Query 042697
Match_columns 367
No_of_seqs 270 out of 458
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0416 Ubiquitin-protein liga 99.7 4.2E-17 9E-22 147.5 3.7 46 309-354 88-133 (189)
2 PF14244 UBN2_3: gag-polypepti 99.5 7.1E-15 1.5E-19 128.8 3.5 75 1-75 63-142 (152)
3 PF13178 DUF4005: Protein of u 99.5 1E-13 2.2E-18 116.3 6.8 54 250-306 34-91 (102)
4 KOG0419 Ubiquitin-protein liga 98.4 1.9E-07 4.1E-12 82.4 3.4 51 307-358 89-139 (152)
5 COG5078 Ubiquitin-protein liga 98.2 8.3E-07 1.8E-11 80.0 3.3 42 312-354 96-137 (153)
6 PF14223 UBN2: gag-polypeptide 98.2 2.1E-06 4.5E-11 71.9 4.3 55 20-75 1-62 (119)
7 KOG0417 Ubiquitin-protein liga 97.9 7.6E-06 1.6E-10 73.4 3.7 41 313-354 92-132 (148)
8 KOG0420 Ubiquitin-protein liga 97.8 1.6E-05 3.4E-10 73.0 3.0 44 310-354 117-160 (184)
9 PTZ00390 ubiquitin-conjugating 97.8 1.6E-05 3.4E-10 71.1 3.0 41 312-353 92-132 (152)
10 PLN00172 ubiquitin conjugating 97.7 2.3E-05 5E-10 69.5 3.0 42 312-354 91-132 (147)
11 KOG0421 Ubiquitin-protein liga 97.5 7.9E-05 1.7E-09 67.0 3.9 53 309-362 116-172 (175)
12 PF14227 UBN2_2: gag-polypepti 97.5 0.00015 3.2E-09 60.7 4.6 57 19-76 1-61 (119)
13 PF00179 UQ_con: Ubiquitin-con 97.3 0.00021 4.6E-09 61.8 3.4 41 313-354 90-130 (140)
14 cd00195 UBCc Ubiquitin-conjuga 97.0 0.00051 1.1E-08 59.6 3.3 40 313-353 91-130 (141)
15 smart00212 UBCc Ubiquitin-conj 96.9 0.00087 1.9E-08 58.4 3.2 41 312-353 90-130 (145)
16 KOG0423 Ubiquitin-protein liga 95.9 0.0032 6.8E-08 58.4 1.2 52 294-352 88-139 (223)
17 KOG0424 Ubiquitin-protein liga 94.1 0.044 9.6E-07 49.6 3.1 41 313-354 102-142 (158)
18 KOG0418 Ubiquitin-protein liga 92.4 0.12 2.6E-06 48.6 3.2 43 310-353 95-137 (200)
19 KOG0425 Ubiquitin-protein liga 88.8 0.35 7.7E-06 44.4 2.9 42 310-352 107-148 (171)
20 KOG0422 Ubiquitin-protein liga 81.6 1.4 3E-05 40.0 3.1 55 295-355 81-135 (153)
21 PF03732 Retrotrans_gag: Retro 75.3 1.4 3E-05 34.1 1.1 48 25-72 28-79 (96)
22 KOG0426 Ubiquitin-protein liga 74.1 3.7 8.1E-05 37.0 3.5 50 304-354 100-149 (165)
23 PF13797 Post_transc_reg: Post 39.3 50 0.0011 27.3 4.1 32 21-52 29-60 (87)
24 PF03564 DUF1759: Protein of u 31.5 53 0.0012 28.1 3.3 70 6-77 36-116 (145)
No 1
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.2e-17 Score=147.53 Aligned_cols=46 Identities=35% Similarity=0.478 Sum_probs=42.0
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 309 FVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 309 ~~~~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-|--.|+|||||+||||+||||||+||||+||||+|||+||+++..
T Consensus 88 ViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~ 133 (189)
T KOG0416|consen 88 VINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPE 133 (189)
T ss_pred HHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHH
Confidence 3445699999999999999999999999999999999999999653
No 2
>PF14244 UBN2_3: gag-polypeptide of LTR copia-type
Probab=99.51 E-value=7.1e-15 Score=128.76 Aligned_cols=75 Identities=31% Similarity=0.558 Sum_probs=68.9
Q ss_pred CceecccccHHHHhhccccccHHHHHHHHHHHhcCCCChhhHHHhhhhhhhchh---hHHHHhcchhhhh--hccCCCCC
Q 042697 1 MSWLINSIEVSIGKTHLFLPTAKDVWDAVRETYSDLKNSSQILELKTRLCKLGK---VIVQFLSRPKRSV--RRNPAANV 75 (367)
Q Consensus 1 mSWLlNSmspeI~~tv~~~~TAKEIWd~LkqrYSd~~n~aRIfqLk~qI~~l~Q---SVeeYygKLKrLw--dEL~ai~~ 75 (367)
++||+|||+++|+.+|++++||++||+.|+++|++..+.+|+|+|+.+|+.++| +|.+||++|+++| ++|+.+..
T Consensus 63 ~swl~~sis~~i~~~i~~~~tak~~W~~L~~~f~~~~~~~r~~~L~~~l~~~kq~~~sv~ey~~~lk~l~~~~el~~~~~ 142 (152)
T PF14244_consen 63 LSWLLNSISPDILSTIIFCETAKEIWDALKERFSQKSNASRVFQLRNELHSLKQGDKSVTEYFNKLKSLWQEDELDEYRP 142 (152)
T ss_pred HHHHHHhhcHHHHhhhHhhhhHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHHHHHhCcCC
Confidence 489999999999999999999999999999999955559999999999999966 9999999999999 77777664
No 3
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.46 E-value=1e-13 Score=116.35 Aligned_cols=54 Identities=50% Similarity=0.474 Sum_probs=44.6
Q ss_pred CchhhhhhhhHHHhhhhcCCCCCCCCcc---CCCCCCCCCCCCCCCCCC-CCCCCCCCcch
Q 042697 250 LPSYIAATESAKAKLRLQGSSRSSEDGA---EKNSGTGRHSRFELPYNI-NFSSSKFSHID 306 (367)
Q Consensus 250 ~PsYMa~T~Sakak~r~~~~pr~~~~~~---~~~~~~~r~s~~~lp~~~-ng~~~s~spr~ 306 (367)
+|+|||+|||||||+|+|++||++++.. ++...++||| ||... ++...+++++.
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S---~~~~~~~~~~~~~~~~~ 91 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLS---LPGSSNSGSSSSRSPRT 91 (102)
T ss_pred CCCccchhhhhhhhhhccCCcccCCCccccccccccccccc---cCCCCCCCcCCCCCCcc
Confidence 9999999999999999999999999874 4556789999 88644 46666667664
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.9e-07 Score=82.42 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=45.6
Q ss_pred hhhhhhhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhhhhhh
Q 042697 307 SQFVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHYLCSK 358 (367)
Q Consensus 307 ~~~~~~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~~~~~ 358 (367)
--.+.--|.|.|||..|+.. |+.||.+|||.+|.|.|||+||.+++-.|-+
T Consensus 89 lDiLqNrWsp~Ydva~ILts-iQslL~dPn~~sPaN~eAA~Lf~e~~rey~r 139 (152)
T KOG0419|consen 89 LDILQNRWSPTYDVASILTS-IQSLLNDPNPNSPANSEAARLFSENKREYER 139 (152)
T ss_pred HHHHhcCCCCchhHHHHHHH-HHHHhcCCCCCCcccHHHHHHHhhChHHHHH
Confidence 34556689999999999985 9999999999999999999999999887754
No 5
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=8.3e-07 Score=80.00 Aligned_cols=42 Identities=26% Similarity=0.137 Sum_probs=39.0
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.|+|.+||.+ |..||..||++||||.|||.+|.+++.
T Consensus 96 ~~WsP~~~l~sILls-l~slL~~PN~~~Pln~daa~~~~~d~~ 137 (153)
T COG5078 96 DRWSPVYTLETILLS-LQSLLLSPNPDSPLNTEAATLYREDKE 137 (153)
T ss_pred CCCCccccHHHHHHH-HHHHHcCCCCCCCCChHHHHHHHhCHH
Confidence 679999999999997 999999999999999999999998654
No 6
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=98.16 E-value=2.1e-06 Score=71.89 Aligned_cols=55 Identities=29% Similarity=0.487 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHHHhcCCCCh---hhHHHhhhhhhhch----hhHHHHhcchhhhhhccCCCCC
Q 042697 20 PTAKDVWDAVRETYSDLKNS---SQILELKTRLCKLG----KVIVQFLSRPKRSVRRNPAANV 75 (367)
Q Consensus 20 ~TAKEIWd~LkqrYSd~~n~---aRIfqLk~qI~~l~----QSVeeYygKLKrLwdEL~ai~~ 75 (367)
.||+++|+.|+.+|. ..+. +++.+|+.++..+. .+|.+|+++++.++++|..+|.
T Consensus 1 ~tA~e~W~~L~~~y~-~~~~~~~~~~~~L~~~l~~~k~~~~~sv~~y~~~~~~i~~~L~~~g~ 62 (119)
T PF14223_consen 1 KTAKEAWDALKKRYE-GQSKVKQARVQQLKSQLENLKMKDGESVDEYISRLKEIVDELRAIGK 62 (119)
T ss_pred ChHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhhhhhhcCC
Confidence 589999999999999 7889 99999999999984 3999999999999999998884
No 7
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=7.6e-06 Score=73.42 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=38.2
Q ss_pred hhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 313 SMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 313 ~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
.|.|.++|..|+. +|.+||+.|||+|||++|||.+|+.++-
T Consensus 92 ~WsPAl~i~~Vll-sI~sLL~~PnpddPL~~~ia~~~k~d~~ 132 (148)
T KOG0417|consen 92 QWSPALTISKVLL-SICSLLSDPNPDDPLVPDIAELYKTDRA 132 (148)
T ss_pred cCChhhHHHHHHH-HHHHHhcCCCCCccccHHHHHHHHhhHH
Confidence 4999999999998 5999999999999999999999998654
No 8
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.6e-05 Score=73.04 Aligned_cols=44 Identities=27% Similarity=0.199 Sum_probs=39.5
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 310 VSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 310 ~~~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
+---|.|..+|..|+.+ |..|+.+|||+||||.|||.++.++.-
T Consensus 117 LRedW~P~lnL~sIi~G-L~~LF~epn~eDpLN~eAA~~l~~n~e 160 (184)
T KOG0420|consen 117 LREDWRPVLNLNSIIYG-LQFLFLEPNPEDPLNKEAAAVLKSNRE 160 (184)
T ss_pred HHhcCccccchHHHHHH-HHHHhccCCCcccccHHHHHHHHhCHH
Confidence 34459999999999998 999999999999999999999988653
No 9
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=97.77 E-value=1.6e-05 Score=71.14 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=38.2
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.+.|..|+.. |..||..|||+||||.|||.+|.+++
T Consensus 92 ~~W~p~~ti~~iL~~-i~~ll~~P~~~~pln~~aa~~~~~d~ 132 (152)
T PTZ00390 92 DKWSPALQIRTVLLS-IQALLSAPEPDDPLDTSVADHFKNNR 132 (152)
T ss_pred ccCCCCCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCH
Confidence 469999999999985 99999999999999999999999854
No 10
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=97.71 E-value=2.3e-05 Score=69.52 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=38.5
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.|+|..|+.. |..||..||++||||.|||.+|.++..
T Consensus 91 ~~W~p~~ti~~il~~-i~~ll~~P~~~~p~n~~aa~~~~~~~~ 132 (147)
T PLN00172 91 DQWSPALTVSKVLLS-ISSLLTDPNPDDPLVPEIARVFKENRS 132 (147)
T ss_pred CCCCCcCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCHH
Confidence 369999999999985 999999999999999999999998643
No 11
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=7.9e-05 Score=66.99 Aligned_cols=53 Identities=21% Similarity=0.148 Sum_probs=43.1
Q ss_pred hhhhhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHh----hhhhhhhhhhh
Q 042697 309 FVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQ----LHYLCSKSERQ 362 (367)
Q Consensus 309 ~~~~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~----~~~~~~~~~~~ 362 (367)
.+---|.+.||+..|+.+ |+.||.+||-++|||..||.||.. .+|+-.-|+.+
T Consensus 116 ILkdKWSa~YdVrTILLS-iQSLLGEPNn~SPLNaqAAelW~d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 116 ILKDKWSAVYDVRTILLS-IQSLLGEPNNSSPLNAQAAELWSDQEEYKKYLEALYKEI 172 (175)
T ss_pred HHHHHHHHHHhHHHHHHH-HHHHhCCCCCCCcchhHHHHHhcCHHHHHHHHHHHhhcc
Confidence 344569999999999986 999999999999999999999974 34555555543
No 12
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type
Probab=97.47 E-value=0.00015 Score=60.66 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=51.4
Q ss_pred cccHHHHHHHHHHHhcCCCChhhHHHhhhhhhhc----hhhHHHHhcchhhhhhccCCCCCC
Q 042697 19 LPTAKDVWDAVRETYSDLKNSSQILELKTRLCKL----GKVIVQFLSRPKRSVRRNPAANVD 76 (367)
Q Consensus 19 ~~TAKEIWd~LkqrYSd~~n~aRIfqLk~qI~~l----~QSVeeYygKLKrLwdEL~ai~~e 76 (367)
|.||+++|+.|+..|. ..+.+.-..|..++..+ +.+|.+|..++..++++|..++++
T Consensus 1 ~~ta~~~W~~L~~~y~-~~~~~~~~~l~~kl~~~k~~~~~~v~~hi~~~~~l~~~L~~~g~~ 61 (119)
T PF14227_consen 1 CKTAKEMWDKLKKKYE-KKSFANKIYLLRKLYSLKMDEGGSVRDHINEFRSLVNQLKSLGVP 61 (119)
T ss_pred CCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhHhccchhHHHHHHHHHHHHHhhcccccc
Confidence 6899999999999999 78888888889999988 448999999999999999999854
No 13
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=97.28 E-value=0.00021 Score=61.78 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=36.9
Q ss_pred hhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 313 SMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 313 ~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
.|.|.++|..|+.. |..||.+||+++|+|.|||.+|.++.-
T Consensus 90 ~W~p~~~i~~il~~-i~~ll~~p~~~~~~n~~a~~~~~~~~~ 130 (140)
T PF00179_consen 90 SWSPSYTIESILLS-IQSLLSEPNPEDPLNEEAAELYKNDRE 130 (140)
T ss_dssp TC-TTSHHHHHHHH-HHHHHHSTCTTSTSSHHHHHHHHHCHH
T ss_pred cCCcccccccHHHH-HHHHHhCCCCCCcchHHHHHHHHHCHH
Confidence 49999999999985 999999999999999999999998753
No 14
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=97.03 E-value=0.00051 Score=59.60 Aligned_cols=40 Identities=28% Similarity=0.147 Sum_probs=36.8
Q ss_pred hhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 313 SMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 313 ~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
.|.|.|+|..|+.. |..||.+||+++|+|.|||.+|.++.
T Consensus 91 ~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~~aa~~~~~~~ 130 (141)
T cd00195 91 GWSPAYTLRTVLLS-LQSLLNEPNPSDPLNAEAAKLYKENR 130 (141)
T ss_pred CcCCcCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCH
Confidence 49999999999986 99999999999999999999998743
No 15
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=96.85 E-value=0.00087 Score=58.41 Aligned_cols=41 Identities=22% Similarity=0.118 Sum_probs=38.0
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.++|..|+.. |..||..||+.+|+|.|||.+|.++.
T Consensus 90 ~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~eaa~~~~~~~ 130 (145)
T smart00212 90 EKWSPATTLETVLLS-IQSLLSEPNPDSPLNADAATLYKKNR 130 (145)
T ss_pred CCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCH
Confidence 479999999999986 99999999999999999999998764
No 16
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0032 Score=58.37 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=44.7
Q ss_pred CCCCCCCCCCcchhhhhhhhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhh
Q 042697 294 NINFSSSKFSHIDSQFVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQL 352 (367)
Q Consensus 294 ~~ng~~~s~spr~~~~~~~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~ 352 (367)
..||++- ---+---|+|-+.|.+|+.+ |.+||..|||.+-||.||++++++.
T Consensus 88 aaNGEIC------VNtLKkDW~p~LGirHvLlt-ikCLLI~PnPESALNEeAGkmLLEn 139 (223)
T KOG0423|consen 88 AANGEIC------VNTLKKDWNPSLGIRHVLLT-IKCLLIEPNPESALNEEAGKMLLEN 139 (223)
T ss_pred ccCceeh------hhhhhcccCcccchhhHhhh-hheeeecCChHHHHhHHHHHHHHHh
Confidence 4788875 23456689999999999985 9999999999999999999999873
No 17
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.044 Score=49.57 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=37.7
Q ss_pred hhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 313 SMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 313 ~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
.|.|...|-+|+-. |++||..||+.||.|.||-.+|.+++-
T Consensus 102 ~W~paitikqiL~g-IqdLL~~Pn~~~pAq~eA~~~~~~~r~ 142 (158)
T KOG0424|consen 102 DWRPAITIKQILLG-IQDLLDTPNITSPAQTEAYTIYCQDRA 142 (158)
T ss_pred CCCchhhHHHHHHH-HHHHhcCCCCCCchhhHHHHHHhhCHH
Confidence 39999999999987 999999999999999999999987664
No 18
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.12 Score=48.56 Aligned_cols=43 Identities=16% Similarity=-0.018 Sum_probs=38.8
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 310 VSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 310 ~~~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
+---|.|.+.|..+|-+ |+.||+-|+|.||....+|.+|++..
T Consensus 95 lkd~Wa~slTlrtvLis-lQalL~~pEp~dPqDavva~qy~~n~ 137 (200)
T KOG0418|consen 95 LKDQWAASLTLRTVLIS-LQALLCAPEPKDPQDAVVAEQYVDNY 137 (200)
T ss_pred hhcccchhhhHHHHHHH-HHHHHcCCCCCChHHHHHHHHHhhhH
Confidence 45579999999999986 99999999999999999999998753
No 19
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=0.35 Score=44.43 Aligned_cols=42 Identities=14% Similarity=-0.023 Sum_probs=37.8
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhh
Q 042697 310 VSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQL 352 (367)
Q Consensus 310 ~~~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~ 352 (367)
-+--|+|...+..|+.+ |=.||..||-.+|.|-|||..|.+.
T Consensus 107 ~~erW~Pv~tvetIllS-iIsmL~~PN~~SPANVDAa~~~Ren 148 (171)
T KOG0425|consen 107 PSERWLPVQTVETILLS-IISMLNSPNDESPANVDAAKEWREN 148 (171)
T ss_pred hhhccCCccchhHhHHH-HHHHHcCCCCCCccchHHHHHHhhC
Confidence 34569999999999986 8899999999999999999999875
No 20
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.63 E-value=1.4 Score=39.96 Aligned_cols=55 Identities=15% Similarity=-0.108 Sum_probs=45.4
Q ss_pred CCCCCCCCCcchhhhhhhhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhhh
Q 042697 295 INFSSSKFSHIDSQFVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHYL 355 (367)
Q Consensus 295 ~ng~~~s~spr~~~~~~~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~~ 355 (367)
.+|++- +|.+.. --|.|.-..-.|+.. |=.|+..|+|+.||+.|+|..|.+++-+
T Consensus 81 e~gqvC--lPiis~---EnWkP~T~teqVlqa-Li~liN~P~pe~plr~dlA~ey~~d~~k 135 (153)
T KOG0422|consen 81 EKGQVC--LPIISA---ENWKPATRTEQVLQA-LIALINDPEPEHPLRIDLAEEYIKDPKK 135 (153)
T ss_pred CCCcee--eeeeec---ccccCcccHHHHHHH-HHHHhcCCCccccchhhHHHHHHHCHHH
Confidence 346663 677643 479999988888885 8899999999999999999999998754
No 21
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=75.35 E-value=1.4 Score=34.13 Aligned_cols=48 Identities=15% Similarity=0.407 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCC-ChhhHHHhhhhhhhchh---hHHHHhcchhhhhhccCC
Q 042697 25 VWDAVRETYSDLK-NSSQILELKTRLCKLGK---VIVQFLSRPKRSVRRNPA 72 (367)
Q Consensus 25 IWd~LkqrYSd~~-n~aRIfqLk~qI~~l~Q---SVeeYygKLKrLwdEL~a 72 (367)
-|+.++..|-+.- +......++.++..+.| +|.+|+.++..++..+..
T Consensus 28 ~W~~~~~~~~~~f~~~~~~~~~~~~l~~l~Q~~esv~~y~~rf~~l~~~~~~ 79 (96)
T PF03732_consen 28 TWEEFKDAFRKRFFPPDRKEQARQELNSLRQGNESVREYVNRFRELARRAPP 79 (96)
T ss_pred CHHHHHHHHHHHHhhhhccccchhhhhhhhccCCcHHHHHHHHHHHHHHCCC
Confidence 4655554443222 22456778888888866 999999999999999885
No 22
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.11 E-value=3.7 Score=37.04 Aligned_cols=50 Identities=8% Similarity=-0.036 Sum_probs=42.5
Q ss_pred cchhhhhhhhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 304 HIDSQFVSFSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 304 pr~~~~~~~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
|-+-.+-.--|.|.-.+-.|+.+ .=.+|.+||-.++.|-+|+.+|.+++-
T Consensus 100 P~~YEls~ERWSPVQSvEKILLS-V~SMLaEPNdESgANvdA~~mWRe~R~ 149 (165)
T KOG0426|consen 100 PMGYELSAERWSPVQSVEKILLS-VVSMLAEPNDESGANVDACKMWREDRE 149 (165)
T ss_pred CccchhhhhcCChHHHHHHHHHH-HHHHHcCCCcccCcccHHHHHHHHhHH
Confidence 34445556679999999999986 889999999999999999999999874
No 23
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=39.26 E-value=50 Score=27.31 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHhcCCCChhhHHHhhhhhhhc
Q 042697 21 TAKDVWDAVRETYSDLKNSSQILELKTRLCKL 52 (367)
Q Consensus 21 TAKEIWd~LkqrYSd~~n~aRIfqLk~qI~~l 52 (367)
|..+||+.|...+=+.....+++++-.+|..+
T Consensus 29 t~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl 60 (87)
T PF13797_consen 29 TEEDLWSYLTEKKWKKKKPPRLHELVNDILSL 60 (87)
T ss_pred CHHHHHHHHHHHHhccCCCcCHHHHHHHHHcC
Confidence 78999999998776556668999999999887
No 24
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=31.49 E-value=53 Score=28.07 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=46.3
Q ss_pred ccccHHHHhhcccc----ccHHHHHHHHHHHhcCCCChhhHHHhhhhhhhc-------hhhHHHHhcchhhhhhccCCCC
Q 042697 6 NSIEVSIGKTHLFL----PTAKDVWDAVRETYSDLKNSSQILELKTRLCKL-------GKVIVQFLSRPKRSVRRNPAAN 74 (367)
Q Consensus 6 NSmspeI~~tv~~~----~TAKEIWd~LkqrYSd~~n~aRIfqLk~qI~~l-------~QSVeeYygKLKrLwdEL~ai~ 74 (367)
..+.-+....|..+ .+=..+|+.|+++|. .....+..+..++..+ .+.+..++.++......|..++
T Consensus 36 ~~L~G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg--~~~~i~~~~~~~l~~l~~~~~~d~~~L~~~~~~v~~~i~~L~~lg 113 (145)
T PF03564_consen 36 SCLKGEAKELIRGLPLSEENYEEAWELLEERYG--NPRRIIQALLEELRNLPPISNDDPEALRSLVDKVNNCIRALKALG 113 (145)
T ss_pred HHhcchHHHHHHcccccchhhHHHHHHHHHHhC--CchHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444 334789999999997 3333445566666665 2378888888888888888877
Q ss_pred CCC
Q 042697 75 VDS 77 (367)
Q Consensus 75 ~es 77 (367)
.+.
T Consensus 114 ~~~ 116 (145)
T PF03564_consen 114 VNV 116 (145)
T ss_pred CCC
Confidence 544
Done!