BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042704
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 127 AAIDEAVTRSINTQVLKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNW 186
+AID T + +LK C +C++ ++GS +MPC H++HQDCL+ W
Sbjct: 194 SAIDALPTVKVTKDMLK-------SEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPW 246
Query: 187 LKNSSLCPLCRFQL 200
L+ + CP+CRF+L
Sbjct: 247 LELHNSCPVCRFEL 260
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 35/45 (77%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C +C++ +EG++A +MPC H+YH+DCL+ WL+ + CP+CR +L
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHEL 268
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 149 EGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
EG C +C + M G ++PC H YH DC+V WL + CP+CRFQL
Sbjct: 250 EGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQL 301
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 129 IDEAVTRSI-NTQVLKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWL 187
+ EA R+I V ++ + EG + C +C E +EG K +PC H +H++C++ WL
Sbjct: 43 VPEASKRAILELPVHEIVKSDEGGDLE-CSVCKEPAEEGQKYRILPCKHEFHEECILLWL 101
Query: 188 KNSSLCPLCRFQLS 201
K ++ CPLCR++L
Sbjct: 102 KKTNSCPLCRYELE 115
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 57.4 bits (137), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 104 SGIIPLVVIIKAANVSYDINEEAAAIDEAVTRSINTQVLKLAPAIEGCSQQYCVICLEVM 163
SG +P + + + ++ D +++ + + +++T+ A++ CS +C+
Sbjct: 538 SGSLPFLSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNFGENDALKTCS-----VCITEY 592
Query: 164 KEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
EG+K ++PCSH YH C+ WL +S CP+CR
Sbjct: 593 TEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 626
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 131 EAVTRSINTQVLKLAP-----AIEG--CSQQYCVICLEVMKEGSKAARMP-CSHIYHQDC 182
E R +N V+ P A +G S C +CL V+KE KA +P C HI+H DC
Sbjct: 76 EMPKRGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDC 135
Query: 183 LVNWLKNSSLCPLCRFQL 200
+ WL S CP+CR ++
Sbjct: 136 VDTWLTTCSTCPVCRTEV 153
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 57.0 bits (136), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 127 AAIDEAVTRSINTQVLKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNW 186
A + R++NT P C+IC E M G+K R+PC+HI+H CL +W
Sbjct: 262 AIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAK--RLPCNHIFHTSCLRSW 319
Query: 187 LKNSSLCPLCRFQL 200
+ CP CR +
Sbjct: 320 FQRQQTCPTCRMDV 333
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 57.0 bits (136), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 104 SGIIPLVVIIKAANVSYDINEEAAAIDEAVTRSINTQVLKLAPAIEGCSQQYCVICLEVM 163
SG +P + + + ++ D +++ + + +++T+ A++ CS +C+
Sbjct: 521 SGSLPFLSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNFGENDALKTCS-----VCITEY 575
Query: 164 KEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
EG+K ++PCSH YH C+ WL +S CP+CR
Sbjct: 576 TEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 609
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 57.0 bits (136), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 127 AAIDEAVTRSINTQVLKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNW 186
A + R++NT P C+IC E M G+K R+PC+HI+H CL +W
Sbjct: 262 AIMSRRAIRNMNTLYPDATPEELQAVDNVCIICREEMVTGAK--RLPCNHIFHTSCLRSW 319
Query: 187 LKNSSLCPLCRFQL 200
+ CP CR +
Sbjct: 320 FQRQQTCPTCRMDV 333
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 57.0 bits (136), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C ICL +++EG R+PC H++HQ C+ WL + CP+CR +
Sbjct: 902 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 946
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 127 AAIDEAVTRSINTQVLKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNW 186
A + R++NT P + C+IC E M G+K ++PC+HI+H CL +W
Sbjct: 262 AIMSRRAIRNMNTLYPDATPEDLQATDNVCIICREEMVTGAK--KLPCNHIFHSSCLRSW 319
Query: 187 LKNSSLCPLCRFQL 200
+ CP CR +
Sbjct: 320 FQRQQTCPTCRMDV 333
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C ICL +++EG R+PC H++HQ C+ WL + CP+CR +
Sbjct: 915 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 959
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C ICL +++EG R+PC H++HQ C+ WL + CP+CR +
Sbjct: 907 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 951
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C ICL +++EG R+PC H++HQ C+ WL + CP+CR +
Sbjct: 871 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 915
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 104 SGIIPLVVIIKAANVSYDINEEAAAIDEAVTRSINTQVLKLAPAIEGCSQQYCVICLEVM 163
SG +P + + + ++ D +++ + + +++T+ A++ CS +C+
Sbjct: 656 SGSLPFLSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNYGENDALKTCS-----VCITEY 710
Query: 164 KEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
EG+K ++PCSH YH C+ WL +S CP+CR
Sbjct: 711 TEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 744
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C ICL +++EG R+PC H++HQ C+ WL + CP+CR +
Sbjct: 937 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 981
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C ICL +++EG R+PC H++HQ C+ WL + CP+CR +
Sbjct: 934 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 978
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C ICL +++EG R+PC H++HQ C+ WL + CP+CR +
Sbjct: 942 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 986
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
C +C+ EG+K ++PCSH YH C+ WL +S CP+CR
Sbjct: 570 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 611
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 149 EGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
E + + C ICL ++++G R+PC H++HQ C+ WL S CP+CR
Sbjct: 288 ESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 336
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 149 EGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
E + + C ICL ++++G R+PC H++HQ C+ WL S CP+CR
Sbjct: 287 ESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 335
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C+IC E M G+K R+PC+HI+H CL +W + CP CR +
Sbjct: 285 CIICREEMVTGAK--RLPCNHIFHTSCLRSWFQRQQTCPTCRMDV 327
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
C+IC E M S R+PCSH++H CL +W + CP CR
Sbjct: 292 CIICREEMTVESSPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
C+IC E M + R+PCSH++H CL +W + CP CR
Sbjct: 292 CIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 135 RSINTQVLKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCP 194
R++NT P S C+IC E M SK ++PC HI+H CL +W + CP
Sbjct: 268 RNMNTLYPDATPEELRQSDNICIICREDMVNHSK--KLPCGHIFHTTCLRSWFQRQQTCP 325
Query: 195 LCRFQL 200
CR +
Sbjct: 326 TCRLNI 331
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
C+IC E M G+K R+PC+HI+H CL +W + CP CR
Sbjct: 285 CIICREEMVSGAK--RLPCNHIFHTSCLRSWFQRQQTCPTCR 324
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 127 AAIDEAVTRSINTQVLKLAPAIEGCSQQYCVICLEVMKEGSKAARMP-CSHIYHQDCLVN 185
A +D + +SI+ V K +G C +CL + +G KA +P C+H +H DC+
Sbjct: 94 AGLDSKILQSIHVVVFKCTDFKDGLE---CAVCLSDLVDGDKARVLPRCNHGFHVDCIDM 150
Query: 186 WLKNSSLCPLCR 197
W ++ S CPLCR
Sbjct: 151 WFQSHSTCPLCR 162
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
+ C +C+ EG+K ++PCSH YH C+ WL +S CP+CR
Sbjct: 544 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 587
>sp|Q9EPZ8|RN103_RAT E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103
PE=2 SV=1
Length = 682
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS-LCPLCRF 198
CV+CLE + G +PC H++HQ+C+V WL CP+CR+
Sbjct: 618 CVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRW 661
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C +C E G ++PC+H++H DC++ WL+ CP+CR LS
Sbjct: 228 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLS 273
>sp|Q9R1W3|RN103_MOUSE E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2
SV=2
Length = 683
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS-LCPLCRF 198
CV+CLE + G +PC H++HQ+C+V WL CP+CR+
Sbjct: 619 CVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRW 662
>sp|O00237|RN103_HUMAN E3 ubiquitin-protein ligase RNF103 OS=Homo sapiens GN=RNF103 PE=1
SV=1
Length = 685
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS-LCPLCRF 198
CV+CLE + G +PC H++HQ+C+V WL CP+CR+
Sbjct: 621 CVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRW 664
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C +C E G ++PC+H++H DC++ WL+ CP+CR LS
Sbjct: 227 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLS 272
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 130 DEAVTRSINTQVLKLAPAIEGCSQQ-----YCVICLEVMKEGSKAARMPCSHIYHQDCLV 184
D+ + + +V++ P + +Q C +CL +EG ++PC H++H C++
Sbjct: 48 DQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACIL 107
Query: 185 NWLKNSSLCPLCRFQL 200
WL ++ CPLCR +L
Sbjct: 108 PWLGKTNSCPLCRHEL 123
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C +CL +EG ++PC H++H C++ WL ++ CPLCR +L
Sbjct: 79 CPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHEL 123
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 131 EAVTRSINTQVLKLAPAIEGCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNS 190
+AV +S+ ++ A +G C +CL +E MPC H++H C++ WL +
Sbjct: 57 KAVVQSLPVVIISPEQADKGVK---CPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKT 113
Query: 191 SLCPLCRFQL 200
+ CPLCR +L
Sbjct: 114 NSCPLCRLEL 123
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 156 CVICLEVMKEG--SKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
C IC + M E +A +MPC HI+ ++CL WL+N CPLCR
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCR 150
>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana
GN=ATL61 PE=3 SV=1
Length = 204
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 136 SINTQVLKLAPAIEGCSQQY-----CVICLEVMKEGSKAARMP-CSHIYHQDCLVNWLKN 189
I VL+ P ++ ++ + CV+CL + +G KA +P C H +H +C+ +WL++
Sbjct: 63 GIKPYVLRSIPIVDFNTKDFKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQS 122
Query: 190 SSLCPLCRFQL 200
+S CP+CR ++
Sbjct: 123 NSTCPICRKRV 133
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 128 AIDEAVTRSINTQVLKLAPAIE-GCSQQYCVICLEVMKEGSKAARM--PCSHIYHQDCLV 184
+D +S + V A IE G + CV+CL K+ + R+ PC H++H DC+
Sbjct: 56 GLDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKD-DETLRLVPPCVHVFHADCVD 114
Query: 185 NWLKNSSLCPLCR 197
WL +SS CP+CR
Sbjct: 115 IWLSHSSTCPICR 127
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C ICL ++G++ +PC+H +H C+V WLK + CPLC++ +
Sbjct: 307 CCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C +C E G ++PC+H++H DC++ WL+ CP+CR LS
Sbjct: 228 CPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLS 273
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSL-CPLCR 197
CV+CL +KEG + ++ C H++H+ CL WL + CPLCR
Sbjct: 86 CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCR 128
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
S Q C+IC +++K+G C H+Y CL WLK+SS CP+C+ +L+
Sbjct: 1088 SHQICIICRDIIKQGFITT---CGHLYCSFCLEAWLKHSSSCPMCKTKLN 1134
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 120 YDINEEAAAIDEAVTRSINTQVLKLAPAIEG-----CSQQYCVICLEVMKEGSKAARMP- 173
Y +E +DE+ R+I K + G + Q C +CL +E K +P
Sbjct: 93 YSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPN 152
Query: 174 CSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C H++H DC+ WL+ ++ CPLCR +S
Sbjct: 153 CCHVFHIDCIDIWLQGNANCPLCRTSVS 180
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C IC + M+ A ++PC H++H CL +WL+ + CP CR L+
Sbjct: 341 CAICWDSMQ---AARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLN 383
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201
C IC + M+ A ++PC H++H CL +WL+ + CP CR L+
Sbjct: 341 CAICWDSMQ---AARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLN 383
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 122 INEEAAAIDEAVTRSINTQVLKLAPAI-EGCSQQYCVICLEVMKEGSKAARMPCSHIYHQ 180
+ E+ + + + ++ T+ K + + CVIC K G + +PC H+YH
Sbjct: 162 VGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQLKYKIGERQMNLPCKHVYHS 221
Query: 181 DCLVNWLKNSSLCPLCRFQL 200
+C+ WL + +CP+C ++
Sbjct: 222 ECISKWLSINKVCPVCNSEV 241
>sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRD1 PE=1
SV=1
Length = 551
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 10/52 (19%)
Query: 156 CVICLEVM----------KEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCR 197
C+IC++ + + K R+PC HI H CL NW++ S CP+CR
Sbjct: 349 CIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMERSQTCPICR 400
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200
C +CL +E A MPC H++H C++ WL ++ CPLCR++L
Sbjct: 76 CPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYEL 120
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 156 CVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSL-CPLCR 197
C++CL +K G + ++ C H++H+ CL WL++ + CPLCR
Sbjct: 74 CIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCR 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,718,855
Number of Sequences: 539616
Number of extensions: 2436645
Number of successful extensions: 6804
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 6357
Number of HSP's gapped (non-prelim): 622
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)