Query 042701
Match_columns 1075
No_of_seqs 184 out of 227
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05664 DUF810: Protein of un 100.0 3E-188 7E-193 1666.4 55.9 639 195-841 1-677 (677)
2 KOG1011 Neurotransmitter relea 100.0 1.8E-70 3.8E-75 620.1 28.8 549 404-1031 432-1097(1283)
3 KOG1328 Synaptic vesicle prote 99.9 1.1E-18 2.4E-23 203.3 39.1 492 452-1026 365-918 (1103)
4 PF10540 Membr_traf_MHD: Munc1 99.8 3.6E-21 7.8E-26 192.0 10.4 111 916-1026 1-137 (137)
5 PF06046 Sec6: Exocyst complex 98.7 5.2E-07 1.1E-11 109.1 20.3 379 608-1057 138-531 (566)
6 KOG2180 Late Golgi protein sor 97.7 0.0026 5.7E-08 77.3 20.4 392 595-1030 277-704 (793)
7 PF06292 DUF1041: Domain of Un 97.5 0.00011 2.3E-09 71.2 4.0 59 569-630 45-105 (106)
8 KOG3543 Ca2+-dependent activat 96.8 0.092 2E-06 63.2 19.6 150 578-744 805-954 (1218)
9 PF04091 Sec15: Exocyst comple 96.1 0.053 1.2E-06 61.9 12.3 252 715-1018 27-280 (311)
10 PF04437 RINT1_TIP1: RINT-1 / 95.9 0.076 1.7E-06 64.1 13.3 297 682-1021 131-451 (494)
11 KOG2286 Exocyst complex subuni 95.7 8.7 0.00019 48.4 29.5 348 618-1057 273-634 (667)
12 COG5173 SEC6 Exocyst complex s 94.6 14 0.00031 45.2 25.6 311 682-1061 374-705 (742)
13 PF04100 Vps53_N: Vps53-like, 69.0 26 0.00056 41.6 10.0 112 596-709 263-383 (383)
14 KOG1924 RhoA GTPase effector D 66.8 5.6 0.00012 50.1 4.0 24 869-892 1069-1092(1102)
15 KOG1924 RhoA GTPase effector D 61.9 8.4 0.00018 48.6 4.2 25 14-38 421-445 (1102)
16 PF14923 CCDC142: Coiled-coil 58.6 26 0.00057 42.4 7.5 111 908-1028 275-390 (450)
17 PRK09752 adhesin; Provisional 57.5 12 0.00027 49.4 4.9 10 89-98 908-917 (1250)
18 KOG2307 Low density lipoprotei 49.2 4.1E+02 0.009 33.4 15.1 126 715-848 350-506 (705)
19 PF10474 DUF2451: Protein of u 47.6 1.1E+02 0.0023 34.1 9.6 160 819-1004 4-184 (234)
20 PF08385 DHC_N1: Dynein heavy 44.6 1.9E+02 0.0042 35.4 12.1 168 574-767 354-539 (579)
21 PRK09752 adhesin; Provisional 43.3 30 0.00066 46.1 5.1 12 38-49 862-873 (1250)
22 PHA01732 proline-rich protein 42.0 32 0.00069 32.7 3.7 25 102-126 5-29 (94)
23 PF15080 DUF4547: Domain of un 41.9 26 0.00056 36.9 3.4 80 916-1013 70-152 (196)
24 PF12854 PPR_1: PPR repeat 41.1 31 0.00066 26.7 3.0 34 404-441 1-34 (34)
25 PF07462 MSP1_C: Merozoite sur 38.7 74 0.0016 39.3 7.0 22 256-277 381-411 (574)
26 PF12290 DUF3802: Protein of u 38.5 2.2E+02 0.0047 28.6 8.9 79 911-991 27-109 (113)
27 PRK15319 AIDA autotransporter- 36.9 39 0.00085 46.9 4.8 14 37-50 1615-1628(2039)
28 COG0648 Nfo Endonuclease IV [D 35.3 26 0.00056 40.0 2.5 75 331-409 103-187 (280)
29 KOG0433 Isoleucyl-tRNA synthet 35.1 1.5E+02 0.0032 38.3 8.8 99 822-952 691-794 (937)
30 PF09201 SRX: SRX; InterPro: 29.5 23 0.00051 36.4 0.8 25 429-453 91-115 (148)
31 PF07393 Sec10: Exocyst comple 29.4 1.3E+03 0.029 29.6 31.3 124 917-1057 578-701 (710)
32 KOG0412 Golgi transport comple 24.2 6.6E+02 0.014 32.5 11.7 205 822-1057 544-770 (773)
33 PF08623 TIP120: TATA-binding 23.3 5.8E+02 0.013 27.3 9.8 71 282-354 93-163 (169)
34 COG5178 PRP8 U5 snRNP spliceos 22.3 71 0.0015 42.5 3.2 27 515-546 574-600 (2365)
35 COG3827 Uncharacterized protei 21.5 60 0.0013 35.7 2.1 35 913-947 192-227 (231)
36 PRK05094 dsDNA-mimic protein; 20.5 71 0.0015 31.6 2.2 21 194-214 5-25 (107)
No 1
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=100.00 E-value=3.2e-188 Score=1666.43 Aligned_cols=639 Identities=46% Similarity=0.736 Sum_probs=605.9
Q ss_pred CCChhHHHHHHHHHHHHHhhccCCccccccchhhhhhhHHHHhhcCCCCC----CCcccCCCCCCcccHHHHHHHhhhhh
Q 042701 195 GITDDDLRETAYEVLLACAGAAGGLIVPSKEKRKDKKSRLMKKLGRSKND----NVVNQSQRAPGLVGLLETMRVQMEIS 270 (1075)
Q Consensus 195 ~ls~ddlRetAYEi~~a~~~~sg~~~~~~~~~~~~~~s~~k~~lg~~~~~----~~~~~~~~~~~~~~~~e~mR~qm~vs 270 (1075)
||||||||||||||||||||+||+.+++..++++++ ||+|++||+|+++ .++|+++|+| +|++|+||+||+||
T Consensus 1 ~ls~~dlRetAYEi~~a~~~~s~~~~~~~~~~~~~~-s~~k~~lgl~~~~~~~~~~~~~~~~~~--~~~~e~~r~qm~vs 77 (677)
T PF05664_consen 1 GLSDDDLRETAYEILLASCRSSGGLIYFSQSKKKEK-SRVKKALGLKSSKSGSSVSSPGRPRRP--MTSAEIMRVQMRVS 77 (677)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCCccCccccccch-hHHHHHhcCCCCCCCCCCCCCCCCCCc--chHHHHHHHHhccc
Confidence 799999999999999999999988888765544433 9999999998776 4467777787 99999999999999
Q ss_pred hhhhHHHHHHHHHHhhhhhccccccccccHhhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhcCCccccCCCChhhHHH
Q 042701 271 EAMDIRTRQGLLNALTGKVGKRMDTLLIPLELLCCISRTEFSDKNTSLVENWMVLNMLEEGLINHPVVGFGESGRRVNEL 350 (1075)
Q Consensus 271 e~~d~r~R~~l~~~~~gq~g~r~~~~~lpLeLL~~~~~sdF~d~~ey~~Wq~rql~~LE~gLl~hp~~~~~~~~~~~~~l 350 (1075)
||+|+||||+|||+++||+|||+|+++|||||||++|+|||+|++||++|||||||+||||||+||++|+|++|.+|++|
T Consensus 78 e~~d~r~r~~l~~~~~~~~g~r~e~~~lpLeLl~~~~~sdF~d~~ey~~WqkRql~~Le~gL~~hp~~~l~~s~~~a~~l 157 (677)
T PF05664_consen 78 EQMDARIRRALLRAAAGQVGRRAESIVLPLELLQQLKPSDFSDEKEYEQWQKRQLKVLEAGLLNHPSVPLDKSNASAQRL 157 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhCCHhhCCCHHHHHHHHHHHHHHHHHHHHhCcCCCccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCccccchhHHHHHHHHHHhhhhcCCCCCCCCCCcccccCCCcccHHHHHHHHhhhccccCCccch
Q 042701 351 SILLAKIEESESLPSSTGELQRTECLRSLREIAIPLAERPARGDLTGEVCHWADGYHLNVRLYEKLLLSVFDVLDEGKLT 430 (1075)
Q Consensus 351 r~~~~~~~~~~~~~~~~~~~~~~e~m~~l~~~~~~La~r~~~~~~~~e~chWadgyplNv~LY~~LL~~~FD~~de~~v~ 430 (1075)
|++|++|++.+.++..++.++|+|+||+||++|++|||||++++.++|+||||||||||+||||+||++|||++|||+|+
T Consensus 158 r~~~~~~~~~~~~~~~~~~~~~se~~~~l~~~~~~La~r~~~~~~~~e~chWadgyplN~~LYe~LL~~~FD~~de~~vi 237 (677)
T PF05664_consen 158 RQIIAKIREDEAEDKPIDTGKNSESMRALRSAVISLAWRPSRDGSSGETCHWADGYPLNVRLYEKLLFSVFDILDEGQVI 237 (677)
T ss_pred HHHHHhcccccccCCcCccccccHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccHHHHHHHHHHHhcccccchHH
Confidence 99999888877755544445559999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccccchhHHHHHHHHHhhhhhhccCchhHHHHHHHHhhhccccccCCccchhhhhhhhhhhhhcC
Q 042701 431 EEVEEILELLKSTWRVLGITETMHYTCYALVLFRQYVITSEQGMLQHAIDQLKKIPLKEQRGPQERLHLKSLLSKVEVEG 510 (1075)
Q Consensus 431 eEvdElleliK~TW~~LGI~q~~Hn~cf~WvLF~qyv~Tge~~Ll~~a~~~l~~v~~~~~~~~~~~~y~k~l~~~~~~~~ 510 (1075)
|||||+||+||+||++||||||+||+|||||||||||+|||++||+||++||++|++|+++.++|++|+|+|+|+.
T Consensus 238 dE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ev~~d~~~~~~~~~y~~sl~~~~---- 313 (677)
T PF05664_consen 238 DEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQEVAKDAKRATKDPLYLKSLRCSV---- 313 (677)
T ss_pred hhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccchhhhhhhhccc----
Confidence 9999999999999999999999999999999999999999999999999999999999998899999999999998
Q ss_pred CCcchHHHHHHHHhHHHHHHHhhhhhhhhccCCcc-hhhHHHHHHHHHHHHhccCcccc---------------ccc---
Q 042701 511 GSQSFSFLRSFLLPIQKWADKQLGDYHLHFAECPV-MMENVVSVAMLARRLLLEEPEMV---------------VDK--- 571 (1075)
Q Consensus 511 ~~~~~~lL~s~L~si~~W~ekrL~dYH~~F~~~~~-~me~l~sl~~~~~kil~ed~~~~---------------yi~--- 571 (1075)
++.++++|+|+|++|++|++|||+|||+||++|+. .||++++|++.++||++||+++. ||+
T Consensus 314 ~~~~l~ll~s~L~si~~W~ekrL~dYH~~f~~~~~~~me~llsl~~~a~~il~ed~~~~~~~~~~~~~~~~ie~YIrsSi 393 (677)
T PF05664_consen 314 ETSDLSLLSSVLSSIQGWAEKRLLDYHDHFSEGNIGVMEGLLSLAVSAAKILGEDVSREYRRKRSKVARSRIESYIRSSI 393 (677)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhhchhHHHHhhhccchHHHHHHHHHHHH
Confidence 77899999999999999999999999999999998 59999999999999999987521 777
Q ss_pred ---------------CCCCchHHHHHHHHHHHHHHhhcccCcccccccCCchhHHHHHHHHHHHHhhHHHHHHhhhccCh
Q 042701 572 ---------------SEIHEHPLALLAEETKKLLKRDSSIFMPILSKRHPQATIVSASLLHKLYGNKLKPFSDGAEHLTE 636 (1075)
Q Consensus 572 ---------------~~~~~~~L~~LA~di~~La~~Ek~~fSPiL~~whp~a~~VAA~tLh~~yg~dLK~~L~~v~~lt~ 636 (1075)
+.++.|+|++||+||++||++|+++|||+|++|||+|++|||++||+|||++||+||+++++||+
T Consensus 394 ~~Af~~~~~~~~~~~~~~~~~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~LH~~Yg~~Lk~~L~~~~~LT~ 473 (677)
T PF05664_consen 394 KAAFARMASSVDSRSDSEPSHVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAATLHSCYGNELKQFLSGVTHLTP 473 (677)
T ss_pred HHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHHHHHHHHHHHHHHHcccccCCH
Confidence 24888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCchhHHHHHHHHHhhhhcccchhhhhhccCCCccchhhHHHHHHHHHHHhhhhHHHHHHHHHhcCccccCCCCC
Q 042701 637 DVASVFPAADSLEQYIISLITSTCEEETAAVYCRKLMPYQIESISGTLVLRWINSQLGRILSWVERAIQQERWDPISPQQ 716 (1075)
Q Consensus 637 d~~~vl~aAD~LEk~L~ql~~sv~~~dg~k~~vr~~~PfelE~~f~~~V~~Wi~e~~~k~~ewV~rAie~E~WeP~S~~e 716 (1075)
++++||++||+|||+|+||. ++++|||||+++++|+||++|+++.+||++||+++.+++.+||+||+++|+|+|.++++
T Consensus 474 d~v~VL~aA~~LEk~Lvq~~-~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~P~S~~e 552 (677)
T PF05664_consen 474 DVVEVLQAADKLEKALVQMV-SVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQLERLNEWVDRAIKQEKWNPRSKEE 552 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhccccccccccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCC
Confidence 99999999999999999998 77889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhhhhhhhhhhhH
Q 042701 717 RHASSIVEVYRIVEETVDQFFALQVPMRSTELNALFRGIDNAFQVYANHVTDKLGSKEDLVPPEPVLTRYRKEAGIKAFV 796 (1075)
Q Consensus 717 ~hSsSVVDIFrii~Etld~ff~L~wp~~~~lat~L~kgI~~~lq~Y~~~V~~~~g~ke~~iP~~P~LTR~~kes~~~~~~ 796 (1075)
+||+|||||||||+||+|+||+|+||++..++++|++||+++|++||++|+++||++++|+|++|+||||+++++|+++|
T Consensus 553 ~hs~SvVEvfri~~eTvd~ff~L~~~~~~~~l~~L~~gld~~lq~Y~~~v~~~~gsk~~liP~~P~LTR~~~~sk~~~~~ 632 (677)
T PF05664_consen 553 RHSPSVVEVFRIFNETVDQFFQLPWPMHADFLQALSKGLDKALQRYCEKVEQSCGSKQSLIPPLPPLTRCKKDSKFKKLW 632 (677)
T ss_pred CCcchHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCcchhhccccccccccccchhhhccHHHHHHHHHHHHH
Q 042701 797 KKEILDPRMSEERRSSEINILTTAALCVQLNTLHYAISQLNKLED 841 (1075)
Q Consensus 797 KKa~~e~~~p~e~~~~~~~~~f~p~lCVrLNNLeyi~~qLd~LEk 841 (1075)
||+..++..+.++...+.+++|+|++|||||||||+++||++|||
T Consensus 633 Kk~~~~~~~~~~~~~~~~~~~~~~~lcVrLNtL~yil~qL~~LEK 677 (677)
T PF05664_consen 633 KKKWKSSTNPDERFSSKINSQFTPRLCVRLNTLEYILSQLDKLEK 677 (677)
T ss_pred HHHhcCccccccccccCcccCccCceeeeecHHHHHHHHHHhhcC
Confidence 999877776776666666789999999999999999999999986
No 2
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-70 Score=620.11 Aligned_cols=549 Identities=16% Similarity=0.256 Sum_probs=462.2
Q ss_pred CCCccc-HHHHHHHHhhhccccCCcc--------------chHHHHHHHHHHhhhccccccch-hHHHHHHHHHhhhhhh
Q 042701 404 DGYHLN-VRLYEKLLLSVFDVLDEGK--------------LTEEVEEILELLKSTWRVLGITE-TMHYTCYALVLFRQYV 467 (1075)
Q Consensus 404 dgyplN-v~LY~~LL~~~FD~~de~~--------------v~eEvdElleliK~TW~~LGI~q-~~Hn~cf~WvLF~qyv 467 (1075)
..||+. -.|.|-|..+.-|. +++ +-|-+.||.+-.---++|..|+| |.|++| |..+|+
T Consensus 432 apyhvqytclhenlfh~~~~~--~~vkip~argddawkv~fdetaqeivdefamrygiesiyqamthfac----l~skym 505 (1283)
T KOG1011|consen 432 APYHVQYTCLHENLFHAHTDD--GEVKIPKARGDDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTHFAC----LSSKYM 505 (1283)
T ss_pred ccceeeehhHhhhhHHhhhcc--cceeCCccCCCccceehhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH----Hhhccc
Confidence 567765 34555555554443 221 34567899998888999999999 999999 999999
Q ss_pred ccCchhHHHHHHHHhhhccccccCCccchhhhhhhhhhhhhcCCCcchHHHHHHHHhHHHHHHHhhhhhhhhccCCcch-
Q 042701 468 ITSEQGMLQHAIDQLKKIPLKEQRGPQERLHLKSLLSKVEVEGGSQSFSFLRSFLLPIQKWADKQLGDYHLHFAECPVM- 546 (1075)
Q Consensus 468 ~Tge~~Ll~~a~~~l~~v~~~~~~~~~~~~y~k~l~~~~~~~~~~~~~~lL~s~L~si~~W~ekrL~dYH~~F~~~~~~- 546 (1075)
+.|-|.+|+..+++|+.++++..+.+. .+.+.|++++|+|++++++||++.++|+ +..|+.|+++|+.++..
T Consensus 506 cpgvpavmstllaninayyahttastn---vsasdrfaasnfgkerfvklldqlhnsl----ridls~yrnnfpassper 578 (1283)
T KOG1011|consen 506 CPGVPAVMSTLLANINAYYAHTTASTN---VSASDRFAASNFGKERFVKLLDQLHNSL----RIDLSAYRNNFPASSPER 578 (1283)
T ss_pred CCCcHHHHHHHHHhhhHHhhccccccc---cCcchhhhhhcccHHHHHHHHHHHhhhh----eeeHHHHhcCCCCCCHHH
Confidence 999999999999999999999876544 7889999999999999999999999999 99999999999999875
Q ss_pred hhHHHHHH-------HHHHHHh-----------ccCcccc-------ccc------------CCCCchHHHHHHHHHHHH
Q 042701 547 MENVVSVA-------MLARRLL-----------LEEPEMV-------VDK------------SEIHEHPLALLAEETKKL 589 (1075)
Q Consensus 547 me~l~sl~-------~~~~kil-----------~ed~~~~-------yi~------------~~~~~~~L~~LA~di~~L 589 (1075)
+++|.|.+ ++.+|++ +.||.++ ||+ ..++|..|+.| |..+
T Consensus 579 lqdlkstvdlltsitffrmkvqelqspprasqvvkdcvkaclnstye~ifnnchelys~s~~nldfw~klit~---ivsi 655 (1283)
T KOG1011|consen 579 LQDLKSTVDLLTSITFFRMKVQELQSPPRASQVVKDCVKACLNSTYEYIFNNCHELYSPSITNLDFWYKLITL---IVSI 655 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHH---HHHH
Confidence 88877655 6677775 2233332 444 46899999999 9999
Q ss_pred HHhhcccCcccccccCC--chhHHHHHHHHHHHHhhHHHHHHhhhccChhhhhccCchhHHHHH-HHHHhhhhcccchhh
Q 042701 590 LKRDSSIFMPILSKRHP--QATIVSASLLHKLYGNKLKPFSDGAEHLTEDVASVFPAADSLEQY-IISLITSTCEEETAA 666 (1075)
Q Consensus 590 a~~Ek~~fSPiL~~whp--~a~~VAA~tLh~~yg~dLK~~L~~v~~lt~d~~~vl~aAD~LEk~-L~ql~~sv~~~dg~k 666 (1075)
+++|+++|+|.|+||++ |+|.++|.+||++|++|||+.|+++.+ ...|++||+|+.+ .++|++.
T Consensus 656 ieedknsytp~lnqfpqelnvgk~saevmw~lfaqdmk~aleeh~k-----~~~cksadymnl~fkvk~ly~-------- 722 (1283)
T KOG1011|consen 656 IEEDKNSYTPALNQFPQELNVGKLSAEVMWSLFAQDMKYALEEHAK-----KKLCKSADYMNLHFKVKWLYN-------- 722 (1283)
T ss_pred HHhccccCChhhhhChhhhccccchHHHHHHHHHHHHHHHHHHHhh-----hccccCcchhheeeehhhhHH--------
Confidence 99999999999999988 999999999999999999999999965 7899999999985 5777443
Q ss_pred hhhccCCCc-----cchhhHHHHHHHHHHHhhhhHHHHHHHHHhc---CccccCCCCCCCCCcHHHHHHHHHHHHHHHHc
Q 042701 667 VYCRKLMPY-----QIESISGTLVLRWINSQLGRILSWVERAIQQ---ERWDPISPQQRHASSIVEVYRIVEETVDQFFA 738 (1075)
Q Consensus 667 ~~vr~~~Pf-----elE~~f~~~V~~Wi~e~~~k~~ewV~rAie~---E~WeP~S~~e~hSsSVVDIFrii~Etld~ff~ 738 (1075)
.|+++++-| ++..||.|||++|++++++...+++++|++. |+|+..|+|..||+||||+|+.+||+++++.+
T Consensus 723 eyv~dlp~~k~~vpeypawf~pfv~qwldenee~s~dflrga~e~dkkdgf~qtseha~fs~svvdvftqlnqsfeiikk 802 (1283)
T KOG1011|consen 723 EYVADLPTYKSSVPEYPAWFEPFVMQWLDENEEVSMDFLRGALERDKKDGFQQTSEHALFSCSVVDVFTQLNQSFEIIKK 802 (1283)
T ss_pred HHHhhchhhhccCCCchHHHHHHHHHHhccchHHHHHHHHhHhhcccccCccccchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 456666666 5899999999999999999999999999985 78999999999999999999999999999999
Q ss_pred CCCCCchHHH---HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhhhhhhhhhhhHhhhccCCCcchhhcccccc
Q 042701 739 LQVPMRSTEL---NALFRGIDNAFQVYANHVTDKLGSKEDLVPPEPVLTRYRKEAGIKAFVKKEILDPRMSEERRSSEIN 815 (1075)
Q Consensus 739 L~wp~~~~la---t~L~kgI~~~lq~Y~~~V~~~~g~ke~~iP~~P~LTR~~kes~~~~~~KKa~~e~~~p~e~~~~~~~ 815 (1075)
|+||++...+ ++++|+|++++.+|++.+.+ +| |.. |.+|+ .
T Consensus 803 lecpdp~i~ah~mrrfakti~kvllqyadivsk------df-p~y-----~~kek----------l-------------- 846 (1283)
T KOG1011|consen 803 LECPDPEIAAHYMRRFAKTINKVLLQYADIVSK------DF-PKY-----CHKEK----------L-------------- 846 (1283)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh------hh-hhh-----hhhcc----------C--------------
Confidence 9999998766 99999999999999999855 33 332 43332 1
Q ss_pred ccccccchhhhccHHHHHHHHHHHHHHHHhhhccCCCchhhhhhHHhhhhc--CCCcccchhhh-HHHHHHHHHHHHHHh
Q 042701 816 ILTTAALCVQLNTLHYAISQLNKLEDSILERWTRKKPHENFLKKLVEEKSK--SFTKNDTFDGS-RKDINAAIDRICEFT 892 (1075)
Q Consensus 816 ~~f~p~lCVrLNNLeyi~~qLd~LEk~I~~~~~~~~ss~~~Lsps~~~~~~--~~~ls~~F~~s-r~ai~~aI~ql~e~i 892 (1075)
.||.+||.++++.||+++++.|.++..+...+.. -+.++.+.| .+.++..|..+ +..|.+++.||++++
T Consensus 847 ------pcilmnnvqqlrvqlekmfeamggkeld~ea~d~--lk~lqvkln~vldels~~f~tsfqphi~e~v~qmg~il 918 (1283)
T KOG1011|consen 847 ------PCILMNNVQQLRVQLEKMFEAMGGKELDEEAGDV--LKELQVKLNSVLDELSAVFVTSFQPHIHECVIQMGDIL 918 (1283)
T ss_pred ------CeeeeccHHHHHHHHHHHHHHhcchhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHH
Confidence 7999999999999999999999987776655432 234444443 44788889888 788999999999987
Q ss_pred ccceeeeccchhhhhhccCCccchhhHHHhhHhHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc----------
Q 042701 893 GTKIIFWDLREPFIDNLYKPSVSKSRLESLIEPLDVELSKLCDVIVEPLRDRVVTGLLQASLDGLLRVLL---------- 962 (1075)
Q Consensus 893 a~rvVF~Dlr~~~~d~LY~g~Va~sRI~PlL~~Ld~~L~~l~s~l~d~vr~rVvkeL~KAs~e~~l~VLL---------- 962 (1075)
. ..++.-...-.+...+++.++|+|+.||.||..+++.|++++.+||++++||.++..|++.++
T Consensus 919 ~------qvkgt~~a~~sva~dad~vl~plmdlldgnlt~fa~~cektvlk~vlkelwkivm~tmek~ivlppltdqt~~ 992 (1283)
T KOG1011|consen 919 V------QVKGTGLAKTSVAQDADAVLEPLMDLLDGNLTLFADQCEKTVLKRVLKELWKIVMNTMEKRIVLPPLTDQTLL 992 (1283)
T ss_pred h------hhcccccchhhcccchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCCcchhHH
Confidence 3 334332112223345688999999999999999999999999999999999999999987533
Q ss_pred ----------------------------------CCCCCCccChhhHHHHHHHHHHHHHhhhcCCCCCcHHHHHHH--HH
Q 042701 963 ----------------------------------NGGPFRVFFPSDAKQLEEDLEILKEFFISGGDGLPRGVVENQ--VA 1006 (1075)
Q Consensus 963 ----------------------------------aGGpsR~Fs~~D~~ilEeDL~~LKdfF~A~GeGLp~e~Vek~--~~ 1006 (1075)
.....|+++|+||.+++-.|+.||+||||+|.||++.++||+ ++
T Consensus 993 ~~l~~~ki~~~t~~tq~~f~aak~l~lsk~k~hmvree~ksltpkqcavld~aldtikq~fhagg~glkktflekspdlq 1072 (1283)
T KOG1011|consen 993 KQLPNAKIGDVTKLTQTIFQAAKELNLSKLKDHMVREEEKSLTPKQCAVLDLALDTIKQYFHAGGKGLKKTFLEKSPDLQ 1072 (1283)
T ss_pred hccccccccchhhHHHHHHHHHHhcchhhHHHHHHHHHhccCCccceehhhhhHHHHHHHHhccCcchhhhHhhcCccHH
Confidence 112357999999999999999999999999999999999999 99
Q ss_pred HHHHHHhhcccchHHHHHHHHhccc
Q 042701 1007 RARHVVKLHGYETRELIDDLRSGSS 1031 (1075)
Q Consensus 1007 ~l~~VL~Ly~q~Td~LIe~f~~~~~ 1031 (1075)
+++++|+||+|+||+||+.|++...
T Consensus 1073 slryalslytqttd~liktfv~sq~ 1097 (1283)
T KOG1011|consen 1073 SLRYALSLYTQTTDQLIKTFVTSQR 1097 (1283)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 9999999999999999999998763
No 3
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-18 Score=203.27 Aligned_cols=492 Identities=19% Similarity=0.252 Sum_probs=315.3
Q ss_pred hHHHHHHHHHhhhhhhccC--chhHHHHHHHHhhhccccccCCccchhhhhhhhhhhhhcCCCcchHHHHHHHHhHHHHH
Q 042701 452 TMHYTCYALVLFRQYVITS--EQGMLQHAIDQLKKIPLKEQRGPQERLHLKSLLSKVEVEGGSQSFSFLRSFLLPIQKWA 529 (1075)
Q Consensus 452 ~~Hn~cf~WvLF~qyv~Tg--e~~Ll~~a~~~l~~v~~~~~~~~~~~~y~k~l~~~~~~~~~~~~~~lL~s~L~si~~W~ 529 (1075)
.+|-+---|+-|+...-|- ++.+|-..++-+.+-=.-...-++| -- .-|.-.+++....+
T Consensus 365 dlhlAm~rw~a~~~~~~s~~ld~s~L~~lL~di~~~W~~~~qL~~e--~E----------------~~LaDs~s~F~e~~ 426 (1103)
T KOG1328|consen 365 DLHLAMCRWLAFHSMIHSIDLDFSLLYKLLQDIIDKWQPLTQLDKE--EE----------------DMLADSFSSFDEYC 426 (1103)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhcCcccCCHH--HH----------------HHHHHHHHHHHHHH
Confidence 6788888999999988855 6666655544433211111101111 11 12445567777777
Q ss_pred HHhhhhhhhhccCCcch----hhHHHHHH-HH-----HHHHhc-cCccc-----c--------ccc----CCCCchH-HH
Q 042701 530 DKQLGDYHLHFAECPVM----MENVVSVA-ML-----ARRLLL-EEPEM-----V--------VDK----SEIHEHP-LA 580 (1075)
Q Consensus 530 ekrL~dYH~~F~~~~~~----me~l~sl~-~~-----~~kil~-ed~~~-----~--------yi~----~~~~~~~-L~ 580 (1075)
-..+---+++|+..|.. +|.|+-.- .+ ..++.- +..-+ + |.| ..++.+| |.
T Consensus 427 l~~~r~hRd~Fpa~n~~s~~rle~LlkClg~L~~~~~~~~~cPf~~~~~~~~~~al~kg~~~w~dr~~~~~q~~~~p~l~ 506 (1103)
T KOG1328|consen 427 LRMMREHRDKFPASNRNSGERLESLLKCLGALRESPFYQKYCPFKRPFHAHLESALVKGAEDWIDRSIESVQDPDPPKLL 506 (1103)
T ss_pred HHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHhcCcchHhhCCCCccchHHHHHHHHhhhHHHHHHHHhccCCCCCchhH
Confidence 77888888999998874 44444221 11 011110 00000 0 333 2233444 43
Q ss_pred HHH----HHH-----------HHHHHhhcccCcccccccCCchhHHHHHHHHHHHHhhHHHHHHhhhccChhhhhccCc-
Q 042701 581 LLA----EET-----------KKLLKRDSSIFMPILSKRHPQATIVSASLLHKLYGNKLKPFSDGAEHLTEDVASVFPA- 644 (1075)
Q Consensus 581 ~LA----~di-----------~~La~~Ek~~fSPiL~~whp~a~~VAA~tLh~~yg~dLK~~L~~v~~lt~d~~~vl~a- 644 (1075)
.++ .|+ .+++. ..+|+=+|+++. +..+..+|......=|..+..-..+++ .+-.+-
T Consensus 507 ~~~~~i~~d~q~~~~~Yaalf~~v~~--idyf~lt~~q~d----rlv~Ee~~s~~~~~~~~~~~sq~~ls~--~~~~pv~ 578 (1103)
T KOG1328|consen 507 LQLLNIVNDQQSRFLHYAALFREVAR--IDYFQLTLNQFD----RLVTEELTSELMSEKKMDLKSQMRLSA--AQDPPVE 578 (1103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--cceeeeeHHHHH----HHHHHHHHHHHhchhhhhhhhhhhccc--ccCCCcc
Confidence 322 222 12222 338888888876 333445555555544444444444443 222333
Q ss_pred hhHHHHHHH-----HHhhhhcccchhhhhhccCCCc---cchhhHHHHHHHHHHHhhhhHHHHHHHHHhcCccccCCCCC
Q 042701 645 ADSLEQYII-----SLITSTCEEETAAVYCRKLMPY---QIESISGTLVLRWINSQLGRILSWVERAIQQERWDPISPQQ 716 (1075)
Q Consensus 645 AD~LEk~L~-----ql~~sv~~~dg~k~~vr~~~Pf---elE~~f~~~V~~Wi~e~~~k~~ewV~rAie~E~WeP~S~~e 716 (1075)
.+-+|.||. ++-+.. .-+...|- +...+|.|-|+.|+.-..+|...-|+-|++-|.=.|.+...
T Consensus 579 ~~lfeL~l~l~~f~~l~~~~--------~a~~~r~lals~~ha~F~p~ik~w~~V~k~kAl~Rv~~a~~mD~~~~~~~~~ 650 (1103)
T KOG1328|consen 579 DDLFELMLILMAFVELRNYR--------LANRVRVLALSEWHAIFNPGIKKWLEVAKEKALARVHLACQMDMPISTSSDM 650 (1103)
T ss_pred ccHHHHHHHHHHHHHHHhhc--------ccCCCcchhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHhccCCccccchhh
Confidence 345666733 332221 01122233 57889999999999999999999999999999999999889
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCCchHHH---HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhhhhhhhhh
Q 042701 717 RHASSIVEVYRIVEETVDQFFALQVPMRSTEL---NALFRGIDNAFQVYANHVTDKLGSKEDLVPPEPVLTRYRKEAGIK 793 (1075)
Q Consensus 717 ~hSsSVVDIFrii~Etld~ff~L~wp~~~~la---t~L~kgI~~~lq~Y~~~V~~~~g~ke~~iP~~P~LTR~~kes~~~ 793 (1075)
+||||.+|+=.++.+.-++-..|+|||+.+-. +.|..-|..+...||+.+....+..+.+ + .
T Consensus 651 RhSSS~~d~~~~l~~i~efW~rl~wpD~~~ai~~~~QL~dvVCea~~~Yt~li~sa~~dtq~~-----------~-a--- 715 (1103)
T KOG1328|consen 651 RHSSSHIDICHILEQITEFWERLDWPDAGLAIEYTRQLVDVVCEAVTVYTQLIISAEGDTQEL-----------Q-A--- 715 (1103)
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh-----------h-h---
Confidence 99999999999999999999999999997644 8999999999999999997645433321 1 0
Q ss_pred hhHhhhccCCCcchhhccccccccccccchhhhccHHHHHHHHHHHHHHHHhhhccCCC-chhhhhhHHhhhhcCCCccc
Q 042701 794 AFVKKEILDPRMSEERRSSEINILTTAALCVQLNTLHYAISQLNKLEDSILERWTRKKP-HENFLKKLVEEKSKSFTKND 872 (1075)
Q Consensus 794 ~~~KKa~~e~~~p~e~~~~~~~~~f~p~lCVrLNNLeyi~~qLd~LEk~I~~~~~~~~s-s~~~Lsps~~~~~~~~~ls~ 872 (1075)
+ .+++..--+||.+||.++.+.-|+.-++.. .|..... .++.+.. .+..
T Consensus 716 ----------~---------~p~~~s~~lCv~iNNvE~VRrsl~~~~k~~--~~p~~~~~~~~~l~~---------~~~n 765 (1103)
T KOG1328|consen 716 ----------F---------IPSQLSHLLCVAINNVEQVRRSLNITEKLH--MDPRSRLNGNHMLKS---------EIEN 765 (1103)
T ss_pred ----------c---------ChHHHHHHHHHHHccHHHHHHHHhHHhhhc--cCcccccCccccCch---------HHHH
Confidence 1 112334459999999999999887666542 1211110 0111110 1111
Q ss_pred chhhhHHHHHHHHHHHHHHhccceeeeccchhhhhhccCC--ccchhhHHHhhHhHHhHHHHHHHhhhhhhHHHHHHHHH
Q 042701 873 TFDGSRKDINAAIDRICEFTGTKIIFWDLREPFIDNLYKP--SVSKSRLESLIEPLDVELSKLCDVIVEPLRDRVVTGLL 950 (1075)
Q Consensus 873 ~F~~sr~ai~~aI~ql~e~ia~rvVF~Dlr~~~~d~LY~g--~Va~sRI~PlL~~Ld~~L~~l~s~l~d~vr~rVvkeL~ 950 (1075)
..+.+...+.+-|+.+.-.++-|++ -+|+...++--... -..+..|.||++|||-.|..+.+++..+-+.||+..+|
T Consensus 766 ~les~~~~~~~e~~ri~~~Lt~~m~-~~~~K~vfHlawSPds~~~~~a~~PL~~yLD~~La~ln~~Ll~~Nf~Rvl~a~w 844 (1103)
T KOG1328|consen 766 RLESCESNICSEIDRIVGLLTERML-PQMKKHVFHLAWSPDSQLVEDALKPLTDYLDIELASLNKNLLHRNFLRVLSAQW 844 (1103)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhh-HHHHHHHHheecCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1222222333334444444444443 35554322222222 23467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCccChhhHHHHHHHHHHHHHhhhcCCCCCcHHHHHHH-HHHHHHHHhhcccchHHHHHHH
Q 042701 951 QASLDGLLRVLLNGGPFRVFFPSDAKQLEEDLEILKEFFISGGDGLPRGVVENQ-VARARHVVKLHGYETRELIDDL 1026 (1075)
Q Consensus 951 KAs~e~~l~VLLaGGpsR~Fs~~D~~ilEeDL~~LKdfF~A~GeGLp~e~Vek~-~~~l~~VL~Ly~q~Td~LIe~f 1026 (1075)
+.++..+... -|..+-..+.=+.-+.+.+..|-+||||+|+||+.|-++.. ...+..+|+|...+|++|||+|
T Consensus 845 ~~vl~~l~~~---~g~n~d~~~~Fy~Rl~eal~~Lv~FFHAeGqGL~le~L~t~~~~rl~~~L~lhkt~T~~lIe~f 918 (1103)
T KOG1328|consen 845 SIVLKLLREC---VGENVDMEPAFYHRLFEALHVLVEFFHAEGQGLSLEALDTNPEHRLVKILSLHKTPTEQLIEKF 918 (1103)
T ss_pred HHHHHHHHHH---hcccCCCChHHHHHHHHHHHHHHHHHhccCCCcchHhhccCcHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999988554 35555555555667889999999999999999999999877 7789999999999999999998
No 4
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=99.84 E-value=3.6e-21 Score=191.99 Aligned_cols=111 Identities=32% Similarity=0.483 Sum_probs=81.6
Q ss_pred hhhHHHhhHhHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-cC-----------------------CCCCCccC
Q 042701 916 KSRLESLIEPLDVELSKLCDVIVEPLRDRVVTGLLQASLDGLLRVL-LN-----------------------GGPFRVFF 971 (1075)
Q Consensus 916 ~sRI~PlL~~Ld~~L~~l~s~l~d~vr~rVvkeL~KAs~e~~l~VL-La-----------------------GGpsR~Fs 971 (1075)
++.|.|||+|||.||+++++.|.+.++.+||+++|+.++.+++..+ +. +|..|.++
T Consensus 1 e~ai~PL~dyLd~nL~~L~~~L~~~~f~~vl~~lW~~vl~~l~~llvlP~ls~~~~~~~~~~~~~~~~~~~~~~~~~~Lt 80 (137)
T PF10540_consen 1 EDAIEPLMDYLDSNLSILASNLEKENFKRVLKELWKVVLETLEELLVLPPLSDKPMLGLLQSAVSSLSSHGIGGSQRPLT 80 (137)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHTTS-G------------GG-TTS------------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHhhcccccCCCCC
Confidence 4679999999999999999999999999999999999998888887 42 36679999
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCCCCcHHHHHHH--HHHHHHHHhhcccchHHHHHHH
Q 042701 972 PSDAKQLEEDLEILKEFFISGGDGLPRGVVENQ--VARARHVVKLHGYETRELIDDL 1026 (1075)
Q Consensus 972 ~~D~~ilEeDL~~LKdfF~A~GeGLp~e~Vek~--~~~l~~VL~Ly~q~Td~LIe~f 1026 (1075)
+.+|++++.||+.|++||||||+|||.+++|+. ++.+++++.+|+++||+||++|
T Consensus 81 ~~q~~~l~~~L~~L~~FFhA~G~Gl~~~~L~ks~~yq~L~~~l~ly~~sT~~LI~~f 137 (137)
T PF10540_consen 81 PKQCDRLFKWLDTLKDFFHAEGNGLPLEFLEKSPEYQSLRYILSLYDQSTDELIEEF 137 (137)
T ss_dssp -TCHHHHHHHHHHHHHHHHCCCTS--HHHHHC-HHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHHHHccCHHHHHHHHHHHHhcCCHHHHHhhC
Confidence 999999999999999999999999999999554 8999999999999999999987
No 5
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=98.72 E-value=5.2e-07 Score=109.13 Aligned_cols=379 Identities=17% Similarity=0.223 Sum_probs=205.1
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHhhhccChhhhhccCchhHHHH--HHHHHhhhhcccchhhhhhccCCCccchhhHHHHH
Q 042701 608 ATIVSASLLHKLYGNKLKPFSDGAEHLTEDVASVFPAADSLEQ--YIISLITSTCEEETAAVYCRKLMPYQIESISGTLV 685 (1075)
Q Consensus 608 a~~VAA~tLh~~yg~dLK~~L~~v~~lt~d~~~vl~aAD~LEk--~L~ql~~sv~~~dg~k~~vr~~~PfelE~~f~~~V 685 (1075)
+-..-+...|.+++..++.+... -+.+.+-+.. | .+.|.+..+..+... ...+.|-=.++....++
T Consensus 138 I~~~y~~~YH~~l~~~l~~l~~~----------~l~~~~ll~ll~W-~~~Y~~~m~~~~l~~-~~~l~plL~~~~~~~L~ 205 (566)
T PF06046_consen 138 IFNTYVSMYHNALSDHLQELISP----------DLEANDLLSLLSW-VNTYPSIMGHPDLAI-KEQLGPLLPDEKLEELE 205 (566)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccC----------CCCHHHHhhheec-hhhChHhhcCCcccc-hhhccCCCChhHHHHHH
Confidence 55555667777777777655111 1222222221 1 222333222222211 23455555567778999
Q ss_pred HHHHHHhhhhHHHHHHHHHhcCc--c----ccC-C-CCCCCCCcHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHH
Q 042701 686 LRWINSQLGRILSWVERAIQQER--W----DPI-S-PQQRHASSIVEVYRIVEETVDQFFALQVPMRSTELNALFRGIDN 757 (1075)
Q Consensus 686 ~~Wi~e~~~k~~ewV~rAie~E~--W----eP~-S-~~e~hSsSVVDIFrii~Etld~ff~L~wp~~~~lat~L~kgI~~ 757 (1075)
..++.....++.+|+.|++++|. | +|. + +...|++..+|||+|++|.++.... .....++...+..+.+
T Consensus 206 ~~Yl~~~~~~~~eW~~n~l~~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va~~---~l~~~v~~~v~~~~~~ 282 (566)
T PF06046_consen 206 DDYLSRIQKKMKEWMDNILEQEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVASE---SLQGKVLQRVLEELAN 282 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHH
Confidence 99999999999999999999874 3 443 2 3456888999999999999999921 1222344566666677
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCcchhhhhhhhhhhhhHhhhccCCCcchhhccccccccccccchhhhccHHHHHHHHH
Q 042701 758 AFQVYANHVTDKLGSKEDLVPPEPVLTRYRKEAGIKAFVKKEILDPRMSEERRSSEINILTTAALCVQLNTLHYAISQLN 837 (1075)
Q Consensus 758 ~lq~Y~~~V~~~~g~ke~~iP~~P~LTR~~kes~~~~~~KKa~~e~~~p~e~~~~~~~~~f~p~lCVrLNNLeyi~~qLd 837 (1075)
.+..|-..+..-+ .+. +.+.... .+. .....+.+.+|..+||-......++
T Consensus 283 ~l~~~~~~~~~~~-----------------~~~----~~~~~~~---~~~-----~~~~~~~eyliA~~N~~~~~~~~~~ 333 (566)
T PF06046_consen 283 FLKSYQDAWQEFK-----------------EEH----FKDRSSV---KPK-----ENPPGYLEYLIAVANNCLRCRDYVE 333 (566)
T ss_dssp HHHHHHHHHHHHH-----------------HHH----HHHHHHH---HHC-----C--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------HHH----HHhhhcc---ccc-----ccccchHHHHHHHhccHHHHHHHHH
Confidence 7777766664411 000 0000000 000 0122456779999999999999888
Q ss_pred HHHHHHHhhhccCCCchhhhhhHHhhhhcCCCcccchhhhHHHHHHHHHHHHHHhccceeeeccchhhhhhccCCc-cch
Q 042701 838 KLEDSILERWTRKKPHENFLKKLVEEKSKSFTKNDTFDGSRKDINAAIDRICEFTGTKIIFWDLREPFIDNLYKPS-VSK 916 (1075)
Q Consensus 838 ~LEk~I~~~~~~~~ss~~~Lsps~~~~~~~~~ls~~F~~sr~ai~~aI~ql~e~ia~rvVF~Dlr~~~~d~LY~g~-Va~ 916 (1075)
.++..+...... ...... ...+....+.-....+.|++.+++. ||.|+...| ..|+... ..+
T Consensus 334 ~l~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~l~~~~~~~L~~~-----if~Dl~p~~-~~Lft~~W~~~ 396 (566)
T PF06046_consen 334 SLEQKFEEKVSQ----------KYMERI-SSDLEELMDGFDDLAKECCQYLLEE-----IFNDLKPHF-KKLFTKKWYSG 396 (566)
T ss_dssp HHHHHHHTTS-H----------HHHHHH-HHHHCTTHHHHHHHHHHHHHHHHHH-----HHHCTHHHH-CTTTSGGGCTS
T ss_pred HHHHhcccccch----------HHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHH-HHhCcCcCcCc
Confidence 888776442210 000000 0011122222233345556666665 477877654 2232211 112
Q ss_pred hhHHHhhHhHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCC---CccChhhHHHHHHHHHHHHHhhhcCC
Q 042701 917 SRLESLIEPLDVELSKLCDVIVEPLRDRVVTGLLQASLDGLLRVLLNGGPF---RVFFPSDAKQLEEDLEILKEFFISGG 993 (1075)
Q Consensus 917 sRI~PlL~~Ld~~L~~l~s~l~d~vr~rVvkeL~KAs~e~~l~VLLaGGps---R~Fs~~D~~ilEeDL~~LKdfF~A~G 993 (1075)
..++.++..++..+.-+...+....++.++.++...++..++..++.+..+ +.-..+=.+.|..|.+.|++||-.-|
T Consensus 397 ~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~ 476 (566)
T PF06046_consen 397 EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG 476 (566)
T ss_dssp -HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778889999999999999989999999999999999999999999986632 22234445789999999999999988
Q ss_pred CCCcHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHhcccccccCCCCCCCCCcccchhhhccCCC
Q 042701 994 DGLPRGVVENQVARARHVVKLH-GYETRELIDDLRSGSSQDMLGTRGKLGADSETLLRILCHRSD 1057 (1075)
Q Consensus 994 eGLp~e~Vek~~~~l~~VL~Ly-~q~Td~LIe~f~~~~~~~~~g~~~k~~~d~nTILRVLchR~D 1057 (1075)
..+.+...++.+..++.+. ..+++.+...+..... .+. ....+.|..||..|.|
T Consensus 477 ---~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~--~yp-----D~~~~~v~alL~~R~D 531 (566)
T PF06046_consen 477 ---SKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQ--KYP-----DISEEHVEALLALRGD 531 (566)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHC--C-T-----T--SHHHHHHHCT-TT
T ss_pred ---ccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCC-----CCCHHHHHHHHHhccC
Confidence 7888888899999999998 7777777666655543 111 1346788999999986
No 6
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0026 Score=77.34 Aligned_cols=392 Identities=17% Similarity=0.190 Sum_probs=207.1
Q ss_pred ccCccccc-ccCCchhHHHHHHHHHHHHhhHHHHHHhhhccChhh---hhccCchhHHHHHHHHHhhhh----cccchhh
Q 042701 595 SIFMPILS-KRHPQATIVSASLLHKLYGNKLKPFSDGAEHLTEDV---ASVFPAADSLEQYIISLITST----CEEETAA 666 (1075)
Q Consensus 595 ~~fSPiL~-~whp~a~~VAA~tLh~~yg~dLK~~L~~v~~lt~d~---~~vl~aAD~LEk~L~ql~~sv----~~~dg~k 666 (1075)
..|.||+= -|| ++.==..++..-=-.+|...|.+..+ -+++ +--|+..-.+|+||-.=+..+ ..+++++
T Consensus 277 ~k~~~iFP~dW~--v~~RLt~eFc~~Tr~~L~~Il~~~~~-~~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~ 353 (793)
T KOG2180|consen 277 EKWKPIFPADWH--VAYRLTIEFCHQTRKQLESILKRRKK-EPDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQ 353 (793)
T ss_pred HhccccCCcccc--hhHHHHHHHHHHHHHHHHHHHHHhhh-CccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccc
Confidence 45666663 377 44333344445555677777777542 2222 233455667788765544321 0122222
Q ss_pred hhhccCCCcc--chhhHHHHHHHHHHHhhhhHHHHHHHHHhcCccc--cCCCCCCCC---CcHHHHHHHHHHHHHHHHcC
Q 042701 667 VYCRKLMPYQ--IESISGTLVLRWINSQLGRILSWVERAIQQERWD--PISPQQRHA---SSIVEVYRIVEETVDQFFAL 739 (1075)
Q Consensus 667 ~~vr~~~Pfe--lE~~f~~~V~~Wi~e~~~k~~ewV~rAie~E~We--P~S~~e~hS---sSVVDIFrii~Etld~ff~L 739 (1075)
-..++-++|+ +.+.|+|++.-||+.++..+.+-+++-.+.++|. |.++.+-+| +|-.|+|..-+-++-+..+|
T Consensus 354 ~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~~p~~~~~~~s~vlpSsadlF~~Ykkcltq~~~L 433 (793)
T KOG2180|consen 354 FEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDGEPKSNTDEESLVLPSSADLFVAYKKCLTQCSEL 433 (793)
T ss_pred cccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccCccHHHHHHHHHHHHHHHHHh
Confidence 2233345674 9999999999999999999999999999999996 655333333 47899999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhhhhhhhhhhhHhhhccC--CCcchhhcccccccc
Q 042701 740 QVPMRSTELNALFRGIDNAFQVYANHVTDKLGSKEDLVPPEPVLTRYRKEAGIKAFVKKEILD--PRMSEERRSSEINIL 817 (1075)
Q Consensus 740 ~wp~~~~lat~L~kgI~~~lq~Y~~~V~~~~g~ke~~iP~~P~LTR~~kes~~~~~~KKa~~e--~~~p~e~~~~~~~~~ 817 (1075)
-=.+++.++ .++ -+.+.++.|+.++..+. +|..|-...+.......+-+..+ .++++
T Consensus 434 s~n~dpl~~-~~~-~f~k~LreYa~kil~~~---------lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d---------- 492 (793)
T KOG2180|consen 434 SENNDPLIA-LLA-VFSKWLREYAQKILLGN---------LPDTTSSSDGAAVYLLLRIEGAEYCRFTID---------- 492 (793)
T ss_pred ccCCchHHH-HHH-HHHHHHHHHHHHHhhcc---------CCcccccccCchhhhHHHhhhhhhhcccHH----------
Confidence 744433333 333 78999999999986622 44333221111111111111111 11111
Q ss_pred ccccchhhhccHHHHHHHHHHHHHHHHhhhccCCCchhhhhhHHhhhhcCCCcccchhhh-HHHHHHHHHHH---HHHhc
Q 042701 818 TTAALCVQLNTLHYAISQLNKLEDSILERWTRKKPHENFLKKLVEEKSKSFTKNDTFDGS-RKDINAAIDRI---CEFTG 893 (1075)
Q Consensus 818 f~p~lCVrLNNLeyi~~qLd~LEk~I~~~~~~~~ss~~~Lsps~~~~~~~~~ls~~F~~s-r~ai~~aI~ql---~e~ia 893 (1075)
..-..|..||+.+|...---.+|+++.......-.. .++ +. .--..|-.. ..+++-.++.+ |+--.
T Consensus 493 ~l~di~~~lst~e~~~~tt~qle~kl~e~~~~~~~~--~vs--~s------~~r~~~~~~~~~s~q~lv~D~e~a~~~~l 562 (793)
T KOG2180|consen 493 QLLDICCILSTAEYCLATTIQLEKKLKEIVDASYIK--GVS--FS------EEREVFSSKISVSLQFLVQDLENALDPDL 562 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcc--hH------HHHHHHHHHHhhhHHHHHHHHHHhhCccc
Confidence 122469999999999998888888865533211000 000 00 000111111 11111111111 11111
Q ss_pred cceeeeccchhhhhhccCCccchhhHHHhhHhHHhHHHHHHHhhhhhhH-HHH-HHHHHHHHHHHHHHHhcCCCCCCccC
Q 042701 894 TKIIFWDLREPFIDNLYKPSVSKSRLESLIEPLDVELSKLCDVIVEPLR-DRV-VTGLLQASLDGLLRVLLNGGPFRVFF 971 (1075)
Q Consensus 894 ~rvVF~Dlr~~~~d~LY~g~Va~sRI~PlL~~Ld~~L~~l~s~l~d~vr-~rV-vkeL~KAs~e~~l~VLLaGGpsR~Fs 971 (1075)
.++-+.+ |.++ .+|++. .|.+..+..|+......+.+.+. +|. .+.-+-+...+|..--+ ++-.|.+.
T Consensus 563 t~msk~~-----~~~l--~~vgDQ--ss~v~s~~~h~~q~~~~i~~~~~~~r~~f~~fc~r~a~~f~~kf~-~~l~R~k~ 632 (793)
T KOG2180|consen 563 TPMSKMQ-----WQNL--EGVGDQ--SSYVSSLNFHLSQFVPLIRDALALDRKYFAQFCVRLAASFIPKFL-NVLFRAKP 632 (793)
T ss_pred ChHHHHH-----HHHh--cCcccc--chhhHHHHHHHHhhhHHHHHHhccccchHHHhhHHHHhhcchHHH-HHHHHhhh
Confidence 1111111 2221 122222 35555666666665555555443 222 22222222222221111 11122222
Q ss_pred h--hhHHHHHHHHHHHHHhhhcCCCC--C---cH---HHHHHHHHHHHHHHhh-c--ccchHHHHHHHHhcc
Q 042701 972 P--SDAKQLEEDLEILKEFFISGGDG--L---PR---GVVENQVARARHVVKL-H--GYETRELIDDLRSGS 1030 (1075)
Q Consensus 972 ~--~D~~ilEeDL~~LKdfF~A~GeG--L---p~---e~Vek~~~~l~~VL~L-y--~q~Td~LIe~f~~~~ 1030 (1075)
. --++-+--|+.++|++|+..|+= + .. ..|.+....+.-|+.+ | -.+.+.-+|+|..+.
T Consensus 633 ~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~~~~y~~~~~~~m~~~e~iiK~lm~p~~~~~~f~e~yikL~ 704 (793)
T KOG2180|consen 633 ISVVGAEQLLLDTESLKDALLTLPPLRSLFNDKRPYKRHVDNNMTQAEMIIKVLMTPLDPADDFYEQYIKLL 704 (793)
T ss_pred HhhhHHHHHHHHHHHHHHHhhcCCchhhhccccchHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhc
Confidence 2 22355778899999999988871 2 22 2334445666666663 3 466788888887766
No 7
>PF06292 DUF1041: Domain of Unknown Function (DUF1041); InterPro: IPR010439 This entry represents Calcium-dependent secretion activators that are involved in the exocytosis of vesicles filled with neurotransmitters and neuropeptides. They also may specifically mediate the Ca2+-dependent exocytosis of large dense-core vesicles (DCVs) and other dense-core vesicles by acting as a PtdIns(4,5)P2-binding protein that acts at prefusion step following ATP-dependent priming and participates in DCVs-membrane fusion []. However, it probably also participates in small clear synaptic vesicles (SVs) exocytosis and it is unclear whether its function is related to Ca2+ triggering []. This protein is often found in tandem repeats and co-occur with C2 domains IPR000008 from INTERPRO, Protein kinase C, phorbol ester/diacylglycerol binding regions IPR002219 from INTERPRO and PH domains IPR001849 from INTERPRO.
Probab=97.46 E-value=0.00011 Score=71.20 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=52.3
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhhcccCcccccccCC--chhHHHHHHHHHHHHhhHHHHHHh
Q 042701 569 VDKSEIHEHPLALLAEETKKLLKRDSSIFMPILSKRHP--QATIVSASLLHKLYGNKLKPFSDG 630 (1075)
Q Consensus 569 yi~~~~~~~~L~~LA~di~~La~~Ek~~fSPiL~~whp--~a~~VAA~tLh~~yg~dLK~~L~~ 630 (1075)
++++.++++.|+.| +.++++.++++|+|+|++|.. +.+.++|.++|.+|+.||+..|+.
T Consensus 45 ~~k~Le~w~~L~eL---~v~vleed~e~y~~vln~F~~~~~l~~~hAE~fWsLfa~Dm~~aLee 105 (106)
T PF06292_consen 45 PIKKLEFWIRLIEL---CVSVLEEDKEHYAPVLNQFPWELDLGVEHAEIFWSLFAVDMDAALEE 105 (106)
T ss_pred hhHhHHHHHHHHHH---HHHHHHhhhhhhhhHhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44456788888888 899999999999999999754 999999999999999999999975
No 8
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=96.76 E-value=0.092 Score=63.17 Aligned_cols=150 Identities=15% Similarity=0.282 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHhhcccCcccccccCCchhHHHHHHHHHHHHhhHHHHHHhhhccChhhhhccCchhHHHHHHHHHhh
Q 042701 578 PLALLAEETKKLLKRDSSIFMPILSKRHPQATIVSASLLHKLYGNKLKPFSDGAEHLTEDVASVFPAADSLEQYIISLIT 657 (1075)
Q Consensus 578 ~L~~LA~di~~La~~Ek~~fSPiL~~whp~a~~VAA~tLh~~yg~dLK~~L~~v~~lt~d~~~vl~aAD~LEk~L~ql~~ 657 (1075)
-++.||+-+-++....-....-.+. |-|.....-|.+.|.+|+.||-..|+-- .+|.-..+|---.|+.||.. +
T Consensus 805 d~irlaelcievlqqneehhgeafa-wwsdll~ehae~fwslfsvdmdsalevq---p~dswdsfplfqllndflr~--d 878 (1218)
T KOG3543|consen 805 DMIRLAELCIEVLQQNEEHHGEAFA-WWSDLLSEHAEIFWSLFSVDMDSALEVQ---PHDSWDSFPLFQLLNDFLRS--D 878 (1218)
T ss_pred HHHHHHHHHHHHHHhhhhhcchHHH-hHHHHHHHHHHHHHHHHhcccchhcccC---CCCccccchHHHHHHHHHhh--h
Confidence 3455777666665554445554443 4455666678999999999998877533 23444444444444444332 1
Q ss_pred hhcccchhhhhhccCCCccchhhHHHHHHHHHHHhhhhHHHHHHHHHhcCccccCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 042701 658 STCEEETAAVYCRKLMPYQIESISGTLVLRWINSQLGRILSWVERAIQQERWDPISPQQRHASSIVEVYRIVEETVDQFF 737 (1075)
Q Consensus 658 sv~~~dg~k~~vr~~~PfelE~~f~~~V~~Wi~e~~~k~~ewV~rAie~E~WeP~S~~e~hSsSVVDIFrii~Etld~ff 737 (1075)
+ ++++..|.=.+-..|.|+|-++++--+..+..-++|-+++|+|+|..+ -|..--|+|=-++..--+++
T Consensus 879 ~--------~lcngkfhkhlq~~f~plvvryvdlmessiaqsihrgfe~e~wepvkn---gsatsedlfwkldalqtfv~ 947 (1218)
T KOG3543|consen 879 S--------SLCNGKFHKHLQQQFQPLVVRYVDLMESSIAQSIHRGFEKEKWEPVKN---GSATSEDLFWKLDALQTFVI 947 (1218)
T ss_pred h--------hcccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchhhccccccC---CCcchHhHHHHHHHHHHHHh
Confidence 1 344566777789999999999999999999999999999999999965 24455799999988888899
Q ss_pred cCCCCCc
Q 042701 738 ALQVPMR 744 (1075)
Q Consensus 738 ~L~wp~~ 744 (1075)
.|+||.+
T Consensus 948 dlhwpee 954 (1218)
T KOG3543|consen 948 DLHWPEE 954 (1218)
T ss_pred hcCCCHH
Confidence 9999976
No 9
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.07 E-value=0.053 Score=61.92 Aligned_cols=252 Identities=15% Similarity=0.172 Sum_probs=138.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhhhhhhhhhh
Q 042701 715 QQRHASSIVEVYRIVEETVDQFFALQVPMRSTELNALFRGIDNAFQVYANHVTDKLGSKEDLVPPEPVLTRYRKEAGIKA 794 (1075)
Q Consensus 715 ~e~hSsSVVDIFrii~Etld~ff~L~wp~~~~lat~L~kgI~~~lq~Y~~~V~~~~g~ke~~iP~~P~LTR~~kes~~~~ 794 (1075)
.-+||+.|..+++.++..++.+...-..-. +. ..-+++.+.+|.+.+....+ ..+ +..
T Consensus 27 ~lPFS~~vp~~c~~ir~fi~~~~~F~~~~~-~~----~~eid~~v~ks~d~lL~~~l------------~~~-----L~~ 84 (311)
T PF04091_consen 27 KLPFSQMVPMCCRQIRSFIEKCYKFSDDLY-QS----STEIDDIVRKSLDRLLTRVL------------NGS-----LKS 84 (311)
T ss_dssp -SSSBTHHHHHHHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHH------------HHH-----HHH
T ss_pred eCCCchHHHHHHHHHHHHHHHHHHHHHhcc-cc----hHHHHHHHHHHHHHHHHHHH------------HHH-----HHH
Confidence 468999999999999999998887531111 11 12355666666666533110 000 111
Q ss_pred hHhhhccCCCcchhhccccccccccccchhhhccHHHHHHHHHHHHHHHHhhhccCCCchhhhhhHHhhhhcCCCcccch
Q 042701 795 FVKKEILDPRMSEERRSSEINILTTAALCVQLNTLHYAISQLNKLEDSILERWTRKKPHENFLKKLVEEKSKSFTKNDTF 874 (1075)
Q Consensus 795 ~~KKa~~e~~~p~e~~~~~~~~~f~p~lCVrLNNLeyi~~qLd~LEk~I~~~~~~~~ss~~~Lsps~~~~~~~~~ls~~F 874 (1075)
..++ + ....+.+-.+.|++|...-...||+.+...-.......+.+ .-.....|
T Consensus 85 ~i~~----------------~-~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~~~~~~~---------~l~a~~~f 138 (311)
T PF04091_consen 85 KIRS----------------S-LNLSQIVQIVINLEYLEKACKELEEFLSSLRGIPQSAGGHI---------RLKATKMF 138 (311)
T ss_dssp HHT-----------------T-S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT-------------------------S
T ss_pred HHhc----------------C-CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccchHhH---------hhhhHHHH
Confidence 1111 1 34566888899999999999999998755332111110000 11234677
Q ss_pred hhhHHHHHHHHHHHHHHhcccee-eeccchhhhhhccCCccchhhHHHhhHhHHhHHHHHHHhhhhhhHHHHHHHHHHHH
Q 042701 875 DGSRKDINAAIDRICEFTGTKII-FWDLREPFIDNLYKPSVSKSRLESLIEPLDVELSKLCDVIVEPLRDRVVTGLLQAS 953 (1075)
Q Consensus 875 ~~sr~ai~~aI~ql~e~ia~rvV-F~Dlr~~~~d~LY~g~Va~sRI~PlL~~Ld~~L~~l~s~l~d~vr~rVvkeL~KAs 953 (1075)
..+|..+...|-. .+..|+- |.++-+.=|..--..+.++.-|..++.||+...+..-..|...++..+..+.|+.+
T Consensus 139 ~~~r~~Ae~~I~~---lv~~KIDe~lela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~hi 215 (311)
T PF04091_consen 139 KDARKAAEKRIFE---LVNSKIDEFLELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHI 215 (311)
T ss_dssp ---TTHHHHHHHH---HHHHHHHHHHTT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 7776655544332 2222221 12322211333233445677899999999999988888999999999999999999
Q ss_pred HHHHHHHhcCCCCCCccChhhHHHHHHHHHHHHHhhhcC-CCCCcHHHHHHHHHHHHHHHhhcccc
Q 042701 954 LDGLLRVLLNGGPFRVFFPSDAKQLEEDLEILKEFFISG-GDGLPRGVVENQVARARHVVKLHGYE 1018 (1075)
Q Consensus 954 ~e~~l~VLLaGGpsR~Fs~~D~~ilEeDL~~LKdfF~A~-GeGLp~e~Vek~~~~l~~VL~Ly~q~ 1018 (1075)
=+.|+..|++. .-+.++..=+.-++.|++.|.+|--.. ..|.....+......+|+.+.|+..+
T Consensus 216 s~~l~~~Ll~~-~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~ 280 (311)
T PF04091_consen 216 SESLLDLLLSD-DVKRINMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSD 280 (311)
T ss_dssp HHHHHHHHT----------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH--
T ss_pred HHHHHHHhcCC-cccccCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcC
Confidence 99999998854 456688888899999999999999876 11222223333345688999987443
No 10
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=95.91 E-value=0.076 Score=64.11 Aligned_cols=297 Identities=18% Similarity=0.184 Sum_probs=143.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhc-CccccCCC-------CCCCCCcHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 042701 682 GTLVLRWINSQLGRILSWVERAIQQ-ERWDPISP-------QQRHASSIVEVYRIVEETVDQFFALQVPMRSTELNALFR 753 (1075)
Q Consensus 682 ~~~V~~Wi~e~~~k~~ewV~rAie~-E~WeP~S~-------~e~hSsSVVDIFrii~Etld~ff~L~wp~~~~lat~L~k 753 (1075)
......|++--.+-..+=++..+.. +.|++..+ .-+-..|++++.++++...+-+..|+-...- ++.|.+
T Consensus 131 ~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~r--l~Fl~~ 208 (494)
T PF04437_consen 131 PDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVEADSDELKPTKSAERFVKLLESITDRYRPLPSLSHR--LRFLID 208 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---G--G--GHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccCCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHH--HHHHHH
Confidence 3456778776666666666665553 68888632 2245678888888888888887776532221 111111
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhhhhhhhhhhhHhhhccCCCcchhhccccccccccccchhhhccHHHHH
Q 042701 754 GIDNAFQVYANHVTDKLGSKEDLVPPEPVLTRYRKEAGIKAFVKKEILDPRMSEERRSSEINILTTAALCVQLNTLHYAI 833 (1075)
Q Consensus 754 gI~~~lq~Y~~~V~~~~g~ke~~iP~~P~LTR~~kes~~~~~~KKa~~e~~~p~e~~~~~~~~~f~p~lCVrLNNLeyi~ 833 (1075)
.=-..+..|-..+.+.+-..+.. ... .+. ........++|..+|+.+|+.
T Consensus 209 iql~lld~~~~~L~~~~~~~~~~-~s~-----~~~------------------------~~~~~~l~~l~~~lnsa~yi~ 258 (494)
T PF04437_consen 209 IQLPLLDDYHDRLSQSLEAFESS-TST-----LAS------------------------LSGDSGLERLCKILNSANYIE 258 (494)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHT----------SC------------------------EEHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-ccc-----hhh------------------------ccCCchHHHHHHHHHHHHHHH
Confidence 11133333333333321000000 000 000 001133567999999999999
Q ss_pred HHHHHHHHHHHhh---hccCCCchhhhhhHHhhhhcCCCcccchhhhHHHHHHHHHHHHHHhccceeeeccch-------
Q 042701 834 SQLNKLEDSILER---WTRKKPHENFLKKLVEEKSKSFTKNDTFDGSRKDINAAIDRICEFTGTKIIFWDLRE------- 903 (1075)
Q Consensus 834 ~qLd~LEk~I~~~---~~~~~ss~~~Lsps~~~~~~~~~ls~~F~~sr~ai~~aI~ql~e~ia~rvVF~Dlr~------- 903 (1075)
..|....+.+--= ..........+.+.....+ ..-.+.|+.+......-.+++.+.+...++ .+.+.
T Consensus 259 ~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~--~~~~siFde~i~~y~~l~~~~~~~iv~~v~-~~~k~~lk~Y~k 335 (494)
T PF04437_consen 259 NVLREWSEDVFFLQMRAKESESSNNSLEDIANETS--SEEGSIFDETISAYEKLRKRMLESIVDRVV-KEFKASLKAYFK 335 (494)
T ss_dssp HHHHHHCTSHHHH------------HHHHHHHHHT--T--S-TTHHHHHHHHHHHTHHHHHHHHHHH-HHHHHHTHHHHT
T ss_pred HHHHHhcCCCeeehhhccchhhccccccccccccc--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 9998776643211 0000000001111111111 123568888876665554444444433222 12221
Q ss_pred -hhhhhccCC-----ccchhhHHHhhHhHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCccChhhHHH
Q 042701 904 -PFIDNLYKP-----SVSKSRLESLIEPLDVELSKLCDVIVEPLRDRVVTGLLQASLDGLLRVLLNGGPFRVFFPSDAKQ 977 (1075)
Q Consensus 904 -~~~d~LY~g-----~Va~sRI~PlL~~Ld~~L~~l~s~l~d~vr~rVvkeL~KAs~e~~l~VLLaGGpsR~Fs~~D~~i 977 (1075)
.-|...... ...++.+-|.|..|...|+.+...+....+.++-+.|...+-+-|..-++- ...|++.-..-
T Consensus 336 ~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~Il~---~n~Fs~~Ga~Q 412 (494)
T PF04437_consen 336 RSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESILM---SNKFSRAGAAQ 412 (494)
T ss_dssp --GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTTTT---TS-B-HHHHHH
T ss_pred ccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhh---cCeeChhHHHH
Confidence 113333222 223567889999999999999998877776666555555544444442333 23899999999
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHhhcccchHH
Q 042701 978 LEEDLEILKEFFISGGDGLPRGVVENQVARARHVVKLHGYETRE 1021 (1075)
Q Consensus 978 lEeDL~~LKdfF~A~GeGLp~e~Vek~~~~l~~VL~Ly~q~Td~ 1021 (1075)
+..|++.|...|.. ..+.| ++....++..+.|..++.+.
T Consensus 413 l~~D~~~L~~~~~~-~~~~p----~~~f~~l~E~~~LL~L~~~~ 451 (494)
T PF04437_consen 413 LQFDMRALFSVFSQ-YTPRP----EAFFKRLREACKLLNLPYGS 451 (494)
T ss_dssp HHHHHHHHHTTS---TTSGG-----HHHHHHHHHHHHHGGGG-C
T ss_pred HHHHHHHHHHHHHh-hccCH----HHHHHHHHHHHHHcCCCCcc
Confidence 99999999999988 33334 35566677777777666664
No 11
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=8.7 Score=48.41 Aligned_cols=348 Identities=15% Similarity=0.150 Sum_probs=195.2
Q ss_pred HHHHhhHHHHHHhhhccChhhhhccCchhHHHHHHHHHhhhhcccchhhhhhccCCCccchhhHHHHHHHHHHHhhhhHH
Q 042701 618 KLYGNKLKPFSDGAEHLTEDVASVFPAADSLEQYIISLITSTCEEETAAVYCRKLMPYQIESISGTLVLRWINSQLGRIL 697 (1075)
Q Consensus 618 ~~yg~dLK~~L~~v~~lt~d~~~vl~aAD~LEk~L~ql~~sv~~~dg~k~~vr~~~PfelE~~f~~~V~~Wi~e~~~k~~ 697 (1075)
.+|.+-+..++..+.+.-++..+.++ +=.|..++++...--.+. ...+..-|-=-.+....++....+..-.++.
T Consensus 273 ~~Yh~~ls~ll~dl~s~~l~~~eil~----llawV~~~~~~~~l~~~~-~~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ 347 (667)
T KOG2286|consen 273 ELYHQALSDLLRDLASEALELREILQ----LLAWVRNEYYTPLLQLNV-DVLRALGPLLRPKHVVALLDLYLERATANMK 347 (667)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHH----HHHHHHHHhcChhhhccc-hhhhhhcCccChhHHHHHHHHHHHHHHHHHH
Confidence 66777777777777654444333221 112223222221100000 0011222222334556677777777888999
Q ss_pred HHHHHHHhcC--cccc----CCCCC--CCCCcHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 042701 698 SWVERAIQQE--RWDP----ISPQQ--RHASSIVEVYRIVEETVDQFFALQVPMRSTELNALFRGIDNAFQVYANHVTDK 769 (1075)
Q Consensus 698 ewV~rAie~E--~WeP----~S~~e--~hSsSVVDIFrii~Etld~ff~L~wp~~~~lat~L~kgI~~~lq~Y~~~V~~~ 769 (1075)
+|+.++.+.| .|.- ..+.+ .|++=.+++|.|+.|.+..+... .++|.-.+-..+..|+....+
T Consensus 348 ewl~~~~e~e~~~~~~~~~P~rd~~g~~~t~~p~~~fqmi~q~l~~~~~~--------~~Dl~~~~~~~~~~~v~~f~~- 418 (667)
T KOG2286|consen 348 EWLMNALELEAAAWAKETEPPRDEEGYLYTPGPVIFFQMITQQLQVAAAT--------SSDLSGKILRSLLSEVPSFAR- 418 (667)
T ss_pred HHHHHHHHHHHHHhhhcCCCCccccccccCcccHHHHHhhHHHHHHHHhh--------HHHHHHHHHHHHHHHhHHHHH-
Confidence 9999999865 4543 22323 47888899999999999988775 344444444555555555433
Q ss_pred cCCCCCCCCCCcchhhhhhhhhhhhhHhhhccCCCcchhhccccccccccccchhh--hccHHHHHHHHHHHHHHHHhhh
Q 042701 770 LGSKEDLVPPEPVLTRYRKEAGIKAFVKKEILDPRMSEERRSSEINILTTAALCVQ--LNTLHYAISQLNKLEDSILERW 847 (1075)
Q Consensus 770 ~g~ke~~iP~~P~LTR~~kes~~~~~~KKa~~e~~~p~e~~~~~~~~~f~p~lCVr--LNNLeyi~~qLd~LEk~I~~~~ 847 (1075)
+| +.. -.+.+++ . |++ ...+.+..|+. .||+...+ .+..-+
T Consensus 419 -----~~-~~~---~~~~~e~----------~----~~~------~~~~l~~y~iA~~N~~~~~a~--------~~~~~~ 461 (667)
T KOG2286|consen 419 -----NY-PKA---QDEDQES----------H----RRE------QPEGLREYLIANINNNLKMAM--------LMVNLK 461 (667)
T ss_pred -----HH-HHh---HHHHHHh----------c----hhc------ccccHHHHHHHHHhchhHHHH--------HHHHHH
Confidence 11 000 0011111 0 000 11122233332 22222221 111111
Q ss_pred ccCCCchhhhhhHHhhhhcCCCcccchhhhHHHHHHHHHHHHHHhccceeeeccchhhh----hhccCCccchhhHHHhh
Q 042701 848 TRKKPHENFLKKLVEEKSKSFTKNDTFDGSRKDINAAIDRICEFTGTKIIFWDLREPFI----DNLYKPSVSKSRLESLI 923 (1075)
Q Consensus 848 ~~~~ss~~~Lsps~~~~~~~~~ls~~F~~sr~ai~~aI~ql~e~ia~rvVF~Dlr~~~~----d~LY~g~Va~sRI~PlL 923 (1075)
... +.+....++.....+.++..|.+.+ |.|+...|- ..=|.| +..+-+.
T Consensus 462 ~~~-----------------d~~~~~l~~~~~i~~~~~~~l~e~~-----~~d~~~~~~~lf~~~W~~g----~~~~~Iv 515 (667)
T KOG2286|consen 462 SKY-----------------DTLKGLLDGFIEIAKHGVSGLLEEI-----FLDLQPLLNKLFTKEWCAG----SVTENIV 515 (667)
T ss_pred hcc-----------------chhHHHhHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHhhhhhhch----hhHHHHH
Confidence 000 1122333344455566677777764 778876431 233444 4456678
Q ss_pred HhHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCccChhhHHHHHHHHHHHHHhhhcCCCCCcHHHHHH
Q 042701 924 EPLDVELSKLCDVIVEPLRDRVVTGLLQASLDGLLRVLLNGGPFRVFFPSDAKQLEEDLEILKEFFISGGDGLPRGVVEN 1003 (1075)
Q Consensus 924 ~~Ld~~L~~l~s~l~d~vr~rVvkeL~KAs~e~~l~VLLaGGpsR~Fs~~D~~ilEeDL~~LKdfF~A~GeGLp~e~Vek 1003 (1075)
..|+..|.-+....... +.++|-++-.+++-.+++-|+.+--+ -.+=.+-|..|.+.|++||---|+ +.+-+-.
T Consensus 516 ~T~~dy~~D~~~~~~~~-f~~fi~e~~~~~v~~Yl~~l~~kr~~---~~~~~~~i~~d~~~~~~~f~~~~~--~~~~~~~ 589 (667)
T KOG2286|consen 516 ATLDDYLPDFKELMGEY-FVRFIEEASLELVIEYLRALSKKRAS---IQELIEKIKSDAETLYHFFRKYGS--DVDTLIS 589 (667)
T ss_pred HHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHhhHHHHHHHHHHhCc--chhhhhh
Confidence 88888888888888888 99999999999999999999875444 333345688999999999998887 4443333
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHhcccccccCCCCCCCCCcccchhhhccCCC
Q 042701 1004 QVARARHVVKLHGYETRELIDDLRSGSSQDMLGTRGKLGADSETLLRILCHRSD 1057 (1075)
Q Consensus 1004 ~~~~l~~VL~Ly~q~Td~LIe~f~~~~~~~~~g~~~k~~~d~nTILRVLchR~D 1057 (1075)
....+..++.+. +.|.++..+...-. .+ + ....+.|-+||--|.|
T Consensus 590 ~~~~l~el~~~~--d~d~~~~~~~~l~~--~Y-p----D~~~~~l~~il~~R~d 634 (667)
T KOG2286|consen 590 TISTLAELISLQ--DPDLIKLEVSTLLE--CY-P----DIPKDHLEAILKIRGD 634 (667)
T ss_pred hhHHHHHHHhcC--ChHHHHHHHHHHHH--HC-C----CCcHHHHHHHHHHhcC
Confidence 344444444443 77888777766553 11 1 1346778888888877
No 12
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=94.59 E-value=14 Score=45.22 Aligned_cols=311 Identities=18% Similarity=0.239 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhc--Ccc-----ccCC--CCCCCCCcHHHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 042701 682 GTLVLRWINSQLGRILSWVERAIQQ--ERW-----DPIS--PQQRHASSIVEVYRIVEETVDQFFALQVPMRSTELNALF 752 (1075)
Q Consensus 682 ~~~V~~Wi~e~~~k~~ewV~rAie~--E~W-----eP~S--~~e~hSsSVVDIFrii~Etld~ff~L~wp~~~~lat~L~ 752 (1075)
+.+++.+.+-...|++||+.+..+. |+| +|.. +...+.+--+=.|.||.|-++.+-.=+ ...++--.+
T Consensus 374 g~L~~~Yt~l~~~Kl~EWv~nl~~~evd~F~~R~~ep~~Dsdg~l~l~Gt~~~fQmitqQ~e~ia~tn---~sdvvgiV~ 450 (742)
T COG5173 374 GELLEKYTKLAQEKLKEWVMNLTRIEVDKFYARNEEPSRDSDGKLVLPGTVSLFQMITQQLEPIAFTN---RSDVVGIVF 450 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCcCccCccHHHHHHHHHHHhhhhhcCC---ccchhhhhH
Confidence 4578888888999999999998875 444 3322 445577788999999999998876644 334444455
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhhhhhhhhhhhHhhhccCCCcchhhccccccccccccchhhhcc----
Q 042701 753 RGIDNAFQVYANHVTDKLGSKEDLVPPEPVLTRYRKEAGIKAFVKKEILDPRMSEERRSSEINILTTAALCVQLNT---- 828 (1075)
Q Consensus 753 kgI~~~lq~Y~~~V~~~~g~ke~~iP~~P~LTR~~kes~~~~~~KKa~~e~~~p~e~~~~~~~~~f~p~lCVrLNN---- 828 (1075)
..|...++.|++.-.+.+.+ ++ .+ -++.. ++..+| -+.-+-|+..-|
T Consensus 451 ~~i~~~~tk~q~~wks~l~e-e~-----------~k------q~~~n-pEs~~p----------~Gl~eyliav~Nd~lK 501 (742)
T COG5173 451 AHITRTITKYQEIWKSNLVE-EM-----------DK------QFKSN-PESSSP----------AGLEEYLIAVGNDGLK 501 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH-----------HH------HhcCC-CccCCc----------chHHHHHHHHcCCcch
Confidence 66777888888776553311 10 00 00000 111111 123334444443
Q ss_pred -HHHHHHHHHHHHHHHHhhhccCCCchhhhhhHHhhhhcCCCcccchhhhHHHHHHHHHHHHHHhccceeeeccchh---
Q 042701 829 -LHYAISQLNKLEDSILERWTRKKPHENFLKKLVEEKSKSFTKNDTFDGSRKDINAAIDRICEFTGTKIIFWDLREP--- 904 (1075)
Q Consensus 829 -Leyi~~qLd~LEk~I~~~~~~~~ss~~~Lsps~~~~~~~~~ls~~F~~sr~ai~~aI~ql~e~ia~rvVF~Dlr~~--- 904 (1075)
-+||-.-..+-.+.|...+.+ ++. ..+..+-++-..-++-+.-++.+++ |.|++.+
T Consensus 502 ~A~y~~~~~sntfeLitseye~------d~~---------~~lgkTvDgfi~I~~~s~~~l~~~i-----~~d~~pa~~~ 561 (742)
T COG5173 502 IAQYITSLPSNTFELITSEYEN------DEV---------KELGKTVDGFIDILKASNTFLAEFI-----IYDCQPAIDK 561 (742)
T ss_pred HHHHHHhcchhhhhhhhHHHHH------HHH---------HHhcccchhHHHHHhhhhHHHHHHH-----HHhhhhhHHH
Confidence 234333333322222111100 000 0122222222333344445556654 6688765
Q ss_pred -hhhhccCCccchhhHHHhhHhHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCccChhhH--HHHHHH
Q 042701 905 -FIDNLYKPSVSKSRLESLIEPLDVELSKLCDVIVEPLRDRVVTGLLQASLDGLLRVLLNGGPFRVFFPSDA--KQLEED 981 (1075)
Q Consensus 905 -~~d~LY~g~Va~sRI~PlL~~Ld~~L~~l~s~l~d~vr~rVvkeL~KAs~e~~l~VLLaGGpsR~Fs~~D~--~ilEeD 981 (1075)
|-++-|.|+++.--..-+=+||-.+-.++++ -++..++-++--+++=++++.| |-.|++-.+++ +-|..|
T Consensus 562 iF~~~Wy~gS~~k~IvdTl~dyl~D~~~~M~~----~lFv~Fi~e~s~~~vi~yl~~l---~~k~a~~~~~na~~~lksD 634 (742)
T COG5173 562 IFTDEWYGGSVTKVIVDTLQDYLSDYQNTMSE----YLFVTFIHELSMSIVIAYLKQL---GRKRASIAEENASRTLKSD 634 (742)
T ss_pred hcCccccccchHHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHH---hhhhhhhcchhHHHHHHHH
Confidence 4567888888776555555666555555555 4555667777777777777765 45788888887 458999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHhhcccchHH-HHHHHHhcccccccCCCCCCCCCcccchhhhccCCChhH
Q 042701 982 LEILKEFFISGGDGLPRGVVENQVARARHVVKLHGYETRE-LIDDLRSGSSQDMLGTRGKLGADSETLLRILCHRSDSEA 1060 (1075)
Q Consensus 982 L~~LKdfF~A~GeGLp~e~Vek~~~~l~~VL~Ly~q~Td~-LIe~f~~~~~~~~~g~~~k~~~d~nTILRVLchR~D~~A 1060 (1075)
+..+-+.|-.-|+| +-+.....++..++.+|....+. .|+.+...-. .+- ..-..-|--||-.|.|-+-
T Consensus 635 ~~~~y~~f~~y~d~---e~~k~tl~pI~k~~~~m~~~~~d~~~~~~~~lke--iYw-----D~~~sli~~Ilk~R~Dl~~ 704 (742)
T COG5173 635 HTKLYEMFSGYGDP---EDVKTTLSPILKIIPLMDTRNDDLFIVEVKSLKE--IYW-----DIKKSLIKTILKKRQDLTE 704 (742)
T ss_pred HHHHHHHHHhhCCH---HHHHHHHHHHHHHHcccccCCchHHHHHHHHHHH--Hhc-----cchHHHHHHHHHhhhhhHH
Confidence 99999999877764 34444566788888888665544 4444433321 110 0113445556666666444
Q ss_pred h
Q 042701 1061 S 1061 (1075)
Q Consensus 1061 s 1061 (1075)
|
T Consensus 705 s 705 (742)
T COG5173 705 S 705 (742)
T ss_pred H
Confidence 3
No 13
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=69.01 E-value=26 Score=41.61 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=75.3
Q ss_pred cCcccc-cccCCchhHHHHHHHHHHHHhhHHHHHHhhh-ccC-hhhhhccCchhHHHHHHHHHhhhhccc----chhhhh
Q 042701 596 IFMPIL-SKRHPQATIVSASLLHKLYGNKLKPFSDGAE-HLT-EDVASVFPAADSLEQYIISLITSTCEE----ETAAVY 668 (1075)
Q Consensus 596 ~fSPiL-~~whp~a~~VAA~tLh~~yg~dLK~~L~~v~-~lt-~d~~~vl~aAD~LEk~L~ql~~sv~~~----dg~k~~ 668 (1075)
.|..+| ..|+ +...=+.....+=-.||...|++.. +++ .-....++..-.+|++|..-+...... ......
T Consensus 263 ~~~~iFP~~W~--v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~e~ 340 (383)
T PF04100_consen 263 KFANIFPPSWR--VPERLCVEFCEITRKDLSEILSKRKSELDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKKKEM 340 (383)
T ss_pred hccccCCCcCc--HHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 355554 3476 6666666777777888999996643 233 233667788888999988775221000 000000
Q ss_pred hccCCCc--cchhhHHHHHHHHHHHhhhhHHHHHHHHHhcCcc
Q 042701 669 CRKLMPY--QIESISGTLVLRWINSQLGRILSWVERAIQQERW 709 (1075)
Q Consensus 669 vr~~~Pf--elE~~f~~~V~~Wi~e~~~k~~ewV~rAie~E~W 709 (1075)
-..-.+| -|.+.|.||+.-||+.++..+.+.+.+.++.++|
T Consensus 341 ~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~~~w 383 (383)
T PF04100_consen 341 KEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISEEKW 383 (383)
T ss_pred cccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 0000144 4999999999999999999999999999999999
No 14
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=66.79 E-value=5.6 Score=50.07 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=15.9
Q ss_pred CcccchhhhHHHHHHHHHHHHHHh
Q 042701 869 TKNDTFDGSRKDINAAIDRICEFT 892 (1075)
Q Consensus 869 ~ls~~F~~sr~ai~~aI~ql~e~i 892 (1075)
+...-.+++|..-+.|+.|+.+.+
T Consensus 1069 ~r~g~l~rsrsrh~~a~gqlm~~~ 1092 (1102)
T KOG1924|consen 1069 GRRGCLDRSRSRHQNALGQLMDLT 1092 (1102)
T ss_pred ccccchhhhhHhhhhhhhHHHHHH
Confidence 345556677777777777766655
No 15
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=61.86 E-value=8.4 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=15.2
Q ss_pred HHhHHHHHHHHHhccccccccCCCC
Q 042701 14 RRDRRILLDFILSGSLIKKVIMPPG 38 (1075)
Q Consensus 14 r~drr~ll~~~ls~~~~~~~~~~~~ 38 (1075)
|+-==+|.+=-.|-=+.++--|-|-
T Consensus 421 rpqYykLIEecISqIvlHr~~~DPd 445 (1102)
T KOG1924|consen 421 RPQYYKLIEECISQIVLHRTGMDPD 445 (1102)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3444567777777666666555554
No 16
>PF14923 CCDC142: Coiled-coil protein 142
Probab=58.56 E-value=26 Score=42.37 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=86.1
Q ss_pred hccCCccchhhHHHhhHhHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCccChhhHHHHHHHHHHHHH
Q 042701 908 NLYKPSVSKSRLESLIEPLDVELSKLCDVIVEPLRDRVVTGLLQASLDGLLRVLLNGGPFRVFFPSDAKQLEEDLEILKE 987 (1075)
Q Consensus 908 ~LY~g~Va~sRI~PlL~~Ld~~L~~l~s~l~d~vr~rVvkeL~KAs~e~~l~VLLaGGpsR~Fs~~D~~ilEeDL~~LKd 987 (1075)
+.|++.+.+..+.|+++. ...+.++++--+++.+++|++++++.-|+--+. -||-.-.--+..||..+++
T Consensus 275 S~Yv~~~v~~vl~PVl~g--------~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kI--KFS~~GAlQL~~DF~~Vr~ 344 (450)
T PF14923_consen 275 SEYVEYVVETVLEPVLQG--------VQGLPPEAQIPALSQALTAMLEAWLDHILMHKI--KFSLQGALQLRQDFGYVRD 344 (450)
T ss_pred cHHHHHHHHHHHHHHHHH--------hcCCChHHHHHHHHHHHHHHHHHHHHHHHHccc--eeeHHHHHHHHHHHHHHHH
Confidence 567777777777777766 345678888889999999999999998886432 4777777789999999999
Q ss_pred hhhcCCCCCcHHHHHHH-----HHHHHHHHhhcccchHHHHHHHHh
Q 042701 988 FFISGGDGLPRGVVENQ-----VARARHVVKLHGYETRELIDDLRS 1028 (1075)
Q Consensus 988 fF~A~GeGLp~e~Vek~-----~~~l~~VL~Ly~q~Td~LIe~f~~ 1028 (1075)
+-..+-.||..++-++- .+.+.+|+.+.-+....-|....+
T Consensus 345 wl~~e~~~Ls~e~rq~Ll~l~v~r~~dgv~~lLlqqP~~~~~~~~~ 390 (450)
T PF14923_consen 345 WLESECSGLSPELRQTLLSLEVFRRCDGVGLLLLQQPGPKISMTRR 390 (450)
T ss_pred HHHhhhccCCHHHHHHHhccHHHHHHHHHHHHHhcCCCCccccccC
Confidence 99999999998888876 688888888655544444554443
No 17
>PRK09752 adhesin; Provisional
Probab=57.51 E-value=12 Score=49.41 Aligned_cols=10 Identities=10% Similarity=0.567 Sum_probs=7.0
Q ss_pred cceEEEeeCC
Q 042701 89 ADEFFLVTNP 98 (1075)
Q Consensus 89 ~~~~~l~~~p 98 (1075)
.+.+||-+.-
T Consensus 908 ~~nWYLrS~~ 917 (1250)
T PRK09752 908 NNDWYLRSQE 917 (1250)
T ss_pred CCCceeeecc
Confidence 4668888764
No 18
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.21 E-value=4.1e+02 Score=33.39 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=72.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCCCCchHHH-HHHHHHHHHHHH-----------------HHHHHHH-------hh
Q 042701 715 QQRHASSIVEVYRIVEETVDQFFALQVPMRSTEL-NALFRGIDNAFQ-----------------VYANHVT-------DK 769 (1075)
Q Consensus 715 ~e~hSsSVVDIFrii~Etld~ff~L~wp~~~~la-t~L~kgI~~~lq-----------------~Y~~~V~-------~~ 769 (1075)
+..-|.+.|=-||.=.+++.+..+-+.|.-.++- +.++..++.++. +|+-.+. ..
T Consensus 350 ~tC~s~~avt~~Rah~~~~sF~kkwNl~VYFqlrfqeiag~ldaaLtp~~~~d~l~d~~~Est~~l~l~as~a~~ealrr 429 (705)
T KOG2307|consen 350 HTCRSMLAVTKFRAHAICVSFMKKWNLPVYFQLRFQEIAGQLDAALTPEMFADPLTDENRESTPQLHLGASRAIIEALRR 429 (705)
T ss_pred CcCchHHHHHHHHhhhHHHHHHHhcCcceeEeeeHHHHHHHHHHhcCchhhcccccccccccCccchhhHhHHHHHHHHH
Confidence 4566778999999999999999998888777665 777777777665 3322211 13
Q ss_pred cCCCCCCCCCCc-chhhhhhh--hhhhhhH---hhhccCCCcchhhccccccccccccchhhhccHHHHHHHHHHHHHHH
Q 042701 770 LGSKEDLVPPEP-VLTRYRKE--AGIKAFV---KKEILDPRMSEERRSSEINILTTAALCVQLNTLHYAISQLNKLEDSI 843 (1075)
Q Consensus 770 ~g~ke~~iP~~P-~LTR~~ke--s~~~~~~---KKa~~e~~~p~e~~~~~~~~~f~p~lCVrLNNLeyi~~qLd~LEk~I 843 (1075)
|-+.+.|+|+.- .+=|.+-. .+...|. ++...++. +.++--++-.+|+--++.-...++..+=+.|
T Consensus 430 cWsddvylp~~vdKl~rltlQlllRysrwisaitns~gs~~--------skp~trtqlvyv~hdd~~llqevl~elle~I 501 (705)
T KOG2307|consen 430 CWSDDVYLPPIVDKLWRLTLQLLLRYSRWISAITNSFGSEK--------SKPATRTQLVYVRHDDGNLLQEVLPELLESI 501 (705)
T ss_pred HccccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCC--------CCCcchhheeeeecccchHHHHHhHHHHHHH
Confidence 556666666542 11111100 0111132 22111111 0122334456777677777778888888888
Q ss_pred Hhhhc
Q 042701 844 LERWT 848 (1075)
Q Consensus 844 ~~~~~ 848 (1075)
.+++.
T Consensus 502 ~~kl~ 506 (705)
T KOG2307|consen 502 WGKLH 506 (705)
T ss_pred Hhhcc
Confidence 77663
No 19
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=47.61 E-value=1.1e+02 Score=34.14 Aligned_cols=160 Identities=18% Similarity=0.235 Sum_probs=87.1
Q ss_pred cccchhhhccHHHHHHHHHHHHHHHHhhhccCCCchhhhhhHHhhhhcCCCcccchhhhHHHHHHHHHHHHHHhcccee-
Q 042701 819 TAALCVQLNTLHYAISQLNKLEDSILERWTRKKPHENFLKKLVEEKSKSFTKNDTFDGSRKDINAAIDRICEFTGTKII- 897 (1075)
Q Consensus 819 ~p~lCVrLNNLeyi~~qLd~LEk~I~~~~~~~~ss~~~Lsps~~~~~~~~~ls~~F~~sr~ai~~aI~ql~e~ia~rvV- 897 (1075)
.++=+|..-++-++-.+++.+...+..-..... .+.+...|..+.+++.+--..+...++.+++
T Consensus 4 L~eRiVA~ESl~fLa~~l~~~~p~l~~lLp~~~---------------~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l~ 68 (234)
T PF10474_consen 4 LAERIVAVESLSFLARQLESLRPYLESLLPPNK---------------RDFLEQFYSQTVSAVPDLREPIYKCVASRLLD 68 (234)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445678888999999999998777754332211 1123455555555554444444444444332
Q ss_pred -----------eeccchhhhhhccCCccchhhHHHhhHhHHhHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHh
Q 042701 898 -----------FWDLREPFIDNLYKPSVSKSRLESLIEPLDVELSKLCDVIVE-----PLRDRVVTGLLQASLDGLLRVL 961 (1075)
Q Consensus 898 -----------F~Dlr~~~~d~LY~g~Va~sRI~PlL~~Ld~~L~~l~s~l~d-----~vr~rVvkeL~KAs~e~~l~VL 961 (1075)
-||.++ .+.-.+ +-.+.|.+.+..+...|.+ ++.+-+.+.+|..++..+..+|
T Consensus 69 ~~~i~~~Ia~vKWdvke-------v~~qhs----~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~L 137 (234)
T PF10474_consen 69 LEQILNSIANVKWDVKE-------VMSQHS----SYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETL 137 (234)
T ss_pred HHHHHHHHHHcCCCCCC-------CCCccC----HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 244443 222223 3444444445555544422 2234567777777777776676
Q ss_pred cCCCCC-CccChhhHHHHHHHHHHHHHhhhc-CCCC-Cc-HHHHHHH
Q 042701 962 LNGGPF-RVFFPSDAKQLEEDLEILKEFFIS-GGDG-LP-RGVVENQ 1004 (1075)
Q Consensus 962 LaGGps-R~Fs~~D~~ilEeDL~~LKdfF~A-~GeG-Lp-~e~Vek~ 1004 (1075)
+.|-.. |--|...-+.|.-||..+..-+-. .|-. .| .++||..
T Consensus 138 veg~s~vkKCs~eGRalM~lD~q~~~~~le~l~~~~~~p~~~~Ve~Y 184 (234)
T PF10474_consen 138 VEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLSGIRPIPNREYVENY 184 (234)
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 654322 445566667777788887777743 2222 33 3555544
No 20
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=44.61 E-value=1.9e+02 Score=35.43 Aligned_cols=168 Identities=13% Similarity=0.133 Sum_probs=85.5
Q ss_pred CCchHHHHHHHHHHHHHHhhcccC-------cccccccCCchhHHHHHHHHHHHHhhHHHHHHhhhccC-hhhhhccCch
Q 042701 574 IHEHPLALLAEETKKLLKRDSSIF-------MPILSKRHPQATIVSASLLHKLYGNKLKPFSDGAEHLT-EDVASVFPAA 645 (1075)
Q Consensus 574 ~~~~~L~~LA~di~~La~~Ek~~f-------SPiL~~whp~a~~VAA~tLh~~yg~dLK~~L~~v~~lt-~d~~~vl~aA 645 (1075)
.....|..+.+|+..+...-.+.+ .|+.+.++|.||++.-+. -....++..+..++.+- +..... +.+
T Consensus 354 ~~~~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag~i~w~r---~L~~ri~~~~~~~~~~~g~~~~~~-~~~ 429 (579)
T PF08385_consen 354 KYEQLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAGAIIWAR---QLERRIKEPMQRLKSLLGPDWLDS-PEG 429 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHHHHHHHH---HHHHHHhHHHHHHHHhccchhhcc-hhH
Confidence 344667778899988876533333 466666777666654321 12223444444443322 110000 111
Q ss_pred hHHHHHHHHHhhhhcccchhhhhhccCCCccchhhHHHHHHHHHHHhhhhHHHHHHHHHh-cCccccCCCCCCCCCcHHH
Q 042701 646 DSLEQYIISLITSTCEEETAAVYCRKLMPYQIESISGTLVLRWINSQLGRILSWVERAIQ-QERWDPISPQQRHASSIVE 724 (1075)
Q Consensus 646 D~LEk~L~ql~~sv~~~dg~k~~vr~~~PfelE~~f~~~V~~Wi~e~~~k~~ewV~rAie-~E~WeP~S~~e~hSsSVVD 724 (1075)
.. +.+.|+.+ .+ .+..+.......|+++........+++.+= ...=....=...|.+.++.
T Consensus 430 ~~----~~~~~~~l---------~~-----~l~~~e~~~~~~W~~~i~~~~~~~L~~~ll~~~~~~~~~l~VNfd~~l~~ 491 (579)
T PF08385_consen 430 KE----LKQKYNEL---------LK-----KLDEYEKEIFEEWLNEIESNINSSLSQPLLKRRSDENGRLVVNFDPELLT 491 (579)
T ss_pred HH----HHHHHHHH---------HH-----HHHHHHHHHHHHHHHHHHHHHhhccccceeeeccCCCceEEEeCCHHHHH
Confidence 11 12222221 11 245556677889999888887655555554 1111111122568888888
Q ss_pred HHHHHHHHHHHHHcCCCCCchHHH---------HHHHHHHHHHHHHHHHHHH
Q 042701 725 VYRIVEETVDQFFALQVPMRSTEL---------NALFRGIDNAFQVYANHVT 767 (1075)
Q Consensus 725 IFrii~Etld~ff~L~wp~~~~la---------t~L~kgI~~~lq~Y~~~V~ 767 (1075)
+|+=++. |..|.++.|.... ...+..+...++.|-..+.
T Consensus 492 l~rEvr~----l~~lg~~iP~~~~~~~~~~~~l~~~~~~L~~~~~~yn~i~~ 539 (579)
T PF08385_consen 492 LLREVRY----LQSLGFEIPEEILELYEQAEKLYPYAESLQEIVRFYNSIIE 539 (579)
T ss_pred HHHHHHH----HHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877664 3444444444333 3455556666666666553
No 21
>PRK09752 adhesin; Provisional
Probab=43.25 E-value=30 Score=46.05 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=6.5
Q ss_pred CccccCCCCccc
Q 042701 38 GAITLDDVDLDQ 49 (1075)
Q Consensus 38 ~~~~l~~~d~d~ 49 (1075)
||.+.+.|.+=+
T Consensus 862 GA~T~~GI~VV~ 873 (1250)
T PRK09752 862 GEPTSTGIKVVD 873 (1250)
T ss_pred chhccCCcEEEE
Confidence 366666655433
No 22
>PHA01732 proline-rich protein
Probab=42.04 E-value=32 Score=32.73 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCCC
Q 042701 102 GSPPRRAPPPITVLTPPPVPVTVPP 126 (1075)
Q Consensus 102 ~~~p~~~~p~~~~~~~~~~~~~~~~ 126 (1075)
|.|+...||+.++.+|++.+.+.++
T Consensus 5 gAP~~p~ppPpPpP~P~PpPpPppp 29 (94)
T PHA01732 5 RAPKPPEPPAPLPPAPVPPPPPAPP 29 (94)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 3444434443333333333333333
No 23
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=41.90 E-value=26 Score=36.87 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=59.3
Q ss_pred hhhHHHhhHhHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCccChhhHHHHHHHHHHHHHhhhcCCCC
Q 042701 916 KSRLESLIEPLDVELSKLCDVIVEPLRDRVVTGLLQASLDGLLRVLLNGGPFRVFFPSDAKQLEEDLEILKEFFISGGDG 995 (1075)
Q Consensus 916 ~sRI~PlL~~Ld~~L~~l~s~l~d~vr~rVvkeL~KAs~e~~l~VLLaGGpsR~Fs~~D~~ilEeDL~~LKdfF~A~GeG 995 (1075)
.+|+..=|+-|..-|-++++++--.+++.=|+-+|..+++. +-+=|.|...|--||.|.|.-
T Consensus 70 ht~VlEkLPdL~r~LPTlASvLrrKvkN~~Ir~vwesvLee------------------~GLqE~dv~aLCtFfiahgnk 131 (196)
T PF15080_consen 70 HTRVLEKLPDLVRGLPTLASVLRRKVKNKRIRVVWESVLEE------------------CGLQEGDVTALCTFFIAHGNK 131 (196)
T ss_pred HHHHHHHhhHHHhCcchHHHHHHHHhhchHHHHHHHHHHHH------------------cCCCcccHHHHHHHHHHhcch
Confidence 55667778889999999999999999999999999998863 334467889999999999973
Q ss_pred ---CcHHHHHHHHHHHHHHHh
Q 042701 996 ---LPRGVVENQVARARHVVK 1013 (1075)
Q Consensus 996 ---Lp~e~Vek~~~~l~~VL~ 1013 (1075)
.+.++-.-.+..+.-.+.
T Consensus 132 aehy~a~~R~~yi~dv~~mIt 152 (196)
T PF15080_consen 132 AEHYAAKVRQMYIRDVTFMIT 152 (196)
T ss_pred HhHhHHHHHHHHHhhHHHHHH
Confidence 244443333333333333
No 24
>PF12854 PPR_1: PPR repeat
Probab=41.08 E-value=31 Score=26.66 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=26.3
Q ss_pred CCCcccHHHHHHHHhhhccccCCccchHHHHHHHHHHh
Q 042701 404 DGYHLNVRLYEKLLLSVFDVLDEGKLTEEVEEILELLK 441 (1075)
Q Consensus 404 dgyplNv~LY~~LL~~~FD~~de~~v~eEvdElleliK 441 (1075)
.|+++|+..|..|+.+.-. +|.+ ||+-++++-|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck---~G~~-~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCK---AGRV-DEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHH---CCCH-HHHHHHHHhCc
Confidence 4899999999999998765 3444 77877777653
No 25
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=38.69 E-value=74 Score=39.26 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=14.4
Q ss_pred cccHHHHHHHhhh---------hhhhhhHHH
Q 042701 256 LVGLLETMRVQME---------ISEAMDIRT 277 (1075)
Q Consensus 256 ~~~~~e~mR~qm~---------vse~~d~r~ 277 (1075)
|+++--.+|.||+ |+.--|+|+
T Consensus 381 LAg~YktiKKqlenhv~afntNitdmLdSRl 411 (574)
T PF07462_consen 381 LAGMYKTIKKQLENHVNAFNTNITDMLDSRL 411 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4566677777876 555566664
No 26
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=38.53 E-value=2.2e+02 Score=28.60 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=60.0
Q ss_pred CCccchhhHHHhh-HhHHhHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCccChhhHHHHHHHHHHHH
Q 042701 911 KPSVSKSRLESLI-EPLDVELSKLCD---VIVEPLRDRVVTGLLQASLDGLLRVLLNGGPFRVFFPSDAKQLEEDLEILK 986 (1075)
Q Consensus 911 ~g~Va~sRI~PlL-~~Ld~~L~~l~s---~l~d~vr~rVvkeL~KAs~e~~l~VLLaGGpsR~Fs~~D~~ilEeDL~~LK 986 (1075)
.+++++..+..++ +.+-.++..+|+ -|+...|..+|+|+=.. +.-|..| |+|--.+.=|++|...|++=.-.+|
T Consensus 27 ~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Dai-v~DLeEV-La~V~~~~aT~eQ~~Fi~Ef~~LiK 104 (113)
T PF12290_consen 27 SGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADAI-VYDLEEV-LASVWNQKATNEQIAFIEEFIGLIK 104 (113)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH-HHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3455666666666 668888888887 57788999999998544 4334444 5666678889999999999999999
Q ss_pred Hhhhc
Q 042701 987 EFFIS 991 (1075)
Q Consensus 987 dfF~A 991 (1075)
++|-.
T Consensus 105 NLFD~ 109 (113)
T PF12290_consen 105 NLFDS 109 (113)
T ss_pred HhHHH
Confidence 99964
No 27
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=36.88 E-value=39 Score=46.87 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=9.2
Q ss_pred CCccccCCCCcccc
Q 042701 37 PGAITLDDVDLDQV 50 (1075)
Q Consensus 37 ~~~~~l~~~d~d~~ 50 (1075)
.||-+.+.|-+=+|
T Consensus 1615 ~GA~T~nGI~vI~V 1628 (2039)
T PRK15319 1615 DGAQTTNGIEVVDV 1628 (2039)
T ss_pred CCcccCCCcEEEEE
Confidence 46777777766555
No 28
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=35.32 E-value=26 Score=40.01 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=39.0
Q ss_pred hhhcCCccccCCC-ChhhHHHHHHHHHhhhccC--------CCCCccccchhHHHHHHHHHHhhhhcCCCCCCCCCCccc
Q 042701 331 GLINHPVVGFGES-GRRVNELSILLAKIEESES--------LPSSTGELQRTECLRSLREIAIPLAERPARGDLTGEVCH 401 (1075)
Q Consensus 331 gLl~hp~~~~~~~-~~~~~~lr~~~~~~~~~~~--------~~~~~~~~~~~e~m~~l~~~~~~La~r~~~~~~~~e~ch 401 (1075)
-|++||---++.. ...-.++.+.|.++-..+. .+--+++...-+.+..+-+.+..+. +=+-.=|+||
T Consensus 103 ~lv~HpG~~~~~~~e~~l~~i~~~Ln~~~~~~~v~i~~e~~agegs~~g~~F~~L~eii~~~~~~~----~igvCiDtcH 178 (280)
T COG0648 103 LLVFHPGSYLGQGKEEGLNRIAEALNELLEEEGVIILLENTAGEGSGKGTQFGELAEIIDLIEEKE----RIGVCIDTCH 178 (280)
T ss_pred EEEECCccccCCCHHHHHHHHHHHHHHHhhccCCeEEEEEeccccCccccchhhHHHHHHhhcccC----ceEEEEEchh
Confidence 3788997776653 2334555555544443211 1112223333455555555444433 1111249999
Q ss_pred -ccCCCccc
Q 042701 402 -WADGYHLN 409 (1075)
Q Consensus 402 -WadgyplN 409 (1075)
||.||.++
T Consensus 179 ~~Aagy~~~ 187 (280)
T COG0648 179 AFAAGYDII 187 (280)
T ss_pred hhhccCCcC
Confidence 99999876
No 29
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.12 E-value=1.5e+02 Score=38.25 Aligned_cols=99 Identities=22% Similarity=0.369 Sum_probs=64.6
Q ss_pred chhhhccH----HHHHHHHHHHHHHHHhhhccCCCchhhhhhHHhhhhcCCCcccchhhhHHHHHHHH-HHHHHHhccce
Q 042701 822 LCVQLNTL----HYAISQLNKLEDSILERWTRKKPHENFLKKLVEEKSKSFTKNDTFDGSRKDINAAI-DRICEFTGTKI 896 (1075)
Q Consensus 822 lCVrLNNL----eyi~~qLd~LEk~I~~~~~~~~ss~~~Lsps~~~~~~~~~ls~~F~~sr~ai~~aI-~ql~e~ia~rv 896 (1075)
--|.++++ +||+.||+++.+.+...+.+ -.|......++.-+ .+++.+
T Consensus 691 ~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~----------------------Y~f~kVv~~lq~F~~~~lSa~----- 743 (937)
T KOG0433|consen 691 VKFPLKDLRYIDQYMLQQLDAIVKRIIELYND----------------------YKFRKVVNDLQQFLQRNLSAF----- 743 (937)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHhhHH-----
Confidence 34566666 68899999999888765521 22333322222221 112221
Q ss_pred eeeccchhhhhhccCCccchhhHHHhhHhHHhHHHHHHHhhhhhhHHHHHHHHHHH
Q 042701 897 IFWDLREPFIDNLYKPSVSKSRLESLIEPLDVELSKLCDVIVEPLRDRVVTGLLQA 952 (1075)
Q Consensus 897 VF~Dlr~~~~d~LY~g~Va~sRI~PlL~~Ld~~L~~l~s~l~d~vr~rVvkeL~KA 952 (1075)
+.|. .=|.||-+.+.+-.-+..-..|-+.|..++.++..-+ +..+.|||+-
T Consensus 744 -Yfdi---vKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIl-P~LaeEvwq~ 794 (937)
T KOG0433|consen 744 -YFDI---VKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPIL-PHLAEEVWQH 794 (937)
T ss_pred -HHHH---HhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHh
Confidence 1111 1278999999888778888888899999998887665 7888999987
No 30
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=29.52 E-value=23 Score=36.39 Aligned_cols=25 Identities=36% Similarity=0.736 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHhhhccccccchhH
Q 042701 429 LTEEVEEILELLKSTWRVLGITETM 453 (1075)
Q Consensus 429 v~eEvdElleliK~TW~~LGI~q~~ 453 (1075)
+..|++|+|.|--+.|.-||+|+.|
T Consensus 91 Ln~EAe~~L~lal~LWdSL~Lne~I 115 (148)
T PF09201_consen 91 LNQEAEQTLDLALKLWDSLGLNESI 115 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhcCccHHH
Confidence 6689999999999999999999988
No 31
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=29.37 E-value=1.3e+03 Score=29.59 Aligned_cols=124 Identities=21% Similarity=0.192 Sum_probs=92.8
Q ss_pred hhHHHhhHhHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCccChhhHHHHHHHHHHHHHhhhcCCCCC
Q 042701 917 SRLESLIEPLDVELSKLCDVIVEPLRDRVVTGLLQASLDGLLRVLLNGGPFRVFFPSDAKQLEEDLEILKEFFISGGDGL 996 (1075)
Q Consensus 917 sRI~PlL~~Ld~~L~~l~s~l~d~vr~rVvkeL~KAs~e~~l~VLLaGGpsR~Fs~~D~~ilEeDL~~LKdfF~A~GeGL 996 (1075)
.....+..+|..+...+.+.+.....+.++.+|-...+..++.-+- .-.++..-.-++-.|+....+|+..= |.
T Consensus 578 ~ac~~vv~~L~~~~~~~~~~l~~~nl~~f~~elg~~l~~~l~~h~k----k~~vs~~Gg~~l~~Dl~~Y~~~~~~~--~~ 651 (710)
T PF07393_consen 578 PACQEVVEFLERHCSLLKGSLDGSNLDVFLQELGERLHRLLLKHLK----KFTVSSTGGLQLIKDLNEYQDFIRSW--GI 651 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHH----hCccCchhHHHHHHHHHHHHHHHHHc--CC
Confidence 3466788999999999999999988888888887777766665543 12333433457888999988888654 34
Q ss_pred cHHHHHHHHHHHHHHHhhcccchHHHHHHHHhcccccccCCCCCCCCCcccchhhhccCCC
Q 042701 997 PRGVVENQVARARHVVKLHGYETRELIDDLRSGSSQDMLGTRGKLGADSETLLRILCHRSD 1057 (1075)
Q Consensus 997 p~e~Vek~~~~l~~VL~Ly~q~Td~LIe~f~~~~~~~~~g~~~k~~~d~nTILRVLchR~D 1057 (1075)
| .|....+.|+.+-+||-.+.|.|-+.+..... ...+++.|...+--|.|
T Consensus 652 ~--~v~~~F~~L~~l~nl~~v~~~~l~~~~~~~~~---------~~~~~~~i~~fi~~R~D 701 (710)
T PF07393_consen 652 P--SVDEKFEALKELGNLFIVDPENLKELCREGQL---------GRFSPEEIYEFIQRRSD 701 (710)
T ss_pred c--hHHHHHHHHHHHHhheeecHHHHHHHHhhccc---------cCCCHHHHHHHHHHhhh
Confidence 4 47778899999999999999988875533221 13678999999999988
No 32
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.23 E-value=6.6e+02 Score=32.54 Aligned_cols=205 Identities=13% Similarity=0.165 Sum_probs=104.8
Q ss_pred chhhhccHHHHHHHHHHHHHHHHhhhccCCCchh---hhhhHHhhhhcCCCcccchhhhHHHHHHHHHHHHHHhc-cce-
Q 042701 822 LCVQLNTLHYAISQLNKLEDSILERWTRKKPHEN---FLKKLVEEKSKSFTKNDTFDGSRKDINAAIDRICEFTG-TKI- 896 (1075)
Q Consensus 822 lCVrLNNLeyi~~qLd~LEk~I~~~~~~~~ss~~---~Lsps~~~~~~~~~ls~~F~~sr~ai~~aI~ql~e~ia-~rv- 896 (1075)
--+.|||.+-.-.-+..|-+.|...|..+-+... .++.++. +...+...|.. -++.|+.++-..+- -|+
T Consensus 544 fl~~LNn~~ls~eyi~~L~~~le~~~~~vf~~~~d~~~l~~~l~---~l~~l~~~f~~---L~k~g~~~Lf~~~lkpRi~ 617 (773)
T KOG0412|consen 544 FLTALNNADLSKEYIHTLKKTLESDCTEVFPQNFDRAKLKSCLS---NLEALSLKFKD---LLKWGMEQLFSTVLKPRIR 617 (773)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHhHHhHh
Confidence 4578999986666666666666666654433211 1221111 11122222221 23333333222111 110
Q ss_pred ----eeeccchhhhhhccCC-ccchhhHHHhhHhHHhHHHHHHHhhhhhh----HH--------HHHHHHHHHHHHHHHH
Q 042701 897 ----IFWDLREPFIDNLYKP-SVSKSRLESLIEPLDVELSKLCDVIVEPL----RD--------RVVTGLLQASLDGLLR 959 (1075)
Q Consensus 897 ----VF~Dlr~~~~d~LY~g-~Va~sRI~PlL~~Ld~~L~~l~s~l~d~v----r~--------rVvkeL~KAs~e~~l~ 959 (1075)
-|....+.+-..=|.. ...+.-+..++..+++.+..+-..++... +. ++=..+||..|
T Consensus 618 ~~id~f~~is~~ls~edy~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k~~F----- 692 (773)
T KOG0412|consen 618 PWIDTFVNISYNLSEEDYAAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQIIWKIQF----- 692 (773)
T ss_pred hhhhhhhhhhccccHHHHhhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHHHhHH-----
Confidence 0222222222222332 23344566666666666655544443222 22 22233444433
Q ss_pred HhcCCCCCCccChhhHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHhhcccchHHHHHHHHhcccccccCCCC
Q 042701 960 VLLNGGPFRVFFPSDAKQLEEDLEILKEFFISGGDGLPRGVVENQVARARHVVKLHGYETRELIDDLRSGSSQDMLGTRG 1039 (1075)
Q Consensus 960 VLLaGGpsR~Fs~~D~~ilEeDL~~LKdfF~A~GeGLp~e~Vek~~~~l~~VL~Ly~q~Td~LIe~f~~~~~~~~~g~~~ 1039 (1075)
++--.-.++.+++.|-.||+.+- ..++-||- .++.+++.|..++++.=+=+|..-. .|+-
T Consensus 693 -----------NrlG~lqLDre~r~lis~lt~~t---~~~lRdKf-~RLtQIatLLnle~~se~le~w~~~----~g~~- 752 (773)
T KOG0412|consen 693 -----------NRLGGLQLDRELRALISYLTGVT---QWNLRDKF-ARLTQIATLLNLEKDSEILEYWGPN----SGPL- 752 (773)
T ss_pred -----------HhhcchHhhHHHHHHHHHhhccc---chhHHHHH-HHHHHHHHHHcccccchHHHhcCCC----CCCc-
Confidence 23333468999999999998432 45666664 6889999999988887666564332 1110
Q ss_pred CCCCCcccchhhhccCCC
Q 042701 1040 KLGADSETLLRILCHRSD 1057 (1075)
Q Consensus 1040 k~~~d~nTILRVLchR~D 1057 (1075)
-=.-+|+-+-+||-.|.|
T Consensus 753 twrLt~~EVr~vl~lr~d 770 (773)
T KOG0412|consen 753 TWRLTPAEVRKVLALRID 770 (773)
T ss_pred eEEeCHHHHHHHHHhhcc
Confidence 001467888889998887
No 33
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=23.31 E-value=5.8e+02 Score=27.31 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=47.3
Q ss_pred HHHhhhhhccccccccccHhhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhcCCccccCCCChhhHHHHHHH
Q 042701 282 LNALTGKVGKRMDTLLIPLELLCCISRTEFSDKNTSLVENWMVLNMLEEGLINHPVVGFGESGRRVNELSILL 354 (1075)
Q Consensus 282 ~~~~~gq~g~r~~~~~lpLeLL~~~~~sdF~d~~ey~~Wq~rql~~LE~gLl~hp~~~~~~~~~~~~~lr~~~ 354 (1075)
.....+-+.+|.|+++=||+-....|..+=+-+||.++=|..+-.+|.+-.-+.-.+|-...+. ..+.+.+
T Consensus 93 ~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~--~~~~~f~ 163 (169)
T PF08623_consen 93 AQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSP--NKWNEFV 163 (169)
T ss_dssp HHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH---HHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCH--HHHHHHH
Confidence 4455677888899999999988889999999999999999999888887776654555433333 3444444
No 34
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=22.29 E-value=71 Score=42.47 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=19.6
Q ss_pred hHHHHHHHHhHHHHHHHhhhhhhhhccCCcch
Q 042701 515 FSFLRSFLLPIQKWADKQLGDYHLHFAECPVM 546 (1075)
Q Consensus 515 ~~lL~s~L~si~~W~ekrL~dYH~~F~~~~~~ 546 (1075)
..|...+|.-| |-+-|-|..|--|+..
T Consensus 574 fHLmRE~Lk~~-----KliVD~HVqfRlGniD 600 (2365)
T COG5178 574 FHLMREMLKFI-----KLIVDIHVQFRLGNID 600 (2365)
T ss_pred HHHHHHHHHHH-----HHHHHhhhhhhccCch
Confidence 45556666555 7788999999888874
No 35
>COG3827 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.46 E-value=60 Score=35.65 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=28.4
Q ss_pred ccchhhHHHhh-HhHHhHHHHHHHhhhhhhHHHHHH
Q 042701 913 SVSKSRLESLI-EPLDVELSKLCDVIVEPLRDRVVT 947 (1075)
Q Consensus 913 ~Va~sRI~PlL-~~Ld~~L~~l~s~l~d~vr~rVvk 947 (1075)
.++-..|+|+| +.||+||-+|...|+..--+||++
T Consensus 192 E~a~eMLRPmLqdWLDkNLPtLVErLVrEEIeRv~R 227 (231)
T COG3827 192 EMAAEMLRPMLQDWLDKNLPTLVERLVREEIERVVR 227 (231)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHc
Confidence 34566799999 679999999999888777777765
No 36
>PRK05094 dsDNA-mimic protein; Reviewed
Probab=20.46 E-value=71 Score=31.59 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.2
Q ss_pred CCCChhHHHHHHHHHHHHHhh
Q 042701 194 TGITDDDLRETAYEVLLACAG 214 (1075)
Q Consensus 194 t~ls~ddlRetAYEi~~a~~~ 214 (1075)
.-+|.|++-|+||+||+--+.
T Consensus 5 ~~~s~De~id~AYDiFLE~A~ 25 (107)
T PRK05094 5 NRLTEDETLEQAYDIFLELAA 25 (107)
T ss_pred ccCCHHHHHHHHHHHHHHhhh
Confidence 468999999999999997655
Done!