Query         042707
Match_columns 203
No_of_seqs    144 out of 904
Neff          7.8 
Searched_HMMs 29240
Date          Mon Mar 25 15:08:50 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042707hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1xg2_B Pectinesterase inhibito 100.0 7.5E-35 2.6E-39  224.0  16.7  149   38-197     3-151 (153)
  2 1x91_A Invertase/pectin methyl 100.0 9.5E-35 3.2E-39  223.7  15.5  150   36-198     3-152 (153)
  3 2cj4_A Invertase inhibitor; pr 100.0 1.1E-33 3.7E-38  217.2  15.1  147   36-196     2-149 (150)
  4 3cjh_B Mitochondrial import in  32.5      89   0.003   19.2   4.9   29  100-128    34-62  (64)
  5 3dxr_B Mitochondrial import in  27.8 1.1E+02  0.0039   20.6   4.9   32  100-131    56-87  (95)
  6 2l7n_A Talin-1; integrin, bund  27.2   2E+02  0.0067   21.6   9.9   87   72-159    77-164 (168)
  7 2bsk_B Mitochondrial import in  25.5 1.5E+02  0.0051   19.6   5.2   32  100-131    43-74  (90)
  8 3dxr_A Mitochondrial import in  25.2 1.5E+02  0.0051   19.6   5.1   32  100-131    50-81  (89)
  9 2bsk_A Mitochondrial import in  25.1 1.5E+02  0.0052   19.5   5.2   32  100-131    41-72  (89)
 10 1vh6_A Flagellar protein FLIS;  23.1 1.1E+02  0.0036   22.3   4.3   44   66-115    19-63  (145)
 11 3w03_C DNA repair protein XRCC  21.3 2.7E+02  0.0093   21.1   6.7   49   65-116   135-183 (184)

No 1  
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00  E-value=7.5e-35  Score=223.96  Aligned_cols=149  Identities=21%  Similarity=0.353  Sum_probs=138.0

Q ss_pred             hHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHH
Q 042707           38 TQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLRD  117 (203)
Q Consensus        38 ~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y~~  117 (203)
                      .+.|+.+|++|+||++|+++|.++|++...|+++|+++++++++.++..+..++.++.+. ..+|..+.+|+||.|+|++
T Consensus         3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~-~~~~~~~~al~dC~e~y~~   81 (153)
T 1xg2_B            3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ-ATDPKLKGRYETCSENYAD   81 (153)
T ss_dssp             CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999988788999999999999999999999999998764 3589999999999999999


Q ss_pred             HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 042707          118 AVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNSYA  197 (203)
Q Consensus       118 a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~l~  197 (203)
                      ++++|++++..|..+       +++|+++|||+|+++++||+|||++.+   .++++|...+.++.+|++|+|+|++.+.
T Consensus        82 a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~~~~~~~~~l~s~aLai~~~l~  151 (153)
T 1xg2_B           82 AIDSLGQAKQFLTSG-------DYNSLNIYASAAFDGAGTCEDSFEGPP---NIPTQLHQADLKLEDLCDIVLVISNLLP  151 (153)
T ss_dssp             HHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHHHHCCSSS---CCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhC-------CHHHHHHHHHHHhcccchHHHHhccCC---CCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999865       689999999999999999999998753   4678999999999999999999999875


No 2  
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00  E-value=9.5e-35  Score=223.70  Aligned_cols=150  Identities=24%  Similarity=0.376  Sum_probs=136.0

Q ss_pred             chhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 042707           36 TNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQL  115 (203)
Q Consensus        36 ~~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y  115 (203)
                      ++.+.|+.+|++|+||++|+++|  +|.+...|+++|+++++++++.++..+..++.++.+.. .++..+.+|+||.|+|
T Consensus         3 a~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~y   79 (153)
T 1x91_A            3 MDSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDGG-VDPRSKLAYRSCVDEY   79 (153)
T ss_dssp             --CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence            45678999999999999999999  67666789999999999999999999999999987653 5899999999999999


Q ss_pred             HHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 042707          116 RDAVDELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVNS  195 (203)
Q Consensus       116 ~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~~  195 (203)
                      ++++++|++++..|..+       +++|+++|||+|+++++||+|||++.+   +++++|..++.++.+|++|+|+|++.
T Consensus        80 ~~a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~~~~~~~~~l~s~aLai~~~  149 (153)
T 1x91_A           80 ESAIGNLEEAFEHLASG-------DGMGMNMKVSAALDGADTCLDDVKRLR---SVDSSVVNNSKTIKNLCGIALVISNM  149 (153)
T ss_dssp             HHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHHHHHTTCS---SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHccHhHHHHHhccCC---CCcCHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999999999865       589999999999999999999998753   47899999999999999999999998


Q ss_pred             hhc
Q 042707          196 YAS  198 (203)
Q Consensus       196 l~~  198 (203)
                      +..
T Consensus       150 l~~  152 (153)
T 1x91_A          150 LPR  152 (153)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            754


No 3  
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00  E-value=1.1e-33  Score=217.23  Aligned_cols=147  Identities=18%  Similarity=0.236  Sum_probs=133.3

Q ss_pred             chhHHHHcccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 042707           36 TNTQFIKTSCRVTTYPDLCITTLSGYATKIQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQL  115 (203)
Q Consensus        36 ~~~~~I~~~C~~T~~p~~C~~tL~~~p~s~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y  115 (203)
                      ++.++|+.+|++|+||++|+++|.++|++..+|+++|+++++++++.++..+..++..+.+. ..++..+.+|+||.|+|
T Consensus         2 a~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~-~~~~~~~~al~dC~e~y   80 (150)
T 2cj4_A            2 AMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS-NPPAAWKGPLKNCAFSY   80 (150)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCCGGGHHHHHHHHHHH
T ss_pred             CchHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHH
Confidence            35689999999999999999999999988778999999999999999999999999998754 45788999999999999


Q ss_pred             HHHH-HHHHHHHHHhcccccchhhhhhhHHHHHHHHhhcchhhHHhhhcCCCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 042707          116 RDAV-DELQNSISEMGRNERSNFALQMNNVQTWVSAALTNEDTCMDGFSRKSMNGNVKATVRRQISNVAHLTSNGLALVN  194 (203)
Q Consensus       116 ~~a~-d~L~~A~~~L~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~l~~~~~~~~~L~snaLaii~  194 (203)
                      ++++ ++|++|+..+..+       +++++++|||+|+++++||+|||++.      ++||..++.++.+|++|+|+|++
T Consensus        81 ~~a~~~~L~~a~~~l~~~-------~~~~~~t~lsaAlt~~~tC~dgf~~~------~~pl~~~~~~~~~l~s~aLaii~  147 (150)
T 2cj4_A           81 KVILTASLPEAIEALTKG-------DPKFAEDGMVGSSGDAQECEEYFKGS------KSPFSALNIAVHELSDVGRAIVR  147 (150)
T ss_dssp             HHHHHTHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHHHTTTTS------CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHHHhhCCC------CCccHHHHHHHHHHHHHHHHHHH
Confidence            9999 7999999999865       68999999999999999999999842      45789999999999999999998


Q ss_pred             hh
Q 042707          195 SY  196 (203)
Q Consensus       195 ~l  196 (203)
                      .+
T Consensus       148 ~l  149 (150)
T 2cj4_A          148 NL  149 (150)
T ss_dssp             TT
T ss_pred             hh
Confidence            75


No 4  
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=32.46  E-value=89  Score=19.21  Aligned_cols=29  Identities=24%  Similarity=0.489  Sum_probs=24.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042707          100 LNPREAAALYDCVDQLRDAVDELQNSISE  128 (203)
Q Consensus       100 ~~~~~~~al~dC~e~y~~a~d~L~~A~~~  128 (203)
                      .+..+..++..|.+-|-++-..+.+.+..
T Consensus        34 L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~   62 (64)
T 3cjh_B           34 LSSQEEQCLSNCVNRFLDTNIRIVNGLQN   62 (64)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57788899999999999998888776654


No 5  
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=27.75  E-value=1.1e+02  Score=20.57  Aligned_cols=32  Identities=25%  Similarity=0.484  Sum_probs=26.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 042707          100 LNPREAAALYDCVDQLRDAVDELQNSISEMGR  131 (203)
Q Consensus       100 ~~~~~~~al~dC~e~y~~a~d~L~~A~~~L~~  131 (203)
                      .+..+..++..|.+-|-++-..+.+.+..+..
T Consensus        56 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q   87 (95)
T 3dxr_B           56 LNKNESSCLDRCVAKYFETNVQVGENMQKMGQ   87 (95)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788899999999999999998888877653


No 6  
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=27.21  E-value=2e+02  Score=21.56  Aligned_cols=87  Identities=16%  Similarity=0.140  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHH
Q 042707           72 LASTALSVALKTALVTSTTMNKLSKSQGLNPRE-AAALYDCVDQLRDAVDELQNSISEMGRNERSNFALQMNNVQTWVSA  150 (203)
Q Consensus        72 l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~-~~al~dC~e~y~~a~d~L~~A~~~L~~~~~~~~~~~~~d~~twLSA  150 (203)
                      +.-++-+.+...+......+..+... ..+|.. +.-|+.+.+.++++..-++++-..+.......-......+-.-+|.
T Consensus        77 y~g~aar~~A~aL~~lt~avrgvaat-t~d~~~q~~ll~~a~~V~~~s~~Li~ear~~~~~p~d~~~~~~L~~~ak~vs~  155 (168)
T 2l7n_A           77 YAGIAARDVAGGLRSLAQAARGVAAL-TSDPAVQAIVLDTASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVTQ  155 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTBSSSCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence            33333333333334433344444432 345544 4456666678888887788887777542211112233445555666


Q ss_pred             hhcchhhHH
Q 042707          151 ALTNEDTCM  159 (203)
Q Consensus       151 Alt~~~TC~  159 (203)
                      ++...-.|+
T Consensus       156 aL~~~v~cL  164 (168)
T 2l7n_A          156 ALNRCVSCL  164 (168)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhcC
Confidence            765444453


No 7  
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=25.50  E-value=1.5e+02  Score=19.57  Aligned_cols=32  Identities=22%  Similarity=0.431  Sum_probs=27.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 042707          100 LNPREAAALYDCVDQLRDAVDELQNSISEMGR  131 (203)
Q Consensus       100 ~~~~~~~al~dC~e~y~~a~d~L~~A~~~L~~  131 (203)
                      .+..+..++..|.+-|-++-..+.+.+..+..
T Consensus        43 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~   74 (90)
T 2bsk_B           43 LSKGESVCLDRCVSKYLDIHERMGKKLTELSM   74 (90)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788899999999999999988888776653


No 8  
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=25.18  E-value=1.5e+02  Score=19.56  Aligned_cols=32  Identities=13%  Similarity=0.367  Sum_probs=27.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 042707          100 LNPREAAALYDCVDQLRDAVDELQNSISEMGR  131 (203)
Q Consensus       100 ~~~~~~~al~dC~e~y~~a~d~L~~A~~~L~~  131 (203)
                      .+..+..++..|.+-|-++-..+...+..+..
T Consensus        50 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~   81 (89)
T 3dxr_A           50 LTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA   81 (89)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788899999999999999999888877654


No 9  
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=25.08  E-value=1.5e+02  Score=19.54  Aligned_cols=32  Identities=13%  Similarity=0.288  Sum_probs=27.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 042707          100 LNPREAAALYDCVDQLRDAVDELQNSISEMGR  131 (203)
Q Consensus       100 ~~~~~~~al~dC~e~y~~a~d~L~~A~~~L~~  131 (203)
                      .+..+..++..|.+-|-++-..+.+.+..+..
T Consensus        41 L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~   72 (89)
T 2bsk_A           41 VKPEETTCSEHCLQKYLKMTQRISMRFQEYHI   72 (89)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788899999999999999999888877654


No 10 
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=23.06  E-value=1.1e+02  Score=22.33  Aligned_cols=44  Identities=14%  Similarity=0.142  Sum_probs=28.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHH-HHHHHHHHHH
Q 042707           66 QASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREA-AALYDCVDQL  115 (203)
Q Consensus        66 ~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~-~al~dC~e~y  115 (203)
                      +++|.+|+.+..+-+++....+...+..      .+-..+ ..+.-|.+..
T Consensus        19 tAsP~~Li~mLydgal~~l~~A~~aie~------~d~~~k~~~i~KA~~Ii   63 (145)
T 1vh6_A           19 TATPGELTLMLYNGCLKFIRLAAQAIEN------DDMERKNENLIKAQNII   63 (145)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHH
Confidence            5688899999998888888887765521      243333 3555555554


No 11 
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=21.34  E-value=2.7e+02  Score=21.12  Aligned_cols=49  Identities=16%  Similarity=0.159  Sum_probs=38.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 042707           65 IQASPKLLASTALSVALKTALVTSTTMNKLSKSQGLNPREAAALYDCVDQLR  116 (203)
Q Consensus        65 ~~~d~~~l~~~ai~~a~~~a~~a~~~i~~l~~~~~~~~~~~~al~dC~e~y~  116 (203)
                      ...||.+..+-.+.-+++........+.++.+.   +.+.+.-.++|.+.++
T Consensus       135 ~v~~p~e~i~elid~~ld~~~~L~~~n~~Lqke---NeRL~~E~n~~l~qlE  183 (184)
T 3w03_C          135 KVENPAEVIRELICYCLDTIAENQAKNEHLQKE---NERLLRDWNDVQGRFE  183 (184)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             ECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence            357899999999999999999988888887663   4667777778877654


Done!