BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042694
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
Query: 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFII-----NAELFKCLKQTYG-------KS 158
+ +TGATGFL + L+ ++LR + G++ + + + + L++T+ +
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRH 133
Query: 159 YQAFMLSKLVPAVGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTR 218
++ +L G+ E +LGL++ +A+ VD+IV+SAA +++ N
Sbjct: 134 FKELAADRLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVNAFPYHEL-FGPNVA 192
Query: 219 GPCRLMEFAKQCNKLKLFVQVSTAYV 244
G L+ A KLK F VSTA V
Sbjct: 193 GTAELIRIA-LTTKLKPFTYVSTADV 217
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 184 DLADVIA-------KEVDVIVNSAANTTFD---ERYDIAIDINTRGPCRLMEFAKQCNKL 233
D+ +V+A K+ +V++N AA+T D E+YD+A IN GP L A
Sbjct: 48 DITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG-- 105
Query: 234 KLFVQVSTAYV-NGQRRGKVME 254
VQ+ST YV +G+ + + E
Sbjct: 106 AEIVQISTDYVFDGEAKEPITE 127
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 111 KNFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAELFKCLKQTYGKSYQAFMLSKLVPA 170
KN VTG GF+ + + PDV + +++ + K + +A + ++
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLDKLTYAGNKA----NLEAILGDRVELV 59
Query: 171 VGNVCENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIA---IDINTRGPCRLMEFA 227
VG++ + +L D +A + D IV+ AA + D + I N G L+E A
Sbjct: 60 VGDIA------DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAA 113
Query: 228 KQCNKLKLFVQVSTAYVNG 246
++ + F VST V G
Sbjct: 114 RKYD--IRFHHVSTDEVYG 130
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 112 NFFVTGATGFLAKVLIEKILRTVPDVGKIFIINAE------LFKCLKQTYGKSYQAFMLS 165
N +TGATGFL LIE + + + E L L + + MLS
Sbjct: 152 NTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLS 211
Query: 166 KLVPAVGNV-CENNLGLEEDLADVIAKEVDVIVNSAANTTFDERYDIAIDINTRGPCRLM 224
+ VG+ C +++ L E++ D I+++ A T D +N +G ++
Sbjct: 212 NIEVIVGDFECMDDVVLPENM--------DTIIHAGARTDHFGDDDEFEKVNVQGTVDVI 263
Query: 225 EFAKQCNKLKLFV 237
A+Q + ++V
Sbjct: 264 RLAQQHHARLIYV 276
>pdb|3LZL|A Chain A, Crystal Structure Analysis Of The As-Solated P19 Protein
From Campylobacter Jejuni At 1.45 A At Ph 9.0
pdb|3LZL|B Chain B, Crystal Structure Analysis Of The As-Solated P19 Protein
From Campylobacter Jejuni At 1.45 A At Ph 9.0
pdb|3LZN|A Chain A, Crystal Structure Analysis Of The Apo P19 Protein From
Campylobacter Jejuni At 1.59 A At Ph 9
pdb|3LZN|B Chain B, Crystal Structure Analysis Of The Apo P19 Protein From
Campylobacter Jejuni At 1.59 A At Ph 9
pdb|3LZO|A Chain A, Crystal Structure Analysis Of The Copper-Reconstituted P19
Protein From Campylobacter Jejuni At 1.65 A At Ph 10.0
pdb|3LZO|B Chain B, Crystal Structure Analysis Of The Copper-Reconstituted P19
Protein From Campylobacter Jejuni At 1.65 A At Ph 10.0
pdb|3LZP|A Chain A, Crystal Structure Analysis Of The 'as-Isolated' P19
Protein From Campylobacter Jejuni At 1.65 A At Ph 9.0
pdb|3LZP|B Chain B, Crystal Structure Analysis Of The 'as-Isolated' P19
Protein From Campylobacter Jejuni At 1.65 A At Ph 9.0
pdb|3LZQ|A Chain A, Crystal Structure Analysis Of Manganese Treated P19
Protein From Campylobacter Jejuni At 1.41 A At Ph 9
pdb|3LZQ|B Chain B, Crystal Structure Analysis Of Manganese Treated P19
Protein From Campylobacter Jejuni At 1.41 A At Ph 9
pdb|3LZR|A Chain A, Crystal Structure Analysis Of Manganese Treated P19
Protein From Campylobacter Jejuni At 2.73 A At Ph 9 And
Manganese Peak Wavelength (1.893 A)
pdb|3LZR|B Chain B, Crystal Structure Analysis Of Manganese Treated P19
Protein From Campylobacter Jejuni At 2.73 A At Ph 9 And
Manganese Peak Wavelength (1.893 A)
Length = 159
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 513 MSEEEKRKFGFDVGSIDWKEYITNVHIPGLRRHVMKGRGI 552
++ E+ +K GF VG+ + YI+N G RHV + G+
Sbjct: 100 IAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGV 139
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 350 GKGQLTGFLVDPNGILDVVPADMVVNATLAAIAQHGMIQKPDINVYQIASSVVNPLVFQD 409
G G + V P+ LDV A+ V T A +A GM +P + +Y V D
Sbjct: 352 GSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGM--RPVVAIYSTFLQRAYDQVLHD 409
Query: 410 LARLLHEHYSASPCVDTKG 428
+A EH + + C+D G
Sbjct: 410 VAI---EHLNVTFCIDRAG 425
>pdb|2GGS|A Chain A, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
pdb|2GGS|B Chain B, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
Length = 273
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 168 VPAVGNVCENNLGLEEDLAD-------VIAKEVDVIVNSAANTTFDE---RYDIAIDINT 217
V V N E G + DL D +I K DVI+N+AA T D+ + A IN
Sbjct: 26 VIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINA 85
Query: 218 RGPCRLMEFAKQCNKLKLFVQVSTAYVNGQRRGKVMEK 255
++ K + V +ST YV +G E+
Sbjct: 86 EAVRHIVRAGKVID--SYIVHISTDYVFDGEKGNYKEE 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,069,836
Number of Sequences: 62578
Number of extensions: 674232
Number of successful extensions: 1512
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1510
Number of HSP's gapped (non-prelim): 8
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)