BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042707
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|B Chain B, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
pdb|1X8Z|C Chain C, Crystal Structure Of A Pectin Methylesterase Inhibitor
From Arabidopsis Thaliana
Length = 153
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 41 IKTSCRVTTYPDLCITTLSGYATKIQASPKL--LASTALSVALKTALVTSTTMNKLSK-- 96
+ T C T P C+ L+ TK ASP L LA T L T + T+ KL
Sbjct: 8 MSTICDKTLNPSFCLKFLN---TKF-ASPNLQALAKTTLD---STQARATQTLKKLQSII 60
Query: 97 SQGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNED 156
G++PR A CVD+ A+ L+ + + + + MN VSAAL D
Sbjct: 61 DGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGD----GMGMN---MKVSAALDGAD 113
Query: 157 TCMDGFSR 164
TC+D R
Sbjct: 114 TCLDDVKR 121
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 152
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 16/127 (12%)
Query: 41 IKTSCRVTTYPDLCITTLSGYATKI-QASPKLLASTALSVALKTALVTSTTMNKLSK--S 97
+ T C T P C+ L+ TK A+ + LA T L T + T+ KL
Sbjct: 7 MSTICDKTLNPSFCLKFLN---TKFASANLQALAKTTLD---STQARATQTLKKLQSIID 60
Query: 98 QGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDT 157
G++PR A CVD+ A+ L+ + + + + MN VSAAL DT
Sbjct: 61 GGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGD----GMGMN---MKVSAALDGADT 113
Query: 158 CMDGFSR 164
C+D R
Sbjct: 114 CLDDVKR 120
>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 153
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 16/127 (12%)
Query: 41 IKTSCRVTTYPDLCITTLSGYATKI-QASPKLLASTALSVALKTALVTSTTMNKLSK--S 97
+ T C T P C+ L+ TK A+ + LA T L T + T+ KL
Sbjct: 8 MSTICDKTLNPSFCLKFLN---TKFASANLQALAKTTLD---STQARATQTLKKLQSIID 61
Query: 98 QGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDT 157
G++PR A CVD+ A+ L+ + + + + MN VSAAL DT
Sbjct: 62 GGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGD----GMGMN---MKVSAALDGADT 114
Query: 158 CMDGFSR 164
C+D R
Sbjct: 115 CLDDVKR 121
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Query: 39 QFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQ 98
I C T P LC+ L K L ++ +A +A TS + L+ +Q
Sbjct: 4 HLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLT-NQ 62
Query: 99 GLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTC 158
+P+ C + DA+D L G+ ++ + N++ + SAA TC
Sbjct: 63 ATDPKLKGRYETCSENYADAIDSL-------GQAKQFLTSGDYNSLNIYASAAFDGAGTC 115
Query: 159 MDGF 162
D F
Sbjct: 116 EDSF 119
>pdb|3B51|X Chain X, Ni,Fe-Codh-600 Mv State
pdb|3B52|X Chain X, Ni,Fe-Codh-600 Mv State + Co2
pdb|3B53|X Chain X, Ni,Fe-Codh-320 Mv State
pdb|3I39|X Chain X, Ni,Fe-Codh-320 Mv+cn State
pdb|2YIV|X Chain X, Ni,Fe-Codh With N-Butylisocyanate State
Length = 656
Score = 30.0 bits (66), Expect = 0.99, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 83 TALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMN 142
T ++T+ M+K++ + +N E AA+ + LR A+D + R +++
Sbjct: 367 TTVITTMEMSKITGATHVNFAEEAAVENAKQILRLAIDTFK---------RRKGKPVEIP 417
Query: 143 NVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYASITSP 202
N++T V A + E ++ S+ + N +K I NV + G+ L ++ P
Sbjct: 418 NIKTKVVAGFSTE-AIINALSKLNANDPLKPL----IDNVVNGNIRGVCLFAGCNNVKVP 472
Query: 203 K 203
+
Sbjct: 473 Q 473
>pdb|1SU6|A Chain A, Carbon Monoxide Dehydrogenase From Carboxydothermus
Hydrogenoformans: Co Reduced State
pdb|1SU7|A Chain A, Carbon Monoxide Dehydrogenase From Carboxydothermus
Hydrogenoformans- Dtt Reduced State
pdb|1SU8|A Chain A, Carbon Monoxide Induced Decomposition Of The Active Site
[ni-4fe-5s] Cluster Of Co Dehydrogenase
pdb|1SUF|A Chain A, Carbon Monoxide Dehydrogenase From Carboxydothermus
Hydrogenoformans- Inactive State
Length = 636
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 83 TALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMN 142
T ++T+ M+K++ + +N E AA+ + LR A+D + R +++
Sbjct: 347 TTVITTMEMSKITGATHVNFAEEAAVENAKQILRLAIDTFK---------RRKGKPVEIP 397
Query: 143 NVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYASITSP 202
N++T V A + E ++ S+ + N +K I NV + G+ L ++ P
Sbjct: 398 NIKTKVVAGFSTE-AIINALSKLNANDPLKPL----IDNVVNGNIRGVCLFAGCNNVKVP 452
Query: 203 K 203
+
Sbjct: 453 Q 453
>pdb|2NX9|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
pdb|2NX9|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
Length = 464
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 108 LYDCVDQLRDAVDELQNSISEMGRNERSNFAL---QMNNVQTWVSAALTNEDTCMDGFSR 164
++D ++ +R+ LQ ++ +MG + + ++N+QTWV A + +D +
Sbjct: 119 VFDAMNDVRNMQQALQ-AVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIAL 177
Query: 165 KSMNG--------NVKATVRRQISNVAHL---TSNGLA 191
K M G + +T+++Q+ HL ++ GLA
Sbjct: 178 KDMAGILTPYAAEELVSTLKKQVDVELHLHCHSTAGLA 215
>pdb|2Z3Q|B Chain B, Crystal Structure Of The Il-15IL-15ra Complex
pdb|2Z3Q|D Chain D, Crystal Structure Of The Il-15IL-15ra Complex
pdb|2Z3R|B Chain B, Crystal Structure Of The Il-15IL-15ra Complex
pdb|2Z3R|D Chain D, Crystal Structure Of The Il-15IL-15ra Complex
pdb|2Z3R|F Chain F, Crystal Structure Of The Il-15IL-15ra Complex
pdb|2Z3R|H Chain H, Crystal Structure Of The Il-15IL-15ra Complex
pdb|2Z3R|J Chain J, Crystal Structure Of The Il-15IL-15ra Complex
pdb|2Z3R|L Chain L, Crystal Structure Of The Il-15IL-15ra Complex
pdb|2Z3R|N Chain N, Crystal Structure Of The Il-15IL-15ra Complex
pdb|2Z3R|P Chain P, Crystal Structure Of The Il-15IL-15ra Complex
Length = 107
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 139 LQMNNVQTWV-SAALTNED--TCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNS 195
+ + + WV S +L + + C GF RK+ ++ V + +NVAH T+ L +
Sbjct: 12 MSVEHADIWVKSYSLYSRERYICNSGFKRKAGTSSLTECVLNKATNVAHWTTPSLKCIRD 71
Query: 196 YA 197
A
Sbjct: 72 PA 73
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 27.3 bits (59), Expect = 5.9, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 55 ITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAA------L 108
IT++ Y TK +PK+ + L+ T+N+ SK+ G + A A +
Sbjct: 2069 ITSIINYDTKKMMTPKIREAITKGY-LEDPGFDYETVNRASKACGPLVKWATAQTYYSEI 2127
Query: 109 YDCVDQLRDAVDELQNSISEM 129
D + LR+ V++L+N+ +E+
Sbjct: 2128 LDRIKPLREEVEQLENAANEL 2148
>pdb|2ERS|A Chain A, Solution Structure Of The Interleukin-15 Receptor Sushi
Domain
Length = 66
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 139 LQMNNVQTWV-SAALTNED--TCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALV 193
+ + + WV S +L + + C GF RK+ ++ V + +NVAH T+ L +
Sbjct: 7 MSVEHADIWVKSYSLYSRERYICNSGFKRKAGTSSLTECVLNKATNVAHWTTPSLKCI 64
>pdb|4GS7|D Chain D, Structure Of The Interleukin-15 Quaternary Complex
Length = 69
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 139 LQMNNVQTWV-SAALTNED--TCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALV 193
+ + + WV S +L + + C GF RK+ ++ V + +NVAH T+ L +
Sbjct: 9 MSVEHADIWVKSYSLYSRERYICNSGFKRKAGTSSLTECVLNKATNVAHWTTPSLKCI 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.124 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,849,177
Number of Sequences: 62578
Number of extensions: 148953
Number of successful extensions: 374
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 12
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)