Query 042704
Match_columns 201
No_of_seqs 190 out of 1956
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.6 6.2E-16 2.1E-20 99.8 3.6 50 152-201 4-54 (55)
2 2l0b_A E3 ubiquitin-protein li 99.6 6.9E-16 2.4E-20 110.2 4.2 50 152-201 39-88 (91)
3 1x4j_A Ring finger protein 38; 99.6 1.3E-15 4.4E-20 104.6 4.1 50 152-201 22-71 (75)
4 2kiz_A E3 ubiquitin-protein li 99.6 2.8E-15 9.5E-20 101.1 4.7 49 152-200 13-61 (69)
5 2ep4_A Ring finger protein 24; 99.5 4.3E-15 1.5E-19 101.5 4.4 49 152-200 14-62 (74)
6 2ecm_A Ring finger and CHY zin 99.5 9.5E-15 3.2E-19 94.0 4.6 50 152-201 4-54 (55)
7 2ect_A Ring finger protein 126 99.5 6.8E-15 2.3E-19 101.5 3.9 49 152-200 14-62 (78)
8 2ecl_A Ring-box protein 2; RNF 99.5 9E-15 3.1E-19 102.3 3.2 50 152-201 14-75 (81)
9 3dpl_R Ring-box protein 1; ubi 99.4 6.3E-14 2.2E-18 103.1 5.2 49 152-200 36-99 (106)
10 2ea6_A Ring finger protein 4; 99.4 7.6E-14 2.6E-18 93.5 4.2 50 152-201 14-67 (69)
11 1v87_A Deltex protein 2; ring- 99.4 1E-13 3.6E-18 102.2 5.0 49 152-200 24-92 (114)
12 3ng2_A RNF4, snurf, ring finge 99.4 6.9E-14 2.3E-18 94.4 3.7 49 152-200 9-61 (71)
13 2xeu_A Ring finger protein 4; 99.4 9.9E-14 3.4E-18 91.6 3.3 48 153-200 3-54 (64)
14 2d8t_A Dactylidin, ring finger 99.4 1.5E-13 5.1E-18 93.3 4.0 46 152-200 14-59 (71)
15 1chc_A Equine herpes virus-1 r 99.4 1.4E-13 4.7E-18 92.4 3.7 47 152-200 4-50 (68)
16 4ayc_A E3 ubiquitin-protein li 99.4 3.4E-13 1.2E-17 103.1 4.0 44 154-200 54-97 (138)
17 2djb_A Polycomb group ring fin 99.3 5.4E-13 1.9E-17 90.7 4.3 46 152-200 14-60 (72)
18 2csy_A Zinc finger protein 183 99.3 7.9E-13 2.7E-17 91.8 4.6 46 152-200 14-59 (81)
19 4a0k_B E3 ubiquitin-protein li 99.3 1.5E-13 5.2E-18 102.7 0.5 50 151-200 46-110 (117)
20 2ct2_A Tripartite motif protei 99.3 9.9E-13 3.4E-17 92.2 4.7 49 152-200 14-66 (88)
21 2d8s_A Cellular modulator of i 99.3 5.3E-13 1.8E-17 93.3 3.2 49 152-201 14-69 (80)
22 2ecn_A Ring finger protein 141 99.3 2.3E-13 8E-18 91.8 1.1 45 152-200 14-58 (70)
23 2ysl_A Tripartite motif-contai 99.3 1.2E-12 4.2E-17 88.7 4.5 46 152-200 19-67 (73)
24 2ecy_A TNF receptor-associated 99.3 1E-12 3.5E-17 87.8 3.7 46 152-200 14-60 (66)
25 3lrq_A E3 ubiquitin-protein li 99.3 1.5E-12 5.1E-17 94.2 4.0 45 153-200 22-68 (100)
26 1t1h_A Gspef-atpub14, armadill 99.3 2E-12 6.7E-17 89.0 4.4 46 152-200 7-53 (78)
27 2yur_A Retinoblastoma-binding 99.3 1.4E-12 4.9E-17 89.2 3.6 46 152-200 14-62 (74)
28 2y43_A E3 ubiquitin-protein li 99.3 3.8E-12 1.3E-16 91.6 4.4 45 153-200 22-67 (99)
29 2ecw_A Tripartite motif-contai 99.2 4.6E-12 1.6E-16 87.8 4.5 46 152-200 18-69 (85)
30 2ckl_A Polycomb group ring fin 99.2 5.6E-12 1.9E-16 92.2 4.6 45 153-200 15-60 (108)
31 3fl2_A E3 ubiquitin-protein li 99.2 5.1E-12 1.8E-16 94.6 4.4 45 153-200 52-97 (124)
32 2egp_A Tripartite motif-contai 99.2 1.4E-12 4.8E-17 89.7 0.8 46 152-200 11-63 (79)
33 2ysj_A Tripartite motif-contai 99.2 7.9E-12 2.7E-16 82.5 4.5 42 152-196 19-63 (63)
34 2ecv_A Tripartite motif-contai 99.2 4.9E-12 1.7E-16 87.7 3.3 46 152-200 18-69 (85)
35 4ap4_A E3 ubiquitin ligase RNF 99.2 4.4E-12 1.5E-16 94.9 3.3 49 152-200 6-58 (133)
36 3ztg_A E3 ubiquitin-protein li 99.2 1.1E-11 3.6E-16 87.9 4.0 46 152-200 12-60 (92)
37 2ct0_A Non-SMC element 1 homol 99.2 9.8E-12 3.3E-16 85.6 3.3 47 153-201 15-63 (74)
38 1g25_A CDK-activating kinase a 99.2 2.2E-11 7.4E-16 81.0 4.4 48 153-200 3-53 (65)
39 2ecj_A Tripartite motif-contai 99.2 1.2E-11 4.1E-16 80.0 3.0 42 152-196 14-58 (58)
40 4ap4_A E3 ubiquitin ligase RNF 99.2 1.8E-11 6.2E-16 91.5 4.0 50 152-201 71-124 (133)
41 1jm7_A BRCA1, breast cancer ty 99.1 1.7E-11 5.7E-16 89.7 3.5 44 154-200 22-68 (112)
42 2ckl_B Ubiquitin ligase protei 99.1 2.9E-11 1E-15 94.7 4.5 45 153-200 54-100 (165)
43 1z6u_A NP95-like ring finger p 99.1 3.6E-11 1.2E-15 93.3 4.7 45 153-200 78-123 (150)
44 3hct_A TNF receptor-associated 99.1 2.7E-11 9.2E-16 90.0 3.5 46 152-200 17-63 (118)
45 2kr4_A Ubiquitin conjugation f 99.1 5.4E-11 1.9E-15 83.7 4.5 47 152-201 13-59 (85)
46 1rmd_A RAG1; V(D)J recombinati 99.1 4E-11 1.4E-15 88.6 4.0 45 153-200 23-68 (116)
47 3l11_A E3 ubiquitin-protein li 99.1 1.3E-11 4.6E-16 91.0 1.2 46 152-200 14-60 (115)
48 2vje_A E3 ubiquitin-protein li 99.1 6.3E-11 2.2E-15 79.0 3.4 46 152-200 7-55 (64)
49 2kre_A Ubiquitin conjugation f 99.1 7.6E-11 2.6E-15 85.6 4.1 47 152-201 28-74 (100)
50 1wgm_A Ubiquitin conjugation f 99.0 1.4E-10 4.8E-15 83.8 4.5 47 152-201 21-68 (98)
51 2y1n_A E3 ubiquitin-protein li 99.0 2.5E-10 8.5E-15 100.9 5.1 44 154-200 333-377 (389)
52 3knv_A TNF receptor-associated 99.0 9.4E-11 3.2E-15 90.1 1.4 46 152-200 30-76 (141)
53 2vje_B MDM4 protein; proto-onc 99.0 2.8E-10 9.5E-15 75.6 3.5 45 153-200 7-54 (63)
54 1bor_A Transcription factor PM 99.0 7.9E-11 2.7E-15 76.4 0.6 43 152-200 5-47 (56)
55 4ic3_A E3 ubiquitin-protein li 98.9 2.5E-10 8.7E-15 78.1 2.3 40 154-200 25-65 (74)
56 1e4u_A Transcriptional repress 98.9 4.6E-10 1.6E-14 77.9 3.5 48 152-200 10-60 (78)
57 1jm7_B BARD1, BRCA1-associated 98.9 1.7E-10 5.7E-15 85.5 0.7 43 153-200 22-65 (117)
58 2c2l_A CHIP, carboxy terminus 98.9 1.2E-09 4.2E-14 91.0 4.2 47 152-201 207-254 (281)
59 3hcs_A TNF receptor-associated 98.9 1.2E-09 4E-14 85.8 3.5 46 152-200 17-63 (170)
60 2yu4_A E3 SUMO-protein ligase 98.8 1.7E-09 5.9E-14 77.3 3.2 45 152-199 6-59 (94)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.8 3.5E-09 1.2E-13 69.8 3.6 48 151-201 4-58 (60)
62 2f42_A STIP1 homology and U-bo 98.8 1.1E-08 3.7E-13 81.6 7.1 47 152-201 105-152 (179)
63 2ecg_A Baculoviral IAP repeat- 98.7 4E-09 1.4E-13 72.1 2.6 40 154-200 26-66 (75)
64 3k1l_B Fancl; UBC, ring, RWD, 98.7 2.4E-09 8.2E-14 92.9 0.7 49 152-200 307-371 (381)
65 2ea5_A Cell growth regulator w 98.7 1.3E-08 4.4E-13 68.6 3.2 42 152-200 14-56 (68)
66 2yho_A E3 ubiquitin-protein li 98.6 7.8E-09 2.7E-13 71.6 1.9 40 154-200 19-59 (79)
67 1wim_A KIAA0161 protein; ring 98.6 2.8E-08 9.5E-13 70.6 3.1 48 152-199 4-61 (94)
68 2bay_A PRE-mRNA splicing facto 98.5 5.4E-08 1.8E-12 64.2 3.1 44 154-200 4-48 (61)
69 3t6p_A Baculoviral IAP repeat- 98.5 3.3E-08 1.1E-12 86.3 1.6 42 152-200 294-336 (345)
70 3htk_C E3 SUMO-protein ligase 98.4 1.1E-07 3.6E-12 79.9 2.5 46 152-200 180-230 (267)
71 3vk6_A E3 ubiquitin-protein li 98.2 1.3E-06 4.3E-11 62.9 3.8 44 155-200 3-47 (101)
72 3nw0_A Non-structural maintena 97.9 4.9E-06 1.7E-10 68.9 2.7 47 153-201 180-228 (238)
73 2ko5_A Ring finger protein Z; 94.5 0.013 4.5E-07 41.4 1.6 45 152-201 27-72 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.3 0.03 1E-06 39.3 3.1 34 153-186 3-36 (101)
75 1wil_A KIAA1045 protein; ring 92.2 0.095 3.3E-06 36.2 2.8 31 152-186 14-47 (89)
76 2lri_C Autoimmune regulator; Z 91.3 0.11 3.7E-06 34.2 2.3 45 152-199 11-59 (66)
77 3m62_A Ubiquitin conjugation f 88.9 0.37 1.3E-05 46.9 4.6 46 152-200 890-936 (968)
78 2l5u_A Chromodomain-helicase-D 87.8 0.29 1E-05 31.4 2.3 47 150-199 8-58 (61)
79 1mm2_A MI2-beta; PHD, zinc fin 83.9 0.23 7.9E-06 31.9 0.2 46 151-199 7-56 (61)
80 1f62_A Transcription factor WS 82.9 0.57 1.9E-05 28.6 1.8 44 155-198 2-49 (51)
81 2k16_A Transcription initiatio 73.1 0.76 2.6E-05 30.4 0.1 47 153-199 18-68 (75)
82 1fp0_A KAP-1 corepressor; PHD 72.7 1.3 4.5E-05 30.7 1.3 46 150-198 22-71 (88)
83 1we9_A PHD finger family prote 72.4 0.45 1.5E-05 30.5 -1.1 48 152-199 5-58 (64)
84 1zbd_B Rabphilin-3A; G protein 72.2 3.3 0.00011 30.8 3.5 33 152-184 54-88 (134)
85 2ysm_A Myeloid/lymphoid or mix 68.1 1.4 4.9E-05 31.2 0.7 37 152-188 6-42 (111)
86 2kgg_A Histone demethylase jar 67.3 5.5 0.00019 24.3 3.2 43 155-197 4-52 (52)
87 2lbm_A Transcriptional regulat 66.6 6.8 0.00023 29.4 4.2 47 150-199 60-117 (142)
88 2yql_A PHD finger protein 21A; 65.9 0.33 1.1E-05 30.5 -2.8 44 152-198 8-55 (56)
89 3v43_A Histone acetyltransfera 65.8 7.7 0.00026 27.5 4.3 32 153-184 5-42 (112)
90 1xwh_A Autoimmune regulator; P 65.5 0.47 1.6E-05 30.8 -2.2 44 152-198 7-54 (66)
91 2puy_A PHD finger protein 21A; 64.5 0.59 2E-05 29.7 -1.8 44 152-198 4-51 (60)
92 3v43_A Histone acetyltransfera 61.8 2.1 7.1E-05 30.6 0.5 45 154-198 62-111 (112)
93 2lv9_A Histone-lysine N-methyl 59.4 2.2 7.5E-05 29.9 0.3 44 154-198 29-75 (98)
94 3asl_A E3 ubiquitin-protein li 58.8 1.7 5.9E-05 28.5 -0.3 45 155-199 20-69 (70)
95 3i2d_A E3 SUMO-protein ligase 57.8 9.7 0.00033 33.1 4.1 46 153-200 249-298 (371)
96 4fo9_A E3 SUMO-protein ligase 57.3 9.9 0.00034 32.9 4.1 46 153-200 215-264 (360)
97 2e6s_A E3 ubiquitin-protein li 57.2 2 6.7E-05 28.9 -0.3 45 154-198 27-76 (77)
98 2cu8_A Cysteine-rich protein 2 57.1 4.7 0.00016 26.0 1.7 37 154-200 10-46 (76)
99 1wep_A PHF8; structural genomi 55.9 8.8 0.0003 25.4 2.9 46 153-199 12-63 (79)
100 3shb_A E3 ubiquitin-protein li 55.7 1.5 5.2E-05 29.5 -1.1 44 155-198 28-76 (77)
101 2dj7_A Actin-binding LIM prote 55.2 5.5 0.00019 26.3 1.7 38 153-200 15-52 (80)
102 1iml_A CRIP, cysteine rich int 54.7 3.5 0.00012 26.7 0.7 42 153-198 27-69 (76)
103 2jvx_A NF-kappa-B essential mo 51.1 2.8 9.7E-05 22.7 -0.2 11 191-201 4-14 (28)
104 3ql9_A Transcriptional regulat 47.9 18 0.00061 26.6 3.7 44 152-198 56-110 (129)
105 2co8_A NEDD9 interacting prote 46.5 8.2 0.00028 25.4 1.5 39 152-200 14-52 (82)
106 2vpb_A Hpygo1, pygopus homolog 46.2 17 0.00058 23.3 3.0 31 153-183 8-40 (65)
107 2e6r_A Jumonji/ARID domain-con 46.1 0.98 3.4E-05 31.4 -3.4 47 152-198 15-65 (92)
108 1z2q_A LM5-1; membrane protein 45.6 8.3 0.00028 25.9 1.4 39 147-185 15-54 (84)
109 1joc_A EEA1, early endosomal a 45.1 7.9 0.00027 28.2 1.3 40 146-185 62-102 (125)
110 2cs3_A Protein C14ORF4, MY039 44.4 32 0.0011 23.4 4.1 36 152-188 14-51 (93)
111 2yw8_A RUN and FYVE domain-con 44.4 7 0.00024 26.2 0.9 39 147-185 13-52 (82)
112 1x4u_A Zinc finger, FYVE domai 44.3 8 0.00027 26.0 1.2 37 147-185 8-47 (84)
113 1weu_A Inhibitor of growth fam 42.9 8 0.00027 26.8 1.0 44 152-199 35-85 (91)
114 1wen_A Inhibitor of growth fam 41.7 9 0.00031 25.1 1.1 41 152-199 15-65 (71)
115 2gmg_A Hypothetical protein PF 41.6 4.5 0.00016 28.9 -0.4 25 170-199 69-93 (105)
116 1x63_A Skeletal muscle LIM-pro 41.6 17 0.00056 23.6 2.4 38 154-200 16-53 (82)
117 1x68_A FHL5 protein; four-and- 41.4 14 0.00048 23.7 2.0 39 154-200 6-45 (76)
118 3fyb_A Protein of unknown func 40.7 11 0.00038 26.6 1.5 11 178-188 42-52 (104)
119 2o35_A Hypothetical protein DU 40.7 11 0.00038 26.6 1.5 11 178-188 43-53 (105)
120 1a7i_A QCRP2 (LIM1); LIM domai 39.8 6.2 0.00021 25.8 0.0 27 154-182 8-34 (81)
121 2d8v_A Zinc finger FYVE domain 39.8 11 0.00039 24.5 1.3 30 153-186 8-38 (67)
122 1x4k_A Skeletal muscle LIM-pro 39.5 18 0.00061 22.7 2.3 28 154-182 6-33 (72)
123 2yt5_A Metal-response element- 39.3 9 0.00031 24.3 0.8 47 152-198 5-60 (66)
124 1wyh_A SLIM 2, skeletal muscle 38.7 16 0.00054 23.0 1.9 10 155-164 7-16 (72)
125 2dar_A PDZ and LIM domain prot 38.6 12 0.0004 25.0 1.3 37 153-200 25-61 (90)
126 2xb1_A Pygopus homolog 2, B-ce 38.5 14 0.00049 25.9 1.8 45 154-198 4-60 (105)
127 1x4l_A Skeletal muscle LIM-pro 38.4 14 0.00047 23.4 1.6 38 154-200 6-45 (72)
128 2kwj_A Zinc finger protein DPF 38.4 14 0.0005 26.1 1.9 33 154-186 2-41 (114)
129 2d8y_A Eplin protein; LIM doma 38.4 14 0.00048 24.6 1.7 28 154-183 16-43 (91)
130 1m3v_A FLIN4, fusion of the LI 38.2 31 0.0011 24.3 3.7 47 154-200 33-79 (122)
131 2d8z_A Four and A half LIM dom 37.9 16 0.00056 22.8 1.9 9 155-163 7-15 (70)
132 1v6g_A Actin binding LIM prote 37.6 17 0.00058 23.5 2.0 36 154-200 16-51 (81)
133 3f6q_B LIM and senescent cell 37.4 18 0.0006 22.5 2.0 39 153-200 11-49 (72)
134 1nyp_A Pinch protein; LIM doma 36.0 16 0.00053 22.6 1.5 36 154-200 6-41 (66)
135 2zet_C Melanophilin; complex, 35.9 17 0.00059 27.4 2.0 32 152-183 67-100 (153)
136 1x62_A C-terminal LIM domain p 34.6 13 0.00045 24.1 1.0 37 153-200 15-51 (79)
137 1z60_A TFIIH basal transcripti 33.8 16 0.00054 23.2 1.2 42 154-196 16-58 (59)
138 3ask_A E3 ubiquitin-protein li 33.7 6.5 0.00022 31.9 -0.8 45 155-199 176-225 (226)
139 3t7l_A Zinc finger FYVE domain 33.2 27 0.00093 23.7 2.5 39 148-186 15-54 (90)
140 2d8x_A Protein pinch; LIM doma 32.8 15 0.00053 23.0 1.1 11 154-164 6-16 (70)
141 1g47_A Pinch protein; LIM doma 32.3 22 0.00076 22.6 1.9 39 153-200 11-49 (77)
142 1x64_A Alpha-actinin-2 associa 32.1 20 0.0007 23.7 1.7 38 152-200 24-61 (89)
143 2l4z_A DNA endonuclease RBBP8, 31.3 18 0.0006 26.0 1.3 38 153-200 61-98 (123)
144 2ku3_A Bromodomain-containing 30.5 41 0.0014 21.8 3.0 47 152-198 15-65 (71)
145 1wig_A KIAA1808 protein; LIM d 30.4 21 0.00073 22.7 1.5 9 155-163 33-41 (73)
146 2cur_A Skeletal muscle LIM-pro 29.4 18 0.00061 22.6 1.0 9 155-163 7-15 (69)
147 1vfy_A Phosphatidylinositol-3- 29.4 17 0.00057 23.7 0.8 29 154-184 12-43 (73)
148 3vhs_A ATPase wrnip1; zinc fin 28.6 11 0.00038 19.9 -0.1 8 192-199 8-15 (29)
149 3mjh_B Early endosome antigen 28.3 14 0.00048 20.8 0.2 8 192-199 7-14 (34)
150 1x6a_A LIMK-2, LIM domain kina 27.9 20 0.00068 23.1 1.0 33 155-187 43-75 (81)
151 1weo_A Cellulose synthase, cat 27.0 1.1E+02 0.0039 21.0 4.7 48 152-199 15-67 (93)
152 2l3k_A Rhombotin-2, linker, LI 26.7 21 0.0007 25.3 1.0 34 154-188 37-70 (123)
153 1zfo_A LAsp-1; LIM domain, zin 26.7 13 0.00043 20.1 -0.1 28 154-183 4-31 (31)
154 2cor_A Pinch protein; LIM doma 26.6 24 0.00081 22.9 1.2 36 154-200 16-51 (79)
155 2pv0_B DNA (cytosine-5)-methyl 26.3 43 0.0015 29.1 3.1 34 152-188 92-127 (386)
156 1wem_A Death associated transc 26.1 49 0.0017 21.4 2.7 45 153-198 16-69 (76)
157 2ehe_A Four and A half LIM dom 26.1 27 0.00091 22.5 1.4 38 154-200 16-53 (82)
158 3a1b_A DNA (cytosine-5)-methyl 25.8 39 0.0013 25.7 2.5 34 152-189 78-114 (159)
159 2dlo_A Thyroid receptor-intera 25.0 23 0.0008 22.8 0.9 9 155-163 17-25 (81)
160 2cuq_A Four and A half LIM dom 24.8 29 0.00099 22.2 1.4 26 154-182 16-41 (80)
161 2cup_A Skeletal muscle LIM-pro 24.8 36 0.0012 22.8 1.9 43 154-200 34-76 (101)
162 1dvp_A HRS, hepatocyte growth 24.5 18 0.00061 28.6 0.3 34 152-185 160-194 (220)
163 1j2o_A FLIN2, fusion of rhombo 24.4 31 0.0011 24.0 1.6 34 154-188 31-65 (114)
164 4gne_A Histone-lysine N-methyl 23.9 26 0.00089 24.8 1.1 40 152-197 14-60 (107)
165 2l43_A N-teminal domain from h 23.4 31 0.0011 23.3 1.4 47 152-198 24-74 (88)
166 1wfk_A Zinc finger, FYVE domai 23.4 21 0.00072 24.2 0.5 31 153-185 9-42 (88)
167 1y02_A CARP2, FYVE-ring finger 23.3 19 0.00065 26.1 0.2 35 152-186 18-53 (120)
168 2jne_A Hypothetical protein YF 23.1 29 0.00099 24.4 1.1 39 154-200 33-71 (101)
169 1b8t_A Protein (CRP1); LIM dom 22.0 34 0.0011 26.1 1.5 10 155-164 117-126 (192)
170 1x3h_A Leupaxin; paxillin fami 21.9 28 0.00095 22.3 0.8 26 154-182 16-41 (80)
171 2egq_A FHL1 protein; LIM domai 21.6 35 0.0012 21.6 1.3 39 154-200 16-56 (77)
172 3mpx_A FYVE, rhogef and PH dom 21.6 20 0.00067 30.9 0.0 48 152-199 374-429 (434)
173 2iyb_E Testin, TESS, TES; LIM 21.6 35 0.0012 21.0 1.3 38 154-200 3-42 (65)
174 3zyq_A Hepatocyte growth facto 20.3 43 0.0015 26.6 1.8 34 152-185 163-197 (226)
175 3c6w_A P28ING5, inhibitor of g 20.2 9 0.00031 24.1 -1.9 39 153-198 9-57 (59)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.59 E-value=6.2e-16 Score=99.78 Aligned_cols=50 Identities=36% Similarity=0.955 Sum_probs=45.8
Q ss_pred CccccccccccccCCCceEEcc-CCCcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMP-CSHIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp-C~H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
++..|+||++.+..++.+..+| |+|.||..||.+|++++.+||+||++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3578999999998888889998 9999999999999999999999999874
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.58 E-value=6.9e-16 Score=110.16 Aligned_cols=50 Identities=34% Similarity=0.922 Sum_probs=46.2
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
....|+||++.|..+..++.+||+|.||..||.+|++.+.+||+||.+++
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 45789999999988888999999999999999999999999999999874
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=104.59 Aligned_cols=50 Identities=32% Similarity=0.865 Sum_probs=46.0
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
....|+||++.|..+..++.+||+|.||..||.+|++.+.+||+||+++.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 45789999999988888899999999999999999999999999999873
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=2.8e-15 Score=101.14 Aligned_cols=49 Identities=39% Similarity=1.120 Sum_probs=45.4
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
....|+||++.|..+..++.+||+|.||..||.+|++.+.+||+||.++
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 4578999999998888899999999999999999999999999999876
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-15 Score=101.53 Aligned_cols=49 Identities=35% Similarity=0.996 Sum_probs=45.3
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
....|+||++.+..+..++.+||+|.||..||.+|++.+.+||+||+++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 4578999999998888888899999999999999999989999999886
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.51 E-value=9.5e-15 Score=94.03 Aligned_cols=50 Identities=36% Similarity=0.724 Sum_probs=43.8
Q ss_pred CccccccccccccCC-CceEEccCCCcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEG-SKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~-~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
+...|+||++.+..+ ..++.+||+|.||..||.+|++.+.+||+||.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 457899999999643 35778999999999999999998899999999875
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=6.8e-15 Score=101.51 Aligned_cols=49 Identities=37% Similarity=0.962 Sum_probs=45.2
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
....|+||++.|..+..+..+||+|.||..||.+|++.+.+||+||.++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 4579999999998877888899999999999999999999999999876
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=9e-15 Score=102.26 Aligned_cols=50 Identities=26% Similarity=0.670 Sum_probs=40.4
Q ss_pred Ccccccccccccc-----------CCCceEEcc-CCCcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 152 SQQYCVICLEVMK-----------EGSKAARMP-CSHIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~-----------~~~~~~~Lp-C~H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
.+..|+||++.|. .++.++.+| |+|.||..||.+||+.+.+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 4466777777774 344466666 9999999999999999999999999863
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.45 E-value=6.3e-14 Score=103.08 Aligned_cols=49 Identities=29% Similarity=0.666 Sum_probs=42.2
Q ss_pred CccccccccccccCCC---------------ceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGS---------------KAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~---------------~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..+.|+||++.|.... .++.++|+|.||..||.+||..+.+||+||+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 4678999999987431 356789999999999999999999999999875
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.6e-14 Score=93.50 Aligned_cols=50 Identities=30% Similarity=0.700 Sum_probs=43.1
Q ss_pred CccccccccccccCC----CceEEccCCCcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEG----SKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~----~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
....|+||++.+... ..+..++|+|.||..||.+|++.+.+||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 457899999999642 33478999999999999999999999999999873
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.42 E-value=1e-13 Score=102.15 Aligned_cols=49 Identities=31% Similarity=0.685 Sum_probs=40.3
Q ss_pred CccccccccccccCCC---------------ceEEccCCCcccHHHHHHHH-----hcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGS---------------KAARMPCSHIYHQDCLVNWL-----KNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~---------------~~~~LpC~H~FH~~CI~~WL-----~~~~~CPlCR~~l 200 (201)
.+..|+||++.|..+. .++.+||+|.||..||.+|+ ..+.+||+||..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 3468999999996543 34478999999999999999 4567999999865
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.42 E-value=6.9e-14 Score=94.44 Aligned_cols=49 Identities=33% Similarity=0.783 Sum_probs=42.7
Q ss_pred CccccccccccccC----CCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKE----GSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~----~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
+...|+||++.+.. +..++.++|+|.||..||.+|++.+.+||+||.++
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCcc
Confidence 45789999999964 24458899999999999999999999999999876
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.40 E-value=9.9e-14 Score=91.59 Aligned_cols=48 Identities=31% Similarity=0.713 Sum_probs=41.9
Q ss_pred ccccccccccccCC----CceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEG----SKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~----~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...|+||++.+... ..+..++|||.||..||.+|++.+.+||+||.++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 46899999999642 3457899999999999999999999999999876
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=93.27 Aligned_cols=46 Identities=26% Similarity=0.652 Sum_probs=42.0
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
....|+||++.+ ..++.+||+|.||..||.+|+..+..||+||..+
T Consensus 14 ~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 14 TVPECAICLQTC---VHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SCCBCSSSSSBC---SSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCCCccCCccc---CCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 457899999999 5678899999999999999999999999999886
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.40 E-value=1.4e-13 Score=92.36 Aligned_cols=47 Identities=30% Similarity=0.872 Sum_probs=41.5
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
.+..|+||++.+. +.++.+||+|.||..||.+|++.+.+||+||.++
T Consensus 4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 3578999999995 3357899999999999999999999999999876
No 16
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.35 E-value=3.4e-13 Score=103.08 Aligned_cols=44 Identities=32% Similarity=0.893 Sum_probs=41.0
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+||++.+ ..++.+||||.||..||..|+..+.+||+||.++
T Consensus 54 ~~C~iC~~~~---~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBC---SSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCccc---CCceECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 5799999999 5678899999999999999999999999999886
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.4e-13 Score=90.72 Aligned_cols=46 Identities=26% Similarity=0.668 Sum_probs=40.6
Q ss_pred CccccccccccccCCCceEEc-cCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARM-PCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~L-pC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
....|+||++.+. .++.+ +|+|.||..||.+|++.+..||+||..+
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 14 PYILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp GGGSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 4578999999994 45565 9999999999999999999999999876
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.9e-13 Score=91.82 Aligned_cols=46 Identities=17% Similarity=0.561 Sum_probs=41.6
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
....|+||++.+ ..++.+||+|.||..||.+|++....||+||.++
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAF---QNPVVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBC---CSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCCcCCCchh---cCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 456899999999 5677899999999999999999999999999876
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=1.5e-13 Score=102.69 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=1.5
Q ss_pred CCccccccccccccCC-------------C--ceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 151 CSQQYCVICLEVMKEG-------------S--KAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 151 ~~~~~C~ICle~~~~~-------------~--~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...+.|+||++.|... + .+..++|+|.||..||.+||+.+.+||+||+++
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CCC--------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 3567999999999642 1 233368999999999999999999999999874
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.9e-13 Score=92.18 Aligned_cols=49 Identities=29% Similarity=0.598 Sum_probs=42.3
Q ss_pred CccccccccccccCCCc-eEEccCCCcccHHHHHHHHhcC---CCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSK-AARMPCSHIYHQDCLVNWLKNS---SLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~-~~~LpC~H~FH~~CI~~WL~~~---~~CPlCR~~l 200 (201)
....|+||++.|..+.. ++.+||+|.||..||.+|++.+ ..||+||..+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 45789999999965443 8889999999999999999875 7999999865
No 21
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=5.3e-13 Score=93.33 Aligned_cols=49 Identities=39% Similarity=0.852 Sum_probs=41.3
Q ss_pred CccccccccccccCCCceEEccCC-----CcccHHHHHHHHhcC--CCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCS-----HIYHQDCLVNWLKNS--SLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~-----H~FH~~CI~~WL~~~--~~CPlCR~~l~ 201 (201)
.+..|.||++++..+..+ .+||+ |.||..||.+||..+ .+||+||++++
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 457899999999776554 69996 999999999999865 48999998763
No 22
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.3e-13 Score=91.81 Aligned_cols=45 Identities=31% Similarity=0.954 Sum_probs=40.7
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
....|+||++.+.. +.+||+|.||..||.+|+.++.+||+||.++
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 45789999999953 7899999999999999999999999999876
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=88.74 Aligned_cols=46 Identities=26% Similarity=0.728 Sum_probs=40.5
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHh---cCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK---NSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~---~~~~CPlCR~~l 200 (201)
....|+||++.+ ..++.+||+|.||..||.+|++ .+..||+||.++
T Consensus 19 ~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 19 EEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCBCTTTCSBC---SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred cCCEeccCCccc---CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 457899999999 5678889999999999999997 456899999886
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=87.77 Aligned_cols=46 Identities=22% Similarity=0.574 Sum_probs=39.8
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHh-cCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK-NSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~-~~~~CPlCR~~l 200 (201)
....|+||++.+. .+..++|||.||..||.+|+. .+..||+||.++
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 14 DKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred cCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 4578999999994 555689999999999999994 567999999886
No 25
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.29 E-value=1.5e-12 Score=94.24 Aligned_cols=45 Identities=33% Similarity=0.775 Sum_probs=40.3
Q ss_pred ccccccccccccCCCceEE-ccCCCcccHHHHHHHHhcC-CCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAAR-MPCSHIYHQDCLVNWLKNS-SLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~-LpC~H~FH~~CI~~WL~~~-~~CPlCR~~l 200 (201)
...|+||++.+ ..++. ++|||.||..||.+|+..+ ..||+||.++
T Consensus 22 ~~~C~IC~~~~---~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 22 VFRCFICMEKL---RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp HTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCccCCccc---cCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 36899999999 46777 9999999999999999977 6999999876
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.29 E-value=2e-12 Score=89.01 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=41.3
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc-CCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN-SSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~-~~~CPlCR~~l 200 (201)
+...|+||++.+ ..++.+||||.||..||.+|+.. +.+||+||.++
T Consensus 7 ~~~~C~IC~~~~---~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 7 EYFRCPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSSSCTTTSCCC---SSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred ccCCCCCccccc---cCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 457899999999 56788999999999999999986 77999999876
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=89.18 Aligned_cols=46 Identities=30% Similarity=0.783 Sum_probs=40.4
Q ss_pred CccccccccccccCCCceEEcc-CCCcccHHHHHHHHhcC--CCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMP-CSHIYHQDCLVNWLKNS--SLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp-C~H~FH~~CI~~WL~~~--~~CPlCR~~l 200 (201)
....|+||++.+ ..++.+| |+|.||..||.+|+..+ ..||+||.++
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGGSCSSSCCCC---TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCcCCChHH---hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 457899999999 5677899 99999999999999865 6899999874
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.25 E-value=3.8e-12 Score=91.58 Aligned_cols=45 Identities=31% Similarity=0.690 Sum_probs=40.1
Q ss_pred ccccccccccccCCCceEEc-cCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARM-PCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~L-pC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...|+||++.+ ..++.+ ||||.||..||.+|+..+..||+||..+
T Consensus 22 ~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 22 LLRCGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp HTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccCChhh---CCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 46899999999 456666 8999999999999999989999999876
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=4.6e-12 Score=87.84 Aligned_cols=46 Identities=26% Similarity=0.738 Sum_probs=40.6
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc------CCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN------SSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~------~~~CPlCR~~l 200 (201)
....|+||++.+ ..+..+||+|.||..||..|+.. ...||+||.++
T Consensus 18 ~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 18 EEVTCPICLELL---KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTTSCTTTCSCC---SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred cCCCCcCCChhh---CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 457899999999 45668999999999999999987 67899999876
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.23 E-value=5.6e-12 Score=92.18 Aligned_cols=45 Identities=31% Similarity=0.845 Sum_probs=40.3
Q ss_pred ccccccccccccCCCceEEc-cCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARM-PCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~L-pC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...|+||++.+ ..++.+ ||||.||..||..|+..+..||+||..+
T Consensus 15 ~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 15 HLMCVLCGGYF---IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp GTBCTTTSSBC---SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred cCCCccCChHH---hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 47899999999 456666 9999999999999999999999999876
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.23 E-value=5.1e-12 Score=94.56 Aligned_cols=45 Identities=29% Similarity=0.717 Sum_probs=40.0
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhcCC-CCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS-LCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~-~CPlCR~~l 200 (201)
...|+||++.+ ..++.+||||.||..||..|+..+. .||+||.++
T Consensus 52 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 52 TFQCICCQELV---FRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp HTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCcCChHH---cCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 46899999999 5778899999999999999998544 899999876
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.22 E-value=1.4e-12 Score=89.69 Aligned_cols=46 Identities=28% Similarity=0.712 Sum_probs=40.2
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc-------CCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN-------SSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~-------~~~CPlCR~~l 200 (201)
....|+||++.+ ..++.+||||.||..||.+|+.. ...||+||.++
T Consensus 11 ~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELL---TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEEC---SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred cCCCCcCCCccc---CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 457899999999 45667999999999999999986 56899999876
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.9e-12 Score=82.55 Aligned_cols=42 Identities=29% Similarity=0.778 Sum_probs=37.1
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHh---cCCCCCCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK---NSSLCPLC 196 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~---~~~~CPlC 196 (201)
....|+||++.+ ..++.+||||.||..||.+|++ ....||+|
T Consensus 19 ~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBC---SSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchh---CCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 457899999999 5677889999999999999998 45689998
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=4.9e-12 Score=87.68 Aligned_cols=46 Identities=35% Similarity=0.829 Sum_probs=40.6
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc------CCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN------SSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~------~~~CPlCR~~l 200 (201)
....|+||++.+ ..+..+||+|.||..||..|+.. ...||+||..+
T Consensus 18 ~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 18 EEVTCPICLELL---TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCTTTCSCC---SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred CCCCCCCCCccc---CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 457899999999 45677899999999999999986 77999999876
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.21 E-value=4.4e-12 Score=94.85 Aligned_cols=49 Identities=33% Similarity=0.783 Sum_probs=42.6
Q ss_pred CccccccccccccC----CCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKE----GSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~----~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
+...|+||++.|.. +..++.++|||.||..||.+|++.+.+||+||+.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcC
Confidence 45789999999964 23458899999999999999999999999999876
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=87.90 Aligned_cols=46 Identities=30% Similarity=0.783 Sum_probs=40.2
Q ss_pred CccccccccccccCCCceEEcc-CCCcccHHHHHHHHhcC--CCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMP-CSHIYHQDCLVNWLKNS--SLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp-C~H~FH~~CI~~WL~~~--~~CPlCR~~l 200 (201)
....|+||++.| ..++.+| |||.||..||..|+..+ ..||+||.++
T Consensus 12 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIM---TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEEC---SSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhh---cCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 457899999999 5678899 99999999999999743 5899999875
No 37
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=9.8e-12 Score=85.60 Aligned_cols=47 Identities=21% Similarity=0.607 Sum_probs=39.8
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhcC--CCCCCCCccCC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNS--SLCPLCRFQLS 201 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~--~~CPlCR~~l~ 201 (201)
...|+||.+.+..+. +...|+|.||..||.+||+.+ .+||+||.+++
T Consensus 15 i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 478999999997553 334799999999999999977 79999998763
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=2.2e-11 Score=80.99 Aligned_cols=48 Identities=23% Similarity=0.424 Sum_probs=38.6
Q ss_pred ccccccccc-cccCCCc-eEEccCCCcccHHHHHHHHhc-CCCCCCCCccC
Q 042704 153 QQYCVICLE-VMKEGSK-AARMPCSHIYHQDCLVNWLKN-SSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle-~~~~~~~-~~~LpC~H~FH~~CI~~WL~~-~~~CPlCR~~l 200 (201)
+..|+||++ .+..... ...++|||.||..||.+|+.+ +..||+||.++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 468999999 7764432 246899999999999999764 46899999876
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=80.00 Aligned_cols=42 Identities=29% Similarity=0.911 Sum_probs=36.0
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHH---hcCCCCCCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWL---KNSSLCPLC 196 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL---~~~~~CPlC 196 (201)
....|+||++.+. .++.+||+|.||..||.+|+ .++..||+|
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4578999999994 55679999999999999995 456789998
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.15 E-value=1.8e-11 Score=91.47 Aligned_cols=50 Identities=32% Similarity=0.774 Sum_probs=43.0
Q ss_pred CccccccccccccC----CCceEEccCCCcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKE----GSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~----~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
+...|+||++.+.. +..++.++|||.||..||.+|++.+.+||+||..+.
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 46789999999964 233478899999999999999999999999999863
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=1.7e-11 Score=89.66 Aligned_cols=44 Identities=32% Similarity=0.864 Sum_probs=38.6
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCC---CCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS---LCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~---~CPlCR~~l 200 (201)
..|+||++.+ ..+..+||||.||..||.+|+..+. .||+||..+
T Consensus 22 ~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 22 LECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp TSCSSSCCCC---SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCcccChhh---cCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 5899999999 4556789999999999999998654 899999876
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.13 E-value=2.9e-11 Score=94.67 Aligned_cols=45 Identities=33% Similarity=0.862 Sum_probs=39.2
Q ss_pred ccccccccccccCCCceEEc-cCCCcccHHHHHHHHhc-CCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARM-PCSHIYHQDCLVNWLKN-SSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~L-pC~H~FH~~CI~~WL~~-~~~CPlCR~~l 200 (201)
...|+||++.|. .++.+ ||||.||..||.+|+.. +..||+||.++
T Consensus 54 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 458999999994 45555 99999999999999986 77899999876
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.13 E-value=3.6e-11 Score=93.33 Aligned_cols=45 Identities=33% Similarity=0.699 Sum_probs=40.2
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhcCC-CCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS-LCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~-~CPlCR~~l 200 (201)
...|+||++.+ ..++.+||+|.||..||..|+.... .||+||..+
T Consensus 78 ~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 78 SFMCVCCQELV---YQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123 (150)
T ss_dssp HTBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCEeecCChhh---cCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccC
Confidence 46899999999 5677899999999999999998655 899999876
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.12 E-value=2.7e-11 Score=89.99 Aligned_cols=46 Identities=28% Similarity=0.725 Sum_probs=40.7
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCC-CCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS-LCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~-~CPlCR~~l 200 (201)
....|+||++.+ ..++.++|||.||..||.+|+..+. .||+||.++
T Consensus 17 ~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 17 SKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp GGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCcCChhh---cCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 457899999999 5677899999999999999998665 999999876
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.11 E-value=5.4e-11 Score=83.72 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=43.0
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
....|+||++.+ ..++.+||||.|++.||.+|+..+.+||+||.++.
T Consensus 13 ~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLM---TDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred hheECcccCchh---cCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 467999999999 68889999999999999999998899999998763
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.11 E-value=4e-11 Score=88.56 Aligned_cols=45 Identities=29% Similarity=0.808 Sum_probs=40.4
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhc-CCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN-SSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~-~~~CPlCR~~l 200 (201)
...|+||++.+ ..++.+||||.||..||.+|+.. +.+||+||.++
T Consensus 23 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 23 SISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68 (116)
T ss_dssp HTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCCCcHh---cCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCC
Confidence 46899999999 56778999999999999999986 67999999876
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.10 E-value=1.3e-11 Score=91.02 Aligned_cols=46 Identities=30% Similarity=0.819 Sum_probs=40.6
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc-CCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN-SSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~-~~~CPlCR~~l 200 (201)
.+..|+||++.+ ..++.+||||.||..||.+|+.. +..||+||..+
T Consensus 14 ~~~~C~iC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 14 SECQCGICMEIL---VEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHHBCTTTCSBC---SSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCccCCccc---CceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 357899999999 56788999999999999999976 66899999875
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.07 E-value=6.3e-11 Score=79.03 Aligned_cols=46 Identities=24% Similarity=0.511 Sum_probs=39.8
Q ss_pred CccccccccccccCCCceEEc--cCCCc-ccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARM--PCSHI-YHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~L--pC~H~-FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
++..|.||++.. ..+..+ ||||. |+..|+.+|++.+..||+||+++
T Consensus 7 ~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 7 AIEPCVICQGRP---KNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GGSCCTTTSSSC---SCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CcCCCCcCCCCC---CCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 457899999998 445555 99999 89999999999889999999976
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.07 E-value=7.6e-11 Score=85.57 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=43.0
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
....|+||++.+ ..++.+||||.|++.||.+|+..+.+||+||.++.
T Consensus 28 ~~~~CpI~~~~m---~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLM---TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBC---SSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred HhhCCcCccCcc---cCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 467999999999 68889999999999999999998899999998863
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.04 E-value=1.4e-10 Score=83.84 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=42.9
Q ss_pred CccccccccccccCCCceEEccCC-CcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCS-HIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~-H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
....|+||++.+ ..++.+||| |.|++.||.+||..+.+||+||.++.
T Consensus 21 ~~~~CpI~~~~m---~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred HhcCCcCccccc---cCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 467999999999 688899999 99999999999998889999998763
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.00 E-value=2.5e-10 Score=100.89 Aligned_cols=44 Identities=34% Similarity=0.884 Sum_probs=40.6
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHh-cCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK-NSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~-~~~~CPlCR~~l 200 (201)
..|+||++.+ ..++.+||||.||..|+..|+. .+.+||+||.++
T Consensus 333 ~~C~ICle~~---~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 333 QLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SBCTTTSSSB---CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCccCcCC---CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 6899999999 5788899999999999999998 788999999876
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.97 E-value=9.4e-11 Score=90.06 Aligned_cols=46 Identities=24% Similarity=0.584 Sum_probs=40.2
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCC-CCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS-LCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~-~CPlCR~~l 200 (201)
....|+||++.+ ..++.++|||.||..||.+|+.... .||+||.++
T Consensus 30 ~~~~C~IC~~~~---~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVL---RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhh---cCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 457899999999 5678899999999999999998665 899999864
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.97 E-value=2.8e-10 Score=75.64 Aligned_cols=45 Identities=18% Similarity=0.475 Sum_probs=39.1
Q ss_pred ccccccccccccCCCceEEc--cCCCc-ccHHHHHHHHhcCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARM--PCSHI-YHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~L--pC~H~-FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...|.||++.. ..+..+ ||||. |+..|+.+|.+.+..||+||+++
T Consensus 7 ~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 7 LKPCSLCEKRP---RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GSBCTTTSSSB---SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CCCCcccCCcC---CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 46899999988 344455 99998 99999999998888999999986
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=7.9e-11 Score=76.36 Aligned_cols=43 Identities=26% Similarity=0.551 Sum_probs=37.0
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
+...|+||++.|. .++.|||+|.||..||.+| ...||+||+++
T Consensus 5 ~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~ 47 (56)
T 1bor_A 5 QFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47 (56)
T ss_dssp CCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSS
T ss_pred cCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEe
Confidence 4578999999994 5678999999999999883 56899999876
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.94 E-value=2.5e-10 Score=78.07 Aligned_cols=40 Identities=25% Similarity=0.714 Sum_probs=36.6
Q ss_pred cccccccccccCCCceEEccCCCc-ccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHI-YHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~-FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+||++.+ ..++.+||||. ||..|+.+| ..||+||.++
T Consensus 25 ~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i 65 (74)
T 4ic3_A 25 KLCKICMDRN---IAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVI 65 (74)
T ss_dssp TBCTTTSSSB---CCEEEETTCCBCCCHHHHTTC----SBCTTTCCBC
T ss_pred CCCCCCCCCC---CCEEEcCCCChhHHHHhhhcC----ccCCCcCcCc
Confidence 6899999999 67888999999 999999998 7899999876
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.94 E-value=4.6e-10 Score=77.87 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=37.7
Q ss_pred CccccccccccccCCCceEEc--cCCCcccHHHHHHHHh-cCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARM--PCSHIYHQDCLVNWLK-NSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~L--pC~H~FH~~CI~~WL~-~~~~CPlCR~~l 200 (201)
++..|+||++.+...+ +..+ +|||.||..|+.+++. ....||+||+++
T Consensus 10 ~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred cCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4578999999885432 3344 4999999999999985 456899999876
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=1.7e-10 Score=85.52 Aligned_cols=43 Identities=21% Similarity=0.680 Sum_probs=38.3
Q ss_pred ccccccccccccCCCceEEc-cCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARM-PCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~L-pC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...|+||++.| ..++.+ ||||.||..||..|+. ..||+||..+
T Consensus 22 ~~~C~IC~~~~---~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~ 65 (117)
T 1jm7_B 22 LLRCSRCTNIL---REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPA 65 (117)
T ss_dssp TTSCSSSCSCC---SSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBC
T ss_pred CCCCCCCChHh---hCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcC
Confidence 36899999999 566777 9999999999999997 7899999875
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=1.2e-09 Score=91.02 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=41.6
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcC-CCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNS-SLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~-~~CPlCR~~l~ 201 (201)
....|+||++.+ ..++.+||||.|++.||.+|+..+ .+||+||.+++
T Consensus 207 ~~~~c~i~~~~~---~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBC---SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHh---cCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 568999999999 688899999999999999999854 45999998863
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.85 E-value=1.2e-09 Score=85.83 Aligned_cols=46 Identities=28% Similarity=0.721 Sum_probs=40.4
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcC-CCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNS-SLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~-~~CPlCR~~l 200 (201)
+...|+||++.+ ..++.++|||.||..||.+|+..+ .+||+||..+
T Consensus 17 ~~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 17 SKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (170)
T ss_dssp GGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCChhh---cCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCc
Confidence 457999999999 567789999999999999999754 4999999876
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=77.27 Aligned_cols=45 Identities=31% Similarity=0.665 Sum_probs=38.8
Q ss_pred CccccccccccccCCCceEEcc-CCCcccHHHHHHHHhcC------CCCCC--CCcc
Q 042704 152 SQQYCVICLEVMKEGSKAARMP-CSHIYHQDCLVNWLKNS------SLCPL--CRFQ 199 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp-C~H~FH~~CI~~WL~~~------~~CPl--CR~~ 199 (201)
....|+||++.| ..++.+| |||.|++.||.+|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~---~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEM---KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBC---SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchh---cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 457899999999 6788896 99999999999999753 48999 9854
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.79 E-value=3.5e-09 Score=69.81 Aligned_cols=48 Identities=25% Similarity=0.616 Sum_probs=37.4
Q ss_pred CCccccccccccccCCCceEEccCC--C---cccHHHHHHHHh--cCCCCCCCCccCC
Q 042704 151 CSQQYCVICLEVMKEGSKAARMPCS--H---IYHQDCLVNWLK--NSSLCPLCRFQLS 201 (201)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~--H---~FH~~CI~~WL~--~~~~CPlCR~~l~ 201 (201)
.+...|.||+++.. . ...+||. + .||..|+.+|+. ++.+||+||+++.
T Consensus 4 ~~~~~CrIC~~~~~--~-~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--N-ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--C-CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--C-ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 35678999999842 2 3468964 4 899999999996 4678999998763
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.78 E-value=1.1e-08 Score=81.62 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=41.5
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcC-CCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNS-SLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~-~~CPlCR~~l~ 201 (201)
....|+||++.+ ..++.+||||.|++.||.+|+..+ .+||+||.+++
T Consensus 105 ~~f~CPI~~elm---~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCccccC---CCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 568999999999 678899999999999999999864 47999998763
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=4e-09 Score=72.12 Aligned_cols=40 Identities=25% Similarity=0.727 Sum_probs=34.8
Q ss_pred cccccccccccCCCceEEccCCCc-ccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHI-YHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~-FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+||++.+ ..++.+||+|. ||..|+.+ ...||+||.++
T Consensus 26 ~~C~IC~~~~---~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i 66 (75)
T 2ecg_A 26 KLCKICMDRN---IAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVI 66 (75)
T ss_dssp HSCSSSCSSC---CCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBC
T ss_pred CCCCcCCCCC---CCEEEecCCCHHHHHHHhhC----CCCCccCCcee
Confidence 5799999998 56778999999 99999964 37899999876
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.69 E-value=2.4e-09 Score=92.94 Aligned_cols=49 Identities=29% Similarity=0.713 Sum_probs=38.1
Q ss_pred CccccccccccccC-CCceE----EccCCCcccHHHHHHHHhcC-----------CCCCCCCccC
Q 042704 152 SQQYCVICLEVMKE-GSKAA----RMPCSHIYHQDCLVNWLKNS-----------SLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~-~~~~~----~LpC~H~FH~~CI~~WL~~~-----------~~CPlCR~~l 200 (201)
...+|+||++.+.. |..+. ..+|+|.||..||.+||+.. .+||.||+++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 45689999999986 33221 14699999999999999742 4699999876
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.3e-08 Score=68.59 Aligned_cols=42 Identities=26% Similarity=0.685 Sum_probs=36.7
Q ss_pred CccccccccccccCCCceEEccCCCc-ccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHI-YHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~-FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
+...|.||++.. ..++.+||+|. |+..|+.. ...||+||.++
T Consensus 14 ~~~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i 56 (68)
T 2ea5_A 14 NSKDCVVCQNGT---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFV 56 (68)
T ss_dssp CSSCCSSSSSSC---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCC
T ss_pred CCCCCCCcCcCC---CCEEEECCCChhhhHHHHhc----CCCCCCCCcch
Confidence 457899999998 57888999999 99999984 47899999876
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.64 E-value=7.8e-09 Score=71.64 Aligned_cols=40 Identities=28% Similarity=0.774 Sum_probs=35.7
Q ss_pred cccccccccccCCCceEEccCCCc-ccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHI-YHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~-FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|.||++.+ ..++.+||||. |+..|+..| ..||+||.++
T Consensus 19 ~~C~IC~~~~---~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i 59 (79)
T 2yho_A 19 MLCMVCCEEE---INSTFCPCGHTVCCESCAAQL----QSCPVCRSRV 59 (79)
T ss_dssp TBCTTTSSSB---CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBC
T ss_pred CEeEEeCccc---CcEEEECCCCHHHHHHHHHhc----CcCCCCCchh
Confidence 5899999998 67888999999 999999877 3899999876
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=2.8e-08 Score=70.64 Aligned_cols=48 Identities=23% Similarity=0.490 Sum_probs=37.5
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc--------CCCCCC--CCcc
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN--------SSLCPL--CRFQ 199 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~--------~~~CPl--CR~~ 199 (201)
....|+||++++.........+|+|.||..|+.+++.. ...||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35689999999965433344579999999999999862 237999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.51 E-value=5.4e-08 Score=64.21 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=39.9
Q ss_pred cccccccccccCCCceEEc-cCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARM-PCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~L-pC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+||++.+ ..++.+ +|||.|.+.||.+|+..+.+||+.+.+|
T Consensus 4 ~~CpIs~~~m---~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L 48 (61)
T 2bay_A 4 MLCAISGKVP---RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 48 (61)
T ss_dssp CCCTTTCSCC---SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBC
T ss_pred EEecCCCCCC---CCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCC
Confidence 6799999999 567777 8999999999999999888999999876
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.47 E-value=3.3e-08 Score=86.25 Aligned_cols=42 Identities=26% Similarity=0.776 Sum_probs=37.5
Q ss_pred CccccccccccccCCCceEEccCCCc-ccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHI-YHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~-FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
....|+||++.+ ..++.+||||. ||..|+.+| ..||+||.++
T Consensus 294 ~~~~C~IC~~~~---~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i 336 (345)
T 3t6p_A 294 EERTCKVCMDKE---VSVVFIPCGHLVVCQECAPSL----RKCPICRGII 336 (345)
T ss_dssp TTCBCTTTSSSB---CCEEEETTCCEEECTTTGGGC----SBCTTTCCBC
T ss_pred CCCCCCccCCcC---CceEEcCCCChhHhHHHHhcC----CcCCCCCCCc
Confidence 346899999999 67888999999 999999988 6899999876
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.1e-07 Score=79.89 Aligned_cols=46 Identities=22% Similarity=0.495 Sum_probs=38.6
Q ss_pred CccccccccccccCCCceEE-ccCCCcccHHHHHHHHhcC--CCCCC--CCccC
Q 042704 152 SQQYCVICLEVMKEGSKAAR-MPCSHIYHQDCLVNWLKNS--SLCPL--CRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~-LpC~H~FH~~CI~~WL~~~--~~CPl--CR~~l 200 (201)
....|+||++.| ..++. +.|||.|++.||.+|+..+ ..||+ ||..+
T Consensus 180 ~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 180 IELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp CCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred eeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 456899999999 45555 5899999999999999754 47999 99865
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.17 E-value=1.3e-06 Score=62.86 Aligned_cols=44 Identities=27% Similarity=0.677 Sum_probs=37.0
Q ss_pred ccccccccccCCCceEEccCCCcccHHHHHHHHh-cCCCCCCCCccC
Q 042704 155 YCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK-NSSLCPLCRFQL 200 (201)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~-~~~~CPlCR~~l 200 (201)
.|.+|---+. ...+.+||+|+|+.+|+..|.+ +.++||.||.++
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCee
Confidence 4777877665 5778899999999999999985 567999999876
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.88 E-value=4.9e-06 Score=68.94 Aligned_cols=47 Identities=21% Similarity=0.612 Sum_probs=38.1
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhcCC--CCCCCCccCC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS--LCPLCRFQLS 201 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~--~CPlCR~~l~ 201 (201)
-..|.||.+....|. +.-.|+|.||..|+.+|++.+. .||.|+.++|
T Consensus 180 i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 468999999997552 2333999999999999998654 8999998764
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.54 E-value=0.013 Score=41.38 Aligned_cols=45 Identities=31% Similarity=0.703 Sum_probs=37.8
Q ss_pred CccccccccccccCCCceEEccC-CCcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPC-SHIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC-~H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
+-..|-.|.-..+ ..+.| .|.+|..|+...|..+..||+|..+||
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 4578999998773 14456 699999999999999999999999886
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.26 E-value=0.03 Score=39.31 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=25.5
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHH
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNW 186 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~W 186 (201)
+..|.||.+.+.......-++|+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4689999987532222333999999999999983
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.21 E-value=0.095 Score=36.25 Aligned_cols=31 Identities=26% Similarity=0.738 Sum_probs=23.2
Q ss_pred CccccccccccccCCCceEEcc---CCCcccHHHHHHH
Q 042704 152 SQQYCVICLEVMKEGSKAARMP---CSHIYHQDCLVNW 186 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp---C~H~FH~~CI~~W 186 (201)
.+..|.||-..- .++ .+| |+-+||..|+.+.
T Consensus 14 ~D~~C~VC~~~t-~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWT-AES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCC-SSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccccc-ccc---eeccccccccccHhhcccc
Confidence 568999986432 222 455 7899999999997
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.32 E-value=0.11 Score=34.22 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=32.0
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcC----CCCCCCCcc
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNS----SLCPLCRFQ 199 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~----~~CPlCR~~ 199 (201)
....|.||.+. ++.+.--.|...||..|+.+.|..- =.||.|+..
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34679999753 3433334589999999999887643 279999753
No 77
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.86 E-value=0.37 Score=46.93 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=41.5
Q ss_pred CccccccccccccCCCceEEccCC-CcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCS-HIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~-H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
+...|+|-++.+ ..++.+|-| +.|-+.+|.+||..+.+||+=|.++
T Consensus 890 ~~F~cPIs~~lM---~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L 936 (968)
T 3m62_A 890 DEFLDPLMYTIM---KDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPL 936 (968)
T ss_dssp GGGBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred HHhCCcchhhHH---hCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCC
Confidence 467899999999 788999997 5899999999999999999988876
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.78 E-value=0.29 Score=31.39 Aligned_cols=47 Identities=28% Similarity=0.572 Sum_probs=31.8
Q ss_pred CCCccccccccccccCCCceEEccCCCcccHHHHHHHHhc----CCCCCCCCcc
Q 042704 150 GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN----SSLCPLCRFQ 199 (201)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~----~~~CPlCR~~ 199 (201)
...+..|.+|... +..+..-.|...||..|+..-+.. .-.||.|+..
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3356789999873 333333348889999999875532 2379999753
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=83.90 E-value=0.23 Score=31.91 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=30.8
Q ss_pred CCccccccccccccCCCceEEccCCCcccHHHHHHHHhc----CCCCCCCCcc
Q 042704 151 CSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN----SSLCPLCRFQ 199 (201)
Q Consensus 151 ~~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~----~~~CPlCR~~ 199 (201)
..+..|.||.+. |..+..-.|...||..|+.+-|.. .-.||.|+..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 356789999863 333333347888999999865442 2269999764
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.91 E-value=0.57 Score=28.63 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=28.5
Q ss_pred ccccccccccCCCceEEccCCCcccHHHHHHHHhc----CCCCCCCCc
Q 042704 155 YCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN----SSLCPLCRF 198 (201)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~----~~~CPlCR~ 198 (201)
.|.||...-..+..+.--.|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888865433333333458889999999754432 226999975
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=73.07 E-value=0.76 Score=30.41 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=30.1
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHh----cCCCCCCCCcc
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK----NSSLCPLCRFQ 199 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~----~~~~CPlCR~~ 199 (201)
...|.||......+.-+..=-|.-.||..|+..-+. ..-.||.|+..
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 456999988753211222223788899999975443 23479999754
No 82
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=72.67 E-value=1.3 Score=30.66 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=31.8
Q ss_pred CCCccccccccccccCCCceEEccCCCcccHHHHHHHHhc----CCCCCCCCc
Q 042704 150 GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN----SSLCPLCRF 198 (201)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~----~~~CPlCR~ 198 (201)
+..+..|.+|... |+.+..-.|.-.||..|+.+=|.. .-.||.|+.
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 3356789999964 343333447888999999776543 226999974
No 83
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.37 E-value=0.45 Score=30.53 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=31.4
Q ss_pred CccccccccccccCCCceEE-ccCCCcccHHHHHHHHh-----cCCCCCCCCcc
Q 042704 152 SQQYCVICLEVMKEGSKAAR-MPCSHIYHQDCLVNWLK-----NSSLCPLCRFQ 199 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~-LpC~H~FH~~CI~~WL~-----~~~~CPlCR~~ 199 (201)
....|+||...+..+...+. -.|..-||..|+.--.. ....||.|+.+
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35679999988854333222 34788899999854321 34579999643
No 84
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=72.16 E-value=3.3 Score=30.76 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=24.3
Q ss_pred Ccccccccccccc--CCCceEEccCCCcccHHHHH
Q 042704 152 SQQYCVICLEVMK--EGSKAARMPCSHIYHQDCLV 184 (201)
Q Consensus 152 ~~~~C~ICle~~~--~~~~~~~LpC~H~FH~~CI~ 184 (201)
+...|.+|...|. .+......-|+|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 5689999999983 23344556699999988853
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=68.06 E-value=1.4 Score=31.24 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=26.1
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHh
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK 188 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~ 188 (201)
.+..|.||.+.=..++.+.--.|...||..|+...+.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 4678999987642222244456899999999987654
No 86
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=67.31 E-value=5.5 Score=24.30 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=27.4
Q ss_pred ccccccccccCCCceEE-c-cCCCcccHHHHHHH----HhcCCCCCCCC
Q 042704 155 YCVICLEVMKEGSKAAR-M-PCSHIYHQDCLVNW----LKNSSLCPLCR 197 (201)
Q Consensus 155 ~C~ICle~~~~~~~~~~-L-pC~H~FH~~CI~~W----L~~~~~CPlCR 197 (201)
.|.+|...+..+...+. - .|.--||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 46788887754443333 2 47778999998421 13567899986
No 87
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=66.59 E-value=6.8 Score=29.41 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=32.3
Q ss_pred CCCccccccccccccCCCceEEccCCCcccHHHHHHHHh-----------cCCCCCCCCcc
Q 042704 150 GCSQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK-----------NSSLCPLCRFQ 199 (201)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~-----------~~~~CPlCR~~ 199 (201)
+..+..|.+|-+.= +.+..=.|...||..||.+=+. ..=.||+|+..
T Consensus 60 Dg~~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 33568999998742 3333335889999999997653 12279999753
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.86 E-value=0.33 Score=30.48 Aligned_cols=44 Identities=34% Similarity=0.761 Sum_probs=29.6
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc----CCCCCCCCc
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN----SSLCPLCRF 198 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~----~~~CPlCR~ 198 (201)
.+..|.+|... +..+..-.|...||..|+.+=|.. .-.||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45789999874 343333458889999999865432 225888754
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=65.83 E-value=7.7 Score=27.52 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=22.0
Q ss_pred ccccccccccc------cCCCceEEccCCCcccHHHHH
Q 042704 153 QQYCVICLEVM------KEGSKAARMPCSHIYHQDCLV 184 (201)
Q Consensus 153 ~~~C~ICle~~------~~~~~~~~LpC~H~FH~~CI~ 184 (201)
...|.+|+..- ..+..+.--.|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 36799998753 122334445589999999995
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=65.47 E-value=0.47 Score=30.84 Aligned_cols=44 Identities=23% Similarity=0.542 Sum_probs=29.4
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc----CCCCCCCCc
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN----SSLCPLCRF 198 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~----~~~CPlCR~ 198 (201)
.+..|.||... |..+..=.|...||..|+.+-|.. .-.||.|+.
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 46789999864 343333448889999999864432 225888853
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=64.49 E-value=0.59 Score=29.70 Aligned_cols=44 Identities=34% Similarity=0.761 Sum_probs=29.4
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc----CCCCCCCCc
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN----SSLCPLCRF 198 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~----~~~CPlCR~ 198 (201)
.+..|.+|... |..+..-.|...||..|+.+=+.. .-.||.|+.
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 45789999874 343333458889999999864432 225888753
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=61.82 E-value=2.1 Score=30.61 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=28.7
Q ss_pred cccccccccc-cCCCceEEccCCCcccHHHHHHHHhc----CCCCCCCCc
Q 042704 154 QYCVICLEVM-KEGSKAARMPCSHIYHQDCLVNWLKN----SSLCPLCRF 198 (201)
Q Consensus 154 ~~C~ICle~~-~~~~~~~~LpC~H~FH~~CI~~WL~~----~~~CPlCR~ 198 (201)
..|.||...- ..+..+.--.|...||..|+.+-|.. .=.||.||.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688888642 22222222348899999999765542 237999985
No 93
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=59.38 E-value=2.2 Score=29.87 Aligned_cols=44 Identities=27% Similarity=0.449 Sum_probs=28.5
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHh---cCCCCCCCCc
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK---NSSLCPLCRF 198 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~---~~~~CPlCR~ 198 (201)
..| ||-.....+.-+..=-|.-.||..|+..=+. ..-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 7877664444333344888999999965332 2347999974
No 94
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=58.76 E-value=1.7 Score=28.55 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=26.7
Q ss_pred ccccccccccCCCceEEccCCCcccHHHHHHHHhc-----CCCCCCCCcc
Q 042704 155 YCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN-----SSLCPLCRFQ 199 (201)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~-----~~~CPlCR~~ 199 (201)
.|.||...-..+..+.-=.|...||..|+.+=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 46677753222222212237889999999854432 3379999764
No 95
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=57.75 E-value=9.7 Score=33.10 Aligned_cols=46 Identities=20% Similarity=0.486 Sum_probs=31.7
Q ss_pred ccccccccccccCCCceEEccCCCc--ccHHHHHHHHhcC--CCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHI--YHQDCLVNWLKNS--SLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~--FH~~CI~~WL~~~--~~CPlCR~~l 200 (201)
...|++=..-+. ..++-..|.|. |-..-+.....+. -.||+|.+.+
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 367998877774 45556779998 7765555554433 3799998765
No 96
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=57.30 E-value=9.9 Score=32.89 Aligned_cols=46 Identities=13% Similarity=0.427 Sum_probs=32.2
Q ss_pred ccccccccccccCCCceEEccCCCc--ccHHHHHHHHhcC--CCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHI--YHQDCLVNWLKNS--SLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~--FH~~CI~~WL~~~--~~CPlCR~~l 200 (201)
...|+|=..-+. ..++-..|.|. |-..-+.....+. -.||+|.+.+
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 357998877774 45556779998 8766665555433 3799998765
No 97
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.19 E-value=2 Score=28.89 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=28.5
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhc-----CCCCCCCCc
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN-----SSLCPLCRF 198 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~-----~~~CPlCR~ 198 (201)
-.|.||...-..+..+.-=.|...||..|+.+=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 467888864323332222348899999999854431 236999975
No 98
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.15 E-value=4.7 Score=26.04 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=23.3
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+.|-+.+..++.+. .-+..||..|+ .|..|+.+|
T Consensus 10 ~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L 46 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTL 46 (76)
T ss_dssp CBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBC
T ss_pred CCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCcc
Confidence 56888888776444333 34667777774 566676654
No 99
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.93 E-value=8.8 Score=25.42 Aligned_cols=46 Identities=20% Similarity=0.424 Sum_probs=28.7
Q ss_pred ccccccccccccCCCc-eEEccCCCcccHHHHHHHHh-----cCCCCCCCCcc
Q 042704 153 QQYCVICLEVMKEGSK-AARMPCSHIYHQDCLVNWLK-----NSSLCPLCRFQ 199 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~-~~~LpC~H~FH~~CI~~WL~-----~~~~CPlCR~~ 199 (201)
...| ||...+..+.. +..--|..-||..|+.--.. ....||.|+..
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 3566 89887742222 22234888899999942211 34589999754
No 100
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=55.72 E-value=1.5 Score=29.50 Aligned_cols=44 Identities=25% Similarity=0.471 Sum_probs=25.8
Q ss_pred ccccccccccCCCceEEccCCCcccHHHHHHHHhc----C-CCCCCCCc
Q 042704 155 YCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN----S-SLCPLCRF 198 (201)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~----~-~~CPlCR~ 198 (201)
.|.||...-..+..+.-=.|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666654322211111237888999999865542 2 36999985
No 101
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.21 E-value=5.5 Score=26.29 Aligned_cols=38 Identities=26% Similarity=0.632 Sum_probs=26.4
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...|+-|-+.+..+..+..+ +..||..|+ .|-.|+..|
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~--~~~wH~~CF--------~C~~C~~~L 52 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLAL--DKQWHVSCF--------KCQTCSVIL 52 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEET--TEEECTTTC--------BCSSSCCBC
T ss_pred CCCCcCcCCeeCCCeEEEEC--CcccccccC--------CcCcCCCCc
Confidence 46799998888655544443 677888884 677777655
No 102
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=54.73 E-value=3.5 Score=26.71 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=24.0
Q ss_pred ccccccccccccCCCceEEccCCCcccH-HHHHHHHhcCCCCCCCCc
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQ-DCLVNWLKNSSLCPLCRF 198 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~-~CI~~WL~~~~~CPlCR~ 198 (201)
-..|..|...+..+... ..=+..|+. .|..+-+ ...|--|..
T Consensus 27 CF~C~~C~~~L~~~~~~--~~~g~~yC~~~cy~~~f--~~~C~~C~~ 69 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGHA--EHEGKPYCNHPCYSAMF--GPKGFGRGG 69 (76)
T ss_dssp TCBCTTTCCBCCTTTEE--EETTEEEETTTHHHHHS--SCCCSSCCC
T ss_pred CCCccccCccCCCCceE--CcCCeEeeCHHHHHHHh--CccCCCcCC
Confidence 35788888877654322 223566777 4765543 345666643
No 103
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=51.13 E-value=2.8 Score=22.71 Aligned_cols=11 Identities=36% Similarity=0.990 Sum_probs=7.6
Q ss_pred CCCCCCCccCC
Q 042704 191 SLCPLCRFQLS 201 (201)
Q Consensus 191 ~~CPlCR~~l~ 201 (201)
..||+|+..+|
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 46888887654
No 104
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=47.85 E-value=18 Score=26.64 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=29.3
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHH------h-----cCCCCCCCCc
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWL------K-----NSSLCPLCRF 198 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL------~-----~~~~CPlCR~ 198 (201)
.+..|.||-+- |+.+..=.|-..||..||.+-+ + ..=.|++|+.
T Consensus 56 ~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 56779999864 2222222478999999999752 1 1237999974
No 105
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.47 E-value=8.2 Score=25.45 Aligned_cols=39 Identities=23% Similarity=0.612 Sum_probs=26.2
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
....|..|-..+..++.+. .-+..||..|+ .|-.|+..|
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L 52 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATL 52 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBC
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCc
Confidence 4468999998875444433 34778998884 566676554
No 106
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=46.25 E-value=17 Score=23.27 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=22.8
Q ss_pred ccccccccccccCCCceEE-c-cCCCcccHHHH
Q 042704 153 QQYCVICLEVMKEGSKAAR-M-PCSHIYHQDCL 183 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~-L-pC~H~FH~~CI 183 (201)
...|.+|...+..+...+. - .|.--||..|+
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 4679999999865544333 3 58888999998
No 107
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.05 E-value=0.98 Score=31.39 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=29.3
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc----CCCCCCCCc
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN----SSLCPLCRF 198 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~----~~~CPlCR~ 198 (201)
....|.||...-..+..+..=-|...||..|+.+=|.. .=.||.|+.
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 44679999876532222323348889999999754432 225888853
No 108
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=45.58 E-value=8.3 Score=25.95 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=26.0
Q ss_pred cccCCCccccccccccccCCC-ceEEccCCCcccHHHHHH
Q 042704 147 AIEGCSQQYCVICLEVMKEGS-KAARMPCSHIYHQDCLVN 185 (201)
Q Consensus 147 ~~~~~~~~~C~ICle~~~~~~-~~~~LpC~H~FH~~CI~~ 185 (201)
++++.+...|.+|...|..-. .--.-.||.+|+..|-..
T Consensus 15 W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 345556678999999995321 111134899999999654
No 109
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.10 E-value=7.9 Score=28.19 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=26.0
Q ss_pred CcccCCCccccccccccccCCC-ceEEccCCCcccHHHHHH
Q 042704 146 PAIEGCSQQYCVICLEVMKEGS-KAARMPCSHIYHQDCLVN 185 (201)
Q Consensus 146 p~~~~~~~~~C~ICle~~~~~~-~~~~LpC~H~FH~~CI~~ 185 (201)
.+.++.....|.+|...|..-. .--.-.||++||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3444445578999999995321 111234899999999654
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=44.40 E-value=32 Score=23.41 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=27.8
Q ss_pred CccccccccccccCCCceEEcc--CCCcccHHHHHHHHh
Q 042704 152 SQQYCVICLEVMKEGSKAARMP--CSHIYHQDCLVNWLK 188 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp--C~H~FH~~CI~~WL~ 188 (201)
....|.+|.+-+++.. .++-| =.|.||-.|-+..++
T Consensus 14 a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHH
T ss_pred CeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHH
Confidence 3468999999997544 34545 379999999998887
No 111
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=44.36 E-value=7 Score=26.20 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=24.4
Q ss_pred cccCCCccccccccccccCCC-ceEEccCCCcccHHHHHH
Q 042704 147 AIEGCSQQYCVICLEVMKEGS-KAARMPCSHIYHQDCLVN 185 (201)
Q Consensus 147 ~~~~~~~~~C~ICle~~~~~~-~~~~LpC~H~FH~~CI~~ 185 (201)
++++.+...|.+|...|..-. .--.-.||.+|+..|...
T Consensus 13 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp --CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 344445578999999995321 111134899999999654
No 112
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.31 E-value=8 Score=25.99 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=25.1
Q ss_pred cccCCCccccccccccccCCCceEE---ccCCCcccHHHHHH
Q 042704 147 AIEGCSQQYCVICLEVMKEGSKAAR---MPCSHIYHQDCLVN 185 (201)
Q Consensus 147 ~~~~~~~~~C~ICle~~~~~~~~~~---LpC~H~FH~~CI~~ 185 (201)
++++.....|.+|...|.. ..++ -.||.+|+..|-..
T Consensus 8 W~pd~~~~~C~~C~~~F~~--~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 8 RYPTNNFGNCTGCSATFSV--LKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCSCCCCSSCSSSCCCCCS--SSCCEECSSSCCEECTTTSCE
T ss_pred cccCCCCCcCcCcCCcccc--chhhhhhcCCCcEEChhhcCC
Confidence 3445556789999999942 2222 34899999999643
No 113
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.92 E-value=8 Score=26.76 Aligned_cols=44 Identities=30% Similarity=0.708 Sum_probs=26.4
Q ss_pred CccccccccccccCCCceEEcc--CC-CcccHHHHHHHHh----cCCCCCCCCcc
Q 042704 152 SQQYCVICLEVMKEGSKAARMP--CS-HIYHQDCLVNWLK----NSSLCPLCRFQ 199 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp--C~-H~FH~~CI~~WL~----~~~~CPlCR~~ 199 (201)
....| ||..... |.-+..=- |. ..||..|+. |. ..-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 34567 9988652 32111112 44 579999996 33 23479999764
No 114
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=41.69 E-value=9 Score=25.08 Aligned_cols=41 Identities=32% Similarity=0.816 Sum_probs=26.3
Q ss_pred CccccccccccccCCCceEEcc-----CC-CcccHHHHHHHHh----cCCCCCCCCcc
Q 042704 152 SQQYCVICLEVMKEGSKAARMP-----CS-HIYHQDCLVNWLK----NSSLCPLCRFQ 199 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp-----C~-H~FH~~CI~~WL~----~~~~CPlCR~~ 199 (201)
....| ||..... |. .+- |. ..||..|+. |. ..-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g~---MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE---MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SS---EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CC---EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34567 8988642 32 333 44 579999997 43 23379999764
No 115
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=41.62 E-value=4.5 Score=28.87 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=16.2
Q ss_pred EEccCCCcccHHHHHHHHhcCCCCCCCCcc
Q 042704 170 ARMPCSHIYHQDCLVNWLKNSSLCPLCRFQ 199 (201)
Q Consensus 170 ~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~ 199 (201)
....||+.| ..=+.....||.|+.+
T Consensus 69 ~C~~CG~~F-----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVF-----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBC-----CCCSSCCSSCSSSCCC
T ss_pred ChhhCcCee-----cccCCCCCCCcCCCCC
Confidence 346688888 1222345689999875
No 116
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.57 E-value=17 Score=23.57 Aligned_cols=38 Identities=21% Similarity=0.619 Sum_probs=22.0
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+.|-+.+..++.+ ...-+..||..|+ .|-.|+.+|
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L 53 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDCF--------TCSNCKQVI 53 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTTC--------CCSSSCCCC
T ss_pred CcCccCCcccccCceE-EEECccccccccC--------chhhCCCcc
Confidence 4677777777543332 2223666777764 566666554
No 117
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.44 E-value=14 Score=23.68 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=21.9
Q ss_pred cccccccccccC-CCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKE-GSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~-~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+.|-+.+.. |.......-+..||..|+ .|-.|+.+|
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L 45 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSL 45 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcC
Confidence 467777777653 111222334667887774 566665554
No 118
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.73 E-value=11 Score=26.57 Aligned_cols=11 Identities=36% Similarity=1.232 Sum_probs=10.1
Q ss_pred ccHHHHHHHHh
Q 042704 178 YHQDCLVNWLK 188 (201)
Q Consensus 178 FH~~CI~~WL~ 188 (201)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999986
No 119
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=40.71 E-value=11 Score=26.62 Aligned_cols=11 Identities=36% Similarity=1.292 Sum_probs=10.1
Q ss_pred ccHHHHHHHHh
Q 042704 178 YHQDCLVNWLK 188 (201)
Q Consensus 178 FH~~CI~~WL~ 188 (201)
||+.|+.+|..
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999985
No 120
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=39.81 E-value=6.2 Score=25.80 Aligned_cols=27 Identities=15% Similarity=0.349 Sum_probs=11.7
Q ss_pred cccccccccccCCCceEEccCCCcccHHH
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDC 182 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~C 182 (201)
..|+.|-+.+..++.+ ..-+..||..|
T Consensus 8 ~~C~~C~~~I~~~~~~--~a~~~~~H~~C 34 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEV--QCDGRSFHRCC 34 (81)
T ss_dssp CBCSSSCCBCSSTTEE--EETTEEEESSS
T ss_pred CcCcCcCccccCceeE--EeCCccccccc
Confidence 3455555555333322 12344455544
No 121
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=39.77 E-value=11 Score=24.52 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=24.3
Q ss_pred ccccccccccccCCCceEEccC-CCcccHHHHHHH
Q 042704 153 QQYCVICLEVMKEGSKAARMPC-SHIYHQDCLVNW 186 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC-~H~FH~~CI~~W 186 (201)
..-|.||.++- .++.+.| +-.|+..|+...
T Consensus 8 ~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 35699999994 5788889 788999998765
No 122
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.53 E-value=18 Score=22.69 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=12.5
Q ss_pred cccccccccccCCCceEEccCCCcccHHH
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDC 182 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~C 182 (201)
..|+.|-+.+..++.+ ...-+..||..|
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C 33 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRK-MEYKGSSWHETC 33 (72)
T ss_dssp CCBSSSCCCCCSSSCE-EEETTEEEETTT
T ss_pred CCCccCCCcccCCceE-EEECcCeecccC
Confidence 3466666655432211 112345556555
No 123
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=39.34 E-value=9 Score=24.27 Aligned_cols=47 Identities=32% Similarity=0.590 Sum_probs=30.2
Q ss_pred CccccccccccccC--CCceEEccCCCcccHHHHHHHHh-------cCCCCCCCCc
Q 042704 152 SQQYCVICLEVMKE--GSKAARMPCSHIYHQDCLVNWLK-------NSSLCPLCRF 198 (201)
Q Consensus 152 ~~~~C~ICle~~~~--~~~~~~LpC~H~FH~~CI~~WL~-------~~~~CPlCR~ 198 (201)
.+..|.||...... +..+.--.|.-.||..|+.+=+. ..-.||.|+.
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 45789999986432 22232334888999999876331 2236888864
No 124
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.67 E-value=16 Score=22.97 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=5.1
Q ss_pred cccccccccc
Q 042704 155 YCVICLEVMK 164 (201)
Q Consensus 155 ~C~ICle~~~ 164 (201)
.|+-|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1wyh_A 7 GCSACGETVM 16 (72)
T ss_dssp BCSSSCCBCC
T ss_pred CCccCCCccc
Confidence 4555555543
No 125
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.62 E-value=12 Score=25.02 Aligned_cols=37 Identities=19% Similarity=0.553 Sum_probs=21.9
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...|+.|-+.+. +.. ...-+..||..|+ .|-.|+..|
T Consensus 25 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L 61 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPF--LVALGKSWHPEEF--------NCAHCKNTM 61 (90)
T ss_dssp CCBBSSSCCBCC-SCE--EEETTEEECTTTC--------BCSSSCCBC
T ss_pred CCCCccCCCEec-ceE--EEECCccccccCC--------ccCCCCCCC
Confidence 356777777773 222 2234677777774 566666554
No 126
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=38.51 E-value=14 Score=25.92 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=29.6
Q ss_pred cccccccccccCCCceEEc--cCCCcccHHHHHHH------H----hcCCCCCCCCc
Q 042704 154 QYCVICLEVMKEGSKAARM--PCSHIYHQDCLVNW------L----KNSSLCPLCRF 198 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~L--pC~H~FH~~CI~~W------L----~~~~~CPlCR~ 198 (201)
..|.||...+..+.....- .|.--||..|+.-= + .....||.|+.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 5799999998654433332 47888999998411 1 03447999964
No 127
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.45 E-value=14 Score=23.39 Aligned_cols=38 Identities=26% Similarity=0.563 Sum_probs=19.8
Q ss_pred cccccccccccC--CCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKE--GSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~--~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+-|-+.+.. +..+ ...-+..||..|+ .|-.|+..|
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L 45 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSL 45 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBC
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcC
Confidence 457777766643 1122 2224566776663 466665544
No 128
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=38.45 E-value=14 Score=26.14 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=22.1
Q ss_pred ccccccccccc----C---CCceEEccCCCcccHHHHHHH
Q 042704 154 QYCVICLEVMK----E---GSKAARMPCSHIYHQDCLVNW 186 (201)
Q Consensus 154 ~~C~ICle~~~----~---~~~~~~LpC~H~FH~~CI~~W 186 (201)
..|.+|+..-. . +..+.--.|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987542 1 223334458999999998754
No 129
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.37 E-value=14 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.587 Sum_probs=14.3
Q ss_pred cccccccccccCCCceEEccCCCcccHHHH
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCL 183 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI 183 (201)
..|+-|-+.+..++.+ ..-+..||..|+
T Consensus 16 ~~C~~C~~~I~~~~~v--~a~~~~~H~~CF 43 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LANQQVFHISCF 43 (91)
T ss_dssp CBCTTTCCBCCTTSEE--ECSSSEEETTTC
T ss_pred CcCccCCCccCCceeE--EECCCEECCCCC
Confidence 4566666666433322 234555666553
No 130
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.20 E-value=31 Score=24.30 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=26.0
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|..|-..+..........=+..|+..|..+-+.....|-.|..+|
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I 79 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMG 79 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCS
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCc
Confidence 45777766663100111122355677777777665444677777655
No 131
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.86 E-value=16 Score=22.81 Aligned_cols=9 Identities=33% Similarity=0.752 Sum_probs=4.3
Q ss_pred ccccccccc
Q 042704 155 YCVICLEVM 163 (201)
Q Consensus 155 ~C~ICle~~ 163 (201)
.|+.|-+.+
T Consensus 7 ~C~~C~~~I 15 (70)
T 2d8z_A 7 GCVQCKKPI 15 (70)
T ss_dssp BCSSSCCBC
T ss_pred CCcccCCee
Confidence 455555444
No 132
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.60 E-value=17 Score=23.54 Aligned_cols=36 Identities=28% Similarity=0.867 Sum_probs=22.2
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+.|-+.+. +..+. .-+..||..|+ .|-.|+.+|
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~CF--------~C~~C~~~L 51 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDCF--------VCAVCRLPF 51 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTTS--------SCSSSCCCC
T ss_pred CcCccccCEec-cceEE--ECCceeCccCC--------ccccCCCCC
Confidence 46888888775 23222 34677887774 566666554
No 133
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=37.42 E-value=18 Score=22.53 Aligned_cols=39 Identities=23% Similarity=0.593 Sum_probs=25.6
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...|+-|-..+..++.+.. .=+..||..|+ .|-.|...|
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L 49 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQF 49 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCC
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCC
Confidence 4678999888865443322 34677888885 577776654
No 134
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=36.03 E-value=16 Score=22.64 Aligned_cols=36 Identities=17% Similarity=0.490 Sum_probs=20.6
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+.|-+.+. +. ....-+..||..|+ .|-.|+.+|
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L 41 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPF 41 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBC
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCC
Confidence 45777777664 22 22334666777663 566665544
No 135
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=35.93 E-value=17 Score=27.43 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=24.9
Q ss_pred Ccccccccccccc--CCCceEEccCCCcccHHHH
Q 042704 152 SQQYCVICLEVMK--EGSKAARMPCSHIYHQDCL 183 (201)
Q Consensus 152 ~~~~C~ICle~~~--~~~~~~~LpC~H~FH~~CI 183 (201)
+...|.+|...|. .+.......|+|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4579999999763 4455566779999999996
No 136
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.64 E-value=13 Score=24.07 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=24.7
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...|.-|-+.+.. . ....-+..||..|+ .|-.|+..|
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCC
Confidence 4679999988753 2 23345778888885 577776543
No 137
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=33.81 E-value=16 Score=23.21 Aligned_cols=42 Identities=21% Similarity=0.609 Sum_probs=27.1
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHH-hcCCCCCCC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWL-KNSSLCPLC 196 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL-~~~~~CPlC 196 (201)
..|--|+..|......+--.|++.|+.+| +..+ ..-+.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 46999999885321122234899999999 3333 244579987
No 138
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=33.69 E-value=6.5 Score=31.85 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=24.8
Q ss_pred ccccccccccCCCceEEccCCCcccHHHHHHHHhc-----CCCCCCCCcc
Q 042704 155 YCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN-----SSLCPLCRFQ 199 (201)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~-----~~~CPlCR~~ 199 (201)
.|.+|...-..+..+..=.|...||..|+.+=|.. .=.||.|+..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 57788764322233333348889999999865432 2369999753
No 139
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=33.24 E-value=27 Score=23.67 Aligned_cols=39 Identities=10% Similarity=0.277 Sum_probs=25.1
Q ss_pred ccCCCccccccccccccCCC-ceEEccCCCcccHHHHHHH
Q 042704 148 IEGCSQQYCVICLEVMKEGS-KAARMPCSHIYHQDCLVNW 186 (201)
Q Consensus 148 ~~~~~~~~C~ICle~~~~~~-~~~~LpC~H~FH~~CI~~W 186 (201)
+++.....|.+|...|..-. ..-.-.||++|+..|....
T Consensus 15 ~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 15 VPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 33334568999999995321 1112348999999997543
No 140
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.85 E-value=15 Score=22.96 Aligned_cols=11 Identities=27% Similarity=0.455 Sum_probs=5.5
Q ss_pred ccccccccccc
Q 042704 154 QYCVICLEVMK 164 (201)
Q Consensus 154 ~~C~ICle~~~ 164 (201)
..|..|-+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (70)
T 2d8x_A 6 SGCHQCGEFII 16 (70)
T ss_dssp SBCSSSCCBCC
T ss_pred CcCccCCCEec
Confidence 34555555543
No 141
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.33 E-value=22 Score=22.57 Aligned_cols=39 Identities=23% Similarity=0.572 Sum_probs=22.8
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...|+-|-+.+..++.+. ..-+..||..|+ .|-.|+.+|
T Consensus 11 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L 49 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQF 49 (77)
T ss_dssp CCBCSSSCCBCCSTTTCE-EETTEEECTTTC--------CCTTTCCCC
T ss_pred CCCchhcCCccCCCceEE-EeCccEeccccC--------eECCCCCCC
Confidence 457888888775433322 123667777774 566666554
No 142
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.13 E-value=20 Score=23.68 Aligned_cols=38 Identities=18% Similarity=0.456 Sum_probs=25.4
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
....|.-|-+.+.. .. ...-+..||..|+ .|-.|+..|
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L 61 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPECF--------VCADCNLNL 61 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTTC--------CCSSSCCCT
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccCC--------EecCCCCCC
Confidence 34579999988753 22 3335778898884 677777655
No 143
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=31.29 E-value=18 Score=25.97 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=26.1
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
...|+-|-..+.... ....-+..||..|+ .|-.|+..|
T Consensus 61 ~~~C~~C~~~I~~~~--~v~a~~~~wH~~CF--------~C~~C~~~L 98 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF--LLYAMDSYWHSRCL--------KCSSCQAQL 98 (123)
T ss_dssp CSBBSSSSSBCCSSS--EEEETTEEEETTTS--------BCTTTCCBG
T ss_pred CCcCcCCCCCcCCcE--EEEeCCcEEccccc--------CcCcCCCcc
Confidence 468999999886332 22335788998884 677777654
No 144
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=30.53 E-value=41 Score=21.80 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=28.6
Q ss_pred Cccccccccccc--cCCCceEEccCCCcccHHHHHHHHh--cCCCCCCCCc
Q 042704 152 SQQYCVICLEVM--KEGSKAARMPCSHIYHQDCLVNWLK--NSSLCPLCRF 198 (201)
Q Consensus 152 ~~~~C~ICle~~--~~~~~~~~LpC~H~FH~~CI~~WL~--~~~~CPlCR~ 198 (201)
....|.||.+.- ..+..+..=.|.-.||..|+..-.. ..=.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 467899998753 2222222234888999999974322 2226887753
No 145
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.36 E-value=21 Score=22.72 Aligned_cols=9 Identities=33% Similarity=0.907 Sum_probs=4.2
Q ss_pred ccccccccc
Q 042704 155 YCVICLEVM 163 (201)
Q Consensus 155 ~C~ICle~~ 163 (201)
.|..|-..+
T Consensus 33 ~C~~C~~~L 41 (73)
T 1wig_A 33 LCVRCGQMF 41 (73)
T ss_dssp CCSSSCCCC
T ss_pred EeCCCCCCC
Confidence 444444444
No 146
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.44 E-value=18 Score=22.60 Aligned_cols=9 Identities=33% Similarity=0.781 Sum_probs=4.4
Q ss_pred ccccccccc
Q 042704 155 YCVICLEVM 163 (201)
Q Consensus 155 ~C~ICle~~ 163 (201)
.|+-|-+.+
T Consensus 7 ~C~~C~~~I 15 (69)
T 2cur_A 7 GCVKCNKAI 15 (69)
T ss_dssp CCSSSCCCC
T ss_pred CCcccCCEe
Confidence 455555444
No 147
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.40 E-value=17 Score=23.67 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=21.1
Q ss_pred cccccccccccCCCceEE---ccCCCcccHHHHH
Q 042704 154 QYCVICLEVMKEGSKAAR---MPCSHIYHQDCLV 184 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~---LpC~H~FH~~CI~ 184 (201)
..|.+|...|.. ..++ -.||.+|+..|-.
T Consensus 12 ~~C~~C~~~F~~--~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSL--LNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBT--TBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCC--ccccccCCCCCEEEcccccC
Confidence 589999999852 2222 3489999999964
No 148
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=28.61 E-value=11 Score=19.91 Aligned_cols=8 Identities=38% Similarity=1.194 Sum_probs=4.2
Q ss_pred CCCCCCcc
Q 042704 192 LCPLCRFQ 199 (201)
Q Consensus 192 ~CPlCR~~ 199 (201)
.||+|.+.
T Consensus 8 qcpvcqq~ 15 (29)
T 3vhs_A 8 QCPVCQQM 15 (29)
T ss_dssp ECTTTCCE
T ss_pred eChHHHHh
Confidence 35666543
No 149
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.26 E-value=14 Score=20.82 Aligned_cols=8 Identities=38% Similarity=1.123 Sum_probs=4.5
Q ss_pred CCCCCCcc
Q 042704 192 LCPLCRFQ 199 (201)
Q Consensus 192 ~CPlCR~~ 199 (201)
.||+|.+.
T Consensus 7 iCP~C~~~ 14 (34)
T 3mjh_B 7 ICPQCMKS 14 (34)
T ss_dssp ECTTTCCE
T ss_pred CCcHHHHH
Confidence 46666543
No 150
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.86 E-value=20 Score=23.13 Aligned_cols=33 Identities=18% Similarity=0.486 Sum_probs=13.1
Q ss_pred ccccccccccCCCceEEccCCCcccHHHHHHHH
Q 042704 155 YCVICLEVMKEGSKAARMPCSHIYHQDCLVNWL 187 (201)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL 187 (201)
.|..|...+..|.......=+..|+..|..+.+
T Consensus 43 ~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 43 ACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp BCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred CccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 455555554332221111223445555554443
No 151
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=27.00 E-value=1.1e+02 Score=20.99 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=33.5
Q ss_pred CccccccccccccCCC----ceEEccCCCcccHHHHHHHHh-cCCCCCCCCcc
Q 042704 152 SQQYCVICLEVMKEGS----KAARMPCSHIYHQDCLVNWLK-NSSLCPLCRFQ 199 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~----~~~~LpC~H~FH~~CI~~WL~-~~~~CPlCR~~ 199 (201)
....|.||=++..... .+....|+--.|+.|+.-=.+ .+..||.|+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktr 67 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTR 67 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCc
Confidence 4578999999865322 233345777789999865544 66789999764
No 152
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=26.68 E-value=21 Score=25.33 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=16.9
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHh
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK 188 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~ 188 (201)
..|..|-..+..|... ...=+..||..|..+.+.
T Consensus 37 F~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp CBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHH
T ss_pred CccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhc
Confidence 4566666666433322 122345566666655543
No 153
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=26.66 E-value=13 Score=20.13 Aligned_cols=28 Identities=18% Similarity=0.483 Sum_probs=17.5
Q ss_pred cccccccccccCCCceEEccCCCcccHHHH
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCL 183 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI 183 (201)
..|+.|-...-..+.+ ..-+..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~--~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKV--NCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCC--CSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeE--EECCeEecccCC
Confidence 4788888765322222 224788999884
No 154
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.59 E-value=24 Score=22.88 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=20.0
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+-|-+.+. +..+ ..-+..||..|+ .|-.|+.+|
T Consensus 16 ~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 2cor_A 16 YICQKCHAIID-EQPL--IFKNDPYHPDHF--------NCANCGKEL 51 (79)
T ss_dssp CBCTTTCCBCC-SCCC--CCSSSCCCTTTS--------BCSSSCCBC
T ss_pred CCCccCCCEec-ceEE--EECcceeCCCCC--------EeCCCCCcc
Confidence 46777777664 2222 223566776663 566665554
No 155
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=26.29 E-value=43 Score=29.15 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=25.7
Q ss_pred CccccccccccccCCCceEEc--cCCCcccHHHHHHHHh
Q 042704 152 SQQYCVICLEVMKEGSKAARM--PCSHIYHQDCLVNWLK 188 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~L--pC~H~FH~~CI~~WL~ 188 (201)
.+..|.+|-+.= +-+..= .|...||..||...+.
T Consensus 92 ~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 92 YQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp SBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTC
T ss_pred CcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcC
Confidence 567899999742 333333 5899999999999984
No 156
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.13 E-value=49 Score=21.36 Aligned_cols=45 Identities=27% Similarity=0.608 Sum_probs=28.3
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHH------H---hcCCCCCCCCc
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNW------L---KNSSLCPLCRF 198 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~W------L---~~~~~CPlCR~ 198 (201)
...| ||...+..+.-+..--|..-||..|+.-- + .....||.|+.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 4567 89887743222222348888999999421 1 24668999964
No 157
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.06 E-value=27 Score=22.55 Aligned_cols=38 Identities=21% Similarity=0.566 Sum_probs=20.1
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+.|-..+..+..+ ...=+..||..|+ .|-.|+.+|
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L 53 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRE-LFYEDRHFHEGCF--------RCCRCQRSL 53 (82)
T ss_dssp CBCTTTCCBCCSSCCB-CCCSSCCCBTTTS--------BCTTTCCBC
T ss_pred CcCccCCCccccCcEE-EEeCCccccccCC--------eecCCCCcc
Confidence 4677777766522221 1113566777664 466665544
No 158
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=25.83 E-value=39 Score=25.71 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=25.4
Q ss_pred CccccccccccccCCCceEEc---cCCCcccHHHHHHHHhc
Q 042704 152 SQQYCVICLEVMKEGSKAARM---PCSHIYHQDCLVNWLKN 189 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~L---pC~H~FH~~CI~~WL~~ 189 (201)
.+..|.||-+. ..+..- .|...|+..||...+..
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 56789999964 344332 48899999999998753
No 159
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.00 E-value=23 Score=22.84 Aligned_cols=9 Identities=22% Similarity=0.767 Sum_probs=4.6
Q ss_pred ccccccccc
Q 042704 155 YCVICLEVM 163 (201)
Q Consensus 155 ~C~ICle~~ 163 (201)
.|+-|-..+
T Consensus 17 ~C~~C~~~I 25 (81)
T 2dlo_A 17 KCATCSQPI 25 (81)
T ss_dssp BCTTTCCBC
T ss_pred ccccCCCee
Confidence 455555544
No 160
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.84 E-value=29 Score=22.21 Aligned_cols=26 Identities=19% Similarity=0.576 Sum_probs=11.7
Q ss_pred cccccccccccCCCceEEccCCCcccHHH
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDC 182 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~C 182 (201)
..|+.|-+.+..+ . +..-+..||..|
T Consensus 16 ~~C~~C~~~I~~~-~--v~a~~~~~H~~C 41 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VTYRDQPWHREC 41 (80)
T ss_dssp CCCTTTCCCCCSC-C--EESSSSEECTTT
T ss_pred CcCCCCCCEecCc-E--EEECCchhhhhh
Confidence 3455555555321 1 222345555555
No 161
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=24.79 E-value=36 Score=22.80 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=22.9
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|..|...+..+.. ...=+..|+..|..+. ....|..|...|
T Consensus 34 F~C~~C~~~L~~~~~--~~~~g~~yC~~cy~~~--~~~~C~~C~~~I 76 (101)
T 2cup_A 34 FRCAKCLHPLANETF--VAKDNKILCNKCTTRE--DSPKCKGCFKAI 76 (101)
T ss_dssp CCCSSSCCCTTSSCC--EEETTEEECHHHHTTC--CCCBCSSSCCBC
T ss_pred CcccccCCCCCcCee--ECcCCEEEChhHhhhh--cCCccccCCCcc
Confidence 467777776643221 1223555666665332 234677776655
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.53 E-value=18 Score=28.56 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=22.8
Q ss_pred CccccccccccccCCC-ceEEccCCCcccHHHHHH
Q 042704 152 SQQYCVICLEVMKEGS-KAARMPCSHIYHQDCLVN 185 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~-~~~~LpC~H~FH~~CI~~ 185 (201)
++..|.+|...|..-. ..-.-.||++||..|-..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4579999999995221 111234899999998643
No 163
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.38 E-value=31 Score=24.01 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=16.6
Q ss_pred cccccccccccC-CCceEEccCCCcccHHHHHHHHh
Q 042704 154 QYCVICLEVMKE-GSKAARMPCSHIYHQDCLVNWLK 188 (201)
Q Consensus 154 ~~C~ICle~~~~-~~~~~~LpC~H~FH~~CI~~WL~ 188 (201)
..|..|...+.. |.. ....=+..|+..|..+-+.
T Consensus 31 F~C~~C~~~L~~~g~~-~~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp CCCSSSCSCCCCSSSC-CCCBTTBCCCHHHHHHHHT
T ss_pred CcccccCCchhcCCCe-eEEECCeeechHHHHHHhC
Confidence 456666666642 111 1111245566666665554
No 164
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=23.93 E-value=26 Score=24.82 Aligned_cols=40 Identities=30% Similarity=0.693 Sum_probs=25.1
Q ss_pred CccccccccccccCCCceEEc---cCCCcccHHHHHHHHhcC----CCCCCCC
Q 042704 152 SQQYCVICLEVMKEGSKAARM---PCSHIYHQDCLVNWLKNS----SLCPLCR 197 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~L---pC~H~FH~~CI~~WL~~~----~~CPlCR 197 (201)
.+..|.+|.+ .| ....= .|...||..|+. |... -.||.|+
T Consensus 14 ~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 14 HEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 4578999983 23 33332 377899999997 5422 2577554
No 165
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=23.45 E-value=31 Score=23.33 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=27.9
Q ss_pred CccccccccccccC-CCc-eEEccCCCcccHHHHHHHHh--cCCCCCCCCc
Q 042704 152 SQQYCVICLEVMKE-GSK-AARMPCSHIYHQDCLVNWLK--NSSLCPLCRF 198 (201)
Q Consensus 152 ~~~~C~ICle~~~~-~~~-~~~LpC~H~FH~~CI~~WL~--~~~~CPlCR~ 198 (201)
.+..|.||...-.. +.. +..-.|.-.||..|+..-+. ..-.||.|+.
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 45789999875311 111 11123778899999975322 2226888754
No 166
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=23.42 E-value=21 Score=24.23 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=21.1
Q ss_pred ccccccccccccCCCceEE---ccCCCcccHHHHHH
Q 042704 153 QQYCVICLEVMKEGSKAAR---MPCSHIYHQDCLVN 185 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~---LpC~H~FH~~CI~~ 185 (201)
...|.+|...|..- .++ -.||.+|+..|...
T Consensus 9 ~~~C~~C~~~F~~~--~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLF--KKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSS--SCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCc--cccccCCCCCCEEChhHcCC
Confidence 45799999998532 222 34888998888643
No 167
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=23.35 E-value=19 Score=26.10 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=22.0
Q ss_pred CccccccccccccCCC-ceEEccCCCcccHHHHHHH
Q 042704 152 SQQYCVICLEVMKEGS-KAARMPCSHIYHQDCLVNW 186 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~-~~~~LpC~H~FH~~CI~~W 186 (201)
....|..|...|..-. .--.-.||.+|+..|-...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCC
Confidence 4568999999984211 1112448999999996544
No 168
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.12 E-value=29 Score=24.37 Aligned_cols=39 Identities=26% Similarity=0.562 Sum_probs=21.8
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|++|..++.-.. ++.++..|-.. +.....||-|.++|
T Consensus 33 ~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBC
T ss_pred ccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHH
Confidence 68999998874211 11123333211 23455799998876
No 169
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=22.01 E-value=34 Score=26.13 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=4.7
Q ss_pred cccccccccc
Q 042704 155 YCVICLEVMK 164 (201)
Q Consensus 155 ~C~ICle~~~ 164 (201)
.|+.|-..+.
T Consensus 117 ~C~~C~~~I~ 126 (192)
T 1b8t_A 117 GCPRCGQAVY 126 (192)
T ss_dssp ECTTTSCEEC
T ss_pred cCCCCCCEec
Confidence 3555554443
No 170
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.88 E-value=28 Score=22.29 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=11.9
Q ss_pred cccccccccccCCCceEEccCCCcccHHH
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDC 182 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~C 182 (201)
..|+.|-+.+.. ..+ ..-+..||..|
T Consensus 16 ~~C~~C~~~I~~-~~v--~a~~~~~H~~C 41 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYL--SAMDTVWHPEC 41 (80)
T ss_dssp CBCTTTCCBCCS-SCE--EETTEEECTTT
T ss_pred CccccCCCeecc-eeE--EECCCeEecCc
Confidence 346666655542 122 12245555555
No 171
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.62 E-value=35 Score=21.60 Aligned_cols=39 Identities=21% Similarity=0.520 Sum_probs=24.6
Q ss_pred cccccccccccC-C-CceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKE-G-SKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~-~-~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+-|-..+.. | .......=+..||..|+ .|-.|+.+|
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF--------~C~~C~~~L 56 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF--------HCKKCSVNL 56 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTTC--------BCSSSCCBC
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcccC--------EehhcCCCC
Confidence 578888888763 1 11222334778898884 677777665
No 172
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.58 E-value=20 Score=30.87 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred CccccccccccccCCC-ceEEccCCCcccHHHHHHHHh-------cCCCCCCCCcc
Q 042704 152 SQQYCVICLEVMKEGS-KAARMPCSHIYHQDCLVNWLK-------NSSLCPLCRFQ 199 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~-~~~~LpC~H~FH~~CI~~WL~-------~~~~CPlCR~~ 199 (201)
....|.+|...|..-. ..-.-.||++||..|-..... ....|-.|-..
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp --------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 4578999999984211 111234899999999876542 12357766443
No 173
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=21.58 E-value=35 Score=21.00 Aligned_cols=38 Identities=21% Similarity=0.500 Sum_probs=21.4
Q ss_pred cccccccccccCCCceEEccCCCccc--HHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYH--QDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH--~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+-|-+.+..++.. ...-+..|| .+|+ .|-.|+.+|
T Consensus 3 ~~C~~C~~~I~~~~~~-v~a~~~~wH~~~~CF--------~C~~C~~~L 42 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQR-VTYNNFSWHASTECF--------LCSCCSKCL 42 (65)
T ss_dssp EECTTTSSEECTTSCE-EEETTEEEETTTTTS--------BCTTTCCBC
T ss_pred CCCcCCCCeeccCceE-EEECCCccCCCCCCE--------ECCCCCCcC
Confidence 3577777777542221 222366777 7774 566665554
No 174
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.30 E-value=43 Score=26.58 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=23.1
Q ss_pred CccccccccccccCCC-ceEEccCCCcccHHHHHH
Q 042704 152 SQQYCVICLEVMKEGS-KAARMPCSHIYHQDCLVN 185 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~-~~~~LpC~H~FH~~CI~~ 185 (201)
+...|.+|...|..-. ..-.-.||.+||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4578999999995321 111234899999999654
No 175
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=20.21 E-value=9 Score=24.10 Aligned_cols=39 Identities=31% Similarity=0.810 Sum_probs=24.6
Q ss_pred ccccccccccccCCCceEEcc-----CC-CcccHHHHHHHHhc----CCCCCCCCc
Q 042704 153 QQYCVICLEVMKEGSKAARMP-----CS-HIYHQDCLVNWLKN----SSLCPLCRF 198 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~Lp-----C~-H~FH~~CI~~WL~~----~~~CPlCR~ 198 (201)
...| ||.... .|. .+- |. ..||..|+. |.. .-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~---mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGE---MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSE---EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCC---eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3556 898864 232 333 44 589999997 332 337988864
Done!