Query 042698
Match_columns 203
No_of_seqs 148 out of 1824
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:37:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.9 3.4E-21 7.3E-26 164.5 10.7 81 81-163 202-283 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 5.9E-17 1.3E-21 99.7 2.4 44 110-154 1-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.4 8.4E-14 1.8E-18 94.8 4.0 45 109-154 19-73 (73)
4 PHA02929 N1R/p28-like protein; 99.4 1.2E-13 2.6E-18 113.4 5.1 75 84-158 148-227 (238)
5 COG5540 RING-finger-containing 99.4 1E-13 2.2E-18 115.3 3.3 51 108-159 322-373 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.4 3.1E-12 6.8E-17 109.1 9.6 55 106-161 284-348 (491)
7 KOG0823 Predicted E3 ubiquitin 99.2 3.5E-11 7.6E-16 97.1 5.6 76 106-185 44-128 (230)
8 PLN03208 E3 ubiquitin-protein 99.2 7.3E-11 1.6E-15 93.6 7.2 51 107-161 16-82 (193)
9 KOG0317 Predicted E3 ubiquitin 99.2 1.6E-11 3.5E-16 101.8 3.6 52 106-161 236-287 (293)
10 KOG0802 E3 ubiquitin ligase [P 99.1 3.3E-11 7.1E-16 110.6 4.0 54 108-162 290-345 (543)
11 cd00162 RING RING-finger (Real 99.1 5.3E-11 1.1E-15 72.1 3.6 44 111-157 1-45 (45)
12 PF12861 zf-Apc11: Anaphase-pr 99.1 5E-11 1.1E-15 82.4 3.4 52 108-159 20-83 (85)
13 PF13920 zf-C3HC4_3: Zinc fing 99.1 8.3E-11 1.8E-15 74.1 3.7 46 109-158 2-48 (50)
14 PF13923 zf-C3HC4_2: Zinc fing 99.1 8.4E-11 1.8E-15 70.2 3.2 39 112-153 1-39 (39)
15 KOG0320 Predicted E3 ubiquitin 99.0 1.6E-10 3.4E-15 89.8 3.3 54 105-160 127-180 (187)
16 COG5194 APC11 Component of SCF 99.0 2.5E-10 5.4E-15 77.1 2.5 51 110-160 21-83 (88)
17 PHA02926 zinc finger-like prot 98.9 6E-10 1.3E-14 89.6 3.5 51 108-158 169-230 (242)
18 PF14634 zf-RING_5: zinc-RING 98.9 1.3E-09 2.8E-14 66.8 3.4 44 111-155 1-44 (44)
19 PF00097 zf-C3HC4: Zinc finger 98.9 1.7E-09 3.7E-14 65.0 2.7 39 112-153 1-41 (41)
20 KOG0828 Predicted E3 ubiquitin 98.8 4.1E-09 8.8E-14 93.1 5.7 50 109-159 571-635 (636)
21 smart00184 RING Ring finger. E 98.8 3.7E-09 8.1E-14 61.7 3.3 38 112-153 1-39 (39)
22 PF15227 zf-C3HC4_4: zinc fing 98.8 3.5E-09 7.6E-14 64.2 2.6 38 112-153 1-42 (42)
23 KOG1493 Anaphase-promoting com 98.8 1.1E-09 2.4E-14 73.4 0.0 50 109-158 20-81 (84)
24 smart00504 Ubox Modified RING 98.7 1.6E-08 3.5E-13 66.3 4.2 45 110-158 2-46 (63)
25 KOG2930 SCF ubiquitin ligase, 98.7 5.9E-09 1.3E-13 73.9 1.3 49 110-158 47-108 (114)
26 KOG1734 Predicted RING-contain 98.6 7.5E-09 1.6E-13 85.3 0.6 51 107-158 222-281 (328)
27 TIGR00599 rad18 DNA repair pro 98.6 2.9E-08 6.2E-13 87.3 3.7 48 107-158 24-71 (397)
28 COG5574 PEX10 RING-finger-cont 98.6 2.6E-08 5.6E-13 82.0 2.5 51 107-161 213-265 (271)
29 smart00744 RINGv The RING-vari 98.5 1.6E-07 3.5E-12 58.8 3.2 42 111-154 1-49 (49)
30 KOG2164 Predicted E3 ubiquitin 98.4 1.2E-07 2.7E-12 84.4 2.9 49 109-161 186-239 (513)
31 COG5219 Uncharacterized conser 98.4 6.5E-08 1.4E-12 91.1 0.0 52 107-158 1467-1523(1525)
32 PF13445 zf-RING_UBOX: RING-ty 98.3 3.7E-07 7.9E-12 55.5 2.8 34 112-147 1-35 (43)
33 PF11793 FANCL_C: FANCL C-term 98.3 1.3E-07 2.8E-12 63.7 0.8 50 110-159 3-67 (70)
34 KOG0804 Cytoplasmic Zn-finger 98.3 2E-07 4.4E-12 81.7 1.7 49 107-158 173-222 (493)
35 KOG0827 Predicted E3 ubiquitin 98.2 5.9E-07 1.3E-11 77.6 2.1 48 110-158 5-56 (465)
36 TIGR00570 cdk7 CDK-activating 98.2 1.7E-06 3.6E-11 73.6 4.0 52 109-161 3-57 (309)
37 PF04564 U-box: U-box domain; 98.1 3.2E-06 7E-11 57.3 3.1 48 109-160 4-52 (73)
38 KOG0287 Postreplication repair 98.1 1.3E-06 2.8E-11 74.4 1.3 48 109-160 23-70 (442)
39 COG5432 RAD18 RING-finger-cont 98.1 2E-06 4.3E-11 71.9 2.3 49 108-160 24-72 (391)
40 KOG2177 Predicted E3 ubiquitin 98.0 2.2E-06 4.8E-11 71.2 1.7 43 108-154 12-54 (386)
41 KOG4265 Predicted E3 ubiquitin 97.9 8E-06 1.7E-10 70.1 3.6 52 107-162 288-340 (349)
42 KOG1645 RING-finger-containing 97.9 7.6E-06 1.6E-10 71.3 3.2 49 108-156 3-54 (463)
43 KOG4445 Uncharacterized conser 97.8 6.9E-06 1.5E-10 69.0 1.9 52 109-161 115-189 (368)
44 KOG0311 Predicted E3 ubiquitin 97.8 2.7E-06 5.9E-11 72.8 -1.5 57 107-166 41-98 (381)
45 KOG3970 Predicted E3 ubiquitin 97.8 1.4E-05 3E-10 64.7 2.1 53 107-161 48-108 (299)
46 KOG0825 PHD Zn-finger protein 97.7 7.3E-06 1.6E-10 76.3 -0.2 51 109-160 123-173 (1134)
47 PF14835 zf-RING_6: zf-RING of 97.6 1.4E-05 3.1E-10 52.2 0.2 46 110-160 8-53 (65)
48 KOG1039 Predicted E3 ubiquitin 97.6 3.4E-05 7.4E-10 66.9 2.0 50 108-157 160-220 (344)
49 PF11789 zf-Nse: Zinc-finger o 97.5 8.7E-05 1.9E-09 47.9 2.7 41 109-152 11-53 (57)
50 KOG0978 E3 ubiquitin ligase in 97.5 3.3E-05 7.3E-10 72.0 1.0 47 110-160 644-691 (698)
51 KOG1785 Tyrosine kinase negati 97.4 0.0001 2.2E-09 64.3 2.8 53 110-166 370-424 (563)
52 PF05883 Baculo_RING: Baculovi 97.4 6.5E-05 1.4E-09 56.4 1.1 35 109-144 26-66 (134)
53 KOG4172 Predicted E3 ubiquitin 97.4 4.6E-05 1E-09 48.1 0.2 47 109-159 7-55 (62)
54 KOG0824 Predicted E3 ubiquitin 97.3 0.0001 2.2E-09 62.0 2.0 48 109-160 7-55 (324)
55 KOG1428 Inhibitor of type V ad 97.2 0.00022 4.8E-09 70.6 3.1 53 105-158 3482-3544(3738)
56 KOG0297 TNF receptor-associate 97.0 0.00032 6.8E-09 62.3 2.1 54 107-163 19-72 (391)
57 KOG1941 Acetylcholine receptor 97.0 0.00024 5.1E-09 61.9 1.1 45 109-154 365-412 (518)
58 KOG4159 Predicted E3 ubiquitin 97.0 0.00048 1E-08 60.9 2.7 50 107-160 82-131 (398)
59 KOG1952 Transcription factor N 96.9 0.00036 7.8E-09 65.9 1.6 51 107-157 189-246 (950)
60 KOG0801 Predicted E3 ubiquitin 96.8 0.00042 9E-09 53.5 0.6 42 95-138 164-205 (205)
61 KOG1571 Predicted E3 ubiquitin 96.7 0.00021 4.5E-09 61.6 -1.8 45 109-160 305-349 (355)
62 KOG0826 Predicted E3 ubiquitin 96.7 0.0046 9.9E-08 52.9 6.1 45 106-153 297-341 (357)
63 PF10367 Vps39_2: Vacuolar sor 96.6 0.00092 2E-08 48.0 1.3 32 108-141 77-108 (109)
64 PHA02862 5L protein; Provision 96.5 0.0023 5E-08 48.6 2.9 48 109-159 2-54 (156)
65 PHA02825 LAP/PHD finger-like p 96.4 0.0038 8.1E-08 48.2 3.6 50 108-160 7-61 (162)
66 PF12906 RINGv: RING-variant d 96.1 0.0041 8.9E-08 38.4 1.9 41 112-153 1-47 (47)
67 KOG1814 Predicted E3 ubiquitin 96.1 0.0036 7.8E-08 55.0 2.2 46 109-155 184-237 (445)
68 KOG2879 Predicted E3 ubiquitin 96.0 0.027 5.7E-07 47.2 7.0 51 107-160 237-289 (298)
69 COG5152 Uncharacterized conser 96.0 0.0025 5.5E-08 50.8 1.0 43 110-156 197-239 (259)
70 KOG2660 Locus-specific chromos 96.0 0.0016 3.4E-08 55.7 -0.2 48 108-158 14-61 (331)
71 PHA03096 p28-like protein; Pro 96.0 0.0034 7.3E-08 53.3 1.6 37 110-146 179-219 (284)
72 PF14446 Prok-RING_1: Prokaryo 95.9 0.012 2.5E-07 37.4 3.5 34 109-142 5-38 (54)
73 KOG3039 Uncharacterized conser 95.9 0.0075 1.6E-07 49.7 3.2 53 109-161 221-273 (303)
74 KOG1002 Nucleotide excision re 95.8 0.0038 8.3E-08 56.5 1.3 48 107-158 534-586 (791)
75 KOG0827 Predicted E3 ubiquitin 95.8 0.0005 1.1E-08 59.8 -4.3 50 109-159 196-246 (465)
76 PF14570 zf-RING_4: RING/Ubox 95.7 0.011 2.3E-07 36.7 2.7 44 112-156 1-46 (48)
77 PF08746 zf-RING-like: RING-li 95.6 0.007 1.5E-07 36.6 1.6 41 112-153 1-43 (43)
78 KOG1813 Predicted E3 ubiquitin 95.2 0.0074 1.6E-07 50.9 0.8 44 110-157 242-285 (313)
79 KOG3268 Predicted E3 ubiquitin 95.1 0.014 3E-07 45.9 2.2 30 130-159 189-229 (234)
80 KOG4739 Uncharacterized protei 95.1 0.0075 1.6E-07 49.5 0.7 43 111-157 5-47 (233)
81 KOG2114 Vacuolar assembly/sort 94.8 0.015 3.2E-07 55.5 1.8 40 110-155 841-880 (933)
82 COG5236 Uncharacterized conser 94.6 0.044 9.5E-07 47.5 4.1 62 93-158 45-108 (493)
83 KOG4692 Predicted E3 ubiquitin 94.3 0.048 1E-06 47.3 3.5 49 107-159 420-468 (489)
84 KOG4275 Predicted E3 ubiquitin 94.0 0.011 2.4E-07 49.8 -0.8 43 109-159 300-343 (350)
85 KOG2034 Vacuolar sorting prote 93.9 0.028 6E-07 53.9 1.4 36 107-144 815-850 (911)
86 PF07800 DUF1644: Protein of u 93.8 0.073 1.6E-06 41.2 3.4 36 109-145 2-47 (162)
87 COG5222 Uncharacterized conser 93.7 0.045 9.7E-07 46.5 2.2 43 110-155 275-318 (427)
88 KOG0309 Conserved WD40 repeat- 93.6 0.037 7.9E-07 52.3 1.7 25 128-152 1045-1069(1081)
89 PF02439 Adeno_E3_CR2: Adenovi 93.6 0.22 4.8E-06 29.1 4.3 30 37-66 5-34 (38)
90 PF04641 Rtf2: Rtf2 RING-finge 93.4 0.1 2.3E-06 43.7 4.0 53 107-160 111-163 (260)
91 KOG1001 Helicase-like transcri 93.2 0.036 7.8E-07 52.5 1.0 47 110-161 455-503 (674)
92 KOG0298 DEAD box-containing he 93.0 0.028 6.1E-07 55.8 0.0 43 110-155 1154-1196(1394)
93 COG5175 MOT2 Transcriptional r 92.9 0.084 1.8E-06 45.6 2.8 53 107-160 12-66 (480)
94 KOG4185 Predicted E3 ubiquitin 92.9 0.08 1.7E-06 45.0 2.6 47 110-157 4-54 (296)
95 KOG1940 Zn-finger protein [Gen 92.4 0.068 1.5E-06 45.1 1.6 45 110-155 159-204 (276)
96 COG5183 SSM4 Protein involved 92.3 0.16 3.5E-06 48.5 3.9 63 106-169 9-77 (1175)
97 KOG3161 Predicted E3 ubiquitin 92.3 0.037 8E-07 51.4 -0.2 43 110-155 12-54 (861)
98 PF10272 Tmpp129: Putative tra 91.5 0.16 3.4E-06 44.6 2.8 28 131-158 311-351 (358)
99 PF14447 Prok-RING_4: Prokaryo 91.0 0.11 2.4E-06 33.0 1.0 44 110-159 8-51 (55)
100 PF01102 Glycophorin_A: Glycop 90.2 0.6 1.3E-05 34.7 4.5 8 30-37 58-65 (122)
101 KOG2932 E3 ubiquitin ligase in 90.1 0.12 2.7E-06 44.1 0.9 44 110-158 91-134 (389)
102 PF15050 SCIMP: SCIMP protein 90.0 0.84 1.8E-05 33.7 4.9 29 36-64 9-37 (133)
103 PF13901 DUF4206: Domain of un 89.4 0.31 6.8E-06 39.3 2.7 40 109-154 152-196 (202)
104 KOG0802 E3 ubiquitin ligase [P 88.6 0.2 4.4E-06 46.3 1.2 50 106-163 476-525 (543)
105 KOG1829 Uncharacterized conser 88.6 0.17 3.6E-06 47.0 0.6 41 109-153 511-556 (580)
106 KOG3002 Zn finger protein [Gen 88.5 0.35 7.6E-06 41.5 2.5 44 110-159 49-92 (299)
107 KOG3053 Uncharacterized conser 88.0 0.25 5.3E-06 41.2 1.2 51 107-158 18-82 (293)
108 smart00249 PHD PHD zinc finger 87.9 0.44 9.6E-06 28.0 2.1 31 111-142 1-31 (47)
109 KOG0269 WD40 repeat-containing 87.9 0.44 9.5E-06 45.3 2.9 41 110-152 780-820 (839)
110 KOG1609 Protein involved in mR 87.9 0.37 7.9E-06 40.9 2.3 52 109-160 78-136 (323)
111 COG5220 TFB3 Cdk activating ki 87.7 0.25 5.4E-06 40.8 1.1 46 109-154 10-60 (314)
112 KOG3800 Predicted E3 ubiquitin 87.3 0.56 1.2E-05 39.7 2.9 47 111-157 2-50 (300)
113 PF01708 Gemini_mov: Geminivir 86.3 1.3 2.8E-05 30.9 3.8 41 19-59 20-60 (91)
114 PF00628 PHD: PHD-finger; Int 86.2 0.47 1E-05 29.1 1.5 44 111-155 1-50 (51)
115 KOG1812 Predicted E3 ubiquitin 85.9 0.3 6.4E-06 43.4 0.7 38 109-147 146-184 (384)
116 KOG4362 Transcriptional regula 85.6 0.21 4.5E-06 47.1 -0.5 47 110-160 22-71 (684)
117 KOG3899 Uncharacterized conser 85.6 0.47 1E-05 40.3 1.6 29 131-159 325-366 (381)
118 KOG2817 Predicted E3 ubiquitin 85.0 0.79 1.7E-05 40.5 2.8 44 109-153 334-380 (394)
119 PF10571 UPF0547: Uncharacteri 84.9 0.53 1.2E-05 25.2 1.1 23 111-135 2-24 (26)
120 KOG2066 Vacuolar assembly/sort 84.1 0.4 8.6E-06 45.7 0.6 43 109-153 784-830 (846)
121 PF08374 Protocadherin: Protoc 84.0 1.7 3.8E-05 35.3 4.2 49 12-62 16-64 (221)
122 PF05290 Baculo_IE-1: Baculovi 83.3 0.94 2E-05 34.1 2.2 51 110-160 81-134 (140)
123 KOG0825 PHD Zn-finger protein 82.8 0.96 2.1E-05 43.4 2.5 57 107-163 94-159 (1134)
124 KOG4718 Non-SMC (structural ma 81.4 0.78 1.7E-05 37.2 1.2 42 110-154 182-223 (235)
125 PF15102 TMEM154: TMEM154 prot 79.6 0.7 1.5E-05 35.3 0.4 8 138-145 128-135 (146)
126 PF03854 zf-P11: P-11 zinc fin 78.9 0.85 1.8E-05 28.1 0.6 30 131-160 18-48 (50)
127 PF07975 C1_4: TFIIH C1-like d 78.0 1.5 3.4E-05 27.4 1.6 42 112-154 2-50 (51)
128 KOG3005 GIY-YIG type nuclease 77.5 1.3 2.8E-05 37.2 1.4 49 110-158 183-243 (276)
129 PHA02657 hypothetical protein; 77.2 4.3 9.3E-05 28.1 3.7 35 23-57 14-48 (95)
130 PF13719 zinc_ribbon_5: zinc-r 75.9 1.7 3.6E-05 25.2 1.2 26 111-136 4-36 (37)
131 PF02891 zf-MIZ: MIZ/SP-RING z 75.5 3.4 7.3E-05 25.6 2.6 39 111-155 4-49 (50)
132 PF14979 TMEM52: Transmembrane 75.5 11 0.00024 28.9 5.8 32 33-64 17-49 (154)
133 PF05393 Hum_adeno_E3A: Human 74.8 4 8.6E-05 28.5 3.0 9 56-64 50-58 (94)
134 PF15050 SCIMP: SCIMP protein 74.3 6.1 0.00013 29.2 4.0 31 38-69 8-38 (133)
135 TIGR00622 ssl1 transcription f 73.8 5.6 0.00012 29.1 3.8 46 109-154 55-110 (112)
136 PF03229 Alpha_GJ: Alphavirus 73.2 15 0.00032 27.0 5.8 33 35-67 84-116 (126)
137 TIGR01478 STEVOR variant surfa 72.5 5.5 0.00012 33.8 3.9 20 45-64 267-286 (295)
138 PF07406 NICE-3: NICE-3 protei 71.8 5.3 0.00011 31.9 3.5 28 40-67 14-41 (186)
139 PTZ00370 STEVOR; Provisional 71.3 5.8 0.00013 33.7 3.8 15 50-64 268-282 (296)
140 PF02009 Rifin_STEVOR: Rifin/s 71.0 7.6 0.00016 33.4 4.6 27 37-64 255-281 (299)
141 PF10717 ODV-E18: Occlusion-de 68.2 16 0.00035 25.2 4.8 19 30-48 19-37 (85)
142 KOG3113 Uncharacterized conser 67.7 5.8 0.00013 33.2 3.0 51 109-161 111-161 (293)
143 KOG1815 Predicted E3 ubiquitin 66.9 3.8 8.2E-05 37.0 2.0 36 108-146 69-104 (444)
144 PHA02650 hypothetical protein; 65.2 16 0.00035 24.9 4.3 13 47-59 59-71 (81)
145 KOG3653 Transforming growth fa 65.1 25 0.00055 32.2 6.8 14 135-148 289-303 (534)
146 KOG1100 Predicted E3 ubiquitin 64.6 3.5 7.6E-05 33.5 1.2 39 112-158 161-200 (207)
147 PF07649 C1_3: C1-like domain; 63.7 6.9 0.00015 21.3 2.0 29 111-140 2-30 (30)
148 KOG1812 Predicted E3 ubiquitin 63.2 4 8.7E-05 36.3 1.4 43 110-153 307-351 (384)
149 PF13314 DUF4083: Domain of un 62.2 30 0.00064 22.2 4.8 16 49-64 18-33 (58)
150 PRK01844 hypothetical protein; 61.7 24 0.00053 23.7 4.6 20 45-64 12-31 (72)
151 PF07010 Endomucin: Endomucin; 61.7 32 0.00069 28.4 6.2 11 54-64 207-217 (259)
152 PF02480 Herpes_gE: Alphaherpe 61.5 2.7 5.8E-05 38.1 0.0 31 34-64 349-379 (439)
153 KOG1094 Discoidin domain recep 61.4 13 0.00028 35.2 4.3 27 38-64 391-417 (807)
154 PF02060 ISK_Channel: Slow vol 61.3 24 0.00052 26.4 5.0 11 24-34 33-43 (129)
155 PF06305 DUF1049: Protein of u 59.6 22 0.00048 22.9 4.2 30 34-63 18-47 (68)
156 KOG3799 Rab3 effector RIM1 and 59.6 2.9 6.4E-05 31.5 -0.1 52 107-166 63-128 (169)
157 KOG4367 Predicted Zn-finger pr 58.9 4.9 0.00011 36.2 1.2 32 109-144 4-35 (699)
158 PF05568 ASFV_J13L: African sw 58.8 20 0.00044 27.5 4.3 6 33-38 27-32 (189)
159 PHA02849 putative transmembran 58.4 30 0.00065 23.6 4.6 14 89-102 61-74 (82)
160 smart00132 LIM Zinc-binding do 58.2 6.7 0.00015 21.8 1.4 37 111-157 1-37 (39)
161 PF13717 zinc_ribbon_4: zinc-r 58.1 5.5 0.00012 22.9 0.9 26 111-136 4-36 (36)
162 PHA02692 hypothetical protein; 57.8 39 0.00084 22.5 5.0 7 36-42 45-51 (70)
163 PF01363 FYVE: FYVE zinc finge 57.6 5.4 0.00012 26.0 1.0 36 109-144 9-44 (69)
164 COG5109 Uncharacterized conser 57.2 8.5 0.00018 33.3 2.3 43 110-153 337-382 (396)
165 PF05961 Chordopox_A13L: Chord 57.1 43 0.00093 22.2 5.1 18 47-64 8-25 (68)
166 PF15176 LRR19-TM: Leucine-ric 56.2 46 0.001 23.8 5.5 25 37-61 17-41 (102)
167 KOG2068 MOT2 transcription fac 55.9 18 0.00039 31.4 4.1 46 110-156 250-296 (327)
168 cd00350 rubredoxin_like Rubred 55.7 7.9 0.00017 21.6 1.3 19 131-155 7-25 (33)
169 PTZ00370 STEVOR; Provisional 55.5 17 0.00036 31.0 3.8 35 31-65 252-286 (296)
170 TIGR01478 STEVOR variant surfa 55.3 17 0.00037 31.0 3.7 35 31-65 256-290 (295)
171 PF00412 LIM: LIM domain; Int 55.2 5.7 0.00012 24.6 0.8 40 112-161 1-40 (58)
172 PF15330 SIT: SHP2-interacting 54.6 22 0.00048 25.7 3.8 19 40-58 3-21 (107)
173 KOG1538 Uncharacterized conser 54.1 6.1 0.00013 37.6 1.0 37 122-158 1041-1077(1081)
174 cd00065 FYVE FYVE domain; Zinc 53.7 12 0.00026 23.2 2.1 36 110-145 3-38 (57)
175 PRK00523 hypothetical protein; 53.4 41 0.00089 22.6 4.6 18 47-64 15-32 (72)
176 KOG2807 RNA polymerase II tran 52.6 16 0.00035 31.7 3.3 69 86-155 306-375 (378)
177 PF06679 DUF1180: Protein of u 52.3 50 0.0011 25.8 5.7 19 43-61 99-117 (163)
178 COG3763 Uncharacterized protei 52.1 45 0.00097 22.3 4.6 24 41-64 8-31 (71)
179 PF15145 DUF4577: Domain of un 52.0 14 0.0003 27.0 2.3 15 80-94 98-112 (128)
180 PF05454 DAG1: Dystroglycan (D 50.9 5.1 0.00011 34.2 0.0 6 94-99 191-196 (290)
181 PF06906 DUF1272: Protein of u 50.1 31 0.00068 22.0 3.5 49 110-161 6-55 (57)
182 KOG3039 Uncharacterized conser 49.9 11 0.00023 31.6 1.7 34 108-145 42-75 (303)
183 smart00064 FYVE Protein presen 49.5 18 0.00038 23.4 2.5 37 109-145 10-46 (68)
184 PF14311 DUF4379: Domain of un 49.4 13 0.00028 23.2 1.7 25 128-153 31-55 (55)
185 PHA02935 Hypothetical protein; 49.3 55 0.0012 26.7 5.7 33 24-56 301-333 (349)
186 PF06844 DUF1244: Protein of u 49.3 11 0.00023 24.9 1.3 12 134-145 11-22 (68)
187 PF14169 YdjO: Cold-inducible 49.0 8.5 0.00018 24.8 0.8 16 147-162 39-54 (59)
188 KOG2041 WD40 repeat protein [G 48.8 14 0.0003 35.7 2.4 49 105-157 1127-1184(1189)
189 PF15179 Myc_target_1: Myc tar 48.8 53 0.0012 26.2 5.3 13 189-201 182-194 (197)
190 PF05283 MGC-24: Multi-glycosy 48.4 55 0.0012 26.2 5.5 26 30-55 155-180 (186)
191 PF14914 LRRC37AB_C: LRRC37A/B 48.2 35 0.00076 26.2 4.1 33 32-64 116-148 (154)
192 KOG4323 Polycomb-like PHD Zn-f 47.5 11 0.00024 34.3 1.5 48 109-156 168-224 (464)
193 PF05393 Hum_adeno_E3A: Human 46.9 87 0.0019 21.9 5.5 28 37-64 35-63 (94)
194 PF01299 Lamp: Lysosome-associ 45.4 16 0.00035 31.2 2.3 12 39-50 275-286 (306)
195 TIGR01477 RIFIN variant surfac 45.3 27 0.00058 30.7 3.5 23 41-64 313-335 (353)
196 PF12669 P12: Virus attachment 45.3 26 0.00056 22.4 2.6 6 59-64 18-23 (58)
197 PTZ00046 rifin; Provisional 44.7 25 0.00054 31.0 3.3 24 40-64 317-340 (358)
198 PF07204 Orthoreo_P10: Orthore 44.0 28 0.0006 24.7 2.8 18 47-64 50-67 (98)
199 PF04423 Rad50_zn_hook: Rad50 44.0 6.7 0.00014 24.5 -0.3 13 149-161 22-34 (54)
200 PF12877 DUF3827: Domain of un 44.0 27 0.00058 33.1 3.5 28 37-64 269-296 (684)
201 KOG1815 Predicted E3 ubiquitin 43.6 7.3 0.00016 35.2 -0.2 36 110-146 227-267 (444)
202 KOG2979 Protein involved in DN 43.5 14 0.00031 30.9 1.5 42 109-153 176-219 (262)
203 KOG1729 FYVE finger containing 43.4 4.1 8.8E-05 34.8 -1.7 38 110-148 215-252 (288)
204 PF04689 S1FA: DNA binding pro 43.3 24 0.00053 23.1 2.2 21 30-50 7-27 (69)
205 PRK13454 F0F1 ATP synthase sub 43.1 67 0.0015 25.2 5.3 16 21-36 13-28 (181)
206 PF11057 Cortexin: Cortexin of 43.1 57 0.0012 22.1 4.1 7 56-62 44-50 (81)
207 PHA03049 IMV membrane protein; 42.9 81 0.0018 20.8 4.6 20 45-64 6-25 (68)
208 PF15298 AJAP1_PANP_C: AJAP1/P 42.3 18 0.00039 29.1 1.9 34 31-64 94-127 (205)
209 KOG4443 Putative transcription 41.9 15 0.00032 34.8 1.5 48 110-157 19-72 (694)
210 smart00647 IBR In Between Ring 41.6 7.9 0.00017 24.4 -0.2 21 123-143 38-58 (64)
211 PLN02189 cellulose synthase 41.1 26 0.00057 35.1 3.1 50 109-158 34-87 (1040)
212 PF10661 EssA: WXG100 protein 41.0 34 0.00074 26.1 3.2 8 52-59 134-141 (145)
213 PF05568 ASFV_J13L: African sw 40.6 68 0.0015 24.7 4.6 27 38-64 29-55 (189)
214 PF05510 Sarcoglycan_2: Sarcog 40.6 60 0.0013 29.0 5.1 15 44-58 293-307 (386)
215 PF10577 UPF0560: Uncharacteri 40.4 68 0.0015 31.3 5.6 26 38-63 273-298 (807)
216 PF04216 FdhE: Protein involve 40.1 3.3 7.2E-05 35.1 -2.8 46 109-155 172-219 (290)
217 KOG3842 Adaptor protein Pellin 40.1 37 0.00081 29.5 3.5 53 107-160 339-416 (429)
218 PF13832 zf-HC5HC2H_2: PHD-zin 39.9 19 0.00042 25.5 1.6 34 109-143 55-88 (110)
219 PF03107 C1_2: C1 domain; Int 39.4 20 0.00043 19.5 1.2 28 111-139 2-29 (30)
220 PRK13415 flagella biosynthesis 38.5 1.3E+02 0.0028 24.7 6.2 8 57-64 85-92 (219)
221 PF08374 Protocadherin: Protoc 38.4 20 0.00043 29.3 1.6 39 29-67 28-66 (221)
222 PF07191 zinc-ribbons_6: zinc- 38.2 11 0.00023 25.3 -0.0 40 110-158 2-41 (70)
223 PF04971 Lysis_S: Lysis protei 38.1 52 0.0011 21.8 3.2 9 40-48 35-43 (68)
224 PF07282 OrfB_Zn_ribbon: Putat 37.7 48 0.001 21.3 3.1 36 108-143 27-64 (69)
225 PRK11486 flagellar biosynthesi 37.2 1.1E+02 0.0024 22.8 5.3 16 50-65 27-42 (124)
226 PHA03099 epidermal growth fact 37.0 40 0.00087 25.3 2.9 13 52-64 117-129 (139)
227 PF13771 zf-HC5HC2H: PHD-like 36.9 23 0.00051 24.0 1.6 32 110-142 37-68 (90)
228 PF06937 EURL: EURL protein; 36.9 30 0.00065 29.2 2.5 21 134-154 56-77 (285)
229 KOG2052 Activin A type IB rece 36.7 77 0.0017 29.0 5.1 18 35-52 132-149 (513)
230 KOG1512 PHD Zn-finger protein 36.3 15 0.00034 31.3 0.7 32 110-142 315-346 (381)
231 PF01299 Lamp: Lysosome-associ 36.0 24 0.00053 30.1 1.9 28 38-65 271-298 (306)
232 PHA02681 ORF089 virion membran 35.6 1.3E+02 0.0029 20.8 5.0 20 79-98 45-64 (92)
233 PF11770 GAPT: GRB2-binding ad 35.6 11 0.00023 29.0 -0.3 23 36-58 9-31 (158)
234 PHA03240 envelope glycoprotein 35.5 59 0.0013 26.7 3.8 7 38-44 215-221 (258)
235 PF06750 DiS_P_DiS: Bacterial 35.5 22 0.00047 24.9 1.3 38 110-160 34-71 (92)
236 PF06024 DUF912: Nucleopolyhed 35.1 16 0.00034 26.1 0.5 22 31-52 59-80 (101)
237 PF14316 DUF4381: Domain of un 35.1 54 0.0012 24.7 3.5 24 40-63 20-43 (146)
238 PF05502 Dynactin_p62: Dynacti 35.0 34 0.00074 31.4 2.7 40 110-163 27-68 (483)
239 KOG1245 Chromatin remodeling c 34.5 14 0.0003 38.3 0.2 48 109-157 1108-1159(1404)
240 PF04834 Adeno_E3_14_5: Early 34.4 70 0.0015 22.7 3.6 22 27-48 14-35 (97)
241 PRK05978 hypothetical protein; 34.3 24 0.00051 27.2 1.4 28 128-160 36-65 (148)
242 PF03119 DNA_ligase_ZBD: NAD-d 34.1 19 0.00042 19.4 0.6 14 149-162 1-14 (28)
243 PF07010 Endomucin: Endomucin; 33.9 2E+02 0.0043 23.9 6.6 29 39-67 189-217 (259)
244 PRK11088 rrmA 23S rRNA methylt 33.4 29 0.00063 28.9 1.9 25 110-135 3-27 (272)
245 PF10497 zf-4CXXC_R1: Zinc-fin 33.2 76 0.0017 22.8 3.8 24 132-155 37-69 (105)
246 PF02318 FYVE_2: FYVE-type zin 33.2 30 0.00066 25.2 1.8 46 108-155 53-102 (118)
247 PF07245 Phlebovirus_G2: Phleb 32.9 75 0.0016 29.4 4.6 22 39-60 472-493 (507)
248 PF11027 DUF2615: Protein of u 32.8 73 0.0016 22.9 3.6 12 34-45 53-64 (103)
249 PF05191 ADK_lid: Adenylate ki 32.2 22 0.00048 20.4 0.7 31 127-159 3-33 (36)
250 PF14654 Epiglycanin_C: Mucin, 32.1 1.8E+02 0.004 20.7 5.4 31 30-61 12-42 (106)
251 PF07406 NICE-3: NICE-3 protei 31.9 82 0.0018 25.1 4.1 36 31-66 9-44 (186)
252 PLN02436 cellulose synthase A 31.1 48 0.001 33.5 3.1 50 109-158 36-89 (1094)
253 smart00531 TFIIE Transcription 31.1 50 0.0011 25.0 2.7 14 148-161 124-137 (147)
254 COG3190 FliO Flagellar biogene 31.0 1.6E+02 0.0034 22.4 5.3 20 46-65 29-48 (137)
255 PF15065 NCU-G1: Lysosomal tra 30.8 25 0.00055 30.9 1.2 34 31-64 313-346 (350)
256 PF07213 DAP10: DAP10 membrane 30.8 1.8E+02 0.0039 19.9 5.2 26 39-64 35-60 (79)
257 TIGR01191 ccmC heme exporter p 30.7 1.8E+02 0.0039 23.1 5.9 41 15-58 138-178 (184)
258 PF15353 HECA: Headcase protei 30.6 31 0.00067 25.0 1.4 14 131-144 40-53 (107)
259 KOG2071 mRNA cleavage and poly 30.6 26 0.00056 32.8 1.2 35 107-143 511-556 (579)
260 COG1545 Predicted nucleic-acid 30.6 30 0.00065 26.2 1.4 23 127-157 31-53 (140)
261 PLN02195 cellulose synthase A 30.5 59 0.0013 32.5 3.7 50 108-158 5-59 (977)
262 PF14569 zf-UDP: Zinc-binding 30.4 81 0.0017 21.6 3.3 50 109-158 9-62 (80)
263 COG5627 MMS21 DNA repair prote 30.2 27 0.00059 29.0 1.2 41 109-152 189-231 (275)
264 PRK09702 PTS system arbutin-sp 30.1 69 0.0015 24.9 3.4 24 43-66 12-35 (161)
265 PTZ00234 variable surface prot 30.1 1E+02 0.0022 28.0 4.9 23 33-55 359-383 (433)
266 PF06143 Baculo_11_kDa: Baculo 29.9 66 0.0014 22.3 2.9 24 31-54 30-53 (84)
267 PF12191 stn_TNFRSF12A: Tumour 29.9 22 0.00048 26.5 0.6 25 33-57 75-99 (129)
268 PLN02638 cellulose synthase A 29.9 52 0.0011 33.2 3.2 49 109-158 17-70 (1079)
269 PF03672 UPF0154: Uncharacteri 29.8 85 0.0019 20.6 3.2 9 56-64 16-24 (64)
270 PRK11827 hypothetical protein; 29.6 19 0.0004 23.3 0.1 20 141-160 2-21 (60)
271 TIGR00686 phnA alkylphosphonat 29.0 32 0.00069 25.0 1.2 25 110-134 3-28 (109)
272 PF03911 Sec61_beta: Sec61beta 29.0 81 0.0018 18.6 2.8 25 27-51 12-36 (41)
273 PF07438 DUF1514: Protein of u 29.0 58 0.0012 21.4 2.3 11 38-48 2-12 (66)
274 KOG2678 Predicted membrane pro 28.0 1E+02 0.0022 25.4 4.1 8 51-58 230-237 (244)
275 PF11446 DUF2897: Protein of u 27.7 1E+02 0.0022 19.5 3.3 8 40-47 7-14 (55)
276 PF09723 Zn-ribbon_8: Zinc rib 27.6 12 0.00027 22.0 -0.9 25 130-155 10-34 (42)
277 PF15069 FAM163: FAM163 family 27.4 33 0.00071 26.2 1.1 6 148-153 92-97 (143)
278 COG5415 Predicted integral mem 27.3 24 0.00053 28.7 0.4 27 131-157 195-224 (251)
279 KOG3637 Vitronectin receptor, 27.2 51 0.0011 33.3 2.7 28 34-61 976-1003(1030)
280 cd01121 Sms Sms (bacterial rad 27.0 43 0.00093 29.6 1.9 22 130-159 5-28 (372)
281 PF07245 Phlebovirus_G2: Phleb 26.9 75 0.0016 29.4 3.5 21 41-61 471-491 (507)
282 PF04639 Baculo_E56: Baculovir 26.9 35 0.00076 29.1 1.3 13 30-42 274-286 (305)
283 PF06679 DUF1180: Protein of u 26.8 2.1E+02 0.0044 22.4 5.5 25 39-63 98-122 (163)
284 TIGR01562 FdhE formate dehydro 26.6 21 0.00045 30.8 -0.1 46 109-155 184-232 (305)
285 PF11169 DUF2956: Protein of u 26.4 85 0.0018 22.5 3.0 22 28-49 79-100 (103)
286 COG3492 Uncharacterized protei 26.3 33 0.00072 24.1 0.9 13 134-146 42-54 (104)
287 PF15431 TMEM190: Transmembran 26.1 1.4E+02 0.0031 21.8 4.1 30 35-64 58-87 (134)
288 PF09943 DUF2175: Uncharacteri 26.1 51 0.0011 23.7 1.8 33 111-145 4-36 (101)
289 PF15048 OSTbeta: Organic solu 25.8 1.1E+02 0.0024 22.8 3.6 14 56-69 53-66 (125)
290 COG3364 Zn-ribbon containing p 25.5 43 0.00094 24.1 1.4 24 130-157 7-30 (112)
291 PF15446 zf-PHD-like: PHD/FYVE 25.2 42 0.0009 26.4 1.3 31 111-142 1-34 (175)
292 PF14584 DUF4446: Protein of u 25.0 1.2E+02 0.0026 23.3 3.9 28 93-121 82-109 (151)
293 PF09835 DUF2062: Uncharacteri 24.5 1.1E+02 0.0023 23.1 3.6 28 37-64 118-145 (154)
294 COG0675 Transposase and inacti 24.5 60 0.0013 27.2 2.4 30 107-139 307-336 (364)
295 PF13131 DUF3951: Protein of u 24.5 1.7E+02 0.0038 18.2 3.7 19 39-57 4-22 (53)
296 PF14991 MLANA: Protein melan- 24.5 12 0.00027 27.4 -1.6 6 59-64 45-50 (118)
297 PTZ00208 65 kDa invariant surf 24.2 46 0.00099 29.8 1.6 27 38-64 387-413 (436)
298 PLN02915 cellulose synthase A 24.2 98 0.0021 31.3 3.9 51 108-158 14-68 (1044)
299 KOG0824 Predicted E3 ubiquitin 24.1 27 0.00058 30.1 0.1 49 107-158 103-151 (324)
300 PRK10220 hypothetical protein; 24.0 57 0.0012 23.8 1.7 25 110-134 4-29 (111)
301 PF04710 Pellino: Pellino; In 23.8 26 0.00057 31.2 0.0 50 109-159 328-402 (416)
302 PF05715 zf-piccolo: Piccolo Z 23.6 48 0.001 21.4 1.1 11 147-157 2-12 (61)
303 PF01708 Gemini_mov: Geminivir 23.3 1.6E+02 0.0035 20.6 3.8 24 40-63 37-60 (91)
304 PLN02248 cellulose synthase-li 23.2 1.1E+02 0.0024 31.2 4.0 34 125-159 145-178 (1135)
305 PF09835 DUF2062: Uncharacteri 23.1 1.6E+02 0.0035 22.1 4.3 18 47-64 132-149 (154)
306 KOG4080 Mitochondrial ribosoma 23.1 31 0.00068 27.0 0.3 10 124-133 92-101 (176)
307 smart00109 C1 Protein kinase C 22.9 61 0.0013 18.8 1.5 32 110-142 12-44 (49)
308 PF11120 DUF2636: Protein of u 22.9 2E+02 0.0044 18.7 4.0 6 42-47 9-14 (62)
309 PF05399 EVI2A: Ectropic viral 22.6 2.3E+02 0.005 23.2 5.1 7 38-44 128-134 (227)
310 COG4847 Uncharacterized protei 22.6 82 0.0018 22.4 2.3 35 110-146 7-41 (103)
311 PHA03286 envelope glycoprotein 22.5 2.8E+02 0.0061 25.4 6.1 20 45-64 398-417 (492)
312 COG4219 MecR1 Antirepressor re 22.4 3.9E+02 0.0085 23.4 6.8 13 132-144 199-211 (337)
313 PRK03564 formate dehydrogenase 22.0 73 0.0016 27.6 2.3 47 108-155 186-234 (309)
314 KOG4577 Transcription factor L 21.8 31 0.00066 29.6 0.0 34 109-144 92-125 (383)
315 PHA03164 hypothetical protein; 21.7 88 0.0019 21.3 2.2 17 38-54 60-76 (88)
316 COG5574 PEX10 RING-finger-cont 21.7 75 0.0016 26.8 2.3 38 108-145 94-132 (271)
317 PF00130 C1_1: Phorbol esters/ 21.7 61 0.0013 19.5 1.4 32 110-142 12-45 (53)
318 PF05605 zf-Di19: Drought indu 21.6 11 0.00024 23.4 -2.0 12 110-121 3-14 (54)
319 PF11346 DUF3149: Protein of u 21.6 1.9E+02 0.0042 17.2 4.2 9 56-64 28-36 (42)
320 KOG3653 Transforming growth fa 21.5 3E+02 0.0064 25.6 6.1 36 22-57 140-175 (534)
321 PRK10927 essential cell divisi 21.4 52 0.0011 28.5 1.3 21 30-50 29-49 (319)
322 PF03229 Alpha_GJ: Alphavirus 21.4 2.9E+02 0.0062 20.4 4.9 12 29-40 75-86 (126)
323 PF05434 Tmemb_9: TMEM9; Inte 21.3 71 0.0015 24.6 1.9 26 39-64 60-85 (149)
324 PF11660 DUF3262: Protein of u 21.3 2.7E+02 0.0058 18.7 4.6 37 30-66 12-48 (76)
325 KOG2857 Predicted MYND Zn-fing 21.0 57 0.0012 24.9 1.3 39 110-155 6-44 (157)
326 PF08274 PhnA_Zn_Ribbon: PhnA 20.8 39 0.00084 18.6 0.3 24 111-134 4-28 (30)
327 PF02038 ATP1G1_PLM_MAT8: ATP1 20.6 1.6E+02 0.0034 18.4 3.0 27 32-58 8-34 (50)
328 PHA03163 hypothetical protein; 20.6 2.7E+02 0.0059 19.5 4.5 12 16-27 30-41 (92)
329 PLN02400 cellulose synthase 20.4 78 0.0017 32.0 2.4 49 109-158 36-89 (1085)
330 PF14353 CpXC: CpXC protein 20.3 86 0.0019 22.9 2.2 11 111-121 3-13 (128)
331 PF06676 DUF1178: Protein of u 20.2 49 0.0011 25.4 0.8 23 131-158 10-43 (148)
332 PF07227 DUF1423: Protein of u 20.2 72 0.0016 28.9 2.0 32 111-143 130-164 (446)
333 KOG3579 Predicted E3 ubiquitin 20.0 56 0.0012 28.0 1.2 37 110-147 269-306 (352)
334 KOG4218 Nuclear hormone recept 20.0 49 0.0011 29.1 0.9 14 107-120 13-26 (475)
335 PF14205 Cys_rich_KTR: Cystein 20.0 68 0.0015 20.3 1.3 10 149-158 30-39 (55)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.4e-21 Score=164.46 Aligned_cols=81 Identities=33% Similarity=0.811 Sum_probs=68.4
Q ss_pred hhhcCCCHHHHhhcCeEEccCCCCCCCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCC-Cccccccccc
Q 042698 81 LAKTGIKKKALKAFTIVKYSGELKLPGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSS-CPKCRHCLIE 159 (203)
Q Consensus 81 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~-CP~CR~~l~~ 159 (203)
.....+.++.++++|...|......... .+|+||||+|+++|+++.|| |+|.||..||+.||..+++ ||+||+++..
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 3466788999999999999886554433 68999999999999999999 9999999999999977654 9999998775
Q ss_pred cccc
Q 042698 160 SCKK 163 (203)
Q Consensus 160 ~~~~ 163 (203)
....
T Consensus 280 ~~~~ 283 (348)
T KOG4628|consen 280 DSGS 283 (348)
T ss_pred CCCC
Confidence 5433
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.65 E-value=5.9e-17 Score=99.68 Aligned_cols=44 Identities=57% Similarity=1.300 Sum_probs=40.4
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCR 154 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 154 (203)
++|+||+++|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999999999999 999999999999999999999998
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.44 E-value=8.4e-14 Score=94.77 Aligned_cols=45 Identities=40% Similarity=1.004 Sum_probs=35.7
Q ss_pred CCcCccccCcccCC----------CceeecCCCCccccHhhHHHHHhcCCCCcccc
Q 042698 109 DNECVICLSDFAPG----------ERVRILPKCNHGFHVRCIDKWLRSNSSCPKCR 154 (203)
Q Consensus 109 ~~~CaICl~~~~~~----------~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 154 (203)
++.|+||++++.+. -.+...+ |||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999422 2344455 999999999999999999999998
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.43 E-value=1.2e-13 Score=113.43 Aligned_cols=75 Identities=36% Similarity=0.619 Sum_probs=55.9
Q ss_pred cCCCHHHHhhcCeEEccCCCC-CCCCCCcCccccCcccCCC----ceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 84 TGIKKKALKAFTIVKYSGELK-LPGLDNECVICLSDFAPGE----RVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 84 ~~~~~~~~~~lp~~~~~~~~~-~~~~~~~CaICl~~~~~~~----~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
.+..+..++.+|.+....... ....+.+|+||++++..++ .+.+++.|+|.||..||..|++.+.+||+||..+.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 455677788888886553221 2234578999999987653 12344459999999999999999999999999776
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1e-13 Score=115.29 Aligned_cols=51 Identities=47% Similarity=1.138 Sum_probs=46.6
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHh-cCCCCccccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLIE 159 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~ 159 (203)
.+.+|+|||+.|..+|+++++| |+|.||..|++.|+. .+..||+||..+++
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3478999999999999999999 999999999999997 56679999999876
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.1e-12 Score=109.13 Aligned_cols=55 Identities=31% Similarity=0.826 Sum_probs=44.8
Q ss_pred CCCCCcCccccCcccCCC----------ceeecCCCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 106 PGLDNECVICLSDFAPGE----------RVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 106 ~~~~~~CaICl~~~~~~~----------~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
..+|..|.||+|++-+.+ +-+.+| |||+||-+|+..|+.++++||+||.++.-..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~ 348 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQ 348 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcccccc
Confidence 346789999999954332 346788 9999999999999999999999999965443
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.5e-11 Score=97.11 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=53.1
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC---CCcccccccccccccccCCCCCCCCC------CC
Q 042698 106 PGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS---SCPKCRHCLIESCKKIEGSTQPSSLS------GI 176 (203)
Q Consensus 106 ~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~l~~~~~~~~~~~~~~~~~------~~ 176 (203)
.....+|-||||.-+++ |. +. |||.||+.||.+|++.+. .||+||..+....--..++......+ -+
T Consensus 44 ~~~~FdCNICLd~akdP--Vv-Tl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~~~~~~~~~vP 119 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP--VV-TL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSKKPSDPRKKDVP 119 (230)
T ss_pred CCCceeeeeeccccCCC--EE-ee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCCCCCCcccccCC
Confidence 35567899999996654 44 43 999999999999997543 59999998887765555555332222 35
Q ss_pred CCCcccccc
Q 042698 177 STPVQETVV 185 (203)
Q Consensus 177 ~~~~~~~~~ 185 (203)
.+|++...-
T Consensus 120 ~RP~~~R~e 128 (230)
T KOG0823|consen 120 PRPAGQRYE 128 (230)
T ss_pred CCCCCcccc
Confidence 556554443
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.17 E-value=7.3e-11 Score=93.59 Aligned_cols=51 Identities=33% Similarity=0.722 Sum_probs=40.9
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc----------------CCCCccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS----------------NSSCPKCRHCLIESC 161 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----------------~~~CP~CR~~l~~~~ 161 (203)
+.+.+|+||++.+++. .+++ |||.||+.||..|+.. +..||+||..+....
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 3457899999998764 4566 9999999999999842 246999999887644
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.6e-11 Score=101.83 Aligned_cols=52 Identities=31% Similarity=0.722 Sum_probs=44.9
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 106 PGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 106 ~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
......|.+||+..+++ ..+| |||+||+.||..|...+..||+||....+..
T Consensus 236 ~~a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 34557899999998775 6777 9999999999999999999999999887653
No 10
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.3e-11 Score=110.58 Aligned_cols=54 Identities=35% Similarity=0.925 Sum_probs=46.4
Q ss_pred CCCcCccccCcccCCCc--eeecCCCCccccHhhHHHHHhcCCCCcccccccccccc
Q 042698 108 LDNECVICLSDFAPGER--VRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESCK 162 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~--v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 162 (203)
.+..|+||+|++...+. .+.++ |+|+||..|+..|++++++||+||..+.....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL 345 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence 46789999999988655 67788 99999999999999999999999995555443
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.13 E-value=5.3e-11 Score=72.14 Aligned_cols=44 Identities=55% Similarity=1.215 Sum_probs=36.7
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHhc-CCCCccccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-NSSCPKCRHCL 157 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l 157 (203)
+|+||++.+ .+.+...+ |+|.||..|+..|++. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 33455666 9999999999999987 67799999764
No 12
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.11 E-value=5e-11 Score=82.37 Aligned_cols=52 Identities=40% Similarity=0.894 Sum_probs=39.2
Q ss_pred CCCcCccccCccc--------CCCc-eeecCCCCccccHhhHHHHHhc---CCCCccccccccc
Q 042698 108 LDNECVICLSDFA--------PGER-VRILPKCNHGFHVRCIDKWLRS---NSSCPKCRHCLIE 159 (203)
Q Consensus 108 ~~~~CaICl~~~~--------~~~~-v~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~l~~ 159 (203)
.++.|.||+..|. +++. -.+...|+|.||..||..|+.. +..||+||+...-
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3678999999987 2222 2234459999999999999975 4579999997653
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.10 E-value=8.3e-11 Score=74.07 Aligned_cols=46 Identities=37% Similarity=0.880 Sum_probs=38.9
Q ss_pred CCcCccccCcccCCCceeecCCCCcc-ccHhhHHHHHhcCCCCcccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
+..|.||++.... +..+| |||. |+..|+..|++.+..||+||+.+.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4679999998654 67778 9999 999999999999999999999875
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.09 E-value=8.4e-11 Score=70.24 Aligned_cols=39 Identities=44% Similarity=1.100 Sum_probs=32.9
Q ss_pred CccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccc
Q 042698 112 CVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKC 153 (203)
Q Consensus 112 CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 153 (203)
|+||++.+.+ .+..++ |||.|+.+|+..|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999877 456777 99999999999999998899998
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.6e-10 Score=89.80 Aligned_cols=54 Identities=28% Similarity=0.600 Sum_probs=44.2
Q ss_pred CCCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 105 LPGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 105 ~~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
.+..-..|+|||+.+.+...+ .+. |||+|++.||..-++....||+||..|..+
T Consensus 127 ~~~~~~~CPiCl~~~sek~~v-sTk-CGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPV-STK-CGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccccCCCceecchhhcccc-ccc-cchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 344457899999999876433 244 999999999999999999999999988765
No 16
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.98 E-value=2.5e-10 Score=77.14 Aligned_cols=51 Identities=33% Similarity=0.840 Sum_probs=38.7
Q ss_pred CcCccccCccc-----------CCCce-eecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 110 NECVICLSDFA-----------PGERV-RILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 110 ~~CaICl~~~~-----------~~~~v-~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
+.|+||...|. ++++. ..-..|+|.||..||.+||..+..||++|+...-.
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 56888877763 33322 23334999999999999999999999999877644
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.94 E-value=6e-10 Score=89.62 Aligned_cols=51 Identities=33% Similarity=0.775 Sum_probs=38.3
Q ss_pred CCCcCccccCcccCC-----CceeecCCCCccccHhhHHHHHhcC------CCCcccccccc
Q 042698 108 LDNECVICLSDFAPG-----ERVRILPKCNHGFHVRCIDKWLRSN------SSCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~~-----~~v~~l~~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~l~ 158 (203)
.+.+|+||+|..-+. ..-.+++.|+|.||..||..|.+.+ .+||+||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 347899999986432 1223565699999999999999753 35999998654
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.90 E-value=1.3e-09 Score=66.77 Aligned_cols=44 Identities=32% Similarity=0.838 Sum_probs=37.9
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
.|.||+++|.+.....+++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666778887 9999999999998856678999984
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.85 E-value=1.7e-09 Score=65.05 Aligned_cols=39 Identities=46% Similarity=1.154 Sum_probs=33.2
Q ss_pred CccccCcccCCCceeecCCCCccccHhhHHHHHh--cCCCCccc
Q 042698 112 CVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR--SNSSCPKC 153 (203)
Q Consensus 112 CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~C 153 (203)
|+||++.+... +..++ |+|.|+..||..|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998775 35777 999999999999998 45569998
No 20
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.1e-09 Score=93.09 Aligned_cols=50 Identities=36% Similarity=0.856 Sum_probs=38.9
Q ss_pred CCcCccccCcccC---C-------Cc----eeecCCCCccccHhhHHHHHh-cCCCCccccccccc
Q 042698 109 DNECVICLSDFAP---G-------ER----VRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~---~-------~~----v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~ 159 (203)
...|+||+.++.- + +. -..+| |+|+||..|+..|+. .+-.||+||..+++
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3579999998751 1 11 23467 999999999999998 55589999998865
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.82 E-value=3.7e-09 Score=61.68 Aligned_cols=38 Identities=47% Similarity=1.232 Sum_probs=31.8
Q ss_pred CccccCcccCCCceeecCCCCccccHhhHHHHHh-cCCCCccc
Q 042698 112 CVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-SNSSCPKC 153 (203)
Q Consensus 112 CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~C 153 (203)
|+||++.. .....++ |+|.||..|+..|++ .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999883 3456777 999999999999998 56679987
No 22
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.79 E-value=3.5e-09 Score=64.24 Aligned_cols=38 Identities=39% Similarity=0.974 Sum_probs=29.2
Q ss_pred CccccCcccCCCceeecCCCCccccHhhHHHHHhcC----CCCccc
Q 042698 112 CVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN----SSCPKC 153 (203)
Q Consensus 112 CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~C 153 (203)
|+||++-|.++ ..++ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999886 6677 99999999999999653 359987
No 23
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.1e-09 Score=73.41 Aligned_cols=50 Identities=40% Similarity=0.907 Sum_probs=37.4
Q ss_pred CCcCccccCccc--------CCC-ceeecCCCCccccHhhHHHHHhcC---CCCcccccccc
Q 042698 109 DNECVICLSDFA--------PGE-RVRILPKCNHGFHVRCIDKWLRSN---SSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~--------~~~-~v~~l~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l~ 158 (203)
+++|.||.-+|. ++| --.++..|.|.||..||..|+..+ ..||+||+...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 458999999986 223 222344599999999999999643 45999998764
No 24
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.72 E-value=1.6e-08 Score=66.26 Aligned_cols=45 Identities=31% Similarity=0.482 Sum_probs=39.2
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|+||++.+.++ .+++ |||+|...||..|++.+..||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 3699999999875 4566 9999999999999998889999998774
No 25
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.9e-09 Score=73.87 Aligned_cols=49 Identities=31% Similarity=0.780 Sum_probs=37.5
Q ss_pred CcCccccCccc-------------CCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFA-------------PGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~-------------~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
+.|+||...+- .++-...-..|+|.||..||.+||+++..||+|.++..
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 57999987752 12223334459999999999999999999999977644
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.5e-09 Score=85.26 Aligned_cols=51 Identities=29% Similarity=0.650 Sum_probs=41.6
Q ss_pred CCCCcCccccCcccCCC-------ceeecCCCCccccHhhHHHHH--hcCCCCcccccccc
Q 042698 107 GLDNECVICLSDFAPGE-------RVRILPKCNHGFHVRCIDKWL--RSNSSCPKCRHCLI 158 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~-------~v~~l~~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~l~ 158 (203)
.++..|+||-..+.... ....+. |+|+||..||.-|- .++++||.|+..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 45678999998876543 566787 99999999999995 57789999987654
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=2.9e-08 Score=87.30 Aligned_cols=48 Identities=29% Similarity=0.590 Sum_probs=40.9
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
+....|+||++.|... .+++ |+|.||..||..|+.....||+||..+.
T Consensus 24 e~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred ccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 3456899999999765 3567 9999999999999998888999998665
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.6e-08 Score=82.01 Aligned_cols=51 Identities=27% Similarity=0.659 Sum_probs=41.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHH-HHhcCCC-Cccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDK-WLRSNSS-CPKCRHCLIESC 161 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~-Wl~~~~~-CP~CR~~l~~~~ 161 (203)
..+..|+||++..... ..++ |||+|+..||.. |=+++.. ||+||+...+..
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4467899999997664 5566 999999999999 8766554 999999887664
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.46 E-value=1.6e-07 Score=58.81 Aligned_cols=42 Identities=24% Similarity=0.772 Sum_probs=31.7
Q ss_pred cCccccCcccCCCceeecCCCC-----ccccHhhHHHHHhcC--CCCcccc
Q 042698 111 ECVICLSDFAPGERVRILPKCN-----HGFHVRCIDKWLRSN--SSCPKCR 154 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR 154 (203)
.|.||++...+ +...+.| |. |.+|..|+..|+..+ .+||+|+
T Consensus 1 ~CrIC~~~~~~-~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDE-GDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCC-CCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999994334 3444677 74 999999999999544 4799995
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.2e-07 Score=84.40 Aligned_cols=49 Identities=31% Similarity=0.558 Sum_probs=38.9
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC-----CCCccccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN-----SSCPKCRHCLIESC 161 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~~l~~~~ 161 (203)
+..|+|||++...+ ..+. |||+||..||..++... ..||+||..|...+
T Consensus 186 ~~~CPICL~~~~~p---~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcc---cccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 57899999996654 2333 99999999999998543 46999999888744
No 31
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.38 E-value=6.5e-08 Score=91.15 Aligned_cols=52 Identities=35% Similarity=0.789 Sum_probs=39.5
Q ss_pred CCCCcCccccCcccC-CC--ceeecCCCCccccHhhHHHHHhcC--CCCcccccccc
Q 042698 107 GLDNECVICLSDFAP-GE--RVRILPKCNHGFHVRCIDKWLRSN--SSCPKCRHCLI 158 (203)
Q Consensus 107 ~~~~~CaICl~~~~~-~~--~v~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~ 158 (203)
...++||||..-... +. .-..+++|+|-||..|+..|++.. .+||+||.+++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 446789999887651 11 224566799999999999999754 46999998775
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.35 E-value=3.7e-07 Score=55.54 Aligned_cols=34 Identities=35% Similarity=0.806 Sum_probs=21.3
Q ss_pred CccccCcccCCC-ceeecCCCCccccHhhHHHHHhcC
Q 042698 112 CVICLSDFAPGE-RVRILPKCNHGFHVRCIDKWLRSN 147 (203)
Q Consensus 112 CaICl~~~~~~~-~v~~l~~C~H~FH~~Ci~~Wl~~~ 147 (203)
|+||.+ |..++ .-.+|+ |||+|..+||+.++++.
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 76544 456788 99999999999999743
No 33
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.34 E-value=1.3e-07 Score=63.71 Aligned_cols=50 Identities=30% Similarity=0.668 Sum_probs=24.2
Q ss_pred CcCccccCcccCCC--ceeecC--CCCccccHhhHHHHHhc----C-------CCCccccccccc
Q 042698 110 NECVICLSDFAPGE--RVRILP--KCNHGFHVRCIDKWLRS----N-------SSCPKCRHCLIE 159 (203)
Q Consensus 110 ~~CaICl~~~~~~~--~v~~l~--~C~H~FH~~Ci~~Wl~~----~-------~~CP~CR~~l~~ 159 (203)
.+|.||.+.+..++ ...+.+ .|++.||..||..||+. + ..||.|+..|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 57999999876333 233443 69999999999999962 1 139999988753
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.32 E-value=2e-07 Score=81.73 Aligned_cols=49 Identities=37% Similarity=0.864 Sum_probs=39.7
Q ss_pred CCCCcCccccCcccCCC-ceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 107 GLDNECVICLSDFAPGE-RVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~-~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
-+.++|+||||.+...- .++... |+|.||..|+..| ...+||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence 34578999999997654 455555 9999999999999 5668999998766
No 35
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.9e-07 Score=77.59 Aligned_cols=48 Identities=35% Similarity=0.859 Sum_probs=35.7
Q ss_pred CcCccccCcccCC-CceeecCCCCccccHhhHHHHHhc---CCCCcccccccc
Q 042698 110 NECVICLSDFAPG-ERVRILPKCNHGFHVRCIDKWLRS---NSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~-~~v~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~l~ 158 (203)
..|.|| .++.+. ..+.-..+|||+||..|+..|+.. +++||+||-.+.
T Consensus 5 A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 579999 555544 345444469999999999999975 357999994443
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.17 E-value=1.7e-06 Score=73.58 Aligned_cols=52 Identities=25% Similarity=0.632 Sum_probs=37.7
Q ss_pred CCcCccccCc-ccCCC-ceeecCCCCccccHhhHHHHH-hcCCCCccccccccccc
Q 042698 109 DNECVICLSD-FAPGE-RVRILPKCNHGFHVRCIDKWL-RSNSSCPKCRHCLIESC 161 (203)
Q Consensus 109 ~~~CaICl~~-~~~~~-~v~~l~~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~~~~ 161 (203)
+..|++|... |..++ .+.+.+ |||.||..||+..+ .....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 3579999996 33443 233335 99999999999966 44557999998776553
No 37
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.07 E-value=3.2e-06 Score=57.29 Aligned_cols=48 Identities=29% Similarity=0.454 Sum_probs=36.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc-CCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 160 (203)
...|+|+.+-|.++ .+++ +||.|-+.||..|++. +..||+|+..+...
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 45799999999886 4567 9999999999999988 77899999887654
No 38
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.07 E-value=1.3e-06 Score=74.38 Aligned_cols=48 Identities=38% Similarity=0.734 Sum_probs=41.9
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
-..|-||.+=|..+ ..+| |+|.||.-||..+|..+..||.|+..+.+.
T Consensus 23 lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 35799999998876 5677 999999999999999999999999877654
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.06 E-value=2e-06 Score=71.91 Aligned_cols=49 Identities=31% Similarity=0.527 Sum_probs=40.6
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
....|-||-+-|..+ ..++ |||.||.-||...|..+..||+||.+.-+.
T Consensus 24 s~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 345799998887764 3455 999999999999999999999999866544
No 40
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.2e-06 Score=71.22 Aligned_cols=43 Identities=37% Similarity=0.838 Sum_probs=38.1
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCR 154 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 154 (203)
....|+||++.|... .+++ |+|.|+..|+..++.....||.||
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 456899999999998 7788 999999999999988555799999
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=8e-06 Score=70.12 Aligned_cols=52 Identities=33% Similarity=0.662 Sum_probs=41.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCcc-ccHhhHHHHHhcCCCCcccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIESCK 162 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 162 (203)
++..+|.||+++-++ ..++| |.|. .|..|.+.-.-.+.+||+||+.+.+.-+
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~ 340 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEELLE 340 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhhhe
Confidence 346789999999766 47899 9995 6788999865567789999999886643
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=7.6e-06 Score=71.27 Aligned_cols=49 Identities=31% Similarity=0.781 Sum_probs=37.2
Q ss_pred CCCcCccccCcccCC-CceeecCCCCccccHhhHHHHHhc--CCCCcccccc
Q 042698 108 LDNECVICLSDFAPG-ERVRILPKCNHGFHVRCIDKWLRS--NSSCPKCRHC 156 (203)
Q Consensus 108 ~~~~CaICl~~~~~~-~~v~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~ 156 (203)
...+|+|||+++... +...+.+.|+|.|-.+||+.|+.+ ...||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 346899999999743 444444469999999999999952 2359999753
No 43
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.85 E-value=6.9e-06 Score=68.97 Aligned_cols=52 Identities=31% Similarity=0.784 Sum_probs=43.1
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHh-----------------------cCCCCccccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-----------------------SNSSCPKCRHCLIESC 161 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----------------------~~~~CP~CR~~l~~~~ 161 (203)
...|+|||.-|...+...++. |.|.||..|+.++|. .+..||+||..|....
T Consensus 115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 457999999999999899998 999999999988874 1124999998887543
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=2.7e-06 Score=72.81 Aligned_cols=57 Identities=35% Similarity=0.581 Sum_probs=45.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc-CCCCcccccccccccccccC
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIESCKKIEG 166 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~~~~~ 166 (203)
..+..|+|||+-++.. +.++.|.|.|+.+||..-++. +..||.||..+........+
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~D 98 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRID 98 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCC
Confidence 4467899999988775 455569999999999998865 56799999998876555433
No 45
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.4e-05 Score=64.68 Aligned_cols=53 Identities=25% Similarity=0.718 Sum_probs=44.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc--------CCCCccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS--------NSSCPKCRHCLIESC 161 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~l~~~~ 161 (203)
+....|..|-..+..+|.+|.. |-|+||++|+++|-.. ...||.|...|++.-
T Consensus 48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 4567799999999999999876 9999999999999742 235999999988654
No 46
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.70 E-value=7.3e-06 Score=76.35 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=40.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
...|++|+..+.++......+ |+|.||..||+.|-+.-.+||+||..+...
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 346888887776665444455 999999999999999999999999876643
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.61 E-value=1.4e-05 Score=52.24 Aligned_cols=46 Identities=28% Similarity=0.566 Sum_probs=22.7
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
-.|++|.+-++.+ +... .|.|+|+..||..-+.. .||+|+.+-...
T Consensus 8 LrCs~C~~~l~~p--v~l~-~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~q 53 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLG-GCEHIFCSSCIRDCIGS--ECPVCHTPAWIQ 53 (65)
T ss_dssp TS-SSS-S--SS---B----SSS--B-TTTGGGGTTT--B-SSS--B-S-S
T ss_pred cCCcHHHHHhcCC--ceec-cCccHHHHHHhHHhcCC--CCCCcCChHHHH
Confidence 4699999988775 4344 49999999999885443 499998766544
No 48
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3.4e-05 Score=66.86 Aligned_cols=50 Identities=42% Similarity=0.937 Sum_probs=37.7
Q ss_pred CCCcCccccCcccCCC----ceeecCCCCccccHhhHHHHHh--c-----CCCCccccccc
Q 042698 108 LDNECVICLSDFAPGE----RVRILPKCNHGFHVRCIDKWLR--S-----NSSCPKCRHCL 157 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~----~v~~l~~C~H~FH~~Ci~~Wl~--~-----~~~CP~CR~~l 157 (203)
.+.+|.||++...+.. -...+|.|.|.|+..||..|-+ + .+.||.||...
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 4678999999876543 1233567999999999999984 3 35699999743
No 49
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.49 E-value=8.7e-05 Score=47.85 Aligned_cols=41 Identities=29% Similarity=0.620 Sum_probs=28.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC--CCcc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS--SCPK 152 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~ 152 (203)
...|+|.+..|+++ ++... |+|+|-++.|..|++++. .||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 46799999998865 66666 999999999999995433 5998
No 50
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=3.3e-05 Score=71.99 Aligned_cols=47 Identities=28% Similarity=0.699 Sum_probs=36.7
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHh-cCCCCcccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLIES 160 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 160 (203)
-.|++|-+.+.+ .+ .. .|+|+||..|+..-+. +++.||.|...+.+.
T Consensus 644 LkCs~Cn~R~Kd--~v-I~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 644 LKCSVCNTRWKD--AV-IT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred eeCCCccCchhh--HH-HH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 479999866554 23 33 3999999999999885 567899999887765
No 51
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.41 E-value=0.0001 Score=64.32 Aligned_cols=53 Identities=30% Similarity=0.691 Sum_probs=40.0
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhc--CCCCcccccccccccccccC
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS--NSSCPKCRHCLIESCKKIEG 166 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~~~~~~~~ 166 (203)
.-|-||-|. +..|++-| |||..|..|+..|-.. .+.||.||..|-..+..+.+
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid 424 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIID 424 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccceeee
Confidence 359999765 33477788 9999999999999633 56799999988755544433
No 52
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.37 E-value=6.5e-05 Score=56.35 Aligned_cols=35 Identities=23% Similarity=0.537 Sum_probs=30.0
Q ss_pred CCcCccccCcccCCCceeecCCCC------ccccHhhHHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCN------HGFHVRCIDKWL 144 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~------H~FH~~Ci~~Wl 144 (203)
..+|+||++.+..++.+..++ |+ |.||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 468999999999866777776 65 999999999994
No 53
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=4.6e-05 Score=48.06 Aligned_cols=47 Identities=28% Similarity=0.581 Sum_probs=31.7
Q ss_pred CCcCccccCcccCCCceeecCCCCcc-ccHhhHHHHH-hcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHG-FHVRCIDKWL-RSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl-~~~~~CP~CR~~l~~ 159 (203)
+++|.||+|.-.+. + +-.|||. .+.+|-.+-+ ..+..||+||+.+-.
T Consensus 7 ~dECTICye~pvds--V--lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDS--V--LYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchH--H--HHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 37899999885442 3 2239996 4456654433 367789999998753
No 54
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0001 Score=62.04 Aligned_cols=48 Identities=27% Similarity=0.538 Sum_probs=38.3
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc-CCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 160 (203)
..+|+||+.....+ ..++ |+|.|+.-||.--.+. +.+|++||..+...
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 35899999987665 4566 9999999999876654 55799999988743
No 55
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.22 E-value=0.00022 Score=70.56 Aligned_cols=53 Identities=28% Similarity=0.679 Sum_probs=42.7
Q ss_pred CCCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC----------CCCcccccccc
Q 042698 105 LPGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN----------SSCPKCRHCLI 158 (203)
Q Consensus 105 ~~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~~l~ 158 (203)
..+.++.|.||+.|--.....+.+. |+|+||.+|...-|.+. -+||+|+.+|.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3466789999999988778889998 99999999997765432 15999998765
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.04 E-value=0.00032 Score=62.25 Aligned_cols=54 Identities=28% Similarity=0.577 Sum_probs=44.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESCKK 163 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 163 (203)
+.+..|++|...+.++ +..+. |||.|+..|+..|+..+..||.|+..+......
T Consensus 19 ~~~l~C~~C~~vl~~p--~~~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP--VQTTT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCC--CCCCC-CCCcccccccchhhccCcCCcccccccchhhcc
Confidence 4557899999998876 22234 999999999999999999999999888766544
No 57
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.02 E-value=0.00024 Score=61.90 Aligned_cols=45 Identities=42% Similarity=0.973 Sum_probs=37.0
Q ss_pred CCcCccccCcccCC-CceeecCCCCccccHhhHHHHHhcC--CCCcccc
Q 042698 109 DNECVICLSDFAPG-ERVRILPKCNHGFHVRCIDKWLRSN--SSCPKCR 154 (203)
Q Consensus 109 ~~~CaICl~~~~~~-~~v~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR 154 (203)
+--|-.|-+.+... +.+..+| |.|+||..|+...|.++ ++||.||
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 34699999888644 4677898 99999999999999654 4799998
No 58
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00048 Score=60.93 Aligned_cols=50 Identities=34% Similarity=0.847 Sum_probs=42.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
..+.+|.||..-+.+. .++| |||.|+..||++-+-....||.||..+.+.
T Consensus 82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCcccccccccc
Confidence 4567899998888775 5667 999999999999777677799999998863
No 59
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.94 E-value=0.00036 Score=65.91 Aligned_cols=51 Identities=35% Similarity=0.791 Sum_probs=40.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC-------CCccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS-------SCPKCRHCL 157 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~-------~CP~CR~~l 157 (203)
....+|.||.+.+...+.+-....|.|+||..||..|.+... .||.|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 345689999999998887766667999999999999986421 499998433
No 60
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00042 Score=53.50 Aligned_cols=42 Identities=33% Similarity=0.737 Sum_probs=31.7
Q ss_pred CeEEccCCCCCCCCCCcCccccCcccCCCceeecCCCCccccHh
Q 042698 95 TIVKYSGELKLPGLDNECVICLSDFAPGERVRILPKCNHGFHVR 138 (203)
Q Consensus 95 p~~~~~~~~~~~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~ 138 (203)
|...|.++. ..+...+|.||||++..++.+..|| |-.+||+.
T Consensus 164 PrlsYNdDV-L~ddkGECvICLEdL~~GdtIARLP-CLCIYHK~ 205 (205)
T KOG0801|consen 164 PRLSYNDDV-LKDDKGECVICLEDLEAGDTIARLP-CLCIYHKQ 205 (205)
T ss_pred cccccccch-hcccCCcEEEEhhhccCCCceeccc-eEEEeecC
Confidence 444444422 2234568999999999999999999 99999973
No 61
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.00021 Score=61.62 Aligned_cols=45 Identities=27% Similarity=0.578 Sum_probs=33.4
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
.+-|.||+++..+ ...+| |||.=+ |...-. ...+||+||..+.-.
T Consensus 305 p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~-~l~~CPvCR~rI~~~ 349 (355)
T KOG1571|consen 305 PDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSK-HLPQCPVCRQRIRLV 349 (355)
T ss_pred CCceEEecCCccc---eeeec-CCcEEE--chHHHh-hCCCCchhHHHHHHH
Confidence 3569999999877 46778 999954 777643 334599999987543
No 62
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0046 Score=52.88 Aligned_cols=45 Identities=20% Similarity=0.425 Sum_probs=36.1
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccc
Q 042698 106 PGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKC 153 (203)
Q Consensus 106 ~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 153 (203)
+.....|++|+...+++-.+.+ -|-+||..||..++.++..||+=
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT 341 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVT 341 (357)
T ss_pred CCccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCcc
Confidence 3455789999999877633322 69999999999999999999974
No 63
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.60 E-value=0.00092 Score=47.96 Aligned_cols=32 Identities=25% Similarity=0.682 Sum_probs=26.7
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHH
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCID 141 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~ 141 (203)
.+..|++|-..+.. ....+.| |||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 35679999999977 5667778 99999999975
No 64
>PHA02862 5L protein; Provisional
Probab=96.50 E-value=0.0023 Score=48.56 Aligned_cols=48 Identities=21% Similarity=0.562 Sum_probs=34.3
Q ss_pred CCcCccccCcccCCCceeecCCC---CccccHhhHHHHHhc--CCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKC---NHGFHVRCIDKWLRS--NSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C---~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~ 159 (203)
++.|=||+++-.+ .+.-+. | ...-|.+|+.+|+.. +..|++|+....-
T Consensus 2 ~diCWIC~~~~~e--~~~PC~-C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDE--RNNFCG-CNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCC--Cccccc-ccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3579999998533 233222 4 377899999999964 4469999987653
No 65
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.40 E-value=0.0038 Score=48.21 Aligned_cols=50 Identities=22% Similarity=0.624 Sum_probs=34.7
Q ss_pred CCCcCccccCcccCCCceeecCCCCc---cccHhhHHHHHhcC--CCCcccccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNH---GFHVRCIDKWLRSN--SSCPKCRHCLIES 160 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H---~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~ 160 (203)
.+..|=||.++-. +...-.. |.. .-|.+|+..|+... ..|++|+....-.
T Consensus 7 ~~~~CRIC~~~~~--~~~~PC~-CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYD--VVTNYCN-CKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCC--CccCCcc-cCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 4568999998853 2233232 544 55999999999644 4699999876543
No 66
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.08 E-value=0.0041 Score=38.39 Aligned_cols=41 Identities=37% Similarity=0.978 Sum_probs=25.9
Q ss_pred CccccCcccCCCceeecC-CCC---ccccHhhHHHHHh--cCCCCccc
Q 042698 112 CVICLSDFAPGERVRILP-KCN---HGFHVRCIDKWLR--SNSSCPKC 153 (203)
Q Consensus 112 CaICl~~~~~~~~v~~l~-~C~---H~FH~~Ci~~Wl~--~~~~CP~C 153 (203)
|-||+++-..++.+ +.| .|+ -..|..|+..|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67899887766533 344 133 4789999999996 44569887
No 67
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0036 Score=55.00 Aligned_cols=46 Identities=24% Similarity=0.635 Sum_probs=37.4
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc--------CCCCccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS--------NSSCPKCRH 155 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~ 155 (203)
-..|.||+++......+..+| |+|+|++.|+..++.. .-+||-+..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 357999999988888889999 9999999999999842 124876654
No 68
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.027 Score=47.22 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=37.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC--CCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN--SSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~ 160 (203)
.++.+|++|-+.-..+ ....+ |+|+||.-||..-+... -+||.|-.+..+.
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred cCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 4567899998775443 34444 99999999999876544 5799997766543
No 69
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.03 E-value=0.0025 Score=50.83 Aligned_cols=43 Identities=23% Similarity=0.567 Sum_probs=36.7
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHC 156 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 156 (203)
..|.||-.+|+.+ .++. |||.|+..|...=++....|-+|-..
T Consensus 197 F~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred eeehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchh
Confidence 4799999999886 4554 99999999999988888899999654
No 70
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.01 E-value=0.0016 Score=55.66 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=38.2
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..-+|.+|-.=|.+...+. .|-|.||+.||...+.....||.|...+-
T Consensus 14 ~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih 61 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIH 61 (331)
T ss_pred cceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceecc
Confidence 4568999977766653332 39999999999999999999999986554
No 71
>PHA03096 p28-like protein; Provisional
Probab=95.98 E-value=0.0034 Score=53.31 Aligned_cols=37 Identities=30% Similarity=0.675 Sum_probs=29.0
Q ss_pred CcCccccCcccCCC----ceeecCCCCccccHhhHHHHHhc
Q 042698 110 NECVICLSDFAPGE----RVRILPKCNHGFHVRCIDKWLRS 146 (203)
Q Consensus 110 ~~CaICl~~~~~~~----~v~~l~~C~H~FH~~Ci~~Wl~~ 146 (203)
-.|.||++...... .-..++.|.|.|+..|+..|...
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 47999999876542 22356789999999999999853
No 72
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.93 E-value=0.012 Score=37.37 Aligned_cols=34 Identities=26% Similarity=0.787 Sum_probs=30.5
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDK 142 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 142 (203)
...|.+|-+.|.+++.+.+.+.|+-.||..|.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4579999999998888999999999999999765
No 73
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.0075 Score=49.73 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=46.3
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
...|+||.+.+.+.-.+.+|..|||+|..+|++..++....||+|-.++.+..
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 35699999999998888888779999999999999999999999987776553
No 74
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.81 E-value=0.0038 Score=56.52 Aligned_cols=48 Identities=27% Similarity=0.560 Sum_probs=36.4
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHh-----cCCCCcccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-----SNSSCPKCRHCLI 158 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l~ 158 (203)
.+..+|.+|-++-++. +... |.|.||+-||.+++. .+-+||.|...+.
T Consensus 534 k~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3456899999885553 4555 999999999988874 3457999976554
No 75
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0005 Score=59.81 Aligned_cols=50 Identities=24% Similarity=0.609 Sum_probs=44.0
Q ss_pred CCcCccccCcccCC-CceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPG-ERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~-~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
...|+||.+.+... +.+..+. |||++|..||..||.....||.||+.+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 35799999999877 6777777 99999999999999988899999998773
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.74 E-value=0.011 Score=36.69 Aligned_cols=44 Identities=20% Similarity=0.538 Sum_probs=21.6
Q ss_pred CccccCcccCCC-ceeecCCCCccccHhhHHHHHh-cCCCCcccccc
Q 042698 112 CVICLSDFAPGE-RVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHC 156 (203)
Q Consensus 112 CaICl~~~~~~~-~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~ 156 (203)
|++|.+++...+ ...-.+ |++..+..|...-+. ....||-||..
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 789999984443 334444 889888888888665 36679999975
No 77
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.63 E-value=0.007 Score=36.65 Aligned_cols=41 Identities=34% Similarity=0.814 Sum_probs=23.0
Q ss_pred CccccCcccCCCceeecCCCCccccHhhHHHHHhcCC--CCccc
Q 042698 112 CVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS--SCPKC 153 (203)
Q Consensus 112 CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~C 153 (203)
|.+|-+-...+....... |+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667777666664333333 888999999999997665 69987
No 78
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.0074 Score=50.94 Aligned_cols=44 Identities=25% Similarity=0.457 Sum_probs=37.4
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCL 157 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 157 (203)
..|-||...|..+ .++. |+|.|+..|...=+++...|.+|-+..
T Consensus 242 f~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccc---hhhc-CCceeehhhhccccccCCcceeccccc
Confidence 4599999999886 4555 999999999999888889999997644
No 79
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.014 Score=45.95 Aligned_cols=30 Identities=33% Similarity=0.947 Sum_probs=23.9
Q ss_pred CCCccccHhhHHHHHhc----C-------CCCccccccccc
Q 042698 130 KCNHGFHVRCIDKWLRS----N-------SSCPKCRHCLIE 159 (203)
Q Consensus 130 ~C~H~FH~~Ci~~Wl~~----~-------~~CP~CR~~l~~ 159 (203)
+||.-||.-|+..||+. + ..||.|..++.-
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 49999999999999963 1 149999877653
No 80
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.13 E-value=0.0075 Score=49.52 Aligned_cols=43 Identities=23% Similarity=0.593 Sum_probs=31.5
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCL 157 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 157 (203)
-|-.|.--- .++....+. |.|+||..|...- ....||+||..+
T Consensus 5 hCn~C~~~~-~~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~i 47 (233)
T KOG4739|consen 5 HCNKCFRFP-SQDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSI 47 (233)
T ss_pred EeccccccC-CCCceeeee-chhhhhhhhcccC--Ccccccccccee
Confidence 366665433 377788887 9999999998773 222899999874
No 81
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.015 Score=55.45 Aligned_cols=40 Identities=25% Similarity=0.763 Sum_probs=31.2
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
..|..|-....-+ ..-.. |+|.||.+|++ .+...||-|+.
T Consensus 841 skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccch
Confidence 5799998776654 33343 99999999999 45567999987
No 82
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.65 E-value=0.044 Score=47.45 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=41.9
Q ss_pred hcCeEEccCCCCCCCCCCcCccccCcccCCCceeecCCCCccccHhhHHHH--HhcCCCCcccccccc
Q 042698 93 AFTIVKYSGELKLPGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKW--LRSNSSCPKCRHCLI 158 (203)
Q Consensus 93 ~lp~~~~~~~~~~~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W--l~~~~~CP~CR~~l~ 158 (203)
..|...-++.+...++..-|.||-+.+.- ..++| |+|..+.-|-.+- |-.++.||+||....
T Consensus 45 aEPnlttsSaddtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 45 AEPNLTTSSADDTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cCCccccccccccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 34554444444444445679999877543 46788 9999999998663 345778999997543
No 83
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.048 Score=47.31 Aligned_cols=49 Identities=29% Similarity=0.577 Sum_probs=40.1
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
.++..|+||.-.-.. ....| |+|.=+..||.+-+.+.+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~---Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN---AVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccch---hhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 456789999755322 35667 99999999999999999999999988774
No 84
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.011 Score=49.84 Aligned_cols=43 Identities=26% Similarity=0.697 Sum_probs=30.0
Q ss_pred CCcCccccCcccCCCceeecCCCCccc-cHhhHHHHHhcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGF-HVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
..-|+||++...+ +..|+ |||.- +.+|-.. -..||+||+.+.-
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhccc----cccCchHHHHHHH
Confidence 4569999988544 57788 99963 3344433 3479999987653
No 85
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=0.028 Score=53.87 Aligned_cols=36 Identities=22% Similarity=0.564 Sum_probs=28.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHH
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWL 144 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl 144 (203)
+.+++|.+|.-.+... .-.+.+ |||.||++||..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 4567899998887665 345667 99999999998765
No 86
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.81 E-value=0.073 Score=41.15 Aligned_cols=36 Identities=25% Similarity=0.536 Sum_probs=22.6
Q ss_pred CCcCccccCcccCCCc---------eeecCCCCc-cccHhhHHHHHh
Q 042698 109 DNECVICLSDFAPGER---------VRILPKCNH-GFHVRCIDKWLR 145 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~---------v~~l~~C~H-~FH~~Ci~~Wl~ 145 (203)
+..|+||||--.+.-. .|-.- |+- .-|..|++++-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHH
Confidence 4689999988654421 22222 543 347899999864
No 87
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.66 E-value=0.045 Score=46.49 Aligned_cols=43 Identities=30% Similarity=0.702 Sum_probs=33.1
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHh-cCCCCccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRH 155 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~ 155 (203)
..|+.|..-.... ++ ++.|+|.|+.+||..-|. ....||.|..
T Consensus 275 LkCplc~~Llrnp--~k-T~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP--MK-TPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc--cc-CccccchHHHHHHhhhhhhccccCCCccc
Confidence 5799987766654 33 366999999999998875 4567999944
No 88
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.61 E-value=0.037 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.878 Sum_probs=22.1
Q ss_pred cCCCCccccHhhHHHHHhcCCCCcc
Q 042698 128 LPKCNHGFHVRCIDKWLRSNSSCPK 152 (203)
Q Consensus 128 l~~C~H~FH~~Ci~~Wl~~~~~CP~ 152 (203)
+..|+|+.|..|...|+.....||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCCcCCC
Confidence 3359999999999999999999984
No 89
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=93.56 E-value=0.22 Score=29.11 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042698 37 AVIVLSVLVCGIICSLGLHFLIRCILVSWS 66 (203)
Q Consensus 37 ~iiii~il~~~~i~~l~~~~~~~~~~rr~~ 66 (203)
++-+++.+++++++.++.++++.|++||.+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 444444444454444555555566666633
No 90
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.38 E-value=0.1 Score=43.72 Aligned_cols=53 Identities=17% Similarity=0.379 Sum_probs=40.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
.....|+|...+|........+-.|||+|-..+|..- +....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 4456799999999665555555449999999999995 3355799998776633
No 91
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.17 E-value=0.036 Score=52.49 Aligned_cols=47 Identities=36% Similarity=0.758 Sum_probs=36.6
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhc--CCCCccccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS--NSSCPKCRHCLIESC 161 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~~~ 161 (203)
..|.||++ .+...... |+|.|+.+|+..-+.. ...||+||..+.+..
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 68999999 34455566 9999999999988753 336999998877654
No 92
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.02 E-value=0.028 Score=55.80 Aligned_cols=43 Identities=33% Similarity=0.720 Sum_probs=36.7
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
..|.||++.+...-.+.. |+|.++..|+..|+..+..||+|+.
T Consensus 1154 ~~c~ic~dil~~~~~I~~---cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIAG---CGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cchHHHHHHHHhcCCeee---echhHhhhHHHHHHHHhccCcchhh
Confidence 479999999886533332 9999999999999999999999984
No 93
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.93 E-value=0.084 Score=45.62 Aligned_cols=53 Identities=19% Similarity=0.476 Sum_probs=36.7
Q ss_pred CCCCcCccccCcccCCCce-eecCCCCccccHhhHHHHHh-cCCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERV-RILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v-~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 160 (203)
++++.|+.|++++...|+- .-++ ||-..|.-|...--+ -+..||-||+...+.
T Consensus 12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 4556799999999877654 3455 887777777655322 245699999876543
No 94
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=0.08 Score=44.96 Aligned_cols=47 Identities=34% Similarity=0.761 Sum_probs=37.5
Q ss_pred CcCccccCcccCCC---ceeecCCCCccccHhhHHHHHhcCC-CCccccccc
Q 042698 110 NECVICLSDFAPGE---RVRILPKCNHGFHVRCIDKWLRSNS-SCPKCRHCL 157 (203)
Q Consensus 110 ~~CaICl~~~~~~~---~v~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l 157 (203)
.+|-||-++|...+ .-+.+. |||.|+..|+..-+.... .||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998764 235566 999999999998765544 599999874
No 95
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.45 E-value=0.068 Score=45.14 Aligned_cols=45 Identities=27% Similarity=0.651 Sum_probs=37.3
Q ss_pred CcCccccCcccCCC-ceeecCCCCccccHhhHHHHHhcCCCCccccc
Q 042698 110 NECVICLSDFAPGE-RVRILPKCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 110 ~~CaICl~~~~~~~-~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
..|+||.+.+-... .+..++ |||.-|..|+......+-+||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 34999999876654 445676 9999999999999887888999988
No 96
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.31 E-value=0.16 Score=48.53 Aligned_cols=63 Identities=21% Similarity=0.404 Sum_probs=43.7
Q ss_pred CCCCCcCccccCcccCCCceeecC-CCC---ccccHhhHHHHHh--cCCCCcccccccccccccccCCCC
Q 042698 106 PGLDNECVICLSDFAPGERVRILP-KCN---HGFHVRCIDKWLR--SNSSCPKCRHCLIESCKKIEGSTQ 169 (203)
Q Consensus 106 ~~~~~~CaICl~~~~~~~~v~~l~-~C~---H~FH~~Ci~~Wl~--~~~~CP~CR~~l~~~~~~~~~~~~ 169 (203)
.+++..|-||..+-.+++.+- .| .|. ...|.+|+.+|+. ....|-+|+.++.-+.-..++-+|
T Consensus 9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~ 77 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQ 77 (1175)
T ss_pred CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCc
Confidence 345578999999987777653 23 143 5679999999996 345699999887755444344333
No 97
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.037 Score=51.39 Aligned_cols=43 Identities=28% Similarity=0.553 Sum_probs=32.8
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
..|.||+..|.......+...|||..+..|+.. ..+++|| |+.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCc
Confidence 369999999887654444445999999999987 4567788 654
No 98
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.50 E-value=0.16 Score=44.58 Aligned_cols=28 Identities=32% Similarity=0.961 Sum_probs=20.2
Q ss_pred CCccccHhhHHHHHhc-------------CCCCcccccccc
Q 042698 131 CNHGFHVRCIDKWLRS-------------NSSCPKCRHCLI 158 (203)
Q Consensus 131 C~H~FH~~Ci~~Wl~~-------------~~~CP~CR~~l~ 158 (203)
|.-..|.+|+.+|+.. +..||+||+.+-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4455678999999842 235999999754
No 99
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.00 E-value=0.11 Score=32.97 Aligned_cols=44 Identities=25% Similarity=0.444 Sum_probs=30.9
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
..|..|...-.. -.+++ |+|+....|++-+ +-.-||.|-..+..
T Consensus 8 ~~~~~~~~~~~~---~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTK---GTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEccccccc---ccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence 346666554333 25677 9999999998875 55569999776653
No 100
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=90.22 E-value=0.6 Score=34.72 Aligned_cols=8 Identities=13% Similarity=0.098 Sum_probs=3.3
Q ss_pred CCCCChhH
Q 042698 30 ESSLNSNA 37 (203)
Q Consensus 30 ~~~~~~~~ 37 (203)
.+.|....
T Consensus 58 ~h~fs~~~ 65 (122)
T PF01102_consen 58 VHRFSEPA 65 (122)
T ss_dssp SSSSS-TC
T ss_pred ccCccccc
Confidence 34555443
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=0.12 Score=44.06 Aligned_cols=44 Identities=30% Similarity=0.628 Sum_probs=28.9
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|--|=-.+. .-=|..+ |+|+||.+|-.. ...+.||.|-..+.
T Consensus 91 HfCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 34766743322 2236788 999999999765 34567999965443
No 102
>PF15050 SCIMP: SCIMP protein
Probab=89.96 E-value=0.84 Score=33.67 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 36 NAVIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 36 ~~iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
++++.++|+++.+.+.+++++++|+.+|+
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444444444444554444
No 103
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=89.39 E-value=0.31 Score=39.34 Aligned_cols=40 Identities=45% Similarity=0.880 Sum_probs=29.9
Q ss_pred CCcCccccCc-----ccCCCceeecCCCCccccHhhHHHHHhcCCCCcccc
Q 042698 109 DNECVICLSD-----FAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCR 154 (203)
Q Consensus 109 ~~~CaICl~~-----~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 154 (203)
+..|.+|-++ |+. +.+...+.|+-+||..|+.. ..||-|-
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 4678899753 333 35667778999999999872 6699993
No 104
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=0.2 Score=46.35 Aligned_cols=50 Identities=32% Similarity=0.788 Sum_probs=40.5
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccccccc
Q 042698 106 PGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESCKK 163 (203)
Q Consensus 106 ~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 163 (203)
.+..+.|.+|+.++ ..+..+ |. |..|+..|+-.+..||+|+..+......
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFL 525 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccccc
Confidence 34457899999998 346666 88 8999999999999999999888766443
No 105
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=88.56 E-value=0.17 Score=47.01 Aligned_cols=41 Identities=27% Similarity=0.784 Sum_probs=27.3
Q ss_pred CCcCccccCc-----ccCCCceeecCCCCccccHhhHHHHHhcCCCCccc
Q 042698 109 DNECVICLSD-----FAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKC 153 (203)
Q Consensus 109 ~~~CaICl~~-----~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 153 (203)
...|.+|-.. |+ .+.++.+..|+++||+.|+.. ....||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 3567777221 33 344555556999999999765 44559999
No 106
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.53 E-value=0.35 Score=41.47 Aligned_cols=44 Identities=20% Similarity=0.522 Sum_probs=32.1
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
.+|+||.+.+..+ +.+.+ =||.-+..|-. +....||.||..+..
T Consensus 49 leCPvC~~~l~~P--i~QC~-nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 49 LDCPVCFNPLSPP--IFQCD-NGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred ccCchhhccCccc--ceecC-CCcEehhhhhh---hhcccCCcccccccc
Confidence 5799999999886 33322 26877777765 456779999988873
No 107
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.03 E-value=0.25 Score=41.18 Aligned_cols=51 Identities=27% Similarity=0.710 Sum_probs=34.5
Q ss_pred CCCCcCccccCcccCCC---ceeecCCC---CccccHhhHHHHHhcCC--------CCcccccccc
Q 042698 107 GLDNECVICLSDFAPGE---RVRILPKC---NHGFHVRCIDKWLRSNS--------SCPKCRHCLI 158 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~---~v~~l~~C---~H~FH~~Ci~~Wl~~~~--------~CP~CR~~l~ 158 (203)
+.+..|=||+..=+++. .|.-+. | .|.-|..|+..|+..+. +||-|+....
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCr-CRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCR-CRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhccccc-ccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 34567999998755543 222232 4 39999999999994221 4999987544
No 108
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.88 E-value=0.44 Score=45.28 Aligned_cols=41 Identities=24% Similarity=0.484 Sum_probs=30.8
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPK 152 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~ 152 (203)
-.|.+|-..+.. .....+.|+|.-|.+|+..|+.....||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 368888665543 23345569999999999999988877765
No 110
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.88 E-value=0.37 Score=40.93 Aligned_cols=52 Identities=27% Similarity=0.683 Sum_probs=36.1
Q ss_pred CCcCccccCcccCCCc-eeecC-CCC---ccccHhhHHHHHh--cCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGER-VRILP-KCN---HGFHVRCIDKWLR--SNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~-v~~l~-~C~---H~FH~~Ci~~Wl~--~~~~CP~CR~~l~~~ 160 (203)
+..|-||.++...... ....| .|+ +..|..|++.|+. .+..|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4689999998765431 23344 143 6779999999997 445699998755544
No 111
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.71 E-value=0.25 Score=40.80 Aligned_cols=46 Identities=30% Similarity=0.850 Sum_probs=34.4
Q ss_pred CCcCccccCc-ccCCC-ceeecCCCCccccHhhHHHHHhcC-CCCc--ccc
Q 042698 109 DNECVICLSD-FAPGE-RVRILPKCNHGFHVRCIDKWLRSN-SSCP--KCR 154 (203)
Q Consensus 109 ~~~CaICl~~-~~~~~-~v~~l~~C~H~FH~~Ci~~Wl~~~-~~CP--~CR 154 (203)
+..|+||-.+ |-.++ ++-+-|.|-|..|..|+++-+... ..|| -|-
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 4689999877 34444 444556799999999999998654 5799 773
No 112
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.26 E-value=0.56 Score=39.74 Aligned_cols=47 Identities=23% Similarity=0.664 Sum_probs=33.2
Q ss_pred cCccccCc-ccCCCceeecCCCCccccHhhHHHHHhc-CCCCccccccc
Q 042698 111 ECVICLSD-FAPGERVRILPKCNHGFHVRCIDKWLRS-NSSCPKCRHCL 157 (203)
Q Consensus 111 ~CaICl~~-~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l 157 (203)
.|++|-.. |..++.......|+|-.+..|++.-+.. ...||-|-.-+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 48888765 4555533333349999999999998754 55799995433
No 113
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=86.27 E-value=1.3 Score=30.94 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 19 QPVTAAHPYSSESSLNSNAVIVLSVLVCGIICSLGLHFLIR 59 (203)
Q Consensus 19 ~p~~~~~~~~s~~~~~~~~iiii~il~~~~i~~l~~~~~~~ 59 (203)
|.++...+.+|+..++....+++++++.+.++.|+..++.|
T Consensus 20 P~~p~~~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 20 PRVPTAAPSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred CCCCCCCCCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 34445667778888888777777666666655555554443
No 114
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=86.17 E-value=0.47 Score=29.09 Aligned_cols=44 Identities=23% Similarity=0.539 Sum_probs=30.4
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHh------cCCCCccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR------SNSSCPKCRH 155 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~ 155 (203)
.|.||.. ...+..+.....|+..||..|+..=.. ..-.||.|+.
T Consensus 1 ~C~vC~~-~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ-SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS-SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC-cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3889988 344455666667999999999976432 1235888853
No 115
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=0.3 Score=43.38 Aligned_cols=38 Identities=24% Similarity=0.658 Sum_probs=28.4
Q ss_pred CCcCccccCcccCC-CceeecCCCCccccHhhHHHHHhcC
Q 042698 109 DNECVICLSDFAPG-ERVRILPKCNHGFHVRCIDKWLRSN 147 (203)
Q Consensus 109 ~~~CaICl~~~~~~-~~v~~l~~C~H~FH~~Ci~~Wl~~~ 147 (203)
..+|.||..+.... ++..+.. |+|.|+.+|+...+..+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~-C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLK-CGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccCccCccccccHhhhHHHhc-ccchhhhHHhHHHhhhh
Confidence 46899999555544 4445454 99999999999988643
No 116
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=85.62 E-value=0.21 Score=47.06 Aligned_cols=47 Identities=30% Similarity=0.667 Sum_probs=36.6
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhc---CCCCcccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS---NSSCPKCRHCLIES 160 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~l~~~ 160 (203)
.+|+||+..+..+ ..+. |.|.|...|+..-+.. ...||+|+..+.-.
T Consensus 22 lEc~ic~~~~~~p---~~~k-c~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 22 LECPICLEHVKEP---SLLK-CDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred ccCCceeEEeecc---chhh-hhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 5899999999886 4555 9999999998765543 34699998776644
No 117
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.59 E-value=0.47 Score=40.32 Aligned_cols=29 Identities=21% Similarity=0.629 Sum_probs=22.3
Q ss_pred CCccccHhhHHHHHh-------------cCCCCccccccccc
Q 042698 131 CNHGFHVRCIDKWLR-------------SNSSCPKCRHCLIE 159 (203)
Q Consensus 131 C~H~FH~~Ci~~Wl~-------------~~~~CP~CR~~l~~ 159 (203)
|.-..+.+|+.+|+. .+.+||+||+.+--
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 667788899999984 23469999987653
No 118
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.01 E-value=0.79 Score=40.46 Aligned_cols=44 Identities=18% Similarity=0.403 Sum_probs=35.2
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC---CCccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS---SCPKC 153 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~---~CP~C 153 (203)
-..|+|=.+.-.++..-..+. |||+..++-+..--++.. .||.|
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 357999887777766677787 999999999999665544 59999
No 119
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=84.90 E-value=0.53 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.658 Sum_probs=14.9
Q ss_pred cCccccCcccCCCceeecCCCCccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGF 135 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~F 135 (203)
.|+-|..++... .+..|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 477777766443 45566688877
No 120
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.14 E-value=0.4 Score=45.73 Aligned_cols=43 Identities=23% Similarity=0.566 Sum_probs=32.3
Q ss_pred CCcCccccCcccCC----CceeecCCCCccccHhhHHHHHhcCCCCccc
Q 042698 109 DNECVICLSDFAPG----ERVRILPKCNHGFHVRCIDKWLRSNSSCPKC 153 (203)
Q Consensus 109 ~~~CaICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 153 (203)
...|.-|.+..-.. +.+.++. |+|.||+.|+..-..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 34799999886532 4567777 999999999998876655 5444
No 121
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=84.02 E-value=1.7 Score=35.30 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=23.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 12 IQNPLNEQPVTAAHPYSSESSLNSNAVIVLSVLVCGIICSLGLHFLIRCIL 62 (203)
Q Consensus 12 ~~~~~~~~p~~~~~~~~s~~~~~~~~iiii~il~~~~i~~l~~~~~~~~~~ 62 (203)
|..|..+..++.+++..+....+..+.++-+++.++ +++++..++|+++
T Consensus 16 ~~tPl~~~Ia~d~~~~~~~d~~~I~iaiVAG~~tVI--LVI~i~v~vR~CR 64 (221)
T PF08374_consen 16 LETPLDRNIAGDPASSRSKDYVKIMIAIVAGIMTVI--LVIFIVVLVRYCR 64 (221)
T ss_pred ccCCCcCcccCCCCccccccceeeeeeeecchhhhH--HHHHHHHHHHHHh
Confidence 346677776665555555444444433443333333 3333333445333
No 122
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=83.29 E-value=0.94 Score=34.09 Aligned_cols=51 Identities=24% Similarity=0.482 Sum_probs=34.8
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHH-HHH--hcCCCCcccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCID-KWL--RSNSSCPKCRHCLIES 160 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~-~Wl--~~~~~CP~CR~~l~~~ 160 (203)
.+|-||.|.-.+..-+.--..||-..+.-|-. .|- ..+..||+|+.++-..
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 58999998866553333222589888877654 453 2467899999987654
No 123
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.78 E-value=0.96 Score=43.36 Aligned_cols=57 Identities=9% Similarity=0.219 Sum_probs=40.5
Q ss_pred CCCCcCccccCcccCCC---ceeecCCCCccccHhhHHHHHhc------CCCCccccccccccccc
Q 042698 107 GLDNECVICLSDFAPGE---RVRILPKCNHGFHVRCIDKWLRS------NSSCPKCRHCLIESCKK 163 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~---~v~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~~~~~ 163 (203)
....+|.+|.-++..++ .+-.+.+|+|-|+-.||..|... +..|+.|...+....+.
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~ 159 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC 159 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh
Confidence 34567888888887732 22222359999999999999842 33589999888866544
No 124
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=81.39 E-value=0.78 Score=37.21 Aligned_cols=42 Identities=29% Similarity=0.736 Sum_probs=33.8
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCR 154 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 154 (203)
..|-+|..-.-.+ +.+..|+-.||..|+..++++...||.|-
T Consensus 182 k~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 4799998765443 44445999999999999999988899994
No 125
>PF15102 TMEM154: TMEM154 protein family
Probab=79.64 E-value=0.7 Score=35.34 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=4.9
Q ss_pred hhHHHHHh
Q 042698 138 RCIDKWLR 145 (203)
Q Consensus 138 ~Ci~~Wl~ 145 (203)
+=++.|+.
T Consensus 128 eeldkwm~ 135 (146)
T PF15102_consen 128 EELDKWMN 135 (146)
T ss_pred HHHHhHHH
Confidence 34677764
No 126
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=78.92 E-value=0.85 Score=28.08 Aligned_cols=30 Identities=27% Similarity=0.677 Sum_probs=21.3
Q ss_pred C-CccccHhhHHHHHhcCCCCcccccccccc
Q 042698 131 C-NHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 131 C-~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
| +|..+-.|+..-+.+...||+|..+++..
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 6 59999999999988989999999887643
No 127
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=77.96 E-value=1.5 Score=27.41 Aligned_cols=42 Identities=29% Similarity=0.742 Sum_probs=21.1
Q ss_pred CccccCcccCCC------ceeecCCCCccccHhhHHHHHh-cCCCCcccc
Q 042698 112 CVICLSDFAPGE------RVRILPKCNHGFHVRCIDKWLR-SNSSCPKCR 154 (203)
Q Consensus 112 CaICl~~~~~~~------~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR 154 (203)
|.-|+.+|.... .....+.|++.|+.+|=. ++. .=.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~-fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDV-FIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHH-TTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcCh-hhhccccCCcCCC
Confidence 555666666542 345677799999988843 332 334699883
No 128
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=77.46 E-value=1.3 Score=37.24 Aligned_cols=49 Identities=29% Similarity=0.644 Sum_probs=35.2
Q ss_pred CcCccccCcccCCCceeec---CCCCccccHhhHHHHHh---------cCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRIL---PKCNHGFHVRCIDKWLR---------SNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l---~~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~l~ 158 (203)
.+|-+|..++.+.+..+.. +.|+-++|-.|+..-+. ....||.|+..+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 5899999999555544432 25889999999999442 2346999987443
No 129
>PHA02657 hypothetical protein; Provisional
Probab=77.24 E-value=4.3 Score=28.12 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 042698 23 AAHPYSSESSLNSNAVIVLSVLVCGIICSLGLHFL 57 (203)
Q Consensus 23 ~~~~~~s~~~~~~~~iiii~il~~~~i~~l~~~~~ 57 (203)
++++|.-.-+|.+.+++.+.++++.+++++++.+.
T Consensus 14 ~~~~~~~~~~~~~imVitvfv~vI~il~flLLYLv 48 (95)
T PHA02657 14 ADNYYYMKINFESILVFTIFIFVVCILIYLLIYLV 48 (95)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45677778889998888887777777666655554
No 130
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=75.87 E-value=1.7 Score=25.17 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=16.2
Q ss_pred cCccccCcccCCCc-------eeecCCCCcccc
Q 042698 111 ECVICLSDFAPGER-------VRILPKCNHGFH 136 (203)
Q Consensus 111 ~CaICl~~~~~~~~-------v~~l~~C~H~FH 136 (203)
+|+-|-..|..++. ....+.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57778777765442 233445788775
No 131
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=75.53 E-value=3.4 Score=25.61 Aligned_cols=39 Identities=28% Similarity=0.684 Sum_probs=18.7
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhH--HHHHhc---C--CCCccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCI--DKWLRS---N--SSCPKCRH 155 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci--~~Wl~~---~--~~CP~CR~ 155 (203)
.|+|....+.. .+|-.. |.|. +|+ +.|+.. . -.||+|.+
T Consensus 4 ~CPls~~~i~~--P~Rg~~-C~H~---~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKN-CKHL---QCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp B-TTTSSB-SS--EEEETT---SS-----EEHHHHHHHHHHS---B-TTT--
T ss_pred eCCCCCCEEEe--CccCCc-Cccc---ceECHHHHHHHhhccCCeECcCCcC
Confidence 58888777665 367666 9886 444 445532 2 25999975
No 132
>PF14979 TMEM52: Transmembrane 52
Probab=75.51 E-value=11 Score=28.89 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=18.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 042698 33 LNSNAVIVLSVLVCGIICSLGLHFLIR-CILVS 64 (203)
Q Consensus 33 ~~~~~iiii~il~~~~i~~l~~~~~~~-~~~rr 64 (203)
.+.|+|+++.++++++++..+....+| |++||
T Consensus 17 ~~LWyIwLill~~~llLLCG~ta~C~rfCClrk 49 (154)
T PF14979_consen 17 SSLWYIWLILLIGFLLLLCGLTASCVRFCCLRK 49 (154)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345666666666666666555556666 45554
No 133
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=74.82 E-value=4 Score=28.48 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 042698 56 FLIRCILVS 64 (203)
Q Consensus 56 ~~~~~~~rr 64 (203)
+++.|+.+|
T Consensus 50 lwfvCC~kR 58 (94)
T PF05393_consen 50 LWFVCCKKR 58 (94)
T ss_pred HHHHHHHHh
Confidence 333444333
No 134
>PF15050 SCIMP: SCIMP protein
Probab=74.32 E-value=6.1 Score=29.22 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 042698 38 VIVLSVLVCGIICSLGLHFLIRCILVSWSRLE 69 (203)
Q Consensus 38 iiii~il~~~~i~~l~~~~~~~~~~rr~~~~~ 69 (203)
+++|..+. ++++.+.+.++.+|.+|+..|+.
T Consensus 8 FWiiLAVa-II~vS~~lglIlyCvcR~~lRqG 38 (133)
T PF15050_consen 8 FWIILAVA-IILVSVVLGLILYCVCRWQLRQG 38 (133)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcc
Confidence 55555544 66677888899999999966543
No 135
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.84 E-value=5.6 Score=29.12 Aligned_cols=46 Identities=24% Similarity=0.425 Sum_probs=33.7
Q ss_pred CCcCccccCcccCC----------CceeecCCCCccccHhhHHHHHhcCCCCcccc
Q 042698 109 DNECVICLSDFAPG----------ERVRILPKCNHGFHVRCIDKWLRSNSSCPKCR 154 (203)
Q Consensus 109 ~~~CaICl~~~~~~----------~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR 154 (203)
...|--|+..|... ......+.|++.|+.+|=.-+-..=.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35699999988643 11234667999999999777656666799995
No 136
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=73.17 E-value=15 Score=27.04 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042698 35 SNAVIVLSVLVCGIICSLGLHFLIRCILVSWSR 67 (203)
Q Consensus 35 ~~~iiii~il~~~~i~~l~~~~~~~~~~rr~~~ 67 (203)
..+-++|+-++++.+.++....+.+..+||+.+
T Consensus 84 ~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~ar 116 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMGAGALLRRCCRRAAR 116 (126)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666777777777766666665555533
No 137
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=72.50 E-value=5.5 Score=33.84 Aligned_cols=20 Identities=15% Similarity=-0.022 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042698 45 VCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 45 ~~~~i~~l~~~~~~~~~~rr 64 (203)
|++++.+++++++++.++||
T Consensus 267 vllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 267 VLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333333333
No 138
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=71.77 E-value=5.3 Score=31.91 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042698 40 VLSVLVCGIICSLGLHFLIRCILVSWSR 67 (203)
Q Consensus 40 ii~il~~~~i~~l~~~~~~~~~~rr~~~ 67 (203)
++++.+.+++++++++|..|.+.|...+
T Consensus 14 vlv~a~g~l~~vllfIfaKRQI~Rf~lr 41 (186)
T PF07406_consen 14 VLVIAYGSLVFVLLFIFAKRQIMRFALR 41 (186)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444556667777777766433
No 139
>PTZ00370 STEVOR; Provisional
Probab=71.35 E-value=5.8 Score=33.74 Aligned_cols=15 Identities=7% Similarity=-0.102 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHh
Q 042698 50 CSLGLHFLIRCILVS 64 (203)
Q Consensus 50 ~~l~~~~~~~~~~rr 64 (203)
.+++++++++.++||
T Consensus 268 ~vvliilYiwlyrrR 282 (296)
T PTZ00370 268 AVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333333333333333
No 140
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=70.99 E-value=7.6 Score=33.37 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 37 AVIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 37 ~iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
...+++.+++++++++++++ ++..+|.
T Consensus 255 ~t~I~aSiiaIliIVLIMvI-IYLILRY 281 (299)
T PF02009_consen 255 TTAIIASIIAILIIVLIMVI-IYLILRY 281 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33344444444444444444 4444444
No 141
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=68.20 E-value=16 Score=25.17 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=10.0
Q ss_pred CCCCChhHHHHHHHHHHHH
Q 042698 30 ESSLNSNAVIVLSVLVCGI 48 (203)
Q Consensus 30 ~~~~~~~~iiii~il~~~~ 48 (203)
-..+++.+++.|.++++++
T Consensus 19 ~~~l~pn~lMtILivLVII 37 (85)
T PF10717_consen 19 LNGLNPNTLMTILIVLVII 37 (85)
T ss_pred ccccChhHHHHHHHHHHHH
Confidence 3566666655544444333
No 142
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.66 E-value=5.8 Score=33.16 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=36.0
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
...|+|=--+|.....-..+-.|||+|-..-+.+. ...+|++|-+...+..
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 35699887777665544444459999998888773 3567999998766443
No 143
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.88 E-value=3.8 Score=37.04 Aligned_cols=36 Identities=28% Similarity=0.600 Sum_probs=29.3
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS 146 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~ 146 (203)
...+|-||.+.+.. .+..+. |+|.|+..|+...+.+
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 44689999999876 455566 9999999999999864
No 144
>PHA02650 hypothetical protein; Provisional
Probab=65.23 E-value=16 Score=24.89 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 042698 47 GIICSLGLHFLIR 59 (203)
Q Consensus 47 ~~i~~l~~~~~~~ 59 (203)
+++++++++++..
T Consensus 59 v~i~~l~~flYLK 71 (81)
T PHA02650 59 LIIVALFSFFVFK 71 (81)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 145
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=65.14 E-value=25 Score=32.24 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=10.3
Q ss_pred ccH-hhHHHHHhcCC
Q 042698 135 FHV-RCIDKWLRSNS 148 (203)
Q Consensus 135 FH~-~Ci~~Wl~~~~ 148 (203)
||. .++..||+.+.
T Consensus 289 fh~kGsL~dyL~~nt 303 (534)
T KOG3653|consen 289 FHPKGSLCDYLKANT 303 (534)
T ss_pred eccCCcHHHHHHhcc
Confidence 664 59999998654
No 146
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.62 E-value=3.5 Score=33.47 Aligned_cols=39 Identities=31% Similarity=0.600 Sum_probs=26.4
Q ss_pred CccccCcccCCCceeecCCCCcc-ccHhhHHHHHhcCCCCcccccccc
Q 042698 112 CVICLSDFAPGERVRILPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 112 CaICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
|-.|-+. +..|-.+| |+|. ++..|=.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 7777554 44588899 9865 44556654 345999987654
No 147
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=63.66 E-value=6.9 Score=21.25 Aligned_cols=29 Identities=17% Similarity=0.441 Sum_probs=11.2
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhH
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCI 140 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci 140 (203)
.|.+|-.+... ...-....|+-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 48888888766 445555569999999985
No 148
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.18 E-value=4 Score=36.27 Aligned_cols=43 Identities=26% Similarity=0.565 Sum_probs=31.2
Q ss_pred CcCccccCcccCCCc--eeecCCCCccccHhhHHHHHhcCCCCccc
Q 042698 110 NECVICLSDFAPGER--VRILPKCNHGFHVRCIDKWLRSNSSCPKC 153 (203)
Q Consensus 110 ~~CaICl~~~~~~~~--v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 153 (203)
..|+.|.--++.... -.+.. |||.|+..|...|...+..|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 468888776654442 34555 99999999999998777766544
No 149
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=62.20 E-value=30 Score=22.19 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 042698 49 ICSLGLHFLIRCILVS 64 (203)
Q Consensus 49 i~~l~~~~~~~~~~rr 64 (203)
++.+.+.+++|.....
T Consensus 18 l~~~~Ftl~IRri~~~ 33 (58)
T PF13314_consen 18 LFGASFTLFIRRILIN 33 (58)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333344455555544
No 150
>PRK01844 hypothetical protein; Provisional
Probab=61.74 E-value=24 Score=23.65 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042698 45 VCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 45 ~~~~i~~l~~~~~~~~~~rr 64 (203)
+++++.+++-+|+.|.+.++
T Consensus 12 ~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 12 VALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555544
No 151
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=61.73 E-value=32 Score=28.40 Aligned_cols=11 Identities=27% Similarity=0.060 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 042698 54 LHFLIRCILVS 64 (203)
Q Consensus 54 ~~~~~~~~~rr 64 (203)
+.-++|.++++
T Consensus 207 LvgLyr~C~k~ 217 (259)
T PF07010_consen 207 LVGLYRMCWKT 217 (259)
T ss_pred HHHHHHHhhcC
Confidence 33344444444
No 152
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=61.55 E-value=2.7 Score=38.08 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 34 NSNAVIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 34 ~~~~iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
....+++++++.+++++++++++++.|.+++
T Consensus 349 ~~~~~~l~vVlgvavlivVv~viv~vc~~~r 379 (439)
T PF02480_consen 349 SRGAALLGVVLGVAVLIVVVGVIVWVCLRCR 379 (439)
T ss_dssp -------------------------------
T ss_pred CcccchHHHHHHHHHHHHHHHHHhheeeeeh
Confidence 3444555555454444444444444444444
No 153
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=61.37 E-value=13 Score=35.22 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 38 VIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 38 iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
.|++++++++|+++++++.++.+.+|+
T Consensus 391 ~~~~~~f~~if~iva~ii~~~L~R~rr 417 (807)
T KOG1094|consen 391 AILIIIFVAIFLIVALIIALMLWRWRR 417 (807)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444333333
No 154
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=61.35 E-value=24 Score=26.36 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=2.7
Q ss_pred CCCCCCCCCCC
Q 042698 24 AHPYSSESSLN 34 (203)
Q Consensus 24 ~~~~~s~~~~~ 34 (203)
..+.+++.+..
T Consensus 33 ~~~~s~~~~~~ 43 (129)
T PF02060_consen 33 RSPSSSDDDNE 43 (129)
T ss_dssp S-S--TT-SST
T ss_pred cCCCCCCCCce
Confidence 33344444433
No 155
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.61 E-value=22 Score=22.86 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 34 NSNAVIVLSVLVCGIICSLGLHFLIRCILV 63 (203)
Q Consensus 34 ~~~~iiii~il~~~~i~~l~~~~~~~~~~r 63 (203)
-+..+++++.+++++++..++.+..+...+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r 47 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLR 47 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555565555555444443333
No 156
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.60 E-value=2.9 Score=31.55 Aligned_cols=52 Identities=37% Similarity=0.660 Sum_probs=28.4
Q ss_pred CCCCcCccccCc-ccCCCceeecCCCCccc-------cHhhHHHH-HhcCC---CCccccc--ccccccccccC
Q 042698 107 GLDNECVICLSD-FAPGERVRILPKCNHGF-------HVRCIDKW-LRSNS---SCPKCRH--CLIESCKKIEG 166 (203)
Q Consensus 107 ~~~~~CaICl~~-~~~~~~v~~l~~C~H~F-------H~~Ci~~W-l~~~~---~CP~CR~--~l~~~~~~~~~ 166 (203)
+.+.+|-||+.. |.++ |||.- +..|--.- ++.++ .|-+|+. .|......+-.
T Consensus 63 ~ddatC~IC~KTKFADG--------~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~ 128 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADG--------CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFY 128 (169)
T ss_pred CcCcchhhhhhcccccc--------cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHH
Confidence 456899999865 3333 66653 44444332 12233 3999975 44444444443
No 157
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=58.89 E-value=4.9 Score=36.19 Aligned_cols=32 Identities=31% Similarity=0.676 Sum_probs=27.1
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWL 144 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl 144 (203)
+..|+||..=|+++ ++++ |+|..+..|-..-+
T Consensus 4 elkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 4 ELKCPVCGSFYREP---IILP-CSHNLCQACARNIL 35 (699)
T ss_pred cccCceehhhccCc---eEee-cccHHHHHHHHhhc
Confidence 45799999998886 7788 99999999988655
No 158
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=58.82 E-value=20 Score=27.51 Aligned_cols=6 Identities=0% Similarity=0.213 Sum_probs=2.2
Q ss_pred CChhHH
Q 042698 33 LNSNAV 38 (203)
Q Consensus 33 ~~~~~i 38 (203)
|+..++
T Consensus 27 fsthm~ 32 (189)
T PF05568_consen 27 FSTHMY 32 (189)
T ss_pred HHHHHH
Confidence 333333
No 159
>PHA02849 putative transmembrane protein; Provisional
Probab=58.40 E-value=30 Score=23.58 Aligned_cols=14 Identities=14% Similarity=0.441 Sum_probs=7.3
Q ss_pred HHHhhcCeEEccCC
Q 042698 89 KALKAFTIVKYSGE 102 (203)
Q Consensus 89 ~~~~~lp~~~~~~~ 102 (203)
+....+..+.|.++
T Consensus 61 RsF~~Ld~VYYTdD 74 (82)
T PHA02849 61 RSFTHLNNVYYTSD 74 (82)
T ss_pred hhHHHhcCEEeccC
Confidence 33444566666543
No 160
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=58.21 E-value=6.7 Score=21.77 Aligned_cols=37 Identities=30% Similarity=0.574 Sum_probs=23.2
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCL 157 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 157 (203)
.|+.|-..+...+..... =+..||.+|+. |..|+..|
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~Cf~--------C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPECFK--------CSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccCCC--------CcccCCcC
Confidence 378888887776333332 46788887753 55665544
No 161
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=58.11 E-value=5.5 Score=22.86 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=16.2
Q ss_pred cCccccCcccCCCc-------eeecCCCCcccc
Q 042698 111 ECVICLSDFAPGER-------VRILPKCNHGFH 136 (203)
Q Consensus 111 ~CaICl~~~~~~~~-------v~~l~~C~H~FH 136 (203)
+|+=|...|..+|. ....+.|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57788888775542 123445888875
No 162
>PHA02692 hypothetical protein; Provisional
Probab=57.78 E-value=39 Score=22.53 Aligned_cols=7 Identities=14% Similarity=0.117 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 042698 36 NAVIVLS 42 (203)
Q Consensus 36 ~~iiii~ 42 (203)
+..++++
T Consensus 45 ~~~~ii~ 51 (70)
T PHA02692 45 WTTVFLI 51 (70)
T ss_pred hHHHHHH
Confidence 3333333
No 163
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=57.61 E-value=5.4 Score=25.97 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=18.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWL 144 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl 144 (203)
...|.+|...|.--..-.....||++|+..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 467999999996543334445699999999886544
No 164
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=57.23 E-value=8.5 Score=33.27 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=30.1
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC---CCccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS---SCPKC 153 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~---~CP~C 153 (203)
..|++=-+.-.+...-..+. |||+.-+.-+..--++.. .||.|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 46888665555545556666 999999999888444322 49999
No 165
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=57.11 E-value=43 Score=22.16 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 042698 47 GIICSLGLHFLIRCILVS 64 (203)
Q Consensus 47 ~~i~~l~~~~~~~~~~rr 64 (203)
+++++.++.++.+..++|
T Consensus 8 i~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 8 IIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444444444444444
No 166
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=56.22 E-value=46 Score=23.85 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 37 AVIVLSVLVCGIICSLGLHFLIRCI 61 (203)
Q Consensus 37 ~iiii~il~~~~i~~l~~~~~~~~~ 61 (203)
+-+++++++.++++.+++.+.++|-
T Consensus 17 W~~LVGVv~~al~~SlLIalaaKC~ 41 (102)
T PF15176_consen 17 WPFLVGVVVTALVTSLLIALAAKCP 41 (102)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHhH
Confidence 3345566666666666666666664
No 167
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=55.92 E-value=18 Score=31.36 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=32.3
Q ss_pred CcCccccCcccCCC-ceeecCCCCccccHhhHHHHHhcCCCCcccccc
Q 042698 110 NECVICLSDFAPGE-RVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHC 156 (203)
Q Consensus 110 ~~CaICl~~~~~~~-~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 156 (203)
.+|+||-+.....+ ...=.+ |++..|..|...-...+..||.||..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~ 296 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKP 296 (327)
T ss_pred CCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCc
Confidence 67999999874433 222344 77777777777766778889999933
No 168
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=55.75 E-value=7.9 Score=21.62 Aligned_cols=19 Identities=21% Similarity=0.488 Sum_probs=11.6
Q ss_pred CCccccHhhHHHHHhcCCCCccccc
Q 042698 131 CNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 131 C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
|||+|-..- ....||+|.+
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCEECCCc------CCCcCcCCCC
Confidence 676655422 3447999965
No 169
>PTZ00370 STEVOR; Provisional
Probab=55.49 E-value=17 Score=31.03 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042698 31 SSLNSNAVIVLSVLVCGIICSLGLHFLIRCILVSW 65 (203)
Q Consensus 31 ~~~~~~~iiii~il~~~~i~~l~~~~~~~~~~rr~ 65 (203)
..|.++-+..++++++++++++++++++|...+.|
T Consensus 252 aaF~Pygiaalvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 252 SAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 34666666666666666777777777777777765
No 170
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=55.25 E-value=17 Score=30.96 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=24.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042698 31 SSLNSNAVIVLSVLVCGIICSLGLHFLIRCILVSW 65 (203)
Q Consensus 31 ~~~~~~~iiii~il~~~~i~~l~~~~~~~~~~rr~ 65 (203)
.-|.++-+..++++++++++++++++++|...+.|
T Consensus 256 aaF~Pcgiaalvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 256 STFLPYGIAALVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33666666666677777777777778888777766
No 171
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=55.19 E-value=5.7 Score=24.56 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=28.0
Q ss_pred CccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 112 CVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 112 CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
|+.|-..+..++.+... -+..||.+|+ .|-.|+..|....
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEcccc--------ccCCCCCccCCCe
Confidence 77888888866555333 6789998775 4778877776553
No 172
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=54.63 E-value=22 Score=25.72 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042698 40 VLSVLVCGIICSLGLHFLI 58 (203)
Q Consensus 40 ii~il~~~~i~~l~~~~~~ 58 (203)
+++++.+++++.+++.++.
T Consensus 3 Ll~il~llLll~l~asl~~ 21 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLA 21 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=54.14 E-value=6.1 Score=37.63 Aligned_cols=37 Identities=22% Similarity=0.491 Sum_probs=30.4
Q ss_pred CCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 122 GERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 122 ~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
+..+..+|.|.-+||.+=++.-..++..||.||.+-.
T Consensus 1041 d~~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1041 DASITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred cchhhhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 3456677889999999988888888999999998754
No 174
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=53.72 E-value=12 Score=23.18 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=25.0
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHh
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR 145 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~ 145 (203)
..|.+|-..|..-..-.....||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 468999888765432233345999999999877643
No 175
>PRK00523 hypothetical protein; Provisional
Probab=53.36 E-value=41 Score=22.59 Aligned_cols=18 Identities=11% Similarity=0.050 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 042698 47 GIICSLGLHFLIRCILVS 64 (203)
Q Consensus 47 ~~i~~l~~~~~~~~~~rr 64 (203)
+++.+++-+|+.|.+.++
T Consensus 15 li~G~~~Gffiark~~~k 32 (72)
T PRK00523 15 LIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444555444
No 176
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=52.65 E-value=16 Score=31.69 Aligned_cols=69 Identities=19% Similarity=0.382 Sum_probs=40.7
Q ss_pred CCHHHHhhcCeEEccCCCCC-CCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccc
Q 042698 86 IKKKALKAFTIVKYSGELKL-PGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 86 ~~~~~~~~lp~~~~~~~~~~-~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
+.+.....+|...+.+.... ...+..|-.|.++.......+- ..|+|.|+.+|=.--=..=..||.|-.
T Consensus 306 LARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C-~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 306 LARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRC-ESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEc-hhccceeeccchHHHHhhhhcCCCcCC
Confidence 34444445565555542221 1233459999777766554444 449999999995432223346999964
No 177
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=52.26 E-value=50 Score=25.79 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042698 43 VLVCGIICSLGLHFLIRCI 61 (203)
Q Consensus 43 il~~~~i~~l~~~~~~~~~ 61 (203)
++++++..+++++|++|.+
T Consensus 99 ~Vl~g~s~l~i~yfvir~~ 117 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTF 117 (163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444
No 178
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.13 E-value=45 Score=22.27 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 41 LSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 41 i~il~~~~i~~l~~~~~~~~~~rr 64 (203)
+++++++++.+++-+|+.|.+..+
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k 31 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKK 31 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444443
No 179
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=51.96 E-value=14 Score=27.04 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=8.0
Q ss_pred hhhhcCCCHHHHhhc
Q 042698 80 PLAKTGIKKKALKAF 94 (203)
Q Consensus 80 ~~~~~~~~~~~~~~l 94 (203)
+..+++.+-+.++++
T Consensus 98 RL~aEgKdIdeLKKi 112 (128)
T PF15145_consen 98 RLTAEGKDIDELKKI 112 (128)
T ss_pred HHHhccCCHHHHHHH
Confidence 344556665555554
No 180
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=50.88 E-value=5.1 Score=34.25 Aligned_cols=6 Identities=0% Similarity=0.130 Sum_probs=0.0
Q ss_pred cCeEEc
Q 042698 94 FTIVKY 99 (203)
Q Consensus 94 lp~~~~ 99 (203)
+|.+..
T Consensus 191 iPvIF~ 196 (290)
T PF05454_consen 191 IPVIFQ 196 (290)
T ss_dssp ------
T ss_pred Cceecc
Confidence 444443
No 181
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=50.09 E-value=31 Score=21.99 Aligned_cols=49 Identities=27% Similarity=0.583 Sum_probs=33.6
Q ss_pred CcCccccCcccCCC-ceeecCCCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 110 NECVICLSDFAPGE-RVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 110 ~~CaICl~~~~~~~-~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
..|-.|-.++..+. ..++.. =...|+.+|.+.-| +..||.|-..++..+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICS-fECTFC~~C~e~~l--~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICS-FECTFCADCAETML--NGVCPNCGGELVRRP 55 (57)
T ss_pred CCccccCCCCCCCCCcceEEe-EeCcccHHHHHHHh--cCcCcCCCCccccCC
Confidence 35777777776655 333322 23679999999965 677999988777653
No 182
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.92 E-value=11 Score=31.59 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=27.8
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHh
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR 145 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~ 145 (203)
.-+.|+.||.++.++ .+++ =||+|..+||.+++.
T Consensus 42 ~FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITP-DGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCC---ccCC-CCeeeeHHHHHHHHH
Confidence 346899999999886 4455 799999999999874
No 183
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=49.41 E-value=13 Score=23.21 Aligned_cols=25 Identities=36% Similarity=0.902 Sum_probs=14.0
Q ss_pred cCCCCccccHhhHHHHHhcCCCCccc
Q 042698 128 LPKCNHGFHVRCIDKWLRSNSSCPKC 153 (203)
Q Consensus 128 l~~C~H~FH~~Ci~~Wl~~~~~CP~C 153 (203)
.+.|||.|...=-++ ......||.|
T Consensus 31 C~~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 31 CPKCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCCCeeEccHhhh-ccCCCCCCCC
Confidence 334777765432222 2455679988
No 185
>PHA02935 Hypothetical protein; Provisional
Probab=49.33 E-value=55 Score=26.69 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=18.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 042698 24 AHPYSSESSLNSNAVIVLSVLVCGIICSLGLHF 56 (203)
Q Consensus 24 ~~~~~s~~~~~~~~iiii~il~~~~i~~l~~~~ 56 (203)
.+.|+...+.+..++++++..+.++++++..+.
T Consensus 301 nndysapmnvdnlimivlitmlsiiiiiivvia 333 (349)
T PHA02935 301 NNDYSAPMNVDNLIMIVLITMLSIIIIIIVVIA 333 (349)
T ss_pred cccccCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 355666667777666666555555444443333
No 186
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=49.29 E-value=11 Score=24.91 Aligned_cols=12 Identities=50% Similarity=1.317 Sum_probs=8.8
Q ss_pred cccHhhHHHHHh
Q 042698 134 GFHVRCIDKWLR 145 (203)
Q Consensus 134 ~FH~~Ci~~Wl~ 145 (203)
.||..|+..|++
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 187
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=48.96 E-value=8.5 Score=24.85 Aligned_cols=16 Identities=19% Similarity=0.769 Sum_probs=11.8
Q ss_pred CCCCcccccccccccc
Q 042698 147 NSSCPKCRHCLIESCK 162 (203)
Q Consensus 147 ~~~CP~CR~~l~~~~~ 162 (203)
...||+|.++.....+
T Consensus 39 ~p~CPlC~s~M~~~~r 54 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGTR 54 (59)
T ss_pred CccCCCcCCcccccee
Confidence 3569999988776543
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=48.82 E-value=14 Score=35.70 Aligned_cols=49 Identities=24% Similarity=0.574 Sum_probs=30.9
Q ss_pred CCCCCCcCccccCcccC---------CCceeecCCCCccccHhhHHHHHhcCCCCccccccc
Q 042698 105 LPGLDNECVICLSDFAP---------GERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCL 157 (203)
Q Consensus 105 ~~~~~~~CaICl~~~~~---------~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 157 (203)
....+..|+-|-..|-. +...-.++.|+|.-|.+=|- +...||+|...+
T Consensus 1127 i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1127 IDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSME 1184 (1189)
T ss_pred CCccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChh
Confidence 34556678777777641 11233456699998875543 356799997654
No 189
>PF15179 Myc_target_1: Myc target protein 1
Probab=48.75 E-value=53 Score=26.18 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=7.6
Q ss_pred CCCcccccccccC
Q 042698 189 PLEPEGILRNYEG 201 (203)
Q Consensus 189 ~~~~~~~~~~~~~ 201 (203)
|..=|.++++|.|
T Consensus 182 PPAYeSIIkAF~e 194 (197)
T PF15179_consen 182 PPAYESIIKAFPE 194 (197)
T ss_pred CchHHHHHHhccc
Confidence 4445666666654
No 190
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=48.40 E-value=55 Score=26.17 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=18.1
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHH
Q 042698 30 ESSLNSNAVIVLSVLVCGIICSLGLH 55 (203)
Q Consensus 30 ~~~~~~~~iiii~il~~~~i~~l~~~ 55 (203)
.+.||..-+|.-++|+++++.+++|.
T Consensus 155 ~s~FD~~SFiGGIVL~LGv~aI~ff~ 180 (186)
T PF05283_consen 155 KSTFDAASFIGGIVLTLGVLAIIFFL 180 (186)
T ss_pred CCCCchhhhhhHHHHHHHHHHHHHHH
Confidence 46799888877777777766555443
No 191
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=48.19 E-value=35 Score=26.22 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=13.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 32 SLNSNAVIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 32 ~~~~~~iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
+++..+++.+.+.+++.+++++|.++-.|..|+
T Consensus 116 gY~nklilaisvtvv~~iliii~CLiei~shr~ 148 (154)
T PF14914_consen 116 GYNNKLILAISVTVVVMILIIIFCLIEICSHRR 148 (154)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444444444444433333333333333333
No 192
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=47.45 E-value=11 Score=34.31 Aligned_cols=48 Identities=21% Similarity=0.598 Sum_probs=31.8
Q ss_pred CCcCccccC-cccCCCceeecCCCCccccHhhHHHHHhc----CC----CCcccccc
Q 042698 109 DNECVICLS-DFAPGERVRILPKCNHGFHVRCIDKWLRS----NS----SCPKCRHC 156 (203)
Q Consensus 109 ~~~CaICl~-~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~----~CP~CR~~ 156 (203)
+..|.+|.. ..-....+..+..|+-.||..|-...... .. .|=+|...
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 345999983 33333456666679999999998776532 11 38888653
No 193
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=46.90 E-value=87 Score=21.93 Aligned_cols=28 Identities=7% Similarity=-0.146 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 042698 37 AVIVLSVLVCGIICSLGLHFL-IRCILVS 64 (203)
Q Consensus 37 ~iiii~il~~~~i~~l~~~~~-~~~~~rr 64 (203)
|.++++++++++++++++.+. .|...||
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 334444444444444444443 3334444
No 194
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=45.42 E-value=16 Score=31.18 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 042698 39 IVLSVLVCGIIC 50 (203)
Q Consensus 39 iii~il~~~~i~ 50 (203)
|++++.++++++
T Consensus 275 IaVG~~La~lvl 286 (306)
T PF01299_consen 275 IAVGAALAGLVL 286 (306)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 195
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=45.29 E-value=27 Score=30.72 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 41 LSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 41 i~il~~~~i~~l~~~~~~~~~~rr 64 (203)
++.++++++++|++ ++++..+|.
T Consensus 313 iaSiIAIvvIVLIM-vIIYLILRY 335 (353)
T TIGR01477 313 IASIIAILIIVLIM-VIIYLILRY 335 (353)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHh
Confidence 33333333444433 444555555
No 196
>PF12669 P12: Virus attachment protein p12 family
Probab=45.25 E-value=26 Score=22.40 Aligned_cols=6 Identities=17% Similarity=0.252 Sum_probs=2.3
Q ss_pred HHHHHh
Q 042698 59 RCILVS 64 (203)
Q Consensus 59 ~~~~rr 64 (203)
|..+|+
T Consensus 18 r~~~k~ 23 (58)
T PF12669_consen 18 RKFIKD 23 (58)
T ss_pred HHHHHH
Confidence 333333
No 197
>PTZ00046 rifin; Provisional
Probab=44.67 E-value=25 Score=30.96 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 40 VLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 40 ii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
+++.++++++++|++ ++++..+|.
T Consensus 317 IiaSiiAIvVIVLIM-vIIYLILRY 340 (358)
T PTZ00046 317 IIASIVAIVVIVLIM-VIIYLILRY 340 (358)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 333344444444433 444555555
No 198
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=44.03 E-value=28 Score=24.65 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 042698 47 GIICSLGLHFLIRCILVS 64 (203)
Q Consensus 47 ~~i~~l~~~~~~~~~~rr 64 (203)
+++++++++.++.|++.|
T Consensus 50 G~iLilIii~Lv~CC~~K 67 (98)
T PF07204_consen 50 GLILILIIIALVCCCRAK 67 (98)
T ss_pred hhhhHHHHHHHHHHhhhh
Confidence 333444444445555544
No 199
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=44.00 E-value=6.7 Score=24.46 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=6.8
Q ss_pred CCccccccccccc
Q 042698 149 SCPKCRHCLIESC 161 (203)
Q Consensus 149 ~CP~CR~~l~~~~ 161 (203)
.||+|.+++.+..
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 6999988887654
No 200
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=43.95 E-value=27 Score=33.11 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 37 AVIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 37 ~iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
+|||+++++.++++++++++++++++|+
T Consensus 269 lWII~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 269 LWIIAGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred eEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence 3344555555555555555555555554
No 201
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.57 E-value=7.3 Score=35.21 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=26.9
Q ss_pred CcCccccCcccCCCce-----eecCCCCccccHhhHHHHHhc
Q 042698 110 NECVICLSDFAPGERV-----RILPKCNHGFHVRCIDKWLRS 146 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v-----~~l~~C~H~FH~~Ci~~Wl~~ 146 (203)
..|+.|...++.+... ... .|+|.||+.|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~-~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSA-SCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccC-CcCCeeceeeecccccc
Confidence 3599999998877622 222 39999999999998644
No 202
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=43.54 E-value=14 Score=30.92 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=30.9
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC--CCccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS--SCPKC 153 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~C 153 (203)
+..|+|=...+..+ ++... |||+|-++=|...+.... .||+=
T Consensus 176 s~rdPis~~~I~nP--viSkk-C~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISKK-CGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhch--hhhcC-cCcchhhhhHHHHhccCceeecccc
Confidence 45688876666664 45554 999999999999987644 48764
No 203
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=43.43 E-value=4.1 Score=34.82 Aligned_cols=38 Identities=26% Similarity=0.593 Sum_probs=29.3
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS 148 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~ 148 (203)
.+|.+|++++..+....... |.-+||..|+-.|+....
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 38999999998755555555 666999999999976644
No 204
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.26 E-value=24 Score=23.09 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=11.6
Q ss_pred CCCCChhHHHHHHHHHHHHHH
Q 042698 30 ESSLNSNAVIVLSVLVCGIIC 50 (203)
Q Consensus 30 ~~~~~~~~iiii~il~~~~i~ 50 (203)
..++++-+|+++++.-+++++
T Consensus 7 ~KGlnPGlIVLlvV~g~ll~f 27 (69)
T PF04689_consen 7 AKGLNPGLIVLLVVAGLLLVF 27 (69)
T ss_pred ccCCCCCeEEeehHHHHHHHH
Confidence 466777766555554444433
No 205
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=43.15 E-value=67 Score=25.24 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCCChh
Q 042698 21 VTAAHPYSSESSLNSN 36 (203)
Q Consensus 21 ~~~~~~~~s~~~~~~~ 36 (203)
+.+.++..+-..++.+
T Consensus 13 ~~~~~~~~gmp~ld~~ 28 (181)
T PRK13454 13 AGHAASAPGMPQLDFS 28 (181)
T ss_pred cccccCCCCCCCCcHH
Confidence 3334444444444443
No 206
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=43.10 E-value=57 Score=22.10 Aligned_cols=7 Identities=29% Similarity=1.089 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 042698 56 FLIRCIL 62 (203)
Q Consensus 56 ~~~~~~~ 62 (203)
+++||.+
T Consensus 44 liVRCfr 50 (81)
T PF11057_consen 44 LIVRCFR 50 (81)
T ss_pred HHHHHHH
Confidence 3445544
No 207
>PHA03049 IMV membrane protein; Provisional
Probab=42.93 E-value=81 Score=20.80 Aligned_cols=20 Identities=20% Similarity=0.359 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042698 45 VCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 45 ~~~~i~~l~~~~~~~~~~rr 64 (203)
+++++++.++.++.+..++|
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33344444444555555555
No 208
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=42.28 E-value=18 Score=29.12 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=19.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 31 SSLNSNAVIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 31 ~~~~~~~iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
.+.+.-.+|.|.|.++++|.+|+..++++.++-+
T Consensus 94 ~Glavh~~iTITvSlImViaAliTtlvlK~C~~~ 127 (205)
T PF15298_consen 94 SGLAVHQIITITVSLIMVIAALITTLVLKNCCAQ 127 (205)
T ss_pred CCCCceEEEEEeeehhHHHHHhhhhhhhhhhhhh
Confidence 4555555556666666666666666665555544
No 209
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=41.86 E-value=15 Score=34.78 Aligned_cols=48 Identities=25% Similarity=0.647 Sum_probs=29.5
Q ss_pred CcCccccCcccCCCc-eeecCCCCccccHhhHHHHHhcC-----CCCccccccc
Q 042698 110 NECVICLSDFAPGER-VRILPKCNHGFHVRCIDKWLRSN-----SSCPKCRHCL 157 (203)
Q Consensus 110 ~~CaICl~~~~~~~~-v~~l~~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~~l 157 (203)
.-|.+|-..-...+. +..+..|+-.||..|+..|+..- -.||-||...
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 346666433222221 22333589999999999998532 3588887644
No 210
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=41.56 E-value=7.9 Score=24.37 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=16.1
Q ss_pred CceeecCCCCccccHhhHHHH
Q 042698 123 ERVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 123 ~~v~~l~~C~H~FH~~Ci~~W 143 (203)
+.....+.|+|.|+..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 344556459999999998888
No 211
>PLN02189 cellulose synthase
Probab=41.09 E-value=26 Score=35.07 Aligned_cols=50 Identities=20% Similarity=0.499 Sum_probs=33.7
Q ss_pred CCcCccccCccc---CCCceeecCCCCccccHhhHHHHHh-cCCCCcccccccc
Q 042698 109 DNECVICLSDFA---PGERVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~---~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~ 158 (203)
...|.||-+++. +++.-..+..|+---|..|.+-=.+ .++.||-|+...-
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 357999999975 3334444555777789999943222 3557999987554
No 212
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=41.05 E-value=34 Score=26.14 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 042698 52 LGLHFLIR 59 (203)
Q Consensus 52 l~~~~~~~ 59 (203)
.+++.++|
T Consensus 134 ~giy~~~r 141 (145)
T PF10661_consen 134 GGIYVVLR 141 (145)
T ss_pred HHHHHHHH
Confidence 33333333
No 213
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=40.61 E-value=68 Score=24.69 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 38 VIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 38 iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
.-++.|++.+++.++++++++.++.+|
T Consensus 29 thm~tILiaIvVliiiiivli~lcssR 55 (189)
T PF05568_consen 29 THMYTILIAIVVLIIIIIVLIYLCSSR 55 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444444444333
No 214
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=40.59 E-value=60 Score=28.96 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 042698 44 LVCGIICSLGLHFLI 58 (203)
Q Consensus 44 l~~~~i~~l~~~~~~ 58 (203)
+++++++++++.+++
T Consensus 293 l~i~llL~llLs~Im 307 (386)
T PF05510_consen 293 LIIALLLLLLLSYIM 307 (386)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333333333
No 215
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=40.44 E-value=68 Score=31.31 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 38 VIVLSVLVCGIICSLGLHFLIRCILV 63 (203)
Q Consensus 38 iiii~il~~~~i~~l~~~~~~~~~~r 63 (203)
+++++||...++++++++.++.|++|
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCr 298 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCR 298 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555444444444444333333
No 216
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=40.12 E-value=3.3 Score=35.13 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=19.4
Q ss_pred CCcCccccCcccCCCceeecC--CCCccccHhhHHHHHhcCCCCccccc
Q 042698 109 DNECVICLSDFAPGERVRILP--KCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
...|+||-..-.-. .++.-. +=.|.+|.-|-..|--....||.|-.
T Consensus 172 ~g~CPvCGs~P~~s-~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLS-VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEE-EEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceE-EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 36899998774321 111110 12466677788889777778999954
No 217
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=40.09 E-value=37 Score=29.48 Aligned_cols=53 Identities=23% Similarity=0.520 Sum_probs=35.0
Q ss_pred CCCCcCccccCccc---------------CCC-ceeecCCCCccccHhhHHHHHhc---------CCCCcccccccccc
Q 042698 107 GLDNECVICLSDFA---------------PGE-RVRILPKCNHGFHVRCIDKWLRS---------NSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~---------------~~~-~v~~l~~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~l~~~ 160 (203)
..+.+|++|+..-. .+. .-...| |||+--++-..-|-+. +..||.|-..+..+
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 34678999997621 011 112345 9999888899999763 23599997766543
No 218
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=39.95 E-value=19 Score=25.54 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 143 (203)
...|.||......--+.... .|...||..|...+
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~-~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHP-GCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCCceeEEcCCC-CCCcCCCHHHHHHC
Confidence 45899998873221122222 38999999998663
No 219
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=39.41 E-value=20 Score=19.50 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=18.3
Q ss_pred cCccccCcccCCCceeecCCCCccccHhh
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRC 139 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~C 139 (203)
.|.+|..+..... .-....|.-.+|..|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 5889977765543 444445777788776
No 220
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=38.50 E-value=1.3e+02 Score=24.75 Aligned_cols=8 Identities=13% Similarity=0.280 Sum_probs=4.8
Q ss_pred HHHHHHHh
Q 042698 57 LIRCILVS 64 (203)
Q Consensus 57 ~~~~~~rr 64 (203)
+.+|+.||
T Consensus 85 l~rwL~rR 92 (219)
T PRK13415 85 LVKWLNKR 92 (219)
T ss_pred HHHHHHHh
Confidence 34566666
No 221
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=38.38 E-value=20 Score=29.30 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=26.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042698 29 SESSLNSNAVIVLSVLVCGIICSLGLHFLIRCILVSWSR 67 (203)
Q Consensus 29 s~~~~~~~~iiii~il~~~~i~~l~~~~~~~~~~rr~~~ 67 (203)
.....+.-.+.+++.++.+++.+++++++....++++++
T Consensus 28 ~~~~~~~d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~ 66 (221)
T PF08374_consen 28 PASSRSKDYVKIMIAIVAGIMTVILVIFIVVLVRYCRQS 66 (221)
T ss_pred CCccccccceeeeeeeecchhhhHHHHHHHHHHHHHhhc
Confidence 344455556667777778888888888887777667633
No 222
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=38.17 E-value=11 Score=25.27 Aligned_cols=40 Identities=23% Similarity=0.500 Sum_probs=19.8
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|+.|..++.... +|.++..|-.. +.....||-|...+.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 36999988865443 44444445444 355667999987765
No 223
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=38.09 E-value=52 Score=21.82 Aligned_cols=9 Identities=11% Similarity=0.028 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 042698 40 VLSVLVCGI 48 (203)
Q Consensus 40 ii~il~~~~ 48 (203)
.|+++..++
T Consensus 35 aIGvi~gi~ 43 (68)
T PF04971_consen 35 AIGVIGGIF 43 (68)
T ss_pred hHHHHHHHH
Confidence 344444333
No 224
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=37.67 E-value=48 Score=21.35 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=26.1
Q ss_pred CCCcCccccCcccC--CCceeecCCCCccccHhhHHHH
Q 042698 108 LDNECVICLSDFAP--GERVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 108 ~~~~CaICl~~~~~--~~~v~~l~~C~H~FH~~Ci~~W 143 (203)
....|+.|-..... ......++.||+.+|.+-...+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA~ 64 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAAR 64 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHHH
Confidence 34579999888777 4566667779999888765443
No 225
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=37.24 E-value=1.1e+02 Score=22.79 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 042698 50 CSLGLHFLIRCILVSW 65 (203)
Q Consensus 50 ~~l~~~~~~~~~~rr~ 65 (203)
+++++++...|+.||+
T Consensus 27 lVl~lI~~~aWLlkR~ 42 (124)
T PRK11486 27 GIIALILAAAWLVKRL 42 (124)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3334444555666664
No 226
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=36.99 E-value=40 Score=25.32 Aligned_cols=13 Identities=15% Similarity=-0.061 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHh
Q 042698 52 LGLHFLIRCILVS 64 (203)
Q Consensus 52 l~~~~~~~~~~rr 64 (203)
.++.+++++++|+
T Consensus 117 ~~~~~~yr~~r~~ 129 (139)
T PHA03099 117 CCLLSVYRFTRRT 129 (139)
T ss_pred HHHHhhheeeecc
Confidence 3333333333333
No 227
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=36.91 E-value=23 Score=24.02 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=21.8
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHH
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDK 142 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 142 (203)
..|.+|-...-..-....- .|.-.||..|...
T Consensus 37 ~~C~~C~~~~Ga~i~C~~~-~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKGGACIGCSHP-GCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCCCeEEEEeCC-CCCcEEChHHHcc
Confidence 5799998663332233333 4999999999865
No 228
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=36.89 E-value=30 Score=29.23 Aligned_cols=21 Identities=33% Similarity=0.822 Sum_probs=15.8
Q ss_pred cccHhhHHHH-HhcCCCCcccc
Q 042698 134 GFHVRCIDKW-LRSNSSCPKCR 154 (203)
Q Consensus 134 ~FH~~Ci~~W-l~~~~~CP~CR 154 (203)
.-|++|++.| +..++.||-=|
T Consensus 56 RGHrdCFEK~HlIanQ~~prsk 77 (285)
T PF06937_consen 56 RGHRDCFEKYHLIANQDCPRSK 77 (285)
T ss_pred cchHHHHHHHHHHHcCCCCccc
Confidence 4579999999 45678898443
No 229
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.70 E-value=77 Score=29.03 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 042698 35 SNAVIVLSVLVCGIICSL 52 (203)
Q Consensus 35 ~~~iiii~il~~~~i~~l 52 (203)
.+.+++++++++++++++
T Consensus 132 ~~~~ii~~~~~~~~~~~~ 149 (513)
T KOG2052|consen 132 ELVAIILGPVVFLLLIAI 149 (513)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333445555444443333
No 230
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=36.34 E-value=15 Score=31.28 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=24.5
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHH
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDK 142 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 142 (203)
..|.||+.+..+.+.+--- -|...||.-|+..
T Consensus 315 ~lC~IC~~P~~E~E~~FCD-~CDRG~HT~CVGL 346 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCD-VCDRGPHTLCVGL 346 (381)
T ss_pred HhhhccCCcccchheeccc-cccCCCCcccccc
Confidence 5699999887776655444 4999999999854
No 231
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=36.00 E-value=24 Score=30.09 Aligned_cols=28 Identities=7% Similarity=-0.100 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042698 38 VIVLSVLVCGIICSLGLHFLIRCILVSW 65 (203)
Q Consensus 38 iiii~il~~~~i~~l~~~~~~~~~~rr~ 65 (203)
.++-+++.+++.+++++.++.+++.||+
T Consensus 271 ~~vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHhheeEecc
Confidence 4455556666655666666666666663
No 232
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=35.58 E-value=1.3e+02 Score=20.76 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=11.1
Q ss_pred ChhhhcCCCHHHHhhcCeEE
Q 042698 79 TPLAKTGIKKKALKAFTIVK 98 (203)
Q Consensus 79 ~~~~~~~~~~~~~~~lp~~~ 98 (203)
....+..+...+++.+-.+.
T Consensus 45 ds~F~D~lTpDQVrAlHRlv 64 (92)
T PHA02681 45 ASSFEDKMTDDQVRAFHALV 64 (92)
T ss_pred CchhhccCCHHHHHHHHHHH
Confidence 34555666666666654443
No 233
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=35.58 E-value=11 Score=29.04 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 042698 36 NAVIVLSVLVCGIICSLGLHFLI 58 (203)
Q Consensus 36 ~~iiii~il~~~~i~~l~~~~~~ 58 (203)
.+.+.|++.+++++++.++.+++
T Consensus 9 sv~i~igi~Ll~lLl~cgiGcvw 31 (158)
T PF11770_consen 9 SVAISIGISLLLLLLLCGIGCVW 31 (158)
T ss_pred hHHHHHHHHHHHHHHHHhcceEE
Confidence 34445555555454444444443
No 234
>PHA03240 envelope glycoprotein M; Provisional
Probab=35.51 E-value=59 Score=26.69 Aligned_cols=7 Identities=14% Similarity=0.539 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 042698 38 VIVLSVL 44 (203)
Q Consensus 38 iiii~il 44 (203)
+|+++++
T Consensus 215 WIiilII 221 (258)
T PHA03240 215 WIFIAII 221 (258)
T ss_pred HHHHHHH
Confidence 3333333
No 235
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=35.48 E-value=22 Score=24.93 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=29.8
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
..|.-|...+.--|.+. |-.|+..+..|..|++++...
T Consensus 34 S~C~~C~~~L~~~~lIP-------------i~S~l~lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIP-------------ILSYLLLRGRCRYCGAPIPPR 71 (92)
T ss_pred CcCcCCCCcCcccccch-------------HHHHHHhCCCCcccCCCCChH
Confidence 57999988887765554 445999999999999988754
No 236
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=35.10 E-value=16 Score=26.07 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=12.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHH
Q 042698 31 SSLNSNAVIVLSVLVCGIICSL 52 (203)
Q Consensus 31 ~~~~~~~iiii~il~~~~i~~l 52 (203)
+..+..++.+++++++++++.+
T Consensus 59 ~~~~iili~lls~v~IlVily~ 80 (101)
T PF06024_consen 59 NNGNIILISLLSFVCILVILYA 80 (101)
T ss_pred ccccchHHHHHHHHHHHHHHhh
Confidence 3345555666666665555443
No 237
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=35.06 E-value=54 Score=24.72 Aligned_cols=24 Identities=13% Similarity=-0.057 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 40 VLSVLVCGIICSLGLHFLIRCILV 63 (203)
Q Consensus 40 ii~il~~~~i~~l~~~~~~~~~~r 63 (203)
..+..++++++++++++++...+|
T Consensus 20 a~GWwll~~lll~~~~~~~~~~~r 43 (146)
T PF14316_consen 20 APGWWLLLALLLLLLILLLWRLWR 43 (146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333
No 238
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=34.96 E-value=34 Score=31.41 Aligned_cols=40 Identities=25% Similarity=0.485 Sum_probs=23.7
Q ss_pred CcCccccCcccCCCc-eeecCCCC-ccccHhhHHHHHhcCCCCccccccccccccc
Q 042698 110 NECVICLSDFAPGER-VRILPKCN-HGFHVRCIDKWLRSNSSCPKCRHCLIESCKK 163 (203)
Q Consensus 110 ~~CaICl~~~~~~~~-v~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 163 (203)
..|+-||+++...+. ..... |. +.| .||.|-..|.-...+
T Consensus 27 ~yCp~CL~~~p~~e~~~~~nr-C~r~Cf-------------~CP~C~~~L~~~~~~ 68 (483)
T PF05502_consen 27 YYCPNCLFEVPSSEARSEKNR-CSRNCF-------------DCPICFSPLSVRASD 68 (483)
T ss_pred eECccccccCChhhheeccce-eccccc-------------cCCCCCCcceeEecc
Confidence 468888888765432 12222 54 443 389998877755444
No 239
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=34.54 E-value=14 Score=38.33 Aligned_cols=48 Identities=27% Similarity=0.570 Sum_probs=37.1
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC----CCccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS----SCPKCRHCL 157 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~l 157 (203)
...|-+|+......+++.-. .|.-.||.-|+..-+..-+ .||-||..-
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 45799999998775555444 4999999999999875433 599998765
No 240
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=34.36 E-value=70 Score=22.74 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=11.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHH
Q 042698 27 YSSESSLNSNAVIVLSVLVCGI 48 (203)
Q Consensus 27 ~~s~~~~~~~~iiii~il~~~~ 48 (203)
|.-.+.++..++++++++.+.+
T Consensus 14 Y~~~~d~~~~Wl~~i~~~~v~~ 35 (97)
T PF04834_consen 14 YDKKSDMPNYWLYAIGIVLVFC 35 (97)
T ss_pred cccCCCCCHHHHHHHHHHHHHH
Confidence 3445667666655555544333
No 241
>PRK05978 hypothetical protein; Provisional
Probab=34.35 E-value=24 Score=27.18 Aligned_cols=28 Identities=21% Similarity=0.602 Sum_probs=20.6
Q ss_pred cCCC--CccccHhhHHHHHhcCCCCcccccccccc
Q 042698 128 LPKC--NHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 128 l~~C--~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
+|.| |+.|+ .+++.+..||.|-.++...
T Consensus 36 CP~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 36 CPACGEGKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred CCCCCCCcccc-----cccccCCCccccCCccccC
Confidence 3345 47886 5888999999997776654
No 242
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=34.09 E-value=19 Score=19.40 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=7.0
Q ss_pred CCcccccccccccc
Q 042698 149 SCPKCRHCLIESCK 162 (203)
Q Consensus 149 ~CP~CR~~l~~~~~ 162 (203)
+||.|-+.+...++
T Consensus 1 ~CP~C~s~l~~~~~ 14 (28)
T PF03119_consen 1 TCPVCGSKLVREEG 14 (28)
T ss_dssp B-TTT--BEEE-CC
T ss_pred CcCCCCCEeEcCCC
Confidence 48999888885433
No 243
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=33.93 E-value=2e+02 Score=23.86 Aligned_cols=29 Identities=21% Similarity=0.505 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042698 39 IVLSVLVCGIICSLGLHFLIRCILVSWSR 67 (203)
Q Consensus 39 iii~il~~~~i~~l~~~~~~~~~~rr~~~ 67 (203)
+++-++++++++.+.++.+...++..|+.
T Consensus 189 vilpvvIaliVitl~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 189 VILPVVIALIVITLSVFTLVGLYRMCWKT 217 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44555556666666677777777777654
No 244
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=33.35 E-value=29 Score=28.85 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=18.6
Q ss_pred CcCccccCcccCCCceeecCCCCccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGF 135 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~F 135 (203)
..|++|...+...+.--.+. .+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 36999999997655544555 68888
No 245
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=33.18 E-value=76 Score=22.77 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=18.3
Q ss_pred CccccHhhHHHHHhc---------CCCCccccc
Q 042698 132 NHGFHVRCIDKWLRS---------NSSCPKCRH 155 (203)
Q Consensus 132 ~H~FH~~Ci~~Wl~~---------~~~CP~CR~ 155 (203)
.=.|+..||..+... +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 677999999888742 124999986
No 246
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=33.15 E-value=30 Score=25.18 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=27.8
Q ss_pred CCCcCccccCcccCC--CceeecCCCCccccHhhHHHHHhcCC--CCccccc
Q 042698 108 LDNECVICLSDFAPG--ERVRILPKCNHGFHVRCIDKWLRSNS--SCPKCRH 155 (203)
Q Consensus 108 ~~~~CaICl~~~~~~--~~v~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~ 155 (203)
++..|++|..+|.-- .. .....|+|.++..|-.. ..... -|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~-~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG-RVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC-EEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCC-CcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 456899999987532 23 44455999999988765 11122 2777753
No 247
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=32.88 E-value=75 Score=29.45 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042698 39 IVLSVLVCGIICSLGLHFLIRC 60 (203)
Q Consensus 39 iii~il~~~~i~~l~~~~~~~~ 60 (203)
+++++++++++++++++++.|.
T Consensus 472 ~Il~~l~i~~~~~~~~i~~~~~ 493 (507)
T PF07245_consen 472 IILGFLIIGILIFVLLIFICRS 493 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 248
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=32.76 E-value=73 Score=22.95 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=4.6
Q ss_pred ChhHHHHHHHHH
Q 042698 34 NSNAVIVLSVLV 45 (203)
Q Consensus 34 ~~~~iiii~il~ 45 (203)
...+++++++++
T Consensus 53 ~~~~~~~~~w~~ 64 (103)
T PF11027_consen 53 NSMFMMMMLWMV 64 (103)
T ss_pred ccHHHHHHHHHH
Confidence 333443433333
No 249
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=32.18 E-value=22 Score=20.41 Aligned_cols=31 Identities=26% Similarity=0.622 Sum_probs=18.5
Q ss_pred ecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 127 ILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 127 ~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
+.+.||++||..=-- -+....|..|-..|..
T Consensus 3 ~C~~Cg~~Yh~~~~p--P~~~~~Cd~cg~~L~q 33 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNP--PKVEGVCDNCGGELVQ 33 (36)
T ss_dssp EETTTTEEEETTTB----SSTTBCTTTTEBEBE
T ss_pred CcCCCCCccccccCC--CCCCCccCCCCCeeEe
Confidence 455699999942110 0234469888776654
No 250
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=32.07 E-value=1.8e+02 Score=20.73 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=13.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 30 ESSLNSNAVIVLSVLVCGIICSLGLHFLIRCI 61 (203)
Q Consensus 30 ~~~~~~~~iiii~il~~~~i~~l~~~~~~~~~ 61 (203)
+.++.+|-|++|. ++.+++.+-++.-++.|.
T Consensus 12 sGsL~PWeIfLIt-LasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 12 SGSLKPWEIFLIT-LASVVVAVGLFAGLFFCV 42 (106)
T ss_pred CCCccchHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 4556666554333 333333333333344444
No 251
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=31.90 E-value=82 Score=25.14 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=27.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042698 31 SSLNSNAVIVLSVLVCGIICSLGLHFLIRCILVSWS 66 (203)
Q Consensus 31 ~~~~~~~iiii~il~~~~i~~l~~~~~~~~~~rr~~ 66 (203)
++.+..++++.++++++++++++---+.|+..|.++
T Consensus 9 sGv~vvlv~a~g~l~~vllfIfaKRQI~Rf~lrsrr 44 (186)
T PF07406_consen 9 SGVNVVLVIAYGSLVFVLLFIFAKRQIMRFALRSRR 44 (186)
T ss_pred cceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456677788888888888888888788888877644
No 252
>PLN02436 cellulose synthase A
Probab=31.12 E-value=48 Score=33.47 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=33.2
Q ss_pred CCcCccccCccc---CCCceeecCCCCccccHhhHHHHHh-cCCCCcccccccc
Q 042698 109 DNECVICLSDFA---PGERVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~---~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~ 158 (203)
...|.||-|++. +++.-..+..|+---|..|.+-=.+ .++.||-|+...-
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 347999999974 3344444445666689999943222 3557999987554
No 253
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=31.07 E-value=50 Score=24.99 Aligned_cols=14 Identities=36% Similarity=0.728 Sum_probs=11.0
Q ss_pred CCCccccccccccc
Q 042698 148 SSCPKCRHCLIESC 161 (203)
Q Consensus 148 ~~CP~CR~~l~~~~ 161 (203)
..||.|...+....
T Consensus 124 f~Cp~Cg~~l~~~d 137 (147)
T smart00531 124 FTCPRCGEELEEDD 137 (147)
T ss_pred EECCCCCCEEEEcC
Confidence 56999999887653
No 254
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=31.02 E-value=1.6e+02 Score=22.36 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 042698 46 CGIICSLGLHFLIRCILVSW 65 (203)
Q Consensus 46 ~~~i~~l~~~~~~~~~~rr~ 65 (203)
..++++++++++..|..||.
T Consensus 29 gsL~~iL~lil~~~wl~kr~ 48 (137)
T COG3190 29 GSLILILALILFLAWLVKRL 48 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443
No 255
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=30.83 E-value=25 Score=30.89 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=16.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 31 SSLNSNAVIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 31 ~~~~~~~iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
..|+..+++++++.+.+-++++++.-++-|++|+
T Consensus 313 d~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~ 346 (350)
T PF15065_consen 313 DSFSPLVIMIMAVGLGVPLLLLILGGLYVCLRRR 346 (350)
T ss_pred cchhHHHHHHHHHHhhHHHHHHHHhhheEEEecc
Confidence 3445555545444444444444444444454444
No 256
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=30.79 E-value=1.8e+02 Score=19.91 Aligned_cols=26 Identities=4% Similarity=0.166 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 39 IVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 39 iii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
++.++++.=+++.+++....+++-|.
T Consensus 35 ~LaGiV~~D~vlTLLIv~~vy~car~ 60 (79)
T PF07213_consen 35 LLAGIVAADAVLTLLIVLVVYYCARP 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44455555444444444444444443
No 257
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=30.68 E-value=1.8e+02 Score=23.07 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 042698 15 PLNEQPVTAAHPYSSESSLNSNAVIVLSVLVCGIICSLGLHFLI 58 (203)
Q Consensus 15 ~~~~~p~~~~~~~~s~~~~~~~~iiii~il~~~~i~~l~~~~~~ 58 (203)
+.+|+++.... ++.++++.|.+.+.+.++++.+..+.+++.
T Consensus 138 slH~~~~~~~~---~~~~~~~~m~~~l~~~~~~~~ll~~~l~~~ 178 (184)
T TIGR01191 138 TLHQPASITRF---GSPSIHVSMLIPLLLMFAGFLLLFLALLLL 178 (184)
T ss_pred ccCCCcccCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666654321 345688888777777666655444333333
No 258
>PF15353 HECA: Headcase protein family homologue
Probab=30.63 E-value=31 Score=24.97 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=12.4
Q ss_pred CCccccHhhHHHHH
Q 042698 131 CNHGFHVRCIDKWL 144 (203)
Q Consensus 131 C~H~FH~~Ci~~Wl 144 (203)
.++..|.+|++.|=
T Consensus 40 ~~~~MH~~CF~~wE 53 (107)
T PF15353_consen 40 FGQYMHRECFEKWE 53 (107)
T ss_pred CCCchHHHHHHHHH
Confidence 47999999999994
No 259
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=30.60 E-value=26 Score=32.79 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=24.1
Q ss_pred CCCCcCccccCcccC-----C------CceeecCCCCccccHhhHHHH
Q 042698 107 GLDNECVICLSDFAP-----G------ERVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 107 ~~~~~CaICl~~~~~-----~------~~v~~l~~C~H~FH~~Ci~~W 143 (203)
+....|+||.|.|+. . +.|.+. =|-+||..|+..=
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec--cCceeeccccchH
Confidence 345679999999973 1 123322 4789999999774
No 260
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=30.56 E-value=30 Score=26.19 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=17.0
Q ss_pred ecCCCCccccHhhHHHHHhcCCCCccccccc
Q 042698 127 ILPKCNHGFHVRCIDKWLRSNSSCPKCRHCL 157 (203)
Q Consensus 127 ~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 157 (203)
.++.|||+|+- -+.-||.|.++.
T Consensus 31 kC~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 31 KCKKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred EcCCCCeEEcC--------CcccCCCCCCCC
Confidence 45569999984 345699998874
No 261
>PLN02195 cellulose synthase A
Probab=30.53 E-value=59 Score=32.49 Aligned_cols=50 Identities=14% Similarity=0.307 Sum_probs=34.6
Q ss_pred CCCcCccccCcccCC---CceeecCCCCccccHhhHHHHHh--cCCCCcccccccc
Q 042698 108 LDNECVICLSDFAPG---ERVRILPKCNHGFHVRCIDKWLR--SNSSCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~~---~~v~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~l~ 158 (203)
....|.||-+++..+ +.-..+..|+---|+.|. ++=+ .++.||-|+...-
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCccc
Confidence 345799999987533 333444457777899998 4433 3557999998776
No 262
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=30.43 E-value=81 Score=21.55 Aligned_cols=50 Identities=24% Similarity=0.490 Sum_probs=19.7
Q ss_pred CCcCccccCcccC---CCceeecCCCCccccHhhHHHHHh-cCCCCcccccccc
Q 042698 109 DNECVICLSDFAP---GERVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~~---~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~ 158 (203)
...|-||-+++.. ++.-.....|+--.++.|.+-=.+ .++.||-|+....
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 4579999999753 232233334777778888875544 4567999986554
No 263
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=30.18 E-value=27 Score=28.96 Aligned_cols=41 Identities=32% Similarity=0.506 Sum_probs=30.2
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCC--Ccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSS--CPK 152 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~--CP~ 152 (203)
+..|+|=+.++..+ +... .|+|.|-.+-|...++...+ ||.
T Consensus 189 ~nrCpitl~p~~~p--ils~-kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP--ILSS-KCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH--HHHh-hhcccccHHHHHHHhcCCceeecch
Confidence 45799988776654 3334 49999999999999985544 663
No 264
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=30.06 E-value=69 Score=24.92 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 042698 43 VLVCGIICSLGLHFLIRCILVSWS 66 (203)
Q Consensus 43 il~~~~i~~l~~~~~~~~~~rr~~ 66 (203)
.++++++++++++++++++-+++.
T Consensus 12 ~i~iGl~~f~iYyfvF~flI~kfn 35 (161)
T PRK09702 12 QIAIGLCFTLLYFVVFRTLILQFN 35 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444444555555666666653
No 265
>PTZ00234 variable surface protein Vir12; Provisional
Probab=30.05 E-value=1e+02 Score=28.01 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=11.6
Q ss_pred CChhHH--HHHHHHHHHHHHHHHHH
Q 042698 33 LNSNAV--IVLSVLVCGIICSLGLH 55 (203)
Q Consensus 33 ~~~~~i--iii~il~~~~i~~l~~~ 55 (203)
+++.++ ||+++.++++|++|++.
T Consensus 359 ~dSn~~rniim~~ailGtifFlfyy 383 (433)
T PTZ00234 359 LKSEYFRHSIVGASIIGVLVFLFFF 383 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 444444 55555555555544443
No 266
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=29.94 E-value=66 Score=22.29 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=9.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHH
Q 042698 31 SSLNSNAVIVLSVLVCGIICSLGL 54 (203)
Q Consensus 31 ~~~~~~~iiii~il~~~~i~~l~~ 54 (203)
.+|--.+++++..+++.+++++++
T Consensus 30 ~sfirdFvLVic~~lVfVii~lFi 53 (84)
T PF06143_consen 30 RSFIRDFVLVICCFLVFVIIVLFI 53 (84)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444443333333333
No 267
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=29.92 E-value=22 Score=26.52 Aligned_cols=25 Identities=24% Similarity=0.090 Sum_probs=2.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 042698 33 LNSNAVIVLSVLVCGIICSLGLHFL 57 (203)
Q Consensus 33 ~~~~~iiii~il~~~~i~~l~~~~~ 57 (203)
|...+.|..+++.+++++.++..++
T Consensus 75 ~~l~~pi~~sal~v~lVl~llsg~l 99 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLVLALLSGFL 99 (129)
T ss_dssp SSSS---------------------
T ss_pred cceehhhhhhHHHHHHHHHHHHHHH
Confidence 6655555555555554444433333
No 268
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=29.88 E-value=52 Score=33.19 Aligned_cols=49 Identities=27% Similarity=0.589 Sum_probs=32.6
Q ss_pred CCcCccccCcccC---CCceeecCCCCccccHhhHHHHHh--cCCCCcccccccc
Q 042698 109 DNECVICLSDFAP---GERVRILPKCNHGFHVRCIDKWLR--SNSSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~~---~~~v~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~l~ 158 (203)
...|-||-|++.. ++.-..+..|+---|..|.+ +=+ .++.||-|+...-
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 3479999999753 33333444466668999983 333 3567999987554
No 269
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=29.78 E-value=85 Score=20.57 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 042698 56 FLIRCILVS 64 (203)
Q Consensus 56 ~~~~~~~rr 64 (203)
|+.|.+.++
T Consensus 16 f~ar~~~~k 24 (64)
T PF03672_consen 16 FIARKYMEK 24 (64)
T ss_pred HHHHHHHHH
Confidence 334444444
No 270
>PRK11827 hypothetical protein; Provisional
Probab=29.61 E-value=19 Score=23.34 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=14.7
Q ss_pred HHHHhcCCCCcccccccccc
Q 042698 141 DKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 141 ~~Wl~~~~~CP~CR~~l~~~ 160 (203)
+.||..--.||.|+..+...
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 35666667799999888753
No 271
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=29.05 E-value=32 Score=24.98 Aligned_cols=25 Identities=24% Similarity=0.471 Sum_probs=16.2
Q ss_pred CcCccccCcccCCC-ceeecCCCCcc
Q 042698 110 NECVICLSDFAPGE-RVRILPKCNHG 134 (203)
Q Consensus 110 ~~CaICl~~~~~~~-~v~~l~~C~H~ 134 (203)
..|+-|-.+|.=.+ .+.++|.|+|-
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~E 28 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYE 28 (109)
T ss_pred CcCCcCCCcceEecCCeeECcccccc
Confidence 35899988876332 34556667775
No 272
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=29.02 E-value=81 Score=18.58 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=14.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHH
Q 042698 27 YSSESSLNSNAVIVLSVLVCGIICS 51 (203)
Q Consensus 27 ~~s~~~~~~~~iiii~il~~~~i~~ 51 (203)
+...-..++..++++++.+.+++++
T Consensus 12 d~~giki~P~~Vl~~si~fi~~V~~ 36 (41)
T PF03911_consen 12 DAPGIKIDPKTVLIISIAFIAIVIL 36 (41)
T ss_dssp -S-SS-BSCCHHHHHHHHHHHHHHH
T ss_pred cCCcceeCCeehHHHHHHHHHHHHH
Confidence 4445667788777776666555443
No 273
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=28.98 E-value=58 Score=21.36 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 042698 38 VIVLSVLVCGI 48 (203)
Q Consensus 38 iiii~il~~~~ 48 (203)
++++++++.++
T Consensus 2 WIiiSIvLai~ 12 (66)
T PF07438_consen 2 WIIISIVLAIA 12 (66)
T ss_pred hhhHHHHHHHH
Confidence 34444444433
No 274
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=28.02 E-value=1e+02 Score=25.40 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 042698 51 SLGLHFLI 58 (203)
Q Consensus 51 ~l~~~~~~ 58 (203)
++.+++++
T Consensus 230 FVsMilii 237 (244)
T KOG2678|consen 230 FVSMILII 237 (244)
T ss_pred HHHHHHHH
Confidence 33333333
No 275
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=27.69 E-value=1e+02 Score=19.48 Aligned_cols=8 Identities=38% Similarity=0.729 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 042698 40 VLSVLVCG 47 (203)
Q Consensus 40 ii~il~~~ 47 (203)
+|++++++
T Consensus 7 lIIviVlg 14 (55)
T PF11446_consen 7 LIIVIVLG 14 (55)
T ss_pred HHHHHHHH
Confidence 33333333
No 276
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=27.63 E-value=12 Score=22.05 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=13.4
Q ss_pred CCCccccHhhHHHHHhcCCCCccccc
Q 042698 130 KCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 130 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
.|||.|-..--..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 48887764211000 12345999977
No 277
>PF15069 FAM163: FAM163 family
Probab=27.36 E-value=33 Score=26.20 Aligned_cols=6 Identities=67% Similarity=1.719 Sum_probs=3.5
Q ss_pred CCCccc
Q 042698 148 SSCPKC 153 (203)
Q Consensus 148 ~~CP~C 153 (203)
..||.|
T Consensus 92 ~~CptC 97 (143)
T PF15069_consen 92 SYCPTC 97 (143)
T ss_pred CcCCCC
Confidence 346666
No 278
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=27.31 E-value=24 Score=28.74 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=18.0
Q ss_pred CCccccHhhHHHHHhc---CCCCccccccc
Q 042698 131 CNHGFHVRCIDKWLRS---NSSCPKCRHCL 157 (203)
Q Consensus 131 C~H~FH~~Ci~~Wl~~---~~~CP~CR~~l 157 (203)
|.|.||..=+...-.. ...||.|..-.
T Consensus 195 C~~C~hhngl~~~~ek~~~efiC~~Cn~~n 224 (251)
T COG5415 195 CPQCHHHNGLYRLAEKPIIEFICPHCNHKN 224 (251)
T ss_pred cccccccccccccccccchheecccchhhc
Confidence 8888887655553322 23599998765
No 279
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=27.21 E-value=51 Score=33.27 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=16.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 34 NSNAVIVLSVLVCGIICSLGLHFLIRCI 61 (203)
Q Consensus 34 ~~~~iiii~il~~~~i~~l~~~~~~~~~ 61 (203)
-++++|++++++-+++++++++++++|-
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~G 1003 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKCG 1003 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhcC
Confidence 3555566666666666666666666553
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=26.98 E-value=43 Score=29.62 Aligned_cols=22 Identities=32% Similarity=0.835 Sum_probs=14.8
Q ss_pred CCCccccHhhHHHHHhcCCCCccccc--cccc
Q 042698 130 KCNHGFHVRCIDKWLRSNSSCPKCRH--CLIE 159 (203)
Q Consensus 130 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~--~l~~ 159 (203)
.|||.+.+ | ...||-|.. .+.+
T Consensus 5 ~cg~~~~~-----~---~g~cp~c~~w~~~~e 28 (372)
T cd01121 5 ECGYVSPK-----W---LGKCPECGEWNTLVE 28 (372)
T ss_pred CCCCCCCC-----c---cEECcCCCCceeeee
Confidence 58888774 6 445999965 4444
No 281
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=26.89 E-value=75 Score=29.44 Aligned_cols=21 Identities=33% Similarity=0.146 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042698 41 LSVLVCGIICSLGLHFLIRCI 61 (203)
Q Consensus 41 i~il~~~~i~~l~~~~~~~~~ 61 (203)
+.+++++++.++++++++.+.
T Consensus 471 ~~Il~~l~i~~~~~~~~i~~~ 491 (507)
T PF07245_consen 471 LIILGFLIIGILIFVLLIFIC 491 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333343443333
No 282
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=26.85 E-value=35 Score=29.11 Aligned_cols=13 Identities=23% Similarity=0.146 Sum_probs=5.4
Q ss_pred CCCCChhHHHHHH
Q 042698 30 ESSLNSNAVIVLS 42 (203)
Q Consensus 30 ~~~~~~~~iiii~ 42 (203)
..++.+.++++-+
T Consensus 274 s~~l~piil~IG~ 286 (305)
T PF04639_consen 274 SDSLLPIILIIGG 286 (305)
T ss_pred hhhhhHHHHHHHH
Confidence 3444444443333
No 283
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=26.76 E-value=2.1e+02 Score=22.39 Aligned_cols=25 Identities=8% Similarity=-0.142 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 39 IVLSVLVCGIICSLGLHFLIRCILV 63 (203)
Q Consensus 39 iii~il~~~~i~~l~~~~~~~~~~r 63 (203)
+++++.+.+++++.+++-.+|..++
T Consensus 98 ~~Vl~g~s~l~i~yfvir~~R~r~~ 122 (163)
T PF06679_consen 98 LYVLVGLSALAILYFVIRTFRLRRR 122 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4444444445555555555555553
No 284
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=26.56 E-value=21 Score=30.78 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=27.1
Q ss_pred CCcCccccCcccCCCceeec---CCCCccccHhhHHHHHhcCCCCccccc
Q 042698 109 DNECVICLSDFAPGERVRIL---PKCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l---~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
...|+||-..-... .++.. .+=.+.+|.-|-..|--....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s-~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVAS-MVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhh-hhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45899998774211 11110 112344555667778777778999965
No 285
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.38 E-value=85 Score=22.54 Aligned_cols=22 Identities=27% Similarity=0.080 Sum_probs=12.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHH
Q 042698 28 SSESSLNSNAVIVLSVLVCGII 49 (203)
Q Consensus 28 ~s~~~~~~~~iiii~il~~~~i 49 (203)
.+..+.-+|++++++++.|++.
T Consensus 79 ~~~~~~LPW~LL~lSW~gF~~Y 100 (103)
T PF11169_consen 79 QSRSSWLPWGLLVLSWIGFIAY 100 (103)
T ss_pred cccccchhHHHHHHHHHHHHHH
Confidence 3445555666666666655443
No 286
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.26 E-value=33 Score=24.13 Aligned_cols=13 Identities=38% Similarity=1.160 Sum_probs=11.2
Q ss_pred cccHhhHHHHHhc
Q 042698 134 GFHVRCIDKWLRS 146 (203)
Q Consensus 134 ~FH~~Ci~~Wl~~ 146 (203)
.||..|+..|.+.
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 287
>PF15431 TMEM190: Transmembrane protein 190
Probab=26.12 E-value=1.4e+02 Score=21.80 Aligned_cols=30 Identities=10% Similarity=0.000 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 35 SNAVIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 35 ~~~iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
-.-++.+++...++++.++.+.++.+..||
T Consensus 58 rKHmWaL~wtC~gll~Li~~iclFWWAkRr 87 (134)
T PF15431_consen 58 RKHMWALGWTCGGLLLLICSICLFWWAKRR 87 (134)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 334678888888877777777777777666
No 288
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=26.07 E-value=51 Score=23.66 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=26.3
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHh
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR 145 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~ 145 (203)
.|.||-+++-.++.-..+++ =.-|..|+..=..
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKAS 36 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHHh
Confidence 69999999999887777763 5579999987543
No 289
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=25.78 E-value=1.1e+02 Score=22.76 Aligned_cols=14 Identities=29% Similarity=0.230 Sum_probs=5.6
Q ss_pred HHHHHHHHhhcccc
Q 042698 56 FLIRCILVSWSRLE 69 (203)
Q Consensus 56 ~~~~~~~rr~~~~~ 69 (203)
++.+-+...++|+.
T Consensus 53 LLgrsi~ANRnrK~ 66 (125)
T PF15048_consen 53 LLGRSIQANRNRKM 66 (125)
T ss_pred HHHHHhHhcccccc
Confidence 33444444433333
No 290
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=25.52 E-value=43 Score=24.10 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=13.4
Q ss_pred CCCccccHhhHHHHHhcCCCCccccccc
Q 042698 130 KCNHGFHVRCIDKWLRSNSSCPKCRHCL 157 (203)
Q Consensus 130 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 157 (203)
.|||+|-.. +.-+ -.-||-|-...
T Consensus 7 rCG~vf~~g--~~~i--l~GCp~CG~nk 30 (112)
T COG3364 7 RCGEVFDDG--SEEI--LSGCPKCGCNK 30 (112)
T ss_pred ccccccccc--cHHH--HccCccccchh
Confidence 389988764 2211 12388885433
No 291
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=25.16 E-value=42 Score=26.43 Aligned_cols=31 Identities=23% Similarity=0.574 Sum_probs=20.7
Q ss_pred cCcccc---CcccCCCceeecCCCCccccHhhHHH
Q 042698 111 ECVICL---SDFAPGERVRILPKCNHGFHVRCIDK 142 (203)
Q Consensus 111 ~CaICl---~~~~~~~~v~~l~~C~H~FH~~Ci~~ 142 (203)
.|..|. +....+ .++...+|.-.||+.||-.
T Consensus 1 ~C~~C~~~g~~~~kG-~Lv~CQGCs~sYHk~CLG~ 34 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKG-PLVYCQGCSSSYHKACLGP 34 (175)
T ss_pred CcccccCCCCCccCC-CeEEcCccChHHHhhhcCC
Confidence 367775 333333 4556667999999999954
No 292
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=25.00 E-value=1.2e+02 Score=23.27 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=16.2
Q ss_pred hcCeEEccCCCCCCCCCCcCccccCcccC
Q 042698 93 AFTIVKYSGELKLPGLDNECVICLSDFAP 121 (203)
Q Consensus 93 ~lp~~~~~~~~~~~~~~~~CaICl~~~~~ 121 (203)
+.-.++|+.-... +++-+-++++-+-..
T Consensus 82 kvgvvRYnAF~dm-Gg~LSFslAlLD~~~ 109 (151)
T PF14584_consen 82 KVGVVRYNAFEDM-GGDLSFSLALLDDNN 109 (151)
T ss_pred eEEEEEccCcccc-cccceeeeEEEeCCC
Confidence 3456677774433 345667777766433
No 293
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=24.52 E-value=1.1e+02 Score=23.09 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 37 AVIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 37 ~iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
.-++++.++.++++.+..+++.+...++
T Consensus 118 ~~~~~G~~i~~~v~~~i~Y~l~~~~~~~ 145 (154)
T PF09835_consen 118 LPFLLGSLILGIVLGIISYFLVYFLVRK 145 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666555555544443
No 294
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=24.51 E-value=60 Score=27.17 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=20.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhh
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRC 139 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~C 139 (203)
....+|+.|-. .....-.++.||+.+|.+=
T Consensus 307 ~tS~~C~~cg~---~~~r~~~C~~cg~~~~rD~ 336 (364)
T COG0675 307 YTSKTCPCCGH---LSGRLFKCPRCGFVHDRDV 336 (364)
T ss_pred CCcccccccCC---ccceeEECCCCCCeehhhH
Confidence 34468999988 2223445667999999873
No 295
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=24.49 E-value=1.7e+02 Score=18.22 Aligned_cols=19 Identities=11% Similarity=0.382 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042698 39 IVLSVLVCGIICSLGLHFL 57 (203)
Q Consensus 39 iii~il~~~~i~~l~~~~~ 57 (203)
..++++++.+++++++.++
T Consensus 4 ~tiG~~~~~~~I~~lIgfi 22 (53)
T PF13131_consen 4 LTIGIILFTIFIFFLIGFI 22 (53)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445444444444444443
No 296
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=24.46 E-value=12 Score=27.35 Aligned_cols=6 Identities=0% Similarity=-0.412 Sum_probs=0.0
Q ss_pred HHHHHh
Q 042698 59 RCILVS 64 (203)
Q Consensus 59 ~~~~rr 64 (203)
++++||
T Consensus 45 WYckRR 50 (118)
T PF14991_consen 45 WYCKRR 50 (118)
T ss_dssp ------
T ss_pred eeeeec
Confidence 333444
No 297
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=24.24 E-value=46 Score=29.83 Aligned_cols=27 Identities=26% Similarity=0.259 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 38 VIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 38 iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
+|++++|+.++|++++...++.+.+||
T Consensus 387 ~i~~avl~p~~il~~~~~~~~~~v~rr 413 (436)
T PTZ00208 387 MIILAVLVPAIILAIIAVAFFIMVKRR 413 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeeeec
Confidence 778888888777765444333333333
No 298
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.21 E-value=98 Score=31.25 Aligned_cols=51 Identities=18% Similarity=0.406 Sum_probs=33.5
Q ss_pred CCCcCccccCcccC---CCceeecCCCCccccHhhHHHHHh-cCCCCcccccccc
Q 042698 108 LDNECVICLSDFAP---GERVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~---~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~ 158 (203)
....|.||-|++.. ++.-..+..|+---|..|.+-=.+ .++.||-|+...-
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34579999999753 333344445666689999943222 3557999987655
No 299
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.07 E-value=27 Score=30.06 Aligned_cols=49 Identities=24% Similarity=0.564 Sum_probs=36.9
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
+....|-||...+..... ..+|.|.|...|-..|......||.||..+-
T Consensus 103 ~~~~~~~~~~g~l~vpt~---~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTR---IQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEeccc---ccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 344678888877765422 2249999999999999999899999986443
No 300
>PRK10220 hypothetical protein; Provisional
Probab=23.96 E-value=57 Score=23.75 Aligned_cols=25 Identities=28% Similarity=0.687 Sum_probs=15.1
Q ss_pred CcCccccCcccCCC-ceeecCCCCcc
Q 042698 110 NECVICLSDFAPGE-RVRILPKCNHG 134 (203)
Q Consensus 110 ~~CaICl~~~~~~~-~v~~l~~C~H~ 134 (203)
.-|+-|-.+|.=.+ ...++|.|+|-
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hE 29 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHE 29 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCc
Confidence 45888888875332 34455556664
No 301
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=23.80 E-value=26 Score=31.24 Aligned_cols=50 Identities=20% Similarity=0.434 Sum_probs=0.0
Q ss_pred CCcCccccCccc-------------CC---CceeecCCCCccccHhhHHHHHhc---------CCCCccccccccc
Q 042698 109 DNECVICLSDFA-------------PG---ERVRILPKCNHGFHVRCIDKWLRS---------NSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~-------------~~---~~v~~l~~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~l~~ 159 (203)
..+|++|+..-. .+ -.....| |||+--.+...-|-+. +..||.|-..|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 678999997621 11 1223456 9999888899999652 2359999777653
No 302
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=23.58 E-value=48 Score=21.43 Aligned_cols=11 Identities=45% Similarity=1.068 Sum_probs=7.6
Q ss_pred CCCCccccccc
Q 042698 147 NSSCPKCRHCL 157 (203)
Q Consensus 147 ~~~CP~CR~~l 157 (203)
+..||+|+..+
T Consensus 2 k~~CPlCkt~~ 12 (61)
T PF05715_consen 2 KSLCPLCKTTL 12 (61)
T ss_pred CccCCcccchh
Confidence 34688887766
No 303
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=23.29 E-value=1.6e+02 Score=20.63 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 40 VLSVLVCGIICSLGLHFLIRCILV 63 (203)
Q Consensus 40 ii~il~~~~i~~l~~~~~~~~~~r 63 (203)
+..+++++++.++++.+.+.+..|
T Consensus 37 vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 37 VVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred EeeeeehHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555554
No 304
>PLN02248 cellulose synthase-like protein
Probab=23.19 E-value=1.1e+02 Score=31.16 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=27.4
Q ss_pred eeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 125 VRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 125 v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
+.-+. |++..|.+|...-++....||-|+.....
T Consensus 145 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1135)
T PLN02248 145 LLPCE-CGFKICRDCYIDAVKSGGICPGCKEPYKV 178 (1135)
T ss_pred CCccc-ccchhHHhHhhhhhhcCCCCCCCcccccc
Confidence 33344 88999999999999988899999987743
No 305
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=23.13 E-value=1.6e+02 Score=22.10 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 042698 47 GIICSLGLHFLIRCILVS 64 (203)
Q Consensus 47 ~~i~~l~~~~~~~~~~rr 64 (203)
+++..+....+.+.++++
T Consensus 132 ~~i~Y~l~~~~~~~~r~~ 149 (154)
T PF09835_consen 132 GIISYFLVYFLVRKYRKR 149 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444433333
No 306
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=23.05 E-value=31 Score=26.97 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=5.8
Q ss_pred ceeecCCCCc
Q 042698 124 RVRILPKCNH 133 (203)
Q Consensus 124 ~v~~l~~C~H 133 (203)
.+..+|.|||
T Consensus 92 nl~~CP~CGh 101 (176)
T KOG4080|consen 92 NLNTCPACGH 101 (176)
T ss_pred ccccCcccCc
Confidence 3455556776
No 307
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=22.92 E-value=61 Score=18.77 Aligned_cols=32 Identities=22% Similarity=0.536 Sum_probs=23.2
Q ss_pred CcCccccCcccCCC-ceeecCCCCccccHhhHHH
Q 042698 110 NECVICLSDFAPGE-RVRILPKCNHGFHVRCIDK 142 (203)
Q Consensus 110 ~~CaICl~~~~~~~-~v~~l~~C~H~FH~~Ci~~ 142 (203)
..|.+|.+.+.... .++ ...|+=..|..|...
T Consensus 12 ~~C~~C~~~i~~~~~~~~-C~~C~~~~H~~C~~~ 44 (49)
T smart00109 12 TKCCVCRKSIWGSFQGLR-CSWCKVKCHKKCAEK 44 (49)
T ss_pred CCccccccccCcCCCCcC-CCCCCchHHHHHHhh
Confidence 46999998887532 333 334899999999876
No 308
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=22.88 E-value=2e+02 Score=18.69 Aligned_cols=6 Identities=17% Similarity=0.993 Sum_probs=2.2
Q ss_pred HHHHHH
Q 042698 42 SVLVCG 47 (203)
Q Consensus 42 ~il~~~ 47 (203)
++++++
T Consensus 9 ii~l~A 14 (62)
T PF11120_consen 9 IIILCA 14 (62)
T ss_pred HHHHHH
Confidence 333333
No 309
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=22.60 E-value=2.3e+02 Score=23.19 Aligned_cols=7 Identities=29% Similarity=0.411 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 042698 38 VIVLSVL 44 (203)
Q Consensus 38 iiii~il 44 (203)
+.+++++
T Consensus 128 ~amLICl 134 (227)
T PF05399_consen 128 MAMLICL 134 (227)
T ss_pred hhHHHHH
Confidence 3333333
No 310
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.60 E-value=82 Score=22.38 Aligned_cols=35 Identities=17% Similarity=0.459 Sum_probs=27.4
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS 146 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~ 146 (203)
-.|.||-.++..++.-..++ .-.-|.+|+.+=.++
T Consensus 7 wkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~~~ 41 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESKRK 41 (103)
T ss_pred eeEeeeCCEeeeccEEEEee--CCcchHHHHHHHHhc
Confidence 47999999999998777665 445699999886544
No 311
>PHA03286 envelope glycoprotein E; Provisional
Probab=22.51 E-value=2.8e+02 Score=25.40 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042698 45 VCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 45 ~~~~i~~l~~~~~~~~~~rr 64 (203)
+.++++++.+.+.+.+++||
T Consensus 398 ~~~~~~~~~~~~~~~~~~~r 417 (492)
T PHA03286 398 AGAILVVLLFALCIAGLYRR 417 (492)
T ss_pred HHHHHHHHHHHHHhHhHhhh
Confidence 33333444444444444444
No 312
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=22.37 E-value=3.9e+02 Score=23.38 Aligned_cols=13 Identities=15% Similarity=-0.003 Sum_probs=6.4
Q ss_pred CccccHhhHHHHH
Q 042698 132 NHGFHVRCIDKWL 144 (203)
Q Consensus 132 ~H~FH~~Ci~~Wl 144 (203)
+|.=|.+=+-.|+
T Consensus 199 ~Hlk~gD~i~n~i 211 (337)
T COG4219 199 SHLKRGDAIINLI 211 (337)
T ss_pred hhhhcccHHHHHH
Confidence 4554555554444
No 313
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=21.98 E-value=73 Score=27.56 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=28.2
Q ss_pred CCCcCccccCcccCCCceee--cCCCCccccHhhHHHHHhcCCCCccccc
Q 042698 108 LDNECVICLSDFAPGERVRI--LPKCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~--l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
....|+||-..-... .++. -.+=.|.+|.-|-..|--....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s-~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS-VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh-eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 346899998773221 1111 0112355556677779777788999964
No 314
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=21.79 E-value=31 Score=29.57 Aligned_cols=34 Identities=21% Similarity=0.586 Sum_probs=27.5
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWL 144 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl 144 (203)
...|+-|-+-+-+...||.- -.|+||.+|+...+
T Consensus 92 GTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~C~i 125 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKA--QDFVYHLHCFACFI 125 (383)
T ss_pred CCcchhhcCCCChHHHHHHh--hcceeehhhhhhHh
Confidence 46799999888777677664 68999999998765
No 315
>PHA03164 hypothetical protein; Provisional
Probab=21.74 E-value=88 Score=21.27 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042698 38 VIVLSVLVCGIICSLGL 54 (203)
Q Consensus 38 iiii~il~~~~i~~l~~ 54 (203)
++++..+.++.|+++++
T Consensus 60 FlvLtgLaIamILfiif 76 (88)
T PHA03164 60 FLVLTGLAIAMILFIIF 76 (88)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 316
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=75 Score=26.84 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=28.1
Q ss_pred CCCcCccccC-cccCCCceeecCCCCccccHhhHHHHHh
Q 042698 108 LDNECVICLS-DFAPGERVRILPKCNHGFHVRCIDKWLR 145 (203)
Q Consensus 108 ~~~~CaICl~-~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~ 145 (203)
..+.|++|.. ++..+.+..++..|||.|...|..-|.+
T Consensus 94 ~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 94 REETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 3457899888 5554444444445999999999999987
No 317
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=21.67 E-value=61 Score=19.53 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=21.5
Q ss_pred CcCccccCcc--cCCCceeecCCCCccccHhhHHH
Q 042698 110 NECVICLSDF--APGERVRILPKCNHGFHVRCIDK 142 (203)
Q Consensus 110 ~~CaICl~~~--~~~~~v~~l~~C~H~FH~~Ci~~ 142 (203)
..|.+|-+.+ .....++-. .|+-..|++|+..
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~-~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCS-WCGLVCHKKCLSK 45 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEET-TTT-EEETTGGCT
T ss_pred CCCcccCcccCCCCCCeEEEC-CCCChHhhhhhhh
Confidence 5799999888 233344444 4999999999875
No 318
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=21.65 E-value=11 Score=23.36 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=8.4
Q ss_pred CcCccccCcccC
Q 042698 110 NECVICLSDFAP 121 (203)
Q Consensus 110 ~~CaICl~~~~~ 121 (203)
..|+.|-+.+..
T Consensus 3 f~CP~C~~~~~~ 14 (54)
T PF05605_consen 3 FTCPYCGKGFSE 14 (54)
T ss_pred cCCCCCCCccCH
Confidence 569999875543
No 319
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=21.60 E-value=1.9e+02 Score=17.20 Aligned_cols=9 Identities=33% Similarity=0.707 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 042698 56 FLIRCILVS 64 (203)
Q Consensus 56 ~~~~~~~rr 64 (203)
++.++..++
T Consensus 28 ~~~~~F~~k 36 (42)
T PF11346_consen 28 FFIRYFIRK 36 (42)
T ss_pred HHHHHHHHH
Confidence 334444444
No 320
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=21.46 E-value=3e+02 Score=25.58 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 042698 22 TAAHPYSSESSLNSNAVIVLSVLVCGIICSLGLHFL 57 (203)
Q Consensus 22 ~~~~~~~s~~~~~~~~iiii~il~~~~i~~l~~~~~ 57 (203)
+..++.-....+...+++++..+++++++++++..+
T Consensus 140 t~~~~~~~~~~~~~~~~al~~~~~v~~l~~lvi~~~ 175 (534)
T KOG3653|consen 140 TPSSPDLATNDGEVLIYALIPLLLVSLLAALVILAF 175 (534)
T ss_pred CCCCCCcccccCceehhhHHHHHHHHHHHHHHHHHH
Confidence 333444334444444444444444444444433333
No 321
>PRK10927 essential cell division protein FtsN; Provisional
Probab=21.39 E-value=52 Score=28.51 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=10.0
Q ss_pred CCCCChhHHHHHHHHHHHHHH
Q 042698 30 ESSLNSNAVIVLSVLVCGIIC 50 (203)
Q Consensus 30 ~~~~~~~~iiii~il~~~~i~ 50 (203)
...+...|+++.+.++++|+.
T Consensus 29 ~~~~~~~m~alAvavlv~fiG 49 (319)
T PRK10927 29 LPAVSPAMVAIAAAVLVTFIG 49 (319)
T ss_pred CCCcchHHHHHHHHHHHHHhh
Confidence 445555555444444444443
No 322
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=21.35 E-value=2.9e+02 Score=20.43 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=6.2
Q ss_pred CCCCCChhHHHH
Q 042698 29 SESSLNSNAVIV 40 (203)
Q Consensus 29 s~~~~~~~~iii 40 (203)
+..++.+.-.++
T Consensus 75 sp~ps~p~d~aL 86 (126)
T PF03229_consen 75 SPGPSPPVDFAL 86 (126)
T ss_pred CCCCCCCcccch
Confidence 445555555444
No 323
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=21.33 E-value=71 Score=24.57 Aligned_cols=26 Identities=27% Similarity=0.083 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 39 IVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 39 iii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
+++.++.++++..+++.++--.++++
T Consensus 60 ivl~Vi~lLvlYM~fL~~ldPllrk~ 85 (149)
T PF05434_consen 60 IVLWVIGLLVLYMLFLMCLDPLLRKR 85 (149)
T ss_pred EeHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 33333333333344444443444333
No 324
>PF11660 DUF3262: Protein of unknown function (DUF3262); InterPro: IPR021676 This entry represents small, hydrophobic proteins that are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.27 E-value=2.7e+02 Score=18.66 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=20.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042698 30 ESSLNSNAVIVLSVLVCGIICSLGLHFLIRCILVSWS 66 (203)
Q Consensus 30 ~~~~~~~~iiii~il~~~~i~~l~~~~~~~~~~rr~~ 66 (203)
.+++++..+-.+.+.++..++.+......+-.+|-+.
T Consensus 12 asG~~p~~l~~li~g~~~avllLW~aWa~~~~y~Gw~ 48 (76)
T PF11660_consen 12 ASGFTPSQLSLLILGILFAVLLLWAAWALWSAYRGWA 48 (76)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447777665555555445555555555555555543
No 325
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=21.00 E-value=57 Score=24.93 Aligned_cols=39 Identities=28% Similarity=0.625 Sum_probs=21.0
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
.+|.||++.-.. ..+|.|.--|+. +-. ++.|+.=|-|+.
T Consensus 6 ~tC~ic~e~~~K----YKCpkC~vPYCS--l~C-fKiHk~tPq~~~ 44 (157)
T KOG2857|consen 6 TTCVICLESEIK----YKCPKCSVPYCS--LPC-FKIHKSTPQCET 44 (157)
T ss_pred eeehhhhcchhh----ccCCCCCCcccc--chh-hhhccCCccccc
Confidence 479999884211 234456655554 122 345555566754
No 326
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=20.83 E-value=39 Score=18.63 Aligned_cols=24 Identities=25% Similarity=0.753 Sum_probs=10.0
Q ss_pred cCccccCcccCC-CceeecCCCCcc
Q 042698 111 ECVICLSDFAPG-ERVRILPKCNHG 134 (203)
Q Consensus 111 ~CaICl~~~~~~-~~v~~l~~C~H~ 134 (203)
.|+-|-.++.=. ..+.+.+.|+|.
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCcceeccCCEEeCCccccc
Confidence 577787776532 244556667775
No 327
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=20.60 E-value=1.6e+02 Score=18.36 Aligned_cols=27 Identities=11% Similarity=0.391 Sum_probs=14.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH
Q 042698 32 SLNSNAVIVLSVLVCGIICSLGLHFLI 58 (203)
Q Consensus 32 ~~~~~~iiii~il~~~~i~~l~~~~~~ 58 (203)
.++.-.+=+.+.++.++++++.++++.
T Consensus 8 ~YDy~tLrigGLi~A~vlfi~Gi~iil 34 (50)
T PF02038_consen 8 YYDYETLRIGGLIFAGVLFILGILIIL 34 (50)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhHhhccchHHHHHHHHHHHHHHH
Confidence 344444555666666666655555543
No 328
>PHA03163 hypothetical protein; Provisional
Probab=20.58 E-value=2.7e+02 Score=19.45 Aligned_cols=12 Identities=8% Similarity=-0.178 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCC
Q 042698 16 LNEQPVTAAHPY 27 (203)
Q Consensus 16 ~~~~p~~~~~~~ 27 (203)
++..|.+.++.|
T Consensus 30 n~t~p~~~~~FY 41 (92)
T PHA03163 30 NSTTPHDFDMFH 41 (92)
T ss_pred CCCCCCCCcccc
Confidence 344455544333
No 329
>PLN02400 cellulose synthase
Probab=20.37 E-value=78 Score=32.05 Aligned_cols=49 Identities=22% Similarity=0.562 Sum_probs=31.9
Q ss_pred CCcCccccCcccC---CCceeecCCCCccccHhhHHHHHh--cCCCCcccccccc
Q 042698 109 DNECVICLSDFAP---GERVRILPKCNHGFHVRCIDKWLR--SNSSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~~---~~~v~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~l~ 158 (203)
...|-||-|++.. ++.-..+..|+---|..|.+ +=+ .++.||-||...-
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCccc
Confidence 3479999999753 33333333466668888983 332 3557999987554
No 330
>PF14353 CpXC: CpXC protein
Probab=20.26 E-value=86 Score=22.90 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=6.6
Q ss_pred cCccccCcccC
Q 042698 111 ECVICLSDFAP 121 (203)
Q Consensus 111 ~CaICl~~~~~ 121 (203)
+|+-|..+|..
T Consensus 3 tCP~C~~~~~~ 13 (128)
T PF14353_consen 3 TCPHCGHEFEF 13 (128)
T ss_pred CCCCCCCeeEE
Confidence 56666666543
No 331
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=20.16 E-value=49 Score=25.43 Aligned_cols=23 Identities=39% Similarity=0.853 Sum_probs=15.2
Q ss_pred CCccccHhhHHHHHhc-----------CCCCcccccccc
Q 042698 131 CNHGFHVRCIDKWLRS-----------NSSCPKCRHCLI 158 (203)
Q Consensus 131 C~H~FH~~Ci~~Wl~~-----------~~~CP~CR~~l~ 158 (203)
++|.|- .|+.. --+||+|-..-+
T Consensus 10 ~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~V 43 (148)
T PF06676_consen 10 NGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTEV 43 (148)
T ss_pred CCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCeE
Confidence 578765 59863 236999976544
No 332
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=20.16 E-value=72 Score=28.95 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=20.8
Q ss_pred cCccccCcccCC-C--ceeecCCCCccccHhhHHHH
Q 042698 111 ECVICLSDFAPG-E--RVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 111 ~CaICl~~~~~~-~--~v~~l~~C~H~FH~~Ci~~W 143 (203)
.|.||.. |..+ + -...+..|+|.-|.+|-.+-
T Consensus 130 ~C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCALr~ 164 (446)
T PF07227_consen 130 MCCICSK-FDDNKNTCSWIGCDVCGHWCHLDCALRH 164 (446)
T ss_pred CccccCC-cccCCCCeeEEeccCCCceehhhhhccc
Confidence 5888843 6432 2 23344468999999997664
No 333
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.03 E-value=56 Score=27.98 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=27.1
Q ss_pred CcCccccCcccCCCceeecCC-CCccccHhhHHHHHhcC
Q 042698 110 NECVICLSDFAPGERVRILPK-CNHGFHVRCIDKWLRSN 147 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~-C~H~FH~~Ci~~Wl~~~ 147 (203)
..|.+|.|.+++..-| ++|. =.|-||.-|=.+-++.+
T Consensus 269 LcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred eeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhh
Confidence 5799999999876333 2221 16999999999998754
No 334
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.01 E-value=49 Score=29.15 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=10.4
Q ss_pred CCCCcCccccCccc
Q 042698 107 GLDNECVICLSDFA 120 (203)
Q Consensus 107 ~~~~~CaICl~~~~ 120 (203)
+.++-|++|-+...
T Consensus 13 dl~ElCPVCGDkVS 26 (475)
T KOG4218|consen 13 DLGELCPVCGDKVS 26 (475)
T ss_pred ccccccccccCccc
Confidence 34567999988864
No 335
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=20.01 E-value=68 Score=20.32 Aligned_cols=10 Identities=40% Similarity=1.142 Sum_probs=7.1
Q ss_pred CCcccccccc
Q 042698 149 SCPKCRHCLI 158 (203)
Q Consensus 149 ~CP~CR~~l~ 158 (203)
.||-||..-.
T Consensus 30 yCpKCK~Etl 39 (55)
T PF14205_consen 30 YCPKCKQETL 39 (55)
T ss_pred cCCCCCceEE
Confidence 5999987543
Done!