Query 042701
Match_columns 1075
No_of_seqs 184 out of 227
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 15:01:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042701.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042701hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p06a1 a.204.1.3 (A:1-84) Hyp 28.3 7 0.00051 31.8 0.5 66 375-460 10-78 (84)
2 d1bo9a_ a.65.1.1 (A:) Annexin 27.0 10 0.00076 30.9 1.4 26 1043-1069 20-45 (73)
3 d1nnva_ d.17.7.1 (A:) Hypothet 19.3 24 0.0018 31.2 2.3 20 195-214 7-26 (107)
4 d2es4d1 a.137.15.1 (D:53-332) 19.1 19 0.0014 35.9 1.8 36 34-76 2-38 (280)
5 d1noga_ a.25.2.2 (A:) Hypothet 17.5 1.8E+02 0.013 26.4 8.4 72 923-995 10-88 (149)
6 d1m7va_ d.174.1.1 (A:) Nitric 10.5 1.1E+02 0.0083 31.8 5.0 77 342-443 24-100 (363)
7 d1orja_ a.24.19.1 (A:) Flagell 10.0 63 0.0046 28.6 2.5 43 411-455 83-125 (126)
8 d1nrja_ d.110.4.4 (A:) Srx dom 9.6 46 0.0034 30.7 1.3 26 428-453 97-122 (155)
9 d1cdza_ c.15.1.1 (A:) DNA-repa 8.8 52 0.0038 26.8 1.3 23 46-68 66-88 (96)
10 d3e7ma1 d.174.1.1 (A:77-497) N 8.4 1.6E+02 0.012 31.2 5.1 70 348-442 82-151 (421)
No 1
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=28.31 E-value=7 Score=31.81 Aligned_cols=66 Identities=27% Similarity=0.445 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhhcCCCCCCCCCCcccccCCCcccHHHHHHHHhhhccccCCccchHHHHHHHHHHhhh-ccccccch-h
Q 042701 375 CLRSLREIAIPLAERPARGDLTGEVCHWADGYHLNVRLYEKLLLSVFDVLDEGKLTEEVEEILELLKST-WRVLGITE-T 452 (1075)
Q Consensus 375 ~m~~l~~~~~~La~r~~~~~~~~e~chWadgyplNv~LY~~LL~~~FD~~de~~v~eEvdElleliK~T-W~~LGI~q-~ 452 (1075)
.+|.+..-.|+--+||++- + -.|-|=- -+.||.-+| ||+||+-|.+.|. |--|-=.- .
T Consensus 10 flremhakymkrvsrpgnt--p---rpwfdfs------eerllsrlf---------eemdelreavekedwenlrdelld 69 (84)
T d2p06a1 10 FLREMHAKYMKRVSRPGNT--P---RPWFDFS------EERLLSRLF---------EEMDELREAVEKEDWENLRDELLD 69 (84)
T ss_dssp HHHHHHHHHHHHHTSTTCC--S---CHHHHSC------HHHHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC--C---CCccccc------HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777887542 2 2353211 234444444 6999999999554 98764322 4
Q ss_pred HHHHH-HHH
Q 042701 453 MHYTC-YAL 460 (1075)
Q Consensus 453 ~Hn~c-f~W 460 (1075)
+.|.| |.|
T Consensus 70 vanfcmylw 78 (84)
T d2p06a1 70 VANFCMYLW 78 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 56666 444
No 2
>d1bo9a_ a.65.1.1 (A:) Annexin I {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.96 E-value=10 Score=30.88 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=19.1
Q ss_pred CCcccchhhhccCCChhHhHHHHHHhC
Q 042701 1043 ADSETLLRILCHRSDSEASHFLKKQYK 1069 (1075)
Q Consensus 1043 ~d~nTILRVLchR~D~~AskFLKk~~~ 1069 (1075)
+|..+|.||||+|+...- .-+++.|+
T Consensus 20 tde~~li~Il~~rs~~~l-~~i~~~Y~ 45 (73)
T d1bo9a_ 20 VDEATIIDILTKRNNAQR-QQIKAAYL 45 (73)
T ss_dssp CCSSSHHHHHHHSCSTTH-HHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHH-HHHHHHHH
Confidence 789999999999987543 33555554
No 3
>d1nnva_ d.17.7.1 (A:) Hypothetical protein HI1450 {Haemophilus influenzae [TaxId: 727]}
Probab=19.32 E-value=24 Score=31.19 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.6
Q ss_pred CCChhHHHHHHHHHHHHHhh
Q 042701 195 GITDDDLRETAYEVLLACAG 214 (1075)
Q Consensus 195 ~ls~ddlRetAYEi~~a~~~ 214 (1075)
-+|.||+-++||+||+--+.
T Consensus 7 ~~t~De~id~AYDiFLElA~ 26 (107)
T d1nnva_ 7 KLDPDTAIDIAYDIFLEMAG 26 (107)
T ss_dssp CCCHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHhhh
Confidence 68999999999999997654
No 4
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) {Burkholderia glumae [TaxId: 337]}
Probab=19.09 E-value=19 Score=35.89 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=29.7
Q ss_pred cCCCC-ccccCCCCccccchhHHhhhhhcCCccchhHHHhhhhc
Q 042701 34 IMPPG-AITLDDVDLDQVSVDYVLGCAKKGGMLELSEAIRDFHD 76 (1075)
Q Consensus 34 ~~~~~-~~~l~~~d~d~~s~dy~l~~~~~g~~~~~~~a~~~~~~ 76 (1075)
..|.| +-||++.+.|++.+| .+|.+=++.++|+|||
T Consensus 2 ~~~~~~p~sl~g~~~~~l~~d-------~~g~l~~~~~~r~~fd 38 (280)
T d2es4d1 2 PLPAALPGALAGSHAPRLPLA-------AGGRLARTRAVREFFD 38 (280)
T ss_dssp CCSCSSCTTTTTCCCCCCCBC-------TTSSBCCSTHHHHHHH
T ss_pred CCCcCCCccccCCCCCccccC-------CcCCeeechhhHHHHH
Confidence 45566 669999999988877 4589999999999998
No 5
>d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=17.49 E-value=1.8e+02 Score=26.42 Aligned_cols=72 Identities=17% Similarity=0.061 Sum_probs=45.2
Q ss_pred hHhHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCCccChhhHHHHHHHHHHHHH-------hhhcCCCC
Q 042701 923 IEPLDVELSKLCDVIVEPLRDRVVTGLLQASLDGLLRVLLNGGPFRVFFPSDAKQLEEDLEILKE-------FFISGGDG 995 (1075)
Q Consensus 923 L~~Ld~~L~~l~s~l~d~vr~rVvkeL~KAs~e~~l~VLLaGGpsR~Fs~~D~~ilEeDL~~LKd-------fF~A~GeG 995 (1075)
+|+|+..++.....+.+.--...+..|-+..|+--=.+- .++..+.++..+++.+|++++.+.+ |...||..
T Consensus 10 vDELns~iGla~~~~~~~~~~~~L~~IQ~~Lf~lga~lA-~~~~~~~i~~~~v~~LE~~id~~~~~lp~l~~FiLPGG~~ 88 (149)
T d1noga_ 10 IDELNSFIGYALVLSRWDDIRNDLFRIQNDLFVLGEDVS-TGGKGRTVTREMIDYLEARVKEMKAEIGKIELFVVPGGSV 88 (149)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-TTTSSSCCCHHHHHHHHHHHHHHHHHHCCCCSCBCSCSSH
T ss_pred HHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHhhHHHh-cccccccccHHHHHHHHHHHHHHHhhhccccceeecCCch
Confidence 577777777766555544444556666666664222221 2345578999999999987776654 66677753
No 6
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.50 E-value=1.1e+02 Score=31.82 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=55.2
Q ss_pred CCChhhHHHHHHHHHhhhccCCCCCccccchhHHHHHHHHHHhhhhcCCCCCCCCCCcccccCCCcccHHHHHHHHhhhc
Q 042701 342 ESGRRVNELSILLAKIEESESLPSSTGELQRTECLRSLREIAIPLAERPARGDLTGEVCHWADGYHLNVRLYEKLLLSVF 421 (1075)
Q Consensus 342 ~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~e~m~~l~~~~~~La~r~~~~~~~~e~chWadgyplNv~LY~~LL~~~F 421 (1075)
++..-..|+++|.+.|..+....- | ..-| ....++|||.++-|+ -..+|.. | -||
T Consensus 24 ~~~~~~~Rl~ev~~eI~~tGtY~~-T--------~eEL-~~GAk~AWRNs~RCI--GRl~W~~---L----------~V~ 78 (363)
T d1m7va_ 24 KEEEVKDRLDSIKSEIDRTGSYVH-T--------KEEL-EHGAKMAWRNSNRCI--GRLFWNS---L----------NVI 78 (363)
T ss_dssp CGGGHHHHHHHHHHHHHHTSSCCC-C--------HHHH-HHHHHHHHHTCTTCS--CGGGGGG---C----------EEE
T ss_pred cchhHHHHHHHHHHHHHccCCccC-C--------HHHH-HHHHHHHHccccccc--cccccCc---C----------eee
Confidence 344456899999988888765522 2 1222 245689999988886 5788982 2 489
Q ss_pred cccCCccchHHHHHHHHHHhhh
Q 042701 422 DVLDEGKLTEEVEEILELLKST 443 (1075)
Q Consensus 422 D~~de~~v~eEvdElleliK~T 443 (1075)
|-++-+.--+=.+.|.+.||.-
T Consensus 79 D~R~v~t~~~m~eal~~Hl~~A 100 (363)
T d1m7va_ 79 DRRDVRTKEDVRDALFHHIETA 100 (363)
T ss_dssp ECTTCCSHHHHHHHHHHHHHHH
T ss_pred eccCCCCHHHHHHHHHHHHHHH
Confidence 9999998877778888888753
No 7
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=10.04 E-value=63 Score=28.61 Aligned_cols=43 Identities=21% Similarity=0.418 Sum_probs=27.4
Q ss_pred HHHHHHHhhhccccCCccchHHHHHHHHHHhhhccccccchhHHH
Q 042701 411 RLYEKLLLSVFDVLDEGKLTEEVEEILELLKSTWRVLGITETMHY 455 (1075)
Q Consensus 411 ~LY~~LL~~~FD~~de~~v~eEvdElleliK~TW~~LGI~q~~Hn 455 (1075)
.||.-+...+.......--++||-.+++-|+.+|.- |.+.+||
T Consensus 83 ~lY~~~~~~L~~a~~~~~~i~e~~~il~~l~eaW~~--i~~~~~~ 125 (126)
T d1orja_ 83 TIYTIILNTLVKVDKTKEELQKILEILKDLREAWEE--VKKKVHH 125 (126)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHH--HHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH--HHHHhhC
Confidence 456555555554433334578899999999999964 4444443
No 8
>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.60 E-value=46 Score=30.73 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.5
Q ss_pred cchHHHHHHHHHHhhhccccccchhH
Q 042701 428 KLTEEVEEILELLKSTWRVLGITETM 453 (1075)
Q Consensus 428 ~v~eEvdElleliK~TW~~LGI~q~~ 453 (1075)
++..|++++|.+--+.|.-||+|+.+
T Consensus 97 eLN~EAe~vl~l~~~LWdSL~Ln~~i 122 (155)
T d1nrja_ 97 ELNQETQQTLALVLKLWNSLHLSESI 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCccHHH
Confidence 46789999999999999999999955
No 9
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.84 E-value=52 Score=26.83 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=19.9
Q ss_pred CccccchhHHhhhhhcCCccchh
Q 042701 46 DLDQVSVDYVLGCAKKGGMLELS 68 (1075)
Q Consensus 46 d~d~~s~dy~l~~~~~g~~~~~~ 68 (1075)
+..-|+.++|.||++.|-.++.+
T Consensus 66 ~i~iV~~~Wl~dc~~~~~~lp~~ 88 (96)
T d1cdza_ 66 SLAFVRPRWIYSCNEKQKLLPHQ 88 (96)
T ss_dssp TCEEECTHHHHHHHTTTSCCCGG
T ss_pred CCeEEEEhHHHHHHHcCCcCCch
Confidence 45679999999999999999864
No 10
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.41 E-value=1.6e+02 Score=31.19 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhccCCCCCccccchhHHHHHHHHHHhhhhcCCCCCCCCCCcccccCCCcccHHHHHHHHhhhccccCCc
Q 042701 348 NELSILLAKIEESESLPSSTGELQRTECLRSLREIAIPLAERPARGDLTGEVCHWADGYHLNVRLYEKLLLSVFDVLDEG 427 (1075)
Q Consensus 348 ~~lr~~~~~~~~~~~~~~~~~~~~~~e~m~~l~~~~~~La~r~~~~~~~~e~chWadgyplNv~LY~~LL~~~FD~~de~ 427 (1075)
.|+.+|.+.|..+....--. ..| ....++|||.++-|+ -..+|.. | -|||-++-+
T Consensus 82 ~R~~ev~~eI~~tGtY~~T~---------eEL-~~GAk~AWRNs~RCI--GRi~W~~---L----------~V~D~R~v~ 136 (421)
T d3e7ma1 82 ARLEAVTKEIETTGTYQLTL---------DEL-IFATKMAWRNAPRCI--GRIQWSN---L----------QVFDARNCS 136 (421)
T ss_dssp HHHHHHHHHHHHHSSCCCCH---------HHH-HHHHHHHHHTCTTCT--TGGGTTC---C----------EEEECTTCC
T ss_pred HHHHHHHHHHHccccccCCH---------HHH-HHHHHHHHccccccc--ccccccc---C----------eeeecCCCC
Confidence 68888888887766542211 122 345689999988886 5788983 3 389999999
Q ss_pred cchHHHHHHHHHHhh
Q 042701 428 KLTEEVEEILELLKS 442 (1075)
Q Consensus 428 ~v~eEvdElleliK~ 442 (1075)
.--+=.+.|.+.||.
T Consensus 137 t~~~mfeal~~Hi~~ 151 (421)
T d3e7ma1 137 TAQEMFQHICRHILY 151 (421)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 887777888888875
Done!