Query 042693
Match_columns 71
No_of_seqs 100 out of 360
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 14:52:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lu0_D DNA-directed RNA polyme 99.7 8.9E-18 3E-22 142.7 2.4 52 15-66 1101-1152(1407)
2 1hqm_D DNA-directed RNA polyme 98.2 2E-07 6.9E-12 79.3 1.1 34 34-67 978-1012(1265)
3 2a6h_D DNA-directed RNA polyme 98.0 1.8E-06 6.3E-11 74.7 1.5 33 34-66 1237-1270(1524)
4 4ayb_C DNA-directed RNA polyme 97.3 5.6E-05 1.9E-09 55.9 1.6 31 34-64 86-116 (395)
5 2auk_A DNA-directed RNA polyme 97.3 0.0001 3.6E-09 50.8 2.5 30 13-42 159-189 (190)
6 2auk_A DNA-directed RNA polyme 96.9 0.001 3.4E-08 45.9 4.3 38 15-52 58-105 (190)
7 2xha_A NUSG, transcription ant 95.8 0.0072 2.5E-07 42.5 3.4 32 6-38 8-40 (193)
8 2xhc_A Transcription antitermi 94.3 0.041 1.4E-06 41.1 4.0 32 7-39 50-81 (352)
9 2xha_A NUSG, transcription ant 93.8 0.011 3.7E-07 41.6 -0.1 30 7-36 66-98 (193)
10 1twf_A B220, DNA-directed RNA 91.8 0.05 1.7E-06 47.9 1.3 30 34-63 1080-1109(1733)
11 1f3z_A EIIA-GLC, glucose-speci 91.3 0.14 4.7E-06 34.7 2.8 29 18-46 95-123 (161)
12 2k32_A A; NMR {Campylobacter j 90.5 0.12 4.2E-06 31.4 1.8 21 21-41 15-35 (116)
13 2xhc_A Transcription antitermi 89.7 0.043 1.5E-06 41.0 -0.9 22 15-36 115-138 (352)
14 1z6h_A Biotin/lipoyl attachmen 89.5 0.19 6.4E-06 27.8 1.9 21 21-41 13-33 (72)
15 2d5d_A Methylmalonyl-COA decar 89.5 0.21 7.3E-06 27.5 2.2 22 21-42 19-40 (74)
16 1z6h_A Biotin/lipoyl attachmen 89.0 0.39 1.3E-05 26.4 3.0 25 15-39 41-68 (72)
17 1brw_A PYNP, protein (pyrimidi 88.8 0.28 9.4E-06 37.6 3.0 39 4-42 340-401 (433)
18 2dsj_A Pyrimidine-nucleoside ( 88.8 0.29 1E-05 37.5 3.1 39 4-42 332-393 (423)
19 3lu0_D DNA-directed RNA polyme 88.2 0.26 9E-06 43.0 2.7 41 15-55 997-1047(1407)
20 3our_B EIIA, phosphotransferas 87.8 0.31 1E-05 34.0 2.4 28 18-45 117-144 (183)
21 1dcz_A Transcarboxylase 1.3S s 87.6 0.34 1.1E-05 27.1 2.2 21 21-41 22-42 (77)
22 2tpt_A Thymidine phosphorylase 87.2 0.27 9.1E-06 37.7 2.0 39 4-42 345-406 (440)
23 2lmc_B DNA-directed RNA polyme 87.2 0.089 3E-06 32.4 -0.5 21 15-35 61-81 (84)
24 3fpp_A Macrolide-specific effl 86.9 0.29 9.9E-06 34.1 1.9 27 15-41 36-65 (341)
25 2f1m_A Acriflavine resistance 86.8 0.22 7.4E-06 33.8 1.2 21 21-41 36-56 (277)
26 1iyu_A E2P, dihydrolipoamide a 86.7 0.29 9.9E-06 27.9 1.6 23 20-42 17-39 (79)
27 1qjo_A Dihydrolipoamide acetyl 86.6 0.31 1E-05 27.7 1.6 21 21-41 20-40 (80)
28 2l5t_A Lipoamide acyltransfera 85.9 0.79 2.7E-05 25.8 3.2 17 23-39 23-39 (77)
29 2gpr_A Glucose-permease IIA co 85.8 0.33 1.1E-05 32.5 1.7 29 18-46 90-118 (154)
30 1bdo_A Acetyl-COA carboxylase; 85.5 0.3 1E-05 27.8 1.2 24 19-42 23-46 (80)
31 3h5q_A PYNP, pyrimidine-nucleo 84.9 0.61 2.1E-05 35.8 3.0 36 4-39 343-401 (436)
32 2ejm_A Methylcrotonoyl-COA car 84.5 0.5 1.7E-05 28.4 1.9 22 21-42 28-49 (99)
33 1uou_A Thymidine phosphorylase 83.6 0.82 2.8E-05 35.5 3.2 39 4-42 377-436 (474)
34 1gjx_A Pyruvate dehydrogenase; 83.4 0.38 1.3E-05 27.4 1.0 22 21-42 21-42 (81)
35 3lnn_A Membrane fusion protein 83.4 0.39 1.3E-05 33.7 1.2 27 15-41 62-91 (359)
36 1ghj_A E2, E2, the dihydrolipo 83.0 0.4 1.4E-05 27.3 1.0 22 21-42 21-42 (79)
37 3crk_C Dihydrolipoyllysine-res 82.9 0.69 2.3E-05 27.0 2.0 22 21-42 25-46 (87)
38 1iyu_A E2P, dihydrolipoamide a 82.3 2.9 9.8E-05 23.5 4.5 26 15-40 46-74 (79)
39 1ax3_A Iiaglc, glucose permeas 81.8 0.45 1.5E-05 32.1 1.0 29 18-46 95-123 (162)
40 4dk0_A Putative MACA; alpha-ha 81.1 0.35 1.2E-05 33.9 0.3 22 20-41 45-66 (369)
41 2dn8_A Acetyl-COA carboxylase 79.9 0.79 2.7E-05 27.4 1.6 20 21-40 31-50 (100)
42 2dnc_A Pyruvate dehydrogenase 78.9 0.99 3.4E-05 27.3 1.8 22 21-42 27-48 (98)
43 3h0g_A DNA-directed RNA polyme 78.4 0.3 1E-05 43.2 -0.9 30 35-64 1084-1113(1752)
44 1vf7_A Multidrug resistance pr 78.3 0.66 2.3E-05 33.1 1.0 27 15-41 48-77 (369)
45 1k8m_A E2 component of branche 77.8 1 3.6E-05 26.8 1.6 22 21-42 24-45 (93)
46 2jku_A Propionyl-COA carboxyla 77.4 0.68 2.3E-05 27.6 0.7 22 21-42 39-60 (94)
47 2kcc_A Acetyl-COA carboxylase 75.3 1.3 4.5E-05 25.7 1.6 20 21-40 19-38 (84)
48 3ne5_B Cation efflux system pr 74.7 1.3 4.6E-05 32.3 1.8 26 15-40 126-155 (413)
49 2dne_A Dihydrolipoyllysine-res 73.8 1.2 4.2E-05 27.4 1.2 21 21-41 27-47 (108)
50 1ci3_M Protein (cytochrome F); 72.9 1.6 5.4E-05 31.9 1.8 23 15-37 207-229 (249)
51 1pmr_A Dihydrolipoyl succinylt 69.4 0.51 1.8E-05 27.0 -1.2 22 21-42 22-43 (80)
52 1hcz_A Cytochrome F; electron 68.7 2.3 7.7E-05 31.1 1.8 23 15-37 207-229 (252)
53 2jxm_B Cytochrome F; copper, e 67.2 2.1 7E-05 31.3 1.3 23 15-37 207-229 (249)
54 1y8o_B Dihydrolipoyllysine-res 66.6 3.1 0.00011 26.7 2.0 20 21-40 47-66 (128)
55 2k7v_A Dihydrolipoyllysine-res 66.5 3.5 0.00012 23.6 2.1 21 21-41 53-73 (85)
56 3fmc_A Putative succinylglutam 57.0 6.5 0.00022 28.8 2.5 28 13-40 293-322 (368)
57 3klr_A Glycine cleavage system 54.4 13 0.00045 23.9 3.4 26 18-43 32-60 (125)
58 3na6_A Succinylglutamate desuc 53.3 9.6 0.00033 27.4 2.8 28 13-40 260-289 (331)
59 1zko_A Glycine cleavage system 53.2 16 0.00055 23.6 3.7 26 18-43 45-73 (136)
60 1e2w_A Cytochrome F; electron 51.1 7.9 0.00027 28.3 2.1 23 15-37 208-230 (251)
61 1onl_A Glycine cleavage system 49.4 21 0.00071 22.7 3.7 26 18-43 36-64 (128)
62 1hpc_A H protein of the glycin 47.3 23 0.0008 22.6 3.7 26 18-43 36-64 (131)
63 1q90_A Apocytochrome F; membra 46.2 9.6 0.00033 28.3 1.9 25 15-39 208-232 (292)
64 3a7l_A H-protein, glycine clea 45.4 26 0.00088 22.3 3.7 26 18-43 37-65 (128)
65 3it5_A Protease LASA; metallop 43.1 9.4 0.00032 25.6 1.4 19 22-40 86-104 (182)
66 3cdx_A Succinylglutamatedesucc 41.0 24 0.00082 25.3 3.3 26 14-39 271-298 (354)
67 1qpo_A Quinolinate acid phosph 38.6 22 0.00074 25.5 2.7 19 21-39 75-93 (284)
68 3n6r_A Propionyl-COA carboxyla 37.1 16 0.00053 28.8 1.9 22 21-42 626-647 (681)
69 3no3_A Glycerophosphodiester p 35.5 12 0.00041 25.2 0.9 49 13-62 42-92 (238)
70 1zy8_K Pyruvate dehydrogenase 34.8 8.2 0.00028 26.8 0.0 21 21-41 23-43 (229)
71 2hsi_A Putative peptidase M23; 34.6 17 0.00059 26.0 1.7 19 20-38 231-249 (282)
72 2aze_B Transcription factor E2 32.9 34 0.0012 21.3 2.7 19 9-27 66-84 (106)
73 2dzq_A General transcription f 32.4 20 0.00068 22.7 1.5 19 49-67 60-78 (99)
74 3tzu_A GCVH, glycine cleavage 32.3 52 0.0018 21.4 3.6 26 18-43 49-77 (137)
75 3mxu_A Glycine cleavage system 32.2 53 0.0018 21.6 3.7 26 18-43 54-82 (143)
76 3tuf_B Stage II sporulation pr 32.1 19 0.00066 25.3 1.6 19 21-39 135-153 (245)
77 1x1o_A Nicotinate-nucleotide p 31.8 22 0.00074 25.5 1.8 18 22-39 77-94 (286)
78 2hd0_A Protease NS2-3 (P23); c 31.3 9.8 0.00034 25.2 -0.1 22 41-67 91-112 (128)
79 2b7n_A Probable nicotinate-nuc 30.6 35 0.0012 23.9 2.7 19 21-39 62-80 (273)
80 2bco_A Succinylglutamate desuc 30.2 34 0.0011 24.7 2.6 27 15-41 268-299 (350)
81 1o4u_A Type II quinolic acid p 30.0 24 0.00083 25.3 1.8 19 21-39 75-93 (285)
82 3hbl_A Pyruvate carboxylase; T 29.7 24 0.00081 29.8 1.9 22 21-42 1091-1112(1150)
83 1qwy_A Peptidoglycan hydrolase 29.0 25 0.00087 25.7 1.8 18 21-38 239-256 (291)
84 3dva_I Dihydrolipoyllysine-res 29.0 12 0.0004 28.2 0.0 21 22-42 23-43 (428)
85 3l0g_A Nicotinate-nucleotide p 28.7 30 0.001 25.4 2.1 19 21-39 88-106 (300)
86 1qap_A Quinolinic acid phospho 28.5 32 0.0011 24.7 2.2 24 16-39 82-107 (296)
87 3tqv_A Nicotinate-nucleotide p 28.0 27 0.00093 25.3 1.8 20 20-39 78-97 (287)
88 3csq_A Morphogenesis protein 1 27.9 19 0.00064 25.9 0.9 17 22-38 252-268 (334)
89 2dn5_A General transcription f 27.9 25 0.00084 21.9 1.4 18 49-66 60-77 (89)
90 3n6r_A Propionyl-COA carboxyla 27.6 85 0.0029 24.6 4.7 24 15-38 654-680 (681)
91 1vd6_A Glycerophosphoryl diest 27.3 15 0.0005 24.3 0.2 48 13-63 43-90 (224)
92 2qj8_A MLR6093 protein; struct 26.9 27 0.00091 24.7 1.6 26 15-40 262-289 (332)
93 3nyy_A Putative glycyl-glycine 26.7 28 0.00094 24.4 1.6 19 22-40 183-201 (252)
94 2gu1_A Zinc peptidase; alpha/b 26.6 30 0.001 25.0 1.8 18 21-38 284-301 (361)
95 4g65_A TRK system potassium up 26.5 58 0.002 24.1 3.4 27 28-61 430-456 (461)
96 3d4r_A Domain of unknown funct 26.5 35 0.0012 23.4 2.1 22 21-42 114-135 (169)
97 1ce3_A Protein (API); protease 26.2 47 0.0016 18.9 2.2 20 15-34 35-54 (54)
98 3va7_A KLLA0E08119P; carboxyla 25.2 74 0.0025 27.2 4.1 22 21-42 1181-1202(1236)
99 3r8s_W 50S ribosomal protein L 24.8 41 0.0014 20.3 1.9 17 23-39 16-32 (76)
100 3hbl_A Pyruvate carboxylase; T 24.2 77 0.0026 26.7 4.0 25 15-39 1119-1146(1150)
101 3rpd_A Methionine synthase (B1 23.4 15 0.00052 26.8 -0.3 19 46-64 20-38 (357)
102 3bg3_A Pyruvate carboxylase, m 23.3 23 0.00078 28.6 0.7 22 21-42 663-684 (718)
103 1vf5_C Cytochrome F; photosynt 23.2 13 0.00044 27.6 -0.7 25 15-39 211-235 (289)
104 1wxm_A A-RAF proto-oncogene se 23.0 71 0.0024 19.6 2.8 28 3-30 2-31 (86)
105 1q60_A General transcription f 22.7 38 0.0013 21.4 1.5 19 49-67 60-78 (99)
106 3hgb_A Glycine cleavage system 22.6 99 0.0034 20.6 3.7 26 18-43 59-87 (155)
107 3u9t_A MCC alpha, methylcroton 22.1 19 0.00064 28.3 0.0 22 21-42 616-637 (675)
108 2dzr_A General transcription f 21.7 41 0.0014 21.4 1.5 17 50-66 61-77 (99)
109 3gnn_A Nicotinate-nucleotide p 21.3 43 0.0015 24.4 1.8 20 20-39 89-108 (298)
110 4av5_A FIMH; cell adhesion, ba 21.2 50 0.0017 22.3 2.0 24 26-51 117-140 (158)
111 3paj_A Nicotinate-nucleotide p 21.2 44 0.0015 24.6 1.8 19 21-39 112-130 (320)
112 3v2d_0 50S ribosomal protein L 21.0 53 0.0018 20.2 1.9 17 23-39 25-41 (85)
113 3u5c_c S33, YS27, 40S ribosoma 20.7 1.2E+02 0.0042 17.8 3.4 35 7-41 22-60 (67)
114 2ed2_A General transcription f 20.4 45 0.0016 21.0 1.5 18 49-66 60-77 (99)
115 3g21_A GAG polyprotein, capsid 20.3 26 0.00088 21.3 0.3 8 46-54 5-12 (77)
116 2dn4_A General transcription f 20.3 44 0.0015 21.1 1.5 19 49-67 60-78 (99)
117 3ch0_A Glycerophosphodiester p 20.1 30 0.001 23.2 0.7 49 13-61 44-123 (272)
118 2jbm_A Nicotinate-nucleotide p 20.1 42 0.0014 23.9 1.5 19 21-39 75-93 (299)
No 1
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=99.67 E-value=8.9e-18 Score=142.74 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=50.6
Q ss_pred eCCCcEEEEecCcEEecCCeEEEEEeehhccCCccCchhhHhhhhhhcCCcc
Q 042693 15 ATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRSFDL 66 (71)
Q Consensus 15 ~~~ga~l~v~~G~~V~~G~~L~~l~~e~~kt~DItqGLPkVeeLfEAR~~~~ 66 (71)
+|.||+|.|++|+.|++||+||++|++..||+|||||||||+||||||+++.
T Consensus 1101 lp~~a~~~v~~g~~v~~g~vlakip~~~~k~~DIt~GLprv~eLfEar~pk~ 1152 (1407)
T 3lu0_D 1101 LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKE 1152 (1407)
T ss_dssp CCTTCCCCCCSSCEECTTCEEECCCCCCCCSSCCCCSHHHHHHHHTTCCCSS
T ss_pred cCCCcEEEecCCCEeccCceEEecchhhccccchhcCcHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999854
No 2
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D
Probab=98.24 E-value=2e-07 Score=79.27 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=22.3
Q ss_pred eEEEEEeehhcc-CCccCchhhHhhhhhhcCCccc
Q 042693 34 KLVTFIYEKLRS-CDLTRALSKVKQVLEIRSFDLI 67 (71)
Q Consensus 34 ~L~~l~~e~~kt-~DItqGLPkVeeLfEAR~~~~i 67 (71)
+|-||.+....+ .|||||||||+||||||+++..
T Consensus 978 TLrTFH~gGvas~~dIT~GLPRv~El~eArkpk~p 1012 (1265)
T 1hqm_D 978 TMRTFHTGGVAVGTDITQGLPRVIELFEARRPKAK 1012 (1265)
T ss_dssp CCCC--------CCTTSSHHHHHHHHHHCCCCSSC
T ss_pred eeEEEEEcceecccccccCchhHHHHHhhcCCCCc
Confidence 344678887774 8999999999999999998654
No 3
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=97.96 E-value=1.8e-06 Score=74.67 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=20.3
Q ss_pred eEEEEEeehhc-cCCccCchhhHhhhhhhcCCcc
Q 042693 34 KLVTFIYEKLR-SCDLTRALSKVKQVLEIRSFDL 66 (71)
Q Consensus 34 ~L~~l~~e~~k-t~DItqGLPkVeeLfEAR~~~~ 66 (71)
+|-|+.+.... ++|||||||||+||||||++.+
T Consensus 1237 TlrTFH~gGv~~~~dIt~GlPRv~El~eARkpk~ 1270 (1524)
T 2a6h_D 1237 TMRTFHTGGVAGAADITQGLPRVIELFEARRPKA 1270 (1524)
T ss_dssp CCC-----------CCCCSHHHHHHHHTTCCCSS
T ss_pred cceeeeeccccccccccccCcchhhheecccCCC
Confidence 55678887776 5799999999999999999854
No 4
>4ayb_C DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_C 4b1o_C 4b1p_Y 2waq_C 2wb1_C 3hkz_C 2pmz_C
Probab=97.35 E-value=5.6e-05 Score=55.91 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=16.7
Q ss_pred eEEEEEeehhccCCccCchhhHhhhhhhcCC
Q 042693 34 KLVTFIYEKLRSCDLTRALSKVKQVLEIRSF 64 (71)
Q Consensus 34 ~L~~l~~e~~kt~DItqGLPkVeeLfEAR~~ 64 (71)
+|=||.+.-..+.|||||+||+.|||+||+.
T Consensus 86 TLrTFH~gGva~~nvT~GlPRl~Ei~~a~k~ 116 (395)
T 4ayb_C 86 TLRTFHFAGIRELNVTLGLPRLIEIVDAKKV 116 (395)
T ss_dssp C-------------CCCSHHHHHHHHTCCSS
T ss_pred ccccceeeeecceeeecCccceEEecccccC
Confidence 4667888878888999999999999999975
No 5
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=97.31 E-value=0.0001 Score=50.83 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=27.8
Q ss_pred EE-eCCCcEEEEecCcEEecCCeEEEEEeeh
Q 042693 13 VQ-ATPGAISFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 13 i~-~~~ga~l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
.| +|+||++.+++|+.|++||+||++|++.
T Consensus 159 ~Y~LP~ga~i~v~dG~~V~~GdvLArip~e~ 189 (190)
T 2auk_A 159 QYFLPGKAIVQLEDGVQISSGDTLARIPQES 189 (190)
T ss_dssp EEECCTTCEESSCTTCEECTTCEEEEEECCC
T ss_pred EEECCCCCEEEEcCCCEEcCCCEEEEccccc
Confidence 44 9999999999999999999999999874
No 6
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=96.92 E-value=0.001 Score=45.85 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=31.0
Q ss_pred eCCCcEEEEecCcEEecCCeEEEE-----E-----eehhccCCccCch
Q 042693 15 ATPGAISFRHYGAFLHKGNKLVTF-----I-----YEKLRSCDLTRAL 52 (71)
Q Consensus 15 ~~~ga~l~v~~G~~V~~G~~L~~l-----~-----~e~~kt~DItqGL 52 (71)
+|.||+|+|++|+.|++|++||.. + --..+..||+.|.
T Consensus 58 ipyGa~L~V~dG~~V~~G~~laewDp~t~pIisE~~G~V~f~dii~G~ 105 (190)
T 2auk_A 58 VPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQ 105 (190)
T ss_dssp CCTTCEESSCTTCEECTTCEEEECCSSEEEEECSSCEEEEEESCCBTT
T ss_pred cCCCCEEEecCCCEEcCCCEEEEEcCcCCcEEeccccEEEEEeccCCc
Confidence 999999999999999999999982 2 2345667887664
No 7
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.79 E-value=0.0072 Score=42.53 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=27.6
Q ss_pred CCCcEEEEE-eCCCcEEEEecCcEEecCCeEEEE
Q 042693 6 KSDQILIVQ-ATPGAISFRHYGAFLHKGNKLVTF 38 (71)
Q Consensus 6 ~sGqii~i~-~~~ga~l~v~~G~~V~~G~~L~~l 38 (71)
.+|.. .-| +|.||.|+|++|+.|++|++||..
T Consensus 8 ~~gre-er~~IpyGA~L~V~dG~~VkkG~~laeW 40 (193)
T 2xha_A 8 ATSPS-ERLILSPKAKLHVNNGKDVNKGDLIAEE 40 (193)
T ss_dssp TCCCS-EEEEECTTCEESCCTTCEECTTCEEEEE
T ss_pred CCCCE-EEEECCCCCEEEECCCCEEcCCCEEEEe
Confidence 45666 545 999999999999999999999984
No 8
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=94.31 E-value=0.041 Score=41.15 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=26.5
Q ss_pred CCcEEEEEeCCCcEEEEecCcEEecCCeEEEEE
Q 042693 7 SDQILIVQATPGAISFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 7 sGqii~i~~~~ga~l~v~~G~~V~~G~~L~~l~ 39 (71)
++. ....+|-||.|+|++|+.|++|+.||...
T Consensus 50 ~~~-~~~~vpyga~l~v~~g~~V~~g~~la~wd 81 (352)
T 2xhc_A 50 SPS-ERLILSPKAKLHVNNGKDVNKGDLIAEEP 81 (352)
T ss_dssp SCS-EEEEECTTCEESCCTTCEECTTCEEEEEC
T ss_pred cCc-eEEEcCCCCEEEecCCCEEcCCCEEEEec
Confidence 344 34449999999999999999999999843
No 9
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=93.75 E-value=0.011 Score=41.59 Aligned_cols=30 Identities=13% Similarity=-0.015 Sum_probs=25.2
Q ss_pred CCcEEEEE-eCCCcEEE--EecCcEEecCCeEE
Q 042693 7 SDQILIVQ-ATPGAISF--RHYGAFLHKGNKLV 36 (71)
Q Consensus 7 sGqii~i~-~~~ga~l~--v~~G~~V~~G~~L~ 36 (71)
+|.+...| +|.||+|. +++|+.|++||+||
T Consensus 66 ~G~~~~~Y~LPvgA~l~~~V~dG~~V~~GdvLA 98 (193)
T 2xha_A 66 DRKYTKTYYIPESAGIEPGLRVGTKVKQGLPLS 98 (193)
T ss_dssp TSSCEEEEEEEGGGCCCTTCCTTCEECTTSBSS
T ss_pred CCCEeEEEEcCCCCEEEEEcCCCCEEcCCCEEe
Confidence 45433444 99999999 99999999999998
No 10
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=91.77 E-value=0.05 Score=47.87 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=18.0
Q ss_pred eEEEEEeehhccCCccCchhhHhhhhhhcC
Q 042693 34 KLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63 (71)
Q Consensus 34 ~L~~l~~e~~kt~DItqGLPkVeeLfEAR~ 63 (71)
+|=||.+....+.++|+|+||+.||+.|++
T Consensus 1080 TLnTFHfAGva~~NVTLGVPRLkEIinask 1109 (1733)
T 1twf_A 1080 TLNTFHFAGVASKKVTSGVPRLKEILNVAK 1109 (1733)
T ss_dssp CC----------CCSCCHHHHHHHHTTTCS
T ss_pred cccccccccccccCcccCcHHHHHHHHhcc
Confidence 567888888888899999999999999954
No 11
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=91.30 E-value=0.14 Score=34.69 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=23.6
Q ss_pred CcEEEEecCcEEecCCeEEEEEeehhccC
Q 042693 18 GAISFRHYGAFLHKGNKLVTFIYEKLRSC 46 (71)
Q Consensus 18 ga~l~v~~G~~V~~G~~L~~l~~e~~kt~ 46 (71)
|-..+|+.||.|++|+.|+++..+.++..
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~ 123 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFDLPLLEEK 123 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEECHHHHHHH
T ss_pred ccEEEEeCcCEECCCCEEEEECHHHHHhc
Confidence 33447889999999999999998777653
No 12
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=90.50 E-value=0.12 Score=31.35 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.2
Q ss_pred EEEecCcEEecCCeEEEEEee
Q 042693 21 SFRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e 41 (71)
++++.|+.|++|++|+++--.
T Consensus 15 v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 15 KLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp ECSCTTSEECTTCEEEEEECT
T ss_pred EECCCcCEECCCCEEEEECHH
Confidence 357899999999999999765
No 13
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=89.67 E-value=0.043 Score=41.04 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=21.7
Q ss_pred eCCCcEEE--EecCcEEecCCeEE
Q 042693 15 ATPGAISF--RHYGAFLHKGNKLV 36 (71)
Q Consensus 15 ~~~ga~l~--v~~G~~V~~G~~L~ 36 (71)
+|.||+|. +++|+.|++||+||
T Consensus 115 lp~ga~l~~~v~~g~~v~~G~vla 138 (352)
T 2xhc_A 115 IPESAGIEPGLRVGTKVKQGLPLS 138 (352)
T ss_dssp EEGGGCBCTTCCTTCEECTTCBSB
T ss_pred cCCCcEEEEecCCCCEEccCcEEe
Confidence 99999999 99999999999999
No 14
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=89.55 E-value=0.19 Score=27.82 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=17.5
Q ss_pred EEEecCcEEecCCeEEEEEee
Q 042693 21 SFRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e 41 (71)
++++.|+.|++|++|+++--.
T Consensus 13 ~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 13 VHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp ECCCTTCEECTTCEEEEEEET
T ss_pred EEcCCcCEECCCCEEEEEECC
Confidence 467889999999999998643
No 15
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=89.51 E-value=0.21 Score=27.53 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=18.4
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++++.|+.|++|++|+++--.+
T Consensus 19 ~~v~~G~~V~~G~~l~~i~~~~ 40 (74)
T 2d5d_A 19 VLVRVGDRVRVGQGLLVLEAMK 40 (74)
T ss_dssp ECCCTTCEECTTCEEEEEEETT
T ss_pred EEcCCCCEeCCCCEEEEEeccc
Confidence 4688999999999999987543
No 16
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=88.98 E-value=0.39 Score=26.44 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=19.8
Q ss_pred eCCCcEE---EEecCcEEecCCeEEEEE
Q 042693 15 ATPGAIS---FRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 15 ~~~ga~l---~v~~G~~V~~G~~L~~l~ 39 (71)
+|..+++ +++.|+.|.+|++|+++.
T Consensus 41 ap~~G~v~~~~v~~G~~V~~G~~l~~i~ 68 (72)
T 1z6h_A 41 ADRSGIVKEVKKKEGDFVNEGDVLLELS 68 (72)
T ss_dssp CSSCEEEEEESSCTTCEECTTCEEEEEG
T ss_pred CCCCcEEEEEecCCCCEECCCCEEEEEe
Confidence 5655554 588999999999999874
No 17
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=88.79 E-value=0.28 Score=37.58 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=32.8
Q ss_pred CCCCCcEEEEE-----------------------eCCCcEEEEecCcEEecCCeEEEEEeeh
Q 042693 4 HLKSDQILIVQ-----------------------ATPGAISFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 4 ~~~sGqii~i~-----------------------~~~ga~l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
.+++|.|..|. ...|-.+|.+-||.|++|++|+++.++.
T Consensus 340 a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 340 AAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred cCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 46788887777 3457889999999999999999999874
No 18
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.75 E-value=0.29 Score=37.47 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=32.9
Q ss_pred CCCCCcEEEEE-----------------------eCCCcEEEEecCcEEecCCeEEEEEeeh
Q 042693 4 HLKSDQILIVQ-----------------------ATPGAISFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 4 ~~~sGqii~i~-----------------------~~~ga~l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
.+++|.|..|. ...|-.+|.+-||.|++|++|+++.++.
T Consensus 332 a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 332 AEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp CSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred cCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 46788888877 3457889999999999999999999874
No 19
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=88.20 E-value=0.26 Score=43.04 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=32.5
Q ss_pred eCCCcEEEEecCcEEecCCeEEEEE----------eehhccCCccCchhhH
Q 042693 15 ATPGAISFRHYGAFLHKGNKLVTFI----------YEKLRSCDLTRALSKV 55 (71)
Q Consensus 15 ~~~ga~l~v~~G~~V~~G~~L~~l~----------~e~~kt~DItqGLPkV 55 (71)
+|.||.|+|++|+.|++|++|+..- .-..+..||+.|.-=-
T Consensus 997 ip~gs~l~v~~g~~V~~g~~ia~wDp~~~piise~~G~v~f~d~~~g~t~~ 1047 (1407)
T 3lu0_D 997 VPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTIT 1047 (1407)
T ss_dssp ECTTCEESSCSSCEECTTCEEEECCSSCCCEECSSCEEEEEESCCBTTTEE
T ss_pred cCCCCEEEEcCCCEecCCCEEEEEecCceeEEeccceEEEEeeeccCceeE
Confidence 9999999999999999999999763 3345666777775433
No 20
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=87.81 E-value=0.31 Score=33.96 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=24.5
Q ss_pred CcEEEEecCcEEecCCeEEEEEeehhcc
Q 042693 18 GAISFRHYGAFLHKGNKLVTFIYEKLRS 45 (71)
Q Consensus 18 ga~l~v~~G~~V~~G~~L~~l~~e~~kt 45 (71)
|=..+|+.||.|++||.|+++-.+.++.
T Consensus 117 gF~~~V~~Gd~Vk~Gd~L~~fD~~~Ik~ 144 (183)
T 3our_B 117 GFTRIAEEGQTVKAGDTVIEFDLALLEE 144 (183)
T ss_dssp TEEECSCTTCEECTTCEEEEECHHHHHH
T ss_pred cceEEEeCcCEEcCCCEEEEECHHHHHH
Confidence 5567899999999999999999888764
No 21
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=87.61 E-value=0.34 Score=27.15 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=17.9
Q ss_pred EEEecCcEEecCCeEEEEEee
Q 042693 21 SFRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e 41 (71)
++++.|+.|++|++|+++--.
T Consensus 22 ~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 22 ILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp ECCCTTCEECTTSEEEEEEET
T ss_pred EEcCCcCEEcCCCEEEEEEcc
Confidence 468899999999999998753
No 22
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=87.25 E-value=0.27 Score=37.75 Aligned_cols=39 Identities=8% Similarity=0.028 Sum_probs=33.0
Q ss_pred CCCCCcEEEEE-----------------------eCCCcEEEEecCcEEecCCeEEEEEeeh
Q 042693 4 HLKSDQILIVQ-----------------------ATPGAISFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 4 ~~~sGqii~i~-----------------------~~~ga~l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
.+++|.|..|. ...|-.+|.+-||.|++|++|+++.++.
T Consensus 345 a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 345 ADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp CSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred cCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 56788888887 3457788999999999999999999874
No 23
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=87.24 E-value=0.089 Score=32.44 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=20.0
Q ss_pred eCCCcEEEEecCcEEecCCeE
Q 042693 15 ATPGAISFRHYGAFLHKGNKL 35 (71)
Q Consensus 15 ~~~ga~l~v~~G~~V~~G~~L 35 (71)
+|.++.|.|++||+|.+|+.|
T Consensus 61 Ip~~~~l~V~eGd~V~~G~~L 81 (84)
T 2lmc_B 61 IPKWRQLNVFEGERVERGDVI 81 (84)
T ss_dssp CCTTSCCSSCTTEEECBSCSS
T ss_pred CCCCCceEeCCCCEECCCCCc
Confidence 999999999999999999976
No 24
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=86.95 E-value=0.29 Score=34.09 Aligned_cols=27 Identities=19% Similarity=-0.036 Sum_probs=21.1
Q ss_pred eCCCcEE---EEecCcEEecCCeEEEEEee
Q 042693 15 ATPGAIS---FRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 15 ~~~ga~l---~v~~G~~V~~G~~L~~l~~e 41 (71)
.+.++.+ +++.|+.|++|++|++|--.
T Consensus 36 ~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 36 AQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp CSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred ccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 4444444 68999999999999999754
No 25
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=86.80 E-value=0.22 Score=33.84 Aligned_cols=21 Identities=14% Similarity=-0.015 Sum_probs=18.3
Q ss_pred EEEecCcEEecCCeEEEEEee
Q 042693 21 SFRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e 41 (71)
++++.|+.|++|++|++|--.
T Consensus 36 v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 36 RNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp ECSCTTCEECTTSCSEEECCH
T ss_pred EEcCCCCEecCCCEEEEECcH
Confidence 368999999999999999754
No 26
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=86.72 E-value=0.29 Score=27.86 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=18.6
Q ss_pred EEEEecCcEEecCCeEEEEEeeh
Q 042693 20 ISFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 20 ~l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
.++++.||.|++|++|+.+--.+
T Consensus 17 ~~~v~~Gd~V~~G~~l~~le~~k 39 (79)
T 1iyu_A 17 ELLVKTGDLIEVEQGLVVLESAK 39 (79)
T ss_dssp EECCCTTCBCCSSSEEEEEECSS
T ss_pred EEecCCCCEEcCCCEEEEEEccc
Confidence 45678999999999999986543
No 27
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=86.58 E-value=0.31 Score=27.67 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=17.3
Q ss_pred EEEecCcEEecCCeEEEEEee
Q 042693 21 SFRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e 41 (71)
++++.|+.|++|++|+++--.
T Consensus 20 ~~v~~G~~V~~G~~l~~ie~~ 40 (80)
T 1qjo_A 20 VMVKVGDKVAAEQSLITVEGD 40 (80)
T ss_dssp CCCCTTCEECBTSEEEEEESS
T ss_pred EEcCCCCEECCCCEEEEEEcC
Confidence 357899999999999998643
No 28
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=85.91 E-value=0.79 Score=25.77 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=8.7
Q ss_pred EecCcEEecCCeEEEEE
Q 042693 23 RHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 23 v~~G~~V~~G~~L~~l~ 39 (71)
++.|+.|++|++|+.+-
T Consensus 23 v~~G~~V~~G~~l~~ie 39 (77)
T 2l5t_A 23 VKEGDMVEKDQDLVEVM 39 (77)
T ss_dssp CCTTCEECSCCCCCEEE
T ss_pred eCCCCEECCCCEEEEEE
Confidence 34455555555555543
No 29
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=85.77 E-value=0.33 Score=32.45 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=24.1
Q ss_pred CcEEEEecCcEEecCCeEEEEEeehhccC
Q 042693 18 GAISFRHYGAFLHKGNKLVTFIYEKLRSC 46 (71)
Q Consensus 18 ga~l~v~~G~~V~~G~~L~~l~~e~~kt~ 46 (71)
|-.++|+.||.|++|+.|+++..+.++..
T Consensus 90 gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~ 118 (154)
T 2gpr_A 90 GFESFVTQDQEVNAGDKLVTVDLKSVAKK 118 (154)
T ss_dssp SEEECCCTTCEECTTCEEEEECHHHHHHH
T ss_pred ceEEEEcCCCEEcCCCEEEEECHHHHHhc
Confidence 44468899999999999999998777653
No 30
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=85.51 E-value=0.3 Score=27.79 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=19.0
Q ss_pred cEEEEecCcEEecCCeEEEEEeeh
Q 042693 19 AISFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 19 a~l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
+..+++.|+.|++|++|+++--.+
T Consensus 23 ~~~~v~~G~~V~~G~~l~~ie~~k 46 (80)
T 1bdo_A 23 AKAFIEVGQKVNVGDTLCIVEAMK 46 (80)
T ss_dssp SCCSCCTTCEECTTCEEEEEEETT
T ss_pred cccccCCcCEECCCCEEEEEEecc
Confidence 334688999999999999986533
No 31
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=84.94 E-value=0.61 Score=35.83 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCCCCcEEEEE-----------------------eCCCcEEEEecCcEEecCCeEEEEE
Q 042693 4 HLKSDQILIVQ-----------------------ATPGAISFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 4 ~~~sGqii~i~-----------------------~~~ga~l~v~~G~~V~~G~~L~~l~ 39 (71)
.+.+|.|..|. ...|-.+|.+-||.|++|++|+++.
T Consensus 343 a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 343 AKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp CSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred cCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 46788888887 2457788999999999999999998
No 32
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=84.52 E-value=0.5 Score=28.37 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.1
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++++.|+.|++|++|+++--.+
T Consensus 28 ~~v~~Gd~V~~Gq~L~~ie~~~ 49 (99)
T 2ejm_A 28 VFVKAGDKVKAGDSLMVMIAMK 49 (99)
T ss_dssp ECCCTTEEECSSCEEEEEESSS
T ss_pred EECCCCCEECCCCEEEEEEccc
Confidence 4678999999999999986433
No 33
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=83.57 E-value=0.82 Score=35.48 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=32.7
Q ss_pred CCCCCcEEEEE----------e-----------CCCcEEEEecCcEEecCCeEEEEEeeh
Q 042693 4 HLKSDQILIVQ----------A-----------TPGAISFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 4 ~~~sGqii~i~----------~-----------~~ga~l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
.+++|.|..|. + ..|-.+|.+-||.|++|++|+++.++.
T Consensus 377 a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 377 APADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp CSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred CCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCC
Confidence 46778777777 1 578899999999999999999999863
No 34
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=83.44 E-value=0.38 Score=27.40 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=17.9
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++++.||.|++|++|+.+--.+
T Consensus 21 ~~v~~Gd~V~~G~~l~~ie~~k 42 (81)
T 1gjx_A 21 VEVNVGDTIAVDDTLITLETDK 42 (81)
T ss_dssp ECCCSSCBCCSSCCCEEEECSS
T ss_pred EEcCCCCEECCCCEEEEEEeCC
Confidence 4577899999999999986443
No 35
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=83.36 E-value=0.39 Score=33.66 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=21.0
Q ss_pred eCCCcEE---EEecCcEEecCCeEEEEEee
Q 042693 15 ATPGAIS---FRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 15 ~~~ga~l---~v~~G~~V~~G~~L~~l~~e 41 (71)
.+..+.+ +++.|+.|++|++|++|-..
T Consensus 62 ~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 62 PPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp CSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred ccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 4444444 68999999999999999754
No 36
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=83.03 E-value=0.4 Score=27.27 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=17.8
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++++.||.|++|++|+.+--.+
T Consensus 21 ~~v~~Gd~V~~G~~l~~ie~~k 42 (79)
T 1ghj_A 21 WHKKPGEAVKRDELIVDIETDK 42 (79)
T ss_dssp CSSCTTSEECSSCEEEEEECSS
T ss_pred EEcCCCCEECCCCEEEEEEccc
Confidence 3578999999999999986443
No 37
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=82.88 E-value=0.69 Score=26.98 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=18.0
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++++.||.|++|++|+.+--.+
T Consensus 25 ~~v~~Gd~V~~G~~l~~ie~~k 46 (87)
T 3crk_C 25 WEKKVGEKLSEGDLLAEIETDX 46 (87)
T ss_dssp ECSCTTCEECTTCEEEEEECSS
T ss_pred EEcCCCCEEcCCCEEEEEECCc
Confidence 4678999999999999886443
No 38
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=82.27 E-value=2.9 Score=23.52 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=20.3
Q ss_pred eCCCcE---EEEecCcEEecCCeEEEEEe
Q 042693 15 ATPGAI---SFRHYGAFLHKGNKLVTFIY 40 (71)
Q Consensus 15 ~~~ga~---l~v~~G~~V~~G~~L~~l~~ 40 (71)
.|..++ ++++.|+.|..|++|+++..
T Consensus 46 Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 46 SPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp CSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred CCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 555555 45789999999999998853
No 39
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=81.76 E-value=0.45 Score=32.10 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.1
Q ss_pred CcEEEEecCcEEecCCeEEEEEeehhccC
Q 042693 18 GAISFRHYGAFLHKGNKLVTFIYEKLRSC 46 (71)
Q Consensus 18 ga~l~v~~G~~V~~G~~L~~l~~e~~kt~ 46 (71)
|-..+|+.||.|++|+.|+++..+.++..
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~ 123 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVDLDAVKPN 123 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEECHHHHGGG
T ss_pred ccEEEEeCCCEEcCCCEEEEECHHHHHhc
Confidence 34457889999999999999998887754
No 40
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=81.06 E-value=0.35 Score=33.93 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.0
Q ss_pred EEEEecCcEEecCCeEEEEEee
Q 042693 20 ISFRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 20 ~l~v~~G~~V~~G~~L~~l~~e 41 (71)
.++++.|+.|++|++|++|-..
T Consensus 45 ~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 45 KLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp EECCCTTSCCCSSCCCEECCCH
T ss_pred EEEECCCCEECCCCEEEEEcCH
Confidence 3578999999999999999754
No 41
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.90 E-value=0.79 Score=27.43 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=17.1
Q ss_pred EEEecCcEEecCCeEEEEEe
Q 042693 21 SFRHYGAFLHKGNKLVTFIY 40 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~ 40 (71)
++++.|+.|++|++|+.+--
T Consensus 31 ~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 31 YTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp ESSCTTEEECTTCEEEEEEE
T ss_pred EEcCCcCEECCCCEEEEEEe
Confidence 36789999999999999864
No 42
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.86 E-value=0.99 Score=27.28 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=17.8
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++++.||.|++|++|+.+--.+
T Consensus 27 ~~v~~Gd~V~~G~~L~~ie~~K 48 (98)
T 2dnc_A 27 WLKKEGEAVSAGDALCEIETDK 48 (98)
T ss_dssp ESSCTTCEECTTSEEEEEECSS
T ss_pred EEcCCCCEeCCCCEEEEEEccc
Confidence 4678999999999999886443
No 43
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=78.38 E-value=0.3 Score=43.22 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=24.7
Q ss_pred EEEEEeehhccCCccCchhhHhhhhhhcCC
Q 042693 35 LVTFIYEKLRSCDLTRALSKVKQVLEIRSF 64 (71)
Q Consensus 35 L~~l~~e~~kt~DItqGLPkVeeLfEAR~~ 64 (71)
|=||.|....+.++|+|+||+.|++.|++.
T Consensus 1084 LnTFHfAGvas~NVTlGVPRLkEIInask~ 1113 (1752)
T 3h0g_A 1084 LNTFHYAGVSSKNVTLGVPRLKEILNVAKN 1113 (1752)
T ss_dssp HHTTSSCCCCCSSCCCSGGGHHHHHTTCSC
T ss_pred HHhhhhccccccccccCcccHHHHHhhhcC
Confidence 446667777778999999999999999765
No 44
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=78.29 E-value=0.66 Score=33.15 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=20.8
Q ss_pred eCCCcEE---EEecCcEEecCCeEEEEEee
Q 042693 15 ATPGAIS---FRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 15 ~~~ga~l---~v~~G~~V~~G~~L~~l~~e 41 (71)
.+..+.| +++.|+.|++|++|++|--.
T Consensus 48 a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 48 PQVNGIILKRLFKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp CSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred eeCceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 4444444 68999999999999999644
No 45
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=77.76 E-value=1 Score=26.82 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=17.6
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++++.||.|++|++|+.+--.+
T Consensus 24 ~~v~~Gd~V~~G~~l~~ie~~K 45 (93)
T 1k8m_A 24 WYVKEGDTVSQFDSICEVQSDK 45 (93)
T ss_dssp ECCCTTCEECSSSCCEEEECSS
T ss_pred EEcCCcCEECCCCEEEEEEcCC
Confidence 4578899999999999885443
No 46
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=77.39 E-value=0.68 Score=27.57 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=17.5
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++++.|+.|++|++|+++--.+
T Consensus 39 ~~v~~Gd~V~~Gq~L~~ie~~k 60 (94)
T 2jku_A 39 VSVKPGDAVAEGQEICVIEAMK 60 (94)
T ss_dssp ECCCTTCCCCTTCCCEEEEC--
T ss_pred EECCCCCEEcCCCEEEEEeccc
Confidence 3678999999999999987544
No 47
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=75.29 E-value=1.3 Score=25.69 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=16.5
Q ss_pred EEEecCcEEecCCeEEEEEe
Q 042693 21 SFRHYGAFLHKGNKLVTFIY 40 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~ 40 (71)
+.++.|+.|++|++|+.+--
T Consensus 19 ~~v~~Gd~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 19 YTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp ESSCTTEEECTTCEEEEEEC
T ss_pred EECCCCCEECCCCEEEEEEe
Confidence 35678899999999998863
No 48
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=74.68 E-value=1.3 Score=32.31 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=20.0
Q ss_pred eCCCcEE---EE-ecCcEEecCCeEEEEEe
Q 042693 15 ATPGAIS---FR-HYGAFLHKGNKLVTFIY 40 (71)
Q Consensus 15 ~~~ga~l---~v-~~G~~V~~G~~L~~l~~ 40 (71)
.+..+.+ +| +.||.|++|++|++|-.
T Consensus 126 a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~ 155 (413)
T 3ne5_B 126 ARAAGFIDKVYPLTVGDKVQKGTPLLDLTI 155 (413)
T ss_dssp CSSCEEEEEECSCCTTCEECTTCEEEEEEC
T ss_pred cccCEEEEEEEeCCCCCEEcCCCEEEEEcC
Confidence 4444444 56 89999999999999983
No 49
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=73.79 E-value=1.2 Score=27.43 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=16.9
Q ss_pred EEEecCcEEecCCeEEEEEee
Q 042693 21 SFRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e 41 (71)
++++.||.|++|++|+.+--.
T Consensus 27 ~~v~~Gd~V~~G~~L~~iE~~ 47 (108)
T 2dne_A 27 WEKKEGDKINEGDLIAEVETD 47 (108)
T ss_dssp CSSCTTCEECTTSEEEEEECS
T ss_pred EEcCCCCEecCCCEEEEEEcC
Confidence 357889999999999988543
No 50
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=72.93 E-value=1.6 Score=31.91 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.9
Q ss_pred eCCCcEEEEecCcEEecCCeEEE
Q 042693 15 ATPGAISFRHYGAFLHKGNKLVT 37 (71)
Q Consensus 15 ~~~ga~l~v~~G~~V~~G~~L~~ 37 (71)
+|+|..|.|+.||.|+.+.+|-.
T Consensus 207 iP~Gp~LiV~~G~~v~~~qpLTn 229 (249)
T 1ci3_M 207 IPAGPELIVSEGEEVAAGAALTN 229 (249)
T ss_dssp ECSSSCBCCCTTCEECTTCBSBC
T ss_pred cCCCCeEEEecCCEEecCCcccc
Confidence 99999999999999999998753
No 51
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=69.37 E-value=0.51 Score=26.98 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=17.9
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++++.||.|++|++|+.+--.+
T Consensus 22 ~~v~~Gd~V~~G~~l~~ie~~k 43 (80)
T 1pmr_A 22 WHKKPGDAVVRDEVLVEIETDK 43 (80)
T ss_dssp CCCCTTCCBSSSCCBCBCCSSS
T ss_pred EECCCcCEECCCCEEEEEEccc
Confidence 4688999999999999875443
No 52
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=68.71 E-value=2.3 Score=31.12 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.9
Q ss_pred eCCCcEEEEecCcEEecCCeEEE
Q 042693 15 ATPGAISFRHYGAFLHKGNKLVT 37 (71)
Q Consensus 15 ~~~ga~l~v~~G~~V~~G~~L~~ 37 (71)
+|+|..|.|+.||.|+.+.+|-.
T Consensus 207 iP~GpeLiV~~G~~v~~~qpLTn 229 (252)
T 1hcz_A 207 IPRGLELLVSEGESIKLDQPLTS 229 (252)
T ss_dssp ECTTCCBCCCTTCEECTTCBSBC
T ss_pred cCCCCeEEEecCCEEecCCcccc
Confidence 89999999999999999998754
No 53
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=67.18 E-value=2.1 Score=31.28 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.0
Q ss_pred eCCCcEEEEecCcEEecCCeEEE
Q 042693 15 ATPGAISFRHYGAFLHKGNKLVT 37 (71)
Q Consensus 15 ~~~ga~l~v~~G~~V~~G~~L~~ 37 (71)
+|+|..|.|+.||.|+.+.+|-.
T Consensus 207 iP~Gp~LiV~~G~~v~~~qpLTn 229 (249)
T 2jxm_B 207 ILPGPELIVAVGDTVEAGQLLTT 229 (249)
T ss_dssp ECSSSCBCCCTTCEECTTCBSBC
T ss_pred cCCCCeEEEecCCEEecCCcccc
Confidence 99999999999999999998753
No 54
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=66.60 E-value=3.1 Score=26.70 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.2
Q ss_pred EEEecCcEEecCCeEEEEEe
Q 042693 21 SFRHYGAFLHKGNKLVTFIY 40 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~ 40 (71)
++++.||.|++||+|+.+--
T Consensus 47 ~~V~~Gd~V~~Gd~L~~iEa 66 (128)
T 1y8o_B 47 WEKKVGEKLSEGDLLAEIET 66 (128)
T ss_dssp ECSCTTCEECTTCEEEEEEC
T ss_pred EecCCCCEecCCCEEEEEEc
Confidence 46788999999999988753
No 55
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=66.52 E-value=3.5 Score=23.65 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.5
Q ss_pred EEEecCcEEecCCeEEEEEee
Q 042693 21 SFRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e 41 (71)
++++.|+.|..|++|+++...
T Consensus 53 ~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 53 LKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp ECSCTTCCBCTTSEEEEEECC
T ss_pred EEeCCCCEECCCCEEEEEEcC
Confidence 467889999999999998754
No 56
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=57.02 E-value=6.5 Score=28.84 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=23.8
Q ss_pred EEeCCCcEEE--EecCcEEecCCeEEEEEe
Q 042693 13 VQATPGAISF--RHYGAFLHKGNKLVTFIY 40 (71)
Q Consensus 13 i~~~~ga~l~--v~~G~~V~~G~~L~~l~~ 40 (71)
+++|.++.++ ++.|+.|++|++|+++.-
T Consensus 293 v~A~~~Gl~~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 293 FHAPKAGMVEYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EECSSCEEEEECSCTTCCBCTTCEEEEEEC
T ss_pred EecCCCEEEEEeCCCCCEeCCCCEEEEEEc
Confidence 4488888884 789999999999999874
No 57
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=54.43 E-value=13 Score=23.90 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.3
Q ss_pred CcEEEE---ecCcEEecCCeEEEEEeehh
Q 042693 18 GAISFR---HYGAFLHKGNKLVTFIYEKL 43 (71)
Q Consensus 18 ga~l~v---~~G~~V~~G~~L~~l~~e~~ 43 (71)
|.++++ +-|+.|++|++++++-..+.
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~ 60 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKA 60 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSC
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcce
Confidence 778887 67999999999999954443
No 58
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=53.25 E-value=9.6 Score=27.35 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=22.5
Q ss_pred EEeCCCcEEE--EecCcEEecCCeEEEEEe
Q 042693 13 VQATPGAISF--RHYGAFLHKGNKLVTFIY 40 (71)
Q Consensus 13 i~~~~ga~l~--v~~G~~V~~G~~L~~l~~ 40 (71)
+++|.+..++ ++-||.|++|++|+++.-
T Consensus 260 v~A~~~Gl~~~~v~~Gd~V~~G~~la~I~d 289 (331)
T 3na6_A 260 LFSEHDGLFEIMIDLGEPVQEGDLVARVWS 289 (331)
T ss_dssp EECSSCEEEEESSCTTCEECTTCEEEEEEC
T ss_pred EeCCCCeEEEEcCCCCCEEcCCCEEEEEEc
Confidence 3477777774 689999999999999763
No 59
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=53.18 E-value=16 Score=23.64 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=21.5
Q ss_pred CcEEEE---ecCcEEecCCeEEEEEeehh
Q 042693 18 GAISFR---HYGAFLHKGNKLVTFIYEKL 43 (71)
Q Consensus 18 ga~l~v---~~G~~V~~G~~L~~l~~e~~ 43 (71)
|.+.++ +.|+.|++|++|+.+-..+.
T Consensus 45 G~i~~V~lp~vGd~V~~Gd~l~~VEs~K~ 73 (136)
T 1zko_A 45 GDVVYVDLPEVGREVKKGEVVASIESVKA 73 (136)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSC
T ss_pred CCcEEEEecCCCCEEeCCCEEEEEEEccE
Confidence 667777 99999999999999865543
No 60
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=51.08 E-value=7.9 Score=28.25 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=21.1
Q ss_pred eCCCcEEEEecCcEEecCCeEEE
Q 042693 15 ATPGAISFRHYGAFLHKGNKLVT 37 (71)
Q Consensus 15 ~~~ga~l~v~~G~~V~~G~~L~~ 37 (71)
+|+|..|.|+.||.|+.+.+|-.
T Consensus 208 iP~Gp~LiV~~G~~v~~~qpLTn 230 (251)
T 1e2w_A 208 IPAGPDLIVKEGQTVQADQPLTN 230 (251)
T ss_dssp ECSSSCBCCCTTCEECTTCBCBC
T ss_pred cCCCCeEEEecCCEEecCCcccc
Confidence 99999999999999999998853
No 61
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=49.40 E-value=21 Score=22.73 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.6
Q ss_pred CcEEEE---ecCcEEecCCeEEEEEeehh
Q 042693 18 GAISFR---HYGAFLHKGNKLVTFIYEKL 43 (71)
Q Consensus 18 ga~l~v---~~G~~V~~G~~L~~l~~e~~ 43 (71)
|.+.++ +-|+.|++|++|+.+-..|.
T Consensus 36 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~ 64 (128)
T 1onl_A 36 GDVVYVELPEVGRVVEKGEAVAVVESVKT 64 (128)
T ss_dssp CSEEEEECBCTTCEECTTCEEEEEEESSB
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEEcce
Confidence 667777 88999999999999865554
No 62
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=47.31 E-value=23 Score=22.60 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.2
Q ss_pred CcEEEE---ecCcEEecCCeEEEEEeehh
Q 042693 18 GAISFR---HYGAFLHKGNKLVTFIYEKL 43 (71)
Q Consensus 18 ga~l~v---~~G~~V~~G~~L~~l~~e~~ 43 (71)
|.+.++ +.|+.|++|++|+.+-..+.
T Consensus 36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~ 64 (131)
T 1hpc_A 36 GEVVFVELPEPGVSVTKGKGFGAVESVKA 64 (131)
T ss_dssp CSEEEEECCCTTCEECBTSEEEEEEESSC
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEecce
Confidence 666666 88999999999999865554
No 63
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=46.20 E-value=9.6 Score=28.32 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=22.4
Q ss_pred eCCCcEEEEecCcEEecCCeEEEEE
Q 042693 15 ATPGAISFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 15 ~~~ga~l~v~~G~~V~~G~~L~~l~ 39 (71)
+|+|..|.|+.||.|+.|.+|-.=|
T Consensus 208 iP~GpeLiV~eG~~v~~~qpLTnnP 232 (292)
T 1q90_A 208 IPAGPDLIVKEGQTVQADQPLTNNP 232 (292)
T ss_dssp ECSSSCBCCCTTCEECTTCBSBCCC
T ss_pred cCCCCeEEEecCCEEecCCcccCCC
Confidence 9999999999999999999986544
No 64
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=45.36 E-value=26 Score=22.29 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.4
Q ss_pred CcEEEE---ecCcEEecCCeEEEEEeehh
Q 042693 18 GAISFR---HYGAFLHKGNKLVTFIYEKL 43 (71)
Q Consensus 18 ga~l~v---~~G~~V~~G~~L~~l~~e~~ 43 (71)
|.+.++ +-|+.|++|++|+.+-..+.
T Consensus 37 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~ 65 (128)
T 3a7l_A 37 GDMVFVDLPEVGATVSAGDDCAVAESVKA 65 (128)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSC
T ss_pred CceEEEEecCCCCEEeCCCEEEEEEecce
Confidence 667777 78999999999999965554
No 65
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=43.06 E-value=9.4 Score=25.58 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=16.2
Q ss_pred EEecCcEEecCCeEEEEEe
Q 042693 22 FRHYGAFLHKGNKLVTFIY 40 (71)
Q Consensus 22 ~v~~G~~V~~G~~L~~l~~ 40 (71)
.|+.||.|++|++|++.-.
T Consensus 86 ~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 86 QVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp CCCTTCEECTTCEEEEECS
T ss_pred ccCCCCEEcCCCEEEeecC
Confidence 4889999999999998743
No 66
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=41.04 E-value=24 Score=25.33 Aligned_cols=26 Identities=12% Similarity=-0.036 Sum_probs=21.4
Q ss_pred EeCCCcEEE--EecCcEEecCCeEEEEE
Q 042693 14 QATPGAISF--RHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 14 ~~~~ga~l~--v~~G~~V~~G~~L~~l~ 39 (71)
+.+.++.++ ++.|+.|++|++|+++.
T Consensus 271 ~A~~~G~~~~~~~~g~~V~~G~~La~i~ 298 (354)
T 3cdx_A 271 MAPRTGLFEPTHYVGEEVRTGETAGWIH 298 (354)
T ss_dssp ECSSCEEEEESCCTTCEECTTSEEEEEE
T ss_pred ECCCCEEEEEeCCCCCEeCCCCEEEEEE
Confidence 377777775 46799999999999976
No 67
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=38.59 E-value=22 Score=25.47 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=17.0
Q ss_pred EEEecCcEEecCCeEEEEE
Q 042693 21 SFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~ 39 (71)
.++++|+.|++|++|+++.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~ 93 (284)
T 1qpo_A 75 DRVEDGARVPPGEALMTLE 93 (284)
T ss_dssp EECCTTCEECTTCEEEEEE
T ss_pred EEcCCCCEecCCcEEEEEE
Confidence 3789999999999999875
No 68
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=37.08 E-value=16 Score=28.83 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=18.0
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++|+.||.|++|++|+.+--.|
T Consensus 626 ~~v~~Gd~V~~g~~l~~iEamK 647 (681)
T 3n6r_A 626 VDVEVGQEVQEGQALCTIEAMK 647 (681)
T ss_dssp ECCCTTCEECTTCEEEEEECSS
T ss_pred EEeCCCCEEcCCCEEEEEEecC
Confidence 4689999999999999875433
No 69
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=35.55 E-value=12 Score=25.20 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=37.6
Q ss_pred EEeCCCcEEEEecCcEEecCCeEEEEEeehhccCCccC--chhhHhhhhhhc
Q 042693 13 VQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTR--ALSKVKQVLEIR 62 (71)
Q Consensus 13 i~~~~ga~l~v~~G~~V~~G~~L~~l~~e~~kt~DItq--GLPkVeeLfEAR 62 (71)
++++....+.+.|...+.. -.+..+.++.+++=|.-. -+|..+|+|+.=
T Consensus 42 V~lT~Dg~~Vv~HD~~l~~-~~v~~~t~~el~~l~~~~~~~iptL~evl~~~ 92 (238)
T 3no3_A 42 VHLTADNVLVVYHDNDIQG-KHIQSCTYDELKDLQLSNGEKLPTLEQYLKRA 92 (238)
T ss_dssp EEECTTSCEEECSSSEETT-EEGGGSCHHHHTTCBCTTSCBCCBHHHHHHHH
T ss_pred eeEccCCcEEEECCCCCCC-CChHhCCHHHHhhCCCCCCCcCCcHHHHHHHH
Confidence 4477777888888888874 566777888888877654 489999999974
No 70
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=34.84 E-value=8.2 Score=26.84 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=0.0
Q ss_pred EEEecCcEEecCCeEEEEEee
Q 042693 21 SFRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e 41 (71)
++++.||.|++||+|+.+--.
T Consensus 23 w~vk~Gd~V~~Gd~L~~iEtd 43 (229)
T 1zy8_K 23 WLKKEGEAVSAGDALCEIETD 43 (229)
T ss_dssp ---------------------
T ss_pred EecCCCCEeCCCCEEEEEecC
Confidence 367888888888888877533
No 71
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=34.58 E-value=17 Score=25.97 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=16.2
Q ss_pred EEEEecCcEEecCCeEEEE
Q 042693 20 ISFRHYGAFLHKGNKLVTF 38 (71)
Q Consensus 20 ~l~v~~G~~V~~G~~L~~l 38 (71)
.+.|+.||.|++|++|++.
T Consensus 231 ~i~V~~G~~V~~Gq~IG~v 249 (282)
T 2hsi_A 231 KIDVKLGQQVPRGGVLGKV 249 (282)
T ss_dssp EECSCTTCEECTTCEEEEC
T ss_pred ccccCCcCEECCCCEEEEE
Confidence 3568899999999999975
No 72
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=32.92 E-value=34 Score=21.26 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=16.1
Q ss_pred cEEEEEeCCCcEEEEecCc
Q 042693 9 QILIVQATPGAISFRHYGA 27 (71)
Q Consensus 9 qii~i~~~~ga~l~v~~G~ 27 (71)
-|++|.+|+|+.+.|-+-+
T Consensus 66 tviaIkAP~gT~LeVpdp~ 84 (106)
T 2aze_B 66 MVMVIKAPPETQLQAVDSS 84 (106)
T ss_dssp EEEEEECCTTCEEEEEECS
T ss_pred eEEEEECCCCCeeeeCCCC
Confidence 4668999999999998766
No 73
>2dzq_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-066, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.40 E-value=20 Score=22.72 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=15.4
Q ss_pred cCchhhHhhhhhhcCCccc
Q 042693 49 TRALSKVKQVLEIRSFDLI 67 (71)
Q Consensus 49 tqGLPkVeeLfEAR~~~~i 67 (71)
+-|+||.|+++++|..=++
T Consensus 60 ~ygi~~Le~IL~~~~~IsF 78 (99)
T 2dzq_A 60 CFGIAKLRKILEASNSIQF 78 (99)
T ss_dssp TSCHHHHHHHHHTTTTCEE
T ss_pred cccHHHHHHHHhccCCceE
Confidence 4588999999999987543
No 74
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=32.33 E-value=52 Score=21.39 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.8
Q ss_pred CcEEEE---ecCcEEecCCeEEEEEeehh
Q 042693 18 GAISFR---HYGAFLHKGNKLVTFIYEKL 43 (71)
Q Consensus 18 ga~l~v---~~G~~V~~G~~L~~l~~e~~ 43 (71)
|-+++| +-|+.|++|++++++-..+.
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~ 77 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKT 77 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSE
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecce
Confidence 888888 78999999999999965544
No 75
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=32.23 E-value=53 Score=21.61 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.7
Q ss_pred CcEEEE---ecCcEEecCCeEEEEEeehh
Q 042693 18 GAISFR---HYGAFLHKGNKLVTFIYEKL 43 (71)
Q Consensus 18 ga~l~v---~~G~~V~~G~~L~~l~~e~~ 43 (71)
|-+++| +-|+.|++|++++++-..+.
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka 82 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKA 82 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSC
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecce
Confidence 778888 78999999999999965544
No 76
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=32.13 E-value=19 Score=25.34 Aligned_cols=19 Identities=5% Similarity=-0.146 Sum_probs=16.2
Q ss_pred EEEecCcEEecCCeEEEEE
Q 042693 21 SFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~ 39 (71)
+.|+.|+.|++|++|+++-
T Consensus 135 i~Vk~Gd~V~~Gq~IG~vG 153 (245)
T 3tuf_B 135 VSVEQGDKVKQNQVIGKSG 153 (245)
T ss_dssp ESCCTTCEECTTCEEEECB
T ss_pred cccCCCCEECCCCEEEEeC
Confidence 4588899999999999764
No 77
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=31.79 E-value=22 Score=25.51 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=16.4
Q ss_pred EEecCcEEecCCeEEEEE
Q 042693 22 FRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 22 ~v~~G~~V~~G~~L~~l~ 39 (71)
++++|+.|++|++|+++.
T Consensus 77 ~~~dG~~v~~g~~v~~i~ 94 (286)
T 1x1o_A 77 LVAEGARVAEGTEVARVR 94 (286)
T ss_dssp SSCTTCEECTTCEEEEEE
T ss_pred EcCCCCCccCCCEEEEEE
Confidence 688999999999999875
No 78
>2hd0_A Protease NS2-3 (P23); cysteine protease, dimer, composite active site, hydrolase; HET: DMU BOG; 2.28A {Hepatitis c virus}
Probab=31.33 E-value=9.8 Score=25.24 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=15.7
Q ss_pred ehhccCCccCchhhHhhhhhhcCCccc
Q 042693 41 EKLRSCDLTRALSKVKQVLEIRSFDLI 67 (71)
Q Consensus 41 e~~kt~DItqGLPkVeeLfEAR~~~~i 67 (71)
+.+--|||+.|||-+ ||.-+.|
T Consensus 91 ~t~aCGdiv~GlPVs-----ARrG~ev 112 (128)
T 2hd0_A 91 DTAACGDIINGLPVS-----ARRGQEI 112 (128)
T ss_dssp TTCCTTCEETTEEEE-----EESSSCE
T ss_pred ceecccccccCceee-----eecCCeE
Confidence 455678999999965 5665554
No 79
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=30.57 E-value=35 Score=23.87 Aligned_cols=19 Identities=5% Similarity=-0.069 Sum_probs=17.0
Q ss_pred EEEecCcEEecCCeEEEEE
Q 042693 21 SFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~ 39 (71)
.++.+|+.|.+|++|+++.
T Consensus 62 ~~~~eG~~v~~g~~~~~v~ 80 (273)
T 2b7n_A 62 QTIKDKERFKPKDALMEIR 80 (273)
T ss_dssp EECCTTCEECTTCEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEE
Confidence 4799999999999999875
No 80
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=30.25 E-value=34 Score=24.66 Aligned_cols=27 Identities=7% Similarity=-0.132 Sum_probs=22.6
Q ss_pred eCCCcEEE-----EecCcEEecCCeEEEEEee
Q 042693 15 ATPGAISF-----RHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 15 ~~~ga~l~-----v~~G~~V~~G~~L~~l~~e 41 (71)
.+.+..+. +++|+.|++|++|+...-+
T Consensus 268 a~~~g~~~~~~~~~~~g~~V~~G~~La~i~d~ 299 (350)
T 2bco_A 268 RLHDDFDFMFDDNVENFTSFVHGEVFGHDGDK 299 (350)
T ss_dssp CCSSSEEESSCTTCCBTEECCTTCEEEEETTE
T ss_pred cCCCCeEEeccccccCCCEeCCCCEEEEECCE
Confidence 77787766 8999999999999987543
No 81
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=29.99 E-value=24 Score=25.30 Aligned_cols=19 Identities=11% Similarity=0.003 Sum_probs=16.8
Q ss_pred EEEecCcEEecCCeEEEEE
Q 042693 21 SFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~ 39 (71)
.++.+|+.|++|++|+++.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~ 93 (285)
T 1o4u_A 75 FNVEDGEYLEGTGVIGEIE 93 (285)
T ss_dssp ESCCTTCEEESCEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEE
Confidence 3688999999999999875
No 82
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=29.68 E-value=24 Score=29.78 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=18.6
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++|+.||.|++|++|+.+--.|
T Consensus 1091 ~~v~~Gd~V~~G~~l~~ieamK 1112 (1150)
T 3hbl_A 1091 VKVSVGETVKANQPLLITEAMK 1112 (1150)
T ss_dssp ECCCTTCEECTTCEEEEEESSS
T ss_pred EEeCCCCEECCCCEEEEEEecc
Confidence 4789999999999999886544
No 83
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=28.97 E-value=25 Score=25.66 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=15.5
Q ss_pred EEEecCcEEecCCeEEEE
Q 042693 21 SFRHYGAFLHKGNKLVTF 38 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l 38 (71)
+.|+.||.|++|++|++.
T Consensus 239 i~Vk~Gq~V~~GqvIG~v 256 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYS 256 (291)
T ss_dssp ECCCTTCEECTTCEEEEC
T ss_pred cccCCcCEECCCCEEEEE
Confidence 468899999999999975
No 84
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=28.97 E-value=12 Score=28.16 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred EEecCcEEecCCeEEEEEeeh
Q 042693 22 FRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 22 ~v~~G~~V~~G~~L~~l~~e~ 42 (71)
+++.||.|++||+|+.+--.|
T Consensus 23 ~v~~Gd~V~~gd~l~~vEt~K 43 (428)
T 3dva_I 23 FVKPGDEVNEDDVLCEVQNDK 43 (428)
T ss_dssp ---------------------
T ss_pred EcCCCCEECCCCEEEEEEeCC
Confidence 577888888888887664333
No 85
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=28.69 E-value=30 Score=25.39 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=17.0
Q ss_pred EEEecCcEEecCCeEEEEE
Q 042693 21 SFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~ 39 (71)
.++.+|+.|++|++|+++.
T Consensus 88 ~~~~dG~~v~~g~~v~~i~ 106 (300)
T 3l0g_A 88 IHKKDGDITGKNSTLVSGE 106 (300)
T ss_dssp ECCCTTCEECSSCEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEE
Confidence 4789999999999999875
No 86
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=28.53 E-value=32 Score=24.70 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=19.4
Q ss_pred CCCcEE--EEecCcEEecCCeEEEEE
Q 042693 16 TPGAIS--FRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 16 ~~ga~l--~v~~G~~V~~G~~L~~l~ 39 (71)
-++..+ ++.+|+.|.+|++|+++.
T Consensus 82 ~~~~~v~~~~~dG~~v~~g~~~~~v~ 107 (296)
T 1qap_A 82 GDDVRLTWHVDDGDAIHANQTVFELQ 107 (296)
T ss_dssp TTSSEEEESCCTTCEECTTCEEEEEE
T ss_pred CCCeEEEEEcCCCCEecCCCEEEEEE
Confidence 345455 689999999999999875
No 87
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=27.96 E-value=27 Score=25.31 Aligned_cols=20 Identities=0% Similarity=-0.062 Sum_probs=17.6
Q ss_pred EEEEecCcEEecCCeEEEEE
Q 042693 20 ISFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 20 ~l~v~~G~~V~~G~~L~~l~ 39 (71)
..++.+|+.|++|++|+++.
T Consensus 78 ~~~~~dG~~v~~g~~v~~i~ 97 (287)
T 3tqv_A 78 TWLYSDAQKVPANARIFELK 97 (287)
T ss_dssp EESSCTTCEECTTCEEEEEE
T ss_pred EEEeCCCCEeeCCCEEEEEE
Confidence 45789999999999999875
No 88
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=27.93 E-value=19 Score=25.94 Aligned_cols=17 Identities=24% Similarity=0.133 Sum_probs=14.8
Q ss_pred EEecCcEEecCCeEEEE
Q 042693 22 FRHYGAFLHKGNKLVTF 38 (71)
Q Consensus 22 ~v~~G~~V~~G~~L~~l 38 (71)
.|+.||.|++|++|++.
T Consensus 252 ~V~~G~~V~~Gq~Ig~~ 268 (334)
T 3csq_A 252 PFDVGKKLKKGDLMGHT 268 (334)
T ss_dssp CCCTTCEECTTSEEEEC
T ss_pred cCCCcCEECCCCEEEee
Confidence 48899999999999863
No 89
>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.93 E-value=25 Score=21.87 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=14.4
Q ss_pred cCchhhHhhhhhhcCCcc
Q 042693 49 TRALSKVKQVLEIRSFDL 66 (71)
Q Consensus 49 tqGLPkVeeLfEAR~~~~ 66 (71)
+-|+++.|++|+||..=+
T Consensus 60 ~y~I~~Le~IL~~~~~I~ 77 (89)
T 2dn5_A 60 TYDIHRLEKILKAREHVR 77 (89)
T ss_dssp SCCHHHHHHHHTTTTTCE
T ss_pred cccHHHHHHHHhhccCce
Confidence 357789999999998743
No 90
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=27.56 E-value=85 Score=24.65 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=19.0
Q ss_pred eCCCcEE---EEecCcEEecCCeEEEE
Q 042693 15 ATPGAIS---FRHYGAFLHKGNKLVTF 38 (71)
Q Consensus 15 ~~~ga~l---~v~~G~~V~~G~~L~~l 38 (71)
.|..+++ +++.|+.|..|++|+++
T Consensus 654 ap~~G~v~~i~~~~G~~v~~g~~l~~i 680 (681)
T 3n6r_A 654 AEKKGVVAKINASAGNSLAVDDVIMEF 680 (681)
T ss_dssp CSSSEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCCCeEEEEEEeCCcCEeCCCCEEEEE
Confidence 5555544 57899999999999986
No 91
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=27.30 E-value=15 Score=24.34 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=35.3
Q ss_pred EEeCCCcEEEEecCcEEecCCeEEEEEeehhccCCccCchhhHhhhhhhcC
Q 042693 13 VQATPGAISFRHYGAFLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEIRS 63 (71)
Q Consensus 13 i~~~~ga~l~v~~G~~V~~G~~L~~l~~e~~kt~DItqGLPkVeeLfEAR~ 63 (71)
++++....+.+.|.+.+..| .+..+.++.++.=| +-+|..+|+|+.=+
T Consensus 43 V~lT~Dg~lVv~HD~~l~~g-~v~~~t~~eL~~l~--~~iptL~evl~~~~ 90 (224)
T 1vd6_A 43 VWPTRDGVFAVRHDPDTPLG-PVFQVDYADLKAQE--PDLPRLEEVLALKE 90 (224)
T ss_dssp EEECTTSCEEECSCSEETTE-EGGGSCHHHHHHHS--TTCCBHHHHHGGGG
T ss_pred eeEecCCcEEEECCCccCCC-ChhhCCHHHHHhcC--CCCCCHHHHHHhhh
Confidence 44777777878887777733 35666777777666 78999999999643
No 92
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=26.89 E-value=27 Score=24.69 Aligned_cols=26 Identities=8% Similarity=-0.092 Sum_probs=19.7
Q ss_pred eCCCcEEE--EecCcEEecCCeEEEEEe
Q 042693 15 ATPGAISF--RHYGAFLHKGNKLVTFIY 40 (71)
Q Consensus 15 ~~~ga~l~--v~~G~~V~~G~~L~~l~~ 40 (71)
.+.+..+. ++.|+.|++|++|+++.-
T Consensus 262 a~~~G~~~~~~~~g~~V~~G~~la~i~d 289 (332)
T 2qj8_A 262 SPSPGIFEPRCSVMDEVEQGDVVGVLHP 289 (332)
T ss_dssp CSSSEEEEECSCTTCEECTTCEEEEEEC
T ss_pred CCCCeEEEEeCCCCCEeCCCCEEEEEEC
Confidence 55555553 567999999999999853
No 93
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=26.66 E-value=28 Score=24.45 Aligned_cols=19 Identities=16% Similarity=-0.059 Sum_probs=16.3
Q ss_pred EEecCcEEecCCeEEEEEe
Q 042693 22 FRHYGAFLHKGNKLVTFIY 40 (71)
Q Consensus 22 ~v~~G~~V~~G~~L~~l~~ 40 (71)
.|+.||.|++|++|++.=.
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp SCCTTCEECTTCEEEECBC
T ss_pred cCCCCCEECCCCEEEEECC
Confidence 5789999999999998743
No 94
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=26.61 E-value=30 Score=24.99 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=15.7
Q ss_pred EEEecCcEEecCCeEEEE
Q 042693 21 SFRHYGAFLHKGNKLVTF 38 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l 38 (71)
+.|+.||.|++|++|++.
T Consensus 284 ~~v~~G~~V~~G~~Ig~~ 301 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALA 301 (361)
T ss_dssp ECCCTTCEECTTCEEEEC
T ss_pred cccCCcCEECCCCEEEEE
Confidence 568899999999999974
No 95
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=26.55 E-value=58 Score=24.14 Aligned_cols=27 Identities=15% Similarity=0.463 Sum_probs=17.0
Q ss_pred EEecCCeEEEEEeehhccCCccCchhhHhhhhhh
Q 042693 28 FLHKGNKLVTFIYEKLRSCDLTRALSKVKQVLEI 61 (71)
Q Consensus 28 ~V~~G~~L~~l~~e~~kt~DItqGLPkVeeLfEA 61 (71)
.+++||.|+-+.-.+ .-+++||+||.-
T Consensus 430 ~i~~gD~vivf~~~~-------~~i~~ve~lF~~ 456 (461)
T 4g65_A 430 VIEQDDHVVMFLVDK-------KYVPDVEALFQP 456 (461)
T ss_dssp BCCTTCEEEEEESCG-------GGHHHHHHHHCC
T ss_pred EECCCCEEEEEEcCH-------HHHHHHHHHcCC
Confidence 466666655443221 258999999974
No 96
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=26.51 E-value=35 Score=23.41 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.2
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
+.+..|+.|.+||.||.+...+
T Consensus 114 ~i~~~G~rV~kgd~lA~i~T~K 135 (169)
T 3d4r_A 114 PIMDFGFRVLKGYRLATLESKK 135 (169)
T ss_dssp ECCCCSEEECTTCEEEEEECTT
T ss_pred EEcCcCcEeccCCeEEEEEecC
Confidence 3578999999999999887544
No 97
>1ce3_A Protein (API); protease inhibitor, circular permutation; NMR {Nicotiana alata} SCOP: g.69.1.1
Probab=26.20 E-value=47 Score=18.89 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=17.5
Q ss_pred eCCCcEEEEecCcEEecCCe
Q 042693 15 ATPGAISFRHYGAFLHKGNK 34 (71)
Q Consensus 15 ~~~ga~l~v~~G~~V~~G~~ 34 (71)
.+.|..+|-.+|.+|=+|+.
T Consensus 35 g~KGC~y~s~dGtfiCeGes 54 (54)
T 1ce3_A 35 GTKGCKYFSDDGTFVCEGES 54 (54)
T ss_dssp SCTTCEEECSSSCEEECCCC
T ss_pred ccccceEEcCCCcEEeCccC
Confidence 56799999999999999863
No 98
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=25.16 E-value=74 Score=27.18 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=15.8
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++|+.||.|++||+|+.+--.|
T Consensus 1181 ~~v~~Gd~V~~g~~l~~iEamK 1202 (1236)
T 3va7_A 1181 PVAAVGDHVEAGDGVIIIEAMK 1202 (1236)
T ss_dssp ESSCTTCEECSSCEEEEEEETT
T ss_pred EEcCCCCEECCCCEEEEEEecC
Confidence 4578888888888888765443
No 99
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=24.83 E-value=41 Score=20.33 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=13.4
Q ss_pred EecCcEEecCCeEEEEE
Q 042693 23 RHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 23 v~~G~~V~~G~~L~~l~ 39 (71)
.-+|++|.+|++|++--
T Consensus 16 ~~~Gq~V~aG~IivRQR 32 (76)
T 3r8s_W 16 RFGGESVLAGSIIVRQR 32 (76)
T ss_dssp SCTTCEECTTCEEEECS
T ss_pred ecCCeEEecCcEEEecc
Confidence 45789999999998643
No 100
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=24.16 E-value=77 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=20.0
Q ss_pred eCCCcE---EEEecCcEEecCCeEEEEE
Q 042693 15 ATPGAI---SFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 15 ~~~ga~---l~v~~G~~V~~G~~L~~l~ 39 (71)
+|..++ ++++.|+.|..|++|+.+-
T Consensus 1119 ap~~G~v~~i~v~~G~~V~~g~~l~~i~ 1146 (1150)
T 3hbl_A 1119 APFDGVIKQVTVNNGDTIATGDLLIEIE 1146 (1150)
T ss_dssp CSSSEEEEEECCCTTCEECTTBEEEEEC
T ss_pred cCCCeEEEEEEeCCCCEeCCCCEEEEEe
Confidence 555444 5799999999999999884
No 101
>3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Probab=23.43 E-value=15 Score=26.82 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=17.2
Q ss_pred CCccCchhhHhhhhhhcCC
Q 042693 46 CDLTRALSKVKQVLEIRSF 64 (71)
Q Consensus 46 ~DItqGLPkVeeLfEAR~~ 64 (71)
-|+++.+||-++|.+||..
T Consensus 20 tt~vGSfprp~~l~~ar~~ 38 (357)
T 3rpd_A 20 TSTAGSLPKPLWLAEPETL 38 (357)
T ss_dssp CCCSSCCCCCTTTBCTTCS
T ss_pred cceeccCCCCHHHHHHHHH
Confidence 5889999999999999975
No 102
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=23.33 E-value=23 Score=28.62 Aligned_cols=22 Identities=27% Similarity=0.131 Sum_probs=18.2
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
+.|+.||.|++|++|+.+--.+
T Consensus 663 v~V~~Gd~V~~Gq~L~~iEamK 684 (718)
T 3bg3_A 663 IKVVAGAKVAKGQPLCVLSAMK 684 (718)
T ss_dssp ECSCTTCCBCTTCCCEEEESSS
T ss_pred EEeCCCCeeCCCCEEEEEeccc
Confidence 4688999999999999986433
No 103
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=23.23 E-value=13 Score=27.61 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=22.3
Q ss_pred eCCCcEEEEecCcEEecCCeEEEEE
Q 042693 15 ATPGAISFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 15 ~~~ga~l~v~~G~~V~~G~~L~~l~ 39 (71)
+|+|..|.|+.||.|+.|.+|-.=|
T Consensus 211 iP~GpeLiV~eG~~v~~~qpLTnnP 235 (289)
T 1vf5_C 211 IPAGPELIVSEGQAVKAGEALTNNP 235 (289)
T ss_dssp CCSSSCCCCCTTCCCTTSCCCSCCC
T ss_pred cCCCCeEEEecCCEEecCCccccCC
Confidence 9999999999999999999986544
No 104
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.98 E-value=71 Score=19.61 Aligned_cols=28 Identities=11% Similarity=-0.057 Sum_probs=21.1
Q ss_pred CCCCCCcEEEEEeCCC--cEEEEecCcEEe
Q 042693 3 THLKSDQILIVQATPG--AISFRHYGAFLH 30 (71)
Q Consensus 3 ~~~~sGqii~i~~~~g--a~l~v~~G~~V~ 30 (71)
..++|+-++.+|+|.+ +.++|..|..++
T Consensus 2 ~~~k~~~~irvhLPn~QrT~V~VrpG~tlr 31 (86)
T 1wxm_A 2 SSGSSGGTVKVYLPNKQRTVVTVRDGMSVY 31 (86)
T ss_dssp CCCCCSSEEEEECSSSCEEEEECCSSCBSH
T ss_pred CcccccceEEEECCCCCeEEEEecCCcCHH
Confidence 3567888899998864 778888887653
No 105
>1q60_A General transcription factor II-I; TFII-I, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.288.1.1
Probab=22.66 E-value=38 Score=21.42 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=15.0
Q ss_pred cCchhhHhhhhhhcCCccc
Q 042693 49 TRALSKVKQVLEIRSFDLI 67 (71)
Q Consensus 49 tqGLPkVeeLfEAR~~~~i 67 (71)
+-|+++.|++|++|..=++
T Consensus 60 ~ygi~~Le~IL~~~~~IsF 78 (99)
T 1q60_A 60 TFGIPRLEKILRNKAKIKF 78 (99)
T ss_dssp TSCHHHHHHHHHTTTTCEE
T ss_pred cccHHHHHHHHhcCcCceE
Confidence 3578899999999987443
No 106
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=22.62 E-value=99 Score=20.61 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.1
Q ss_pred CcEEEE---ecCcEEecCCeEEEEEeehh
Q 042693 18 GAISFR---HYGAFLHKGNKLVTFIYEKL 43 (71)
Q Consensus 18 ga~l~v---~~G~~V~~G~~L~~l~~e~~ 43 (71)
|-+++| +-|+.|++|++++++-..|.
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa 87 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKS 87 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecce
Confidence 777777 67999999999999965554
No 107
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=22.12 E-value=19 Score=28.34 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=0.0
Q ss_pred EEEecCcEEecCCeEEEEEeeh
Q 042693 21 SFRHYGAFLHKGNKLVTFIYEK 42 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~~e~ 42 (71)
++|+.||.|++|++|+.+--.|
T Consensus 616 ~~v~~Gd~V~~g~~l~~iEamK 637 (675)
T 3u9t_A 616 VLVEPGQTVEAGATLVVLEAMK 637 (675)
T ss_dssp ----------------------
T ss_pred EEeCCCCEEcCCCEEEEEEecc
Confidence 4799999999999999875433
No 108
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.66 E-value=41 Score=21.35 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=13.3
Q ss_pred CchhhHhhhhhhcCCcc
Q 042693 50 RALSKVKQVLEIRSFDL 66 (71)
Q Consensus 50 qGLPkVeeLfEAR~~~~ 66 (71)
-|+++.|.+||||..=+
T Consensus 61 ygi~~Le~IL~~~~~I~ 77 (99)
T 2dzr_A 61 FGSQNLERILAVADKIK 77 (99)
T ss_dssp SCHHHHHHHHHHTTTCE
T ss_pred ccHHHHHHHHHhccCcE
Confidence 46678999999997643
No 109
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=21.33 E-value=43 Score=24.36 Aligned_cols=20 Identities=5% Similarity=-0.066 Sum_probs=17.6
Q ss_pred EEEEecCcEEecCCeEEEEE
Q 042693 20 ISFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 20 ~l~v~~G~~V~~G~~L~~l~ 39 (71)
..++.+|+.|.+|++|+++.
T Consensus 89 ~~~~~dG~~v~~g~~l~~v~ 108 (298)
T 3gnn_A 89 DWRHREGDRMSADSTVCELR 108 (298)
T ss_dssp EESSCTTCEECTTCEEEEEE
T ss_pred EEEcCCCCEecCCCEEEEEE
Confidence 35789999999999999875
No 110
>4av5_A FIMH; cell adhesion, bacterial adhesin type 1 fimbriae, urinary TR infection, variable immunoglobulin fold; HET: FYZ; 1.40A {Escherichia coli} PDB: 2vco_A* 1uwf_A* 4auy_A* 4av0_A* 4auu_A* 4avh_A* 4avi_A* 4avj_A* 4avk_A* 1tr7_B* 4av4_A*
Probab=21.17 E-value=50 Score=22.33 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=17.2
Q ss_pred CcEEecCCeEEEEEeehhccCCccCc
Q 042693 26 GAFLHKGNKLVTFIYEKLRSCDLTRA 51 (71)
Q Consensus 26 G~~V~~G~~L~~l~~e~~kt~DItqG 51 (71)
|-.|++||.||+|..-+. .+.-+|
T Consensus 117 Gv~I~~G~~iAtl~~~q~--~~~~~~ 140 (158)
T 4av5_A 117 GVAIKAGSLIAVLILRQT--NNYNSD 140 (158)
T ss_dssp EEEECTTCEEEEEEEEEE--ESSSCC
T ss_pred cEEEeCCCEEEEEEEEEE--ccCCCC
Confidence 557999999999977643 344444
No 111
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=21.15 E-value=44 Score=24.62 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=17.0
Q ss_pred EEEecCcEEecCCeEEEEE
Q 042693 21 SFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~ 39 (71)
.++.+|+.|.+|++|+++.
T Consensus 112 ~~~~dG~~v~~g~~l~~v~ 130 (320)
T 3paj_A 112 WHVQDGDTLTPNQTLCTLT 130 (320)
T ss_dssp ESSCTTCEECTTCEEEEEE
T ss_pred EEeCCCCEecCCCEEEEEE
Confidence 4789999999999999875
No 112
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=20.98 E-value=53 Score=20.25 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=13.6
Q ss_pred EecCcEEecCCeEEEEE
Q 042693 23 RHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 23 v~~G~~V~~G~~L~~l~ 39 (71)
..+|++|.+|++|++--
T Consensus 25 ~~~Gq~V~aG~IivRQR 41 (85)
T 3v2d_0 25 RYEGQVVRAGNILVRQR 41 (85)
T ss_dssp SCTTCEECTTCEEEECS
T ss_pred ecCCeEEcCCeEEEecC
Confidence 45799999999998643
No 113
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=20.73 E-value=1.2e+02 Score=17.81 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=25.2
Q ss_pred CCcEEEEE---e-CCCcEEEEecCcEEecCCeEEEEEee
Q 042693 7 SDQILIVQ---A-TPGAISFRHYGAFLHKGNKLVTFIYE 41 (71)
Q Consensus 7 sGqii~i~---~-~~ga~l~v~~G~~V~~G~~L~~l~~e 41 (71)
.||+..+. + .+|-+|.-+-...|..||+|.-+-.|
T Consensus 22 ~G~~tQVrv~~l~d~~r~i~RnVkGPVR~GDIl~L~EtE 60 (67)
T 3u5c_c 22 RGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESE 60 (67)
T ss_dssp SCCEEEEEEEESSSCSCEEEEECSSCCCTTCEEEESSSS
T ss_pred cccEEEEEEEEecCCCcEEEecccCCcccCCEEEEehhh
Confidence 45666655 2 35778888888899999998766544
No 114
>2ed2_A General transcription factor II-I; unknown function, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.37 E-value=45 Score=21.04 Aligned_cols=18 Identities=0% Similarity=0.134 Sum_probs=14.5
Q ss_pred cCchhhHhhhhhhcCCcc
Q 042693 49 TRALSKVKQVLEIRSFDL 66 (71)
Q Consensus 49 tqGLPkVeeLfEAR~~~~ 66 (71)
+-|+|+.|+++++|..=+
T Consensus 60 ~ygi~~Le~IL~~~~~Is 77 (99)
T 2ed2_A 60 WYGIPRLEKIIQVGNRIK 77 (99)
T ss_dssp TSCHHHHHHHHHTTTTCE
T ss_pred cccHHHHHHHHhcccCce
Confidence 357889999999998643
No 115
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=20.32 E-value=26 Score=21.29 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=6.4
Q ss_pred CCccCchhh
Q 042693 46 CDLTRALSK 54 (71)
Q Consensus 46 ~DItqGLPk 54 (71)
-||.|| ||
T Consensus 5 tdI~QG-Pk 12 (77)
T 3g21_A 5 ADIMQG-PS 12 (77)
T ss_dssp GGCCCC-TT
T ss_pred cccccC-CC
Confidence 489999 66
No 116
>2dn4_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.30 E-value=44 Score=21.11 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=14.8
Q ss_pred cCchhhHhhhhhhcCCccc
Q 042693 49 TRALSKVKQVLEIRSFDLI 67 (71)
Q Consensus 49 tqGLPkVeeLfEAR~~~~i 67 (71)
+-|+++.|++|+||..=++
T Consensus 60 ~ygi~~Le~IL~~~~~IsF 78 (99)
T 2dn4_A 60 TYGIPRLERILLAKERIRF 78 (99)
T ss_dssp TSCHHHHHHHHHSTTTCEE
T ss_pred cccHHHHHHHHhcccCceE
Confidence 3577899999999987443
No 117
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=20.12 E-value=30 Score=23.22 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=34.7
Q ss_pred EEeCCCcEEEEecCcEEec-------C----------CeEEEEEeehhccCCccC--------------chhhHhhhhhh
Q 042693 13 VQATPGAISFRHYGAFLHK-------G----------NKLVTFIYEKLRSCDLTR--------------ALSKVKQVLEI 61 (71)
Q Consensus 13 i~~~~ga~l~v~~G~~V~~-------G----------~~L~~l~~e~~kt~DItq--------------GLPkVeeLfEA 61 (71)
++++....+.+.|.+.+.. | -.+..+.++.+++=|+-. -+|..+|+|+.
T Consensus 44 V~lTkDg~lVv~HD~~l~r~~~~tt~g~~~~~~~~~~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~iptL~evl~~ 123 (272)
T 3ch0_A 44 LVISKDNRVVVSHDTFFHHEITMMVDGEDVTEANEKNFNLYAMNYADIKEIDVGMKTHPRFKSQKKVPAVKPLFRELIET 123 (272)
T ss_dssp EEECTTCCEEECSSSBCCTTTCCEETTEECCTTTGGGSBGGGSCHHHHTTSCCSSSCCTTCTTSCCCCCCCCBHHHHHHH
T ss_pred eeEcCCCcEEEeCCCcccccccccCCCcccccccccCceeecCCHHHHHhcCCCCccCccCcccccCCCCCcCHHHHHHH
Confidence 4477777777777777654 2 246677788887777643 59999999996
No 118
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=20.11 E-value=42 Score=23.94 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=16.7
Q ss_pred EEEecCcEEecCCeEEEEE
Q 042693 21 SFRHYGAFLHKGNKLVTFI 39 (71)
Q Consensus 21 l~v~~G~~V~~G~~L~~l~ 39 (71)
.++.+|+.|.+|++|+++.
T Consensus 75 ~~~~dG~~v~~g~~l~~v~ 93 (299)
T 2jbm_A 75 WFLPEGSKLVPVARVAEVR 93 (299)
T ss_dssp ESSCTTCEECSSEEEEEEE
T ss_pred EEcCCCCCCCCCCEEEEEE
Confidence 3688999999999999875
Done!