Query 042704
Match_columns 201
No_of_seqs 190 out of 1956
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 15:06:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042704.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042704hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iyma_ g.44.1.1 (A:) EL5 RING 99.7 6.4E-18 4.7E-22 108.8 3.5 49 152-200 4-53 (55)
2 d1chca_ g.44.1.1 (A:) Immediat 99.6 7.2E-16 5.2E-20 103.0 3.9 47 152-200 4-50 (68)
3 d3dplr1 g.44.1.1 (R:19-106) RI 99.5 9.5E-15 6.9E-19 102.2 5.2 49 152-200 20-83 (88)
4 d1ur6b_ g.44.1.1 (B:) Not-4 N- 99.5 9.2E-15 6.7E-19 92.6 2.5 47 155-201 2-50 (52)
5 d1fbva4 g.44.1.1 (A:356-434) C 99.4 4E-14 2.9E-18 97.1 5.2 44 154-200 24-68 (79)
6 d1g25a_ g.44.1.1 (A:) TFIIH Ma 99.4 7.8E-14 5.7E-18 92.1 4.8 49 152-200 2-53 (65)
7 d1v87a_ g.44.1.1 (A:) Deltex p 99.4 1.2E-13 8.7E-18 100.5 4.8 49 152-200 24-92 (114)
8 d2baya1 g.44.1.2 (A:1-56) Pre- 99.3 3.1E-13 2.2E-17 86.7 3.0 43 155-200 2-45 (56)
9 d1rmda2 g.44.1.1 (A:1-86) V(D) 99.3 1.6E-12 1.1E-16 90.5 4.6 45 153-200 23-68 (86)
10 d1jm7a_ g.44.1.1 (A:) brca1 RI 99.2 1.6E-12 1.1E-16 93.0 3.5 44 154-200 22-68 (103)
11 d1bora_ g.44.1.1 (A:) Acute pr 99.2 3.6E-13 2.6E-17 86.5 -0.0 43 153-201 6-48 (56)
12 d1vyxa_ g.44.1.3 (A:) IE1B pro 99.2 5.9E-12 4.3E-16 81.5 3.8 48 150-200 3-57 (60)
13 d2c2la2 g.44.1.2 (A:225-304) S 99.1 2.7E-11 2E-15 82.6 4.5 46 152-200 6-52 (80)
14 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 99.1 5.7E-11 4.2E-15 80.5 4.6 46 152-200 7-53 (78)
15 d1jm7b_ g.44.1.1 (B:) bard1 RI 99.0 2.8E-11 2E-15 85.4 0.7 42 154-200 23-65 (97)
16 d1wgma_ g.44.1.2 (A:) Ubiquiti 98.8 1.3E-09 9.2E-14 77.1 4.5 46 152-200 21-67 (98)
17 d1wima_ g.44.1.1 (A:) UbcM4-in 98.5 1.4E-08 9.9E-13 70.6 2.8 46 152-197 4-57 (94)
18 d1f62a_ g.50.1.2 (A:) Williams 91.4 0.04 2.9E-06 32.5 1.8 44 155-198 2-49 (51)
19 d1wila_ g.50.1.3 (A:) Hypothet 90.5 0.063 4.6E-06 35.3 2.2 31 152-186 14-47 (89)
20 d1fp0a1 g.50.1.2 (A:19-88) Nuc 83.8 0.17 1.2E-05 31.8 1.1 42 154-198 8-53 (70)
21 d1mm2a_ g.50.1.2 (A:) Mi2-beta 83.5 0.1 7.3E-06 32.0 -0.1 45 152-199 8-56 (61)
22 d1we9a_ g.50.1.2 (A:) PHD fing 69.9 0.97 7.1E-05 27.3 1.7 48 152-199 5-58 (64)
23 d1z60a1 g.49.1.2 (A:328-386) T 67.1 1.1 8.4E-05 27.1 1.5 43 153-196 15-58 (59)
24 d1wema_ g.50.1.2 (A:) Death as 66.8 1.5 0.00011 27.2 2.2 45 153-198 16-69 (76)
25 d1wepa_ g.50.1.2 (A:) PHD fing 65.4 3.7 0.00027 25.7 4.0 45 154-199 13-63 (79)
26 d1zbdb_ g.50.1.1 (B:) Effector 63.8 2.9 0.00021 28.6 3.5 32 152-183 47-80 (124)
27 d2cs3a1 g.44.1.3 (A:8-87) Prot 57.8 11 0.00078 23.5 5.0 35 153-188 8-44 (80)
28 d2co8a2 g.39.1.3 (A:8-43) Nedd 52.5 1.8 0.00013 23.6 0.5 29 152-183 7-36 (36)
29 d1wesa_ g.50.1.2 (A:) PHD Inhi 52.1 3 0.00022 25.9 1.6 41 154-199 17-65 (71)
30 d2o35a1 a.293.1.1 (A:2-80) Hyp 45.6 4.1 0.0003 25.8 1.5 11 178-188 40-50 (79)
31 d2d8ya1 g.39.1.3 (A:9-43) Epli 45.1 2.9 0.00021 22.5 0.6 28 153-183 7-35 (35)
32 d1wewa_ g.50.1.2 (A:) Sumoylat 42.6 9 0.00066 23.6 2.9 44 153-198 16-71 (78)
33 d2jnea1 g.41.18.1 (A:1-71) Hyp 40.9 5.5 0.0004 24.8 1.5 38 154-200 3-41 (71)
34 d2dloa1 g.39.1.3 (A:8-42) Thyr 38.1 3 0.00022 22.4 -0.1 28 153-183 8-35 (35)
35 d1v6ga1 g.39.1.3 (A:1-41) Acti 36.2 4.8 0.00035 22.3 0.6 27 153-182 15-41 (41)
36 d1joca1 g.50.1.1 (A:1348-1411) 35.0 5.5 0.0004 23.9 0.8 35 152-186 7-42 (64)
37 d1weva_ g.50.1.2 (A:) PHD fing 33.1 7.4 0.00054 24.5 1.2 46 153-198 16-71 (88)
38 d1x6aa1 g.39.1.3 (A:8-41) Lim 32.6 6.8 0.00049 20.7 0.8 27 153-182 8-34 (34)
39 d2d8va1 g.43.1.1 (A:8-61) Zinc 30.4 9.7 0.0007 22.3 1.3 27 156-186 4-31 (54)
40 d1rutx3 g.39.1.3 (X:83-113) LI 30.0 8 0.00058 20.1 0.8 29 154-183 3-31 (31)
41 d1weoa_ g.44.1.1 (A:) Cellulos 29.7 46 0.0033 21.2 4.7 50 150-199 13-67 (93)
42 d1y02a2 g.50.1.1 (A:20-70) Rif 26.6 1.7 0.00012 25.4 -2.8 42 155-196 2-44 (51)
43 d1b8ta3 g.39.1.3 (A:101-143) C 25.8 12 0.00085 20.8 1.1 30 152-183 14-43 (43)
44 d1b8ta1 g.39.1.3 (A:1-35) Cyst 23.8 3.9 0.00028 21.5 -1.2 29 152-183 6-35 (35)
45 d1vfya_ g.50.1.1 (A:) vps27p p 22.5 25 0.0018 20.9 2.3 34 153-186 5-39 (67)
46 d2gmga1 a.4.5.82 (A:1-105) Hyp 21.6 7.8 0.00057 25.9 -0.4 24 172-200 71-94 (105)
47 d1dvpa2 g.50.1.1 (A:149-220) H 20.9 22 0.0016 21.5 1.8 33 153-185 13-46 (72)
No 1
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=99.68 E-value=6.4e-18 Score=108.80 Aligned_cols=49 Identities=37% Similarity=0.981 Sum_probs=45.0
Q ss_pred CccccccccccccCCCceEEcc-CCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMP-CSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp-C~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
++.+|+||+++|..++.++++| |+|.||..||.+|++.+.+||+||++|
T Consensus 4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i 53 (55)
T d1iyma_ 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence 3467999999999988898886 999999999999999999999999986
No 2
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=99.56 E-value=7.2e-16 Score=103.03 Aligned_cols=47 Identities=30% Similarity=0.872 Sum_probs=42.0
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..+.|+||++.+. +.++.+||+|.||..||.+|++.+.+||+||+++
T Consensus 4 ~~d~C~IC~~~~~--~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i 50 (68)
T d1chca_ 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCccCCcCcc--CCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcch
Confidence 4578999999995 3567799999999999999999999999999976
No 3
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.49 E-value=9.5e-15 Score=102.21 Aligned_cols=49 Identities=29% Similarity=0.666 Sum_probs=41.3
Q ss_pred CccccccccccccCCC---------------ceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGS---------------KAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~---------------~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..+.|+||++.+.... .+..++|+|.||..||.+||+.+.+||+||+++
T Consensus 20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 83 (88)
T d3dplr1 20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 83 (88)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCcc
Confidence 4567999988775422 356789999999999999999999999999875
No 4
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.45 E-value=9.2e-15 Score=92.63 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=39.3
Q ss_pred ccccccccccCCCc-eEEccCCCcccHHHHHHHHhc-CCCCCCCCccCC
Q 042704 155 YCVICLEVMKEGSK-AARMPCSHIYHQDCLVNWLKN-SSLCPLCRFQLS 201 (201)
Q Consensus 155 ~C~ICle~~~~~~~-~~~LpC~H~FH~~CI~~WL~~-~~~CPlCR~~l~ 201 (201)
+|+||+++|..++. +..++|||.||..||.+|++. +..||+||+++.
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~ 50 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence 79999999976544 445689999999999999985 457999999873
No 5
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.44 E-value=4e-14 Score=97.13 Aligned_cols=44 Identities=34% Similarity=0.884 Sum_probs=39.5
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHh-cCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK-NSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~-~~~~CPlCR~~l 200 (201)
..|+||++.+ ..++.+||||.||..||.+||. ++.+||+||..+
T Consensus 24 ~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i 68 (79)
T d1fbva4 24 QLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68 (79)
T ss_dssp TBCTTTSSSB---CCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCC
T ss_pred CCCccCCCcC---CCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCc
Confidence 5699999999 5788999999999999999997 556899999986
No 6
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.41 E-value=7.8e-14 Score=92.15 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=39.4
Q ss_pred CccccccccccccCCC--ceEEccCCCcccHHHHHHHHhc-CCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGS--KAARMPCSHIYHQDCLVNWLKN-SSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~--~~~~LpC~H~FH~~CI~~WL~~-~~~CPlCR~~l 200 (201)
++..|+||++.+..+. ....++|+|.||..||.+|++. +..||+||+++
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i 53 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCc
Confidence 3578999999864332 3456789999999999999964 56899999986
No 7
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.38 E-value=1.2e-13 Score=100.54 Aligned_cols=49 Identities=29% Similarity=0.652 Sum_probs=39.1
Q ss_pred CccccccccccccCC---------------CceEEccCCCcccHHHHHHHHhcC-----CCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEG---------------SKAARMPCSHIYHQDCLVNWLKNS-----SLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~---------------~~~~~LpC~H~FH~~CI~~WL~~~-----~~CPlCR~~l 200 (201)
.+..|+||++.+... ..+..++|+|.||..||..||+.+ .+||+||..+
T Consensus 24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~ 92 (114)
T d1v87a_ 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchh
Confidence 357899999988532 235678899999999999999743 4799999764
No 8
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.31 E-value=3.1e-13 Score=86.67 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=39.2
Q ss_pred ccccccccccCCCceEEcc-CCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 155 YCVICLEVMKEGSKAARMP-CSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 155 ~C~ICle~~~~~~~~~~Lp-C~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
.|+||++.+ ..++.++ |||.||++||.+||+++.+||+||+++
T Consensus 2 ~C~Ic~~~~---~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l 45 (56)
T d2baya1 2 LCAISGKVP---RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 45 (56)
T ss_dssp CCTTTCSCC---SSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBC
T ss_pred CCccCCchH---HhcCccCCCCCcccHHHHHHHHhhccCCCccCCcC
Confidence 599999999 5677775 999999999999999999999999986
No 9
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.26 E-value=1.6e-12 Score=90.46 Aligned_cols=45 Identities=29% Similarity=0.808 Sum_probs=40.0
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHh-cCCCCCCCCccC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLK-NSSLCPLCRFQL 200 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~-~~~~CPlCR~~l 200 (201)
...|+||++.+ ..++.+||||.|+..||.+|++ ++..||+||.++
T Consensus 23 ~l~C~IC~~~~---~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~ 68 (86)
T d1rmda2 23 SISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68 (86)
T ss_dssp HTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CcCCccCCcch---hcceecCCCChhhHHHHHHHHhhCCCcCcccCCCC
Confidence 36899999999 6788999999999999999997 456899999876
No 10
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.24 E-value=1.6e-12 Score=93.05 Aligned_cols=44 Identities=34% Similarity=0.880 Sum_probs=38.5
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcC---CCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNS---SLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~---~~CPlCR~~l 200 (201)
..|+||++.| ..++.+||||.||..||..|++.. ..||+||.++
T Consensus 22 l~CpIC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (103)
T d1jm7a_ 22 LECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (103)
T ss_dssp TSCSSSCCCC---SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred cCCCccCchh---CCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcC
Confidence 5799999999 466789999999999999999754 3799999876
No 11
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.23 E-value=3.6e-13 Score=86.45 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=37.1
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHHhcCCCCCCCCccCC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQLS 201 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l~ 201 (201)
...|+||++.+ ..++.+||||.||..||.+| +..||+||++++
T Consensus 6 ~l~C~IC~~~~---~~p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T d1bora_ 6 FLRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CSSCSSSCSSC---BCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred CCCCcccCccc---CCCEEecCCCHHhHHHHHcC---CCcCcCCCCccc
Confidence 46899999999 45678999999999999865 568999999874
No 12
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=99.18 E-value=5.9e-12 Score=81.49 Aligned_cols=48 Identities=25% Similarity=0.606 Sum_probs=37.5
Q ss_pred CCCccccccccccccCCCceEEccC-----CCcccHHHHHHHHh--cCCCCCCCCccC
Q 042704 150 GCSQQYCVICLEVMKEGSKAARMPC-----SHIYHQDCLVNWLK--NSSLCPLCRFQL 200 (201)
Q Consensus 150 ~~~~~~C~ICle~~~~~~~~~~LpC-----~H~FH~~CI~~WL~--~~~~CPlCR~~l 200 (201)
+.+...|.||++.+.. ....|| +|.||..||.+|+. ++.+||+||+++
T Consensus 3 ded~~~C~IC~~~~~~---~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~ 57 (60)
T d1vyxa_ 3 DEDVPVCWICNEELGN---ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TCSCCEETTTTEECSC---CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCCccCCccCCC---ceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCee
Confidence 3456789999999853 234454 59999999999995 566899999876
No 13
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.10 E-value=2.7e-11 Score=82.59 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=40.9
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc-CCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN-SSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~-~~~CPlCR~~l 200 (201)
++..|+||++.+ ..++.+||||.|+..||.+|+.+ +.+||+||.++
T Consensus 6 ~~l~CpIc~~l~---~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l 52 (80)
T d2c2la2 6 DYLCGKISFELM---REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 52 (80)
T ss_dssp STTBCTTTCSBC---SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred ccccCcCcCchh---hhhcccCCcCeecHHHHHHHHhcCCccCCCccccc
Confidence 467899999999 67789999999999999999974 56899999876
No 14
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.06 E-value=5.7e-11 Score=80.53 Aligned_cols=46 Identities=24% Similarity=0.518 Sum_probs=40.9
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhcC-CCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNS-SLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~-~~CPlCR~~l 200 (201)
++..|+||++.+ ..++.++|||.|++.||.+|+..+ ..||.||.++
T Consensus 7 ~~l~CpIc~~~m---~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l 53 (78)
T d1t1ha_ 7 EYFRCPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSSSCTTTSCCC---SSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred ccCCCcCcCchh---hCceEccCCCcchHHHHHHHHHHCCCCCCcccccC
Confidence 468999999999 677899999999999999999764 5799999876
No 15
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.99 E-value=2.8e-11 Score=85.45 Aligned_cols=42 Identities=21% Similarity=0.682 Sum_probs=35.4
Q ss_pred cccccccccccCCCceEE-ccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEGSKAAR-MPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~-LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+||++.|. .++. .+|||.||..||.+|+. ..||.||.++
T Consensus 23 l~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~ 65 (97)
T d1jm7b_ 23 LRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPA 65 (97)
T ss_dssp TSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBC
T ss_pred CCCccCCchhh---cCceeCCCCCchhHHHHHHHHh--ccccccCCcC
Confidence 58999999994 4555 47999999999999985 4599999865
No 16
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.83 E-value=1.3e-09 Score=77.08 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=41.8
Q ss_pred CccccccccccccCCCceEEccCC-CcccHHHHHHHHhcCCCCCCCCccC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCS-HIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~-H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
++..|+||++.+ ..++++||+ |.|++.||.+||.++.+||+||.++
T Consensus 21 ~~f~CPI~~~lm---~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l 67 (98)
T d1wgma_ 21 DEFLDPIMSTLM---CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp TTTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred HHhCCcCchhHH---HHHHhcccccchhhHHHHHHHHHhcCCcccccccc
Confidence 468999999999 788899976 5799999999999999999999886
No 17
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.55 E-value=1.4e-08 Score=70.59 Aligned_cols=46 Identities=20% Similarity=0.415 Sum_probs=36.6
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc-----C---CCCCCCC
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN-----S---SLCPLCR 197 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~-----~---~~CPlCR 197 (201)
+...|+||++++..++.+..++|+|.||..|+..|++. . -.||.|+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~ 57 (94)
T d1wima_ 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence 45789999999976555666789999999999999962 1 2599864
No 18
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.37 E-value=0.04 Score=32.54 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=29.4
Q ss_pred ccccccccccCCCceEEccCCCcccHHHHHHHHhcC----CCCCCCCc
Q 042704 155 YCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNS----SLCPLCRF 198 (201)
Q Consensus 155 ~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~----~~CPlCR~ 198 (201)
.|.||...-..+..+.--.|...||..|+..-+... -.||.||.
T Consensus 2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~ 49 (51)
T d1f62a_ 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence 488887654333323233488999999998876532 26999985
No 19
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.52 E-value=0.063 Score=35.28 Aligned_cols=31 Identities=32% Similarity=0.888 Sum_probs=25.1
Q ss_pred CccccccccccccCCCceEEcc---CCCcccHHHHHHH
Q 042704 152 SQQYCVICLEVMKEGSKAARMP---CSHIYHQDCLVNW 186 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~Lp---C~H~FH~~CI~~W 186 (201)
++..|.|| +.+...+ ++| |+.+||..|+.+.
T Consensus 14 ~D~mC~vC-~v~t~~~---l~pCRvCtRv~H~~CL~r~ 47 (89)
T d1wila_ 14 NDEMCDVC-EVWTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTT-CCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred cCcccccc-Ccccccc---eecceeecchhhHHHHHHh
Confidence 67899999 8885443 557 6899999999997
No 20
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.81 E-value=0.17 Score=31.83 Aligned_cols=42 Identities=26% Similarity=0.691 Sum_probs=28.2
Q ss_pred cccccccccccCCCceEEccCCCcccHHHHHHHHhcCC----CCCCCCc
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKNSS----LCPLCRF 198 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~~~----~CPlCR~ 198 (201)
..|.+|.+ .|+.+.-=.|...||..|+.+.+.... .||.|+.
T Consensus 8 ~~C~~C~~---~~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 53 (70)
T d1fp0a1 8 TICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 53 (70)
T ss_dssp SCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCCCC---cCEEEECCCCChhhccccCCCCcCcCCCCCEECcCCcC
Confidence 45666653 344333344899999999998775332 6999975
No 21
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.49 E-value=0.1 Score=31.99 Aligned_cols=45 Identities=29% Similarity=0.651 Sum_probs=30.1
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHHHHHHhc----CCCCCCCCcc
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWLKN----SSLCPLCRFQ 199 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL~~----~~~CPlCR~~ 199 (201)
....|.+|.+. +.-+.-=.|.-.||..|+..-+.. .-.||.|+..
T Consensus 8 ~~~~C~~C~~~---g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~ 56 (61)
T d1mm2a_ 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CcCCCcCCCCC---CeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCc
Confidence 44679999753 332223347889999999765542 3379999764
No 22
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=69.93 E-value=0.97 Score=27.31 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=32.6
Q ss_pred CccccccccccccCCCceE-EccCCCcccHHHHHHHH---h--cCCCCCCCCcc
Q 042704 152 SQQYCVICLEVMKEGSKAA-RMPCSHIYHQDCLVNWL---K--NSSLCPLCRFQ 199 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~-~LpC~H~FH~~CI~~WL---~--~~~~CPlCR~~ 199 (201)
+...|.+|.+....+...+ --.|+..||..|+..=. . ....||.|+..
T Consensus 5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~ 58 (64)
T d1we9a_ 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence 4578999998876554433 23489999999995321 1 34579999653
No 23
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.09 E-value=1.1 Score=27.10 Aligned_cols=43 Identities=21% Similarity=0.600 Sum_probs=28.6
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHHHHH-hcCCCCCCC
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLVNWL-KNSSLCPLC 196 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~~WL-~~~~~CPlC 196 (201)
...|.-|+..+.....-....|++.|+.+|= -.+ ..-..||-|
T Consensus 15 ~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD-~fiHe~lh~CpgC 58 (59)
T d1z60a1 15 ERFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp CCEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred CCCccCCCCcCCCCceEECcCCCCccccccc-hhhhhhhcCCCCC
Confidence 4679999988864322222349999999993 333 344579987
No 24
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=66.78 E-value=1.5 Score=27.24 Aligned_cols=45 Identities=24% Similarity=0.599 Sum_probs=27.2
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHHH----H--H---HhcCCCCCCCCc
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCLV----N--W---LKNSSLCPLCRF 198 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI~----~--W---L~~~~~CPlCR~ 198 (201)
...| ||......+.-+.-=-|.-.||..|+. . . ......||.|+.
T Consensus 16 ~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~ 69 (76)
T d1wema_ 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred cCEE-ECCCccCCCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcC
Confidence 4567 887765433222223378889999982 1 1 123468999964
No 25
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=65.44 E-value=3.7 Score=25.71 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=28.1
Q ss_pred cccccccccccCCCceE-EccCCCcccHHHHH--HHH-h--cCCCCCCCCcc
Q 042704 154 QYCVICLEVMKEGSKAA-RMPCSHIYHQDCLV--NWL-K--NSSLCPLCRFQ 199 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~-~LpC~H~FH~~CI~--~WL-~--~~~~CPlCR~~ 199 (201)
..| ||...+..+...+ .=-|.--||..|+. ... . .+..||.|+..
T Consensus 13 v~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~ 63 (79)
T d1wepa_ 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred eEe-ECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCC
Confidence 345 8988764433322 23388889999994 221 1 23589999864
No 26
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=63.83 E-value=2.9 Score=28.57 Aligned_cols=32 Identities=19% Similarity=0.437 Sum_probs=22.6
Q ss_pred CccccccccccccC-C-CceEEccCCCcccHHHH
Q 042704 152 SQQYCVICLEVMKE-G-SKAARMPCSHIYHQDCL 183 (201)
Q Consensus 152 ~~~~C~ICle~~~~-~-~~~~~LpC~H~FH~~CI 183 (201)
+...|.+|...|.. . ......-|++.||..|-
T Consensus 47 ~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~ 80 (124)
T d1zbdb_ 47 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 80 (124)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCcCcccCCcccCCCCCCCcCccCCcccccCCC
Confidence 45789999998863 1 22223558999999994
No 27
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.78 E-value=11 Score=23.48 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=27.4
Q ss_pred ccccccccccccCCCceEEcc--CCCcccHHHHHHHHh
Q 042704 153 QQYCVICLEVMKEGSKAARMP--CSHIYHQDCLVNWLK 188 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~Lp--C~H~FH~~CI~~WL~ 188 (201)
...|.+|.|-+++.. -++-| =+|.|+-.|-+..++
T Consensus 8 ~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sik 44 (80)
T d2cs3a1 8 PLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIK 44 (80)
T ss_dssp SCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHH
T ss_pred ceeeeeehhhhcCCc-eEeCCCCcCCceeccccHHHHH
Confidence 478999999997543 34545 389999999998886
No 28
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.46 E-value=1.8 Score=23.57 Aligned_cols=29 Identities=24% Similarity=0.693 Sum_probs=19.7
Q ss_pred CccccccccccccCCCceEEccC-CCcccHHHH
Q 042704 152 SQQYCVICLEVMKEGSKAARMPC-SHIYHQDCL 183 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC-~H~FH~~CI 183 (201)
..+.|.+|-.-.- .+-++.+ ++.||+.|+
T Consensus 7 ~~~~C~~C~K~VY---~~Erl~a~g~~yHk~CF 36 (36)
T d2co8a2 7 AGDLCALCGEHLY---VLERLCVNGHFFHRSCF 36 (36)
T ss_dssp SSCBCSSSCCBCC---TTTBCCBTTBCCBTTTC
T ss_pred CCCcccccCCEEe---eeeEEEecCcEeccccC
Confidence 4578999987542 2224443 889999984
No 29
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=52.12 E-value=3 Score=25.88 Aligned_cols=41 Identities=29% Similarity=0.745 Sum_probs=24.8
Q ss_pred cccccccccccCCCceEEcc---CC-CcccHHHHHHHHh----cCCCCCCCCcc
Q 042704 154 QYCVICLEVMKEGSKAARMP---CS-HIYHQDCLVNWLK----NSSLCPLCRFQ 199 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~Lp---C~-H~FH~~CI~~WL~----~~~~CPlCR~~ 199 (201)
..| ||.+... ......- |. ..||..|+. |. ..-.||.|+..
T Consensus 17 ~~C-iC~~~~~--~~~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~ 65 (71)
T d1wesa_ 17 TYC-LCNQVSY--GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 65 (71)
T ss_dssp CCS-TTCCCCC--SSEECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CEE-EeCCCCC--CCEEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCccc
Confidence 456 8987542 2333332 43 469999984 32 23379999864
No 30
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=45.58 E-value=4.1 Score=25.84 Aligned_cols=11 Identities=36% Similarity=1.292 Sum_probs=10.0
Q ss_pred ccHHHHHHHHh
Q 042704 178 YHQDCLVNWLK 188 (201)
Q Consensus 178 FH~~CI~~WL~ 188 (201)
||+.|+.+|..
T Consensus 40 FCRNCLskWy~ 50 (79)
T d2o35a1 40 FCRNCLSNWYR 50 (79)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999975
No 31
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.10 E-value=2.9 Score=22.48 Aligned_cols=28 Identities=21% Similarity=0.672 Sum_probs=19.4
Q ss_pred ccccccccccccCCCceEEccC-CCcccHHHH
Q 042704 153 QQYCVICLEVMKEGSKAARMPC-SHIYHQDCL 183 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC-~H~FH~~CI 183 (201)
.+.|..|-.-. -.+-++.+ |+.||+.|+
T Consensus 7 ~~kC~~C~K~V---Y~~E~~~a~g~~~Hk~CF 35 (35)
T d2d8ya1 7 RETCVECQKTV---YPMERLLANQQVFHISCF 35 (35)
T ss_dssp SCBCTTTCCBC---CTTSEEECSSSEEETTTC
T ss_pred CcccccCCCEE---eeeeeEecCCeehhhccC
Confidence 47899998855 23334554 888999883
No 32
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=42.60 E-value=9 Score=23.62 Aligned_cols=44 Identities=20% Similarity=0.550 Sum_probs=28.3
Q ss_pred ccccccccccccCCCceEEcc---CCCcccHHHHHH----HHh-----cCCCCCCCCc
Q 042704 153 QQYCVICLEVMKEGSKAARMP---CSHIYHQDCLVN----WLK-----NSSLCPLCRF 198 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~Lp---C~H~FH~~CI~~----WL~-----~~~~CPlCR~ 198 (201)
...| ||-.....+ ...... |..-||..|+.- ... ....||.|+.
T Consensus 16 ~~~C-~C~~~~~~~-~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T d1wewa_ 16 KVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred ccEe-ECCCccCCC-cEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcC
Confidence 3567 898877543 334553 888999999831 101 1357999964
No 33
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=40.94 E-value=5.5 Score=24.77 Aligned_cols=38 Identities=26% Similarity=0.591 Sum_probs=20.6
Q ss_pred cccccccccccCC-CceEEccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 154 QYCVICLEVMKEG-SKAARMPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 154 ~~C~ICle~~~~~-~~~~~LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..|+.|..++... .....-.|...| +....||-|.++|
T Consensus 3 ~~CP~C~~eL~~~~~~~~C~~C~~~~---------~~~a~CPdC~~~L 41 (71)
T d2jnea1 3 LHCPQCQHVLDQDNGHARCRSCGEFI---------EMKALCPDCHQPL 41 (71)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEE---------EEEEECTTTCSBC
T ss_pred CcCCCccCcccccCCCEehhhhhhhh---------eeEEeCCccccHH
Confidence 4688888887531 111112233333 3344688888775
No 34
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.14 E-value=3 Score=22.44 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=19.6
Q ss_pred ccccccccccccCCCceEEccCCCcccHHHH
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDCL 183 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI 183 (201)
-..|.+|-+.+. +...-..|-.||..|+
T Consensus 8 lEkC~~C~~~I~---driLrA~Gk~yHP~CF 35 (35)
T d2dloa1 8 LEKCATCSQPIL---DRILRAMGKAYHPGCF 35 (35)
T ss_dssp CCBCTTTCCBCC---SCCEEETTEEECTTTC
T ss_pred HHHHHHhchHHH---HHHHHHhCCCCCCCCC
Confidence 368999999985 2223346888998773
No 35
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.23 E-value=4.8 Score=22.35 Aligned_cols=27 Identities=26% Similarity=0.672 Sum_probs=18.9
Q ss_pred ccccccccccccCCCceEEccCCCcccHHH
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDC 182 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~C 182 (201)
...|..|.+.+. |.-+.. =+|.||..|
T Consensus 15 G~~C~~C~~~It-G~V~~A--g~~~yHP~C 41 (41)
T d1v6ga1 15 GTRCFSCDQFIE-GEVVSA--LGKTYHPDC 41 (41)
T ss_dssp CCBCTTTCCBCC-SCCEEE--TTEEECTTT
T ss_pred CcccccccCEee-eeeeEe--cCcccCCCC
Confidence 468999999984 433333 368899877
No 36
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.97 E-value=5.5 Score=23.88 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=22.8
Q ss_pred CccccccccccccCCCc-eEEccCCCcccHHHHHHH
Q 042704 152 SQQYCVICLEVMKEGSK-AARMPCSHIYHQDCLVNW 186 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~-~~~LpC~H~FH~~CI~~W 186 (201)
+...|.+|...|..-.. -----||++|+..|....
T Consensus 7 ~~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~~~ 42 (64)
T d1joca1 7 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 42 (64)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCcCCcccCCccccchhhhCCeecccccCCc
Confidence 34679999999853211 111338999999996543
No 37
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.15 E-value=7.4 Score=24.51 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=27.8
Q ss_pred ccccccccccccCCC-ceE-EccCCCcccHHHHHHHH-----h---cCCCCCCCCc
Q 042704 153 QQYCVICLEVMKEGS-KAA-RMPCSHIYHQDCLVNWL-----K---NSSLCPLCRF 198 (201)
Q Consensus 153 ~~~C~ICle~~~~~~-~~~-~LpC~H~FH~~CI~~WL-----~---~~~~CPlCR~ 198 (201)
...|.||........ .++ .--|...||..|+.+.+ . ..-.||.|..
T Consensus 16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~ 71 (88)
T d1weva_ 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCc
Confidence 356999987543221 221 22378899999986432 1 1346998853
No 38
>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.62 E-value=6.8 Score=20.68 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=19.3
Q ss_pred ccccccccccccCCCceEEccCCCcccHHH
Q 042704 153 QQYCVICLEVMKEGSKAARMPCSHIYHQDC 182 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~~~~LpC~H~FH~~C 182 (201)
...|-.|-+.+. -++...=.|.||.+|
T Consensus 8 ge~C~~C~~~it---GpvMvAG~~K~HPEC 34 (34)
T d1x6aa1 8 GEFCHGCSLLMT---GPFMVAGEFKYHPEC 34 (34)
T ss_dssp SCBCTTTCCBCC---SCCBCCTTCCBCTTS
T ss_pred HHHhhhhHhhcc---cceeeecccccCCCC
Confidence 357999998773 344555679999877
No 39
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.40 E-value=9.7 Score=22.28 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=20.3
Q ss_pred cccccccccCCCceEEccC-CCcccHHHHHHH
Q 042704 156 CVICLEVMKEGSKAARMPC-SHIYHQDCLVNW 186 (201)
Q Consensus 156 C~ICle~~~~~~~~~~LpC-~H~FH~~CI~~W 186 (201)
|.||.++- .++.+.| +-.|+..|...-
T Consensus 4 C~ICneDA----~lrC~gCdgdLyC~rC~rE~ 31 (54)
T d2d8va1 4 CCICNEDA----TLRCAGCDGDLYCARCFREG 31 (54)
T ss_dssp CTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred eEEecCCC----ceEecCCCCceehHHHHHHh
Confidence 88998885 5577788 567888887653
No 40
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.03 E-value=8 Score=20.09 Aligned_cols=29 Identities=21% Similarity=0.548 Sum_probs=21.0
Q ss_pred cccccccccccCCCceEEccCCCcccHHHH
Q 042704 154 QYCVICLEVMKEGSKAARMPCSHIYHQDCL 183 (201)
Q Consensus 154 ~~C~ICle~~~~~~~~~~LpC~H~FH~~CI 183 (201)
..|+-|...+...+-+++ .=.++||..|+
T Consensus 3 g~Ca~C~~~I~~~e~VmR-A~~~VyHl~CF 31 (31)
T d1rutx3 3 GACSACGQSIPASELVMR-AQGNVYHLKCF 31 (31)
T ss_dssp EECTTTCCEECTTSEEEE-ETTEEECGGGC
T ss_pred cccccccCcCChhHhhee-cccceeeeccC
Confidence 469999999876554443 34788999884
No 41
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.66 E-value=46 Score=21.16 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=34.2
Q ss_pred CCCccccccccccccCCC----ceEEccCCCcccHHHHHHHHh-cCCCCCCCCcc
Q 042704 150 GCSQQYCVICLEVMKEGS----KAARMPCSHIYHQDCLVNWLK-NSSLCPLCRFQ 199 (201)
Q Consensus 150 ~~~~~~C~ICle~~~~~~----~~~~LpC~H~FH~~CI~~WL~-~~~~CPlCR~~ 199 (201)
......|.||-+...... .+..-.|+--.++.|..==.+ .+..||.|+..
T Consensus 13 ~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~ 67 (93)
T d1weoa_ 13 NLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTR 67 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCC
T ss_pred hcccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCCh
Confidence 345688999999876422 122334777789999864443 66789999765
No 42
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.61 E-value=1.7 Score=25.39 Aligned_cols=42 Identities=19% Similarity=0.483 Sum_probs=24.0
Q ss_pred ccccccccccCCCc-eEEccCCCcccHHHHHHHHhcCCCCCCC
Q 042704 155 YCVICLEVMKEGSK-AARMPCSHIYHQDCLVNWLKNSSLCPLC 196 (201)
Q Consensus 155 ~C~ICle~~~~~~~-~~~LpC~H~FH~~CI~~WL~~~~~CPlC 196 (201)
.|.+|...|..... .----||.+|+..|..+.-.....|..|
T Consensus 2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~~~~RvC~~C 44 (51)
T d1y02a2 2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 44 (51)
T ss_dssp CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred CccccCCcccCCccCcccccCCcccCccccCCCCCCCeECHhH
Confidence 48888888853221 1113489999999976544444455555
No 43
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=25.81 E-value=12 Score=20.81 Aligned_cols=30 Identities=17% Similarity=0.460 Sum_probs=19.3
Q ss_pred CccccccccccccCCCceEEccCCCcccHHHH
Q 042704 152 SQQYCVICLEVMKEGSKAARMPCSHIYHQDCL 183 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC~H~FH~~CI 183 (201)
..+.|..|-.-.-.-+. ...=++.||+.|+
T Consensus 14 ~~~kC~~C~k~VY~~E~--~~~~g~~~Hk~CF 43 (43)
T d1b8ta3 14 GSDGCPRCGQAVYAAEK--VIGAGKSWHKSCF 43 (43)
T ss_dssp CCEECTTTSCEECSSSC--EEETTEEECTTTC
T ss_pred CCCcCccCCCEeeHHHH--hhcCCCccccCCC
Confidence 34789999874422222 2335899999884
No 44
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=23.77 E-value=3.9 Score=21.55 Aligned_cols=29 Identities=17% Similarity=0.643 Sum_probs=18.0
Q ss_pred CccccccccccccCCCceEEccC-CCcccHHHH
Q 042704 152 SQQYCVICLEVMKEGSKAARMPC-SHIYHQDCL 183 (201)
Q Consensus 152 ~~~~C~ICle~~~~~~~~~~LpC-~H~FH~~CI 183 (201)
....|..|....--.+ ...| +..||+.|+
T Consensus 6 gg~kcg~c~ktvy~ae---evqc~g~sfhk~cf 35 (35)
T d1b8ta1 6 GGKKCGVCQKAVYFAE---EVQCEGSSFHKSCF 35 (35)
T ss_dssp CCEECTTTCCEECSSC---CEEETTEEECTTTC
T ss_pred CCceeccccceEeeee---eeeecCcccccccC
Confidence 3568888887442112 3446 677998883
No 45
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.55 E-value=25 Score=20.90 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=22.1
Q ss_pred ccccccccccccCCCc-eEEccCCCcccHHHHHHH
Q 042704 153 QQYCVICLEVMKEGSK-AARMPCSHIYHQDCLVNW 186 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~-~~~LpC~H~FH~~CI~~W 186 (201)
+..|.+|...|..-.. .----||.+|+..|....
T Consensus 5 ~~~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~ 39 (67)
T d1vfya_ 5 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 39 (67)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccccCCCcccCcccccccccCCCEecccccCCc
Confidence 3579999999853211 111238999999996443
No 46
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=21.63 E-value=7.8 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.616 Sum_probs=15.5
Q ss_pred ccCCCcccHHHHHHHHhcCCCCCCCCccC
Q 042704 172 MPCSHIYHQDCLVNWLKNSSLCPLCRFQL 200 (201)
Q Consensus 172 LpC~H~FH~~CI~~WL~~~~~CPlCR~~l 200 (201)
..||=+|- .=++..+.||.|+.+.
T Consensus 71 rkCGfvFr-----~~~kkPSRCP~CKSE~ 94 (105)
T d2gmga1 71 RKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhcCCeec-----ccCCCCCCCCCCCCcc
Confidence 44676672 1245567899999764
No 47
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.89 E-value=22 Score=21.53 Aligned_cols=33 Identities=12% Similarity=0.374 Sum_probs=22.2
Q ss_pred ccccccccccccCCCc-eEEccCCCcccHHHHHH
Q 042704 153 QQYCVICLEVMKEGSK-AARMPCSHIYHQDCLVN 185 (201)
Q Consensus 153 ~~~C~ICle~~~~~~~-~~~LpC~H~FH~~CI~~ 185 (201)
+..|.+|...|..-.. .----||++|+..|...
T Consensus 13 ~~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~ 46 (72)
T d1dvpa2 13 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 46 (72)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccccCCCcccCccccccccccCCeeChhhhCC
Confidence 4679999999953211 11134899999999654
Done!