Query 042697
Match_columns 367
No_of_seqs 270 out of 458
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:57:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2onu_A Ubiquitin-conjugating e 98.2 7.5E-07 2.6E-11 77.9 3.2 42 312-353 90-131 (152)
2 2z5d_A Ubiquitin-conjugating e 98.1 1.2E-06 4E-11 79.1 2.6 42 312-353 112-153 (179)
3 2c2v_B Ubiquitin-conjugating e 98.0 2.7E-06 9.4E-11 74.3 3.0 42 312-354 95-136 (154)
4 1yf9_A Ubiquitin carrier prote 97.9 3.4E-06 1.2E-10 75.2 2.9 42 312-353 99-140 (171)
5 2ayv_A Ubiquitin-conjugating e 97.9 3.9E-06 1.3E-10 74.5 3.1 42 312-354 111-152 (166)
6 1ayz_A UBC2, ubiquitin-conjuga 97.9 4.2E-06 1.4E-10 74.5 3.3 41 312-353 94-134 (169)
7 2pwq_A Ubiquitin conjugating e 97.9 4.2E-06 1.4E-10 77.5 3.1 41 312-353 114-154 (216)
8 1yrv_A Ubiquitin-conjugating l 97.9 4.4E-06 1.5E-10 74.4 3.1 42 312-354 116-157 (169)
9 1zdn_A Ubiquitin-conjugating e 97.9 3.4E-06 1.2E-10 73.9 2.2 42 312-354 103-144 (158)
10 1fxt_A Ubiquitin-conjugating e 97.9 4.6E-06 1.6E-10 72.3 2.8 41 312-353 93-133 (149)
11 3k9o_A Ubiquitin-conjugating e 97.9 4.9E-06 1.7E-10 75.6 3.1 41 312-353 99-139 (201)
12 1z2u_A Ubiquitin-conjugating e 97.9 5.1E-06 1.8E-10 72.0 3.1 42 312-354 94-135 (150)
13 4gpr_A Ubiquitin-conjugating e 97.9 5.3E-06 1.8E-10 72.1 3.1 42 312-354 94-135 (151)
14 2aak_A UBC1, ubiquitin conjuga 97.9 5.8E-06 2E-10 71.9 3.3 42 312-354 94-135 (152)
15 2bep_A Ubiquitin-conjugating e 97.9 6.2E-06 2.1E-10 72.3 3.1 41 312-353 102-142 (159)
16 1wzv_A Ubiquitin-conjugating e 97.8 6.6E-06 2.3E-10 71.7 3.0 42 312-354 95-136 (155)
17 2r0j_A Ubiquitin carrier prote 97.8 6.7E-06 2.3E-10 71.3 3.0 42 312-354 91-132 (149)
18 2c4o_A Ubiquitin-conjugating e 97.8 6.8E-06 2.3E-10 72.8 3.1 42 312-354 109-150 (165)
19 3h8k_A Ubiquitin-conjugating e 97.8 9.7E-06 3.3E-10 71.2 3.5 42 312-354 107-148 (164)
20 2f4z_A Tgtwinscan_2721 - E2 do 97.8 8.2E-06 2.8E-10 74.3 3.1 42 312-354 136-177 (193)
21 3o2u_A NEDD8-conjugating enzym 97.8 8.1E-06 2.8E-10 73.9 2.9 41 312-353 123-163 (190)
22 1yh2_A HSPC150 protein similar 97.8 1E-05 3.5E-10 71.7 3.5 41 312-353 98-138 (169)
23 2ucz_A UBC7, ubiquitin conjuga 97.8 6.6E-06 2.2E-10 72.4 2.1 41 312-353 108-148 (165)
24 1tte_A Ubiquitin-conjugating e 97.8 9.8E-06 3.3E-10 75.0 3.3 41 312-353 94-134 (215)
25 1y8x_A Ubiquitin-conjugating e 97.8 8.6E-06 2.9E-10 71.7 2.8 41 312-353 94-134 (160)
26 2awf_A Ubiquitin-conjugating e 97.8 4.9E-06 1.7E-10 74.1 1.2 42 312-354 121-162 (172)
27 2e2c_A Ubiquitin conjugating e 97.8 8.1E-06 2.8E-10 71.3 2.4 40 312-353 99-138 (156)
28 3rcz_B SUMO-conjugating enzyme 97.8 1.1E-05 3.8E-10 71.4 3.3 41 313-354 108-148 (163)
29 1c4z_D UBCH7, ubiquitin conjug 97.8 9.5E-06 3.3E-10 70.6 2.7 41 312-353 93-133 (154)
30 2y9m_A Ubiquitin-conjugating e 97.8 8.9E-06 3E-10 72.4 2.6 39 312-351 111-149 (172)
31 1jat_A Ubiquitin-conjugating e 97.7 8.6E-06 3E-10 71.1 2.1 42 312-354 95-136 (155)
32 3e46_A Ubiquitin-conjugating e 97.7 1.2E-05 4E-10 76.2 3.1 41 312-353 151-191 (253)
33 3bzh_A Ubiquitin-conjugating e 97.7 1.4E-05 4.8E-10 72.7 3.5 42 312-354 138-179 (194)
34 2nvu_C NEDD8-conjugating enzym 97.7 1.2E-05 4.3E-10 72.1 3.1 41 312-353 114-154 (180)
35 2grr_A Ubiquitin-conjugating e 97.7 1.4E-05 4.9E-10 70.2 3.1 40 313-353 105-144 (161)
36 1i7k_A Ubiquitin-conjugating e 97.7 1.1E-05 3.8E-10 72.6 2.3 40 312-353 120-159 (179)
37 3fn1_B NEDD8-conjugating enzym 97.7 1.6E-05 5.5E-10 70.1 3.3 40 313-353 111-151 (167)
38 3rz3_A Ubiquitin-conjugating e 97.7 2E-05 6.7E-10 70.8 3.6 39 312-351 111-149 (183)
39 2gjd_A Ubiquitin-conjugating e 97.7 1.8E-05 6.2E-10 69.2 3.3 41 313-354 102-142 (157)
40 4ddg_A Ubiquitin-conjugating e 97.5 3.7E-05 1.3E-09 76.5 3.1 41 312-353 93-133 (399)
41 4ds2_A Ubiquitin-conjugating e 97.4 7.2E-05 2.5E-09 66.0 3.9 47 310-356 110-158 (167)
42 2q0v_A Ubiquitin-conjugating e 97.4 1.3E-05 4.4E-10 70.6 -1.4 38 313-351 118-155 (156)
43 1jat_B Ubiquitin-conjugating e 97.0 1.9E-05 6.6E-10 67.7 -4.2 36 313-349 103-138 (138)
44 2a4d_A Ubiquitin-conjugating e 96.4 0.00063 2.1E-08 60.2 0.4 35 312-347 122-157 (160)
45 2hlw_A Ubiquitin-conjugating e 96.0 0.00089 3E-08 59.7 -0.5 35 312-347 132-167 (170)
46 3ceg_A Baculoviral IAP repeat- 93.6 0.021 7E-07 56.0 1.4 41 312-353 182-227 (323)
47 2f4w_A Ubiquitin-conjugating e 74.5 2 6.9E-05 38.4 3.3 28 312-340 105-132 (187)
48 2fo3_A Ubiquitin-conjugating e 64.5 1.9 6.5E-05 35.8 0.9 26 312-338 97-122 (125)
49 3r3q_A Suppressor protein STP2 64.5 3.4 0.00012 36.5 2.5 29 310-339 132-161 (162)
50 1zuo_A Hypothetical protein LO 60.3 2.2 7.5E-05 38.1 0.5 28 313-341 135-162 (186)
51 2h2y_A Ubiquitin-conjugating e 52.0 4.7 0.00016 34.0 1.2 25 312-337 111-135 (136)
No 1
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=98.16 E-value=7.5e-07 Score=77.88 Aligned_cols=42 Identities=38% Similarity=0.561 Sum_probs=39.1
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..||..+|++||.+|||+||||.|||.+|.+++
T Consensus 90 ~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~ 131 (152)
T 2onu_A 90 QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDK 131 (152)
T ss_dssp HHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH
Confidence 469999999999998899999999999999999999998754
No 2
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=98.08 E-value=1.2e-06 Score=79.09 Aligned_cols=42 Identities=33% Similarity=0.464 Sum_probs=39.4
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..||..||..||.+|||+||||+|||.+|.++.
T Consensus 112 ~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~ 153 (179)
T 2z5d_A 112 QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRP 153 (179)
T ss_dssp HHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCH
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCH
Confidence 579999999999998899999999999999999999998754
No 3
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=97.97 E-value=2.7e-06 Score=74.25 Aligned_cols=42 Identities=17% Similarity=0.022 Sum_probs=36.9
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+|.+++.
T Consensus 95 ~~W~p~~~i~~vl~~-i~~ll~~pn~~~p~n~~aa~~~~~d~~ 136 (154)
T 2c2v_B 95 DKWSPALQIRTVLLS-IQALLSAPNPDDPLANDVAEQWKTNEA 136 (154)
T ss_dssp TSCCTTCCHHHHHHH-HHHHTTSCCCCCC--CHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHH
Confidence 579999999999985 999999999999999999999998654
No 4
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=97.93 E-value=3.4e-06 Score=75.23 Aligned_cols=42 Identities=33% Similarity=0.453 Sum_probs=38.8
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..|+..+|++||.+|||+||||.|||.+|.+++
T Consensus 99 ~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~ 140 (171)
T 1yf9_A 99 QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADR 140 (171)
T ss_dssp HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCH
T ss_pred cCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH
Confidence 479999999999998679999999999999999999998765
No 5
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=97.93 E-value=3.9e-06 Score=74.50 Aligned_cols=42 Identities=17% Similarity=0.040 Sum_probs=38.6
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.++|..|+.. |.+||.+|||+||||.|||.+|.+++.
T Consensus 111 ~~WsP~~ti~~vL~s-I~sll~~pn~~~Pln~~aa~l~~~d~~ 152 (166)
T 2ayv_A 111 DQWSPALTISKVLLS-ISSLLTDPNPDDPLVPEIAHLYKSDRM 152 (166)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHH
T ss_pred ccCCCCCcHHHHHHH-HHHHHhCCCCCchhhHHHHHHHHHCHH
Confidence 479999999999985 999999999999999999999987653
No 6
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=97.93 E-value=4.2e-06 Score=74.46 Aligned_cols=41 Identities=22% Similarity=0.146 Sum_probs=37.8
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..||.. |.+||.+|||+||||.+||.+|.+++
T Consensus 94 ~~WsP~~~i~~vL~s-i~~ll~~Pn~~~P~n~~aa~~~~~d~ 134 (169)
T 1ayz_A 94 NRWTPTYDVASILTS-IQSLFNDPNPASPANVEAATLFKDHK 134 (169)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHTCCCCSSCSSHHHHHHHHHCH
T ss_pred cCCCCcCcHHHHHHH-HHHHHhCCCCCcHHHHHHHHHHHHCH
Confidence 369999999999985 99999999999999999999998754
No 7
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=97.91 E-value=4.2e-06 Score=77.48 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=38.0
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..|+.. |++||.+|||+||||.|||.+|.+++
T Consensus 114 ~~WsP~~ti~~VL~s-I~sLL~~Pnp~dPln~eaa~~~~~d~ 154 (216)
T 2pwq_A 114 NEWSPALTIRTALLS-IQALLSDPQPDDPQDAEVAKMYKENH 154 (216)
T ss_dssp HHCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred ccCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCH
Confidence 469999999999985 99999999999999999999998764
No 8
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=97.91 E-value=4.4e-06 Score=74.38 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=38.6
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.+++.
T Consensus 116 ~~WsP~~ti~~vL~s-I~sll~~Pn~~~Pln~eaa~l~~~d~~ 157 (169)
T 1yrv_A 116 EKWNTNYTLSSILLA-LQVMLSNPVLENPVNLEAARILVKDES 157 (169)
T ss_dssp GGCCTTCCHHHHHHH-HHHHHTSCCTTSCSCHHHHHHHHSCHH
T ss_pred cCCCCcCCHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHH
Confidence 479999999999986 999999999999999999999987653
No 9
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=97.90 E-value=3.4e-06 Score=73.93 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=38.6
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+|.+++-
T Consensus 103 ~~W~p~~~i~~vL~~-i~~ll~~pn~~~p~n~~aa~~~~~d~~ 144 (158)
T 1zdn_A 103 RDWTAELGIRHVLLT-IKCLLIHPNPESALNEEAGRLLLENYE 144 (158)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCGGGCSSHHHHHHHHHCHH
T ss_pred CCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHH
Confidence 479999999999985 999999999999999999999997653
No 10
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=97.89 E-value=4.6e-06 Score=72.29 Aligned_cols=41 Identities=20% Similarity=0.024 Sum_probs=38.0
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.+++
T Consensus 93 ~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~d~ 133 (149)
T 1fxt_A 93 NAWSPVITLKSALIS-LQALLQSPEPNDPQDAEVAQHYLRDR 133 (149)
T ss_dssp TSCCTTCCHHHHHHH-HHHHHHSCCSSSCSSHHHHHHHHHCS
T ss_pred CCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCH
Confidence 469999999999985 99999999999999999999998764
No 11
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=97.89 E-value=4.9e-06 Score=75.62 Aligned_cols=41 Identities=17% Similarity=-0.053 Sum_probs=38.3
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+|.+++
T Consensus 99 ~~W~p~~~i~~vL~~-i~~ll~~p~p~~p~n~~aa~~~~~~~ 139 (201)
T 3k9o_A 99 DQWAAAMTLRTVLLS-LQALLAAAEPDDPQDAVVANQYKQNP 139 (201)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred cCCCCCCCHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHHCH
Confidence 579999999999985 99999999999999999999999864
No 12
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=97.89 E-value=5.1e-06 Score=72.05 Aligned_cols=42 Identities=17% Similarity=0.016 Sum_probs=38.5
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.+++-
T Consensus 94 ~~W~p~~~i~~vl~~-i~~ll~~pn~~~p~n~~aa~~~~~~~~ 135 (150)
T 1z2u_A 94 SQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARIYKTDRE 135 (150)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHH
T ss_pred CCCCCCCCHHHHHHH-HHHHhhCCCCCCccCHHHHHHHHHHHH
Confidence 479999999999985 999999999999999999999987653
No 13
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=97.88 E-value=5.3e-06 Score=72.12 Aligned_cols=42 Identities=26% Similarity=0.139 Sum_probs=38.9
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.+++.
T Consensus 94 ~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~d~~ 135 (151)
T 4gpr_A 94 DQWSPALTLSRVLLS-ISSLLTDPNPSDPLDPEVANVLRANKK 135 (151)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHCCCTTSCSSHHHHHHHHHCHH
T ss_pred CCCCCCCcHHHHHHH-HHHHhcCCCCCCchhHHHHHHHHHCHH
Confidence 579999999999985 999999999999999999999988653
No 14
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=97.88 E-value=5.8e-06 Score=71.86 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=38.3
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.+++.
T Consensus 94 ~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~ 135 (152)
T 2aak_A 94 NQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMYSESKR 135 (152)
T ss_dssp TSCCTTCCHHHHHHH-HHHHHTSCCTTSCSSHHHHHHHHHCHH
T ss_pred CCCCCCCcHHHHHHH-HHHHHhCCCCCccccHHHHHHHHHCHH
Confidence 369999999999985 999999999999999999999987643
No 15
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=97.86 E-value=6.2e-06 Score=72.28 Aligned_cols=41 Identities=17% Similarity=-0.053 Sum_probs=38.0
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.+++
T Consensus 102 ~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~ 142 (159)
T 2bep_A 102 DQWAAAMTLRTVLLS-LQALLAAAEPDDPQDAVVANQYKQNP 142 (159)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred ccCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCH
Confidence 359999999999985 99999999999999999999998764
No 16
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=97.84 E-value=6.6e-06 Score=71.72 Aligned_cols=42 Identities=26% Similarity=0.185 Sum_probs=38.4
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+|.+++-
T Consensus 95 ~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~ 136 (155)
T 1wzv_A 95 ENWKPCTKTCQVLEA-LNVLVNRPNIREPLRMDLADLLTQNPE 136 (155)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCSSSCSSHHHHHHHHHCHH
T ss_pred cCCCCCCcHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHH
Confidence 579999999999985 999999999999999999999987543
No 17
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=97.84 E-value=6.7e-06 Score=71.34 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=38.6
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.+++-
T Consensus 91 ~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~ 132 (149)
T 2r0j_A 91 DKWSPALQIRTVLLS-IQALLSSPEPDDPLDSKVAEHFKQDKN 132 (149)
T ss_dssp TTCCTTSCHHHHHHH-HHHHHHSCCTTSCSSCHHHHHHHHCHH
T ss_pred CCCCCCCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHH
Confidence 479999999999985 999999999999999999999987653
No 18
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=97.84 E-value=6.8e-06 Score=72.78 Aligned_cols=42 Identities=17% Similarity=0.016 Sum_probs=38.5
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.++|..|+.. |.+||.+|||+||||.|||.+|.+++-
T Consensus 109 ~~W~P~~ti~~vL~s-i~~ll~~pn~~~P~n~~aa~~~~~d~~ 150 (165)
T 2c4o_A 109 SQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARIYKTDRE 150 (165)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHHCHH
T ss_pred CCCCCcCcHHHHHHH-HHHHHhCCCCCccccHHHHHHHHHHHH
Confidence 479999999999985 999999999999999999999987653
No 19
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=97.81 E-value=9.7e-06 Score=71.18 Aligned_cols=42 Identities=10% Similarity=-0.072 Sum_probs=38.5
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+|.+++.
T Consensus 107 ~~W~p~~ti~~vL~~-i~~ll~~pn~~~p~n~~aa~~~~~~~~ 148 (164)
T 3h8k_A 107 ERWSPVQSVEKILLS-VVSMLAEPNDESGANVDASKMWRDDRE 148 (164)
T ss_dssp CCCCTTCCHHHHHHH-HHHHHHSCCCSSCSSHHHHHHHHHCHH
T ss_pred cCCCCCCcHHHHHHH-HHHHHcCCCCCCccCHHHHHHHHHCHH
Confidence 469999999999985 999999999999999999999997653
No 20
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=97.80 E-value=8.2e-06 Score=74.28 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=38.4
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+|.+++.
T Consensus 136 ~~WsP~~ti~~vL~s-I~sll~~pnp~~P~n~~aa~l~~~d~~ 177 (193)
T 2f4z_A 136 HEWSPALTIRTALLS-IQAMLADPVPTDPQDAEVAKMMIENHP 177 (193)
T ss_dssp TTCCTTSCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHH
T ss_pred ccCCCCCCHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHH
Confidence 359999999999985 999999999999999999999998653
No 21
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=97.80 E-value=8.1e-06 Score=73.94 Aligned_cols=41 Identities=27% Similarity=0.211 Sum_probs=38.4
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+|.+++
T Consensus 123 ~~W~p~~~i~~vL~~-i~~ll~~pn~~~pln~~aa~~~~~d~ 163 (190)
T 3o2u_A 123 EDWSPALDLQSIITG-LLFLFLEPNPNDPLNKDAAKLLCEGE 163 (190)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHTCH
T ss_pred CCCCCCCCHHHHHHH-HHHHHhCCCCCcchhHHHHHHHHHCH
Confidence 579999999999985 99999999999999999999999765
No 22
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=97.80 E-value=1e-05 Score=71.71 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=38.0
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+|.+++
T Consensus 98 ~~W~p~~~i~~vL~s-i~~ll~~p~~~~p~n~~aa~~~~~~~ 138 (169)
T 1yh2_A 98 GAWRPSLNIATVLTS-IQLLMSEPNPDDPLMADISSEFKYNK 138 (169)
T ss_dssp SCCCTTSCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred cCCCCCCcHHHHHHH-HHHHHhCCCCcchHhHHHHHHHHhhH
Confidence 469999999999985 99999999999999999999998765
No 23
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=97.79 E-value=6.6e-06 Score=72.42 Aligned_cols=41 Identities=12% Similarity=-0.027 Sum_probs=37.9
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.+++
T Consensus 108 ~~W~p~~~i~~vL~s-i~~ll~~Pn~~~p~n~~aa~~~~~~~ 148 (165)
T 2ucz_A 108 ERWSPVQSVEKILLS-VMSMLSEPNIESGANIDACILWRDNR 148 (165)
T ss_dssp TSCCTTCCHHHHHHH-HHHHHHSCCGGGCCCHHHHHHHHTTH
T ss_pred CCCCCcCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCH
Confidence 469999999999986 99999999999999999999998754
No 24
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=97.78 E-value=9.8e-06 Score=74.97 Aligned_cols=41 Identities=20% Similarity=0.024 Sum_probs=37.9
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..||.. |++||.+|||+||+|.|||.+|.+++
T Consensus 94 ~~WsP~~ti~~VL~s-I~sLL~~Pnp~~Pln~eaa~~~~~d~ 134 (215)
T 1tte_A 94 NAWSPVITLKSALIS-LQALLQSPEPNDPQDAEVAQHYLRDR 134 (215)
T ss_dssp CCSCTTCCHHHHHHH-HHHHHTSCCCSSCSCHHHHHHHHHCH
T ss_pred CCCCCcCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCH
Confidence 369999999999985 99999999999999999999998754
No 25
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=97.78 E-value=8.6e-06 Score=71.70 Aligned_cols=41 Identities=27% Similarity=0.196 Sum_probs=38.0
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.++|..|+.. |..||.+|||+||||+|||.+|.+++
T Consensus 94 ~~W~p~~~i~~vL~~-i~~ll~~Pn~~~p~n~~aa~~~~~~~ 134 (160)
T 1y8x_A 94 EDWKPVLTINSIIYG-LQYLFLEPNPEDPLNKEAAEVLQNNR 134 (160)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCCSSCSCHHHHHHHHSCH
T ss_pred hhccCCCCHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCH
Confidence 469999999999985 99999999999999999999998754
No 26
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=97.78 E-value=4.9e-06 Score=74.14 Aligned_cols=42 Identities=12% Similarity=-0.048 Sum_probs=21.3
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.+++.
T Consensus 121 ~~WsP~~ti~~vL~s-I~sll~~Pn~~~p~n~~aa~~~~~d~~ 162 (172)
T 2awf_A 121 ERWLPIHTVETIMIS-VISMLADPNGDSPANVDAAKEWREDRN 162 (172)
T ss_dssp TSCCTTCCHHHHHHH-HHHHHSCC-------------------
T ss_pred CCCCCcCcHHHHHHH-HHHHHHCcCCCCccCHHHHHHHHHCcH
Confidence 369999999999986 999999999999999999999997654
No 27
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=97.77 E-value=8.1e-06 Score=71.32 Aligned_cols=40 Identities=23% Similarity=0.115 Sum_probs=36.4
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+| +++
T Consensus 99 ~~W~p~~~i~~vL~s-i~~ll~~pn~~~p~n~~aa~~~-~d~ 138 (156)
T 2e2c_A 99 ENWTASYDVRTILLS-LQSLLGEPNNASPLNAQAADMW-SNQ 138 (156)
T ss_dssp TTCCTTCCHHHHHHH-HHHHTTSCCCSSCSCHHHHHHT-TCH
T ss_pred ccCCCCCcHHHHHHH-HHHHHhCCCCCCHHHHHHHHHh-cCH
Confidence 469999999999985 9999999999999999999999 543
No 28
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=97.77 E-value=1.1e-05 Score=71.35 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=37.9
Q ss_pred hhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 313 SMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 313 ~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
.|.|.|+|..|+.. |..||.+|||+||||+|||.+|.+++.
T Consensus 108 ~W~p~~ti~~vL~~-i~~ll~~P~~~~p~n~~aa~~~~~d~~ 148 (163)
T 3rcz_B 108 GWKPAITIKQILLG-IQDLLDDPNIASPAQTEAYTMFKKDKV 148 (163)
T ss_dssp TCCTTCCHHHHHHH-HHHHHTSCCTTSCSCHHHHHHHHHCHH
T ss_pred CcCCcCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHH
Confidence 49999999999985 999999999999999999999987653
No 29
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=97.76 E-value=9.5e-06 Score=70.63 Aligned_cols=41 Identities=15% Similarity=-0.014 Sum_probs=37.9
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.+++
T Consensus 93 ~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~ 133 (154)
T 1c4z_D 93 ENWKPATKTDQVIQS-LIALVNDPQPEHPLRADLAEEYSKDR 133 (154)
T ss_dssp SSCCTTCCHHHHHHH-HHHHHHSCCCSSCSCHHHHHHHHTCS
T ss_pred CCCCCCCcHHHHHHH-HHHHHcCCCCCchhhHHHHHHHHHhH
Confidence 369999999999986 99999999999999999999998754
No 30
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=97.76 E-value=8.9e-06 Score=72.38 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=37.0
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQ 351 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~ 351 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+|.+
T Consensus 111 ~~W~p~~~i~~vL~s-i~~ll~~p~~~~p~n~~aa~~~~~ 149 (172)
T 2y9m_A 111 EEWTPVWDLLHCVHA-VWRLLREPVCDSPLDVDIGNIIRC 149 (172)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHTT
T ss_pred CCCCCcCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHh
Confidence 479999999999985 999999999999999999999987
No 31
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=97.74 E-value=8.6e-06 Score=71.07 Aligned_cols=42 Identities=17% Similarity=0.058 Sum_probs=38.3
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.++.-
T Consensus 95 ~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~ 136 (155)
T 1jat_A 95 TNWSPALQIRTVLLS-IQALLASPNPNDPLANDVAEDWIKNEQ 136 (155)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCTTSTTCCTTHHHHHHCHH
T ss_pred cCCCCCCCHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHH
Confidence 379999999999985 999999999999999999999987543
No 32
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.74 E-value=1.2e-05 Score=76.24 Aligned_cols=41 Identities=17% Similarity=-0.053 Sum_probs=38.2
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+|.+++
T Consensus 151 ~~WsP~~ti~~vL~s-I~~ll~~pnp~~Pln~eaa~l~~~d~ 191 (253)
T 3e46_A 151 DQWAAAMTLRTVLLS-LQALLAAAEPDDPQDAVVANQYKQNP 191 (253)
T ss_dssp TCCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred CCCCCCCCHHHHHHH-HHHHhcCCCCCChhhHHHHHHHHHCH
Confidence 579999999999985 99999999999999999999998764
No 33
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=97.74 E-value=1.4e-05 Score=72.74 Aligned_cols=42 Identities=12% Similarity=-0.129 Sum_probs=38.5
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
-.|.|.|+|..||.. |..||.+|||+||||.|||.+|.+++.
T Consensus 138 ~~WsP~~ti~~vL~s-I~~ll~~pnp~~Pln~~aa~l~~~d~~ 179 (194)
T 3bzh_A 138 DNWSPALTISKVLLS-ICSLLTDCNPADPLVGSIATQYMTNRA 179 (194)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHH
T ss_pred ccCCCcCcHHHHHHH-HHHHHhCCCCccchhHHHHHHHHHCHH
Confidence 479999999999985 999999999999999999999987653
No 34
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=97.73 E-value=1.2e-05 Score=72.14 Aligned_cols=41 Identities=27% Similarity=0.196 Sum_probs=38.1
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..|+.. |..||.+|||+||+|+|||.+|.+++
T Consensus 114 ~~W~p~~~i~~vL~s-i~~ll~~Pn~~~p~n~~aa~~~~~d~ 154 (180)
T 2nvu_C 114 EDWKPVLTINSIIYG-LQYLFLEPNPEDPLNKEAAEVLQNNR 154 (180)
T ss_dssp TSCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHHCH
T ss_pred ccCCCCCCHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCH
Confidence 469999999999985 99999999999999999999998754
No 35
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=97.71 E-value=1.4e-05 Score=70.16 Aligned_cols=40 Identities=18% Similarity=0.075 Sum_probs=37.6
Q ss_pred hhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 313 SMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 313 ~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
.|.|.++|..|+.. |..||.+|||+||+|.|||.+|.+++
T Consensus 105 ~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~ 144 (161)
T 2grr_A 105 DWRPAITIKQILLG-IQELLNEPNIQSPAQAEAYTIYCQNR 144 (161)
T ss_dssp TCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred CcCCCCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCH
Confidence 69999999999985 99999999999999999999998765
No 36
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=97.71 E-value=1.1e-05 Score=72.57 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=36.6
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+| +++
T Consensus 120 ~~WsP~~ti~~vL~s-I~sll~~Pn~~~Pln~~aa~l~-~d~ 159 (179)
T 1i7k_A 120 EKWSALYDVRTILLS-IQSLLGEPNIDSPLNTHAAELW-KNP 159 (179)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHT-TSH
T ss_pred CcCCCCCCHHHHHHH-HHHHHhCCCCcchhhHHHHHHh-hCH
Confidence 469999999999985 9999999999999999999999 643
No 37
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=97.70 E-value=1.6e-05 Score=70.06 Aligned_cols=40 Identities=23% Similarity=-0.015 Sum_probs=37.1
Q ss_pred hhhhhhhHHHHHhhhhhhhhcC-CCCCCCCcHHHHHHHHhhh
Q 042697 313 SMYLYADLISVFEVFLPRLHLY-PNISSLLNREVAGVITQLH 353 (367)
Q Consensus 313 ~~~~~~dl~~if~~flpqLl~~-Pnp~dPLn~eaa~l~~~~~ 353 (367)
.|.|.|+|..|+.. |..||.+ |||+||||.|||.+|.+++
T Consensus 111 ~W~p~~~i~~vl~~-i~~ll~~~pn~~~p~n~eaa~~~~~~~ 151 (167)
T 3fn1_B 111 GWAPTRTLKDVVWG-LNSLFTDLLNFDDPLNIEAAEHHLRDK 151 (167)
T ss_dssp SBCTTCCHHHHHHH-HHHTTTTTCCSSSCSCHHHHHHHHHCH
T ss_pred CCCCcCcHHHHHHH-HHHHHcCCCCCCcchhHHHHHHHHHCH
Confidence 69999999999985 9999999 7999999999999998765
No 38
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=97.69 E-value=2e-05 Score=70.81 Aligned_cols=39 Identities=13% Similarity=0.004 Sum_probs=37.0
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQ 351 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~ 351 (367)
-.|.|.|+|..|+.. |..||.+|||+||||.|||.+|.+
T Consensus 111 ~~W~p~~~i~~vL~s-i~~ll~~Pn~~~p~n~~aa~~~~~ 149 (183)
T 3rz3_A 111 ERWNPTQNVRTILLS-VISLLNEPNTFSPANVDASVMYRK 149 (183)
T ss_dssp CCCCTTCCHHHHHHH-HHHHHHSCCCSSCSSHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHh
Confidence 469999999999986 999999999999999999999987
No 39
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=97.69 E-value=1.8e-05 Score=69.24 Aligned_cols=41 Identities=12% Similarity=-0.062 Sum_probs=37.9
Q ss_pred hhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhhh
Q 042697 313 SMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLHY 354 (367)
Q Consensus 313 ~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~~ 354 (367)
.|.|.++|..|+.. |..||.+|||+||+|+|||.+|.++..
T Consensus 102 ~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~ 142 (157)
T 2gjd_A 102 DWRPAITLKQIVLG-VQDLLDSPNPNSPAQEPAWRSFSRNKA 142 (157)
T ss_dssp TCCTTCCHHHHHHH-HHHHHTSCCTTCCCCHHHHHHHHHCHH
T ss_pred CCCCCCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHH
Confidence 59999999999985 999999999999999999999987643
No 40
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=97.51 E-value=3.7e-05 Score=76.53 Aligned_cols=41 Identities=17% Similarity=0.038 Sum_probs=38.2
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHhhh
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~~~ 353 (367)
-.|.|.++|..|+.. |..||.+|||+||||.|||.+|.+++
T Consensus 93 ~~W~p~~~i~~vL~~-i~~ll~~pnp~~p~n~~aa~~~~~d~ 133 (399)
T 4ddg_A 93 SQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARIYKTDR 133 (399)
T ss_dssp TSCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHHCH
T ss_pred cCCCccccHHHHHHH-HHHHHcCCCCCchhhHHHHHHHHHCH
Confidence 479999999999985 99999999999999999999998754
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=97.45 E-value=7.2e-05 Score=66.04 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=40.0
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhcC--CCCCCCCcHHHHHHHHhhhhhh
Q 042697 310 VSFSMYLYADLISVFEVFLPRLHLY--PNISSLLNREVAGVITQLHYLC 356 (367)
Q Consensus 310 ~~~~~~~~~dl~~if~~flpqLl~~--Pnp~dPLn~eaa~l~~~~~~~~ 356 (367)
+.-.|.|.++|..|+...|..|+.. |||+||||.|||.+|.+++..-
T Consensus 110 l~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f 158 (167)
T 4ds2_A 110 VNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDF 158 (167)
T ss_dssp HHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHH
T ss_pred CcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHH
Confidence 3468999999999876678888875 8999999999999999876543
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=97.42 E-value=1.3e-05 Score=70.63 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=34.6
Q ss_pred hhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHHHh
Q 042697 313 SMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVITQ 351 (367)
Q Consensus 313 ~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~~~ 351 (367)
.|.|.|+|..|+.. |..||.+|||+||+|+|||.+|.+
T Consensus 118 ~WsP~~ti~~vL~s-I~~ll~~Pn~~~p~n~~aa~~y~~ 155 (156)
T 2q0v_A 118 NWNRNYTIETILIS-LRQEMLSSANKRLPQPNEGEVYSN 155 (156)
T ss_dssp TCCTTCCHHHHHHH-HHHHTTSTTTTTCCCCCTTCBC--
T ss_pred CCCCcCcHHHHHHH-HHHHHhCCCCCCcCChHHHHHhhh
Confidence 69999999999985 999999999999999999998865
No 43
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=97.05 E-value=1.9e-05 Score=67.71 Aligned_cols=36 Identities=8% Similarity=-0.040 Sum_probs=33.6
Q ss_pred hhhhhhhHHHHHhhhhhhhhcCCCCCCCCcHHHHHHH
Q 042697 313 SMYLYADLISVFEVFLPRLHLYPNISSLLNREVAGVI 349 (367)
Q Consensus 313 ~~~~~~dl~~if~~flpqLl~~Pnp~dPLn~eaa~l~ 349 (367)
.|.|.|+|..|+.. |..||.+|||+||+|++||.+|
T Consensus 103 ~W~p~~~i~~vl~~-i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 103 DWKRAYTMETLLLD-LRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp TCCTTCCHHHHHHH-HHHHHTSHHHHTSCCCCTTCBC
T ss_pred CCCCcCcHHHHHHH-HHHHHcCCCCCCCCCcchhhcC
Confidence 79999999999986 9999999999999999998754
No 44
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=96.39 E-value=0.00063 Score=60.21 Aligned_cols=35 Identities=17% Similarity=0.010 Sum_probs=31.8
Q ss_pred hhhhhhhhHHHHHhhhhhhhhc-CCCCCCCCcHHHHH
Q 042697 312 FSMYLYADLISVFEVFLPRLHL-YPNISSLLNREVAG 347 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~-~Pnp~dPLn~eaa~ 347 (367)
-.|.|.|+|..|+.. |..||. +||++||||+|||.
T Consensus 122 ~~WsP~~ti~~vL~s-I~~ll~~~pn~~~P~n~eaa~ 157 (160)
T 2a4d_A 122 AKWQNSYSIKVVLQE-LRRLMMSKENMKLPQPPEGQC 157 (160)
T ss_dssp HTCCTTCCHHHHHHH-HHHHHTSTTTTTCCCCCTTCB
T ss_pred cCCCccCcHHHHHHH-HHHHHccCCCCCCCCChhhcc
Confidence 579999999999986 999995 79999999999984
No 45
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=96.04 E-value=0.00089 Score=59.66 Aligned_cols=35 Identities=17% Similarity=0.010 Sum_probs=31.8
Q ss_pred hhhhhhhhHHHHHhhhhhhhhc-CCCCCCCCcHHHHH
Q 042697 312 FSMYLYADLISVFEVFLPRLHL-YPNISSLLNREVAG 347 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~-~Pnp~dPLn~eaa~ 347 (367)
-.|.|.|+|..|+.. |..||. .||++||+|+|||.
T Consensus 132 ~~WsP~~ti~~vL~s-I~~ll~~~pn~~~P~n~eaa~ 167 (170)
T 2hlw_A 132 AKWQNSYSIKVVLQE-LRRLMMSKENMKLPQPPEGQC 167 (170)
T ss_dssp HTCCSSCCHHHHHHH-HHHHHHSTTTSSSCCCSSCCB
T ss_pred CCCCccCcHHHHHHH-HHHHHccCCCCCCCCCccccc
Confidence 579999999999986 999997 59999999999983
No 46
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=93.56 E-value=0.021 Score=55.96 Aligned_cols=41 Identities=15% Similarity=-0.003 Sum_probs=33.8
Q ss_pred hhhhhhh-hHHHHHhhhhhhhhc--CCCCCCCCcHHH--HHHHHhhh
Q 042697 312 FSMYLYA-DLISVFEVFLPRLHL--YPNISSLLNREV--AGVITQLH 353 (367)
Q Consensus 312 ~~~~~~~-dl~~if~~flpqLl~--~Pnp~dPLn~ea--a~l~~~~~ 353 (367)
-.|.|.+ +|..||.+ |+.||. +||++||+|.+| +.++.++.
T Consensus 182 e~WsPa~stI~~VLls-IqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~ 227 (323)
T 3ceg_A 182 EKWNPQTSSFLQVLVS-VQSLILVAEPYFNEPGYERSRGTPSGTQSS 227 (323)
T ss_dssp GSCCTTTCCHHHHHHH-HHHHTSCSSGGGGSTTGGGGTTSHHHHHHH
T ss_pred CCCCcCcCCHHHHHHH-HHHHHcCCCCCCCCccCHHHHHhhhhhhhH
Confidence 3799999 89999986 999996 888899999987 45666543
No 47
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=74.46 E-value=2 Score=38.37 Aligned_cols=28 Identities=4% Similarity=-0.191 Sum_probs=24.1
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCCCC
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNISSL 340 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~dP 340 (367)
-.|.|.|+|..|+.. |..||..|||...
T Consensus 105 ~~W~P~~ti~~vL~s-i~sll~~p~p~~g 132 (187)
T 2f4w_A 105 DTWNPAWSVSTILTG-LLSFMVEKGPTLG 132 (187)
T ss_dssp --CCTTCCHHHHHHH-HHHHHHSCCCCTT
T ss_pred cCCCCcCcHHHHHHH-HHHHhcCCCCCCc
Confidence 479999999999985 9999999999865
No 48
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=64.51 E-value=1.9 Score=35.83 Aligned_cols=26 Identities=0% Similarity=-0.197 Sum_probs=19.5
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCCC
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNIS 338 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp~ 338 (367)
-.|.|.++|..|+.. |..||.+||+.
T Consensus 97 ~~W~P~~~i~~vl~s-i~~ll~~p~~~ 122 (125)
T 2fo3_A 97 DDYNPSLSISGLVLS-IISMLSSAKEK 122 (125)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHC-----
T ss_pred CCCCCCCcHHHHHHH-HHHHHhCcccc
Confidence 469999999999986 99999999975
No 49
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=64.47 E-value=3.4 Score=36.53 Aligned_cols=29 Identities=21% Similarity=0.111 Sum_probs=25.2
Q ss_pred hhhhhhh-hhhHHHHHhhhhhhhhcCCCCCC
Q 042697 310 VSFSMYL-YADLISVFEVFLPRLHLYPNISS 339 (367)
Q Consensus 310 ~~~~~~~-~~dl~~if~~flpqLl~~Pnp~d 339 (367)
+...|.| .++|..|+.. |.+||.+|||+.
T Consensus 132 yL~~W~p~~s~L~~ll~~-l~~lf~ep~~d~ 161 (162)
T 3r3q_A 132 ILHAWDPAAMNLIMVVQE-LMSLLHEPPQDQ 161 (162)
T ss_dssp GGGSCCGGGCCHHHHHHH-HHHTTSCCCCCC
T ss_pred ccccCCCCcCcHHHHHHH-HHHHhcCCCCCC
Confidence 3357999 7999999985 999999999985
No 50
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=60.29 E-value=2.2 Score=38.15 Aligned_cols=28 Identities=7% Similarity=-0.115 Sum_probs=24.3
Q ss_pred hhhhhhhHHHHHhhhhhhhhcCCCCCCCC
Q 042697 313 SMYLYADLISVFEVFLPRLHLYPNISSLL 341 (367)
Q Consensus 313 ~~~~~~dl~~if~~flpqLl~~Pnp~dPL 341 (367)
.|.|.|+|..|+.. |..||.+|+|.--+
T Consensus 135 ~WsP~~ti~~VL~s-I~slL~~p~a~~~~ 162 (186)
T 1zuo_A 135 GWSSAYSIESVIMQ-INATLVKGKARVQF 162 (186)
T ss_dssp TCCTTSCHHHHHHH-HHHHHHHTTCEECT
T ss_pred CCCCcCcHHHHHHH-HHHHHcCCChhHhh
Confidence 69999999999986 99999999875433
No 51
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=51.98 E-value=4.7 Score=33.99 Aligned_cols=25 Identities=0% Similarity=-0.194 Sum_probs=22.5
Q ss_pred hhhhhhhhHHHHHhhhhhhhhcCCCC
Q 042697 312 FSMYLYADLISVFEVFLPRLHLYPNI 337 (367)
Q Consensus 312 ~~~~~~~dl~~if~~flpqLl~~Pnp 337 (367)
-.|.|.|+|..|+.. |..||..|+.
T Consensus 111 ~~WsP~~ti~~vL~s-i~sll~~p~~ 135 (136)
T 2h2y_A 111 DDYNPSLSISGLILS-IISMLSSAKE 135 (136)
T ss_dssp TTCCTTCCHHHHHHH-HHHHHSSSCC
T ss_pred CCCCCCCcHHHHHHH-HHHHHhCcCc
Confidence 469999999999986 9999999984
Done!