BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042693
         (71 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q56P11|RPOC2_LACSA DNA-directed RNA polymerase subunit beta'' OS=Lactuca sativa GN=rpoC2
            PE=3 SV=2
          Length = 1381

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158


>sp|P11704|RPOC2_SPIOL DNA-directed RNA polymerase subunit beta'' OS=Spinacia oleracea
            GN=rpoC2 PE=3 SV=1
          Length = 1361

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/78 (53%), Positives = 51/78 (65%), Gaps = 13/78 (16%)

Query: 3    THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
            THLKS Q+LIVQ             ATPGA    HYG  +++G+ LVTFIYEK RS D+T
Sbjct: 1072 THLKSGQVLIVQFDSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDIT 1131

Query: 50   RALSKVKQVLEIRSFDLI 67
            + L KV+QVLE+RS D I
Sbjct: 1132 QGLPKVEQVLEVRSIDSI 1149


>sp|Q49L08|RPOC2_EUCGG DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus
            subsp. globulus GN=rpoC2 PE=3 SV=1
          Length = 1392

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1148

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1149 GLPKVEQVLEVRSIDSI 1165


>sp|Q4VZP3|RPOC2_CUCSA DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus
            GN=rpoC2 PE=3 SV=1
          Length = 1394

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS QI+IVQ             AT GA   RHYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1091 HLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQ 1150

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1151 GLPKVEQVLEVRSIDSI 1167


>sp|Q09MI8|RPOC2_CITSI DNA-directed RNA polymerase subunit beta'' OS=Citrus sinensis
            GN=rpoC2 PE=3 SV=1
          Length = 1403

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 51/77 (66%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            +LKS Q+LIVQ             ATPGA    HYGA L++G+ LVTFIYEK RS D+T+
Sbjct: 1094 YLKSGQVLIVQVNSVVIRSAKPYLATPGATVHGHYGAILYEGDTLVTFIYEKSRSGDITQ 1153

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1154 GLPKVEQVLEVRSLDSI 1170


>sp|Q1KXX0|RPOC2_HELAN DNA-directed RNA polymerase subunit beta'' OS=Helianthus annuus
            GN=rpoC2 PE=3 SV=1
          Length = 1362

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LI+Q             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLILQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158


>sp|Q09G56|RPOC2_PLAOC DNA-directed RNA polymerase subunit beta'' OS=Platanus occidentalis
            GN=rpoC2 PE=3 SV=1
          Length = 1387

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIV              ATPGA    HYG  L+KG+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKSGQVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQ 1143

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160


>sp|B2LMI2|RPOC2_GUIAB DNA-directed RNA polymerase subunit beta'' OS=Guizotia abyssinica
            GN=rpoC2 PE=3 SV=1
          Length = 1381

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LI+Q             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLILQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158


>sp|B1A925|RPOC2_CARPA DNA-directed RNA polymerase subunit beta'' OS=Carica papaya GN=rpoC2
            PE=3 SV=1
          Length = 1387

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158


>sp|A8SE78|RPOC2_CERDE DNA-directed RNA polymerase subunit beta'' OS=Ceratophyllum demersum
            GN=rpoC2 PE=3 SV=1
          Length = 1390

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            H+KS Q+LIVQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HIKSGQVLIVQFDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1142

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159


>sp|A4QJI9|RPOC2_AETGR DNA-directed RNA polymerase subunit beta'' OS=Aethionema grandiflora
            GN=rpoC2 PE=3 SV=1
          Length = 1383

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 50/77 (64%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1082 HLKSGQVLIVQMDSVVLRCAKPYLATPGAKVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1141

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1142 GLPKVEQVLEVRSIDSI 1158


>sp|Q09FX1|RPOC2_NANDO DNA-directed RNA polymerase subunit beta'' OS=Nandina domestica
            GN=rpoC2 PE=3 SV=1
          Length = 1377

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q++IV              ATPGA    HYG  L+KG+ LVTFIYEK RS D+T+
Sbjct: 1074 HLKSGQVIIVHVDSLVIRSAKPYLATPGATVHGHYGEILYKGDTLVTFIYEKSRSGDITQ 1133

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1134 GLPKVEQVLEVRSIDSI 1150


>sp|Q0G9X2|RPOC2_DAUCA DNA-directed RNA polymerase subunit beta'' OS=Daucus carota GN=rpoC2
            PE=3 SV=1
          Length = 1390

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIV+             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1085 HLKSGQVLIVKMDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1144

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1145 GLPKVEQVLEVRSIDSI 1161


>sp|B1NWE0|RPOC2_MANES DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta
            GN=rpoC2 PE=3 SV=1
          Length = 1393

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q++IV              ATPGA    HYG  L++GN LVTFIYEK RS D+T+
Sbjct: 1088 HLKSGQVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILYEGNTLVTFIYEKSRSGDITQ 1147

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1148 GLPKVEQVLEVRSIDSI 1164


>sp|A1XGM8|RPOC2_RANMC DNA-directed RNA polymerase subunit beta'' OS=Ranunculus macranthus
            GN=rpoC2 PE=3 SV=1
          Length = 1383

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIV              ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1079 HLKSGQVLIVDVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1138

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155


>sp|Q68S16|RPOC2_PANGI DNA-directed RNA polymerase subunit beta'' OS=Panax ginseng GN=rpoC2
            PE=3 SV=1
          Length = 1387

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLK  Q+LIVQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKPGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1143

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160


>sp|A6MM26|RPOC2_BUXMI DNA-directed RNA polymerase subunit beta'' OS=Buxus microphylla
            GN=rpoC2 PE=3 SV=1
          Length = 1391

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIV              ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 HLKSGQVLIVHIDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1145

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1146 GLPKVEQVLEVRSIDSI 1162


>sp|Q09X27|RPOC2_MORIN DNA-directed RNA polymerase subunit beta'' OS=Morus indica GN=rpoC2
            PE=3 SV=1
          Length = 1389

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q++IVQ             ATPGA    HYG  L +G+ LVTFIYEK RS D+T+
Sbjct: 1086 HLKSGQVIIVQIDSVVIRSAKSYLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQ 1145

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1146 GLPKVEQVLEVRSIDSI 1162


>sp|A4QJA5|RPOC2_AETCO DNA-directed RNA polymerase subunit beta'' OS=Aethionema cordifolium
            GN=rpoC2 PE=3 SV=1
          Length = 1385

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q LIVQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HLKSGQALIVQMDSVVIRSAKPYLATPGAKVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1143

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160


>sp|P56764|RPOC2_ARATH DNA-directed RNA polymerase subunit beta'' OS=Arabidopsis thaliana
            GN=rpoC2 PE=2 SV=1
          Length = 1376

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             ATPGA    HY   L++G+ LVTFIYEK RS D+T+
Sbjct: 1080 HLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQ 1139

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1140 GLPKVEQVLEVRSIDSI 1156


>sp|Q0ZJ30|RPOC2_VITVI DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera GN=rpoC2
            PE=3 SV=1
          Length = 1394

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             AT GA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1089 HLKSGQVLIVQVDSVVIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1148

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1149 GLPKVEQVLEVRSIDSI 1165


>sp|A6MMT4|RPOC2_ILLOL DNA-directed RNA polymerase subunit beta'' OS=Illicium oligandrum
            GN=rpoC2 PE=3 SV=1
          Length = 1385

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)

Query: 5    LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
            +KS Q+LIV              ATPGA    HYG  L++GN LVTFIYEK RS D+T+ 
Sbjct: 1083 IKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGNTLVTFIYEKSRSGDITQG 1142

Query: 52   LSKVKQVLEIRSFDLI 67
            L KV+QVLE+RS D I
Sbjct: 1143 LPKVEQVLEVRSIDSI 1158


>sp|Q0G9M9|RPOC2_LIRTU DNA-directed RNA polymerase subunit beta'' OS=Liriodendron tulipifera
            GN=rpoC2 PE=3 SV=1
          Length = 1382

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            H+KS Q+LIV              ATPGA    HYG  L +G+ LVTFIYEK RS D+T+
Sbjct: 1079 HIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQ 1138

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1139 GLPKVEQVLEVRSIDSI 1155


>sp|Q8HVY3|RPOC2_SOYBN DNA-directed RNA polymerase subunit beta'' OS=Glycine max GN=rpoC2
            PE=3 SV=2
          Length = 1386

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 48/77 (62%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS QIL VQ             ATPGA    HYG  L +G+ LVTFIYEK RS D+T+
Sbjct: 1087 HLKSGQILTVQMDSVGIRSANPYLATPGATVHGHYGEILSEGDILVTFIYEKSRSGDITQ 1146

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1147 GLPKVEQVLEVRSIDSI 1163


>sp|P12227|RPOC2_PEA DNA-directed RNA polymerase subunit beta'' (Fragment) OS=Pisum
           sativum GN=rpoC2 PE=3 SV=1
          Length = 1163

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 49/79 (62%), Gaps = 13/79 (16%)

Query: 2   HTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDL 48
           H  LKS Q++IVQ             ATPGA    HYG  L +G+ LVTFIYEK RS D+
Sbjct: 872 HLKLKSGQVIIVQMDSVIIRSANPYLATPGATIHGHYGEILSQGDILVTFIYEKSRSGDI 931

Query: 49  TRALSKVKQVLEIRSFDLI 67
           T+ L KV+Q+LEIRS D I
Sbjct: 932 TQGLPKVEQILEIRSIDSI 950


>sp|A6MMB2|RPOC2_CHLSC DNA-directed RNA polymerase subunit beta'' OS=Chloranthus spicatus
            GN=rpoC2 PE=3 SV=1
          Length = 1389

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            H++S Q+LIV              ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1084 HIESGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1143

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1144 GLPKVEQVLEVRSIDSI 1160


>sp|A4QL96|RPOC2_LEPVR DNA-directed RNA polymerase subunit beta'' OS=Lepidium virginicum
            GN=rpoC2 PE=3 SV=1
          Length = 1373

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             ATPGA    HY   L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159


>sp|A4QKI2|RPOC2_CAPBU DNA-directed RNA polymerase subunit beta'' OS=Capsella bursa-pastoris
            GN=rpoC2 PE=3 SV=1
          Length = 1379

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             ATPGA    HY   L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159


>sp|A4QL09|RPOC2_DRANE DNA-directed RNA polymerase subunit beta'' OS=Draba nemorosa GN=rpoC2
            PE=3 SV=1
          Length = 1381

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             ATPGA    HY   L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQKDSIVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159


>sp|A4QJS3|RPOC2_OLIPU DNA-directed RNA polymerase subunit beta'' OS=Olimarabidopsis pumila
            GN=rpoC2 PE=3 SV=1
          Length = 1379

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             ATPGA    HY   L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159


>sp|A4QLS3|RPOC2_NASOF DNA-directed RNA polymerase subunit beta'' OS=Nasturtium officinale
            GN=rpoC2 PE=3 SV=1
          Length = 1379

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             ATPGA    HY   L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159


>sp|A4QK08|RPOC2_ARAHI DNA-directed RNA polymerase subunit beta'' OS=Arabis hirsuta GN=rpoC2
            PE=3 SV=1
          Length = 1371

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIVQ             ATPGA    HY   L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVQRDSIVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159


>sp|A9L986|RPOC2_LEMMI DNA-directed RNA polymerase subunit beta'' OS=Lemna minor GN=rpoC2
            PE=3 SV=1
          Length = 1366

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 48/79 (60%), Gaps = 13/79 (16%)

Query: 6    KSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRAL 52
            KS Q++IV              ATPGA    HYG  LH+G+ LVTFIYEK RS D+T+ L
Sbjct: 1078 KSGQVIIVHVDYLVIRSAKPYLATPGATVHGHYGETLHEGDTLVTFIYEKSRSGDITQGL 1137

Query: 53   SKVKQVLEIRSFDLILACL 71
             KV+QVLE+RS D I   L
Sbjct: 1138 PKVEQVLEVRSIDSISTNL 1156


>sp|Q589B8|RPOC2_SILLA DNA-directed RNA polymerase subunit beta'' OS=Silene latifolia
            GN=rpoC2 PE=3 SV=1
          Length = 1373

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLK  QI+IVQ             ATPGA    HYG  +++G+ LVTFIYEK RS D+T+
Sbjct: 1075 HLKPGQIIIVQFDSVVIRSAKPCLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQ 1134

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS + I
Sbjct: 1135 GLPKVEQVLEVRSVESI 1151


>sp|Q14FG7|RPOC2_POPAL DNA-directed RNA polymerase subunit beta'' OS=Populus alba GN=rpoC2
            PE=3 SV=1
          Length = 1390

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)

Query: 5    LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
            LKS Q+LIV A             TPGA    HYG  L++G+ LVTFIYEK RS D+T+ 
Sbjct: 1088 LKSGQVLIVHADSVILRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1147

Query: 52   LSKVKQVLEIRSFDLI 67
            L KV+QVLE+RS D I
Sbjct: 1148 LPKVEQVLEVRSIDSI 1163


>sp|A4GYP8|RPOC2_POPTR DNA-directed RNA polymerase subunit beta'' OS=Populus trichocarpa
            GN=rpoC2 PE=3 SV=1
          Length = 1390

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)

Query: 5    LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
            LKS Q+LIV A             TPGA    HYG  L++G+ LVTFIYEK RS D+T+ 
Sbjct: 1088 LKSGQVLIVHADSVILRLAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQG 1147

Query: 52   LSKVKQVLEIRSFDLI 67
            L KV+QVLE+RS D I
Sbjct: 1148 LPKVEQVLEVRSIDSI 1163


>sp|A0ZZ25|RPOC2_GOSBA DNA-directed RNA polymerase subunit beta'' OS=Gossypium barbadense
            GN=rpoC2 PE=3 SV=1
          Length = 1391

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)

Query: 5    LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
            LKS Q+ IVQA             TPGA    HYG  L++G+ LVTFIYEK RS D+T+ 
Sbjct: 1087 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1146

Query: 52   LSKVKQVLEIRSFDLI 67
            L KV+QVLE+RS D I
Sbjct: 1147 LPKVEQVLEVRSIDSI 1162


>sp|Q2MIB0|RPOC2_SOLLC DNA-directed RNA polymerase subunit beta'' OS=Solanum lycopersicum
            GN=rpoC2 PE=3 SV=1
          Length = 1392

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)

Query: 5    LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
            LKS Q+++VQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+ 
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149

Query: 52   LSKVKQVLEIRSFDLI 67
            L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165


>sp|Q2MIJ7|RPOC2_SOLBU DNA-directed RNA polymerase subunit beta'' OS=Solanum bulbocastanum
            GN=rpoC2 PE=3 SV=1
          Length = 1392

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)

Query: 5    LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
            LKS Q+++VQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+ 
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149

Query: 52   LSKVKQVLEIRSFDLI 67
            L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165


>sp|A4QK95|RPOC2_BARVE DNA-directed RNA polymerase subunit beta'' OS=Barbarea verna GN=rpoC2
            PE=3 SV=1
          Length = 1379

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 13/80 (16%)

Query: 1    DHTHLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCD 47
            +  HLKS Q+LIVQ             ATPGA    HY   L++G+ LVTFIYEK RS D
Sbjct: 1080 NEPHLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGD 1139

Query: 48   LTRALSKVKQVLEIRSFDLI 67
            +T+ L KV+QVLE+R+ D I
Sbjct: 1140 ITQGLPKVEQVLEVRAIDSI 1159


>sp|Q06GS0|RPOC2_PIPCE DNA-directed RNA polymerase subunit beta'' OS=Piper cenocladum
            GN=rpoC2 PE=3 SV=1
          Length = 1380

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 13/78 (16%)

Query: 3    THLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLT 49
            +H+KS QI+ V              ATPGA    HYG  +++G+ LVTFIYEK RS D+T
Sbjct: 1086 SHIKSGQIVTVHGDSLVIRSAKLHLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDIT 1145

Query: 50   RALSKVKQVLEIRSFDLI 67
            + L KV+QVLE+RS D I
Sbjct: 1146 QGLPKVEQVLEVRSIDSI 1163


>sp|Q33C48|RPOC2_NICTO DNA-directed RNA polymerase subunit beta'' OS=Nicotiana
            tomentosiformis GN=rpoC2 PE=3 SV=1
          Length = 1392

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)

Query: 5    LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
            LKS Q+++VQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+ 
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149

Query: 52   LSKVKQVLEIRSFDLI 67
            L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSIDSI 1165


>sp|Q8S8Y1|RPOC2_ATRBE DNA-directed RNA polymerase subunit beta'' OS=Atropa belladonna
            GN=rpoC2 PE=3 SV=1
          Length = 1389

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)

Query: 5    LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
            LKS Q+++VQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+ 
Sbjct: 1087 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1146

Query: 52   LSKVKQVLEIRSFDLI 67
            L KV+QVLE+RS D I
Sbjct: 1147 LPKVEQVLEVRSIDSI 1162


>sp|Q2L8Z5|RPOC2_GOSHI DNA-directed RNA polymerase subunit beta'' OS=Gossypium hirsutum
            GN=rpoC2 PE=3 SV=1
          Length = 1393

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 13/76 (17%)

Query: 5    LKSDQILIVQA-------------TPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
            LKS Q+ IVQA             TPGA    HYG  L++G+ LVTFIYEK RS D+T+ 
Sbjct: 1089 LKSGQVFIVQADSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1148

Query: 52   LSKVKQVLEIRSFDLI 67
            L KV+QVLE+RS D I
Sbjct: 1149 LPKVEQVLEVRSIDSI 1164


>sp|P38550|RPOC2_TOBAC DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum
            GN=rpoC2 PE=3 SV=2
          Length = 1392

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)

Query: 5    LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
            LKS Q+++VQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+ 
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149

Query: 52   LSKVKQVLEIRSFDLI 67
            L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSVDSI 1165


>sp|Q3C1G9|RPOC2_NICSY DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris
            GN=rpoC2 PE=3 SV=1
          Length = 1392

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 13/76 (17%)

Query: 5    LKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRA 51
            LKS Q+++VQ             ATPGA    HYG  L++G+ LVTFIYEK RS D+T+ 
Sbjct: 1090 LKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQG 1149

Query: 52   LSKVKQVLEIRSFDLI 67
            L KV+QVLE+RS D I
Sbjct: 1150 LPKVEQVLEVRSVDSI 1165


>sp|Q06H07|RPOC2_DRIGR DNA-directed RNA polymerase subunit beta'' OS=Drimys granadensis
            GN=rpoC2 PE=3 SV=1
          Length = 1381

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
             +KS Q+LIV              ATPGA    HYG  L++G+ LVTFIYEK RS D+T+
Sbjct: 1086 QIKSGQVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQ 1145

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1146 GLPKVEQVLEVRSVDSI 1162


>sp|A4QLI4|RPOC2_LOBMA DNA-directed RNA polymerase subunit beta'' OS=Lobularia maritima
            GN=rpoC2 PE=3 SV=1
          Length = 1371

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            HLKS Q+LIV+             ATPGA    HY   L++G+ LVTFIYEK RS D+T+
Sbjct: 1083 HLKSGQVLIVERDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQ 1142

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSIDSI 1159


>sp|B0Z5C9|RPOC2_OENPA DNA-directed RNA polymerase subunit beta'' OS=Oenothera parviflora
            GN=rpoC2 PE=3 SV=1
          Length = 1383

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            +L+S Q+LIVQ             ATPGA    HYG  L+ G+ +VTF+YEK RS D+T+
Sbjct: 1083 YLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDTVVTFLYEKSRSGDITQ 1142

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSVDSI 1159


>sp|B0Z545|RPOC2_OENGL DNA-directed RNA polymerase subunit beta'' OS=Oenothera glazioviana
            GN=rpoC2 PE=3 SV=1
          Length = 1383

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 13/77 (16%)

Query: 4    HLKSDQILIVQ-------------ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR 50
            +L+S Q+LIVQ             ATPGA    HYG  L+ G+ +VTF+YEK RS D+T+
Sbjct: 1083 YLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDTVVTFLYEKSRSGDITQ 1142

Query: 51   ALSKVKQVLEIRSFDLI 67
             L KV+QVLE+RS D I
Sbjct: 1143 GLPKVEQVLEVRSVDSI 1159


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.141    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,266,878
Number of Sequences: 539616
Number of extensions: 655675
Number of successful extensions: 2161
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2010
Number of HSP's gapped (non-prelim): 121
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)