Query 042707
Match_columns 203
No_of_seqs 144 out of 904
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01614 PME_inhib pectineste 100.0 1.5E-32 3.3E-37 217.7 19.0 154 33-196 24-177 (178)
2 smart00856 PMEI Plant invertas 100.0 3.8E-32 8.3E-37 208.8 16.9 147 36-192 2-148 (148)
3 PLN02314 pectinesterase 100.0 1.5E-31 3.2E-36 244.8 20.6 161 37-198 69-235 (586)
4 PLN02313 Pectinesterase/pectin 100.0 4.8E-31 1E-35 241.3 20.6 162 37-198 58-221 (587)
5 PLN02484 probable pectinestera 100.0 5E-31 1.1E-35 240.9 19.7 157 37-198 72-228 (587)
6 PLN02468 putative pectinestera 100.0 7.2E-31 1.5E-35 239.2 19.9 155 37-198 63-218 (565)
7 PLN02217 probable pectinestera 100.0 1.9E-30 4.2E-35 238.6 19.1 159 36-198 51-209 (670)
8 PLN02990 Probable pectinestera 100.0 2.4E-30 5.2E-35 235.9 19.4 158 37-198 52-211 (572)
9 PLN02416 probable pectinestera 100.0 2.4E-30 5.1E-35 234.6 18.4 187 6-198 3-193 (541)
10 PLN02713 Probable pectinestera 100.0 3.6E-30 7.8E-35 234.5 18.4 162 31-195 25-188 (566)
11 PLN02708 Probable pectinestera 100.0 4.8E-30 1E-34 233.3 19.2 154 36-197 42-196 (553)
12 PLN02197 pectinesterase 100.0 1.2E-29 2.7E-34 231.2 19.3 154 37-198 37-192 (588)
13 PF04043 PMEI: Plant invertase 100.0 1E-29 2.2E-34 195.7 15.5 148 36-192 2-152 (152)
14 PLN02301 pectinesterase/pectin 100.0 2.4E-29 5.1E-34 228.0 19.0 155 35-199 47-203 (548)
15 PLN02506 putative pectinestera 100.0 2.3E-29 5E-34 227.8 18.5 168 28-198 24-193 (537)
16 PLN02745 Putative pectinestera 100.0 3.2E-29 7E-34 229.2 19.4 154 37-198 78-233 (596)
17 PLN02995 Probable pectinestera 100.0 4.2E-29 9E-34 226.4 18.7 158 38-198 34-192 (539)
18 PLN02698 Probable pectinestera 100.0 1.3E-28 2.9E-33 221.5 17.8 156 35-198 19-178 (497)
19 PLN03043 Probable pectinestera 100.0 1.1E-27 2.4E-32 217.3 16.1 150 42-195 3-156 (538)
20 PLN02933 Probable pectinestera 99.9 1E-23 2.2E-28 190.2 18.3 128 66-198 48-183 (530)
21 PLN02201 probable pectinestera 99.9 3.2E-22 7E-27 180.5 16.1 126 69-197 37-164 (520)
22 PLN02488 probable pectinestera 99.9 8.2E-22 1.8E-26 176.2 14.7 152 42-198 2-161 (509)
23 PLN02170 probable pectinestera 99.8 1.8E-19 3.9E-24 162.4 14.7 130 49-199 58-187 (529)
24 PLN02916 pectinesterase family 99.7 4.5E-16 9.7E-21 139.9 11.4 87 99-198 56-142 (502)
25 PF07870 DUF1657: Protein of u 65.7 30 0.00064 21.5 6.7 42 81-123 6-47 (50)
26 KOG1733 Mitochondrial import i 49.7 91 0.002 22.0 7.3 50 78-127 29-85 (97)
27 PF02953 zf-Tim10_DDP: Tim10/D 41.6 83 0.0018 20.2 4.8 28 100-127 37-64 (66)
28 KOG4841 Dolichol-phosphate man 40.6 22 0.00048 24.8 1.9 26 107-132 66-91 (95)
29 PLN03207 stomagen; Provisional 39.4 35 0.00076 24.5 2.8 17 14-33 20-36 (113)
30 PF06404 PSK: Phytosulfokine p 36.2 25 0.00055 24.2 1.6 17 22-38 8-24 (81)
31 PLN02749 Uncharacterized prote 35.6 2.1E+02 0.0046 22.2 6.8 59 106-165 65-123 (173)
32 PF14290 DUF4370: Domain of un 32.5 2.1E+02 0.0045 23.4 6.5 59 106-165 131-189 (239)
33 PF08285 DPM3: Dolichol-phosph 30.3 35 0.00076 24.0 1.6 26 107-132 62-87 (91)
34 PRK09634 nusB transcription an 27.3 1.6E+02 0.0035 24.0 5.2 24 140-163 72-95 (207)
35 KOG4162 Predicted calmodulin-b 25.2 6.7E+02 0.015 24.7 9.5 84 65-154 474-562 (799)
36 KOG4514 Uncharacterized conser 23.9 3.9E+02 0.0084 21.5 7.3 58 66-128 121-179 (222)
37 PF10360 DUF2433: Protein of u 22.8 92 0.002 23.6 2.8 21 181-201 48-68 (132)
38 PF09680 Tiny_TM_bacill: Prote 22.7 79 0.0017 16.6 1.7 13 11-23 6-18 (24)
39 TIGR01732 tiny_TM_bacill conse 22.1 92 0.002 16.7 1.9 13 11-23 8-20 (26)
40 PF06589 CRA: Circumsporozoite 21.6 76 0.0016 24.1 2.1 15 9-23 3-17 (157)
41 PF08287 DASH_Spc19: Spc19; I 21.6 2.5E+02 0.0054 21.6 5.1 25 108-132 2-26 (153)
42 PF13127 DUF3955: Protein of u 20.8 97 0.0021 20.2 2.2 21 2-23 34-54 (63)
43 cd07593 BAR_MUG137_fungi The B 20.7 4.7E+02 0.01 21.3 6.9 57 104-164 147-203 (215)
44 PF11172 DUF2959: Protein of u 20.1 4.8E+02 0.01 21.2 8.3 56 43-100 5-60 (201)
45 PF11395 DUF2873: Protein of u 20.0 1.6E+02 0.0035 17.2 2.8 12 2-13 2-13 (43)
No 1
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=100.00 E-value=1.5e-32 Score=217.65 Aligned_cols=154 Identities=34% Similarity=0.561 Sum_probs=141.5
Q ss_pred CCcchhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHH
Q 042707 33 QSETNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCV 112 (203)
Q Consensus 33 ~~~~~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~ 112 (203)
+..++...|+.+|++|+||++|+++|.++|++...|+.+|+.++++.+..++..+..++.++... ..++..+.++++|.
T Consensus 24 ~~~~~~~~i~~~C~~t~~~~~C~~~L~~~~~~~~ad~~~la~~ai~~a~~~~~~~~~~i~~l~~~-~~~~~~~~al~~C~ 102 (178)
T TIGR01614 24 SLNATQSLIKRICKKTEYPNFCISTLKSDPSSAKADLQGLANISVSAALSNASDTLDHISKLLLT-KGDPRDKSALEDCV 102 (178)
T ss_pred CCcchHHHHHHHHcCCCChHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHH
Confidence 55678899999999999999999999999988778999999999999999999999999998764 34789999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 042707 113 DQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLAL 192 (203)
Q Consensus 113 e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLai 192 (203)
++|++++++|+++++++..+ +++|+++|||+|+++++||+|||.+.+ +..+++|...+.++.+|++|+|+|
T Consensus 103 ~~y~~a~~~L~~a~~~l~~~-------~~~d~~~~ls~a~~~~~tC~d~f~~~~--~~~~~~l~~~~~~~~~l~s~alai 173 (178)
T TIGR01614 103 ELYSDAVDALDKALASLKSK-------DYSDAETWLSSALTDPSTCEDGFEELG--GIVKSPLTKRNNNVKKLSSITLAI 173 (178)
T ss_pred HHHHHHHHHHHHHHHHHHhc-------chhHHHHHHHHHHcccchHHHHhccCC--CCccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865 789999999999999999999999764 357889999999999999999999
Q ss_pred HHhh
Q 042707 193 VNSY 196 (203)
Q Consensus 193 i~~l 196 (203)
++.+
T Consensus 174 ~~~~ 177 (178)
T TIGR01614 174 IKML 177 (178)
T ss_pred HHhc
Confidence 9875
No 2
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=100.00 E-value=3.8e-32 Score=208.83 Aligned_cols=147 Identities=39% Similarity=0.678 Sum_probs=136.3
Q ss_pred chhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 042707 36 TNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQL 115 (203)
Q Consensus 36 ~~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y 115 (203)
.....|+.+|++|+||++|+++|.++|++...|+.+|++++++.+++++..+..+++++.+ ...++..+.+|++|.++|
T Consensus 2 ~~~~~i~~~C~~T~~~~~C~~~L~~~~~~~~~d~~~l~~~ai~~~~~~a~~~~~~~~~l~~-~~~~~~~~~al~~C~~~y 80 (148)
T smart00856 2 PTSKLIDSICKSTDYPDFCVSSLSSDPSSSATDPKDLAKIAIKVALSQATKTLSFISSLLK-KTKDPRLKAALKDCLELY 80 (148)
T ss_pred CHHHHHHHHhcCCCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999998888999999999999999999999999998875 457899999999999999
Q ss_pred HHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 042707 116 RDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLAL 192 (203)
Q Consensus 116 ~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLai 192 (203)
++++++|++++.++..+ +++|+++|||+|+++++||+|||.+.+ +.++++|...+.++.+|++|+|+|
T Consensus 81 ~~a~~~L~~a~~~l~~~-------~~~d~~~~lsaa~t~~~tC~d~f~~~~--~~~~~~l~~~~~~~~~l~s~aLai 148 (148)
T smart00856 81 DDAVDSLEKALEELKSG-------DYDDVATWLSAALTDQDTCLDGFEEND--DKVKSPLTKRNDNLEKLTSNALAI 148 (148)
T ss_pred HHHHHHHHHHHHHHHhc-------chhHHHHHHHHHhcCcchHHhHhccCC--cchhHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999865 689999999999999999999999743 468999999999999999999986
No 3
>PLN02314 pectinesterase
Probab=100.00 E-value=1.5e-31 Score=244.80 Aligned_cols=161 Identities=31% Similarity=0.498 Sum_probs=141.9
Q ss_pred hhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 042707 37 NTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLR 116 (203)
Q Consensus 37 ~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y~ 116 (203)
+...|+.+|+.|+||++|+++|++.|.+...+|++|++++++++++++..+...++++... ..++..+.||+||+|+|+
T Consensus 69 ~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~al~vti~~a~~a~~~~~~L~~~-~~~~~~k~AL~DC~Elld 147 (586)
T PLN02314 69 PATSLKAVCSVTRYPESCISSISSLPTSNTTDPETLFKLSLKVAIDELSKLSDLPQKLINE-TNDERLKSALRVCETLFD 147 (586)
T ss_pred HHHHHHHhccCCCChHHHHHHHhcccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHH
Confidence 5579999999999999999999999987788999999999999999999999999888653 578899999999999999
Q ss_pred HHHHHHHHHHHHhcccccch--hhhhhhHHHHHHHHhhcchhhHHhhhcCCCC----CchhhhHHHHHHHHHHHHHHHHH
Q 042707 117 DAVDELQNSISEMGRNERSN--FALQMNNVQTWVSAALTNEDTCMDGFSRKSM----NGNVKATVRRQISNVAHLTSNGL 190 (203)
Q Consensus 117 ~a~d~L~~A~~~L~~~~~~~--~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~----~~~~~~~l~~~~~~~~~L~snaL 190 (203)
+++|+|++++.+|...+... +.+.++|++|||||||||++||+|||++.+. +++++..|...+.++.+|+||+|
T Consensus 148 dAid~L~~Sl~~l~~~~~~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~~~~k~~~s~vk~~~~~~l~n~~eLtSNaL 227 (586)
T PLN02314 148 DAIDRLNDSISSMQVGEGEKILSSSKIDDLKTWLSATITDQETCIDALQELSQNKYANSTLTNEVKTAMSNSTEFTSNSL 227 (586)
T ss_pred HHHHHHHHHHHHHhhcccccccccccHHHHHhHHHHHhcCHhHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997543221 2457899999999999999999999986533 35688889999999999999999
Q ss_pred HHHHhhhc
Q 042707 191 ALVNSYAS 198 (203)
Q Consensus 191 aii~~l~~ 198 (203)
||++.+..
T Consensus 228 AIi~~l~~ 235 (586)
T PLN02314 228 AIVSKILG 235 (586)
T ss_pred HHHhhhcc
Confidence 99998664
No 4
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=99.98 E-value=4.8e-31 Score=241.30 Aligned_cols=162 Identities=27% Similarity=0.539 Sum_probs=141.7
Q ss_pred hhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCHHHHHHHHHHHHHH
Q 042707 37 NTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQ-GLNPREAAALYDCVDQL 115 (203)
Q Consensus 37 ~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~-~~~~~~~~al~dC~e~y 115 (203)
....|+.+|+.|+||++|+++|++.|.+...++++|++++|+++++++..+...++++.... +.+++.+.||+||+|+|
T Consensus 58 ~~~~Iks~C~~T~YP~~C~ssLs~~~~~~~~~~~~Li~~sL~vtl~~a~~a~~~vs~L~~~~~~l~~r~k~AL~DClELl 137 (587)
T PLN02313 58 SHAVLKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETI 137 (587)
T ss_pred HhHHHHHhccCCCChHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 45699999999999999999999988776779999999999999999999999998886532 46888999999999999
Q ss_pred HHHHHHHHHHHHHhccccc-chhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 042707 116 RDAVDELQNSISEMGRNER-SNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVN 194 (203)
Q Consensus 116 ~~a~d~L~~A~~~L~~~~~-~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~ 194 (203)
++++|+|++++..|...+. ..+.++++|++||||||||||+||+|||++.+.++.+++.|...+.++.+|+||+|||++
T Consensus 138 ddavD~L~~Sl~~l~~~~~~~~~~~~~dDlqTWLSAALTnq~TClDGF~~~~~~~~vk~~m~~~l~n~teLtSNALAIv~ 217 (587)
T PLN02313 138 DETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIK 217 (587)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHhcchhhHHHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999985321 223446899999999999999999999986544457899999999999999999999999
Q ss_pred hhhc
Q 042707 195 SYAS 198 (203)
Q Consensus 195 ~l~~ 198 (203)
.+..
T Consensus 218 ~~~~ 221 (587)
T PLN02313 218 NMTE 221 (587)
T ss_pred cccc
Confidence 8764
No 5
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=5e-31 Score=240.94 Aligned_cols=157 Identities=29% Similarity=0.486 Sum_probs=137.7
Q ss_pred hhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 042707 37 NTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLR 116 (203)
Q Consensus 37 ~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y~ 116 (203)
+...|+.+|+.|.||++|+++|.+.|.+...+|++|++++++++++++.++......+.. ...++..+.||+||+|+|+
T Consensus 72 ~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~slnvtl~~~~~a~~~s~~l~~-~~~~~r~k~AL~DClELld 150 (587)
T PLN02484 72 PTQAISKTCSKTRFPNLCVDSLLDFPGSLTASESDLIHISFNMTLQHFSKALYLSSTISY-VQMPPRVRSAYDSCLELLD 150 (587)
T ss_pred hhHHHHHhccCCCChHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHHHHHHHHHH
Confidence 456999999999999999999999998777899999999999999999987766554443 4568899999999999999
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 042707 117 DAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSY 196 (203)
Q Consensus 117 ~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~l 196 (203)
+++|+|++++..|...+. .+.++|++|||||||||++||+|||++.+ +++++++|.+.+.++.+|+||+|||++.+
T Consensus 151 dAid~L~~Sl~~l~~~~~---~~~~~DvkTWLSAALTnq~TClDGF~e~~-~~~vk~~m~~~l~~l~~LtSNALAIi~~~ 226 (587)
T PLN02484 151 DSVDALSRALSSVVPSSG---GGSPQDVVTWLSAALTNHDTCTEGFDGVN-GGEVKDQMTGALKDLSELVSNCLAIFSAS 226 (587)
T ss_pred HHHHHHHHHHHHHhcccc---ccchHHHHhHHHHHhccHhhHHHHhhccc-ccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999985321 33679999999999999999999998652 24689999999999999999999999987
Q ss_pred hc
Q 042707 197 AS 198 (203)
Q Consensus 197 ~~ 198 (203)
.+
T Consensus 227 ~~ 228 (587)
T PLN02484 227 NG 228 (587)
T ss_pred cc
Confidence 65
No 6
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=7.2e-31 Score=239.24 Aligned_cols=155 Identities=29% Similarity=0.414 Sum_probs=137.0
Q ss_pred hhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCHHHHHHHHHHHHHH
Q 042707 37 NTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQ-GLNPREAAALYDCVDQL 115 (203)
Q Consensus 37 ~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~-~~~~~~~~al~dC~e~y 115 (203)
....|+.+|+.|.||++|+++|.++|.+...+|++|++++++++++++..+...+.++.... ..++..+.||+||+|+|
T Consensus 63 ~~~~Ik~~C~~T~Yp~lC~sSLs~~~~s~~~~p~~L~~~al~vti~~~~~a~~~~s~l~~~~~~~d~~~k~AL~DC~ELl 142 (565)
T PLN02468 63 ISTSVKAVCDVTLYKDSCYETLAPAPKASQLQPEELFKYAVKVAINELSKASQAFSNSEGFLGVKDNMTNAALNACQELL 142 (565)
T ss_pred hhHHHHHhccCCCChHHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHH
Confidence 45699999999999999999999999877789999999999999999999988877775432 35889999999999999
Q ss_pred HHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 042707 116 RDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNS 195 (203)
Q Consensus 116 ~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~ 195 (203)
++++++|++++.++.... ..+.++|++|||||||||++||+|||++. .++++|...+.++.+|+||+|||++.
T Consensus 143 ddaid~L~~Sl~~l~~~~---~~~~~dDl~TWLSAAlTnq~TClDGF~e~----~vk~~~~~~l~n~~eLtSNaLAIi~~ 215 (565)
T PLN02468 143 DLAIDNLNNSLTSSGGVS---VLDNVDDLRTWLSSAGTYQETCIDGLAEP----NLKSFGENHLKNSTELTSNSLAIITW 215 (565)
T ss_pred HHHHHHHHHHHHHHhccc---cccchHHHHHHHHHHhcchhhhhhhhccc----CchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999987432 13467999999999999999999999863 57899999999999999999999998
Q ss_pred hhc
Q 042707 196 YAS 198 (203)
Q Consensus 196 l~~ 198 (203)
+..
T Consensus 216 l~~ 218 (565)
T PLN02468 216 IGK 218 (565)
T ss_pred ccc
Confidence 654
No 7
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=1.9e-30 Score=238.58 Aligned_cols=159 Identities=30% Similarity=0.507 Sum_probs=137.5
Q ss_pred chhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 042707 36 TNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQL 115 (203)
Q Consensus 36 ~~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y 115 (203)
+..+.|+..|+.|+||++|+++|..++ ....+|++|++++|+++++++..+...+..+.. ...+++++.|++||+|+|
T Consensus 51 ~~~~~Ikt~C~sT~YP~lC~sSLs~~~-~~~~~p~dLi~aaL~vTl~a~~~a~~~~s~L~~-~~~~~r~k~AL~DClELl 128 (670)
T PLN02217 51 TSVKAIKDVCAPTDYKETCEDTLRKDA-KNTSDPLELVKTAFNATMKQISDVAKKSQTMIE-LQKDPRTKMALDQCKELM 128 (670)
T ss_pred hHHHHHHHHhcCCCCcHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHH
Confidence 344599999999999999999999988 446699999999999999999999988887743 245788999999999999
Q ss_pred HHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 042707 116 RDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNS 195 (203)
Q Consensus 116 ~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~ 195 (203)
++++|+|++++..|...+...+....+|++||||||||||+||.|||++.+ +.++..|...+.++.+|++|+|||++.
T Consensus 129 ddAvDeL~~Sl~~L~~~~~~~~~~~~dDvqTWLSAALTnQdTClDGF~~~~--~~vk~~m~~~l~nvseLtSNALAmv~~ 206 (670)
T PLN02217 129 DYAIGELSKSFEELGKFEFHKVDEALIKLRIWLSATISHEQTCLDGFQGTQ--GNAGETIKKALKTAVQLTHNGLAMVSE 206 (670)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhchhHHHHhhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999997433222334579999999999999999999998643 468899999999999999999999998
Q ss_pred hhc
Q 042707 196 YAS 198 (203)
Q Consensus 196 l~~ 198 (203)
+..
T Consensus 207 lss 209 (670)
T PLN02217 207 MSN 209 (670)
T ss_pred ccc
Confidence 654
No 8
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=2.4e-30 Score=235.86 Aligned_cols=158 Identities=21% Similarity=0.400 Sum_probs=136.8
Q ss_pred hhHHHHcccCCCCChhhHHHhhcc-cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCHHHHHHHHHHHHH
Q 042707 37 NTQFIKTSCRVTTYPDLCITTLSG-YATKIQASPKLLASTALSVALKTALVTSTTMNKLSKS-QGLNPREAAALYDCVDQ 114 (203)
Q Consensus 37 ~~~~I~~~C~~T~~p~~C~~tL~~-~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~-~~~~~~~~~al~dC~e~ 114 (203)
....|+..|+.|+||++|+++|.+ .|. ..+|++|++++++++++++..+...+..+... .+.+++.+.|++||+|+
T Consensus 52 ~~~~Ik~~C~~T~YP~lC~ssLs~a~~~--~~~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~~~~~~r~k~Al~DC~EL 129 (572)
T PLN02990 52 TTKAVEAVCAPTDYKETCVNSLMKASPD--STQPLDLIKLGFNVTIRSINDSIKKASGELKAKAANDPETKGALELCEKL 129 (572)
T ss_pred hhHHHHHhhcCCCCcHHHHHHhhhcccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence 456999999999999999999998 443 56899999999999999999998888776532 25689999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 042707 115 LRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVN 194 (203)
Q Consensus 115 y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~ 194 (203)
|++++|+|+++++.|...+...+...++|++|||||||||++||+|||++.+ +++++.|...+.++.+|+||+|||++
T Consensus 130 lddAvdeL~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~e~~--s~lk~~~~~~l~nv~~LtSNALAiv~ 207 (572)
T PLN02990 130 MNDATDDLKKCLDNFDGFSIDQIEDFVEDLRVWLSGSIAYQQTCMDTFEEIK--SNLSQDMLKIFKTSRELTSNGLAMIT 207 (572)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHhccHhhHHHhhhccc--hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998543333444679999999999999999999998643 47899999999999999999999999
Q ss_pred hhhc
Q 042707 195 SYAS 198 (203)
Q Consensus 195 ~l~~ 198 (203)
.+..
T Consensus 208 ~~~~ 211 (572)
T PLN02990 208 NISN 211 (572)
T ss_pred hhhc
Confidence 8665
No 9
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=2.4e-30 Score=234.61 Aligned_cols=187 Identities=21% Similarity=0.371 Sum_probs=150.2
Q ss_pred chhHHHHHHHHHHHHHhh---hhccCCCCCCCcchhHHHHcccCCCCChhhHHHhhccccccc-CCCHHHHHHHHHHHHH
Q 042707 6 FSHALTLLIFIQFATYMN---TYCSAARPVQSETNTQFIKTSCRVTTYPDLCITTLSGYATKI-QASPKLLASTALSVAL 81 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~I~~~C~~T~~p~~C~~tL~~~p~s~-~~d~~~l~~~ai~~a~ 81 (203)
|+++-.++||+||.-+++ .++.++...+.++..+.|+..|+.|+||++|+++|.+++... ..++..++.++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iks~C~~T~YP~lC~~sLss~~~~~~s~~~~~ll~~sL~~A~ 82 (541)
T PLN02416 3 FSSLNLLLFLLFFSPFFFSSAWYSNASYTTSLDPHLSSLTSFCKSTPYPDACFDSLKLSISINISPNILNFLLQTLQTAI 82 (541)
T ss_pred hhHHHHHHHHHHcchhhccchhhcccccccCCchHHHHHHHhcCCCCChHHHHHHHhhcccccCCCCHHHHHHHHHHHHH
Confidence 455544556666655544 134455555556677899999999999999999999987532 4567789999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhh
Q 042707 82 KTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDG 161 (203)
Q Consensus 82 ~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dg 161 (203)
..+..+...++.+......++..+.|++||.|+|++++|+|++++.+|+..+ .+.++|++|||||||||++||+||
T Consensus 83 ~~~~~~s~l~s~~~~~~~~~~~~k~AL~DC~El~~dAvD~L~~Sl~~L~~~~----~~~~~DvqTWLSAALT~q~TC~DG 158 (541)
T PLN02416 83 SEAGKLTNLLSGAGQSSNIIEKQRGTIQDCKELHQITVSSLKRSVSRIQAGD----SRKLADARAYLSAALTNKNTCLEG 158 (541)
T ss_pred HHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccchhhHHHHHHHHhcchhhHHhh
Confidence 9888888777665333334688899999999999999999999999997532 136899999999999999999999
Q ss_pred hcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042707 162 FSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYAS 198 (203)
Q Consensus 162 f~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~l~~ 198 (203)
|++.+ +.++++|...+.++.+|++|+|||++.+..
T Consensus 159 F~~~~--~~~~~~i~~~~~~v~qltSNALAlv~~~~~ 193 (541)
T PLN02416 159 LDSAS--GPLKPKLVNSFTSTYKHVSNSLSMLPKSRR 193 (541)
T ss_pred hhhcC--cchhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 98753 467899999999999999999999988664
No 10
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=3.6e-30 Score=234.49 Aligned_cols=162 Identities=23% Similarity=0.262 Sum_probs=138.5
Q ss_pred CCCCcchhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CCHHHHHHH
Q 042707 31 PVQSETNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQG--LNPREAAAL 108 (203)
Q Consensus 31 ~~~~~~~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~--~~~~~~~al 108 (203)
....+.....++.+|+.|+||++|+++|++. ...++.++++++|+++++++..+...+.++..... .+++.+.||
T Consensus 25 ~~~~~~~~~~~~s~C~~T~YP~~C~ssLs~s---~~~d~~~l~~aaL~~tl~~a~~a~~~vs~L~~~~~~~~~~r~k~AL 101 (566)
T PLN02713 25 SDPPPSTPVSPSTICNTTPDPSFCKSVLPHN---QPGNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRNSTLLSKSAIRAL 101 (566)
T ss_pred cCCCcCCCCCCccccCCCCChHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 3444455667888999999999999999763 25689999999999999999999999998875432 388999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHH
Q 042707 109 YDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSN 188 (203)
Q Consensus 109 ~dC~e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~sn 188 (203)
+||.|+|++++|+|++++.+|+..+...+.+.++|++|||||||||++||+|||++.+.++.++..|...+.++.+|+||
T Consensus 102 ~DC~ELlddavD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~~k~~v~~~l~nvt~LtSN 181 (566)
T PLN02713 102 EDCQFLAGLNIDFLLSSFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAASSAWSVRNGLAVPLSNDTKLYSV 181 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhcchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985433224557899999999999999999999997654556788899999999999999
Q ss_pred HHHHHHh
Q 042707 189 GLALVNS 195 (203)
Q Consensus 189 aLaii~~ 195 (203)
+|||++.
T Consensus 182 aLAlv~~ 188 (566)
T PLN02713 182 SLALFTK 188 (566)
T ss_pred HHHHhcc
Confidence 9999987
No 11
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=4.8e-30 Score=233.33 Aligned_cols=154 Identities=21% Similarity=0.404 Sum_probs=130.7
Q ss_pred chhHHHHcccCCCCChhhHHHhhccccc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Q 042707 36 TNTQFIKTSCRVTTYPDLCITTLSGYAT-KIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQ 114 (203)
Q Consensus 36 ~~~~~I~~~C~~T~~p~~C~~tL~~~p~-s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~ 114 (203)
.....|+..|+.|+||++|+++|++++. ....++.++++++|+++++++..+...+..+......+.....|++||+|+
T Consensus 42 ~~~~~I~s~C~~T~YP~lC~sSLs~~~~~~~~~~p~~Li~aAL~vsl~~a~~a~~~v~~L~~~~~~~~~~~~AL~DC~EL 121 (553)
T PLN02708 42 STPPQILLACNATRFPDTCVSSLSNAGRVPPDPKPIQIIQSAISVSRENLKTAQSMVKSILDSSAGNVNRTTAATNCLEV 121 (553)
T ss_pred CccHHHHHhccCCCCcHHHHHHHhhccCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 5678999999999999999999999885 345689999999999999999999999998875432233345899999999
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 042707 115 LRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVN 194 (203)
Q Consensus 115 y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~ 194 (203)
|++++|+|++++..+... .++|++||||||||||+||.|||++.+..+.++..| ..++++.+|+||+|||++
T Consensus 122 lddavd~L~~Sl~~L~~~-------~~~DvqTWLSAALTnq~TClDGF~~~~~~~~v~~~~-~~L~nvs~LtSNSLAmv~ 193 (553)
T PLN02708 122 LSNSEHRISSTDIALPRG-------KIKDARAWMSAALLYQYDCWSALKYVNDTSQVNDTM-SFLDSLIGLTSNALSMMA 193 (553)
T ss_pred HHHHHHHHHHHHHHhhhc-------chHHHHHHHHHHhccHhHHHHHhhccCccchHHHHH-HHHHHHHHHHHHHHHhhh
Confidence 999999999999888743 689999999999999999999998653223466665 688999999999999999
Q ss_pred hhh
Q 042707 195 SYA 197 (203)
Q Consensus 195 ~l~ 197 (203)
.+.
T Consensus 194 ~~~ 196 (553)
T PLN02708 194 SYD 196 (553)
T ss_pred ccc
Confidence 853
No 12
>PLN02197 pectinesterase
Probab=99.97 E-value=1.2e-29 Score=231.22 Aligned_cols=154 Identities=19% Similarity=0.382 Sum_probs=132.7
Q ss_pred hhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhcCCCHHHHHHHHHHHHH
Q 042707 37 NTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLS--KSQGLNPREAAALYDCVDQ 114 (203)
Q Consensus 37 ~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~--~~~~~~~~~~~al~dC~e~ 114 (203)
....|+.+|+.|+||++|+++|++.+ ..+|++|++++++++++++..+...+..+. ..+..+++++.|++||.|+
T Consensus 37 ~~k~I~s~C~~T~YP~lC~ssLs~~~---s~~p~~L~~aaL~vtl~~~~~a~~~~s~l~~~~~~~~~~r~k~Al~DC~eL 113 (588)
T PLN02197 37 QMKAVQGICQSTSDKASCVKTLEPVK---SDDPNKLIKAFMLATKDAITKSSNFTGQTEGNMGSSISPNNKAVLDYCKRV 113 (588)
T ss_pred hHHHHHHhcCCCCChHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHH
Confidence 34489999999999999999999988 458999999999999999999998888663 1224588999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 042707 115 LRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVN 194 (203)
Q Consensus 115 y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~ 194 (203)
|++++|+|++++.+|.. ....+.+.++|++|||||||||++||.|||++. .++..|...+.++.+|+||+|||++
T Consensus 114 l~davd~L~~Sl~~l~~-~~~~~~~~~~DvqTWLSAALTnq~TClDGf~~~----~~k~~v~~~l~nv~~LtSNaLAiv~ 188 (588)
T PLN02197 114 FMYALEDLSTIVEEMGE-DLNQIGSKIDQLKQWLTGVYNYQTDCLDDIEED----DLRKTIGEGIANSKILTSNAIDIFH 188 (588)
T ss_pred HHHHHHHHHHHHHHHhh-cccccccchhhHHHHHHHHHhChhhhhccccCc----chHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999973 111223357999999999999999999999863 5788899999999999999999998
Q ss_pred hhhc
Q 042707 195 SYAS 198 (203)
Q Consensus 195 ~l~~ 198 (203)
.+..
T Consensus 189 ~ls~ 192 (588)
T PLN02197 189 SVVS 192 (588)
T ss_pred ccch
Confidence 8654
No 13
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=99.97 E-value=1e-29 Score=195.72 Aligned_cols=148 Identities=39% Similarity=0.629 Sum_probs=127.8
Q ss_pred chhHHHHcccCCCCChh-hHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Q 042707 36 TNTQFIKTSCRVTTYPD-LCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQ 114 (203)
Q Consensus 36 ~~~~~I~~~C~~T~~p~-~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~ 114 (203)
++...|+.+|++|+||. +|+++|.+++.....|+.+|++++|++++.++..+..++.++....+.++..+.+|++|.++
T Consensus 2 s~~~~I~~~C~~T~~~~~~C~~~L~~~~~~~~~d~~~l~~~av~~a~~~~~~a~~~~~~l~~~~~~~~~~~~~l~~C~~~ 81 (152)
T PF04043_consen 2 STSSLIQDICKSTPYPYNLCLSTLSSDPSSSAADPKELARIAVQAALSNATSASAFISKLLKNPSKDPNAKQALQDCQEL 81 (152)
T ss_dssp --HHHHHHHHCTSS--HHHHHHHHHTCCCGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-S-THHHHHHHHHHHHH
T ss_pred chHHHHHHHhhCCCCCcHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHhhHHHHHHHHH
Confidence 45789999999999777 99999999987778999999999999999999999999998886546789999999999999
Q ss_pred HHHHHHHHHHHHHHh--cccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 042707 115 LRDAVDELQNSISEM--GRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLAL 192 (203)
Q Consensus 115 y~~a~d~L~~A~~~L--~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLai 192 (203)
|++++++|++++++| ..+ +|+++++|||+|+++++||+|||.+.. ++++++|...+.++.+|++|+|+|
T Consensus 82 y~~a~~~l~~a~~~l~~~~~-------~~~~~~~~lsaa~~~~~tC~~~f~~~~--~~~~~~l~~~~~~~~~l~s~aLai 152 (152)
T PF04043_consen 82 YDDAVDSLQRALEALNSKNG-------DYDDARTWLSAALTNQDTCEDGFEEAG--SPVKSPLVQRNDNVEKLSSNALAI 152 (152)
T ss_dssp HHHHHHHHHHHHHHH--HHT--------HHHHHHHHHHHHHHHHHHHHHC-TTS--SS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccc-------hhHHHHHHHHHHHHHHHHHHHHhcccC--CCccchHHHHHHHHHHHHHHHhhC
Confidence 999999999999999 443 789999999999999999999995221 367899999999999999999997
No 14
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=2.4e-29 Score=227.98 Aligned_cols=155 Identities=22% Similarity=0.369 Sum_probs=135.7
Q ss_pred cchhHHHHcccCCCCChhhHHHhhcccccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHH
Q 042707 35 ETNTQFIKTSCRVTTYPDLCITTLSGYATK--IQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCV 112 (203)
Q Consensus 35 ~~~~~~I~~~C~~T~~p~~C~~tL~~~p~s--~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~ 112 (203)
....+.|+..|+.|+||++|+++|.+.+.+ ...+|.+|++++|+++++++..+...+.++.. ...++..+.|++||.
T Consensus 47 ~~~~~~Iks~C~~T~YP~~C~ssLs~~a~~~~~~~~p~~L~~aaL~vsl~~a~~a~~~vs~l~~-~~~~~~~~aAL~DC~ 125 (548)
T PLN02301 47 SSPPSLLQTLCDRAHDQDSCQAMVSEIATNTVMKLNRVDLLQVLLKESTPHLQNTIEMASEIRI-RINDPRDKAALADCV 125 (548)
T ss_pred CCchHHHHHHhcCCCChHHHHHHHhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCChHHHHHHHHHH
Confidence 355689999999999999999999988754 34589999999999999999999999998843 457889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 042707 113 DQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLAL 192 (203)
Q Consensus 113 e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLai 192 (203)
|+|++++|+|++++.+|+.... +.++|++|||||||||++||+|||++. .+++|...++++.+|++|+|||
T Consensus 126 ELl~davd~L~~Sl~~l~~~~~----~~~~Dv~TWLSAALT~q~TC~DGF~~~-----~~~~~~~~l~n~~qL~SNsLAi 196 (548)
T PLN02301 126 ELMDLSKDRIKDSVEALGNVTS----KSHADAHTWLSSVLTNHVTCLDGINGP-----SRQSMKPGLKDLISRARTSLAI 196 (548)
T ss_pred HHHHHHHHHHHHHHHHhhcccc----cchHHHHHHHHHHhcchhhHHhhhhhh-----hhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999875432 246899999999999999999999863 3678999999999999999999
Q ss_pred HHhhhcc
Q 042707 193 VNSYASI 199 (203)
Q Consensus 193 i~~l~~~ 199 (203)
++.+.+.
T Consensus 197 v~~l~~~ 203 (548)
T PLN02301 197 LVSVSPA 203 (548)
T ss_pred hcccccc
Confidence 9987643
No 15
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=2.3e-29 Score=227.80 Aligned_cols=168 Identities=26% Similarity=0.430 Sum_probs=141.5
Q ss_pred CCCCCCCcchhHHHHcccCCCCChhhHHHhhcccccc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHH
Q 042707 28 AARPVQSETNTQFIKTSCRVTTYPDLCITTLSGYATK-IQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAA 106 (203)
Q Consensus 28 ~~~~~~~~~~~~~I~~~C~~T~~p~~C~~tL~~~p~s-~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~ 106 (203)
++.+.++......|+..|+.|+||++|+++|.+.... ...+|++|++++|+++++++..+...+.++.. ...+++.+.
T Consensus 24 ~~~~~~~~~~~~~I~s~C~~T~YP~~C~ssLs~~~~~~~~~~p~~L~~aAL~vtl~~a~~a~~~v~~l~~-~~~~~r~~~ 102 (537)
T PLN02506 24 SSSPYQELNFQALIAQACQFVENHSSCVSNIQAELKKSGPRTPHSVLSAALKATLDEARLAIDMITKFNA-LSISYREQV 102 (537)
T ss_pred ccCchhhhhHHHHHHHHccCCCCcHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCChHHHH
Confidence 3445555677889999999999999999999986433 35789999999999999999999999988854 346788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc-chhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHH
Q 042707 107 ALYDCVDQLRDAVDELQNSISEMGRNER-SNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHL 185 (203)
Q Consensus 107 al~dC~e~y~~a~d~L~~A~~~L~~~~~-~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L 185 (203)
|++||+|+|++++++|.+++.+++.... .......+|++||||||||+++||+|||++.+ +++++.|...+.++.+|
T Consensus 103 Al~DC~EllddSvd~L~~Sl~el~~~~~~~~~~~~~~Dv~TWLSAALT~q~TC~DGF~~~~--~~~k~~v~~~l~nv~~L 180 (537)
T PLN02506 103 AIEDCKELLDFSVSELAWSLLEMNKIRAGHDNVAYEGNLKAWLSAALSNQDTCLEGFEGTD--RHLENFIKGSLKQVTQL 180 (537)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHhHHHHHhccHhHHHHhhhhcc--hhHHHHHHHHHHHHHHH
Confidence 9999999999999999999998863321 11112358999999999999999999998753 46888999999999999
Q ss_pred HHHHHHHHHhhhc
Q 042707 186 TSNGLALVNSYAS 198 (203)
Q Consensus 186 ~snaLaii~~l~~ 198 (203)
+||+|||++++..
T Consensus 181 tSNALAiv~~l~~ 193 (537)
T PLN02506 181 ISNVLAMYTQLHS 193 (537)
T ss_pred HHHHHHHHhhccc
Confidence 9999999998765
No 16
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=3.2e-29 Score=229.20 Aligned_cols=154 Identities=30% Similarity=0.456 Sum_probs=135.3
Q ss_pred hhHHHHcccCCCCChhhHHHhhccccc--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Q 042707 37 NTQFIKTSCRVTTYPDLCITTLSGYAT--KIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQ 114 (203)
Q Consensus 37 ~~~~I~~~C~~T~~p~~C~~tL~~~p~--s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~ 114 (203)
..+.|+.+|+.|+||++|+++|.++.. +...+|++|++++|+++++++..+...+.++. ..++..+.|++||.|+
T Consensus 78 ~~~~Ik~~C~~T~YP~~C~sSLs~~~~~~~~~~~p~~Ll~aAL~vtl~~~~~a~~~~~~l~---~~~~r~k~Al~DC~EL 154 (596)
T PLN02745 78 VDKIIQTVCNATLYKQTCENTLKKGTEKDPSLAQPKDLLKSAIKAVNDDLDKVLKKVLSFK---FENPDEKDAIEDCKLL 154 (596)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHH
Confidence 457899999999999999999998653 23578999999999999999999888877663 3588999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 042707 115 LRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVN 194 (203)
Q Consensus 115 y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~ 194 (203)
|++++++|++++.+|.. +...+.+.++|++|||||||||++||+|||++. .++++|...+.++.+|+||+|||++
T Consensus 155 lddAid~L~~Sl~~l~~-~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~----~l~s~m~~~l~~~~eLtSNALAiv~ 229 (596)
T PLN02745 155 VEDAKEELKASISRIND-EVNKLAKNVPDLNNWLSAVMSYQETCIDGFPEG----KLKSEMEKTFKSSQELTSNSLAMVS 229 (596)
T ss_pred HHHHHHHHHHHHHHHhh-cccccccchHHHHHHHHHHhccHhHHHhhhccc----chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999975 223345678999999999999999999999873 5889999999999999999999999
Q ss_pred hhhc
Q 042707 195 SYAS 198 (203)
Q Consensus 195 ~l~~ 198 (203)
.+..
T Consensus 230 ~lss 233 (596)
T PLN02745 230 SLTS 233 (596)
T ss_pred hhhh
Confidence 8765
No 17
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=99.97 E-value=4.2e-29 Score=226.44 Aligned_cols=158 Identities=23% Similarity=0.342 Sum_probs=129.7
Q ss_pred hHHHHcccCCCCChhhHHHhhcccccccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 042707 38 TQFIKTSCRVTTYPDLCITTLSGYATKIQ-ASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLR 116 (203)
Q Consensus 38 ~~~I~~~C~~T~~p~~C~~tL~~~p~s~~-~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y~ 116 (203)
...|+..|..|.||++|+++|.++|.+.. .++.+++++++++++.++.++...+..+.+ ...++..+.|++||.|+|+
T Consensus 34 ~~~Irs~C~~T~YP~lC~sSLs~~~~s~s~~~~~~l~~~~~~aAl~~a~sa~~~i~~l~~-~~~~~r~~~AL~DC~ELl~ 112 (539)
T PLN02995 34 STDIDGWCDKTPYPDPCKCYFKNHNGFRQPTQISEFRVMLVEAAMDRAISARDELTNSGK-NCTDFKKQAVLADCIDLYG 112 (539)
T ss_pred hHHHHhhcCCCCChHHHHHHHhhccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHH
Confidence 34999999999999999999999887533 488999999999999999999999988854 2467889999999999999
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 042707 117 DAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSY 196 (203)
Q Consensus 117 ~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~l 196 (203)
+++|+|++++++|+........+.++|++|||||||||++||+|||++.+..+.+++.+. ..++.+|++|+|||++.+
T Consensus 113 DAvD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALT~q~TC~DGF~~~~~~~~v~~~v~--~~~~~~ltSNaLAi~~~l 190 (539)
T PLN02995 113 DTIMQLNRTLQGVSPKAGAAKRCTDFDAQTWLSTALTNTETCRRGSSDLNVSDFITPIVS--NTKISHLISNCLAVNGAL 190 (539)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhcchhhhhhhhccccchhhhhhhhh--hhhHHHHHHHHHHHhhhh
Confidence 999999999999975422111235689999999999999999999987543322333332 267999999999999987
Q ss_pred hc
Q 042707 197 AS 198 (203)
Q Consensus 197 ~~ 198 (203)
.+
T Consensus 191 ~~ 192 (539)
T PLN02995 191 LT 192 (539)
T ss_pred cc
Confidence 54
No 18
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=99.96 E-value=1.3e-28 Score=221.48 Aligned_cols=156 Identities=22% Similarity=0.370 Sum_probs=136.0
Q ss_pred cchhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--CHHHHHHHHHHH
Q 042707 35 ETNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGL--NPREAAALYDCV 112 (203)
Q Consensus 35 ~~~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~--~~~~~~al~dC~ 112 (203)
......|+..|+.|+||++|+++|++.+. +|.+|++++|++++.++..+...+.++....+. +++.+.+++||.
T Consensus 19 ~~~~~~I~~~C~~T~YP~~C~ssLs~~~~----~p~~Li~aal~vtl~~~~~a~~~~~~l~~~~~~~~~~r~~~Al~DC~ 94 (497)
T PLN02698 19 FAYQNEVQRECSFTKYPSLCVQTLRGLRH----DGVDIVSVLVNKTISETNLPLSSSMGSSYQLSLEEATYTPSVSDSCE 94 (497)
T ss_pred hhHHHHHHHhccCCCChHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcChHHHHHHHHHH
Confidence 46788999999999999999999999774 899999999999999999999999887654333 377889999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCC--CchhhhHHHHHHHHHHHHHHHHH
Q 042707 113 DQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSM--NGNVKATVRRQISNVAHLTSNGL 190 (203)
Q Consensus 113 e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~--~~~~~~~l~~~~~~~~~L~snaL 190 (203)
|+|++++++|++++.+|..... +.++|++|||||||||++||+|||.+... ++++++.|...+.++.+|++|+|
T Consensus 95 Ell~dsvd~L~~Sl~~l~~~~~----~~~~Dv~TWLSAALT~q~TClDGF~~~~~~~~~~v~~~i~~~l~~~~~ltSNAL 170 (497)
T PLN02698 95 RLMKMSLKRLRQSLLALKGSSR----KNKHDIQTWLSAALTFQQACKDSIVDSTGYSGTSAISQISQKMDHLSRLVSNSL 170 (497)
T ss_pred HHHHHHHHHHHHHHHHHhhccc----cchhHHHHHHHHhhcchhhHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999885421 36799999999999999999999954211 24689999999999999999999
Q ss_pred HHHHhhhc
Q 042707 191 ALVNSYAS 198 (203)
Q Consensus 191 aii~~l~~ 198 (203)
||++.+..
T Consensus 171 Amv~~l~~ 178 (497)
T PLN02698 171 ALVNRITP 178 (497)
T ss_pred HHHhhhhc
Confidence 99998876
No 19
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=99.95 E-value=1.1e-27 Score=217.29 Aligned_cols=150 Identities=27% Similarity=0.367 Sum_probs=129.6
Q ss_pred HcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCCHHHHHHHHHHHHHHHH
Q 042707 42 KTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKS----QGLNPREAAALYDCVDQLRD 117 (203)
Q Consensus 42 ~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~----~~~~~~~~~al~dC~e~y~~ 117 (203)
..+|+.|+||++|+++|.+.+.+ ..+|.++++++|++++.++..+...+.++... .+.+++.+.|++||+|++++
T Consensus 3 ~~~C~~T~YP~lC~ssLs~~~~~-~~~p~~l~~aaL~vtl~~a~~a~~~vs~l~~~~~~~~~~~~r~~~AL~DC~ELldd 81 (538)
T PLN03043 3 SLACKSTLYPKLCRSILSTVKSS-PSDPYEYGKFSVKQCLKQARRLSKVINYYLTHENQPGKMTHEEIGALADCGELSEL 81 (538)
T ss_pred CcccCCCCCcHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999987754 35899999999999999999999999887531 23578889999999999999
Q ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 042707 118 AVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNS 195 (203)
Q Consensus 118 a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~ 195 (203)
++|+|.+++.+|...+. ...+..+|++|||||||||++||+|||.+.+ +.++..|...+.++.+|+||+|||++.
T Consensus 82 SvD~L~~Sl~~L~~~~~-~~~~~~~DvqTWLSAALTnqdTClDGF~~~~--~~~k~~i~~~l~nvt~LtSNaLAlv~~ 156 (538)
T PLN03043 82 NVDYLETISSELKSAEL-MTDALVERVTSLLSGVVTNQQTCYDGLVDSK--SSFAAALGAPLGNLTRLYSVSLGLVSH 156 (538)
T ss_pred HHHHHHHHHHHHhcccc-ccccchhhHHHhHHHhhcChhhhhchhhccc--hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999975421 1233568999999999999999999998653 468889999999999999999999985
No 20
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=99.92 E-value=1e-23 Score=190.22 Aligned_cols=128 Identities=27% Similarity=0.466 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhH
Q 042707 66 QASPKLLASTALSVALKTALVTSTTMNKLSKSQ--GLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNN 143 (203)
Q Consensus 66 ~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~--~~~~~~~~al~dC~e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d 143 (203)
..+|.+|++++|+++++++..+...+.++.... +.+++++.|++||.|+|++++++|++++..|.... +.++|
T Consensus 48 ~~~~~~L~~aaL~vtl~~a~~a~~~vs~L~~~~~~~l~~r~~~Al~DC~El~~davd~L~~S~~~l~~~~-----~~~~D 122 (530)
T PLN02933 48 TKTIPELIIADLNLTILKVNLASSNFSDLQTRLGPNLTHRERCAFEDCLGLLDDTISDLTTAISKLRSSS-----PEFND 122 (530)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cchhH
Confidence 568999999999999999999999999886532 46889999999999999999999999999987521 25799
Q ss_pred HHHHHHHhhcchhhHHhhhcCCC------CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042707 144 VQTWVSAALTNEDTCMDGFSRKS------MNGNVKATVRRQISNVAHLTSNGLALVNSYAS 198 (203)
Q Consensus 144 ~~twLSAAlt~~~TC~Dgf~~~~------~~~~~~~~l~~~~~~~~~L~snaLaii~~l~~ 198 (203)
++|||||||||++||+|||++.+ .+++++..|...+.++.+|+||+|||++.++.
T Consensus 123 v~TWLSAALT~q~TC~DGF~~~~~~~~~~~~~~vk~~v~~~l~~v~~LtSNALAlv~~ls~ 183 (530)
T PLN02933 123 VSMLLSNAMTNQDTCLDGFSTSDNENNNDMTYELPENLKESILDISNHLSNSLAMLQNISG 183 (530)
T ss_pred HHHHHHHHhcchhhHhhhhhccCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999998654 12367889999999999999999999998764
No 21
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=99.89 E-value=3.2e-22 Score=180.50 Aligned_cols=126 Identities=28% Similarity=0.380 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch--hhhhhhHHHH
Q 042707 69 PKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSN--FALQMNNVQT 146 (203)
Q Consensus 69 ~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y~~a~d~L~~A~~~L~~~~~~~--~~~~~~d~~t 146 (203)
+..+++++++++++++..+...+.++.. ...+++.+.|++||+|++++++|+|++++.+|+..+... .....+|++|
T Consensus 37 ~~~~~~~~L~~tl~~a~~a~~~vs~l~~-~~~~~r~~~Al~DC~ELl~davD~L~~Sl~eL~~~~~~~~~~~~~~~DvqT 115 (520)
T PLN02201 37 PPSEFVSSLKTTVDVIRKVVSIVSQFDK-VFGDSRLSNAISDCLDLLDFAAEELSWSISASQNPNGKDNSTGDVGSDLRT 115 (520)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHH
Confidence 4578899999999999999999988864 335788899999999999999999999999997432110 1235799999
Q ss_pred HHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 042707 147 WVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYA 197 (203)
Q Consensus 147 wLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~l~ 197 (203)
||||||||++||+|||++.+ +.++..+...+.++.+|+||+|||++...
T Consensus 116 WLSAALTnq~TClDGF~~~~--~~~k~~v~~~l~nvt~LtSNaLALv~~~~ 164 (520)
T PLN02201 116 WLSAALSNQDTCIEGFDGTN--GIVKKLVAGSLSQVGSTVRELLTMVHPPP 164 (520)
T ss_pred HHHhhhcchhhhhhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999998753 46788888999999999999999998754
No 22
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=99.88 E-value=8.2e-22 Score=176.17 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=126.9
Q ss_pred HcccCCCCChhhHHHhhcccc----cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHH----HH
Q 042707 42 KTSCRVTTYPDLCITTLSGYA----TKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDC----VD 113 (203)
Q Consensus 42 ~~~C~~T~~p~~C~~tL~~~p----~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC----~e 113 (203)
-.+|+.++||+.|...+.... .....++..++.++++.++.++..+...+..+...-..+++++.|++|| +|
T Consensus 2 ~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~a~~dc~~~c~e 81 (509)
T PLN02488 2 IGVCKGYDDKQSCQNLLLELKTVSSSLSEMRCRDLLIIVLKNSVWRIDMAMIGVMEDTKLLEEMENDMLGVKEDTNLFEE 81 (509)
T ss_pred ceecCCCCChHHHHHHHHhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHhHHHHHH
Confidence 358999999999999987766 3334568899999999999999999999888765432278899999999 99
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 042707 114 QLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALV 193 (203)
Q Consensus 114 ~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii 193 (203)
+|++++++|.+++..+....... ....+|+++|||||||||+||+|||.+ +.++..|...+.++.+|++|+|||+
T Consensus 82 l~~~~~~~l~~s~~~~~~~~~~~-~~~~~d~~twLSa~lt~q~TC~dg~~~----~~~~~~~~~~l~~~~~~~sn~La~~ 156 (509)
T PLN02488 82 MMESAKDRMIRSVEELLGGESPN-LGSYENVHTWLSGVLTSYITCIDEIGE----GAYKRRVEPELEDLISRARVALAIF 156 (509)
T ss_pred HHHHHHHHHHHHHHHhhcccccc-cCcHHHHHHHHHHhHhchhhHhccccC----cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999996321111 124589999999999999999999953 2678889999999999999999999
Q ss_pred Hhhhc
Q 042707 194 NSYAS 198 (203)
Q Consensus 194 ~~l~~ 198 (203)
..+..
T Consensus 157 ~~~~~ 161 (509)
T PLN02488 157 ISISP 161 (509)
T ss_pred ccccc
Confidence 87663
No 23
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=99.82 E-value=1.8e-19 Score=162.38 Aligned_cols=130 Identities=25% Similarity=0.282 Sum_probs=100.2
Q ss_pred CChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042707 49 TYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDAVDELQNSISE 128 (203)
Q Consensus 49 ~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y~~a~d~L~~A~~~ 128 (203)
+||..|..+|++... .-|..+...++++.+..... .+ .....+|++||+|+|++++++|+++++.
T Consensus 58 ~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~Al~DC~ELlddavd~L~~S~~~ 122 (529)
T PLN02170 58 PSSSSKQGFLSSVQE---SMNHALFARSLAFNLTLSHR---TV---------QTHTFDPVNDCLELLDDTLDMLSRIVVI 122 (529)
T ss_pred CCcchhhhhhhhhhc---cChHHHHHhhhHhhhhhhhh---hc---------ccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999997643 23566777777765552111 11 1122579999999999999999999965
Q ss_pred hcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 042707 129 MGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYASI 199 (203)
Q Consensus 129 L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~l~~~ 199 (203)
... .+..+|++|||||||||++||.|||++.+....++..+...+.++.+|+||+|||++.+...
T Consensus 123 ~~~------~~~~~DvqTWLSAALTnq~TClDGf~~~~~~~~~~~~~~~~l~nv~eLtSNALALv~~~~~~ 187 (529)
T PLN02170 123 KHA------DHDEEDVHTWLSAALTNQETCEQSLQEKSSSYKHGLAMDFVARNLTGLLTNSLDLFVSVKSK 187 (529)
T ss_pred hcc------ccchhHHHHHHHHHHhchhhHhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 432 23689999999999999999999998765444566778888899999999999999887653
No 24
>PLN02916 pectinesterase family protein
Probab=99.67 E-value=4.5e-16 Score=139.95 Aligned_cols=87 Identities=25% Similarity=0.412 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHH
Q 042707 99 GLNPREAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQ 178 (203)
Q Consensus 99 ~~~~~~~~al~dC~e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~ 178 (203)
+.+-....|++||.|+|++++++|.+++..+... ..+|++|||||||||++||.|||++.. ... ...
T Consensus 56 ~~~~~~~~Al~DC~ELl~dSvd~L~~Sl~~~~~~-------~~~DvqTWLSAALTnq~TClDGf~~~~---~~~---~~~ 122 (502)
T PLN02916 56 GSYYNLGEALSDCEKLYDESEARLSKLLVSHENF-------TVEDARTWLSGVLANHHTCLDGLEQKG---QGH---KPM 122 (502)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHHHHHHhhccC-------chHHHHHHHHHHHhCHhHHHHhhhhcc---ccc---hHH
Confidence 3445677899999999999999999999877532 469999999999999999999998643 122 234
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 042707 179 ISNVAHLTSNGLALVNSYAS 198 (203)
Q Consensus 179 ~~~~~~L~snaLaii~~l~~ 198 (203)
+.++.+|+||+|||++.+..
T Consensus 123 v~nvt~ltSNaLAlv~~~~~ 142 (502)
T PLN02916 123 AHNVTFVLSEALALYKKSRG 142 (502)
T ss_pred HHHHHHHHHHHHHHhhhhhh
Confidence 67999999999999988764
No 25
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=65.66 E-value=30 Score=21.47 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042707 81 LKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRDAVDELQ 123 (203)
Q Consensus 81 ~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y~~a~d~L~ 123 (203)
+..+..+.+....+.. ...|+..+..+..|.+.++..+++|+
T Consensus 6 lAslK~~qA~Le~fal-~T~d~~AK~~y~~~a~~l~~ii~~L~ 47 (50)
T PF07870_consen 6 LASLKKAQADLETFAL-QTQDQEAKQMYEQAAQQLEEIIQDLE 47 (50)
T ss_pred HHHHHHHHhhHHHHHh-hcCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444433 23588899999999999999998876
No 26
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.67 E-value=91 Score=22.04 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHh-----hhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042707 78 SVALKTALVTSTTMNKL-----SKSQG--LNPREAAALYDCVDQLRDAVDELQNSIS 127 (203)
Q Consensus 78 ~~a~~~a~~a~~~i~~l-----~~~~~--~~~~~~~al~dC~e~y~~a~d~L~~A~~ 127 (203)
+.|..+|++....+..- ....| .+...+.++.-|.+-|.++-.-+.++.-
T Consensus 29 qlAvAnAqeLv~kisekCf~KCit~PGssl~~~e~~Cis~CmdRyMdawniVSrty~ 85 (97)
T KOG1733|consen 29 QLAVANAQELVSKISEKCFDKCITKPGSSLDSSEKSCISRCMDRYMDAWNIVSRTYI 85 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655554421 11122 4778899999999999999888777654
No 27
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=41.56 E-value=83 Score=20.18 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042707 100 LNPREAAALYDCVDQLRDAVDELQNSIS 127 (203)
Q Consensus 100 ~~~~~~~al~dC~e~y~~a~d~L~~A~~ 127 (203)
.+..+..+++.|.+-|-++-..+.+...
T Consensus 37 L~~~E~~Ci~~C~~ky~~~~~~v~~~~~ 64 (66)
T PF02953_consen 37 LSSKEESCIDNCVDKYIDTNQFVSKRFQ 64 (66)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999888877654
No 28
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.61 E-value=22 Score=24.83 Aligned_cols=26 Identities=12% Similarity=0.431 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 042707 107 ALYDCVDQLRDAVDELQNSISEMGRN 132 (203)
Q Consensus 107 al~dC~e~y~~a~d~L~~A~~~L~~~ 132 (203)
-.+||.|.+-+-+.++++|.++|+..
T Consensus 66 TfnDc~eA~veL~~~IkEAr~~L~rk 91 (95)
T KOG4841|consen 66 TFNDCEEAAVELQSQIKEARADLARK 91 (95)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 46899999999999999999999864
No 29
>PLN03207 stomagen; Provisional
Probab=39.45 E-value=35 Score=24.47 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhhccCCCCCC
Q 042707 14 IFIQFATYMNTYCSAARPVQ 33 (203)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ 33 (203)
|+|+++.+|+ +.+|+.+
T Consensus 20 ~~llla~~v~---qgsr~~~ 36 (113)
T PLN03207 20 FFLLLGAYVI---QGSRNQS 36 (113)
T ss_pred HHHHHHHHHH---hcccccc
Confidence 4444555555 4555554
No 30
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=36.24 E-value=25 Score=24.20 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=11.0
Q ss_pred hhhhccCCCCCCCcchh
Q 042707 22 MNTYCSAARPVQSETNT 38 (203)
Q Consensus 22 ~~~~~~~~~~~~~~~~~ 38 (203)
+++.++++||.+.....
T Consensus 8 ~~~~~~AARp~p~~~~~ 24 (81)
T PF06404_consen 8 SSTSAAAARPLPASQGA 24 (81)
T ss_pred HhhHhhhcCCCCCcccc
Confidence 33367888888775443
No 31
>PLN02749 Uncharacterized protein At1g47420
Probab=35.61 E-value=2.1e+02 Score=22.24 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCC
Q 042707 106 AALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRK 165 (203)
Q Consensus 106 ~al~dC~e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~ 165 (203)
.|-+.|.|++. .+..|.-++..+-...+.+.+.--+....-|-++-.-..+-+|.|...
T Consensus 65 rAAeAveeFgG-~L~sLrmeidDl~GlsGEnv~PLPd~~~~Al~tay~rY~~YLdsFgp~ 123 (173)
T PLN02749 65 RAAEAVEEFGG-TLVSLRMEIDDLIGLSGENVKPLPDYIENALETAYQRYAAYLDSFGPE 123 (173)
T ss_pred HHHHHHHHHhh-HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCch
Confidence 45677888777 788999999888766544333223445555666777778889999863
No 32
>PF14290 DUF4370: Domain of unknown function (DUF4370)
Probab=32.46 E-value=2.1e+02 Score=23.39 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCC
Q 042707 106 AALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRK 165 (203)
Q Consensus 106 ~al~dC~e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~ 165 (203)
.|-+.|.|++.. +..|+-++..+-+..+.+.+.--+....-|-++-.-..+-+|.|...
T Consensus 131 RAAeAvEeFgG~-L~tLrm~idDl~GlsGEnv~PLP~~~~~Al~t~y~rY~~YL~sFgp~ 189 (239)
T PF14290_consen 131 RAAEAVEEFGGI-LVTLRMEIDDLCGLSGENVKPLPDYIENALRTAYKRYMTYLDSFGPD 189 (239)
T ss_pred HHHHHHHHhhhh-HHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCch
Confidence 456778887776 88899888888766554333333455555666777788899999863
No 33
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=30.25 E-value=35 Score=24.03 Aligned_cols=26 Identities=12% Similarity=0.475 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 042707 107 ALYDCVDQLRDAVDELQNSISEMGRN 132 (203)
Q Consensus 107 al~dC~e~y~~a~d~L~~A~~~L~~~ 132 (203)
.++||.|-|.+=..++++|.+.|+..
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 46899999999999999999998864
No 34
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=27.30 E-value=1.6e+02 Score=23.96 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHhhcchhhHHhhhc
Q 042707 140 QMNNVQTWVSAALTNEDTCMDGFS 163 (203)
Q Consensus 140 ~~~d~~twLSAAlt~~~TC~Dgf~ 163 (203)
++..+++.|..+++-.++=.+|..
T Consensus 72 ~~~~~r~~l~~~~~~~~~~~ng~s 95 (207)
T PRK09634 72 DLESARTMLQEALTLAETAINRLS 95 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHcccc
Confidence 344555555555555555555443
No 35
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=25.21 E-value=6.7e+02 Score=24.74 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=55.8
Q ss_pred cCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhhhh-cCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccccchhhh
Q 042707 65 IQASPKLLASTALSVALKT-ALVTSTTMNKLSKS-QGLNPREAA---ALYDCVDQLRDAVDELQNSISEMGRNERSNFAL 139 (203)
Q Consensus 65 ~~~d~~~l~~~ai~~a~~~-a~~a~~~i~~l~~~-~~~~~~~~~---al~dC~e~y~~a~d~L~~A~~~L~~~~~~~~~~ 139 (203)
...||..+...++..++.+ ...|..++...++. ++.++..+. -+=.|.+.|.+|++-+..+++....+ .
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N------~ 547 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN------H 547 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh------h
Confidence 3578888999999888765 56677888887765 444555443 45567778888888888888876542 1
Q ss_pred hhhHHHHHHHHhhcc
Q 042707 140 QMNNVQTWVSAALTN 154 (203)
Q Consensus 140 ~~~d~~twLSAAlt~ 154 (203)
...+.+..++-.+.+
T Consensus 548 ~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 548 VLMDGKIHIELTFND 562 (799)
T ss_pred hhchhhhhhhhhccc
Confidence 234445555544443
No 36
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.93 E-value=3.9e+02 Score=21.53 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042707 66 QASPKLLASTALSVALKTALVTSTTMNKLSKSQG-LNPREAAALYDCVDQLRDAVDELQNSISE 128 (203)
Q Consensus 66 ~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~-~~~~~~~al~dC~e~y~~a~d~L~~A~~~ 128 (203)
..||.-|..+-. .++...+.+..++...+ .-+....---+|.+.|.++++.|.+++.+
T Consensus 121 ~vDp~VL~DlE~-----~~~el~~~vD~llr~lgg~lh~is~lt~~~vq~yr~aV~kl~d~~Da 179 (222)
T KOG4514|consen 121 EVDPSVLSDLEL-----EAQELASSVDNLLRNLGGLLHSISSLTADNVQVYRNAVNKLTDTLDA 179 (222)
T ss_pred CCChHHHHHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Confidence 457766554333 34444555555554322 22334455679999999999999988765
No 37
>PF10360 DUF2433: Protein of unknown function (DUF2433); InterPro: IPR018829 This entry represents a conserved domain of 120 residues from a family fungal proteins. Their function is not known.
Probab=22.81 E-value=92 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhccCC
Q 042707 181 NVAHLTSNGLALVNSYASITS 201 (203)
Q Consensus 181 ~~~~L~snaLaii~~l~~~~~ 201 (203)
.-++|..+||.|+.+++....
T Consensus 48 ~q~~LL~~AL~v~~kiP~~~~ 68 (132)
T PF10360_consen 48 AQRNLLENALSVFDKIPISAN 68 (132)
T ss_pred HHHHHHHHHHHHHHhCCCCCC
Confidence 368999999999999987643
No 38
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.68 E-value=79 Score=16.59 Aligned_cols=13 Identities=23% Similarity=0.278 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhh
Q 042707 11 TLLIFIQFATYMN 23 (203)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (203)
|.++.++|+-+++
T Consensus 6 FalivVLFILLiI 18 (24)
T PF09680_consen 6 FALIVVLFILLII 18 (24)
T ss_pred chhHHHHHHHHHH
Confidence 4456666666666
No 39
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.05 E-value=92 Score=16.67 Aligned_cols=13 Identities=23% Similarity=0.255 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhh
Q 042707 11 TLLIFIQFATYMN 23 (203)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (203)
+.+++++||-+|+
T Consensus 8 f~livVLFILLII 20 (26)
T TIGR01732 8 FALIVVLFILLVI 20 (26)
T ss_pred hHHHHHHHHHHHH
Confidence 3456666666666
No 40
>PF06589 CRA: Circumsporozoite-related antigen (CRA); InterPro: IPR009512 The mode of choroquine action or resistance of the malarial parasite Plasmodium falciparum is not fully elucidated and presents a huge challenge world wide. Plasmodial EXP-1 protein, also called circumsporozoite-related antigen, changes under chloroquine treatment, making it a potential chloroquine resistance marker []. Although there are no authentic repeats in this antigen, there are a number of internal homologies (N-A-N-P) and (N-A-D-P). The first of these tetramers is the dominant repeat found in the circumsporozoite protein (CSP) of P. falciparum and reacts with antibodies against circumsporozoite-related antigen (CRA). It is possible that immune responses to CRA may act against the CSP also. The CRA is found in many parasitic strains.
Probab=21.65 E-value=76 Score=24.06 Aligned_cols=15 Identities=7% Similarity=0.157 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhh
Q 042707 9 ALTLLIFIQFATYMN 23 (203)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (203)
+++.+|+||+++++.
T Consensus 3 l~s~~FllF~~il~~ 17 (157)
T PF06589_consen 3 LLSAFFLLFCLILCD 17 (157)
T ss_pred HHHHHHHHHHHHHhh
Confidence 455666666655544
No 41
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=21.58 E-value=2.5e+02 Score=21.63 Aligned_cols=25 Identities=40% Similarity=0.650 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 042707 108 LYDCVDQLRDAVDELQNSISEMGRN 132 (203)
Q Consensus 108 l~dC~e~y~~a~d~L~~A~~~L~~~ 132 (203)
|++|..-+..++..|+.++..|+.+
T Consensus 2 L~~cV~SL~~S~~lL~~Si~~L~~~ 26 (153)
T PF08287_consen 2 LSNCVSSLRSSVQLLQSSIETLDSG 26 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666666666544
No 42
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=20.80 E-value=97 Score=20.18 Aligned_cols=21 Identities=10% Similarity=0.100 Sum_probs=13.8
Q ss_pred CCCCchhHHHHHHHHHHHHHhh
Q 042707 2 KGSPFSHALTLLIFIQFATYMN 23 (203)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (203)
+|-| |-+.|..++++++.++.
T Consensus 34 L~Ep-FfLiPlg~l~~~~g~~~ 54 (63)
T PF13127_consen 34 LHEP-FFLIPLGYLFLLIGIIS 54 (63)
T ss_pred Eecc-cHHHHHHHHHHHHHHHH
Confidence 5789 66778776555555543
No 43
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=20.74 E-value=4.7e+02 Score=21.32 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcC
Q 042707 104 EAAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSR 164 (203)
Q Consensus 104 ~~~al~dC~e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~ 164 (203)
...-++.=.+-|+.+.+.....+..+...+ ..++.++...+-|-+.|+..|.+-+.+
T Consensus 147 ~eeElr~Ae~kfees~E~a~~~M~~i~~~e----~e~~~~L~~lv~AQl~Yh~q~~e~L~~ 203 (215)
T cd07593 147 LEEELRRAKAKYEESSEDVEARMVAIKESE----ADQYRDLTDLLDAELDYHQQSLDVLRE 203 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555554432 225667777777888888888776654
No 44
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.11 E-value=4.8e+02 Score=21.19 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=39.6
Q ss_pred cccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 042707 43 TSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGL 100 (203)
Q Consensus 43 ~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~ 100 (203)
.-|. +.||..|.+ ++-+.+..-.|..+=++-+.+-+.++...+....+.+..-.+.
T Consensus 5 ~gCq-saYY~amEk-vG~hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~gg 60 (201)
T PF11172_consen 5 TGCQ-SAYYSAMEK-VGVHKRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGG 60 (201)
T ss_pred HHhH-HHHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 3466 568888877 5655554445666778888888888888888888777664443
No 45
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=20.02 E-value=1.6e+02 Score=17.18 Aligned_cols=12 Identities=0% Similarity=-0.167 Sum_probs=4.7
Q ss_pred CCCCchhHHHHH
Q 042707 2 KGSPFSHALTLL 13 (203)
Q Consensus 2 ~~~~~~~~~~~~ 13 (203)
.|-.++..-.|+
T Consensus 2 ~~ltl~dfylc~ 13 (43)
T PF11395_consen 2 NHLTLFDFYLCF 13 (43)
T ss_pred CceehhHHHHHH
Confidence 333444433333
Done!