BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042704
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C ICL +++EG R+PC H++HQ C+ WL + CP+CR +
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C +C E G ++PC+H++H C+V WL+ CP+CR L+
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLC 196
+ C +CLE K + PC H +H+ CL+ WL+ +CPLC
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 156 CVICLEVMKEGSKAARMP-CSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C +CL +++G +A +P C H +H +C+ WL + S CPLCR +
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
C IC +G A +PC H +H+ C+ WL+ S CP+CR
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
Q CV+C+ + +PC+H +H C+ WLK + CP+CR
Sbjct: 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 149 EGCSQQYCVICLEVMKEGSKAAR-MPCSHIYHQDCLVNWLKNSSLCPLC 196
E SQQ C ICLE + A +PC H+ H+ C LK CPLC
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
++ C IC++ G +PC+H + Q C+ W CP+CR Q++
Sbjct: 15 EEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 156 CVICL----EVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C IC+ E+++ G C H++ CL + LKN++ CP CR +++
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 156 CVICL----EVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C IC+ E+++ G C H++ CL + LKN++ CP CR +++
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 156 CVICL----EVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C IC+ E+++ G C H++ CL + LKN++ CP CR +++
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 156 CVICL----EVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C IC+ E+++ G C H++ CL + LKN++ CP CR +++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 156 CVICL----EVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C IC+ E+++ G C H++ CL + LKN++ CP CR +++
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 35.4 bits (80), Expect = 0.021, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 156 CVICLEVMKEGSKAAR-MPCSHIYHQDCLVNWLKNSSLCPLC 196
C ICLE + A +PC H+ H+ C LK CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
+ C ICLE S A +PC H + C+ W++ + CPLC+ +
Sbjct: 6 ERCPICLEDPSNYSMA--LPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 147 AIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSL-CPLCRFQLS 201
AI S+ C IC+E++ E +PC+H + C + ++ +SL CP CR ++S
Sbjct: 9 AIPSLSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDC---LVNWLKNSSLCPLCR 197
C ICLE++KE C HI+ + C L+N K S CPLC+
Sbjct: 24 CPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
C+IC E E A + C+H + C+ W+K CP+CR
Sbjct: 67 CIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICR 105
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
C+IC E E A + C+H + C+ W+K CP+CR
Sbjct: 56 CIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
C+IC E E A + C+H + C+ W+K CP+CR
Sbjct: 56 CIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICR 94
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 150 GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSL-CPLCR 197
G + Q C IC E K+ PC H+ CL +W ++ CP CR
Sbjct: 331 GSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 150 GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSL-CPLCR 197
G + Q C IC E K+ PC H+ CL +W ++ CP CR
Sbjct: 331 GSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 150 GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSL-CPLCR 197
G + Q C IC E K+ PC H+ CL +W ++ CP CR
Sbjct: 329 GSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 150 GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSL-CPLCR 197
G + Q C IC E K+ PC H+ CL +W ++ CP CR
Sbjct: 329 GSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 150 GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK-NSSLCPLCR 197
G + Q C IC E K+ PC H+ CL W + + CP CR
Sbjct: 335 GSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 174 CSHIYHQDCLVNWLKNSSLCPL 195
C+H +H C+ WLK +CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 174 CSHIYHQDCLVNWLKNSSLCPL 195
C+H +H C+ WLK +CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 150 GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSL-CPLCRFQLS 201
G + Q C IC E K+ PC H+ CL +W ++ CP CR ++
Sbjct: 24 GSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 73
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 174 CSHIYHQDCLVNWLKNSSLCPL 195
C+H +H C+ WLK +CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 174 CSHIYHQDCLVNWLKNSSLCPL 195
C+H +H C+ WLK +CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 174 CSHIYHQDCLVNWLKNSSLCPL 195
C+H +H C+ WLK +CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 174 CSHIYHQDCLVNWLKNSSLCPL 195
C+H +H C+ WLK +CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 150 GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSL-CPLCRFQLS 201
G + Q C IC E K+ PC H+ CL +W ++ CP CR ++
Sbjct: 21 GSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 70
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 165 EGSKAARMPCSHIYHQDCLVNWLKNSSLCPL 195
E A C+H +H C+ WLK +CPL
Sbjct: 48 EECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 135 RSINTQVLKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCP 194
R+ ++ +L P + CV+C + + + C H + + C+V +L+ S CP
Sbjct: 3 RTTRIKITELNPHL------MCVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCP 54
Query: 195 LCRFQL 200
+C Q+
Sbjct: 55 ICDVQV 60
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 135 RSINTQVLKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCP 194
R+ ++ +L P + CV+C + + + C H + + C+V +L+ S CP
Sbjct: 3 RTTRIKITELNPHL------MCVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCP 54
Query: 195 LCRFQL 200
+C Q+
Sbjct: 55 ICDVQV 60
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 150 GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK-NSSLCPLCRFQLS 201
G + Q C IC E K+ PC H+ CL W + + CP CR ++
Sbjct: 23 GSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 72
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 142 LKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS-LCPL 195
++ P +E S+ C ICL ++E A + PC H + + C++ ++++ CP+
Sbjct: 16 VEFDPPLE--SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPV 65
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
CV+C + + + C H + + C+V +L+ S CP+C Q+
Sbjct: 14 CVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDVQV 56
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 173 PCSHIYHQDCLVNWLKNSSLCPLCR 197
C+H +H C+ W+K ++ CPLC+
Sbjct: 47 ECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS-LCPL 195
S+ C ICL ++E A + PC H + + C++ ++++ CP+
Sbjct: 5 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPV 46
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
Query: 152 SQQYCVICLEVMKEGSKAARM--PCS-----HIYHQDCLVNWLKNSS--LCPLCRFQL 200
SQ C IC EG + + PC H HQ CL W+K+S C LC+++
Sbjct: 14 SQDICRIC---HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS----LCPLCRFQL 200
+ +C +C K G CS +YH DCL LK +CP C+ Q+
Sbjct: 5 EDFCSVC---RKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 142 LKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS-LCPL 195
++ P +E S+ C ICL ++E A + PC H + + C++ ++++ CP+
Sbjct: 9 VEFDPPLE--SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 142 LKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS-LCPL 195
++ P +E S+ C ICL ++E A + PC H + + C++ ++++ CP+
Sbjct: 9 VEFDPPLE--SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPV 58
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 9/48 (18%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCL-VNWLKNSSL-----CPLCR 197
C ICLE++KE A C+H + + C+ +N+ N + CP+CR
Sbjct: 22 CPICLELLKEPVSAD---CNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 26.6 bits (57), Expect = 8.7, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS----LCPLCRFQ 199
+ +C +C K G CS +YH DCL LK +CP C+ Q
Sbjct: 9 EDFCSVC---RKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,235,249
Number of Sequences: 62578
Number of extensions: 170725
Number of successful extensions: 538
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 50
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)