = 1379
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
KS Q++ +Q ATPGA YG G+ +VTF YEK RS D+T+
Sbjct: 1079 FKSGQVIFIQVDSVVIRLAKPYLATPGATVHGLYGETFFGGDTVVTFNYEKSRSGDITQG 1138
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 1139 LPKVEQVLEVRSVDSI 1154
>gi|347810184|gb|AEP25231.1| RNA polymerase C2 [Stellaria media]
Length = 1107
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIV ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1044 HLKSGQVLIVHFDSVVIRSAKPRLATPGATVQGHYGKLIYEGDTLVTFIYEKSRSGDITQ 1103
Query: 51 ALSK 54
L K
Sbjct: 1104 GLPK 1107
>gi|157690110|gb|ABV65742.1| RNA polymerase beta'' subunit, partial (chloroplast) [Hua gabonii]
Length = 1197
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IVQA T G YG L++G+ L ++IYEK RS D+T+
Sbjct: 1061 LKSGQVIIVQADSVVIRSAKPYLLTGGTTDQGPYGEILYEGDTLYSYIYEKPRSSDITQG 1120
Query: 52 LSKVKQVLEIRSFDLI 67
L KV++VLE RS D I
Sbjct: 1121 LPKVERVLEARSIDSI 1136
>gi|374413258|gb|AEZ49499.1| RNA polymerase beta'' subunit, partial [Thamnochortus insignis]
Length = 1386
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
TPGA HYG L++G+ L F+YEK RS D+T+ L KV+Q+ E RS + I
Sbjct: 1110 TPGASIHGHYGEILYEGDTLAMFLYEKSRSSDITQGLPKVEQIFEARSINSI 1161
>gi|347810186|gb|AEP25232.1| RNA polymerase C2 [Talinum paniculatum]
Length = 1099
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA H+G +++G+ LVTF+YEK RS D+T+
Sbjct: 1036 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHFGEIIYEGDTLVTFMYEKSRSGDITQ 1095
Query: 51 ALSK 54
L K
Sbjct: 1096 VLPK 1099
>gi|347810134|gb|AEP25209.1| RNA polymerase C2 [Asteropeia micraster]
Length = 1106
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 13/60 (21%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1044 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1103
>gi|347810130|gb|AEP25207.1| RNA polymerase C2 [Alluaudia ascendens]
Length = 1101
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 13/60 (21%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1042 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1101
>gi|408900043|gb|AFU94817.1| RpoC2, partial (chloroplast) [Vismia ferruginea]
Length = 1602
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 13/72 (18%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LK Q++IV A PGA R YG ++ G+ L+TF+YEK RS D+T+
Sbjct: 1296 LKPGQVIIVHLDSVVIRSAKPYLAIPGATIHRRYGEIIYNGDTLLTFLYEKSRSSDITQG 1355
Query: 52 LSKVKQVLEIRS 63
L KV+++ E RS
Sbjct: 1356 LQKVEKIFEARS 1367
>gi|347810182|gb|AEP25230.1| RNA polymerase C2 [Stegnosperma halimifolium]
Length = 679
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 13/62 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
H KS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 617 HFKSGQVLIVQFDSVIIRLAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 676
Query: 51 AL 52
L
Sbjct: 677 GL 678
>gi|347810132|gb|AEP25208.1| RNA polymerase C2 [Ancistrocladus korupensis]
Length = 1074
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 13/62 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
+LKS QILIVQ ATPGA HYG L++G+ L+TFIYEK RS D+T+
Sbjct: 1012 NLKSGQILIVQVNSVVIRSAKPYLATPGATVHGHYGEILYEGDTLLTFIYEKSRSGDITQ 1071
Query: 51 AL 52
L
Sbjct: 1072 VL 1073
>gi|90403891|gb|ABD93839.1| RNA polymerase beta chain [Trimenia moorei]
Length = 810
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
+KS Q+L+ ATPG YG L+ G+ LVTF+YEK RS D+T+
Sbjct: 583 IKSGQVLVFHLDSLVIRSAKPHLATPGTTIHGDYGEILYGGDTLVTFLYEKSRSGDITQG 642
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+++ E+RS + I
Sbjct: 643 LPKVERMFEVRSINSI 658
>gi|347810178|gb|AEP25228.1| RNA polymerase C2 [Sarcobatus vermiculatus]
Length = 1092
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 13/59 (22%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
HLKS Q+LIVQ ATPGA HYG ++G+ LVTFIYEK RS D+T
Sbjct: 1034 HLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIFYEGDTLVTFIYEKSRSGDIT 1092
>gi|347810174|gb|AEP25226.1| RNA polymerase C2 [Rhabdodendron amazonicum]
Length = 1105
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 13/62 (20%)
Query: 1 DHTHLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
+ HLKS Q+LIVQA TPGA HYG +++G+ LVTFIYEK RS D
Sbjct: 1044 NEPHLKSGQVLIVQADSVVIRLAKPYLATPGATVHGHYGEIVYEGDTLVTFIYEKSRSGD 1103
Query: 48 LT 49
+T
Sbjct: 1104 IT 1105
>gi|159161243|ref|YP_001542521.1| RNA polymerase beta' subunit [Cuscuta exaltata]
gi|212277064|sp|A8W3B4.1|RPOC2_CUSEX RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|158938668|gb|ABW83685.1| RNA polymerase beta' subunit [Cuscuta exaltata]
Length = 1379
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 13/75 (17%)
Query: 6 KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
KS Q+++VQ ATPGA YG G+ +VTF YEK S D+T+ L
Sbjct: 1094 KSGQVILVQVDSVVIRLAKPYLATPGATVHGLYGETFFGGDTVVTFNYEKSISGDITQGL 1153
Query: 53 SKVKQVLEIRSFDLI 67
KV+QVLE+RS D I
Sbjct: 1154 PKVEQVLEVRSVDSI 1168
>gi|197131652|gb|ACH47344.1| RNA polymerase beta subunit [Pelargonium cotyledonis]
Length = 1363
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 41/85 (48%), Gaps = 21/85 (24%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGN--------KLVTFIYEKL 43
LKS Q+ IVQ A PGA HYG L+ G LVTFIYEK
Sbjct: 1073 LKSGQVFIVQVGYVIIRSAKPYLAIPGATVHGHYGEILYGGGYTSYIYGGTLVTFIYEKA 1132
Query: 44 RSCDLTRALSKVKQVLEIRSFDLIL 68
RS D+T+ L KV + E RS + L
Sbjct: 1133 RSADITQGLPKVDKAFEARSISMDL 1157
>gi|347810150|gb|AEP25215.1| RNA polymerase C2 [Halophytum ameghinoi]
Length = 1090
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 13/64 (20%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
KS Q+LI+Q ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1027 QFKSGQVLILQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1086
Query: 51 ALSK 54
L K
Sbjct: 1087 GLPK 1090
>gi|308096595|gb|ADO13871.1| RNA polymerase beta subunit [Forstera bidwillii]
Length = 342
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 13/59 (22%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
HLKS Q+LIVQ ATPGA YG L++G+ LVTF+YEK RS D+T
Sbjct: 284 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGRYGEILYEGDTLVTFVYEKSRSGDIT 342
>gi|146261531|gb|ABQ15075.1| RNA polymerase beta' subunit [Peridiscus lucidus]
Length = 828
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 39/77 (50%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG L++G LVT +
Sbjct: 615 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGATLVTXXXXXXXXXXXXQ 674
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 675 GLPKVEQVLEVRSIDSI 691
>gi|347810166|gb|AEP25222.1| RNA polymerase C2 [Phaulothamnus spinescens]
Length = 1133
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 13/61 (21%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
LKS Q+LIVQ ATPGA HYG +++G+ LVTFIYEK RS D+T+
Sbjct: 1073 QLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1132
Query: 51 A 51
Sbjct: 1133 G 1133
>gi|146261539|gb|ABQ15079.1| RNA polymerase beta' subunit [Micranthes integrifolia]
Length = 812
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q+LIVQ TPG + HYG L++G+ LVT
Sbjct: 601 HLKLKSGQVLIVQVDSIVIRSAKTYLGTPGTMVRAHYGEILYEGDTLVTXXXXXXXXXXX 660
Query: 49 TRALSKVKQVLEIRSFDLILACL 71
+ L KV+QVLE+RS D IL L
Sbjct: 661 XQGLPKVEQVLEVRSIDSILMNL 683
>gi|308096655|gb|ADO13885.1| RNA polymerase beta subunit [Nymphoides peltata]
Length = 1115
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 34/59 (57%), Gaps = 13/59 (22%)
Query: 4 HLKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
H KS Q+LIVQ TPGA HYG L++G+ LVTFIYEK RS D+T
Sbjct: 1057 HRKSGQVLIVQGDSVVIRSANPYLVTPGATVHGHYGEILYEGDTLVTFIYEKSRSGDIT 1115
>gi|335352805|gb|AEH42625.1| RNA polymerase beta subunit [Drypetes roxburghii]
Length = 1326
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQATPGAISFR-------------HYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q++IV A I HYG L +G+ L ++IYEK S D+T+
Sbjct: 1042 HLKSGQVIIVYADSVVIRLAKPYLVTSDTTFHCHYGQILSEGDPLFSYIYEKSSSNDITQ 1101
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV +++E+RS D I
Sbjct: 1102 GLPKVDKMVEVRSIDSI 1118
>gi|124302895|ref|YP_001023690.1| RNA polymerase beta'' subunit [Angiopteris evecta]
gi|212276951|sp|A2T322.1|RPOC2_ANGEV RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|110628293|gb|ABG79589.1| RNA polymerase beta'' subunit [Angiopteris evecta]
Length = 1414
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT GA +YG L +G+ L+T IYE+LRS D+ + L KV+Q+LE RS + +
Sbjct: 1132 ATKGATVHSNYGDILKEGDTLITLIYERLRSGDIIQGLPKVEQLLEARSINSV 1184
>gi|408900027|gb|AFU94809.1| RpoC2, partial (chloroplast) [Drypetes roxburghii]
Length = 1598
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 13/79 (16%)
Query: 2 HTHLKSDQILIVQATPGAISFR-------------HYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++IV A I HYG L +G+ L ++IYEK S D+
Sbjct: 1293 HXXLKSGQVIIVYADSVVIRLAKPYLVTSDTTFHCHYGQILSEGDPLFSYIYEKSSSNDI 1352
Query: 49 TRALSKVKQVLEIRSFDLI 67
T+ L KV +++E+RS D I
Sbjct: 1353 TQGLPKVDKMVEVRSIDSI 1371
>gi|392283458|gb|AFM54210.1| RpoC2 (chloroplast) [Ceratozamia hildae]
Length = 1373
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT A HYG +H+G+ L+T IYE+ +S D+ + L KV+Q+LE RS I
Sbjct: 1103 ATRRATVHGHYGEIIHEGDTLITLIYERFKSGDIIQGLPKVEQLLEARSISSI 1155
>gi|347810191|gb|AEP25234.1| RNA polymerase C2 [Triphyophyllum peltatum]
Length = 1142
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 13/65 (20%)
Query: 3 THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
T+LKS QILIVQ A P A HYG +++G+ LVTF+YEK RS D+T
Sbjct: 1078 TNLKSGQILIVQVNSVVIRSAKPYLAIPEATVHGHYGEIIYEGDPLVTFLYEKSRSGDIT 1137
Query: 50 RALSK 54
+ SK
Sbjct: 1138 QVPSK 1142
>gi|28202151|ref|NP_777392.1| RNA polymerase beta'' subunit [Anthoceros formosae]
gi|41017987|sp|Q85C71.1|RPOC2_ANTFO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|27807853|dbj|BAC55328.1| RNA polymerase beta'' subunit (chloroplast) [Anthoceros formosae]
gi|27807949|dbj|BAC55419.1| RNA polymerase beta'' subunit [Anthoceros formosae]
Length = 1445
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFD 65
AT GA HYG + KG+ L+T +YE+L+S D+ + L KV+Q+LE R +
Sbjct: 1159 ATGGATIHSHYGQIIKKGDVLITLVYERLKSGDIIQGLPKVEQLLEARPIN 1209
>gi|347810188|gb|AEP25233.1| RNA polymerase C2 [Tamarix pentandra]
Length = 1093
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 5 LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
LK+ QILIVQ ATPGA HYG L KG+ LVTFIYEK RS D+
Sbjct: 1037 LKAGQILIVQIDSLVLRSAKPYLATPGATVHGHYGEILDKGDTLVTFIYEKSRSGDI 1093
>gi|456330980|ref|YP_007476341.1| RpoC2 (chloroplast) [Trithuria inconspicua]
gi|449713831|emb|CCJ32507.1| RpoC2 (chloroplast) [Trithuria inconspicua]
Length = 1371
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 8 DQILIVQATP-----GAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
D +I A P GA YG L +G+ LVTFIYEK RS D+T+ L KV ++ E R
Sbjct: 1109 DSFIIRLAKPYLVPRGATVHVGYGEILSQGDTLVTFIYEKSRSSDITQGLPKVDELFEGR 1168
Query: 63 SFDLI 67
S D I
Sbjct: 1169 SVDSI 1173
>gi|222139885|ref|YP_002519952.1| RNA polymerase beta subunit-2 (chloroplast) [Ephedra equisetina]
gi|220983553|dbj|BAH11320.1| RNA polymerase beta subunit-2 (chloroplast) [Ephedra equisetina]
Length = 1231
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLILACL 71
ATP + +Y +++GN L+T++YE+ +S D+TR L KV+Q LE S + ++ L
Sbjct: 983 ATPKSTIHGNYAEMINQGNSLITYLYERFQSSDITRGLPKVEQFLEAHSKNPVVQSL 1039
>gi|90403863|gb|ABD93825.1| RNA polymerase beta chain [Najas gracillima]
Length = 811
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLE 60
TPG HYG L+ G+ LVTF+Y K RS D+T+ L KV++VLE
Sbjct: 608 TPGTTVHGHYGQILYGGDTLVTFLYGKSRSGDITQGLPKVERVLE 652
>gi|441018007|gb|AGC26783.1| DNA-directed RNA polymerase subunit beta' (chloroplast) [Psilotum
nudum]
Length = 1407
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT GA HYG L +G+ L+T YE+ +S D+ + L KV+Q+LE RS + +
Sbjct: 1125 ATKGATIHNHYGDLLREGDTLITLTYERFKSGDIIQGLPKVEQLLEARSVNAV 1177
>gi|357495555|ref|XP_003618066.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355519401|gb|AET01025.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 212
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 13/66 (19%)
Query: 2 HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H LKS Q++ +Q ATP A HYG L++G+ LVTFIYEK RS D+
Sbjct: 66 HLKLKSGQVITIQMDSVIIRSANPYLATPEATIHSHYGEILYQGDILVTFIYEKSRSGDI 125
Query: 49 TRALSK 54
T+A ++
Sbjct: 126 TQAWNE 131
>gi|126022796|ref|NP_569619.2| RNA polymerase beta'' subunit [Psilotum nudum]
Length = 1407
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT GA HYG L +G+ L+T YE+ +S D+ + L KV+Q+LE RS + +
Sbjct: 1125 ATKGATIHNHYGDLLREGDTLITLTYERFKSGDIIQGLPKVEQLLEARSVNAV 1177
>gi|41018090|sp|Q8WI26.1|RPOC2_PSINU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|18389454|dbj|BAB84206.1| RNA polymerase subunit beta'' [Psilotum nudum]
Length = 1408
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT GA HYG L +G+ L+T YE+ +S D+ + L KV+Q+LE RS + +
Sbjct: 1126 ATKGATIHNHYGDLLREGDTLITLTYERFKSGDIIQGLPKVEQLLEARSVNAV 1178
>gi|343482056|gb|AEM44890.1| RNA polymerase beta chain [Gaiadendron punctatum]
Length = 330
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 13/58 (22%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
H KS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK +S D+
Sbjct: 273 HKKSGQVLIVQISSVVIRAAQPYLATPGATVHGHYGEILYEGDTLVTFIYEKSKSGDI 330
>gi|11466681|ref|NP_039277.1| RNA polymerase beta'' subunit [Marchantia polymorpha]
gi|133444|sp|P06274.1|RPOC2_MARPO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|11650|emb|CAA28063.1| rpoC2 [Marchantia polymorpha]
Length = 1386
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT GA +YG F+ +G+ L+T IYE+L+S D+ + L KV+Q+LE R + +
Sbjct: 1102 ATGGATIHNNYGEFIKEGDTLITLIYERLKSGDIIQGLPKVEQLLEARPINSV 1154
>gi|347977246|dbj|BAK86740.1| RNA polymerase beta subunit-2 [Sciadopitys verticillata]
Length = 1218
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 42/62 (67%), Gaps = 6/62 (9%)
Query: 8 DQILIVQA------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEI 61
D+ L++++ TPGA ++ H G + +G+ L+T +YE+L+S D+ + L KV+++LE
Sbjct: 902 DESLVIRSAKPYLGTPGATAYGHCGELVFQGDTLITLLYERLKSDDIIQGLPKVEELLEA 961
Query: 62 RS 63
RS
Sbjct: 962 RS 963
>gi|90403923|gb|ABD93855.1| RNA polymerase beta chain [Passiflora suberosa]
Length = 773
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 13/76 (17%)
Query: 5 LKSDQILIVQ--------ATPGAIS-----FRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
LKS Q++IV A P ++ +++YG +++G+ L +F+YEK +S D+T+
Sbjct: 550 LKSGQVIIVHVESIVLRSAKPYLVTSETKIYQNYGEIVYRGDPLFSFMYEKSKSSDITQG 609
Query: 52 LSKVKQVLEIRSFDLI 67
L KV+++LE+RS + I
Sbjct: 610 LPKVERMLEVRSINSI 625
>gi|308096589|gb|ADO13870.1| RNA polymerase beta subunit [Gonocaryum litorale]
Length = 1123
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 34/59 (57%), Gaps = 13/59 (22%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
HLKS Q+LIVQ AT A HYG L++G+ LVTFIYEK RS D+T
Sbjct: 1065 HLKSGQVLIVQVDFVVIRPAKPYLATQKATVHGHYGEILYEGDTLVTFIYEKARSGDIT 1123
>gi|350529119|dbj|BAL03678.1| RNA polymerase beta subunit-2 [Bowenia serrulata]
Length = 1366
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT A HYG +H+G+ L+T IYEK +S D+ + L KV+Q+ E RS I
Sbjct: 1096 ATRRATVHGHYGEIIHEGDTLITLIYEKFKSGDIIQGLPKVEQLSEARSISSI 1148
>gi|359751535|gb|AEV58329.1| RNA polymerase beta [Equisetum arvense]
Length = 1373
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
T GAI ++YG +G+ L+T YE+L+S D+ + L KV+Q+LE RS + I
Sbjct: 1129 TEGAIVHKNYGDIFREGDTLITLTYERLKSGDIIQGLPKVEQLLEARSPNPI 1180
>gi|347810153|gb|AEP25216.1| RNA polymerase C2 [Limeum africanum]
Length = 1128
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 13/58 (22%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
HLK+ Q+L VQ ATPGA HYG +++G+ LVTFIYEK RS D+
Sbjct: 1071 HLKAGQVLSVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDI 1128
>gi|392283460|gb|AFM54211.1| RpoC2 (chloroplast) [Zamia furfuracea]
Length = 1372
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT A HYG +H+G+ L+T IYE+ +S D+ + L KV+Q+ E RS I
Sbjct: 1102 ATRRATVHGHYGEIIHEGDTLITLIYERFKSGDIIQGLPKVEQLSEARSISSI 1154
>gi|308096657|gb|ADO13886.1| RNA polymerase beta subunit [Moschopsis rosulata]
Length = 1108
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 13/52 (25%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEK 42
H+KS Q+LIVQ ATPGA HYG L++G+ LVTFIYEK
Sbjct: 1057 HVKSGQVLIVQVDYVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEK 1108
>gi|352951058|ref|YP_004891485.1| RNA polymerase beta subunit-2 (chloroplast) [Taiwania
cryptomerioides]
gi|347977388|dbj|BAK86819.1| RNA polymerase beta subunit-2 (chloroplast) [Taiwania
cryptomerioides]
Length = 1024
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
T GA HYG L+KG+ L+T +YE+L+S D+ + L KV+Q+ E RS
Sbjct: 722 GTRGATLNSHYGKILYKGDTLITLLYERLKSDDIIQGLPKVEQLSEARS 770
>gi|443329627|ref|YP_007374705.1| DNA-directed RNA polymerase subunit beta'' (chloroplast) [Equisetum
hyemale]
gi|441017818|gb|AGC26618.1| DNA-directed RNA polymerase subunit beta'' (chloroplast) [Equisetum
hyemale]
Length = 1387
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
+ G I ++YGA +G+ L+T YE+L+S D+ + L KV+Q+LE RS
Sbjct: 1129 SEGTIVHKNYGAIFREGDTLITLTYERLKSSDIIQGLPKVEQLLEARS 1176
>gi|313183941|ref|YP_004021795.1| RNA polymerase beta' subunit [Equisetum arvense]
gi|281371661|gb|ADA63594.1| RNA polymerase beta' subunit (chloroplast) [Equisetum arvense]
Length = 1373
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
T GAI ++YG +G+ L+T YE+L+S D+ + L KV+Q+LE RS
Sbjct: 1129 TEGAIVHKNYGDIFREGDTLITLTYERLKSGDIIQGLPKVEQLLEARS 1176
>gi|383930567|ref|YP_005352937.1| rpoC2 gene product (chloroplast) [Mankyua chejuensis]
gi|325975833|gb|ADZ47969.1| RNA polymerase beta' subunit [Mankyua chejuensis]
Length = 1420
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT GA H G + +G+ L+T YE+LRS D+ + L KV+Q+LE R +L+
Sbjct: 1139 ATEGATIHSHSGDIIKEGDTLITLTYERLRSGDIIQGLPKVEQLLEARPTNLV 1191
>gi|41017897|sp|P60290.1|RPOC2_PHYPA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|34494804|dbj|BAC85071.1| RNA polymerase beta'' subunit [Physcomitrella patens subsp. patens]
Length = 1330
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT GAI +YG + +G+ L+T IYE+L+S D+ + L KV+Q+LE R
Sbjct: 1060 ATGGAIIHNNYGEIVKEGDILITLIYERLKSGDIIQGLPKVEQLLEAR 1107
>gi|126021017|ref|NP_904221.2| RNA polymerase beta'' subunit [Physcomitrella patens subsp. patens]
Length = 1336
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT GAI +YG + +G+ L+T IYE+L+S D+ + L KV+Q+LE R
Sbjct: 1066 ATGGAIIHNNYGEIVKEGDILITLIYERLKSGDIIQGLPKVEQLLEAR 1113
>gi|443267217|ref|YP_007374789.1| DNA-directed RNA polymerase subunit beta'' (chloroplast)
[Ophioglossum californicum]
gi|441017918|gb|AGC26702.1| DNA-directed RNA polymerase subunit beta'' (chloroplast)
[Ophioglossum californicum]
Length = 1412
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT GA HYG L +G+ L+T YE+ +S D+ + L KV+Q+LE R
Sbjct: 1132 ATEGATVHSHYGNTLKEGDTLITLTYERFKSGDIIQGLPKVEQLLEAR 1179
>gi|257042525|gb|ACV32799.1| RNA polymerase beta'' chain [Pinus monticola]
Length = 1209
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356999352|gb|AET47231.1| RNA polymerase beta chain (chloroplast) [Pinus morrisonicola]
Length = 1209
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|357001541|gb|AET49390.1| RNA polymerase beta chain (chloroplast) [Pinus fenzeliana var.
dabeshanensis]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356998336|gb|AET46229.1| RNA polymerase beta chain (chloroplast) [Pinus pumila]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356997681|gb|AET45583.1| RNA polymerase beta chain (chloroplast) [Pinus strobiformis]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356997318|gb|AET45225.1| RNA polymerase beta chain (chloroplast) [Pinus wallichiana]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356997031|gb|AET44942.1| RNA polymerase beta chain (chloroplast) [Pinus amamiana]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356996814|gb|AET44728.1| RNA polymerase beta chain (chloroplast) [Pinus bungeana]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356996595|gb|AET44512.1| RNA polymerase beta chain (chloroplast) [Pinus chiapensis]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|257042725|gb|ACV32992.1| RNA polymerase beta'' chain [Pinus monticola]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|257042697|gb|ACV32965.1| RNA polymerase beta'' chain [Pinus monticola]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|257042640|gb|ACV32910.1| RNA polymerase beta'' chain [Pinus monticola]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|257042612|gb|ACV32883.1| RNA polymerase beta'' chain [Pinus monticola]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|257042582|gb|ACV32854.1| RNA polymerase beta'' chain [Pinus monticola]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228017628|gb|ACP52441.1| RNA polymerase beta'' chain [Pinus peuce]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228017564|gb|ACP52378.1| RNA polymerase beta'' chain [Pinus parviflora var. pentaphylla]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228017308|gb|ACP52126.1| RNA polymerase beta'' chain [Pinus lambertiana]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228017242|gb|ACP52061.1| RNA polymerase beta'' chain [Pinus flexilis]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228017121|gb|ACP51942.1| RNA polymerase beta'' chain [Pinus cembra]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228016874|gb|ACP51699.1| RNA polymerase beta'' chain [Pinus ayacahuite]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228016751|gb|ACP51578.1| RNA polymerase beta'' chain [Pinus armandii]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228016618|gb|ACP51447.1| RNA polymerase beta'' chain [Pinus albicaulis]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228016177|gb|ACP51013.1| RNA polymerase beta'' chain [Pinus squamata]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|29565574|ref|NP_817153.1| RNA polymerase beta'' chain [Pinus koraiensis]
gi|41017993|sp|Q85X62.1|RPOC2_PINKO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|29469673|gb|AAO74001.1| RNA polymerase beta subunit [Pinus koraiensis]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356997246|gb|AET45154.1| RNA polymerase beta chain (chloroplast) [Pinus kwangtungensis]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|257042668|gb|ACV32937.1| RNA polymerase beta'' chain [Pinus monticola]
Length = 1209
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|357001469|gb|AET49319.1| RNA polymerase beta chain (chloroplast) [Pinus dalatensis]
Length = 1209
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|324986353|ref|YP_004276225.1| RNA polymerase beta'' chain [Pinus lambertiana]
gi|323514202|gb|ADX89749.1| RNA polymerase beta'' chain [Pinus lambertiana]
Length = 1209
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|257042752|gb|ACV33018.1| RNA polymerase beta'' chain [Pinus monticola]
Length = 1209
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228017501|gb|ACP52316.1| RNA polymerase beta'' chain [Pinus monticola]
Length = 1209
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|237688654|ref|YP_002905270.1| RNA polymerase beta'' chain [Pinus krempfii]
gi|226951112|gb|ACO94175.1| RNA polymerase beta'' chain [Pinus krempfii]
Length = 1207
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228016120|gb|ACP50957.1| RNA polymerase beta'' chain [Pinus sibirica]
Length = 1209
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|357001610|gb|AET49458.1| RNA polymerase beta chain (chloroplast) [Pinus culminicola]
Length = 1207
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|257042780|gb|ACV33045.1| RNA polymerase beta'' chain [Pinus monticola]
Length = 1209
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|257042554|gb|ACV32827.1| RNA polymerase beta'' chain [Pinus monticola]
Length = 742
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 468 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 515
>gi|237688586|ref|YP_002905203.1| RNA polymerase beta'' chain [Pinus gerardiana]
gi|226876047|gb|ACO89303.1| RNA polymerase beta'' chain [Pinus gerardiana]
Length = 1209
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|357000882|gb|AET48740.1| RNA polymerase beta chain (chloroplast) [Pinus edulis]
Length = 1207
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356998769|gb|AET46656.1| RNA polymerase beta chain (chloroplast) [Pinus pinceana]
Length = 1209
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356998190|gb|AET46085.1| RNA polymerase beta chain (chloroplast) [Pinus quadrifolia]
Length = 1207
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356998044|gb|AET45941.1| RNA polymerase beta chain (chloroplast) [Pinus remota]
Length = 1207
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|356996668|gb|AET44584.1| RNA polymerase beta chain (chloroplast) [Pinus cembroides]
gi|356999497|gb|AET47374.1| RNA polymerase beta chain (chloroplast) [Pinus maximartinezii]
gi|357000081|gb|AET47950.1| RNA polymerase beta chain (chloroplast) [Pinus johannis]
gi|357001177|gb|AET49031.1| RNA polymerase beta chain (chloroplast) [Pinus discolor]
Length = 1207
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|324986496|ref|YP_004276366.1| RNA polymerase beta'' chain [Pinus nelsonii]
gi|323522684|gb|ADX94932.1| RNA polymerase beta'' chain [Pinus nelsonii]
Length = 1209
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228016242|gb|ACP51077.1| RNA polymerase beta'' chain [Pinus strobus]
Length = 1209
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|324986425|ref|YP_004276296.1| RNA polymerase beta'' chain [Pinus monophylla]
gi|323522520|gb|ADX94862.1| RNA polymerase beta'' chain [Pinus monophylla]
Length = 1207
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228016685|gb|ACP51513.1| RNA polymerase beta'' chain [Pinus aristata]
Length = 1211
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|228016056|gb|ACP50894.1| RNA polymerase beta'' chain [Pinus rzedowskii]
Length = 1209
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 935 ATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 982
>gi|347977370|dbj|BAK86802.1| RNA polymerase beta subunit-2 [Agathis dammara]
Length = 1204
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
D KS QIL+V T GA HYG +++G+ L+T +YE+L + D
Sbjct: 899 DEPFPKSGQILVVHEESLVMRLAKPYLGTGGATVHSHYGEIIYEGDTLITLLYERLTTDD 958
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+ + L K++Q+ E RS + I
Sbjct: 959 IIQGLPKIEQLSEARSTNSI 978
>gi|354991321|gb|AER45534.1| rpoC2 (chloroplast) [Agathis australis]
Length = 1198
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
D KS QIL+V T GA HYG +++G+ L+T +YE+L + D
Sbjct: 893 DEPFPKSGQILVVHEESLVMRLAKPYLGTGGATVHSHYGEIIYEGDTLITLLYERLTTDD 952
Query: 48 LTRALSKVKQVLEIRSFDLI 67
+ + L K++Q+ E RS + I
Sbjct: 953 IIQGLPKIEQLSEARSTNSI 972
>gi|7524613|ref|NP_042367.1| RNA polymerase beta'' chain [Pinus thunbergii]
gi|1710674|sp|P41606.2|RPOC2_PINTH RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|1262607|dbj|BAA04325.1| RNA polymerase beta'' subunit [Pinus thunbergii]
gi|357000227|gb|AET48094.1| RNA polymerase beta chain (chloroplast) [Pinus hwangshanensis]
gi|357000663|gb|AET48524.1| RNA polymerase beta chain (chloroplast) [Pinus fragilissima]
Length = 1224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGKILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|356997608|gb|AET45511.1| RNA polymerase beta chain (chloroplast) [Pinus sylvestris]
Length = 1222
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|357000154|gb|AET48022.1| RNA polymerase beta chain (chloroplast) [Pinus jeffreyi]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|356999935|gb|AET47806.1| RNA polymerase beta chain (chloroplast) [Pinus latteri]
Length = 1224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|356999279|gb|AET47159.1| RNA polymerase beta chain (chloroplast) [Pinus mugo]
Length = 1228
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|357001323|gb|AET49175.1| RNA polymerase beta chain (chloroplast) [Pinus densata]
Length = 1226
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 951 ATRKATVHSHYGKILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 998
>gi|357000008|gb|AET47878.1| RNA polymerase beta chain (chloroplast) [Pinus kesiya]
Length = 1224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGKILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|356997535|gb|AET45439.1| RNA polymerase beta chain (chloroplast) [Pinus taiwanensis]
Length = 1224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGKILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|228017694|gb|ACP52506.1| RNA polymerase beta'' chain [Pinus pinaster]
Length = 1228
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 951 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 998
>gi|228017443|gb|ACP52259.1| RNA polymerase beta'' chain [Pinus merkusii]
Length = 1224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|357001829|gb|AET49674.1| RNA polymerase beta chain (chloroplast) [Pinus arizonica var.
cooperi]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|357001756|gb|AET49602.1| RNA polymerase beta chain (chloroplast) [Pinus coulteri]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|357001396|gb|AET49247.1| RNA polymerase beta chain (chloroplast) [Pinus densiflora]
Length = 1228
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|357001250|gb|AET49103.1| RNA polymerase beta chain (chloroplast) [Pinus devoniana]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|357001029|gb|AET48885.1| RNA polymerase beta chain (chloroplast) [Pinus douglasiana]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|357000736|gb|AET48596.1| RNA polymerase beta chain (chloroplast) [Pinus engelmannii]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|357000372|gb|AET48237.1| RNA polymerase beta chain (chloroplast) [Pinus hartwegii]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|356999134|gb|AET47016.1| RNA polymerase beta chain (chloroplast) [Pinus nigra]
Length = 1224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|356998406|gb|AET46298.1| RNA polymerase beta chain, partial (chloroplast) [Pinus
pseudostrobus]
Length = 1219
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 944 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 991
>gi|356997898|gb|AET45797.1| RNA polymerase beta chain (chloroplast) [Pinus roxburghii]
Length = 1224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|356997826|gb|AET45726.1| RNA polymerase beta chain (chloroplast) [Pinus sabiniana]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|356996958|gb|AET44870.1| RNA polymerase beta chain (chloroplast) [Pinus arizonica]
gi|356998550|gb|AET46440.1| RNA polymerase beta chain (chloroplast) [Pinus ponderosa var.
scopulorum]
gi|356999061|gb|AET46944.1| RNA polymerase beta chain (chloroplast) [Pinus pseudostrobus var.
apulcensis]
gi|356999424|gb|AET47302.1| RNA polymerase beta chain (chloroplast) [Pinus montezumae]
gi|357001104|gb|AET48959.1| RNA polymerase beta chain (chloroplast) [Pinus hartwegii]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|228017002|gb|ACP51825.1| RNA polymerase beta'' chain [Pinus canariensis]
Length = 1224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|228016503|gb|ACP51334.1| RNA polymerase beta'' chain [Pinus torreyana subsp. torreyana]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|228016439|gb|ACP51271.1| RNA polymerase beta'' chain [Pinus torreyana subsp. insularis]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|228015919|gb|ACP50759.1| RNA polymerase beta'' chain [Pinus ponderosa]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|228016372|gb|ACP51205.1| RNA polymerase beta'' chain [Pinus thunbergii]
Length = 1224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGKILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|357001902|gb|AET49746.1| RNA polymerase beta chain (chloroplast) [Pinus clausa]
Length = 1222
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|357000809|gb|AET48668.1| RNA polymerase beta chain (chloroplast) [Pinus elliottii]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|357000300|gb|AET48166.1| RNA polymerase beta chain (chloroplast) [Pinus heldreichii]
Length = 1224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|356999570|gb|AET47446.1| RNA polymerase beta chain (chloroplast) [Pinus massoniana]
Length = 1229
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|356998623|gb|AET46512.1| RNA polymerase beta chain (chloroplast) [Pinus ponderosa var.
benthamiana]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|356997753|gb|AET45654.1| RNA polymerase beta chain (chloroplast) [Pinus serotina]
Length = 1220
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|356996886|gb|AET44799.1| RNA polymerase beta chain (chloroplast) [Pinus brutia]
Length = 1222
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 947 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 994
>gi|228016938|gb|ACP51762.1| RNA polymerase beta'' chain [Pinus banksiana]
Length = 1222
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|228015988|gb|ACP50827.1| RNA polymerase beta'' chain [Pinus resinosa]
Length = 1224
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|237688517|ref|YP_002905135.1| RNA polymerase beta'' chain [Pinus contorta]
gi|226875346|gb|ACO89084.1| RNA polymerase beta'' chain [Pinus contorta]
Length = 1222
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|356998478|gb|AET46369.1| RNA polymerase beta chain (chloroplast) [Pseudotsuga menziesii var.
menziesii]
Length = 1220
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG + KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 948 ATRKATVHGHYGEIIDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 995
>gi|356997971|gb|AET45869.1| RNA polymerase beta chain (chloroplast) [Pinus rigida]
gi|356998263|gb|AET46157.1| RNA polymerase beta chain (chloroplast) [Pinus pungens]
Length = 1220
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|228017180|gb|ACP52000.1| RNA polymerase beta'' chain [Pinus leiophylla var. chihuahuana]
gi|356996523|gb|AET44441.1| RNA polymerase beta chain (chloroplast) [Pinus leiophylla var.
chihuahuana]
Length = 1220
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|356996741|gb|AET44656.1| RNA polymerase beta chain (chloroplast) [Pinus caribaea]
gi|356998117|gb|AET46013.1| RNA polymerase beta chain (chloroplast) [Pinus radiata]
gi|356998842|gb|AET46728.1| RNA polymerase beta chain (chloroplast) [Pinus patula]
gi|356998915|gb|AET46800.1| RNA polymerase beta chain (chloroplast) [Pinus palustris]
gi|356998988|gb|AET46872.1| RNA polymerase beta chain (chloroplast) [Pinus occidentalis]
gi|356999643|gb|AET47518.1| RNA polymerase beta chain (chloroplast) [Pinus lumholtzii]
gi|356999716|gb|AET47590.1| RNA polymerase beta chain (chloroplast) [Pinus leiophylla]
gi|356999789|gb|AET47662.1| RNA polymerase beta chain (chloroplast) [Pinus lawsonii]
gi|357000517|gb|AET48380.1| RNA polymerase beta chain (chloroplast) [Pinus greggii]
gi|357001683|gb|AET49530.1| RNA polymerase beta chain (chloroplast) [Pinus cubensis]
Length = 1220
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|228016301|gb|ACP51135.1| RNA polymerase beta'' chain [Pinus taeda]
Length = 1220
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|357000955|gb|AET48812.1| RNA polymerase beta chain (chloroplast) [Pinus echinata]
Length = 1220
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|357000445|gb|AET48309.1| RNA polymerase beta chain (chloroplast) [Pinus halepensis]
Length = 1222
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 947 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 994
>gi|356999862|gb|AET47734.1| RNA polymerase beta chain (chloroplast) [Pinus pringlei]
Length = 1220
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|351653810|ref|YP_004891426.1| RNA polymerase beta subunit-2 (chloroplast) [Pseudotsuga sinensis
var. wilsoniana]
gi|307683483|dbj|BAJ19720.1| RNA polymerase beta subunit-2 [Pseudotsuga sinensis var. wilsoniana]
gi|347977644|dbj|BAK86599.1| RNA polymerase beta subunit-2 [Pseudotsuga sinensis var. wilsoniana]
Length = 1242
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG + KG+ L+T IYE+L+S D+ + L KV+Q+ E R
Sbjct: 970 ATRKATVHGHYGEIIDKGDTLITLIYERLKSSDIIQGLPKVEQLSEAR 1017
>gi|228016814|gb|ACP51640.1| RNA polymerase beta'' chain [Pinus attenuata]
Length = 1220
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|356997462|gb|AET45367.1| RNA polymerase beta chain (chloroplast) [Pinus tropicalis]
Length = 1224
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|356997390|gb|AET45296.1| RNA polymerase beta chain (chloroplast) [Pinus virginiana]
Length = 1222
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|356999207|gb|AET47088.1| RNA polymerase beta chain (chloroplast) [Pinus muricata]
Length = 1220
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 992
>gi|90403849|gb|ABD93818.1| RNA polymerase beta chain [Ginkgo biloba]
Length = 769
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT A HYG FL +G+ L+T IYE+ +S D + L KV+Q+ E RS + I
Sbjct: 600 ATRRAAVHGHYGEFLDEGDTLITLIYERSKSGDTIQGLPKVEQLSEARSINPI 652
>gi|223931094|ref|YP_002586956.1| RNA polymerase beta' subunit (chloroplast) [Syntrichia ruralis]
gi|219562308|gb|ACL27639.1| RNA polymerase beta' subunit (chloroplast) [Syntrichia ruralis]
Length = 1358
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT GA +YG + +G+ L+T +YE+L+S D+ + L KV+Q+LE R + +
Sbjct: 1082 ATDGATIHNNYGEIVKEGDTLITLVYERLKSGDIIQGLPKVEQLLEARPINSV 1134
>gi|90403887|gb|ABD93837.1| RNA polymerase beta chain [Cycas revoluta]
Length = 793
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT A HYG +++G+ L+T IYE+ +S D+ + L KV+Q+ E RS + I
Sbjct: 624 ATRRATVHGHYGEIINEGDTLITLIYERFKSGDIIQGLPKVEQLSEARSINSI 676
>gi|150251449|ref|YP_001312182.1| RNA polymerase beta subunit-2 [Cycas taitungensis]
gi|212288316|sp|A6H5F7.1|RPOC2_CYCTA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|149941499|dbj|BAF64923.1| RNA polymerase beta subunit-2 (chloroplast) [Cycas taitungensis]
Length = 1339
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT A HYG +++G+ L+T IYE+ +S D+ + L KV+Q+ E RS + I
Sbjct: 1101 ATRRATVHGHYGEIINEGDTLITLIYERFKSGDIIQGLPKVEQLSEARSINSI 1153
>gi|352950890|ref|YP_004891194.1| RNA polymerase beta subunit-2 (chloroplast) [Larix decidua]
gi|307683577|dbj|BAJ19767.1| RNA polymerase beta subunit-2 [Larix decidua]
gi|347977545|dbj|BAK86501.1| RNA polymerase beta subunit-2 (chloroplast) [Larix decidua]
Length = 1222
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 950 ATRKATVHGHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 997
>gi|228017374|gb|ACP52191.1| RNA polymerase beta'' chain [Larix occidentalis]
Length = 1222
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 950 ATRKATVHGHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 997
>gi|452848990|ref|YP_007474669.1| RNA polymerase beta subunit-2 (chloroplast) [Cycas revoluta]
gi|372863145|gb|AEX99218.1| RNA polymerase beta subunit-2 (chloroplast) [Cycas revoluta]
Length = 1371
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT A HYG +++G+ L+T IYE+ +S D+ + L KV+Q+ E RS + I
Sbjct: 1101 ATRRATVHGHYGEIINEGDTLITLIYERFKSGDIIQGLPKVEQLSEARSINSI 1153
>gi|156598061|gb|ABU85296.1| RNA polymerase beta subunit [Cycas micronesica]
Length = 1351
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT A HYG +++G+ L+T IYE+ +S D+ + L KV+Q+ E RS + I
Sbjct: 1095 ATRRATVHGHYGEIINEGDTLITLIYERFKSGDIIQGLPKVEQLSEARSINSI 1147
>gi|69216855|gb|AAZ03980.1| RNA polymerase beta'' chain [Ginkgo biloba]
gi|380356160|dbj|BAL72582.1| RNA polymerase beta subunit-2 (chloroplast) [Ginkgo biloba]
Length = 1375
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT A HYG FL +G+ L+T IYE+ +S D + L KV+Q+ E RS + I
Sbjct: 1095 ATRRAAVHGHYGEFLDEGDTLITLIYERSKSGDTIQGLPKVEQLSEARSINPI 1147
>gi|380448693|ref|YP_005352697.1| rpoC2 gene product (chloroplast) [Ginkgo biloba]
gi|350996593|gb|AEQ37103.1| RNA polymerase beta subunit-2 (chloroplast) [Ginkgo biloba]
gi|372862328|gb|AEX98410.1| RNA polymerase beta subunit-2 (chloroplast) [Ginkgo biloba]
gi|372862751|gb|AEX98828.1| RNA polymerase beta subunit-2 (chloroplast) [Ginkgo biloba]
gi|372862920|gb|AEX98995.1| RNA polymerase beta subunit-2 (chloroplast) [Ginkgo biloba]
Length = 1369
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 33/53 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT A HYG FL +G+ L+T IYE+ +S D + L KV+Q+ E RS + I
Sbjct: 1089 ATRRAAVHGHYGEFLDEGDTLITLIYERSKSGDTIQGLPKVEQLSEARSINPI 1141
>gi|228017067|gb|ACP51889.1| RNA polymerase beta'' chain [Cedrus deodara]
Length = 1214
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 944 ATRKATVHGHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 991
>gi|222084085|ref|YP_002519538.1| RNA polymerase beta subunit-2 [Keteleeria davidiana]
gi|220983637|dbj|BAH11403.1| RNA polymerase beta subunit-2 (chloroplast) [Keteleeria davidiana]
Length = 1222
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 950 ATRKATVHGHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 997
>gi|309322335|ref|YP_003934186.1| RNA polymerase beta subunit-2 [Cedrus deodara]
gi|307683261|dbj|BAJ19569.1| RNA polymerase beta subunit-2 (chloroplast) [Cedrus deodara]
Length = 1216
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 944 ATRKATVHGHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 991
>gi|228016562|gb|ACP51392.1| RNA polymerase beta'' chain [Abies firma]
Length = 1218
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 946 ATRKATVHGHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 993
>gi|169142781|ref|YP_001687206.1| RNA polymerase beta' subunit [Aneura mirabilis]
gi|212288315|sp|B0YPM0.1|RPOC2_ANEMR RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|153973807|gb|ABS54467.1| RNA polymerase beta' subunit [Aneura mirabilis]
Length = 1376
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
A GAI + G + +G+ L+T IYE+L+S D+ + L KV+Q+LE RS
Sbjct: 1095 ANEGAIIHNNCGGSVEEGDTLITLIYERLKSGDIIQGLPKVEQLLEARS 1143
>gi|30352024|ref|NP_848050.1| RNA polymerase beta'' chain [Adiantum capillus-veneris]
Length = 1420
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
D T +S Q++ + AT GA + G L +G+ L+T Y++L+S D
Sbjct: 1109 DRTCFQSGQVMAIHQDYSLVRTGKTFLATRGANPHKSSGDILEEGDTLITLPYDRLKSGD 1168
Query: 48 LTRALSKVKQVLEIRSFDLILA 69
+T+ L KV+Q+LE RS I A
Sbjct: 1169 ITQGLPKVEQLLESRSIASISA 1190
>gi|56757671|sp|Q85FM9.2|RPOC2_ADICA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|48475991|gb|AAP29382.2| RNA polymerase beta'' chain (chloroplast) [Adiantum capillus-veneris]
Length = 1420
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 1 DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
D T +S Q++ + AT GA + G L +G+ L+T Y++L+S D
Sbjct: 1109 DRTCFQSGQVMAIHQDYSLVRTGKTFLATRGANPHKSSGDILEEGDTLITLPYDRLKSGD 1168
Query: 48 LTRALSKVKQVLEIRSFDLILA 69
+T+ L KV+Q+LE RS I A
Sbjct: 1169 ITQGLPKVEQLLESRSIASISA 1190
>gi|309322406|ref|YP_003934486.1| RNA polymerase beta subunit-2 [Cathaya argyrophylla]
gi|307683332|dbj|BAJ19639.1| RNA polymerase beta subunit-2 (chloroplast) [Cathaya argyrophylla]
Length = 1223
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 949 ATRKATVHGHYGEILDKGDILITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|356998696|gb|AET46584.1| RNA polymerase beta chain (chloroplast) [Pinus pinea]
Length = 1224
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
T A HYG L KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 950 TRKATVHSHYGEILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 996
>gi|237688454|ref|YP_002905073.1| RNA polymerase beta'' chain [Picea sitchensis]
gi|226875283|gb|ACO89022.1| RNA polymerase beta'' chain [Picea sitchensis]
Length = 1218
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG + KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 946 ATRKATVHGHYGEIIDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 993
>gi|353351866|ref|YP_004891748.1| RNA polymerase beta subunit-2 (chloroplast) [Picea morrisonicola]
gi|307683671|dbj|BAJ19814.1| RNA polymerase beta subunit-2 [Picea morrisonicola]
gi|347977529|dbj|BAK86486.1| RNA polymerase beta subunit-2 (chloroplast) [Picea morrisonicola]
Length = 1218
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG + KG+ L+T IYE+ +S D+ + L KV+Q+ E R
Sbjct: 946 ATRKATVHGHYGEIIDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR 993
>gi|428697668|ref|YP_007026119.1| RNA polymerase beta' subunit (chloroplast) [Pellia endiviifolia]
gi|408773082|gb|AFU88829.1| RNA polymerase beta' subunit (chloroplast) [Pellia endiviifolia]
Length = 1382
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT A + G F+ +G+ L+T IYE+L+S D+ + L K++Q+LE RS + +
Sbjct: 1102 ATGEATIHNNCGEFVQEGDTLITLIYERLKSGDIIQGLPKIEQLLEARSVNSV 1154
>gi|456061391|ref|YP_007475582.1| RpoC2 (chloroplast) [Podocarpus totara]
gi|354991323|gb|AER45535.1| rpoC2 (chloroplast) [Podocarpus totara]
gi|449020382|gb|AGE65878.1| RpoC2 (chloroplast) [Podocarpus totara]
Length = 1193
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
T GA HYG +++G+ L+T +YE+L + D+ + L K++Q+ E RS + I
Sbjct: 909 GTGGATVHSHYGEIIYEGDTLITLLYERLTTDDIIQGLPKIEQLSEARSTNSI 961
>gi|347977869|dbj|BAK86688.1| RNA polymerase beta subunit-2 [Nageia nagi]
Length = 1181
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
T GA HYG +++G+ L+T +YE+L + D+ + L K++Q+ E RS + I
Sbjct: 897 GTGGATVHSHYGEIIYEGDTLITLLYERLTTDDIIQGLPKIEQLSEARSTNSI 949
>gi|90403909|gb|ABD93848.1| RNA polymerase beta chain [Podocarpus macrophyllus]
Length = 670
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
T GA HYG +++G+ L+T +YE+L + D+ + L K++Q+ E RS + I
Sbjct: 462 GTGGATVHSHYGEIIYEGDTLITLLYERLTTDDIIQGLPKIEQLSEARSTNSI 514
>gi|452849129|ref|YP_007474806.1| RNA polymerase beta' subunit (chloroplast) [Taxus mairei]
gi|372863525|gb|AEX99593.1| RNA polymerase beta' subunit (chloroplast) [Taxus mairei]
Length = 1006
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
T GA YG +++GN L+T +YE+L+S D+ + L KV+Q+ E RS
Sbjct: 713 GTRGATLHGDYGKIIYEGNTLITLLYERLKSDDIIQGLPKVEQLSEARS 761
>gi|372863361|gb|AEX99431.1| RNA polymerase beta' subunit (chloroplast) [Taxus mairei]
Length = 1006
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
T GA YG +++GN L+T +YE+L+S D+ + L KV+Q+ E RS
Sbjct: 713 GTRGATLHGDYGKIIYEGNTLITLLYERLKSDDIIQGLPKVEQLSEARS 761
>gi|372863284|gb|AEX99355.1| RNA polymerase beta' subunit (chloroplast) [Taxus mairei]
Length = 989
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
T GA YG +++GN L+T +YE+L+S D+ + L KV+Q+ E RS
Sbjct: 713 GTRGATLHGDYGKIIYEGNTLITLLYERLKSDDIIQGLPKVEQLSEARS 761
>gi|356997103|gb|AET45013.1| RNA polymerase beta chain (chloroplast) [Pinus yunnanensis]
Length = 1222
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T IYE+ +S D+ + KV+Q+ E R
Sbjct: 947 ATRKATVHSHYGKILDKGDTLITLIYERFKSSDIIQXXPKVEQLSEAR 994
>gi|90403889|gb|ABD93838.1| RNA polymerase beta chain [Welwitschia mirabilis]
Length = 796
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
ATP A ++ +++G+ L+TF YE+ +S D+T+ L KV+Q+ E +S
Sbjct: 598 ATPKATIHGNFAEIINQGDPLITFFYERFKSSDITQGLPKVEQLAEAQS 646
>gi|187763099|ref|YP_001876574.1| RNA polymerase beta' subunit [Welwitschia mirabilis]
gi|212288353|sp|B2Y1V7.1|RPOC2_WELMI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|163311629|gb|ABY26787.1| RNA polymerase beta' subunit [Welwitschia mirabilis]
gi|220983462|dbj|BAH11231.1| RNA polymerase beta subunit-2 (chloroplast) [Welwitschia mirabilis]
Length = 1297
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
ATP A ++ +++G+ L+TF YE+ +S D+T+ L KV+Q+ E +S
Sbjct: 1048 ATPKATIHGNFAEIINQGDPLITFFYERFKSSDITQGLPKVEQLAEAQS 1096
>gi|354991319|gb|AER45533.1| rpoC2 (chloroplast) [Halocarpus kirkii]
Length = 1101
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
T GA HYG +++G+ L+T +YE+L + D+ + L K++Q+ E RS + I
Sbjct: 816 GTGGATVHSHYGEIIYEGDILITLLYERLTTDDIIQGLPKIEQLSEARSTNSI 868
>gi|301353338|ref|YP_003795570.1| RNA polymerase beta subunit [Pteridium aquilinum subsp. aquilinum]
gi|301016256|gb|ADK47543.1| RNA polymerase beta subunit [Pteridium aquilinum subsp. aquilinum]
Length = 1422
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 1 DHTHLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLE 60
D++ +++ + L+ AT GAI + G + +G+ +T Y++L+S D+T+ L KV+Q+LE
Sbjct: 1127 DYSLVRTGKTLL--ATRGAIPHKISGDIIGEGDTSITLPYDRLKSGDITQGLPKVEQLLE 1184
Query: 61 IRSFDLILA 69
RS I A
Sbjct: 1185 SRSIASIPA 1193
>gi|357000590|gb|AET48452.1| RNA polymerase beta chain (chloroplast) [Pinus glabra]
Length = 1220
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
AT A HYG L KG+ L+T I E+ +S D+ + L KV+Q+ E R
Sbjct: 945 ATRKATVHSHYGEILDKGDTLITLIXERFKSSDIIQGLPKVEQLSEAR 992
>gi|308096637|gb|ADO13880.1| RNA polymerase beta subunit [Platysace lanceolata]
Length = 1120
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYE 41
H KS Q+LIVQ AT GA HYG L++GN LVTFIYE
Sbjct: 1070 HFKSGQVLIVQVDSVVIRSAKPYLATLGATVHGHYGEILYEGNTLVTFIYE 1120
>gi|172072927|ref|YP_001806688.1| RNA polymerase beta' subunit [Cryptomeria japonica]
gi|212277054|sp|B1VKH5.1|RPOC2_CRYJA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|171854946|dbj|BAG16686.1| RNA polymerase beta' subunit [Cryptomeria japonica]
gi|239794314|dbj|BAH73311.1| RNA polymerase beta' subunit [Cryptomeria japonica]
gi|239794397|dbj|BAH73393.1| RNA polymerase beta' subunit [Cryptomeria japonica]
Length = 1212
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 18 GAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
GA +YG L +G+ L+T +YE+L+S D+ + L KV+Q+ E RS
Sbjct: 895 GATLNSYYGKILSQGDTLITMLYERLKSDDIIQGLPKVEQLSEARS 940
>gi|222084191|ref|YP_002519785.1| RNA polymerase beta subunit-2 [Gnetum parvifolium]
gi|220983528|dbj|BAH11296.1| RNA polymerase beta subunit-2 (chloroplast) [Gnetum parvifolium]
Length = 1317
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
+TP A ++ +++G+ L+TF YE+ ++ D+T+ L KV+Q++E S
Sbjct: 1043 STPKATIHGNFAEIINQGDPLITFFYERFKASDITQGLPKVEQLVETHS 1091
>gi|308745990|ref|YP_003934548.1| RNA polymerase beta'' subunit [Cheilanthes lindheimeri]
gi|302375423|gb|ADL29797.1| RNA polymerase beta'' subunit [Cheilanthes lindheimeri]
Length = 1417
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 1 DHTHLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLE 60
+++ +++ + L+V T GA + G + +G+ L+T Y++L+S D+T+ L KV+Q+LE
Sbjct: 1123 NYSLVRTGKTLLV--TRGANPHKISGDIIEEGDTLITLPYDRLKSGDITQGLPKVEQLLE 1180
Query: 61 IRSFDLILA 69
RS I A
Sbjct: 1181 SRSIASIPA 1189
>gi|352950994|ref|YP_004891349.1| RNA polymerase beta subunit-2 (chloroplast) [Cephalotaxus
wilsoniana]
gi|350529188|dbj|BAL03730.1| RNA polymerase beta subunit-2 (chloroplast) [Cephalotaxus
wilsoniana]
Length = 1201
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
T GA +YG +++G+ L+T YEKL+S D+ + L KV+Q+ E R
Sbjct: 912 GTRGATLHGYYGKIIYQGDTLITLSYEKLKSDDIIQGLPKVEQLSEAR 959
>gi|108773281|ref|YP_635713.1| beta'' subunit of RNA polymerase [Chara vulgaris]
gi|122177829|sp|Q1ACN4.1|RPOC2_CHAVU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|77157937|gb|ABA61978.1| beta'' subunit of RNA polymerase [Chara vulgaris]
Length = 1412
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLI 67
AT GAI G + +G+ L+T IYE+L++ D+ + L K++Q+LE R +++
Sbjct: 1121 ATRGAIVHPRNGETIREGDTLMTLIYERLKAGDIIQGLPKIEQLLEARRENVV 1173
>gi|242910200|ref|YP_002970634.1| RNA polymerase b''-subunit [Alsophila spinulosa]
gi|218454869|gb|ACK77206.1| RNA polymerase b''-subunit [Alsophila spinulosa]
Length = 1415
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 2 HTHLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEI 61
H +L + + AT GAI ++ G + +G+ L+T +++LRS D + L KV+Q+LE
Sbjct: 1119 HKYLLTRTAKPLLATRGAILQKNSGDIIGEGDTLITLPHDRLRSGDTIQGLPKVEQLLES 1178
Query: 62 RSFDLILA 69
RS I A
Sbjct: 1179 RSIASIPA 1186
>gi|374249502|ref|YP_005088721.1| rpoC2 gene product [Phaeocystis antarctica]
gi|340008193|gb|AEK26825.1| RNA polymerase beta'' subunit [Phaeocystis antarctica]
Length = 1275
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+ GAI G+ + + +KL T IYEKL++ D+ + L KV+++LE R
Sbjct: 956 SQGAILEVESGSLVQRLDKLATLIYEKLKTVDIVQGLPKVEEILEAR 1002
>gi|335352809|gb|AEH42627.1| RNA polymerase beta subunit [Turnera ulmifolia]
Length = 1362
Score = 41.2 bits (95), Expect = 0.072, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 3 THLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+H KS Q++I+ ++ R +L L TF+YEK RS D+T+ L KV+++ E+R
Sbjct: 1074 SHPKSGQVIIIHLE--SLVLRSAKPYLVTPG-LATFLYEKSRSDDITQGLPKVEKMFEVR 1130
Query: 63 SFD 65
S D
Sbjct: 1131 STD 1133
>gi|90403927|gb|ABD93857.1| RNA polymerase beta chain [Gnetum gnemon]
Length = 721
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
+TP A + +++G+ L+TF YE+ ++ D+T+ L KV+Q++E S
Sbjct: 552 STPKATIHGNSAEIINQGDPLITFFYERFKASDITQGLPKVEQLVETHS 600
>gi|108796738|ref|YP_636564.1| beta'' subunit of RNA polymerase [Zygnema circumcarinatum]
gi|122211705|sp|Q32RG2.1|RPOC2_ZYGCR RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|61393722|gb|AAX45864.1| beta'' subunit of RNA polymerase [Zygnema circumcarinatum]
Length = 1095
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 8/51 (15%)
Query: 26 GAFLH--------KGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDLIL 68
G F+H +G+ ++T +YE+LR+ D+ + L K +Q+LE RSF+ ++
Sbjct: 765 GTFIHPDCYDVINRGDIVITMMYEQLRTTDIIQGLPKAEQLLEARSFNEVV 815
>gi|428778965|ref|YP_007170751.1| DNA-directed RNA polymerase, beta'''' subunit [Dactylococcopsis
salina PCC 8305]
gi|428693244|gb|AFZ49394.1| DNA-directed RNA polymerase, beta'''' subunit [Dactylococcopsis
salina PCC 8305]
Length = 1289
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 5 LKSDQILIVQATP-----GAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVL 59
+K D I++ A P GA+ G+ + +G+ LV IYE+ ++ D+ + L +++++L
Sbjct: 938 VKKDAIVLRNARPYRVSSGAVLHVDNGSLVQRGDNLVLLIYERTKTGDIIQGLPRIEELL 997
Query: 60 EIR 62
E R
Sbjct: 998 EAR 1000
>gi|146261503|gb|ABQ15061.1| RNA polymerase beta' subunit [Choristylis rhamnoides]
Length = 800
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 4 HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
HLKS Q+LIVQ ATPGA HYG
Sbjct: 610 HLKSGQVLIVQVDSVVIRSAKTYLATPGATVHGHYGEXXXXXXXXXXXXXXXXXXXXXXX 669
Query: 51 ALSKVKQVLEIRSFDLI 67
L KV+QVLE+RS D I
Sbjct: 670 GLPKVEQVLEVRSIDSI 686
>gi|215400712|ref|YP_002327473.1| RNA polymerase beta'' subunit [Vaucheria litorea]
gi|194441162|gb|ACF70890.1| RNA polymerase beta'' subunit [Vaucheria litorea]
Length = 1275
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 3 THLKSDQILIVQATP-----GAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQ 57
T + +QI + + P GA + G ++KG KL IYE++R+ D+ + L KV++
Sbjct: 928 TSIYGNQIKLYKGDPYLFSEGAQIKKRPGDLINKGEKLGQLIYERVRTEDIIQGLPKVEE 987
Query: 58 VLEIR 62
+LE R
Sbjct: 988 ILEAR 992
>gi|172038400|ref|YP_001804901.1| DNA-directed RNA polymerase subunit beta' [Cyanothece sp. ATCC
51142]
gi|354554253|ref|ZP_08973558.1| DNA-directed RNA polymerase, beta'' subunit [Cyanothece sp. ATCC
51472]
gi|212277659|sp|B1WZT6.1|RPOC2_CYAA5 RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP
subunit beta'; AltName: Full=RNA polymerase subunit
beta'; AltName: Full=Transcriptase subunit beta'
gi|171699854|gb|ACB52835.1| RNA polymerase beta prime subunit [Cyanothece sp. ATCC 51142]
gi|353553932|gb|EHC23323.1| DNA-directed RNA polymerase, beta'' subunit [Cyanothece sp. ATCC
51472]
Length = 1306
Score = 38.1 bits (87), Expect = 0.58, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 14 QATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+ +PGAI G + +G+ LV +YE+ ++ D+ + L +++++LE R
Sbjct: 945 RVSPGAILHIADGDLVQRGDNLVLLVYERAKTGDIIQGLPRIEELLEAR 993
>gi|126655815|ref|ZP_01727254.1| DNA-directed RNA polymerase beta' subunit [Cyanothece sp. CCY0110]
gi|126623294|gb|EAZ93999.1| DNA-directed RNA polymerase beta' subunit [Cyanothece sp. CCY0110]
Length = 1180
Score = 38.1 bits (87), Expect = 0.58, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 14 QATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+ +PGAI G + +G+ LV +YE+ ++ D+ + L +++++LE R
Sbjct: 822 RVSPGAILHIADGDLVQRGDNLVLLVYERAKTGDIIQGLPRIEELLEAR 870
>gi|162134378|gb|ABX82653.1| beta'' subunit of RNA polymerase [Trebouxia aggregata]
Length = 532
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 28/39 (71%)
Query: 24 HYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
++G F+ KG+ L+T Y++L++ D+ + + K++Q+ E R
Sbjct: 278 NHGDFIDKGSPLLTLFYQRLKTGDIVQGIPKIEQLFEAR 316
>gi|428216164|ref|YP_007089308.1| DNA-directed RNA polymerase subunit beta' [Oscillatoria acuminata PCC
6304]
gi|428004545|gb|AFY85388.1| DNA-directed RNA polymerase subunit beta' [Oscillatoria acuminata PCC
6304]
Length = 1358
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 32/49 (65%)
Query: 14 QATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+ +PGA+ G+ + +G+ LV ++E+ ++ D+ + L +++++LE R
Sbjct: 979 RVSPGAVLHVDDGSLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEAR 1027
>gi|428226337|ref|YP_007110434.1| DNA-directed RNA polymerase subunit beta' [Geitlerinema sp. PCC 7407]
gi|427986238|gb|AFY67382.1| DNA-directed RNA polymerase subunit beta' [Geitlerinema sp. PCC 7407]
Length = 1323
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 32/49 (65%)
Query: 14 QATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+ +PGA+ G+ + +G+ LV ++E+ ++ D+ + L +++++LE R
Sbjct: 964 RVSPGAVLHVDDGSLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEAR 1012
>gi|428776705|ref|YP_007168492.1| DNA-directed RNA polymerase subunit beta' [Halothece sp. PCC 7418]
gi|428690984|gb|AFZ44278.1| DNA-directed RNA polymerase subunit beta' [Halothece sp. PCC 7418]
Length = 1335
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 5 LKSDQILIVQATP-----GAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVL 59
++ + I++ A P GA+ G+ + +G+ LV IYE+ ++ D+ + L +++++L
Sbjct: 980 VRDEAIVLRNARPYRVSNGAVLHVENGSLVQRGDNLVLLIYERSKTGDIVQGLPRIEELL 1039
Query: 60 EIR 62
E R
Sbjct: 1040 EAR 1042
>gi|108796840|ref|YP_636394.1| beta'' subunit of RNA polymerase [Staurastrum punctulatum]
gi|122211805|sp|Q32RY2.1|RPOC2_STAPU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|61393608|gb|AAX45749.1| beta'' subunit of RNA polymerase [Staurastrum punctulatum]
Length = 1250
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 18 GAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
G I+ + +++G+ LVT YE+L++ D+ + L K +Q+LE R
Sbjct: 869 GGIAHTFHKQTINEGDTLVTLAYERLKASDIIQGLPKAEQLLEAR 913
>gi|299890915|gb|ADJ57414.1| RNA polymerase beta'' subunit [uncultured prymnesiophyte C19847]
Length = 1123
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 9 QILIVQATP-----GAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
QI+I P G I G+ + + + L T +Y+KL++ D+ + L KV+++LE R
Sbjct: 802 QIIIRLGRPYLISEGTILRVESGSLVERSDLLATLVYDKLKTVDIVQGLPKVEEILEAR 860
>gi|16329956|ref|NP_440684.1| DNA-directed RNA polymerase subunit beta' [Synechocystis sp. PCC
6803]
gi|383321699|ref|YP_005382552.1| DNA-directed RNA polymerase subunit beta' [Synechocystis sp. PCC
6803 substr. GT-I]
gi|383324868|ref|YP_005385721.1| DNA-directed RNA polymerase subunit beta' [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|383490752|ref|YP_005408428.1| DNA-directed RNA polymerase subunit beta' [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|384436019|ref|YP_005650743.1| DNA-directed RNA polymerase subunit beta' [Synechocystis sp. PCC
6803]
gi|451814115|ref|YP_007450567.1| RNA polymerase beta prime subunit [Synechocystis sp. PCC 6803]
gi|2500624|sp|P73334.1|RPOC2_SYNY3 RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP
subunit beta'; AltName: Full=RNA polymerase subunit
beta'; AltName: Full=Transcriptase subunit beta'
gi|1652442|dbj|BAA17364.1| RNA polymerase beta prime subunit [Synechocystis sp. PCC 6803]
gi|339273051|dbj|BAK49538.1| DNA-directed RNA polymerase subunit beta' [Synechocystis sp. PCC
6803]
gi|359271018|dbj|BAL28537.1| DNA-directed RNA polymerase subunit beta' [Synechocystis sp. PCC
6803 substr. GT-I]
gi|359274188|dbj|BAL31706.1| DNA-directed RNA polymerase subunit beta' [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|359277358|dbj|BAL34875.1| DNA-directed RNA polymerase subunit beta' [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|407957848|dbj|BAM51088.1| DNA-directed RNA polymerase subunit beta' [Bacillus subtilis
BEST7613]
gi|451780084|gb|AGF51053.1| RNA polymerase beta prime subunit [Synechocystis sp. PCC 6803]
Length = 1317
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 31/49 (63%)
Query: 14 QATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+ +PGA+ G + +G+ LV ++E+ ++ D+ + L +++++LE R
Sbjct: 945 RVSPGAVLHIEDGDLVQRGDNLVLLVFERAKTGDIVQGLPRIEELLEAR 993
>gi|336169604|ref|YP_004581348.1| rpoC2 gene product (chloroplast) [Schizomeris leibleinii]
gi|334851224|gb|AEH05396.1| beta'' subunit of RNA polymerase (chloroplast) [Schizomeris
leibleinii]
Length = 2143
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63
+P I +G + K N +++ YE+L++ D+ + + KV+Q+LE RS
Sbjct: 1922 SPKCIFHYTHGDLVEKNNSILSLPYEQLKTGDIVQGIPKVEQLLEARS 1969
>gi|434394229|ref|YP_007129176.1| DNA-directed RNA polymerase subunit beta' [Gloeocapsa sp. PCC 7428]
gi|428266070|gb|AFZ32016.1| DNA-directed RNA polymerase subunit beta' [Gloeocapsa sp. PCC 7428]
Length = 1348
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 31/49 (63%)
Query: 14 QATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+ +PGA+ G + +G+ LV ++E+ ++ D+ + L +++++LE R
Sbjct: 977 RVSPGAVLQVEDGGLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEAR 1025
>gi|434386952|ref|YP_007097563.1| DNA-directed RNA polymerase, beta'''' subunit [Chamaesiphon minutus
PCC 6605]
gi|428017942|gb|AFY94036.1| DNA-directed RNA polymerase, beta'''' subunit [Chamaesiphon minutus
PCC 6605]
Length = 1333
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 31/49 (63%)
Query: 14 QATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+ +PGAI G + +G+ LV ++E+ ++ D+ + L +++++LE R
Sbjct: 950 RVSPGAILHIDNGDLVQRGDNLVLLVFERSKTGDIIQGLPRIEELLEAR 998
>gi|282895800|ref|ZP_06303887.1| RNA polymerase Rpb1 [Raphidiopsis brookii D9]
gi|281199300|gb|EFA74166.1| RNA polymerase Rpb1 [Raphidiopsis brookii D9]
Length = 726
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 31/49 (63%)
Query: 14 QATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+ +PGA+ G + +G+ LV ++E+ ++ D+ + L +++++LE R
Sbjct: 334 RVSPGAVLQIEDGGLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEAR 382
>gi|282900418|ref|ZP_06308368.1| RNA polymerase Rpb1 [Cylindrospermopsis raciborskii CS-505]
gi|281194731|gb|EFA69678.1| RNA polymerase Rpb1 [Cylindrospermopsis raciborskii CS-505]
Length = 1374
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 31/49 (63%)
Query: 14 QATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+ +PGA+ G + +G+ LV ++E+ ++ D+ + L +++++LE R
Sbjct: 982 RVSPGAVLQIEDGGLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEAR 1030
>gi|11465575|ref|NP_045033.1| RNA polymerase beta'' subunit [Cyanidium caldarium]
gi|14547999|sp|Q9TM34.1|RPOC2_CYACA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|6466431|gb|AAF13013.1|AF022186_185 unknown [Cyanidium caldarium]
Length = 1269
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 31/47 (65%)
Query: 16 TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIR 62
+PG + ++G + KG+ L +++K+++ D+ + L +++++LE R
Sbjct: 955 SPGTLIHVNHGELIRKGDYLALLVFDKIKTGDIIQGLPRIEEILEAR 1001
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.328 0.141 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 960,958,368
Number of Sequences: 23463169
Number of extensions: 26340890
Number of successful extensions: 69035
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 67686
Number of HSP's gapped (non-prelim): 1044
length of query: 71
length of database: 8,064,228,071
effective HSP length: 43
effective length of query: 28
effective length of database: 7,055,311,804
effective search space: 197548730512
effective search space used: 197548730512
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 69 (31.2 bits)