BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042697
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 320 LISVFEVFLPRLHLYPNISSLLNREVAGVITQ 351
L++VFEVFLP+L YPN S LN + A ++ +
Sbjct: 98 LVNVFEVFLPQLLTYPNPSDPLNSDAASLLMK 129
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 319 DLISVFEVFLPRLHLYPNISSLLNREVAGV 348
DL ++FE FLP+L YPN LN + A +
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAM 148
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 104 VHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIE----KQNHSLDKLPTSSICH 156
V + S L +K SL + N P +NS V + +E +N ++DK+P ++ H
Sbjct: 130 VADTDGSHLPPLKESLLEKNKPYKQNSGKVVGSYFVEAGVYGRNFTVDKIPAQNLTH 186
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 320 LISVFEVFLPRLHLYPNISSLLNREVAGVI 349
L ++F+VFLP+L YPN S LN + A ++
Sbjct: 107 LENIFDVFLPQLLRYPNPSDPLNVQAAHLL 136
>pdb|1IGT|B Chain B, Structure Of Immunoglobulin
pdb|1IGT|D Chain D, Structure Of Immunoglobulin
Length = 444
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 21/169 (12%)
Query: 1 MSWLINSIEVSIGKTHLFLPTAKDVWDAVRETYSDLKNSSQ-ILELKTRLCK-----LGK 54
+SW +N++EV +T T ++ +++ S L Q + K CK L
Sbjct: 276 ISWFVNNVEVHTAQTQ----THREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA 331
Query: 55 VIVQFLSRPKRSVRRNPAANVDSITVHSTPKFEISKRSLKKALSQLADPVHENPQSELEK 114
I + +S+PK SVR + V P+ E++K+ + + D + E+ E
Sbjct: 332 PIERTISKPKGSVR------APQVYVLPPPEEEMTKKQVTLTC-MVTDFMPEDIYVEWTN 384
Query: 115 VKRSLRKVNN--PLVE--NSAFVQSEFEIEKQNHSLDKLPTSSICHEGL 159
++ N P+++ S F+ S+ +EK+N + S+ HEGL
Sbjct: 385 NGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL 433
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 104 VHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIE----KQNHSLDKLPTSSICH 156
V + S L +K L + N P +NS V + +E +N ++DK+P ++ H
Sbjct: 107 VADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTH 163
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 104 VHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIE----KQNHSLDKLPTSSICH 156
V + S L +K L + N P +NS V + +E +N ++DK+P ++ H
Sbjct: 107 VADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTH 163
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 104 VHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIE----KQNHSLDKLPTSSICH 156
V + S L +K L + N P +NS V + +E +N ++DK+P ++ H
Sbjct: 107 VADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTH 163
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 104 VHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIE----KQNHSLDKLPTSSICH 156
V + S L +K L + N P +NS V + +E +N ++DK+P ++ H
Sbjct: 107 VADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTH 163
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 104 VHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIE----KQNHSLDKLPTSSICH 156
V + S L +K L + N P +NS V + +E +N ++DK+P ++ H
Sbjct: 107 VADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTH 163
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 104 VHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIE----KQNHSLDKLPTSSICH 156
V + S L +K L + N P +NS V + +E +N ++DK+P ++ H
Sbjct: 107 VADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTH 163
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 104 VHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIE----KQNHSLDKLPTSSICH 156
V + S L +K L + N P +NS V + +E +N ++DK+P ++ H
Sbjct: 107 VADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTH 163
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 104 VHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIE----KQNHSLDKLPTSSICH 156
V + S L +K L + N P +NS V + +E +N ++DK+P ++ H
Sbjct: 107 VADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTH 163
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 104 VHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIE----KQNHSLDKLPTSSICH 156
V + S L +K L + N P +NS V + +E +N ++DK+P ++ H
Sbjct: 107 VADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTH 163
>pdb|2REO|A Chain A, Crystal Structure Of Human Sulfotransferase 1c3 (Sult1c3)
In Complex With Pap
Length = 305
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 89 SKRSLKKALSQLADPVHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIEKQN--HSL 146
+ + + + L + + ++P+ E+EK+ + L K + + N + F++ KQN +
Sbjct: 191 AAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISEEILNKIIYHTSFDVMKQNPMTNY 250
Query: 147 DKLPTSSICH 156
LPTS + H
Sbjct: 251 TTLPTSIMDH 260
>pdb|2H8K|A Chain A, Human Sulfotranferase Sult1c3 In Complex With Pap
pdb|2H8K|B Chain B, Human Sulfotranferase Sult1c3 In Complex With Pap
Length = 306
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 89 SKRSLKKALSQLADPVHENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIEKQN--HSL 146
+ + + + L + + ++P+ E+EK+ + L K + + N + F++ KQN +
Sbjct: 192 AAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISEEILNKIIYHTSFDVMKQNPMTNY 251
Query: 147 DKLPTSSICH 156
LPTS + H
Sbjct: 252 TTLPTSIMDH 261
>pdb|2Z5F|A Chain A, Human Sulfotransferase Sult1b1 In Complex With Pap
pdb|2Z5F|B Chain B, Human Sulfotransferase Sult1b1 In Complex With Pap
Length = 298
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 106 ENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIEKQNHSLD--KLPTSSICH 156
ENP+ E++K+ R L K N + + + FE+ K N ++ LPT+ + H
Sbjct: 201 ENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVNYTHLPTTVMDH 253
>pdb|3CKL|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult1b1 In Complex With Pap And Resveratrol
pdb|3CKL|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult1b1 In Complex With Pap And Resveratrol
Length = 298
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 106 ENPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIEKQNHSLD--KLPTSSICH 156
ENP+ E++K+ R L K N + + + FE+ K N ++ LPT+ + H
Sbjct: 201 ENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVNYTHLPTTVMDH 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,571,934
Number of Sequences: 62578
Number of extensions: 350780
Number of successful extensions: 620
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 22
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)