BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042693
(71 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H4W|B Chain B, Crystal Structure Of Human Caspase-1 (Glu390->asp) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H51|B Chain B, Crystal Structure Of Human Caspase-1 (Glu390->asp And
Arg286->lys) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 88
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 4 HLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLE 60
H++ D I +TP +S+RH +L+ + E SCD+ KV+ E
Sbjct: 6 HIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFE 62
>pdb|1ICE|B Chain B, Structure And Mechanism Of Interleukin-1beta Converting
Enzyme
pdb|1BMQ|B Chain B, Crystal Structure Of The Complex Of Interleukin-1beta
Converting Enzyme (Ice) With A Peptide Based Inhibitor,
(3s
)-N-Methanesulfonyl-3-({1-[n-(2-Naphtoyl)-L-Valyl]-L-
Prolyl }amino)-4-Oxobutanamide
pdb|1SC1|B Chain B, Crystal Structure Of An Active-Site Ligand-Free Form Of
The Human Caspase-1 C285a Mutant
pdb|1SC3|B Chain B, Crystal Structure Of The Human Caspase-1 C285a Mutant In
Complex With Malonate
pdb|1SC4|B Chain B, Crystal Structure Of The Human Caspase-1 C285a Mutant
After Removal Of Malonate
pdb|1RWK|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
3-(2-Mercapto- Acetylamino)-4-Oxo-Pentanoic Acid
pdb|1RWM|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[2-(5-
{[4-(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-
Thiophen-2-Yl)- Acetylamino]-Pentanoic Acid
pdb|1RWN|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
3-{2-Ethyl-6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Hexanoylamino}-4-
Oxo-Butyric Acid
pdb|1RWO|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Pentanoic Acid
pdb|1RWP|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
3-{6-[(8-Hydroxy-
Quinoline-2-Carbonyl)-Amino]-2-Thiophen-2-Yl-
Hexanoylamino}-4-Oxo- Butyric Acid
pdb|1RWV|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
5-[5-(1-
Carboxymethyl-2-oxo-propylcarbamoyl)-5-phenyl-
pentylsulfamoyl]-2- Hydroxy-benzoic Acid
pdb|1RWW|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[(6-{[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-Pyridine-
3-Carbonyl)- Amino]-Butyric Acid
pdb|1RWX|B Chain B, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Yloxy)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Butyric Acid
pdb|2HBQ|B Chain B, Crystal Structure Of Wildtype Human Caspase-1 In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBR|B Chain B, Crystal Structure Of Human Caspase-1 (Arg286->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H4Y|B Chain B, Crystal Structure Of Human Caspase-1 (Arg286->lys) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|3NS7|B Chain B, Succinic Acid Amides As P2-P3 Replacements For
Inhibitors Of Interleukin-1beta Converting Enzyme (Ice
Or Caspase 1)
Length = 88
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 4 HLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLE 60
H++ D I +TP +S+RH +L+ + E SCD+ KV+ E
Sbjct: 6 HIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFE 62
>pdb|2HBY|B Chain B, Crystal Structure Of Human Caspase-1 (Glu390->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBZ|B Chain B, Crystal Structure Of Human Caspase-1 (Arg286->ala,
Glu390->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 88
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 4 HLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLE 60
H++ D I +TP +S+RH +L+ + E SCD+ KV+ E
Sbjct: 6 HIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFE 62
>pdb|2H54|B Chain B, Crystal Structure Of Human Caspase-1 (Thr388->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 88
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 4 HLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLE 60
H++ D I +TP +S+RH +L+ + E SCD+ KV+ E
Sbjct: 6 HIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFE 62
>pdb|3D6F|B Chain B, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Arg240->gln Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
pdb|3D6H|B Chain B, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Asn263->ser Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 89
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 4 HLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLE 60
H++ D I +TP +S+RH +L+ + E SCD+ KV+ E
Sbjct: 7 HIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFE 63
>pdb|3D6M|B Chain B, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Lys319->arg Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 89
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 4 HLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLE 60
H++ D I +TP +S+RH +L+ + E SCD+ KV+ E
Sbjct: 7 HIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFE 63
>pdb|1IBC|B Chain B, Crystal Structure Of Inhibited Interleukin-1beta
Converting Enzyme
Length = 88
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 4 HLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLE 60
H++ D I +TP +S+RH +L+ + E SCD+ KV+ E
Sbjct: 6 HIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFE 62
>pdb|3E4C|A Chain A, Procaspase-1 Zymogen Domain Crystal Strucutre
pdb|3E4C|B Chain B, Procaspase-1 Zymogen Domain Crystal Strucutre
Length = 302
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 4 HLKSDQILIVQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLE 60
H++ D I +TP +S+RH +L+ + E SCD+ KV+ E
Sbjct: 220 HIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFE 276
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOP|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOR|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOS|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
Length = 364
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 8 DQILIVQATPGAISFRHYGAFLHKGNKLVTFI 39
++++ V+ + G H G FL KG + V+FI
Sbjct: 34 EEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFI 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,866,941
Number of Sequences: 62578
Number of extensions: 52363
Number of successful extensions: 127
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 9
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)