Query 042702
Match_columns 115
No_of_seqs 91 out of 93
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 08:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 4E-30 8.7E-35 188.7 3.7 73 11-88 43-116 (118)
2 PF05617 Prolamin_like: Prolam 99.8 3.8E-21 8.3E-26 125.0 4.3 64 15-79 1-70 (70)
3 PLN00214 putative protein; Pro 74.9 2.1 4.6E-05 31.9 1.8 38 24-63 45-86 (115)
4 smart00499 AAI Plant lipid tra 34.0 14 0.00031 22.4 0.1 40 16-60 1-44 (79)
5 cd01960 nsLTP1 nsLTP1: Non-spe 33.0 29 0.00063 23.0 1.5 35 15-54 2-37 (89)
6 cd04660 nsLTP_like nsLTP_like: 32.8 11 0.00025 24.5 -0.5 34 20-57 5-40 (73)
7 cd00010 AAI_LTSS AAI_LTSS: Alp 21.3 66 0.0014 19.6 1.5 27 34-60 7-37 (63)
8 PF05805 L6_membrane: L6 membr 19.4 48 0.001 26.5 0.7 32 76-107 4-35 (195)
9 cd07456 CRD_FZ5_like Cysteine- 18.9 1.1E+02 0.0023 22.3 2.3 50 17-69 39-97 (120)
10 PTZ00317 NADP-dependent malic 17.7 30 0.00064 31.7 -1.0 20 47-66 398-419 (559)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.96 E-value=4e-30 Score=188.71 Aligned_cols=73 Identities=22% Similarity=0.497 Sum_probs=68.0
Q ss_pred CCcchhHHhcccCcchHHHHHHHHHhCccc-cCcccchHHHHhhhcchhhhhccCCCCcchhhHhhhccccCCCCCchh
Q 042702 11 GDLTECWNVLMKLKSCSNEIVIFFLNRQAD-IGPDCCHTIDIITRNCWLAMLTSLGFTAEEGNILRGYCDASSAPSLGG 88 (115)
Q Consensus 11 ~~~~kCWsSL~~v~gC~~EI~~~flnG~~~-IGp~CCkAI~~I~~~CWP~mfps~pf~p~e~~~LKg~C~~~~~psP~~ 88 (115)
.|+.||||||++++||+.||++++++||++ ||++|||||++++ +|||+| |++||||+ +||++|++++..+|++
T Consensus 43 pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~ 116 (118)
T PLN00213 43 PDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPI 116 (118)
T ss_pred ccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCC
Confidence 489999999999999999999999999996 9999999999966 999996 99999999 9999999998766654
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.83 E-value=3.8e-21 Score=125.05 Aligned_cols=64 Identities=30% Similarity=0.677 Sum_probs=56.6
Q ss_pred hhHHhcccCcchHHHHHHHHHhCc-cccCcccchHHHHhhhcchhh---hhccCCCCcc--hhhHhhhccc
Q 042702 15 ECWNVLMKLKSCSNEIVIFFLNRQ-ADIGPDCCHTIDIITRNCWLA---MLTSLGFTAE--EGNILRGYCD 79 (115)
Q Consensus 15 kCWsSL~~v~gC~~EI~~~flnG~-~~IGp~CCkAI~~I~~~CWP~---mfps~pf~p~--e~~~LKg~C~ 79 (115)
|||++++++++|+.||+.+|++|+ ..||++||++|+.++++|||. ||++.|++++ + +.||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence 699999999999999999999998 569999999999999999999 5556666555 4 49999996
No 3
>PLN00214 putative protein; Provisional
Probab=74.90 E-value=2.1 Score=31.90 Aligned_cols=38 Identities=16% Similarity=0.489 Sum_probs=31.2
Q ss_pred cchHHHHHHHHH-hCccccCcccchHHHHhhhcc---hhhhhcc
Q 042702 24 KSCSNEIVIFFL-NRQADIGPDCCHTIDIITRNC---WLAMLTS 63 (115)
Q Consensus 24 ~gC~~EI~~~fl-nG~~~IGp~CCkAI~~I~~~C---WP~mfps 63 (115)
+-|..||+..++ ||. +...||+-+...+.+| |=++|.+
T Consensus 45 ~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~~LiK~i~~ 86 (115)
T PLN00214 45 PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHDTLIKYIAD 86 (115)
T ss_pred HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHHHHHHHHHc
Confidence 559999999999 666 5889999999999999 5555543
No 4
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=34.02 E-value=14 Score=22.42 Aligned_cols=40 Identities=25% Similarity=0.550 Sum_probs=25.3
Q ss_pred hHHhcccCcchHHHHHHHHHhCc---cccCcccchHHHHh-hhcchhhh
Q 042702 16 CWNVLMKLKSCSNEIVIFFLNRQ---ADIGPDCCHTIDII-TRNCWLAM 60 (115)
Q Consensus 16 CWsSL~~v~gC~~EI~~~flnG~---~~IGp~CCkAI~~I-~~~CWP~m 60 (115)
|...+.++.+|..- +++. ..-...||..+..+ ...|.=..
T Consensus 1 C~~~~~~~~~c~~~-----~~~~~~~~~p~~~CC~~l~~~~~~~C~C~~ 44 (79)
T smart00499 1 CGQVLLQLAPCLSY-----LTGGSPGAPPSQQCCSQLRGLNSAQCRCLA 44 (79)
T ss_pred ChhhhhhHHhhHHH-----HcCCCCCCCCchHHHHHHHHhcccCCcchh
Confidence 44445555556533 2332 34678899999999 88886543
No 5
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=33.04 E-value=29 Score=23.04 Aligned_cols=35 Identities=23% Similarity=0.567 Sum_probs=23.7
Q ss_pred hhHHhcccCcchHHHHHHHHHhCcc-ccCcccchHHHHhhh
Q 042702 15 ECWNVLMKLKSCSNEIVIFFLNRQA-DIGPDCCHTIDIITR 54 (115)
Q Consensus 15 kCWsSL~~v~gC~~EI~~~flnG~~-~IGp~CCkAI~~I~~ 54 (115)
+|=..+..+..|.. |++|.. .-.+.||.++..+..
T Consensus 2 ~C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~l~~ 37 (89)
T cd01960 2 SCGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKSLNG 37 (89)
T ss_pred CHHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHHHhh
Confidence 35566667777763 334443 488889999999753
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=32.83 E-value=11 Score=24.46 Aligned_cols=34 Identities=18% Similarity=0.458 Sum_probs=20.8
Q ss_pred cccCcchHHHHHHHHHhCc--cccCcccchHHHHhhhcch
Q 042702 20 LMKLKSCSNEIVIFFLNRQ--ADIGPDCCHTIDIITRNCW 57 (115)
Q Consensus 20 L~~v~gC~~EI~~~flnG~--~~IGp~CCkAI~~I~~~CW 57 (115)
+..+..|.. ++..|. ..-..+||.+|+.++..|-
T Consensus 5 ~~~L~~C~~----yl~~~~~~~~Ps~~CC~~vk~~~~~C~ 40 (73)
T cd04660 5 LDLLAECQP----YVTGPNPPPPPSRECCAALRRADLPCL 40 (73)
T ss_pred HHHHHHHHH----HHcCCCCCCCCCHHHHHHHHcCCcCCE
Confidence 344455653 334444 2366789999998776664
No 7
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=21.28 E-value=66 Score=19.62 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=18.0
Q ss_pred HHhCc-cccCcccchHHHHhhh---cchhhh
Q 042702 34 FLNRQ-ADIGPDCCHTIDIITR---NCWLAM 60 (115)
Q Consensus 34 flnG~-~~IGp~CCkAI~~I~~---~CWP~m 60 (115)
|++|. ..-.+.||.+++.+.+ .|-=..
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~ 37 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVKSDPKCLCAA 37 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHhcChhhHHHH
Confidence 34454 3478889999999964 554443
No 8
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=19.35 E-value=48 Score=26.52 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=27.4
Q ss_pred hccccCCCCCchhHHHHHHhhhhhccccccee
Q 042702 76 GYCDASSAPSLGGLAVIYQASALLYFFPGFLE 107 (115)
Q Consensus 76 g~C~~~~~psP~~~~~~~~~~~~~~~~~~~~~ 107 (115)
+.|++-.+.+--.+|+++.....|+|||+--.
T Consensus 4 ~~carclG~sLl~Lal~~iiaNilL~FP~g~~ 35 (195)
T PF05805_consen 4 GKCARCLGFSLLPLALLCIIANILLFFPNGEV 35 (195)
T ss_pred CcchhhhhhHHHHHHHHHHHHHHheeccCCee
Confidence 45778888888999999999999999998754
No 9
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=18.89 E-value=1.1e+02 Score=22.32 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=34.8
Q ss_pred HHhcccCcchHHHHHHHHHhCc--------c-ccCcccchHHHHhhhcchhhhhccCCCCcc
Q 042702 17 WNVLMKLKSCSNEIVIFFLNRQ--------A-DIGPDCCHTIDIITRNCWLAMLTSLGFTAE 69 (115)
Q Consensus 17 WsSL~~v~gC~~EI~~~flnG~--------~-~IGp~CCkAI~~I~~~CWP~mfps~pf~p~ 69 (115)
|..|.++ +|.-++ ++|+=.= . +.-+.|-.-=..+.+.|+|.| ...+|..+
T Consensus 39 ~~pLv~~-~Csp~l-~~FlCsl~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m-~~~g~~WP 97 (120)
T cd07456 39 FWPLVEI-QCSPDL-KFFLCSMYTPICLEDYDKPLPPCRSVCERARDGCAPIM-RQYGFAWP 97 (120)
T ss_pred HHHHHhC-CCChhH-HHHhHhccCcccCCCCCCcCCccHHHHHHHHHHHHHHH-HHhCCCCC
Confidence 7888886 899777 5554221 1 245778666677788999988 56777765
No 10
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=17.70 E-value=30 Score=31.69 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=15.0
Q ss_pred hHHHHhhhcc-hhhhhc-cCCC
Q 042702 47 HTIDIITRNC-WLAMLT-SLGF 66 (115)
Q Consensus 47 kAI~~I~~~C-WP~mfp-s~pf 66 (115)
..|+.+..+| =|.+|| |||-
T Consensus 398 evv~~Ma~~~~rPIIFaLSNPt 419 (559)
T PTZ00317 398 EVVKTMASNVERPIIFPLSNPT 419 (559)
T ss_pred HHHHHHHhcCCCCEEEECCCCC
Confidence 4566666666 689999 8987
Done!