Query 042702
Match_columns 115
No_of_seqs 91 out of 93
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 15:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l32_A Phosphoprotein; antipar 14.6 42 0.0014 20.5 0.3 19 3-21 16-34 (45)
2 2v5e_A GDNF family receptor al 13.7 5.5 0.00019 30.8 -4.8 55 11-65 113-187 (200)
3 2ebo_A Ebola virus envelope gl 13.1 73 0.0025 21.0 1.2 9 41-49 48-56 (74)
4 1bwo_A NS-LTP1, nonspecific li 11.8 79 0.0027 20.5 1.1 59 16-79 3-74 (90)
5 1sc3_B Interleukin-1 beta conv 9.7 73 0.0025 20.6 0.3 10 96-105 79-88 (88)
6 1afh_A Maize nonspecific lipid 9.3 1E+02 0.0034 20.0 0.9 34 16-53 4-37 (93)
7 1ebo_A Ebola virus envelope pr 9.0 1.1E+02 0.0037 22.1 1.0 8 41-48 85-92 (131)
8 4hat_C Exportin-1; heat repeat 8.3 63 0.0022 29.3 -0.6 54 40-96 555-613 (1023)
9 1ry3_A Carnocin CP52, bacterio 8.2 1.1E+02 0.0038 19.6 0.7 26 28-59 9-35 (64)
10 2ljo_A Non-specific lipid-tran 8.1 1.6E+02 0.0054 19.4 1.4 33 16-53 4-36 (93)
No 1
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=14.59 E-value=42 Score=20.51 Aligned_cols=19 Identities=5% Similarity=0.335 Sum_probs=16.4
Q ss_pred hhhhhhccCCcchhHHhcc
Q 042702 3 LATRLEVRGDLTECWNVLM 21 (115)
Q Consensus 3 l~~rl~~~~~~~kCWsSL~ 21 (115)
+..|++.|+...|=||...
T Consensus 16 iVrkmKtGe~FfKiWS~~~ 34 (45)
T 3l32_A 16 IVRQMRSGERFLKIWSQTV 34 (45)
T ss_dssp HHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHH
Confidence 5678999999999999874
No 2
>2v5e_A GDNF family receptor alpha-1; receptor/glycoprotein complex, alternative splicing, cell membrane, growth factor, ligand-coreceptor; HET: SCR NAG; 2.35A {Rattus norvegicus}
Probab=13.69 E-value=5.5 Score=30.79 Aligned_cols=55 Identities=16% Similarity=0.383 Sum_probs=29.8
Q ss_pred CCcchhHHhcccCcchHHH-----------HHHHHHh------CccccCccc-chHHHHhhhcc--hhhhhccCC
Q 042702 11 GDLTECWNVLMKLKSCSNE-----------IVIFFLN------RQADIGPDC-CHTIDIITRNC--WLAMLTSLG 65 (115)
Q Consensus 11 ~~~~kCWsSL~~v~gC~~E-----------I~~~fln------G~~~IGp~C-CkAI~~I~~~C--WP~mfps~p 65 (115)
...++||.+-..+.+|..| ++...++ ..+.|.+-| |++-.--...| |-.||..||
T Consensus 113 dF~~~C~~~~~s~~~C~~~~~~~Cl~Ay~gliGT~mtpNy~~~~~~~v~~~C~C~~Sgn~~eeC~~f~~~f~~N~ 187 (200)
T 2v5e_A 113 DFFTNCQPESRSVSNCLKENYADCLLAYSGLIGTVMTPNYVDSSSLSVAPWCDCSNSGNDLEDCLKFLNFFKDNT 187 (200)
T ss_dssp HHHHHTCBCTTSSSSBTTCCHHHHHHHHHHTTTSTTCEEECCTTSCCEEESCBCTTCGGGHHHHHHHHHHHHTCH
T ss_pred HHHHhcccCCCCcccccCCChHHHHHHHhhccccccccccccCcccccCCccccCCCCCCHHHHHHHHHHhccCh
Confidence 4566788887777777644 1111111 111234556 56555455567 666776664
No 3
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=13.09 E-value=73 Score=20.99 Aligned_cols=9 Identities=44% Similarity=1.066 Sum_probs=7.3
Q ss_pred cCcccchHH
Q 042702 41 IGPDCCHTI 49 (115)
Q Consensus 41 IGp~CCkAI 49 (115)
+||+||-.+
T Consensus 48 lgpdc~i~~ 56 (74)
T 2ebo_A 48 LGPDCAIEP 56 (74)
T ss_dssp HGGGGGCCC
T ss_pred cCCccccCH
Confidence 999999543
No 4
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=11.84 E-value=79 Score=20.47 Aligned_cols=59 Identities=14% Similarity=0.416 Sum_probs=33.4
Q ss_pred hHHhcccCcchHHHHHHHHHhCccccCcccchHHHHhhh------------cchhhhhccC-CCCcchhhHhhhccc
Q 042702 16 CWNVLMKLKSCSNEIVIFFLNRQADIGPDCCHTIDIITR------------NCWLAMLTSL-GFTAEEGNILRGYCD 79 (115)
Q Consensus 16 CWsSL~~v~gC~~EI~~~flnG~~~IGp~CCkAI~~I~~------------~CWP~mfps~-pf~p~e~~~LKg~C~ 79 (115)
|=+.+.++..|..-+ ..|. ...++||.+++.+.. .|.-....+. ++-+.-+.-|-+.|.
T Consensus 3 C~~v~~~L~pCl~y~----~~~~-~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~ 74 (90)
T 1bwo_A 3 CGHVDSLVRPCLSYV----QGGP-GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCG 74 (90)
T ss_dssp HHHHHHHHGGGHHHH----TTCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHT
T ss_pred HHHHHHhhcccHHHH----cCCC-CCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcC
Confidence 555566666776433 3333 367789999998753 4543333333 344444455666664
No 5
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=9.71 E-value=73 Score=20.61 Aligned_cols=10 Identities=40% Similarity=1.075 Sum_probs=7.1
Q ss_pred hhhhcccccc
Q 042702 96 SALLYFFPGF 105 (115)
Q Consensus 96 ~~~~~~~~~~ 105 (115)
-|.|||+||.
T Consensus 79 tk~lyf~pg~ 88 (88)
T 1sc3_B 79 TRCFYLFPGH 88 (88)
T ss_dssp CSBCCCCTTC
T ss_pred eeEEEcCCCC
Confidence 4578888874
No 6
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=9.33 E-value=1e+02 Score=20.03 Aligned_cols=34 Identities=15% Similarity=0.419 Sum_probs=21.2
Q ss_pred hHHhcccCcchHHHHHHHHHhCccccCcccchHHHHhh
Q 042702 16 CWNVLMKLKSCSNEIVIFFLNRQADIGPDCCHTIDIIT 53 (115)
Q Consensus 16 CWsSL~~v~gC~~EI~~~flnG~~~IGp~CCkAI~~I~ 53 (115)
|=+.+..+..|..-+ ..|...-.++||.+++.+.
T Consensus 4 C~~v~~~L~pCl~y~----~~~~~~Ps~~CC~gv~~l~ 37 (93)
T 1afh_A 4 CGQVASAIAPCISYA----RGQGSGPSAGCCSGVRSLN 37 (93)
T ss_dssp SHHHHHHHGGGHHHH----TTSCCSCCHHHHHHHHHHH
T ss_pred hHHHHHhccCcHHHH----cCCCCCChHHHHHHHHHHH
Confidence 555556666676333 2333235568999999995
No 7
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=8.95 E-value=1.1e+02 Score=22.09 Aligned_cols=8 Identities=50% Similarity=1.194 Sum_probs=6.8
Q ss_pred cCcccchH
Q 042702 41 IGPDCCHT 48 (115)
Q Consensus 41 IGp~CCkA 48 (115)
+||+||--
T Consensus 85 LGPdCcIe 92 (131)
T 1ebo_A 85 LGPDCRIE 92 (131)
T ss_dssp HGGGGGCC
T ss_pred cCCccccC
Confidence 99999953
No 8
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=8.26 E-value=63 Score=29.32 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=34.4
Q ss_pred ccCcccchHHHHhhhcchhhhhc-----cCCCCcchhhHhhhccccCCCCCchhHHHHHHhh
Q 042702 40 DIGPDCCHTIDIITRNCWLAMLT-----SLGFTAEEGNILRGYCDASSAPSLGGLAVIYQAS 96 (115)
Q Consensus 40 ~IGp~CCkAI~~I~~~CWP~mfp-----s~pf~p~e~~~LKg~C~~~~~psP~~~~~~~~~~ 96 (115)
++-.+||.||..+..+|=..+.. ..||+.+ +++.+=.....-.+...-.+|.|-
T Consensus 555 ~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~---il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 555 GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT---IIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH---HHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH---HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 48889999999999999988742 2456665 665443322333444444455443
No 9
>1ry3_A Carnocin CP52, bacteriocin carnobacteriocin B2; amphipathic helix, antibiotic; NMR {Carnobacterium maltaromaticum} SCOP: j.106.1.1
Probab=8.25 E-value=1.1e+02 Score=19.64 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=19.6
Q ss_pred HHHHHHHHhCccc-cCcccchHHHHhhhcchhh
Q 042702 28 NEIVIFFLNRQAD-IGPDCCHTIDIITRNCWLA 59 (115)
Q Consensus 28 ~EI~~~flnG~~~-IGp~CCkAI~~I~~~CWP~ 59 (115)
.|-++.+.-|+.+ .|..| =.+.||.+
T Consensus 9 ~~eL~~i~GG~yyGnGvyC------nk~kC~vd 35 (64)
T 1ry3_A 9 VKEMKQLHGGVNYGNGVSC------SKTKCSVN 35 (64)
T ss_dssp HHHHHTTSCCCSCTTSCCC------SSSCCCCC
T ss_pred HHHHhhhcCCeeeCCcceE------CCceeeec
Confidence 3455677888876 99999 46789875
No 10
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=8.05 E-value=1.6e+02 Score=19.35 Aligned_cols=33 Identities=24% Similarity=0.585 Sum_probs=20.7
Q ss_pred hHHhcccCcchHHHHHHHHHhCccccCcccchHHHHhh
Q 042702 16 CWNVLMKLKSCSNEIVIFFLNRQADIGPDCCHTIDIIT 53 (115)
Q Consensus 16 CWsSL~~v~gC~~EI~~~flnG~~~IGp~CCkAI~~I~ 53 (115)
|=+.+..+-.|. .|+.|.....+.||..++.+.
T Consensus 4 C~~v~~~L~pCl-----~Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 4 CGAVTSDLSPCL-----TYLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp SHHHHHHHHHHH-----HHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH-----HHHcCCCCCCCchhhHHHHHH
Confidence 334444445554 234554458889999998884
Done!