Query 042702
Match_columns 115
No_of_seqs 91 out of 93
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 15:03:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042702.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042702hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 19.4 19 0.0014 22.1 1.2 35 15-54 3-38 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 17.6 22 0.0016 21.8 1.2 34 16-54 3-36 (91)
3 d1q8da_ a.228.1.1 (A:) GDNF re 14.0 5.1 0.00037 26.5 -2.8 26 40-65 70-98 (108)
4 d1k8rb_ d.15.1.5 (B:) Protein 7.9 82 0.006 20.0 1.7 17 20-36 14-30 (95)
5 d1kyqa2 e.37.1.1 (A:151-273) B 7.7 73 0.0053 20.7 1.4 17 63-79 107-123 (123)
6 d2jv3a_ a.60.1.1 (A:) Ets-1 tr 7.6 98 0.0071 19.6 2.0 30 77-108 2-31 (110)
7 g1sc3.1 c.17.1.1 (A:,B:) Inter 7.3 49 0.0035 22.6 0.3 7 98-104 254-260 (261)
8 d2nt0a1 b.71.1.2 (A:1-77,A:432 6.3 56 0.0041 21.6 0.2 34 54-90 2-35 (143)
9 d1hssa_ a.52.1.2 (A:) 0.19 alp 5.8 95 0.0069 20.4 1.1 36 22-58 12-50 (120)
10 d2csua1 c.2.1.8 (A:1-129) Acet 5.1 1.1E+02 0.0078 19.2 1.0 48 52-108 50-102 (129)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=19.41 E-value=19 Score=22.12 Aligned_cols=35 Identities=17% Similarity=0.476 Sum_probs=23.4
Q ss_pred hhHHhcccCcchHHHHHHHHHhCccc-cCcccchHHHHhhh
Q 042702 15 ECWNVLMKLKSCSNEIVIFFLNRQAD-IGPDCCHTIDIITR 54 (115)
Q Consensus 15 kCWsSL~~v~gC~~EI~~~flnG~~~-IGp~CCkAI~~I~~ 54 (115)
.|=+.+.++-.|. .|++|... -.+.||.+++.+.+
T Consensus 3 ~C~~v~~~l~pCl-----~Yltg~~~~Ps~~CC~gv~~l~~ 38 (93)
T d1fk5a_ 3 SCGQVASAIAPCI-----SYARGQGSGPSAGCCSGVRSLNN 38 (93)
T ss_dssp CHHHHHHHHGGGH-----HHHTTCSSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhhH-----HHHhCCCCCCCCchhHHHHHHHH
Confidence 4555566666675 24455544 78899999998863
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=17.57 E-value=22 Score=21.75 Aligned_cols=34 Identities=21% Similarity=0.545 Sum_probs=23.8
Q ss_pred hHHhcccCcchHHHHHHHHHhCccccCcccchHHHHhhh
Q 042702 16 CWNVLMKLKSCSNEIVIFFLNRQADIGPDCCHTIDIITR 54 (115)
Q Consensus 16 CWsSL~~v~gC~~EI~~~flnG~~~IGp~CCkAI~~I~~ 54 (115)
|=+.+..+-.|.. |++|.....+.||.+++.+..
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~~ 36 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLHN 36 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHHH
Confidence 5555666666762 455665699999999988863
No 3
>d1q8da_ a.228.1.1 (A:) GDNF receptor alpha {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.03 E-value=5.1 Score=26.48 Aligned_cols=26 Identities=19% Similarity=0.535 Sum_probs=17.0
Q ss_pred ccCccc-chHHHHhhhcc--hhhhhccCC
Q 042702 40 DIGPDC-CHTIDIITRNC--WLAMLTSLG 65 (115)
Q Consensus 40 ~IGp~C-CkAI~~I~~~C--WP~mfps~p 65 (115)
.|++.| |++...-...| |-+||..||
T Consensus 70 ~v~~~CtC~~sgn~~eeC~~f~~~f~~Np 98 (108)
T d1q8da_ 70 SVAPWCDCSNSGNDLEDCLKFLNFFKDNT 98 (108)
T ss_dssp -CCCSCBCTTCGGGHHHHHHHHHHHHSCH
T ss_pred ccCCcccCCCCCCcHHHHHHHHHHHhcCh
Confidence 355666 77655555668 778888775
No 4
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=7.95 E-value=82 Score=19.99 Aligned_cols=17 Identities=6% Similarity=0.073 Sum_probs=13.3
Q ss_pred cccCcchHHHHHHHHHh
Q 042702 20 LMKLKSCSNEIVIFFLN 36 (115)
Q Consensus 20 L~~v~gC~~EI~~~fln 36 (115)
..++.||.++|+.-.+.
T Consensus 14 ~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEECCSCHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHH
Confidence 67899999997666554
No 5
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.74 E-value=73 Score=20.66 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.4
Q ss_pred cCCCCcchhhHhhhccc
Q 042702 63 SLGFTAEEGNILRGYCD 79 (115)
Q Consensus 63 s~pf~p~e~~~LKg~C~ 79 (115)
..|-+|+..+++++||+
T Consensus 107 ~~~~~pp~~~~~~~~~~ 123 (123)
T d1kyqa2 107 CSLQFPPRERLLSEYCS 123 (123)
T ss_dssp SCCCCCCHHHHHHHSBC
T ss_pred cCCCCCChhHHHHHhhC
Confidence 45788999999999986
No 6
>d2jv3a_ a.60.1.1 (A:) Ets-1 transcription factor pointed domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.59 E-value=98 Score=19.64 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=23.7
Q ss_pred ccccCCCCCchhHHHHHHhhhhhcccccceec
Q 042702 77 YCDASSAPSLGGLAVIYQASALLYFFPGFLEV 108 (115)
Q Consensus 77 ~C~~~~~psP~~~~~~~~~~~~~~~~~~~~~~ 108 (115)
.|......+|.+-+++++|.+- .|+||.++
T Consensus 2 ~~~~~p~~tp~~~~~~~~~~~~--~~~~~~~e 31 (110)
T d2jv3a_ 2 ECADVPLLTPSSKEMMSQALKA--TFSGFTKE 31 (110)
T ss_dssp CCSSCCCSCTTTTHHHHHHHHH--HTHHHHHH
T ss_pred CcccCCCCCCCchHHHHHHHHH--HHHHHHHH
Confidence 4777778899999999999985 45777654
No 7
>g1sc3.1 c.17.1.1 (A:,B:) Interleukin-1beta converting enzyme (a cysteine protease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.31 E-value=49 Score=22.56 Aligned_cols=7 Identities=57% Similarity=1.497 Sum_probs=3.6
Q ss_pred hhccccc
Q 042702 98 LLYFFPG 104 (115)
Q Consensus 98 ~~~~~~~ 104 (115)
-|||+||
T Consensus 254 ~~yf~Pg 260 (261)
T g1sc3.1 254 CFYLFPG 260 (261)
T ss_dssp BCCCCTT
T ss_pred cEEeCCC
Confidence 3455555
No 8
>d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.26 E-value=56 Score=21.56 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=22.0
Q ss_pred hcchhhhhccCCCCcchhhHhhhccccCCCCCchhHH
Q 042702 54 RNCWLAMLTSLGFTAEEGNILRGYCDASSAPSLGGLA 90 (115)
Q Consensus 54 ~~CWP~mfps~pf~p~e~~~LKg~C~~~~~psP~~~~ 90 (115)
..||++.|..-++.=- -=-.|||....|.+...+
T Consensus 2 ~pC~~~~~~~~~~VCv---Cnat~cD~~~~~~~~~~g 35 (143)
T d2nt0a1 2 RPCIPKSFGYSSVVCV---CNATYCDSFDPPTFPALG 35 (143)
T ss_dssp BCCCEECCSSSSCEEE---ECSSCCCBCCCCCCCCTT
T ss_pred CCccccccCCCCEEEE---EeCCcccccCCCCcCCCC
Confidence 4699998866554410 013699998877776554
No 9
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=5.78 E-value=95 Score=20.42 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=25.5
Q ss_pred cCcchHHHHHHHHHhCccc---cCcccchHHHHhhhcchh
Q 042702 22 KLKSCSNEIVIFFLNRQAD---IGPDCCHTIDIITRNCWL 58 (115)
Q Consensus 22 ~v~gC~~EI~~~flnG~~~---IGp~CCkAI~~I~~~CWP 58 (115)
-+++|-..+.+- -.|... +...||+-+..|.+.|+=
T Consensus 12 pL~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CRC 50 (120)
T d1hssa_ 12 ALPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCRC 50 (120)
T ss_dssp CCTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTHH
T ss_pred ccHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccch
Confidence 467888655333 444431 667899999999999975
No 10
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.12 E-value=1.1e+02 Score=19.16 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=32.1
Q ss_pred hhhcchhhhhccCCCCcchhhHhhhccccCCCCCchhHHHHHHhhh-----hhcccccceec
Q 042702 52 ITRNCWLAMLTSLGFTAEEGNILRGYCDASSAPSLGGLAVIYQASA-----LLYFFPGFLEV 108 (115)
Q Consensus 52 I~~~CWP~mfps~pf~p~e~~~LKg~C~~~~~psP~~~~~~~~~~~-----~~~~~~~~~~~ 108 (115)
-+..|+|.+ ..+|..+. ..-+..|+..+..++-++.+ ...+..||-|.
T Consensus 50 ~G~~~y~sl-~dlp~~vD--------lvvi~vp~~~~~~~~~~~~~~g~~~~vi~s~Gf~e~ 102 (129)
T d2csua1 50 QGVKAYKSV-KDIPDEID--------LAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGET 102 (129)
T ss_dssp TTEECBSST-TSCSSCCS--------EEEECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTS
T ss_pred CCeEeecch-hhcCCCCc--------eEEEecChHHhHHHHHHHHHcCCCEEEEeccccccc
Confidence 356777776 45555443 22335688888889888876 56778888764
Done!