Query 042698
Match_columns 203
No_of_seqs 148 out of 1824
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:59:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 5E-19 1.7E-23 124.5 7.9 82 77-159 8-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 2.1E-17 7.3E-22 111.8 4.2 68 91-160 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 1.1E-16 3.8E-21 101.6 4.2 51 108-158 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 3.5E-16 1.2E-20 105.3 6.4 54 107-161 13-66 (74)
5 2kiz_A E3 ubiquitin-protein li 99.6 5.6E-16 1.9E-20 102.9 5.9 54 106-160 11-64 (69)
6 2ect_A Ring finger protein 126 99.6 7.8E-16 2.7E-20 104.6 6.2 53 107-160 13-65 (78)
7 2ecl_A Ring-box protein 2; RNF 99.6 6.9E-16 2.4E-20 106.1 4.1 53 108-160 14-77 (81)
8 2ecm_A Ring finger and CHY zin 99.5 5.6E-15 1.9E-19 93.6 4.5 50 108-158 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.5 6E-15 2.1E-19 107.3 5.1 52 109-161 25-96 (114)
10 3dpl_R Ring-box protein 1; ubi 99.5 1.4E-14 4.9E-19 104.5 4.9 50 108-158 36-100 (106)
11 3ng2_A RNF4, snurf, ring finge 99.5 9.3E-15 3.2E-19 97.3 3.2 53 107-160 8-64 (71)
12 2ea6_A Ring finger protein 4; 99.5 1.4E-14 4.7E-19 95.8 3.9 52 107-159 13-68 (69)
13 1chc_A Equine herpes virus-1 r 99.5 4.6E-14 1.6E-18 93.2 6.0 50 108-160 4-53 (68)
14 2xeu_A Ring finger protein 4; 99.5 1.4E-14 4.8E-19 94.3 2.8 51 109-160 3-57 (64)
15 2d8s_A Cellular modulator of i 99.5 4.3E-14 1.5E-18 96.9 5.1 53 106-160 12-71 (80)
16 2ecn_A Ring finger protein 141 99.5 3.8E-14 1.3E-18 94.2 3.9 50 107-161 13-62 (70)
17 2djb_A Polycomb group ring fin 99.4 1.7E-13 5.7E-18 91.7 5.3 51 107-160 13-63 (72)
18 2d8t_A Dactylidin, ring finger 99.4 9E-14 3.1E-18 92.8 3.9 50 107-160 13-62 (71)
19 4a0k_B E3 ubiquitin-protein li 99.4 3.2E-14 1.1E-18 104.2 0.2 50 108-158 47-111 (117)
20 2ct2_A Tripartite motif protei 99.4 4.9E-13 1.7E-17 92.4 5.7 53 107-160 13-69 (88)
21 2yur_A Retinoblastoma-binding 99.4 6.8E-13 2.3E-17 89.3 5.5 52 107-161 13-66 (74)
22 2ct0_A Non-SMC element 1 homol 99.4 9.7E-13 3.3E-17 88.6 5.6 51 107-160 13-65 (74)
23 2csy_A Zinc finger protein 183 99.4 6.8E-13 2.3E-17 90.7 4.9 48 107-158 13-60 (81)
24 2ecy_A TNF receptor-associated 99.3 8.5E-13 2.9E-17 86.7 4.7 50 107-160 13-63 (66)
25 2ysl_A Tripartite motif-contai 99.3 1.1E-12 3.9E-17 87.5 4.9 50 107-160 18-70 (73)
26 4ayc_A E3 ubiquitin-protein li 99.3 9.1E-13 3.1E-17 99.1 3.3 48 109-160 53-100 (138)
27 4ap4_A E3 ubiquitin ligase RNF 99.3 1.4E-12 4.8E-17 96.4 3.2 53 108-161 6-62 (133)
28 2ysj_A Tripartite motif-contai 99.3 6.7E-12 2.3E-16 81.5 5.7 43 107-153 18-63 (63)
29 2ecw_A Tripartite motif-contai 99.3 6.1E-12 2.1E-16 86.0 5.7 50 107-160 17-72 (85)
30 1t1h_A Gspef-atpub14, armadill 99.3 4.5E-12 1.5E-16 85.8 4.9 49 107-159 6-55 (78)
31 3lrq_A E3 ubiquitin-protein li 99.3 2.6E-12 9.1E-17 91.4 3.8 48 109-159 22-70 (100)
32 2ecv_A Tripartite motif-contai 99.2 6.4E-12 2.2E-16 85.9 5.0 49 107-159 17-71 (85)
33 2egp_A Tripartite motif-contai 99.2 1.8E-12 6.2E-17 87.8 2.0 50 107-160 10-66 (79)
34 2ecj_A Tripartite motif-contai 99.2 7.4E-12 2.5E-16 79.7 4.7 43 107-153 13-58 (58)
35 2y43_A E3 ubiquitin-protein li 99.2 6E-12 2.1E-16 89.1 4.2 48 109-159 22-69 (99)
36 1g25_A CDK-activating kinase a 99.2 6.1E-12 2.1E-16 82.3 3.9 51 109-160 3-56 (65)
37 4ap4_A E3 ubiquitin ligase RNF 99.2 5.2E-12 1.8E-16 93.3 3.7 53 107-160 70-126 (133)
38 2ckl_A Polycomb group ring fin 99.2 6.6E-12 2.3E-16 90.3 3.8 50 108-160 14-63 (108)
39 3ztg_A E3 ubiquitin-protein li 99.2 2E-11 6.9E-16 85.1 5.1 49 107-158 11-61 (92)
40 2ckl_B Ubiquitin ligase protei 99.2 1.8E-11 6.1E-16 94.5 4.5 48 109-159 54-102 (165)
41 3fl2_A E3 ubiquitin-protein li 99.2 1.7E-11 5.8E-16 90.3 3.8 47 109-159 52-99 (124)
42 1jm7_A BRCA1, breast cancer ty 99.1 3.2E-11 1.1E-15 86.9 3.8 48 109-160 21-71 (112)
43 3hct_A TNF receptor-associated 99.1 4.8E-11 1.6E-15 87.2 3.7 50 107-160 16-66 (118)
44 1e4u_A Transcriptional repress 99.1 2.3E-10 8E-15 77.8 6.5 54 107-161 9-64 (78)
45 1z6u_A NP95-like ring finger p 99.1 6.8E-11 2.3E-15 90.2 3.9 48 109-160 78-126 (150)
46 1rmd_A RAG1; V(D)J recombinati 99.1 8E-11 2.7E-15 85.6 3.8 48 109-160 23-71 (116)
47 3l11_A E3 ubiquitin-protein li 99.0 3.4E-11 1.2E-15 87.4 1.5 48 108-159 14-62 (115)
48 2vje_A E3 ubiquitin-protein li 99.0 1.2E-10 4.1E-15 76.1 2.9 49 108-159 7-57 (64)
49 1bor_A Transcription factor PM 99.0 9E-11 3.1E-15 74.6 2.0 48 107-161 4-51 (56)
50 2y1n_A E3 ubiquitin-protein li 99.0 2.3E-10 7.7E-15 99.3 5.1 50 109-162 332-382 (389)
51 2kr4_A Ubiquitin conjugation f 99.0 6.4E-10 2.2E-14 76.7 5.2 49 107-159 12-60 (85)
52 2vje_B MDM4 protein; proto-onc 99.0 2.5E-10 8.5E-15 74.4 2.7 51 108-160 6-57 (63)
53 3k1l_B Fancl; UBC, ring, RWD, 99.0 2.8E-10 9.4E-15 96.7 3.7 55 107-161 306-375 (381)
54 3knv_A TNF receptor-associated 98.9 2E-10 6.7E-15 86.7 1.9 49 107-159 29-78 (141)
55 2kre_A Ubiquitin conjugation f 98.9 9.1E-10 3.1E-14 78.3 4.5 49 107-159 27-75 (100)
56 1wgm_A Ubiquitin conjugation f 98.9 1.4E-09 4.7E-14 77.1 4.9 49 107-159 20-69 (98)
57 1jm7_B BARD1, BRCA1-associated 98.9 3.7E-10 1.3E-14 82.3 1.6 44 109-158 22-66 (117)
58 4ic3_A E3 ubiquitin-protein li 98.8 8E-10 2.7E-14 74.2 1.5 44 109-160 24-68 (74)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.8 3.3E-09 1.1E-13 68.4 3.6 48 107-158 4-58 (60)
60 3hcs_A TNF receptor-associated 98.8 3.1E-09 1.1E-13 82.2 3.7 50 107-160 16-66 (170)
61 2c2l_A CHIP, carboxy terminus 98.7 7.6E-09 2.6E-13 85.3 4.4 49 107-159 206-255 (281)
62 1wim_A KIAA0161 protein; ring 98.7 6.4E-09 2.2E-13 72.8 3.3 50 109-159 5-66 (94)
63 2yu4_A E3 SUMO-protein ligase 98.7 8.3E-09 2.8E-13 72.4 3.4 46 108-156 6-59 (94)
64 2ea5_A Cell growth regulator w 98.7 2.5E-08 8.4E-13 65.8 5.4 48 107-162 13-61 (68)
65 2ecg_A Baculoviral IAP repeat- 98.6 1.2E-08 4.2E-13 68.4 2.8 44 109-160 25-69 (75)
66 2f42_A STIP1 homology and U-bo 98.5 7.6E-08 2.6E-12 75.2 4.5 49 107-159 104-153 (179)
67 2yho_A E3 ubiquitin-protein li 98.5 3.5E-08 1.2E-12 67.0 2.0 45 109-161 18-63 (79)
68 3htk_C E3 SUMO-protein ligase 98.4 1.1E-07 3.6E-12 78.2 3.7 49 108-159 180-232 (267)
69 2bay_A PRE-mRNA splicing facto 98.4 1.5E-07 5.1E-12 60.7 3.0 48 110-160 4-51 (61)
70 3t6p_A Baculoviral IAP repeat- 98.3 8.8E-08 3E-12 82.2 1.2 44 109-160 295-339 (345)
71 3nw0_A Non-structural maintena 98.3 1E-06 3.5E-11 71.8 5.7 50 108-160 179-230 (238)
72 3vk6_A E3 ubiquitin-protein li 98.1 1.8E-06 6E-11 60.6 3.5 49 111-162 3-52 (101)
73 2lri_C Autoimmune regulator; Z 96.8 0.0011 3.8E-08 43.0 3.8 49 106-158 9-61 (66)
74 2ko5_A Ring finger protein Z; 95.9 0.0098 3.4E-07 40.9 4.2 49 110-163 29-77 (99)
75 1we9_A PHD finger family prote 95.7 0.003 1E-07 40.5 1.0 49 107-155 4-57 (64)
76 1wil_A KIAA1045 protein; ring 95.4 0.019 6.4E-07 38.7 4.3 36 106-143 12-47 (89)
77 3lqh_A Histone-lysine N-methyl 94.9 0.011 3.9E-07 45.9 2.2 49 110-158 3-65 (183)
78 2jun_A Midline-1; B-BOX, TRIM, 94.7 0.027 9.2E-07 38.9 3.6 34 109-143 3-36 (101)
79 2l5u_A Chromodomain-helicase-D 94.4 0.026 9E-07 35.7 2.7 46 107-156 9-58 (61)
80 2k16_A Transcription initiatio 94.1 0.015 5.3E-07 38.2 1.2 50 108-158 17-70 (75)
81 3o36_A Transcription intermedi 93.6 0.037 1.3E-06 42.7 2.7 47 108-158 3-53 (184)
82 2vpb_A Hpygo1, pygopus homolog 93.5 0.064 2.2E-06 34.4 3.2 34 108-141 7-41 (65)
83 1mm2_A MI2-beta; PHD, zinc fin 93.1 0.024 8.2E-07 35.9 0.7 47 107-157 7-57 (61)
84 1wep_A PHF8; structural genomi 93.1 0.075 2.6E-06 35.3 3.2 49 109-158 12-65 (79)
85 2puy_A PHD finger protein 21A; 93.0 0.013 4.5E-07 37.0 -0.6 49 108-160 4-56 (60)
86 3u5n_A E3 ubiquitin-protein li 92.8 0.026 8.8E-07 44.5 0.7 47 107-157 5-55 (207)
87 2kgg_A Histone demethylase jar 92.3 0.048 1.6E-06 33.3 1.4 44 111-154 4-52 (52)
88 1f62_A Transcription factor WS 92.3 0.074 2.5E-06 32.1 2.2 44 111-155 2-49 (51)
89 1xwh_A Autoimmune regulator; P 91.9 0.03 1E-06 36.0 0.1 45 107-155 6-54 (66)
90 2yql_A PHD finger protein 21A; 91.8 0.029 9.9E-07 34.8 -0.1 45 107-155 7-55 (56)
91 2ku3_A Bromodomain-containing 91.7 0.071 2.4E-06 34.8 1.7 49 107-155 14-65 (71)
92 1fp0_A KAP-1 corepressor; PHD 91.5 0.12 4.1E-06 35.2 2.7 46 107-156 23-72 (88)
93 2l43_A N-teminal domain from h 91.3 0.069 2.4E-06 36.4 1.3 51 107-157 23-76 (88)
94 3v43_A Histone acetyltransfera 90.8 0.071 2.4E-06 37.8 1.1 45 111-155 63-111 (112)
95 1wem_A Death associated transc 90.4 0.16 5.3E-06 33.4 2.4 47 109-157 16-71 (76)
96 2ri7_A Nucleosome-remodeling f 90.0 0.069 2.4E-06 40.7 0.5 48 108-156 7-59 (174)
97 2xb1_A Pygopus homolog 2, B-ce 90.0 0.19 6.6E-06 35.2 2.7 48 110-157 4-62 (105)
98 2ysm_A Myeloid/lymphoid or mix 89.6 0.12 4.2E-06 36.4 1.5 47 107-154 5-55 (111)
99 3o70_A PHD finger protein 13; 89.2 0.11 3.6E-06 33.7 0.8 46 108-155 18-66 (68)
100 1wee_A PHD finger family prote 89.1 0.076 2.6E-06 34.6 0.0 47 109-156 16-66 (72)
101 1wen_A Inhibitor of growth fam 89.1 0.32 1.1E-05 31.6 3.1 45 107-156 14-65 (71)
102 2yt5_A Metal-response element- 88.5 0.27 9.3E-06 31.1 2.4 50 107-156 4-61 (66)
103 1weu_A Inhibitor of growth fam 88.4 0.29 9.9E-06 33.5 2.6 44 108-156 35-85 (91)
104 2knc_A Integrin alpha-IIB; tra 88.3 2.5 8.7E-05 25.9 6.6 30 35-64 11-40 (54)
105 2ro1_A Transcription intermedi 88.1 0.12 4E-06 40.2 0.5 44 109-156 2-49 (189)
106 2lv9_A Histone-lysine N-methyl 87.3 0.27 9.4E-06 34.0 2.0 45 110-156 29-76 (98)
107 3v43_A Histone acetyltransfera 87.0 1.1 3.9E-05 31.4 5.2 46 109-154 5-62 (112)
108 2l8s_A Integrin alpha-1; trans 86.6 2.7 9.3E-05 25.7 6.0 30 35-64 8-37 (54)
109 2lbm_A Transcriptional regulat 86.3 0.93 3.2E-05 33.5 4.5 46 107-156 61-117 (142)
110 4gne_A Histone-lysine N-methyl 85.5 0.69 2.4E-05 32.6 3.3 46 107-158 13-64 (107)
111 1wew_A DNA-binding family prot 85.0 0.41 1.4E-05 31.6 1.8 47 108-156 15-72 (78)
112 2e6r_A Jumonji/ARID domain-con 84.9 0.19 6.4E-06 34.4 0.1 48 108-156 15-66 (92)
113 3c6w_A P28ING5, inhibitor of g 84.8 0.23 7.9E-06 31.1 0.5 43 108-155 8-57 (59)
114 3ql9_A Transcriptional regulat 84.6 1.5 5.2E-05 31.8 4.9 46 107-156 55-111 (129)
115 2klu_A T-cell surface glycopro 84.5 1.3 4.4E-05 28.3 3.9 25 44-68 14-38 (70)
116 2kwj_A Zinc finger protein DPF 82.7 1 3.4E-05 31.8 3.2 45 110-154 2-59 (114)
117 2vnf_A ING 4, P29ING4, inhibit 82.0 0.33 1.1E-05 30.4 0.4 42 109-155 10-58 (60)
118 1wev_A Riken cDNA 1110020M19; 81.8 0.47 1.6E-05 32.1 1.1 50 109-158 16-74 (88)
119 3o7a_A PHD finger protein 13 v 80.6 0.34 1.2E-05 29.3 0.1 42 114-156 8-52 (52)
120 2g6q_A Inhibitor of growth pro 79.7 0.48 1.6E-05 29.9 0.6 43 108-155 10-59 (62)
121 3shb_A E3 ubiquitin-protein li 78.6 0.29 9.9E-06 32.4 -0.8 44 111-155 28-76 (77)
122 2e6s_A E3 ubiquitin-protein li 76.3 0.68 2.3E-05 30.5 0.6 45 110-155 27-76 (77)
123 3asl_A E3 ubiquitin-protein li 73.4 0.68 2.3E-05 29.9 -0.0 44 111-155 20-68 (70)
124 2k1a_A Integrin alpha-IIB; sin 72.9 5.3 0.00018 23.1 3.8 26 35-60 9-34 (42)
125 1x4i_A Inhibitor of growth pro 72.5 2.5 8.4E-05 27.2 2.5 47 109-158 6-57 (70)
126 1zfo_A LAsp-1; LIM domain, zin 72.5 1.1 3.8E-05 24.0 0.7 28 110-140 4-31 (31)
127 3kv5_D JMJC domain-containing 72.3 1.6 5.3E-05 38.8 2.0 49 109-158 37-90 (488)
128 3ask_A E3 ubiquitin-protein li 71.4 1.2 4.2E-05 35.5 1.0 44 111-155 176-224 (226)
129 3kv4_A PHD finger protein 8; e 71.2 0.97 3.3E-05 39.7 0.4 46 113-158 8-58 (447)
130 2kwj_A Zinc finger protein DPF 70.3 0.43 1.5E-05 33.8 -1.7 47 111-158 60-110 (114)
131 2ysm_A Myeloid/lymphoid or mix 69.8 0.77 2.6E-05 32.1 -0.5 45 111-156 56-104 (111)
132 2jmi_A Protein YNG1, ING1 homo 69.4 1.4 4.8E-05 30.0 0.8 45 108-155 25-75 (90)
133 1vfy_A Phosphatidylinositol-3- 69.0 3.9 0.00013 26.3 2.9 33 110-142 12-44 (73)
134 3f6q_B LIM and senescent cell 67.7 3.8 0.00013 25.4 2.7 42 109-160 11-52 (72)
135 3kqi_A GRC5, PHD finger protei 67.6 3.2 0.00011 26.8 2.3 47 110-157 11-62 (75)
136 3m62_A Ubiquitin conjugation f 66.8 5.4 0.00018 38.3 4.5 49 107-159 889-938 (968)
137 2jwa_A Receptor tyrosine-prote 66.3 11 0.00038 22.0 4.2 25 38-64 13-37 (44)
138 1joc_A EEA1, early endosomal a 66.0 4.2 0.00014 29.1 2.9 34 110-143 70-103 (125)
139 1z2q_A LM5-1; membrane protein 65.6 5 0.00017 26.5 3.0 35 109-143 21-55 (84)
140 3t7l_A Zinc finger FYVE domain 65.3 4.7 0.00016 27.1 2.9 50 110-159 21-76 (90)
141 1wfk_A Zinc finger, FYVE domai 65.2 5 0.00017 26.9 2.9 51 109-159 9-66 (88)
142 2cs3_A Protein C14ORF4, MY039 64.8 22 0.00076 23.5 5.9 38 108-146 14-52 (93)
143 2yw8_A RUN and FYVE domain-con 64.5 5.2 0.00018 26.3 2.9 35 109-143 19-53 (82)
144 1dvp_A HRS, hepatocyte growth 63.9 3.8 0.00013 32.1 2.5 35 109-143 161-195 (220)
145 1zbd_B Rabphilin-3A; G protein 63.3 4.6 0.00016 29.4 2.6 49 107-155 53-106 (134)
146 1x4l_A Skeletal muscle LIM-pro 63.1 4.9 0.00017 25.2 2.5 39 110-158 6-46 (72)
147 1y02_A CARP2, FYVE-ring finger 62.4 1.3 4.4E-05 31.8 -0.5 47 110-156 20-66 (120)
148 3zyq_A Hepatocyte growth facto 62.3 4.2 0.00014 32.1 2.5 35 109-143 164-198 (226)
149 1weo_A Cellulose synthase, cat 62.1 21 0.00073 24.1 5.5 51 108-158 15-69 (93)
150 3i2d_A E3 SUMO-protein ligase 61.4 7.6 0.00026 33.1 4.0 46 110-158 250-299 (371)
151 2cu8_A Cysteine-rich protein 2 60.9 5.7 0.00019 25.2 2.5 40 109-159 9-48 (76)
152 1x4u_A Zinc finger, FYVE domai 60.7 6.3 0.00022 26.0 2.8 34 109-142 14-47 (84)
153 2klu_A T-cell surface glycopro 58.7 9.6 0.00033 24.2 3.1 30 38-67 12-41 (70)
154 4fo9_A E3 SUMO-protein ligase 58.1 9.4 0.00032 32.4 4.0 46 110-158 216-265 (360)
155 1z60_A TFIIH basal transcripti 56.5 4.9 0.00017 25.0 1.5 42 110-153 16-58 (59)
156 2knc_B Integrin beta-3; transm 55.9 16 0.00055 24.0 4.1 18 40-57 14-31 (79)
157 2gmg_A Hypothetical protein PF 55.4 2.3 8E-05 29.7 -0.1 27 130-161 72-98 (105)
158 2ks1_B Epidermal growth factor 55.3 12 0.00042 21.7 3.0 9 52-60 29-37 (44)
159 1g47_A Pinch protein; LIM doma 54.8 6.7 0.00023 24.7 2.1 43 108-160 10-52 (77)
160 3a1b_A DNA (cytosine-5)-methyl 53.8 12 0.00042 28.0 3.6 45 107-155 77-133 (159)
161 2ku7_A MLL1 PHD3-CYP33 RRM chi 52.5 18 0.0006 25.2 4.3 31 127-157 4-45 (140)
162 2l2t_A Receptor tyrosine-prote 50.0 15 0.0005 21.4 2.8 11 51-61 27-37 (44)
163 2zet_C Melanophilin; complex, 49.9 11 0.00038 28.0 2.8 47 108-155 67-116 (153)
164 1x4k_A Skeletal muscle LIM-pro 48.4 7.4 0.00025 24.2 1.5 40 110-159 6-45 (72)
165 2d8x_A Protein pinch; LIM doma 48.0 14 0.00048 22.8 2.8 40 109-160 5-44 (70)
166 2k9j_B Integrin beta-3; transm 47.8 38 0.0013 19.4 4.8 26 36-61 9-34 (43)
167 2d8v_A Zinc finger FYVE domain 47.8 19 0.00065 22.8 3.2 31 108-143 7-38 (67)
168 2pv0_B DNA (cytosine-5)-methyl 47.3 15 0.00052 31.5 3.6 46 107-156 91-148 (386)
169 2rgt_A Fusion of LIM/homeobox 47.3 10 0.00036 28.0 2.4 39 110-158 66-104 (169)
170 2rsd_A E3 SUMO-protein ligase 45.8 9.2 0.00031 24.1 1.6 45 109-155 10-64 (68)
171 1wyh_A SLIM 2, skeletal muscle 45.5 8.3 0.00029 23.9 1.4 40 110-159 6-45 (72)
172 1zza_A Stannin, AG8_1; helix, 45.4 43 0.0015 21.6 4.7 7 56-62 32-38 (90)
173 2co8_A NEDD9 interacting prote 44.7 14 0.00047 23.9 2.4 42 108-160 14-55 (82)
174 3mpx_A FYVE, rhogef and PH dom 43.4 5 0.00017 34.3 0.0 36 109-144 375-410 (434)
175 1x61_A Thyroid receptor intera 43.4 11 0.00036 23.5 1.6 39 110-158 6-44 (72)
176 2dj7_A Actin-binding LIM prote 43.3 17 0.00059 23.3 2.7 40 108-158 14-53 (80)
177 1x62_A C-terminal LIM domain p 42.1 17 0.00058 23.1 2.5 39 109-159 15-53 (79)
178 2o35_A Hypothetical protein DU 41.7 11 0.00037 26.0 1.5 11 135-145 43-53 (105)
179 3mjh_B Early endosome antigen 41.7 5.7 0.0002 21.8 0.1 10 150-159 8-17 (34)
180 3fyb_A Protein of unknown func 41.0 11 0.00038 25.9 1.5 11 135-145 42-52 (104)
181 1x63_A Skeletal muscle LIM-pro 40.5 12 0.0004 23.9 1.5 41 109-159 15-55 (82)
182 2l6w_A Beta-type platelet-deri 46.4 5.9 0.0002 22.4 0.0 18 40-57 11-28 (39)
183 2l3k_A Rhombotin-2, linker, LI 39.7 10 0.00034 26.6 1.1 30 111-142 10-39 (123)
184 2jtn_A LIM domain-binding prot 38.8 14 0.00047 27.7 1.9 45 109-159 87-131 (182)
185 1a7i_A QCRP2 (LIM1); LIM domai 37.9 9 0.00031 24.5 0.6 40 109-159 7-46 (81)
186 1wd2_A Ariadne-1 protein homol 37.7 3.4 0.00011 25.7 -1.5 36 110-145 7-46 (60)
187 1x68_A FHL5 protein; four-and- 37.0 16 0.00053 23.0 1.7 39 110-158 6-46 (76)
188 2l4z_A DNA endonuclease RBBP8, 36.4 22 0.00076 24.9 2.6 38 110-158 62-99 (123)
189 2kih_A Matrix protein 2; S31N, 36.2 32 0.0011 19.4 2.6 10 56-65 29-38 (43)
190 2jo1_A Phospholemman; FXYD1, N 35.5 86 0.003 20.0 6.0 27 32-58 10-36 (72)
191 1rut_X Flinc4, fusion protein 35.4 22 0.00075 26.7 2.6 29 111-141 71-99 (188)
192 2knc_B Integrin beta-3; transm 35.3 60 0.0021 21.1 4.4 21 38-58 16-36 (79)
193 2jp3_A FXYD domain-containing 35.2 85 0.0029 19.8 5.1 28 31-58 10-37 (67)
194 2d8y_A Eplin protein; LIM doma 35.0 14 0.00049 24.2 1.3 40 109-159 15-54 (91)
195 1x64_A Alpha-actinin-2 associa 34.8 25 0.00084 22.8 2.5 39 109-159 25-63 (89)
196 1iml_A CRIP, cysteine rich int 34.1 10 0.00036 23.9 0.4 26 112-140 3-28 (76)
197 2pk7_A Uncharacterized protein 33.8 8.8 0.0003 24.6 0.0 20 141-160 2-21 (69)
198 2wwb_C SEC61BETA, protein tran 33.0 44 0.0015 22.8 3.4 26 27-52 62-87 (96)
199 2cup_A Skeletal muscle LIM-pro 32.9 19 0.00064 23.9 1.6 30 109-140 66-95 (101)
200 2l9u_A Receptor tyrosine-prote 32.5 65 0.0022 17.6 4.8 22 37-58 8-29 (40)
201 2jne_A Hypothetical protein YF 32.4 12 0.0004 25.8 0.5 40 110-158 33-72 (101)
202 1tac_A TAT protein; transcript 31.3 65 0.0022 21.4 3.9 52 127-186 19-75 (86)
203 2jrp_A Putative cytoplasmic pr 30.5 20 0.00067 23.7 1.3 40 110-158 3-42 (81)
204 2jny_A Uncharacterized BCR; st 30.0 8.7 0.0003 24.5 -0.5 20 141-160 4-23 (67)
205 2lcq_A Putative toxin VAPC6; P 29.5 15 0.00052 27.1 0.7 26 127-158 134-159 (165)
206 2jvx_A NF-kappa-B essential mo 29.4 15 0.00052 19.2 0.5 12 148-159 4-15 (28)
207 1rh5_C Secbeta; protein transl 28.3 54 0.0018 19.7 2.9 28 26-53 21-48 (53)
208 2cor_A Pinch protein; LIM doma 28.3 32 0.0011 21.8 2.1 40 109-160 15-54 (79)
209 2kpi_A Uncharacterized protein 27.6 22 0.00075 21.6 1.1 26 110-135 11-38 (56)
210 2ehe_A Four and A half LIM dom 27.0 24 0.00083 22.4 1.3 40 110-159 16-55 (82)
211 3pwf_A Rubrerythrin; non heme 26.9 33 0.0011 25.7 2.2 24 125-155 138-161 (170)
212 2iyb_E Testin, TESS, TES; LIM 26.4 43 0.0015 20.2 2.4 39 110-158 3-43 (65)
213 1jb0_I Photosystem 1 reaction 25.3 91 0.0031 17.4 3.3 23 33-55 10-32 (38)
214 2egq_A FHL1 protein; LIM domai 25.1 27 0.00093 21.8 1.3 40 110-159 16-58 (77)
215 2ct7_A Ring finger protein 31; 24.9 6.6 0.00022 26.0 -1.9 23 126-148 44-66 (86)
216 1lko_A Rubrerythrin all-iron(I 23.6 23 0.00078 27.0 0.8 23 128-156 158-180 (191)
217 4bbq_A Lysine-specific demethy 23.5 21 0.00072 24.6 0.5 44 112-155 62-113 (117)
218 2jmo_A Parkin; IBR, E3 ligase, 23.4 5.9 0.0002 25.9 -2.3 14 130-143 55-68 (80)
219 1v6g_A Actin binding LIM prote 23.3 32 0.0011 21.7 1.4 37 110-158 16-52 (81)
220 1m3v_A FLIN4, fusion of the LI 22.7 74 0.0025 21.8 3.3 50 110-161 33-83 (122)
221 2das_A Zinc finger MYM-type pr 22.1 1E+02 0.0035 19.0 3.4 35 109-143 20-55 (62)
222 2jr6_A UPF0434 protein NMA0874 21.9 9 0.00031 24.4 -1.6 18 143-160 4-21 (68)
223 1yuz_A Nigerythrin; rubrythrin 21.8 46 0.0016 25.6 2.2 25 125-156 171-195 (202)
224 2fiy_A Protein FDHE homolog; F 21.7 7.2 0.00025 32.4 -2.6 48 108-156 181-231 (309)
225 2xqn_T Testin, TESS; metal-bin 21.5 68 0.0023 22.0 2.9 25 132-158 50-74 (126)
226 2cur_A Skeletal muscle LIM-pro 20.6 45 0.0015 20.2 1.6 37 110-158 6-42 (69)
227 2dar_A PDZ and LIM domain prot 20.3 36 0.0012 22.0 1.2 39 109-159 25-63 (90)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.78 E-value=5e-19 Score=124.49 Aligned_cols=82 Identities=28% Similarity=0.621 Sum_probs=72.2
Q ss_pred CCChhhhcCCCHHHHhhcCeEEccCCCCCCCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccc
Q 042698 77 SSTPLAKTGIKKKALKAFTIVKYSGELKLPGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHC 156 (203)
Q Consensus 77 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 156 (203)
........+.+++.++.+|.+.+.......+.+.+|+||+++|..++.++.++ |+|.||..||..|++.+.+||+||..
T Consensus 8 ~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 8 HSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 34455678899999999999999876655566788999999999999899999 99999999999999999999999998
Q ss_pred ccc
Q 042698 157 LIE 159 (203)
Q Consensus 157 l~~ 159 (203)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-17 Score=111.75 Aligned_cols=68 Identities=35% Similarity=0.842 Sum_probs=57.2
Q ss_pred HhhcCeEEccCCCCCCCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 91 LKAFTIVKYSGELKLPGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 91 ~~~lp~~~~~~~~~~~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
++.+|...+..... ...+.+|+||+++|..++.++.++ |+|.||..||..|++.+.+||+||+.+.+.
T Consensus 6 i~~lp~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNNH-QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSSC-SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCccc-cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45677777765432 235578999999999999999999 999999999999999999999999988764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.64 E-value=1.1e-16 Score=101.63 Aligned_cols=51 Identities=47% Similarity=1.171 Sum_probs=46.0
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
++.+|+||+++|..++.+..++.|+|.||..||..|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456899999999998888888669999999999999999999999998764
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-16 Score=105.33 Aligned_cols=54 Identities=37% Similarity=0.971 Sum_probs=48.7
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
..+.+|+||+++|..++.+..++ |+|.||..||..|++.+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 45678999999999988888898 9999999999999999899999999987653
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=5.6e-16 Score=102.94 Aligned_cols=54 Identities=44% Similarity=0.938 Sum_probs=48.3
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 106 PGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 106 ~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
...+.+|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999999888888998 999999999999999999999999988764
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=7.8e-16 Score=104.64 Aligned_cols=53 Identities=51% Similarity=1.030 Sum_probs=48.3
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
..+.+|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 45678999999999988888898 999999999999999999999999998765
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.9e-16 Score=106.06 Aligned_cols=53 Identities=28% Similarity=0.739 Sum_probs=43.2
Q ss_pred CCCcCccccCcccC-----------CCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 108 LDNECVICLSDFAP-----------GERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 108 ~~~~CaICl~~~~~-----------~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
++++|+||+++|.. ++.++.++.|+|.||.+||..|++.+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 35679999888854 344555555999999999999999999999999987654
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.53 E-value=5.6e-15 Score=93.56 Aligned_cols=50 Identities=30% Similarity=0.686 Sum_probs=43.0
Q ss_pred CCCcCccccCcccCCC-ceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 108 LDNECVICLSDFAPGE-RVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~-~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
.+.+|+||++++..++ .+..++ |+|.||..||..|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3568999999996644 567777 9999999999999999899999998764
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.53 E-value=6e-15 Score=107.28 Aligned_cols=52 Identities=27% Similarity=0.729 Sum_probs=42.3
Q ss_pred CCcCccccCcccCCC---------------ceeecCCCCccccHhhHHHHH-----hcCCCCccccccccccc
Q 042698 109 DNECVICLSDFAPGE---------------RVRILPKCNHGFHVRCIDKWL-----RSNSSCPKCRHCLIESC 161 (203)
Q Consensus 109 ~~~CaICl~~~~~~~---------------~v~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~l~~~~ 161 (203)
+.+|+||+++|..+. .++.++ |+|+||..||..|+ +.+.+||+||..+....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 468999999997643 344677 99999999999999 45668999999887653
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.50 E-value=1.4e-14 Score=104.47 Aligned_cols=50 Identities=30% Similarity=0.663 Sum_probs=42.6
Q ss_pred CCCcCccccCcccCCC---------------ceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 108 LDNECVICLSDFAPGE---------------RVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~---------------~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
.++.|+||+++|...- .++.++ |+|.||..||..||+.+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3578999999998541 356677 9999999999999999999999999854
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.49 E-value=9.3e-15 Score=97.26 Aligned_cols=53 Identities=23% Similarity=0.597 Sum_probs=45.0
Q ss_pred CCCCcCccccCcccCC----CceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPG----ERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
.++.+|+||++.+.+. +.+..++ |||.||..||..|++.+.+||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3457899999998763 4556777 999999999999999999999999988754
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=95.75 Aligned_cols=52 Identities=23% Similarity=0.608 Sum_probs=43.9
Q ss_pred CCCCcCccccCcccCC----CceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 107 GLDNECVICLSDFAPG----ERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
....+|+||++.|... ..+..++ |+|.||..||..|++.+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4457899999999764 3446777 99999999999999999999999998753
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.48 E-value=4.6e-14 Score=93.20 Aligned_cols=50 Identities=36% Similarity=0.834 Sum_probs=43.3
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
.+.+|+||++.+.++ ...++ |||.||..|+..|++.+.+||+||..+...
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 456899999998653 56787 999999999999999999999999988754
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=1.4e-14 Score=94.32 Aligned_cols=51 Identities=24% Similarity=0.627 Sum_probs=43.9
Q ss_pred CCcCccccCcccCC----CceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPG----ERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
+.+|+||++.+... +.+..++ |||.||..||..|++.+.+||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 46899999999753 4556777 999999999999999999999999988754
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.3e-14 Score=96.92 Aligned_cols=53 Identities=28% Similarity=0.727 Sum_probs=44.2
Q ss_pred CCCCCcCccccCcccCCCceeecCCCC-----ccccHhhHHHHHhcC--CCCcccccccccc
Q 042698 106 PGLDNECVICLSDFAPGERVRILPKCN-----HGFHVRCIDKWLRSN--SSCPKCRHCLIES 160 (203)
Q Consensus 106 ~~~~~~CaICl~~~~~~~~v~~l~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~ 160 (203)
...+..|.||++++.+++.+ ++| |+ |.||..||+.|+..+ .+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34567899999999877776 578 86 999999999999765 4899999988754
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.8e-14 Score=94.22 Aligned_cols=50 Identities=40% Similarity=0.902 Sum_probs=43.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
..+.+|+||++.+.. ..++ |+|.||..||..|++.+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 445789999999876 5677 9999999999999999899999999887553
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=91.73 Aligned_cols=51 Identities=25% Similarity=0.517 Sum_probs=43.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
.....|+||++.+.+. +..++ |+|.||..||..|++.+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 4567899999999774 44447 999999999999999889999999988754
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9e-14 Score=92.80 Aligned_cols=50 Identities=30% Similarity=0.537 Sum_probs=43.1
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
..+.+|+||++.+.+. ..++ |+|.||..||..|++.+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 3456899999998664 5667 999999999999999999999999998754
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.39 E-value=3.2e-14 Score=104.23 Aligned_cols=50 Identities=32% Similarity=0.707 Sum_probs=0.9
Q ss_pred CCCcCccccCcccCC-------------C--ceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 108 LDNECVICLSDFAPG-------------E--RVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~~-------------~--~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
.++.|+||+++|... + .+..++ |+|.||..||..|++.+.+||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 356899999999752 2 223345 9999999999999999999999999854
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.9e-13 Score=92.38 Aligned_cols=53 Identities=28% Similarity=0.614 Sum_probs=44.5
Q ss_pred CCCCcCccccCcccCCCc-eeecCCCCccccHhhHHHHHhcC---CCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGER-VRILPKCNHGFHVRCIDKWLRSN---SSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~-v~~l~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l~~~ 160 (203)
....+|+||++.|...+. ...++ |||.||..||..|++.+ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 455789999999988664 56777 99999999999999875 6899999987543
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.36 E-value=6.8e-13 Score=89.29 Aligned_cols=52 Identities=21% Similarity=0.535 Sum_probs=42.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC--CCCccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN--SSCPKCRHCLIESC 161 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~~ 161 (203)
..+..|+||++.|.++ ..++.|||.||..||..|++.+ ..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 4457899999999865 3455599999999999999865 58999999765443
No 22
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=9.7e-13 Score=88.64 Aligned_cols=51 Identities=27% Similarity=0.667 Sum_probs=42.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC--CCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN--SSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~ 160 (203)
+...+|+||.+.+..++... .|+|.||..||..||+.+ .+||+||..+...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 44578999999998764333 499999999999999887 7899999887643
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.8e-13 Score=90.66 Aligned_cols=48 Identities=23% Similarity=0.485 Sum_probs=41.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
.....|+||++.|... .+++ |+|.||..||..|++....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3456899999999763 4577 9999999999999998889999999875
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=8.5e-13 Score=86.70 Aligned_cols=50 Identities=20% Similarity=0.539 Sum_probs=41.3
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHh-cCCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 160 (203)
.....|+||++.+.++ ..++ |||.||..||..|+. .+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4457899999999875 2366 999999999999994 566899999987654
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=87.54 Aligned_cols=50 Identities=24% Similarity=0.573 Sum_probs=41.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHh---cCCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR---SNSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~l~~~ 160 (203)
..+..|+||++.+.+. ..++ |||.||..||..|++ .+..||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4457899999998753 4567 999999999999996 455799999988654
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.30 E-value=9.1e-13 Score=99.08 Aligned_cols=48 Identities=31% Similarity=0.855 Sum_probs=41.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
+..|+||++.|..+ ..++ |||.||..||..|+..+.+||+||..+...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 35799999999764 5677 999999999999999999999999988543
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.27 E-value=1.4e-12 Score=96.43 Aligned_cols=53 Identities=23% Similarity=0.581 Sum_probs=45.3
Q ss_pred CCCcCccccCcccCC----CceeecCCCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 108 LDNECVICLSDFAPG----ERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 108 ~~~~CaICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
+..+|+||++.|.++ +.+..++ |||.||..||..|++.+.+||+||..+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 456899999999764 4557777 9999999999999999999999999887554
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=6.7e-12 Score=81.54 Aligned_cols=43 Identities=28% Similarity=0.634 Sum_probs=36.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHh---cCCCCccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR---SNSSCPKC 153 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~C 153 (203)
..+..|+||++.+.+. ..++ |||.||..||..|++ .+..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999999864 4567 999999999999997 45579998
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.26 E-value=6.1e-12 Score=86.03 Aligned_cols=50 Identities=30% Similarity=0.517 Sum_probs=42.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc------CCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS------NSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~~ 160 (203)
..+.+|+||++.+... ..++ |+|.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 3457899999999775 4677 9999999999999987 56799999987643
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=4.5e-12 Score=85.79 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=41.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc-CCCCccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIE 159 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 159 (203)
..+..|+||++.|.++ ..++ |||.||..||..|+.. +.+||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 3457899999999764 4567 9999999999999987 7789999998764
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.26 E-value=2.6e-12 Score=91.37 Aligned_cols=48 Identities=27% Similarity=0.648 Sum_probs=40.5
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC-CCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN-SSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~ 159 (203)
+..|+||++.|... +..++ |||.||..||..|++.+ ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 46799999999763 33377 99999999999999887 689999998864
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.4e-12 Score=85.89 Aligned_cols=49 Identities=31% Similarity=0.609 Sum_probs=41.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc------CCCCccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS------NSSCPKCRHCLIE 159 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~ 159 (203)
....+|+||++.+... ..++ |+|.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3457899999999764 4567 9999999999999977 6789999998875
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.24 E-value=1.8e-12 Score=87.79 Aligned_cols=50 Identities=28% Similarity=0.495 Sum_probs=41.7
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc-------CCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-------NSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~l~~~ 160 (203)
..+.+|+||++.|.+. ..++ |||.||..||..|++. ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4467899999999775 4467 9999999999999976 56799999988753
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=7.4e-12 Score=79.73 Aligned_cols=43 Identities=30% Similarity=0.899 Sum_probs=35.8
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHh---cCCCCccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR---SNSSCPKC 153 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~C 153 (203)
..+..|+||++.+.+. ..++ |+|.||..||..|+. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4457899999999875 4467 999999999999954 56679998
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.22 E-value=6e-12 Score=89.11 Aligned_cols=48 Identities=31% Similarity=0.683 Sum_probs=40.9
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
...|+||++.|.++ +..++ |||.||..||..|+..+..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 35799999999763 33346 99999999999999988999999998775
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=6.1e-12 Score=82.30 Aligned_cols=51 Identities=24% Similarity=0.545 Sum_probs=40.5
Q ss_pred CCcCccccC-cccCCCce-eecCCCCccccHhhHHHHHhc-CCCCcccccccccc
Q 042698 109 DNECVICLS-DFAPGERV-RILPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~-~~~~~~~v-~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 160 (203)
+..|+||++ .+.++... ..++ |||.||..||..|+.. +..||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 467999999 77766543 3466 9999999999999754 45799999988654
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=5.2e-12 Score=93.32 Aligned_cols=53 Identities=23% Similarity=0.597 Sum_probs=44.6
Q ss_pred CCCCcCccccCcccCC----CceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPG----ERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
+....|+||++.+... .....++ |||.||..||+.|++.+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 3457899999998753 3446677 999999999999999999999999998765
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.21 E-value=6.6e-12 Score=90.34 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=42.3
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
.+..|+||++.|.+. +..++ |||.||..||..|+..+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 346899999999763 44447 999999999999999989999999988753
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.18 E-value=2e-11 Score=85.12 Aligned_cols=49 Identities=22% Similarity=0.585 Sum_probs=40.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC--CCCcccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN--SSCPKCRHCLI 158 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~ 158 (203)
..+..|+||++.|.++ ..++.|||.||..||..|+..+ ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4567899999999865 4555599999999999999643 58999999874
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.16 E-value=1.8e-11 Score=94.50 Aligned_cols=48 Identities=38% Similarity=0.728 Sum_probs=40.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc-CCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 159 (203)
...|+||++.|.+. +..++ |||.||..||..|+.. +..||+||..+..
T Consensus 54 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45899999999863 44457 9999999999999987 7789999998853
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.15 E-value=1.7e-11 Score=90.31 Aligned_cols=47 Identities=28% Similarity=0.570 Sum_probs=40.0
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC-CCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS-SCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~ 159 (203)
+..|+||++.|..+ ..++ |||.||..||..|+..+. .||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45799999999864 4567 999999999999998554 89999998865
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=3.2e-11 Score=86.91 Aligned_cols=48 Identities=29% Similarity=0.566 Sum_probs=39.8
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC---CCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS---SCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~l~~~ 160 (203)
...|+||++.+... ..++ |||.||..||..|+..+. .||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 35799999999765 3467 999999999999998654 799999987653
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.09 E-value=4.8e-11 Score=87.20 Aligned_cols=50 Identities=34% Similarity=0.642 Sum_probs=42.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC-CCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS-SCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 160 (203)
..+..|+||++.+..+ ..++ |||.||..||..|++.+. .||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4457899999999765 4567 999999999999997765 899999988753
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.08 E-value=2.3e-10 Score=77.76 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=41.6
Q ss_pred CCCCcCccccCcccCCCce-eecCCCCccccHhhHHHHHhc-CCCCccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERV-RILPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIESC 161 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v-~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~ 161 (203)
+++.+|+||++.+...+.. .-++ |||.||..|+..|+.. ...||+||..+....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 4557899999998754432 2345 9999999999998753 567999999887653
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.07 E-value=6.8e-11 Score=90.16 Aligned_cols=48 Identities=27% Similarity=0.561 Sum_probs=40.8
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC-CCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS-SCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 160 (203)
...|+||++.|..+ ..++ |||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45799999999764 4477 999999999999998655 799999988765
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.06 E-value=8e-11 Score=85.61 Aligned_cols=48 Identities=31% Similarity=0.546 Sum_probs=40.8
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc-CCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 160 (203)
+..|+||++.+.++ ..++ |||.||..||..|+.. +..||+||..+...
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 35799999999764 4477 9999999999999986 67899999988754
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.05 E-value=3.4e-11 Score=87.44 Aligned_cols=48 Identities=27% Similarity=0.643 Sum_probs=40.5
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc-CCCCccccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-NSSCPKCRHCLIE 159 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 159 (203)
.+..|+||++.+... ..++ |||.||..||..|+.. +..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 346799999999864 5567 9999999999999976 5679999998864
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.02 E-value=1.2e-10 Score=76.14 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=40.0
Q ss_pred CCCcCccccCcccCCCcee-ecCCCCcc-ccHhhHHHHHhcCCCCccccccccc
Q 042698 108 LDNECVICLSDFAPGERVR-ILPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~-~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
++.+|.||++...+. +. .+| |||. |+..|+..|.+.+..||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 346899999987653 22 238 9999 7899999999988899999998864
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=9e-11 Score=74.64 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=39.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
.+...|+||++.|... +.++ |||.||..||..| ...||+||..+....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 3456899999999875 5677 9999999999884 567999999887543
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.00 E-value=2.3e-10 Score=99.26 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=42.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHh-cCCCCcccccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLIESCK 162 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~~ 162 (203)
..+|+||++.+.. ...++ |||.||..|+..|+. .+.+||+||..+.....
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 4689999999865 46677 999999999999998 67889999998876543
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.96 E-value=6.4e-10 Score=76.72 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=42.7
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
.....|+||++-|.++ .+++ |||.|...||..|+..+.+||+||..+..
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3467899999999885 5677 99999999999999988899999988764
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.96 E-value=2.5e-10 Score=74.39 Aligned_cols=51 Identities=20% Similarity=0.390 Sum_probs=40.4
Q ss_pred CCCcCccccCcccCCCceeecCCCCcc-ccHhhHHHHHhcCCCCcccccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
.+.+|.||++...+. .+..+| |||. |+..|+..|.+.+..||+||..+...
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 356899999986553 122248 9998 99999999998888999999988643
No 53
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.96 E-value=2.8e-10 Score=96.69 Aligned_cols=55 Identities=27% Similarity=0.611 Sum_probs=41.9
Q ss_pred CCCCcCccccCcccCCCcee--e--cCCCCccccHhhHHHHHhcC-----------CCCccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVR--I--LPKCNHGFHVRCIDKWLRSN-----------SSCPKCRHCLIESC 161 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~--~--l~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~l~~~~ 161 (203)
+.+.+|+||++.+.++..+. . .+.|+|.||..||..|++.. .+||+||..+..+-
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 45678999999998744332 1 12499999999999999742 35999999887553
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.94 E-value=2e-10 Score=86.73 Aligned_cols=49 Identities=22% Similarity=0.416 Sum_probs=41.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC-CCccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS-SCPKCRHCLIE 159 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~ 159 (203)
..+..|+||++.+.++ ..++ |||.||..||..|++... .||+||..+..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4567899999999876 4467 999999999999998665 79999998643
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.91 E-value=9.1e-10 Score=78.30 Aligned_cols=49 Identities=16% Similarity=0.039 Sum_probs=42.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
.....|+||++-|.++ .+++ |||.|+..||..|+..+.+||+||..+..
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 3457899999999886 5677 99999999999999988899999988764
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.90 E-value=1.4e-09 Score=77.08 Aligned_cols=49 Identities=18% Similarity=0.057 Sum_probs=42.3
Q ss_pred CCCCcCccccCcccCCCceeecCCCC-ccccHhhHHHHHhcCCCCccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCN-HGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
..+..|+||++-|.++ .+++ || |.|...||..|+..+.+||+||..+..
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3457899999999886 4567 99 999999999999988899999988764
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=3.7e-10 Score=82.32 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=37.9
Q ss_pred CCcCccccCcccCCCceeec-CCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 109 DNECVICLSDFAPGERVRIL-PKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
...|+||++.|..+ ..+ + |||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 46899999999765 444 6 999999999999987 78999999874
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.82 E-value=8e-10 Score=74.17 Aligned_cols=44 Identities=23% Similarity=0.631 Sum_probs=37.4
Q ss_pred CCcCccccCcccCCCceeecCCCCcc-ccHhhHHHHHhcCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
+..|+||++.+.+ ...++ |||. |+..|+..| ..||+||..+...
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 3579999998766 35678 9999 999999998 7899999988754
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.79 E-value=3.3e-09 Score=68.42 Aligned_cols=48 Identities=23% Similarity=0.569 Sum_probs=36.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCC--c---cccHhhHHHHHhc--CCCCcccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCN--H---GFHVRCIDKWLRS--NSSCPKCRHCLI 158 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~--H---~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 158 (203)
++...|.||+++.. +.+ ++| |. | .||..|+..|+.. +.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34568999999843 334 467 54 4 9999999999964 567999998764
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.78 E-value=3.1e-09 Score=82.19 Aligned_cols=50 Identities=34% Similarity=0.638 Sum_probs=41.7
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC-CCCcccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN-SSCPKCRHCLIES 160 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~ 160 (203)
.....|+||++.+.++ ..++ |||.|+..||..|+... ..||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4557899999999875 4577 99999999999999764 4899999988654
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=7.6e-09 Score=85.27 Aligned_cols=49 Identities=16% Similarity=0.061 Sum_probs=41.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC-CCCccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN-SSCPKCRHCLIE 159 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~ 159 (203)
.....|+||++-|.++ .+++ |||.|+..||..|+..+ .+||+||..+..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3567899999999876 5677 99999999999999764 459999998864
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=6.4e-09 Score=72.75 Aligned_cols=50 Identities=26% Similarity=0.678 Sum_probs=40.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc--------CCCCcc--cccc--ccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS--------NSSCPK--CRHC--LIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~--l~~ 159 (203)
..+|+||++++..++.+...+ |+|.|+.+|+..|+.. ...||. ||.. +.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 468999999998776666667 9999999999999853 136999 9988 554
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=8.3e-09 Score=72.35 Aligned_cols=46 Identities=24% Similarity=0.529 Sum_probs=37.0
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC------CCCcc--cccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN------SSCPK--CRHC 156 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~ 156 (203)
.+..|+||++.|.++ |.... |||.|+..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dP--V~~~~-cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP--VKNKV-CGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE--EEESS-SCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC--EEcCC-CCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456899999999874 44324 99999999999999754 47999 9855
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2.5e-08 Score=65.83 Aligned_cols=48 Identities=29% Similarity=0.684 Sum_probs=39.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCcc-ccHhhHHHHHhcCCCCcccccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIESCK 162 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 162 (203)
.+...|.||++.... +..+| |+|. |+..|+.. ...||+||..+...-+
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEE
Confidence 345789999998655 57788 9999 99999984 4789999999887543
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.2e-08 Score=68.38 Aligned_cols=44 Identities=23% Similarity=0.634 Sum_probs=35.8
Q ss_pred CCcCccccCcccCCCceeecCCCCcc-ccHhhHHHHHhcCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
+.+|+||++.+.+ ...++ |||. |+..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 3579999999766 35678 9999 99999964 37899999988654
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.51 E-value=7.6e-08 Score=75.18 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=41.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC-CCCccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN-SSCPKCRHCLIE 159 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~ 159 (203)
.....|+||++-|.++ .+++ |||.|...||..|+..+ .+||+||..+..
T Consensus 104 p~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4567899999999875 4567 99999999999999764 469999988764
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.50 E-value=3.5e-08 Score=67.01 Aligned_cols=45 Identities=24% Similarity=0.575 Sum_probs=37.5
Q ss_pred CCcCccccCcccCCCceeecCCCCcc-ccHhhHHHHHhcCCCCccccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
+..|.||++.+.. ...+| |||. |+..|+..| ..||+||..+...-
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHVQ 63 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCeE
Confidence 3579999998765 46778 9999 999999987 38999999888653
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.1e-07 Score=78.24 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=39.8
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC--CCCcc--ccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN--SSCPK--CRHCLIE 159 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~l~~ 159 (203)
.+..|+||++.|.++ |+... |||.|++.||..|+..+ ..||+ ||..+..
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 345799999999765 65556 99999999999999764 36999 9987653
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.39 E-value=1.5e-07 Score=60.72 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=40.7
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
..|+||++.|.++ +...+ |||+|-+.||..|++.+.+||+++..+...
T Consensus 4 ~~CpIs~~~m~dP--V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP--VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE--EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC--EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 5799999999864 44325 999999999999998888899999888654
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.34 E-value=8.8e-08 Score=82.16 Aligned_cols=44 Identities=25% Similarity=0.705 Sum_probs=37.5
Q ss_pred CCcCccccCcccCCCceeecCCCCcc-ccHhhHHHHHhcCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHG-FHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
+..|+||++.+.. ...+| |||. ||..|+..| ..||+||..+...
T Consensus 295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 4689999999866 35678 9999 999999998 7899999988654
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.26 E-value=1e-06 Score=71.85 Aligned_cols=50 Identities=28% Similarity=0.656 Sum_probs=40.9
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC--CCcccccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS--SCPKCRHCLIES 160 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~l~~~ 160 (203)
...+|+||.+-+..+ ..++.|+|.||..|+..|++.+. .||.|+......
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 467899999998876 44555999999999999997654 799999876544
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.11 E-value=1.8e-06 Score=60.56 Aligned_cols=49 Identities=22% Similarity=0.452 Sum_probs=39.2
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHh-cCCCCcccccccccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLIESCK 162 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~~ 162 (203)
-|.+|--++.. ..|..| |+|+|+.+|+..|.+ ..+.||+|+..+..-+.
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 47888666543 468899 999999999999985 46789999998886554
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.82 E-value=0.0011 Score=43.01 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=36.0
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC----CCcccccccc
Q 042698 106 PGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS----SCPKCRHCLI 158 (203)
Q Consensus 106 ~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~l~ 158 (203)
...+..|.||.+. ..+.....|...||..|++..+.... .||.|+....
T Consensus 9 ~~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 9 LAPGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CCTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 3445679999753 34556667999999999998876543 5999976543
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.86 E-value=0.0098 Score=40.95 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=38.4
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESCKK 163 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 163 (203)
.-|-.|+-+.+. ++.. .+|.++..|+..-|.....||+|+..+...-..
T Consensus 29 ~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 29 QFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 469999966542 3332 469999999999988889999999998876444
No 75
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.67 E-value=0.003 Score=40.46 Aligned_cols=49 Identities=24% Similarity=0.525 Sum_probs=36.7
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHh-----cCCCCccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-----SNSSCPKCRH 155 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~ 155 (203)
++...|+||...+.++..++....|...||..|+..-.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 345679999998876666777777999999999975432 2345999975
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.44 E-value=0.019 Score=38.73 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=24.9
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCccccHhhHHHH
Q 042698 106 PGLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 106 ~~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 143 (203)
...++.|.|| +.+..++... ..-|+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC-~~~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVC-EVWTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTT-CCCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcc-ccccccceec-cccccccccHhhcccc
Confidence 4567889999 3444443322 2239999999999995
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=94.87 E-value=0.011 Score=45.90 Aligned_cols=49 Identities=20% Similarity=0.418 Sum_probs=37.3
Q ss_pred CcCccccCcccCCCc---eeecCCCCccccHhhHHHH------Hh-----cCCCCcccccccc
Q 042698 110 NECVICLSDFAPGER---VRILPKCNHGFHVRCIDKW------LR-----SNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~---v~~l~~C~H~FH~~Ci~~W------l~-----~~~~CP~CR~~l~ 158 (203)
..|+||...|.+++. ++.+..|...||..|+..= +. ..-.||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 569999999988763 7777789999999998431 11 1457999987544
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.70 E-value=0.027 Score=38.89 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=25.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 143 (203)
+..|.||++.+..+....-+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 357999998754433344466 9999999999984
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.40 E-value=0.026 Score=35.71 Aligned_cols=46 Identities=22% Similarity=0.647 Sum_probs=33.1
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC----CCCcccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN----SSCPKCRHC 156 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 156 (203)
..+..|.+|.+. ..+.....|...||..|+..-+... -.||.|+..
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345689999863 3566666799999999999754322 259999653
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.08 E-value=0.015 Score=38.22 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=35.8
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc----CCCCcccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS----NSSCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~ 158 (203)
+...|.||..... ++.++....|...||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456999987653 4456677779999999999865432 235999977654
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=93.60 E-value=0.037 Score=42.69 Aligned_cols=47 Identities=23% Similarity=0.474 Sum_probs=34.2
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC----CCcccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS----SCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~l~ 158 (203)
+++.|.+|.+. ..+..+..|...||..|+..-+.... .||.|+..-.
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45679999744 33566667999999999987665322 5999986543
No 82
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=93.46 E-value=0.064 Score=34.42 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=28.3
Q ss_pred CCCcCccccCcccCCCceeecC-CCCccccHhhHH
Q 042698 108 LDNECVICLSDFAPGERVRILP-KCNHGFHVRCID 141 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~-~C~H~FH~~Ci~ 141 (203)
....|.+|..++.+++.++... .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3457999999998888888887 799999999984
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=93.05 E-value=0.024 Score=35.89 Aligned_cols=47 Identities=19% Similarity=0.486 Sum_probs=32.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC----CCCccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN----SSCPKCRHCL 157 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~l 157 (203)
..+..|.||.+. ..+.....|...||..|+..-+... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345679999752 3455556699999999998644332 2499997643
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.05 E-value=0.075 Score=35.30 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=34.9
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHh-----cCCCCcccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-----SNSSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l~ 158 (203)
...| ||...+.....++....|...||..|+..-.. ..-.||.|+...-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3457 99888765566777777999999999953221 2345999987543
No 85
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=93.05 E-value=0.013 Score=36.95 Aligned_cols=49 Identities=20% Similarity=0.674 Sum_probs=34.3
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC----CCCcccccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN----SSCPKCRHCLIES 160 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~l~~~ 160 (203)
.+..|.+|... ..+.....|...||..|+..=+... -.||.|+......
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 35679999864 3455566799999999998644332 2499997665543
No 86
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=92.80 E-value=0.026 Score=44.50 Aligned_cols=47 Identities=26% Similarity=0.454 Sum_probs=34.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC----CCccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS----SCPKCRHCL 157 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~l 157 (203)
..+..|.+|... ..+..+..|...||..|+...+.... .||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345679999743 34667778999999999987665332 599998643
No 87
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=92.34 E-value=0.048 Score=33.28 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=32.1
Q ss_pred cCccccCcccCCCceeecC-CCCccccHhhHHHHH----hcCCCCcccc
Q 042698 111 ECVICLSDFAPGERVRILP-KCNHGFHVRCIDKWL----RSNSSCPKCR 154 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~-~C~H~FH~~Ci~~Wl----~~~~~CP~CR 154 (203)
.|.+|...+.+++.++... .|...||..|+..-. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4779998887666677776 699999999985422 2455699885
No 88
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.29 E-value=0.074 Score=32.10 Aligned_cols=44 Identities=25% Similarity=0.677 Sum_probs=30.3
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHhcC----CCCccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN----SSCPKCRH 155 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 155 (203)
.|.||...-.. +.+.....|...||..|+..=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48899865433 3455666799999999997544322 24999965
No 89
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=91.93 E-value=0.03 Score=35.99 Aligned_cols=45 Identities=24% Similarity=0.621 Sum_probs=32.1
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC----CCCccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN----SSCPKCRH 155 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 155 (203)
..+..|.||.+. ..+.....|...||..|+..-+... -.||.|+.
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 346789999864 3455666799999999998644332 24999964
No 90
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.79 E-value=0.029 Score=34.81 Aligned_cols=45 Identities=24% Similarity=0.776 Sum_probs=31.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC----CCccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS----SCPKCRH 155 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~ 155 (203)
..+..|.+|.+. ..+.....|...||..|+..=+.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345679999864 34555667999999999986443322 4888854
No 91
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=91.68 E-value=0.071 Score=34.83 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=34.2
Q ss_pred CCCCcCccccCcc-cCCCceeecCCCCccccHhhHHHHHh--cCCCCccccc
Q 042698 107 GLDNECVICLSDF-APGERVRILPKCNHGFHVRCIDKWLR--SNSSCPKCRH 155 (203)
Q Consensus 107 ~~~~~CaICl~~~-~~~~~v~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~ 155 (203)
..+..|.||.+.- .+++.+.....|.-.||..|+..-.. ..=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4567899998753 34456777778999999999975321 1224888865
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.46 E-value=0.12 Score=35.24 Aligned_cols=46 Identities=24% Similarity=0.550 Sum_probs=33.3
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC----CCcccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS----SCPKCRHC 156 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 156 (203)
.++..|.+|.+. + .+.....|.-.||..|+..=+.... .||.|+..
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999864 2 4556667999999999977554322 59999764
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=91.26 E-value=0.069 Score=36.36 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=35.2
Q ss_pred CCCCcCccccCcc-cCCCceeecCCCCccccHhhHHHHHh--cCCCCccccccc
Q 042698 107 GLDNECVICLSDF-APGERVRILPKCNHGFHVRCIDKWLR--SNSSCPKCRHCL 157 (203)
Q Consensus 107 ~~~~~CaICl~~~-~~~~~v~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~l 157 (203)
+++..|.||.+.- ...+.+.....|.-.||..|+..-+. ..-.||.|+...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4567899998753 23346677777999999999986321 122599996543
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=90.81 E-value=0.071 Score=37.84 Aligned_cols=45 Identities=27% Similarity=0.597 Sum_probs=32.3
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHhcC----CCCccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN----SSCPKCRH 155 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 155 (203)
.|.||.+.-.+++.+.....|...||..|++.-+... =.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6889986544445666666799999999997655432 25999974
No 95
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.40 E-value=0.16 Score=33.39 Aligned_cols=47 Identities=21% Similarity=0.440 Sum_probs=32.3
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHH---------hcCCCCccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWL---------RSNSSCPKCRHCL 157 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~l 157 (203)
...| ||...+. +..++....|...||..|+..-. ..+-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3457 8988765 34566666799999999994321 2355799997543
No 96
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=90.04 E-value=0.069 Score=40.67 Aligned_cols=48 Identities=21% Similarity=0.463 Sum_probs=34.7
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHH-----hcCCCCcccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWL-----RSNSSCPKCRHC 156 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~ 156 (203)
....| +|......+..++.+..|...||..|+..-. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34579 9998876566677777899999999995321 123469999764
No 97
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=89.99 E-value=0.19 Score=35.25 Aligned_cols=48 Identities=19% Similarity=0.377 Sum_probs=35.5
Q ss_pred CcCccccCcccCCCceeecC-CCCccccHhhHHHHH---h-------cCCCCccccccc
Q 042698 110 NECVICLSDFAPGERVRILP-KCNHGFHVRCIDKWL---R-------SNSSCPKCRHCL 157 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~-~C~H~FH~~Ci~~Wl---~-------~~~~CP~CR~~l 157 (203)
..|.||...+.++..++... .|...||..|+..=- + .+-.||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46999999987776777775 699999999995321 0 233599998653
No 98
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=89.61 E-value=0.12 Score=36.36 Aligned_cols=47 Identities=21% Similarity=0.519 Sum_probs=31.7
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhc----CCCCcccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS----NSSCPKCR 154 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR 154 (203)
.++..|.||.+.-...+ +.....|+..||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~-ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLD-QFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTT-SEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcC-CeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 35678999987643322 3444569999999999887642 22477664
No 99
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=89.25 E-value=0.11 Score=33.65 Aligned_cols=46 Identities=26% Similarity=0.535 Sum_probs=31.8
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHh---cCCCCccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR---SNSSCPKCRH 155 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 155 (203)
+...| ||..... ++.++....|...||..|+..--. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34568 9987665 445666667999999999975321 2335999865
No 100
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.08 E-value=0.076 Score=34.60 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=33.2
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHH----hcCCCCcccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWL----RSNSSCPKCRHC 156 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~ 156 (203)
...| ||......++.++....|...||..|+..-- ..+-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3458 7988765555567777799999999997532 123359999754
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=89.08 E-value=0.32 Score=31.65 Aligned_cols=45 Identities=24% Similarity=0.582 Sum_probs=29.9
Q ss_pred CCCCcCccccCcccCCCceeecCC--CC-ccccHhhHHHHHhcC----CCCcccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPK--CN-HGFHVRCIDKWLRSN----SSCPKCRHC 156 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~Wl~~~----~~CP~CR~~ 156 (203)
.+...| ||..... + .++.... |. ..||..|+. |... -.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 344568 8987642 3 4666666 66 799999998 4332 259999764
No 102
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=88.46 E-value=0.27 Score=31.14 Aligned_cols=50 Identities=24% Similarity=0.652 Sum_probs=35.2
Q ss_pred CCCCcCccccCccc-CCCceeecCCCCccccHhhHHHHHh-------cCCCCcccccc
Q 042698 107 GLDNECVICLSDFA-PGERVRILPKCNHGFHVRCIDKWLR-------SNSSCPKCRHC 156 (203)
Q Consensus 107 ~~~~~CaICl~~~~-~~~~v~~l~~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~ 156 (203)
.++..|.||..... .+..+.....|...||..|+..=+. ..-.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999997643 3346667777999999999986332 12259999654
No 103
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.39 E-value=0.29 Score=33.51 Aligned_cols=44 Identities=25% Similarity=0.592 Sum_probs=29.3
Q ss_pred CCCcCccccCcccCCCceeecCC--CC-ccccHhhHHHHHhc----CCCCcccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPK--CN-HGFHVRCIDKWLRS----NSSCPKCRHC 156 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~ 156 (203)
+...| ||..... + .++.... |. ..||..|+. |.. +-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 34568 9987643 3 4555556 55 789999998 332 2359999764
No 104
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=88.31 E-value=2.5 Score=25.86 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 35 SNAVIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 35 ~~~iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
++++++++++...+++++++..++.|-+-+
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 445555555555555555555555554333
No 105
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=88.06 E-value=0.12 Score=40.22 Aligned_cols=44 Identities=25% Similarity=0.562 Sum_probs=31.3
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcC----CCCcccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN----SSCPKCRHC 156 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 156 (203)
+..|.+|.+. + .+..+..|...||..|+..=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999854 3 345556699999999997644322 259999866
No 106
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=87.27 E-value=0.27 Score=33.96 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=30.7
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhc---CCCCcccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS---NSSCPKCRHC 156 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~ 156 (203)
..| ||-.....+ .++....|...||..|+..=+.. .-.||.|+..
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 458 887665444 55666679999999999753221 2359999743
No 107
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.99 E-value=1.1 Score=31.44 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=30.6
Q ss_pred CCcCccccCcc-----cCCCceeecCCCCccccHhhHHHH------Hh-cCCCCcccc
Q 042698 109 DNECVICLSDF-----APGERVRILPKCNHGFHVRCIDKW------LR-SNSSCPKCR 154 (203)
Q Consensus 109 ~~~CaICl~~~-----~~~~~v~~l~~C~H~FH~~Ci~~W------l~-~~~~CP~CR 154 (203)
...|.+|+..- ..++.+.....|+..||..|+..+ +. ..=.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 46799998763 223456666679999999999532 22 223577775
No 108
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=86.63 E-value=2.7 Score=25.71 Aligned_cols=30 Identities=20% Similarity=0.084 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 35 SNAVIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 35 ~~~iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
++++|+++++...+++++++..++++-+-+
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 445556666655555555555555554433
No 109
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=86.31 E-value=0.93 Score=33.55 Aligned_cols=46 Identities=24% Similarity=0.527 Sum_probs=33.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHHh-----------cCCCCcccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-----------SNSSCPKCRHC 156 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~~ 156 (203)
+.++.|.+|-+- -.+.....|-..||..||..=+. ..=.||+|+..
T Consensus 61 g~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 456789999754 34556667999999999997652 12259999754
No 110
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=85.46 E-value=0.69 Score=32.56 Aligned_cols=46 Identities=20% Similarity=0.515 Sum_probs=31.1
Q ss_pred CCCCcCccccCcccCCCceeecC--CCCccccHhhHHHHHhcCC----CCcccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILP--KCNHGFHVRCIDKWLRSNS----SCPKCRHCLI 158 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~l~ 158 (203)
..+..|.+|.+ +..+.... .|...||..|+. |.... .||.|+..+-
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 45678999983 23455655 598999999998 44322 4887765444
No 111
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.99 E-value=0.41 Score=31.56 Aligned_cols=47 Identities=19% Similarity=0.435 Sum_probs=31.6
Q ss_pred CCCcCccccCcccCCCceeecC--CCCccccHhhHHHHHh---------cCCCCcccccc
Q 042698 108 LDNECVICLSDFAPGERVRILP--KCNHGFHVRCIDKWLR---------SNSSCPKCRHC 156 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~ 156 (203)
....| ||-..... ..++... .|...||..|+..--. .+-.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~-g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLET-DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCC-SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCC-CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34568 79877433 3556666 6999999999964221 23459999764
No 112
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.95 E-value=0.19 Score=34.44 Aligned_cols=48 Identities=21% Similarity=0.515 Sum_probs=33.5
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC----CCcccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS----SCPKCRHC 156 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 156 (203)
++..|.||...-. .+.+.....|...||..|+..=+.... .||.|+..
T Consensus 15 ~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4457999987643 345666667999999999985333222 49999764
No 113
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=84.82 E-value=0.23 Score=31.07 Aligned_cols=43 Identities=26% Similarity=0.572 Sum_probs=28.8
Q ss_pred CCCcCccccCcccCCCceeecCC--CC-ccccHhhHHHHHhcC----CCCccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPK--CN-HGFHVRCIDKWLRSN----SSCPKCRH 155 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~Wl~~~----~~CP~CR~ 155 (203)
+...| ||.... . ..++.... |. ..||..|+. +... -.||.|+.
T Consensus 8 e~~yC-~C~~~~-~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-Y-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-C-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-C-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34567 898764 2 34666666 66 799999998 4332 25999964
No 114
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=84.57 E-value=1.5 Score=31.85 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=32.9
Q ss_pred CCCCcCccccCcccCCCceeecCCCCccccHhhHHHHH------hc-----CCCCcccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWL------RS-----NSSCPKCRHC 156 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl------~~-----~~~CP~CR~~ 156 (203)
+.++.|.||-+- ..+.....|-..||..||..-+ +. .=.|++|+..
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 456789999854 3455666799999999999752 11 1259999764
No 115
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=84.51 E-value=1.3 Score=28.30 Aligned_cols=25 Identities=20% Similarity=-0.194 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 042698 44 LVCGIICSLGLHFLIRCILVSWSRL 68 (203)
Q Consensus 44 l~~~~i~~l~~~~~~~~~~rr~~~~ 68 (203)
+..++.+++++.+.+.|..|+|+|+
T Consensus 14 lGg~~~lll~~glcI~ccvkcrhRr 38 (70)
T 2klu_A 14 LGGVAGLLLFIGLGIFFSVRSRHRR 38 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3333334444445555555554443
No 116
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=82.69 E-value=1 Score=31.85 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=29.9
Q ss_pred CcCccccCccc------CCCceeecCCCCccccHhhHHHHH------h-cCCCCcccc
Q 042698 110 NECVICLSDFA------PGERVRILPKCNHGFHVRCIDKWL------R-SNSSCPKCR 154 (203)
Q Consensus 110 ~~CaICl~~~~------~~~~v~~l~~C~H~FH~~Ci~~Wl------~-~~~~CP~CR 154 (203)
+.|.||+..-. .++.+.....|+..||..|+..+. . ..=.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999987542 224566666799999999997652 1 233577764
No 117
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=81.99 E-value=0.33 Score=30.41 Aligned_cols=42 Identities=24% Similarity=0.607 Sum_probs=27.9
Q ss_pred CCcCccccCcccCCCceeecCC--CC-ccccHhhHHHHHhcC----CCCccccc
Q 042698 109 DNECVICLSDFAPGERVRILPK--CN-HGFHVRCIDKWLRSN----SSCPKCRH 155 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~Wl~~~----~~CP~CR~ 155 (203)
...| ||..... ..++.... |. ..||..|+. +... -.||.|+.
T Consensus 10 ~~~C-~C~~~~~--g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC--SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC--CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4567 8987632 34666666 55 789999998 4332 25999964
No 118
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.84 E-value=0.47 Score=32.09 Aligned_cols=50 Identities=18% Similarity=0.468 Sum_probs=35.8
Q ss_pred CCcCccccCcccC-CCceeecCCCCccccHhhHHHHHhc--------CCCCcccccccc
Q 042698 109 DNECVICLSDFAP-GERVRILPKCNHGFHVRCIDKWLRS--------NSSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~~-~~~v~~l~~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~l~ 158 (203)
+..|.||...-.. +..+.....|...||..|+..=+.. .=.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4579999876432 3467777789999999999875431 225999976554
No 119
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=80.55 E-value=0.34 Score=29.32 Aligned_cols=42 Identities=26% Similarity=0.581 Sum_probs=28.0
Q ss_pred cccCcccCCCceeecCCCCccccHhhHHHHHh---cCCCCcccccc
Q 042698 114 ICLSDFAPGERVRILPKCNHGFHVRCIDKWLR---SNSSCPKCRHC 156 (203)
Q Consensus 114 ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~ 156 (203)
||..... +..++....|+..||..|+..--. .+-.||.|+.+
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~S 52 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 52 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHTC
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCCc
Confidence 6766544 445666667999999999964321 23359999753
No 120
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=79.68 E-value=0.48 Score=29.90 Aligned_cols=43 Identities=30% Similarity=0.608 Sum_probs=28.4
Q ss_pred CCCcCccccCcccCCCceeecCC--CC-ccccHhhHHHHHhc----CCCCccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPK--CN-HGFHVRCIDKWLRS----NSSCPKCRH 155 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 155 (203)
+...| ||.... .+ .++.... |. ..||..|+. |.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34567 898753 23 4666666 44 899999998 332 235999965
No 121
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=78.64 E-value=0.29 Score=32.39 Aligned_cols=44 Identities=30% Similarity=0.717 Sum_probs=28.9
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHhcC-----CCCccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN-----SSCPKCRH 155 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~ 155 (203)
.|.||...- +++.+.....|...||..|+..-|... =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665442 334566666799999999998655431 25999875
No 122
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.33 E-value=0.68 Score=30.53 Aligned_cols=45 Identities=22% Similarity=0.604 Sum_probs=30.6
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhc-----CCCCccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-----NSSCPKCRH 155 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 155 (203)
..|.||...- .+..+.....|...||..|+..=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3688997643 33456666679999999999854432 225888864
No 123
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=73.45 E-value=0.68 Score=29.91 Aligned_cols=44 Identities=30% Similarity=0.741 Sum_probs=29.1
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHhc-----CCCCccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-----NSSCPKCRH 155 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 155 (203)
.|.||...- .+..+.....|...||..|+..=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776532 23456666679999999999854432 225998864
No 124
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=72.90 E-value=5.3 Score=23.08 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 35 SNAVIVLSVLVCGIICSLGLHFLIRC 60 (203)
Q Consensus 35 ~~~iiii~il~~~~i~~l~~~~~~~~ 60 (203)
++++++++++...+++++++..++++
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455555555555544444444433
No 125
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.53 E-value=2.5 Score=27.21 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=28.6
Q ss_pred CCcCccccCcccCCCceeecCCCC---ccccHhhHHHHH--hcCCCCcccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCN---HGFHVRCIDKWL--RSNSSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~---H~FH~~Ci~~Wl--~~~~~CP~CR~~l~ 158 (203)
...| ||.... .+ .++....|+ ..||..|+..-- ..+-.||.|+....
T Consensus 6 ~~yC-~C~~~~-~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 6 SGYC-ICNQVS-YG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCCS-TTSCCC-CS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CeEE-EcCCCC-CC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCcccc
Confidence 3457 587653 33 455555553 799999998311 11235999976653
No 126
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=72.51 E-value=1.1 Score=23.98 Aligned_cols=28 Identities=25% Similarity=0.498 Sum_probs=20.4
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhH
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCI 140 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci 140 (203)
+.|+.|-..+-..+.+.. -|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 479999888766554442 5789999884
No 127
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=72.27 E-value=1.6 Score=38.81 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=34.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHh-----cCCCCcccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-----SNSSCPKCRHCLI 158 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l~ 158 (203)
...| ||...+..+..++.+..|.-.||..|+.---. .+-.||.|+....
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 3457 89887765666777778999999999954221 1235999986543
No 128
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=71.41 E-value=1.2 Score=35.46 Aligned_cols=44 Identities=30% Similarity=0.741 Sum_probs=26.7
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHhc-----CCCCccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRS-----NSSCPKCRH 155 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 155 (203)
.|.+|...- .+..+..+..|...||..|+..=|.. .=.||.|+.
T Consensus 176 ~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577886542 23455566679999999999854432 125999965
No 129
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=71.18 E-value=0.97 Score=39.70 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=32.8
Q ss_pred ccccCcccCCCceeecCCCCccccHhhHHHHHh-----cCCCCcccccccc
Q 042698 113 VICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-----SNSSCPKCRHCLI 158 (203)
Q Consensus 113 aICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l~ 158 (203)
-||...+..+..++.+..|.-.||..|+.---. .+-.||.|+....
T Consensus 8 CiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 8 CLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp TTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred EeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 388877765566777778999999999953211 2346999976544
No 130
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=70.35 E-value=0.43 Score=33.84 Aligned_cols=47 Identities=21% Similarity=0.642 Sum_probs=31.8
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHhcCC----CCcccccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNS----SCPKCRHCLI 158 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~l~ 158 (203)
.|.||...-. +..+.....|...||..|+..=+.... .||.|+..+.
T Consensus 60 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCC-CCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 5888876533 345566667999999999986443322 4999976543
No 131
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.76 E-value=0.77 Score=32.13 Aligned_cols=45 Identities=24% Similarity=0.696 Sum_probs=30.1
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHHHHhcC----CCCcccccc
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSN----SSCPKCRHC 156 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 156 (203)
.|.+|...-. ++.+.....|...||..|+..=+... -.||.|+..
T Consensus 56 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 4777765533 23566666799999999998644322 248888654
No 132
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=69.41 E-value=1.4 Score=29.98 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=28.2
Q ss_pred CCCcCccccCcccCCCceeecCCCC---ccccHhhHHHHH--hcCCCCcc-ccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCN---HGFHVRCIDKWL--RSNSSCPK-CRH 155 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~---H~FH~~Ci~~Wl--~~~~~CP~-CR~ 155 (203)
+...| ||..... + .++....|+ ..||..|+..=- ..+-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 34568 8987532 3 356666665 799999997210 11235999 973
No 133
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=68.95 E-value=3.9 Score=26.28 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=24.0
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHH
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDK 142 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 142 (203)
..|.+|...|..-..-.-...||++|+..|-..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 579999999875432233445999999999754
No 134
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=67.73 E-value=3.8 Score=25.40 Aligned_cols=42 Identities=26% Similarity=0.618 Sum_probs=30.8
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
...|+.|-..+...+.+... -+..||..|+ .|-.|...+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 35799999998877655432 5778998887 477787777654
No 135
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=67.60 E-value=3.2 Score=26.84 Aligned_cols=47 Identities=19% Similarity=0.422 Sum_probs=33.2
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHh-----cCCCCccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-----SNSSCPKCRHCL 157 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l 157 (203)
..| ||...+..+..++....|.-.||..|+..--. ..-.||.|+...
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 345 88877665566777777999999999964321 234599997653
No 136
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=66.83 E-value=5.4 Score=38.28 Aligned_cols=49 Identities=20% Similarity=0.066 Sum_probs=40.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCC-ccccHhhHHHHHhcCCCCccccccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILPKCN-HGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
.+...|+|-++-|.++ .+++ -| +.|-..+|..|+..+.+||.=|..+..
T Consensus 889 P~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3456799999998875 4566 66 689999999999999999999887764
No 137
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=66.29 E-value=11 Score=21.96 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042698 38 VIVLSVLVCGIICSLGLHFLIRCILVS 64 (203)
Q Consensus 38 iiii~il~~~~i~~l~~~~~~~~~~rr 64 (203)
.++.+++. +++++++.+.+..+.||
T Consensus 13 ~Ia~~vVG--vll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 13 SIISAVVG--ILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHH--HHHHHHHHHHHHhheeh
Confidence 34445544 33333333333333333
No 138
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.96 E-value=4.2 Score=29.14 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=24.7
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHH
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 143 (203)
..|.+|...|..-..-.-...||++|+..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 5799999999754322344469999999987653
No 139
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=65.58 E-value=5 Score=26.53 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=25.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 143 (203)
...|.+|...|..-..-.-...||++|+..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45799999999754333334469999999997654
No 140
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=65.34 E-value=4.7 Score=27.09 Aligned_cols=50 Identities=18% Similarity=0.421 Sum_probs=33.2
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHh------cCCCCccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR------SNSSCPKCRHCLIE 159 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~l~~ 159 (203)
..|.+|...|.--..-.....||++|+..|...++. ..+.|-.|-..+..
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 579999999875433334446999999999877542 12247777555443
No 141
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.17 E-value=5 Score=26.90 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=33.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHh-------cCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-------SNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~l~~ 159 (203)
...|.+|...|..-..-.-...||++|+..|....+. ..+.|-.|-..+..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 4579999999875433333446999999999866431 12347777655543
No 142
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=64.79 E-value=22 Score=23.53 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=28.6
Q ss_pred CCCcCccccCcccCCCceeecC-CCCccccHhhHHHHHhc
Q 042698 108 LDNECVICLSDFAPGERVRILP-KCNHGFHVRCIDKWLRS 146 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~-~C~H~FH~~Ci~~Wl~~ 146 (203)
....|.+|.+.+++..-| ++| .=.|.|+..|-...+++
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 446799999999876444 333 23699999999999864
No 143
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=64.48 E-value=5.2 Score=26.31 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=25.4
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 143 (203)
...|.+|...|..-..-.-...||.+|+..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 35799999999754322334469999999998654
No 144
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.86 E-value=3.8 Score=32.12 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=25.3
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 143 (203)
+..|.+|...|.--..-.-+..||++|+..|-...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999998754322334469999999887654
No 145
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=63.26 E-value=4.6 Score=29.39 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=30.8
Q ss_pred CCCCcCccccCccc-CCCceeecCCCCccccHhhHHHHHh-cCC---CCccccc
Q 042698 107 GLDNECVICLSDFA-PGERVRILPKCNHGFHVRCIDKWLR-SNS---SCPKCRH 155 (203)
Q Consensus 107 ~~~~~CaICl~~~~-~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~---~CP~CR~ 155 (203)
..+..|++|...|. ....-+....|+|.++..|-..--. .+. .|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 35678999999994 2223345556999999888654211 111 2777754
No 146
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.07 E-value=4.9 Score=25.17 Aligned_cols=39 Identities=23% Similarity=0.622 Sum_probs=27.5
Q ss_pred CcCccccCcccC--CCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAP--GERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~--~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|+-|-..+.. ++.+... -+..||.+|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISF--EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEEC--SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEE--CCcccCcccC--------EeccCCCcCC
Confidence 579999998875 3333332 6788998876 4777877765
No 147
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=62.41 E-value=1.3 Score=31.82 Aligned_cols=47 Identities=21% Similarity=0.472 Sum_probs=31.3
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHC 156 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 156 (203)
..|..|-..|..-..-.....||.+|+..|....+...+.|-.|-..
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 57999999987533223444699999999987765555668777543
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.29 E-value=4.2 Score=32.10 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=25.8
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKW 143 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 143 (203)
+..|.+|...|.--..-.-+..||++|+..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45899999998754323344569999999997654
No 149
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=62.12 E-value=21 Score=24.05 Aligned_cols=51 Identities=18% Similarity=0.362 Sum_probs=35.0
Q ss_pred CCCcCccccCcccCC---CceeecCCCCccccHhhHHHHHh-cCCCCcccccccc
Q 042698 108 LDNECVICLSDFAPG---ERVRILPKCNHGFHVRCIDKWLR-SNSSCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~~---~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~ 158 (203)
....|.||-+++-.. +.-.....|+--.++.|.+-=.+ .++.||-|+...-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 346899999996533 22223334777788999976554 4667999988765
No 150
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=61.42 E-value=7.6 Score=33.15 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=28.4
Q ss_pred CcCccccCcccCCCceeecCCCCcc--ccHhhHHHHHhcC--CCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHG--FHVRCIDKWLRSN--SSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~--FH~~Ci~~Wl~~~--~~CP~CR~~l~ 158 (203)
..|++=...+.. .+|-.. |.|. |=..=+.....+. -.||+|...+.
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 469987776655 477777 9997 4332232222222 35999987663
No 151
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.92 E-value=5.7 Score=25.17 Aligned_cols=40 Identities=23% Similarity=0.554 Sum_probs=29.4
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
...|+.|-..+..++.+.. -+..||.+|+. |-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF~--------C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCLK--------CERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTCB--------CSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCCC--------CCCCCCccCC
Confidence 4679999999887665543 57889987753 7778777654
No 152
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.73 E-value=6.3 Score=25.98 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=23.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDK 142 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 142 (203)
...|.+|..+|..-..-.-...||.+|+..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3579999999865332223345999999988544
No 153
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=58.72 E-value=9.6 Score=24.25 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042698 38 VIVLSVLVCGIICSLGLHFLIRCILVSWSR 67 (203)
Q Consensus 38 iiii~il~~~~i~~l~~~~~~~~~~rr~~~ 67 (203)
+++-+++.++++..+.+++..+|..|+++.
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqA 41 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQA 41 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSC
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333444444444444455467777666444
No 154
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=58.09 E-value=9.4 Score=32.44 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=28.9
Q ss_pred CcCccccCcccCCCceeecCCCCcc--ccHhhHHHHHhcC--CCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHG--FHVRCIDKWLRSN--SSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~--FH~~Ci~~Wl~~~--~~CP~CR~~l~ 158 (203)
..|++=...+.. .+|-.. |.|. |=..=+.....+. -.||+|...+.
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 469987766655 477777 9997 4433333322333 35999988664
No 155
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=56.55 E-value=4.9 Score=24.99 Aligned_cols=42 Identities=29% Similarity=0.619 Sum_probs=28.8
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHh-cCCCCccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR-SNSSCPKC 153 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~C 153 (203)
..|--|...+... .....+.|++.|+.+|=. ++. .=.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 4599999998543 234566799999999843 332 33469988
No 156
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.93 E-value=16 Score=23.96 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042698 40 VLSVLVCGIICSLGLHFL 57 (203)
Q Consensus 40 ii~il~~~~i~~l~~~~~ 57 (203)
++++++.++++.++++++
T Consensus 14 v~gvi~gilliGllllli 31 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLI 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444333333333333
No 157
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=55.41 E-value=2.3 Score=29.68 Aligned_cols=27 Identities=37% Similarity=0.672 Sum_probs=17.5
Q ss_pred CCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 130 KCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 130 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
.||+.|. + =+.....||.|++.-++.+
T Consensus 72 ~CG~~F~----~-~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVFK----A-EINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBCC----C-CSSCCSSCSSSCCCCBCCC
T ss_pred hCcCeec----c-cCCCCCCCcCCCCCccCCc
Confidence 4999981 1 1233456999998766554
No 158
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=55.30 E-value=12 Score=21.74 Aligned_cols=9 Identities=33% Similarity=0.777 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 042698 52 LGLHFLIRC 60 (203)
Q Consensus 52 l~~~~~~~~ 60 (203)
+.+.+++|.
T Consensus 29 ~~~~~~~RR 37 (44)
T 2ks1_B 29 LGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 333344443
No 159
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.76 E-value=6.7 Score=24.75 Aligned_cols=43 Identities=26% Similarity=0.580 Sum_probs=29.7
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
....|+-|-..+...+.+... -+..||.+|+. |-.|+..|...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~--------C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCFV--------CAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTCC--------CTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccCe--------ECCCCCCCCCC
Confidence 346899999998765554332 57789987753 66777666543
No 160
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=53.78 E-value=12 Score=27.97 Aligned_cols=45 Identities=29% Similarity=0.673 Sum_probs=32.3
Q ss_pred CCCCcCccccCcccCCCceeecC--CCCccccHhhHHHHHhcC----------CCCccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILP--KCNHGFHVRCIDKWLRSN----------SSCPKCRH 155 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~ 155 (203)
+.+..|.||-+- ..+.... .|...|+..||+.++... =+|=+|.-
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 456789999753 4555655 589999999999987431 14877754
No 161
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=52.52 E-value=18 Score=25.20 Aligned_cols=31 Identities=23% Similarity=0.525 Sum_probs=19.8
Q ss_pred ecCCCCccccHhhHH------HHHhc-----CCCCccccccc
Q 042698 127 ILPKCNHGFHVRCID------KWLRS-----NSSCPKCRHCL 157 (203)
Q Consensus 127 ~l~~C~H~FH~~Ci~------~Wl~~-----~~~CP~CR~~l 157 (203)
.+..|++.||..|+. .-+.. ...||.|...-
T Consensus 4 ~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 4 QCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred ccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 344599999999962 11222 35699996543
No 162
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=49.95 E-value=15 Score=21.42 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 042698 51 SLGLHFLIRCI 61 (203)
Q Consensus 51 ~l~~~~~~~~~ 61 (203)
++.+.+++|..
T Consensus 27 ~~~~~~~~RRR 37 (44)
T 2l2t_A 27 GLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhhh
Confidence 33333444443
No 163
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=49.90 E-value=11 Score=27.96 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCCcCccccCcccCCC-ceeecCCCCccccHhhHHHHHhcCC--CCccccc
Q 042698 108 LDNECVICLSDFAPGE-RVRILPKCNHGFHVRCIDKWLRSNS--SCPKCRH 155 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~-~v~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~ 155 (203)
.+..|++|...|.--. .-..+..|+|.++..|=. |..... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 4678999999874221 223444599999999983 443333 2777754
No 164
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.41 E-value=7.4 Score=24.18 Aligned_cols=40 Identities=23% Similarity=0.553 Sum_probs=27.9
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
..|+.|-..+...+.+... -+..||.+|+. |-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~--------C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCFI--------CHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTTC--------CSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCCc--------ccccCCccCC
Confidence 5799999998876544333 56789987753 6677766654
No 165
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.01 E-value=14 Score=22.76 Aligned_cols=40 Identities=20% Similarity=0.536 Sum_probs=26.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
...|+.|-..+.. ..+.. -+..||.+|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 3579999888873 33332 5788898876 466777666543
No 166
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=47.80 E-value=38 Score=19.40 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042698 36 NAVIVLSVLVCGIICSLGLHFLIRCI 61 (203)
Q Consensus 36 ~~iiii~il~~~~i~~l~~~~~~~~~ 61 (203)
...++++++..++++-+++.++++++
T Consensus 9 ~~~Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 9 ILVVLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454444443434444444443
No 167
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=47.77 E-value=19 Score=22.84 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=24.6
Q ss_pred CCCcCccccCcccCCCceeecCCC-CccccHhhHHHH
Q 042698 108 LDNECVICLSDFAPGERVRILPKC-NHGFHVRCIDKW 143 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C-~H~FH~~Ci~~W 143 (203)
+..-|.||.++ ..++-+. | +-+|+..|+.+-
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 34579999877 4577777 9 899999998874
No 168
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=47.30 E-value=15 Score=31.48 Aligned_cols=46 Identities=28% Similarity=0.622 Sum_probs=32.8
Q ss_pred CCCCcCccccCcccCCCceeecC--CCCccccHhhHHHHHhc----------CCCCcccccc
Q 042698 107 GLDNECVICLSDFAPGERVRILP--KCNHGFHVRCIDKWLRS----------NSSCPKCRHC 156 (203)
Q Consensus 107 ~~~~~CaICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~~ 156 (203)
+.+..|.+|-+. ..+..+. .|...|+..||+.++.. +=+|=+|.-.
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 456789999754 3455555 69999999999999831 2258888643
No 169
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=47.26 E-value=10 Score=28.02 Aligned_cols=39 Identities=26% Similarity=0.680 Sum_probs=24.4
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|+.|-..+...+.+... -++.||.+|+ .|-.|+..|.
T Consensus 66 ~~C~~C~~~I~~~~~v~~a--~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRRA--QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCCcEEEEc--CCceEeeCCC--------cCCCCCCCCC
Confidence 4577777776655444322 5678888775 4666666554
No 170
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=45.82 E-value=9.2 Score=24.10 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=28.5
Q ss_pred CCcCccccCcccCCCceeecC--CCCccccHhhHHHHH---h-----cCCCCccccc
Q 042698 109 DNECVICLSDFAPGERVRILP--KCNHGFHVRCIDKWL---R-----SNSSCPKCRH 155 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~Wl---~-----~~~~CP~CR~ 155 (203)
...| ||......+ .++... .|...||..|+.--- . .+-.||.||.
T Consensus 10 ~v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3458 797665444 455553 399999999984311 1 1345999975
No 171
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.46 E-value=8.3 Score=23.92 Aligned_cols=40 Identities=25% Similarity=0.556 Sum_probs=27.6
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
..|+.|-..+...+.+... -+..||.+|+ .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEY--GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEECS--TTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEEE--CccccCcccC--------eECCCCCcCCC
Confidence 5799999998865444332 5788998775 36677766654
No 172
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=45.37 E-value=43 Score=21.64 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 042698 56 FLIRCIL 62 (203)
Q Consensus 56 ~~~~~~~ 62 (203)
+.++|+.
T Consensus 32 ~gcwcyl 38 (90)
T 1zza_A 32 LGCWCYL 38 (90)
T ss_dssp HHHHTTT
T ss_pred HHHHHHH
Confidence 3333333
No 173
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.69 E-value=14 Score=23.86 Aligned_cols=42 Identities=26% Similarity=0.561 Sum_probs=29.6
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
....|+.|-..+...+.+.. -+..||.+|+. |-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF~--------C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSCFR--------CHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTTCB--------CSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCcCE--------EcCCCCCcCCC
Confidence 34679999999876655543 57889988853 66777666544
No 174
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=43.45 E-value=5 Score=34.33 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWL 144 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl 144 (203)
...|.+|...|..-..-..+..||++||..|-..++
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 357999999986432222334599999999997765
No 175
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.41 E-value=11 Score=23.45 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=26.2
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|+.|-..+...+.+... -+..||.+|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCC
Confidence 5799998888764433332 5678888775 3677777664
No 176
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.27 E-value=17 Score=23.28 Aligned_cols=40 Identities=23% Similarity=0.590 Sum_probs=28.9
Q ss_pred CCCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 108 LDNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
....|+-|-..+..++.+.. -+..||.+|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 34679999999887666554 4678998775 3677777664
No 177
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.10 E-value=17 Score=23.08 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=27.4
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
...|+-|-..+... .+. .-+..||.+|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~-~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVGV-FVK---LRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCSS-CEE---CSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccCc-EEE---ECcceeCcCcC--------eeCCCCCCCCC
Confidence 45799999988753 222 26789998886 47777777653
No 178
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=41.72 E-value=11 Score=26.04 Aligned_cols=11 Identities=36% Similarity=1.165 Sum_probs=10.4
Q ss_pred ccHhhHHHHHh
Q 042698 135 FHVRCIDKWLR 145 (203)
Q Consensus 135 FH~~Ci~~Wl~ 145 (203)
||.+|+..|++
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 179
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=41.66 E-value=5.7 Score=21.84 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=5.3
Q ss_pred Cccccccccc
Q 042698 150 CPKCRHCLIE 159 (203)
Q Consensus 150 CP~CR~~l~~ 159 (203)
||+|+..+..
T Consensus 8 CP~C~~~l~s 17 (34)
T 3mjh_B 8 CPQCMKSLGS 17 (34)
T ss_dssp CTTTCCEESS
T ss_pred CcHHHHHcCC
Confidence 5555555443
No 180
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.99 E-value=11 Score=25.90 Aligned_cols=11 Identities=45% Similarity=1.141 Sum_probs=10.4
Q ss_pred ccHhhHHHHHh
Q 042698 135 FHVRCIDKWLR 145 (203)
Q Consensus 135 FH~~Ci~~Wl~ 145 (203)
||..|+..|++
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 181
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.53 E-value=12 Score=23.92 Aligned_cols=41 Identities=17% Similarity=0.542 Sum_probs=28.8
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
...|+.|-..+..++.+... -+..||.+|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCC
Confidence 35799999998876654332 5778998776 36677766654
No 182
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=46.41 E-value=5.9 Score=22.42 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042698 40 VLSVLVCGIICSLGLHFL 57 (203)
Q Consensus 40 ii~il~~~~i~~l~~~~~ 57 (203)
+.+++..+++.++.++++
T Consensus 11 l~avlal~vi~iisLIiL 28 (39)
T 2l6w_A 11 ISAILALVVLTIISLIIL 28 (39)
Confidence 333333333333333333
No 183
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=39.66 E-value=10 Score=26.60 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=18.5
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHHH
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCIDK 142 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 142 (203)
.|+.|-..+...+.+... -+..||..|+.-
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~CF~C 39 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLECFKC 39 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTTCBC
T ss_pred cccCCCCeecCCceEEEE--CCcccccccCcc
Confidence 588887777654433222 467777777644
No 184
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=38.83 E-value=14 Score=27.72 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=21.2
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
-..|..|...+.... . .. =+..|+..|... +-...|..|...|..
T Consensus 87 CF~C~~C~~~L~~~~-f--~~-~g~~yC~~~y~~--~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 87 CLKCSDCHVPLAERC-F--SR-GESVYCKDDFFK--RFGTKCAACQLGIPP 131 (182)
T ss_dssp TTSCTTTCCCCSSCC-E--EE-TTEEECHHHHHH--TTSCCCTTTCCCCCS
T ss_pred cCccCCCCCccCCCc-e--eE-CCEeeecCcccc--ccccccccCCCccCC
Confidence 345666665554432 1 11 345555555443 223345556555543
No 185
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=37.92 E-value=9 Score=24.52 Aligned_cols=40 Identities=30% Similarity=0.524 Sum_probs=27.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
...|+.|-..+..++.+.. -+..||.+|+. |-.|+..|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF~--------C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCFL--------CMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSEE--------CSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccCc--------cCCCCCCCCC
Confidence 3579999999876665443 57888987754 6667666543
No 186
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.73 E-value=3.4 Score=25.72 Aligned_cols=36 Identities=19% Similarity=0.513 Sum_probs=24.3
Q ss_pred CcCccccCcccCCCceeecC--C--CCccccHhhHHHHHh
Q 042698 110 NECVICLSDFAPGERVRILP--K--CNHGFHVRCIDKWLR 145 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~--~--C~H~FH~~Ci~~Wl~ 145 (203)
..|+-|...++..+....+. . |++.|+..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 36888888887765443332 2 678888888877753
No 187
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.03 E-value=16 Score=23.03 Aligned_cols=39 Identities=26% Similarity=0.701 Sum_probs=27.0
Q ss_pred CcCccccCcccC--CCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAP--GERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~--~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|+.|-..+.. ++.+... -+..||.+|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCC
Confidence 579999999885 3333332 6788998886 3667776665
No 188
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=36.42 E-value=22 Score=24.93 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=28.0
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|+-|-..+.....+.. -+..||.+|+ .|-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYA---MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEE---TTEEEETTTS--------BCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEe---CCcEEccccc--------CcCcCCCccc
Confidence 579999998875433433 6788998874 4788888776
No 189
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=36.25 E-value=32 Score=19.38 Aligned_cols=10 Identities=10% Similarity=0.354 Sum_probs=5.6
Q ss_pred HHHHHHHHhh
Q 042698 56 FLIRCILVSW 65 (203)
Q Consensus 56 ~~~~~~~rr~ 65 (203)
+++.|.+|++
T Consensus 29 lffkciyrrf 38 (43)
T 2kih_A 29 LFFKSIYRFF 38 (43)
T ss_dssp HHCCCHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455666664
No 190
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=35.49 E-value=86 Score=20.00 Aligned_cols=27 Identities=15% Similarity=0.466 Sum_probs=14.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH
Q 042698 32 SLNSNAVIVLSVLVCGIICSLGLHFLI 58 (203)
Q Consensus 32 ~~~~~~iiii~il~~~~i~~l~~~~~~ 58 (203)
.++.-.+=+.++++.++++++.++++.
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVL 36 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHH
Confidence 344444555555555555555555444
No 191
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=35.44 E-value=22 Score=26.73 Aligned_cols=29 Identities=21% Similarity=0.495 Sum_probs=21.1
Q ss_pred cCccccCcccCCCceeecCCCCccccHhhHH
Q 042698 111 ECVICLSDFAPGERVRILPKCNHGFHVRCID 141 (203)
Q Consensus 111 ~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~ 141 (203)
.|+.|-..+...+.+... -++.||..|+.
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF~ 99 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCFT 99 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGCB
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCCe
Confidence 599998888765544332 67899998853
No 192
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.32 E-value=60 Score=21.10 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042698 38 VIVLSVLVCGIICSLGLHFLI 58 (203)
Q Consensus 38 iiii~il~~~~i~~l~~~~~~ 58 (203)
.++.++++++++++++.-++.
T Consensus 16 gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666665555554443
No 193
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=35.20 E-value=85 Score=19.82 Aligned_cols=28 Identities=11% Similarity=0.352 Sum_probs=16.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 042698 31 SSLNSNAVIVLSVLVCGIICSLGLHFLI 58 (203)
Q Consensus 31 ~~~~~~~iiii~il~~~~i~~l~~~~~~ 58 (203)
..++.-.+=+.+.++.++++++.++++.
T Consensus 10 F~YDY~tLRigGLifA~vLfi~GI~iil 37 (67)
T 2jp3_A 10 FYYDWESLQLGGLIFGGLLCIAGIALAL 37 (67)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHheecchhhHHHHHHHHHHHHH
Confidence 3445555666666666666666665554
No 194
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.98 E-value=14 Score=24.16 Aligned_cols=40 Identities=30% Similarity=0.644 Sum_probs=27.4
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
...|+-|-..+...+.+. . -+..||.+|+. |-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF~--------C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISCFR--------CSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTTCB--------CTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCCCe--------eCCCCCCCCC
Confidence 457999999988765543 2 67889988864 5556555543
No 195
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.84 E-value=25 Score=22.85 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=27.0
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
...|+.|-..+.. ..+. .-+..||.+|+. |-.|+..|..
T Consensus 25 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF~--------C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVK---ARDKYRHPECFV--------CADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCEE---SSSCEECTTTCC--------CSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEEE---ECCceECccCCE--------ecCCCCCCCC
Confidence 4579999998875 2222 267899988754 6677766654
No 196
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=34.08 E-value=10 Score=23.85 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=11.8
Q ss_pred CccccCcccCCCceeecCCCCccccHhhH
Q 042698 112 CVICLSDFAPGERVRILPKCNHGFHVRCI 140 (203)
Q Consensus 112 CaICl~~~~~~~~v~~l~~C~H~FH~~Ci 140 (203)
|+.|-..+..++.+.. -+..||.+|+
T Consensus 3 C~~C~~~I~~~~~v~a---~~~~~H~~CF 28 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS---LGKDWHRPCL 28 (76)
T ss_dssp CTTTSSBCCGGGEEEE---TTEEEETTTC
T ss_pred CCCCCCEEECceEEEE---CCccccCCCC
Confidence 5555555543333322 2455555443
No 197
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=33.78 E-value=8.8 Score=24.56 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=14.4
Q ss_pred HHHHhcCCCCcccccccccc
Q 042698 141 DKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 141 ~~Wl~~~~~CP~CR~~l~~~ 160 (203)
+.|+..--.||.|+..+...
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 45666677899999887743
No 198
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=33.04 E-value=44 Score=22.77 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=15.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHH
Q 042698 27 YSSESSLNSNAVIVLSVLVCGIICSL 52 (203)
Q Consensus 27 ~~s~~~~~~~~iiii~il~~~~i~~l 52 (203)
+...-.+++..++++.+++.+++++|
T Consensus 62 ds~GlKV~P~~VLv~sl~Fi~~Vi~L 87 (96)
T 2wwb_C 62 DSPGLKVGPVPVLVMSLLFIASVFML 87 (96)
T ss_dssp CSCCCCCSSCSHHHHHHHHHHHHHHH
T ss_pred CCCceEECCEEehhhHHHHHHHHHHH
Confidence 34456677777777766665554433
No 199
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=32.94 E-value=19 Score=23.89 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=20.4
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCI 140 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci 140 (203)
...|+.|-..+..++.++.. =+..||.+|+
T Consensus 66 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF 95 (101)
T 2cup_A 66 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF 95 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEES--SSCEEETTTC
T ss_pred CCccccCCCccccCCeEEEe--CCcchHHhCC
Confidence 35788888888766544443 5678887765
No 200
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=32.48 E-value=65 Score=17.65 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042698 37 AVIVLSVLVCGIICSLGLHFLI 58 (203)
Q Consensus 37 ~iiii~il~~~~i~~l~~~~~~ 58 (203)
|.+.+++-++++++.+.-.|++
T Consensus 8 malt~i~gl~vif~~lg~tfly 29 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGGTFLY 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCceeEE
Confidence 3344444444444444444443
No 201
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=32.37 E-value=12 Score=25.76 Aligned_cols=40 Identities=18% Similarity=0.391 Sum_probs=25.6
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|++|..++...........|+-- ++....||-|..+|.
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~---------f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF---------IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE---------EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCCEEECccccch---------hhccccCcchhhHHH
Confidence 5799999887654333333334432 345667999988775
No 202
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=31.29 E-value=65 Score=21.36 Aligned_cols=52 Identities=10% Similarity=-0.025 Sum_probs=26.3
Q ss_pred ecCCCCccccHhhHHHHHhcCCCCccccc--cc--ccccccc-cCCCCCCCCCCCCCCccccccc
Q 042698 127 ILPKCNHGFHVRCIDKWLRSNSSCPKCRH--CL--IESCKKI-EGSTQPSSLSGISTPVQETVVN 186 (203)
Q Consensus 127 ~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~--~l--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 186 (203)
.++ |+..|++.|-.- |.+|=. -| ....++- .....+++..+++.++..+.++
T Consensus 19 ~T~-C~~CyCKkCc~H-------Cq~CF~~KGLGIsYgRkkRr~RRr~p~~~~~hq~~~~kqp~s 75 (86)
T 1tac_A 19 KTA-SNRAHAKKSAYH-------SQVAFITKGLGISYGRKKRRQRRRPSQGGQTHQDPIPKQPSS 75 (86)
T ss_dssp TTC-SSCSSTTTTTTT-------CCCSCSSTTSSSSSCCCSGGGSCTTCCSSCCCSSSSTTCCSS
T ss_pred CCC-CCCceecchhhh-------hhHHHccCCCceEeccccccccCCCCCCCCCCcCcCCCCCCC
Confidence 444 888888776543 777721 11 1111111 1223455556666666665444
No 203
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=30.47 E-value=20 Score=23.73 Aligned_cols=40 Identities=20% Similarity=0.517 Sum_probs=23.9
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|+.|-.++..+........|+-- +.....||-|.+++.
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~---------~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKD---------FSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCE---------EEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCCceECcccccc---------CCCcccCcchhhHHH
Confidence 4688888887665554444445432 233446888877664
No 204
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=30.03 E-value=8.7 Score=24.47 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=15.0
Q ss_pred HHHHhcCCCCcccccccccc
Q 042698 141 DKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 141 ~~Wl~~~~~CP~CR~~l~~~ 160 (203)
+.|+..--.||.|+..+...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 45666777899999987654
No 205
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=29.50 E-value=15 Score=27.08 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=16.3
Q ss_pred ecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 127 ILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 127 ~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
.+..|||.|-.. .....||.|-..+.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 344588888643 22346999987653
No 206
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.36 E-value=15 Score=19.16 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=8.0
Q ss_pred CCCccccccccc
Q 042698 148 SSCPKCRHCLIE 159 (203)
Q Consensus 148 ~~CP~CR~~l~~ 159 (203)
..||+|+...+.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 358888776554
No 207
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=28.29 E-value=54 Score=19.72 Aligned_cols=28 Identities=21% Similarity=0.090 Sum_probs=18.4
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 042698 26 PYSSESSLNSNAVIVLSVLVCGIICSLG 53 (203)
Q Consensus 26 ~~~s~~~~~~~~iiii~il~~~~i~~l~ 53 (203)
.+...-..++..++++++.+.++++++-
T Consensus 21 ee~~giKi~P~~Vl~~si~~i~~V~~L~ 48 (53)
T 1rh5_C 21 ETFSKIRVKPEHVIGVTVAFVIIEAILT 48 (53)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccccCCeehhhhHHHHHHHHHHHH
Confidence 3344677888888777777766655443
No 208
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.26 E-value=32 Score=21.77 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=27.3
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 160 (203)
...|+-|-..+. +..+. .-+..||.+|+ .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCCC--------EeCCCCCccCCC
Confidence 467999999887 33332 26788998775 477787776643
No 209
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=27.63 E-value=22 Score=21.62 Aligned_cols=26 Identities=15% Similarity=0.425 Sum_probs=14.4
Q ss_pred CcCccccCcccCCCceeecC--CCCccc
Q 042698 110 NECVICLSDFAPGERVRILP--KCNHGF 135 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~--~C~H~F 135 (203)
-.|++|..++.-.+..-+.+ .|++.|
T Consensus 11 L~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 46999988755433222333 355554
No 210
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.04 E-value=24 Score=22.35 Aligned_cols=40 Identities=25% Similarity=0.604 Sum_probs=26.8
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
..|+.|-..+..++.+... -+..||.+|+. |-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~--------C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFY--EDRHFHEGCFR--------CCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCC--SSCCCBTTTSB--------CTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEEe--CCccccccCCe--------ecCCCCccCC
Confidence 5799999998844433322 47888987753 6677766653
No 211
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=26.93 E-value=33 Score=25.66 Aligned_cols=24 Identities=29% Similarity=0.514 Sum_probs=15.0
Q ss_pred eeecCCCCccccHhhHHHHHhcCCCCccccc
Q 042698 125 VRILPKCNHGFHVRCIDKWLRSNSSCPKCRH 155 (203)
Q Consensus 125 v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 155 (203)
.-+++.|||++-. .....||+|..
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~ 161 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGA 161 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCC
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCC
Confidence 3345569988752 22337999964
No 212
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=26.36 E-value=43 Score=20.17 Aligned_cols=39 Identities=28% Similarity=0.661 Sum_probs=26.6
Q ss_pred CcCccccCcccCCCceeecCCCCcccc--HhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFH--VRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH--~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|+-|-..+..++..... -+..|| .+|+ .|-.|+..|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCCE--------ECCCCCCcCC
Confidence 4699999888864333332 578899 8775 4677777664
No 213
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=25.27 E-value=91 Score=17.40 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=10.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHH
Q 042698 33 LNSNAVIVLSVLVCGIICSLGLH 55 (203)
Q Consensus 33 ~~~~~iiii~il~~~~i~~l~~~ 55 (203)
.++.++=++++++-++.+++++.
T Consensus 10 LPsI~VPlVglvfPai~Mallf~ 32 (38)
T 1jb0_I 10 LPWIFIPVVCWLMPTVVMGLLFL 32 (38)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CChhhHhHHHHHHHHHHHHHHHH
Confidence 33444445555555555444443
No 214
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=25.09 E-value=27 Score=21.76 Aligned_cols=40 Identities=25% Similarity=0.566 Sum_probs=27.8
Q ss_pred CcCccccCcccC---CCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 110 NECVICLSDFAP---GERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 110 ~~CaICl~~~~~---~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
..|+-|-..+.. .+.+... =+..||.+|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTC--------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCcccC--------EehhcCCCCCC
Confidence 579999999885 3333332 5788998775 47788877753
No 215
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=24.92 E-value=6.6 Score=26.00 Aligned_cols=23 Identities=30% Similarity=0.820 Sum_probs=17.6
Q ss_pred eecCCCCccccHhhHHHHHhcCC
Q 042698 126 RILPKCNHGFHVRCIDKWLRSNS 148 (203)
Q Consensus 126 ~~l~~C~H~FH~~Ci~~Wl~~~~ 148 (203)
...+.|++.|+..|-..|=..|.
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H~ 66 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQHR 66 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTTT
T ss_pred eEeCCCCCccccccCCchhhcCC
Confidence 45666999999999999844444
No 216
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.61 E-value=23 Score=27.01 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=13.5
Q ss_pred cCCCCccccHhhHHHHHhcCCCCcccccc
Q 042698 128 LPKCNHGFHVRCIDKWLRSNSSCPKCRHC 156 (203)
Q Consensus 128 l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 156 (203)
++.|||+|-.+ .....||+|..+
T Consensus 158 C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 158 CRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp ETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred ECCCCCEeeCC------CCCCCCCCCcCC
Confidence 34488875421 122379999764
No 217
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=23.54 E-value=21 Score=24.65 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=26.3
Q ss_pred CccccCcccCCCceeecCCCCccccHhhHHHHHh----cC----CCCccccc
Q 042698 112 CVICLSDFAPGERVRILPKCNHGFHVRCIDKWLR----SN----SSCPKCRH 155 (203)
Q Consensus 112 CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~----~~----~~CP~CR~ 155 (203)
|..|......++.+.....|...||..|+..... .. -.||.|+.
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 4444444444445666667999999999875321 11 23999964
No 218
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.41 E-value=5.9 Score=25.94 Aligned_cols=14 Identities=21% Similarity=0.740 Sum_probs=12.9
Q ss_pred CCCccccHhhHHHH
Q 042698 130 KCNHGFHVRCIDKW 143 (203)
Q Consensus 130 ~C~H~FH~~Ci~~W 143 (203)
.|+|.|+..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999998
No 219
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.25 E-value=32 Score=21.71 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=25.4
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|+.|-..+.. ..+.. -+..||.+|+. |-.|+..|.
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~wH~~CF~--------C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVSA---LGKTYHPDCFV--------CAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCS-CCEEE---TTEEECTTTSS--------CSSSCCCCC
T ss_pred CcCccccCEecc-ceEEE---CCceeCccCCc--------cccCCCCCC
Confidence 479999998873 33332 67889987764 566666654
No 220
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.67 E-value=74 Score=21.84 Aligned_cols=50 Identities=8% Similarity=0.024 Sum_probs=31.2
Q ss_pred CcCccccCcccC-CCceeecCCCCccccHhhHHHHHhcCCCCccccccccccc
Q 042698 110 NECVICLSDFAP-GERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIESC 161 (203)
Q Consensus 110 ~~CaICl~~~~~-~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 161 (203)
..|..|-..+.+ +.... .. =+..|+..|...-+..+..|-.|...|....
T Consensus 33 F~C~~C~~~L~~~~~~~~-~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-TK-SGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-EE-TTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeEE-EE-CCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 357777766642 11121 12 4677888888776555557999988887643
No 221
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=22.10 E-value=1e+02 Score=19.05 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=28.6
Q ss_pred CCcCccccCcccCCCceeecCCCCccccH-hhHHHH
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHV-RCIDKW 143 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~-~Ci~~W 143 (203)
...|+-|-.++..+.....-...-|.|+. .||..+
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 46899999999998866666568899997 599886
No 222
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=21.89 E-value=9 Score=24.45 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=12.9
Q ss_pred HHhcCCCCcccccccccc
Q 042698 143 WLRSNSSCPKCRHCLIES 160 (203)
Q Consensus 143 Wl~~~~~CP~CR~~l~~~ 160 (203)
|+..--.||.|+..+...
T Consensus 4 ~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp SSSCCCBCSSSCCBCEEE
T ss_pred HHhhheECCCCCCcCeEe
Confidence 455556799999877654
No 223
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.78 E-value=46 Score=25.56 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=15.4
Q ss_pred eeecCCCCccccHhhHHHHHhcCCCCcccccc
Q 042698 125 VRILPKCNHGFHVRCIDKWLRSNSSCPKCRHC 156 (203)
Q Consensus 125 v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 156 (203)
.-+++.|||++-. .....||+|...
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 3445559998642 122479999753
No 224
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.68 E-value=7.2 Score=32.42 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=28.3
Q ss_pred CCCcCccccCcccCCCceee---cCCCCccccHhhHHHHHhcCCCCcccccc
Q 042698 108 LDNECVICLSDFAPGERVRI---LPKCNHGFHVRCIDKWLRSNSSCPKCRHC 156 (203)
Q Consensus 108 ~~~~CaICl~~~~~~~~v~~---l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 156 (203)
....|++|-..-... .++. ..+=.+.+|.-|-..|--....||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 346899998774332 1111 01112455556666786677789999664
No 225
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=21.53 E-value=68 Score=21.97 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=12.0
Q ss_pred CccccHhhHHHHHhcCCCCcccccccc
Q 042698 132 NHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 132 ~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
+..|+..|... +....|..|...|.
T Consensus 50 g~~yC~~cy~~--~~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 50 DKPVCKPCYVK--NHAVVCQGCHNAID 74 (126)
T ss_dssp TEEEEHHHHHH--HSCCBCTTTCSBCC
T ss_pred CEEechHHhCc--CcCccCcccCCcCC
Confidence 44555555443 22334555555555
No 226
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.65 E-value=45 Score=20.21 Aligned_cols=37 Identities=22% Similarity=0.595 Sum_probs=25.9
Q ss_pred CcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCcccccccc
Q 042698 110 NECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLI 158 (203)
Q Consensus 110 ~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 158 (203)
..|+-|-..+.. +.+.. -+..||.+|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCC
Confidence 579999888864 33433 5688998775 3677877765
No 227
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.34 E-value=36 Score=22.04 Aligned_cols=39 Identities=15% Similarity=0.413 Sum_probs=26.8
Q ss_pred CCcCccccCcccCCCceeecCCCCccccHhhHHHHHhcCCCCccccccccc
Q 042698 109 DNECVICLSDFAPGERVRILPKCNHGFHVRCIDKWLRSNSSCPKCRHCLIE 159 (203)
Q Consensus 109 ~~~CaICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 159 (203)
...|+.|-..+. ++.+.. -+..||.+|+ .|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLVA---LGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEEE---TTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEEE---CCccccccCC--------ccCCCCCCCCC
Confidence 457999999885 333332 6789998776 46777776654
Done!