BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042697
(367 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
Length = 587
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 142/263 (53%), Gaps = 42/263 (15%)
Query: 61 SRPKRSVRRNPAANVDSITVHSTPKFEISKRSLKKALSQ-LADPVHENPQSELEKVKRSL 119
++PK+SVR+ PA+N +S +V ++ +FE KRS +K SQ + P E+PQ ELEKVKRSL
Sbjct: 280 AKPKKSVRKVPASNFESSSVQTSFEFEKPKRSFRKVSSQSIEPPAVEDPQIELEKVKRSL 339
Query: 120 RKVNNPLVENSAFVQ--SEFEIEKQNHSLDKLPTSS--ICHEGLEWSLRYLGEKMKKKTT 175
RKV+NP+VE+S Q E+EK ++K SS + HE E + EK KK
Sbjct: 340 RKVHNPVVESSIQPQRSPRKEVEKPKLGVEKTRESSYPLVHETAEEPVNVCDEK--KKQE 397
Query: 176 LKQSKLPKVEAM------PNLVEMNEMSDSG----------------------AKDKTIP 207
+ + +V A+ P +E NE DS K++ P
Sbjct: 398 ISEQPEEEVHALEMEVHTPGPLETNEALDSSLVNQIDSNEKAMVEEKPSMEKDTKEEKTP 457
Query: 208 MTNGNFEPKEDSTNNENNKSSRKVDVLTKKECVE--NELQSSPSLPSYIAATESAKAKLR 265
N KE+S EN KS +K +K E E ++SPS+PSY+ AT+SAKAKLR
Sbjct: 458 KPNN----KENSAGKENQKSRKKGSATSKTEREESNGHHETSPSIPSYMQATKSAKAKLR 513
Query: 266 LQGSSRSSE-DGAEKNSGTGRHS 287
LQGS +S+E DG EK + RHS
Sbjct: 514 LQGSPKSAEQDGTEKATVPRRHS 536
>sp|P16577|UBC4_WHEAT Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4
PE=1 SV=1
Length = 184
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 319 DLISVFEVFLPRLHLYPNISSLLNREVAGVITQ 351
DL+++FEVFLP+L LYPN S LN E A ++ +
Sbjct: 98 DLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMR 130
>sp|P42749|UBC5_ARATH Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5
PE=2 SV=2
Length = 185
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 319 DLISVFEVFLPRLHLYPNISSLLNREVAGVITQ 351
DL++VFE FLP+L LYPN S LN E A ++ +
Sbjct: 98 DLVNVFETFLPQLLLYPNPSDPLNGEAAALMMR 130
>sp|P42748|UBC4_ARATH Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4
PE=2 SV=2
Length = 187
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 319 DLISVFEVFLPRLHLYPNISSLLNREVAGVITQ 351
DL++VFE FLP+L LYPN S LN E A ++ +
Sbjct: 98 DLVNVFETFLPQLLLYPNPSDPLNGEAAALMMR 130
>sp|Q9P7R4|UBC8_SCHPO Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubc8 PE=3 SV=1
Length = 184
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 319 DLISVFEVFLPRLHLYPNISSLLNREVAGVI 349
D+I++FEVFLP+L YPN S LN E A ++
Sbjct: 98 DMINIFEVFLPQLLRYPNASDPLNGEAAALL 128
>sp|P42750|UBC6_ARATH Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6
PE=2 SV=2
Length = 183
Score = 38.9 bits (89), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 319 DLISVFEVFLPRLHLYPNISSLLNREVAGVITQ 351
DLI+VFE FLP+L LYPN S N E A ++ +
Sbjct: 98 DLINVFESFLPQLLLYPNPSDPFNGEAASLLMR 130
>sp|B5YJ65|OBG_THEYD GTPase obg OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=obg PE=3 SV=1
Length = 337
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 88 ISKRSLKKALSQLADPVHENPQSELEKVKRSLRKVNNPLVENS-AFVQSEFEIEKQNHSL 146
+ + SL L ++D +P+ + EK+++ L N L + A V ++ +I + L
Sbjct: 235 VERTSLLLHLVDVSDFSESDPREDFEKIQKELELYNPALTKKPFAVVGTKIDIAYKGDRL 294
Query: 147 DKL------------PTSSICHEGLEWSLRYLGEKMKKKTTL 176
KL P S++ EG++ L YL EK+ KK L
Sbjct: 295 GKLKKYCEEKGIDFFPISAVKKEGIDKLLHYLSEKVGKKCGL 336
>sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=2
Length = 5193
Score = 33.5 bits (75), Expect = 2.3, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 295 INFSSSKFSHIDSQFVSFSMYLYADL 320
+NF++S FS++DSQ + FS Y YA L
Sbjct: 4301 LNFNASTFSYMDSQLLPFSTYSYAIL 4326
>sp|Q54IK9|HOOK_DICDI Protein hook homolog OS=Dictyostelium discoideum GN=hook PE=3 SV=1
Length = 734
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 107 NPQSELEKVKRSLRKVNNPLVENSAFVQSEFEIEKQNHSLDKLPTSSIC---HEGLEWSL 163
N Q+E+EK+KR +++ N L E S S +++ ++DK T +C HE +
Sbjct: 214 NLQNEIEKLKREKQEIQNDLDE-SNIQLSNVTMDRDRITIDKQKTEEVCSSLHESIIGLQ 272
Query: 164 RYLGEKMKKKTTL 176
+ L E M + TT+
Sbjct: 273 KQLDETMAQTTTM 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,392,656
Number of Sequences: 539616
Number of extensions: 5096615
Number of successful extensions: 17115
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 16853
Number of HSP's gapped (non-prelim): 408
length of query: 367
length of database: 191,569,459
effective HSP length: 119
effective length of query: 248
effective length of database: 127,355,155
effective search space: 31584078440
effective search space used: 31584078440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)