BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042709
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/475 (25%), Positives = 193/475 (40%), Gaps = 95/475 (20%)
Query: 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQI 69
R+PHV++IP+P GH+ PL KLA + G +TFVNTE+ H +++ S KA + +
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 66
Query: 70 MLVSIPDGL---DLQADERED--------------PH-KLMTE-DPQADTECTACVIADI 110
SIPDGL + D +D P+ +L+T + + C+++D
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDC 126
Query: 111 SVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNGFAVLNYGLISLSNE 170
+ + ++ AE + + SL +H ++ II + L G + +
Sbjct: 127 CMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVD 186
Query: 171 -IPALN--RNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACD--- 224
IP L R + F N I +L N+ EL+S +
Sbjct: 187 WIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALS 246
Query: 225 -LIPSVLPF--------------------------DSTCLSWRDKQAIGSVTYVAFGRFS 257
IPS+ P D+ CL W + + GSV YV FG +
Sbjct: 247 STIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTT 306
Query: 258 IXX------------------------------------XXXXXXXXXXKIVEWAPQEND 281
+ I W PQ+
Sbjct: 307 VMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKV 366
Query: 282 LGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENG 341
L HPSI FL+HCGWNST E + GVP LCWP FADQ + +IC+ W+IG+++ D N
Sbjct: 367 LNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI--DTN- 423
Query: 342 IITRQEIQINVKALLKND---GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393
+ R+E+ + ++ D +K +++LK+ A + GG S+ + I +
Sbjct: 424 -VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDV 477
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 108/456 (23%), Positives = 181/456 (39%), Gaps = 79/456 (17%)
Query: 8 SCRQPHVLVIPFPALGHVAPLMKLATKIAE---HGIDVTFVNTEFIHAKIIA-SMQGKAE 63
+ PHV V+ FP H APL+ + ++A H + +F +T +A I SM
Sbjct: 4 TTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAV-FSFFSTSQSNASIFHDSMHTMQC 62
Query: 64 NSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQ----------ADT-ECTACVIADISV 112
N S + +P+G +ED P+ A+T +C++AD +
Sbjct: 63 NIKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFI 122
Query: 113 GWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNGFAVLNYGLISLSNEIP 172
+A ++A +G+A F GP SL+ ++I ++ + G + + L N IP
Sbjct: 123 WFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKI-----GVSGIQGREDELLNFIP 177
Query: 173 ALNRNEYT--WSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI---- 226
+++ + N+ +F Q + V NS ELD + +
Sbjct: 178 GMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKL 237
Query: 227 --------------PSVLPFDSTCLSWRDKQAIGSVTYVAFG------------------ 254
P V+P + CL W ++ SV Y++FG
Sbjct: 238 KTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALE 297
Query: 255 --------------RFSIXXXXXXXXXXXXKIVEWAPQENDLGHPSIAWFLSHCGWNSTM 300
R + +V WAPQ L H ++ F++HCGWNS
Sbjct: 298 ASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLW 357
Query: 301 EGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALL---K 357
E ++ GVP +C P F DQ N + DV +IGV++ E G+ T+ + +L K
Sbjct: 358 ESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI---EGGVFTKSGLMSCFDQILSQEK 414
Query: 358 NDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393
++ N L+E A + + GSS F + + +
Sbjct: 415 GKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 275 WAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQ 334
WAPQ L HPS FL+HCGWNST+E + G+P + WP +A+Q N + + + ++
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALR 405
Query: 335 LLPDENGIITRQEIQINVKALLKND---GIKGNSLKLKEIARKILVEGGSSFR 384
++G++ R+E+ VK L++ + G++ +LKE A ++L + G+S +
Sbjct: 406 PRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTK 458
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 45/281 (16%)
Query: 10 RQPHVLVIPFPALGHVAPLMKLATKIAE-HGIDVTFV-NTEFIHAKIIASMQGKAENSSS 67
+ PHV +IP P +GH+ PL++ A ++ HG+ VTFV E +K ++ +S S
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSIS 64
Query: 68 QIMLVSIPDGLDLQADEREDPHKLMT---EDPQADT---------ECTACVIADISVGWA 115
+ L + D DL + R + +T +P+ ++ D+ A
Sbjct: 65 SVFLPPV-DLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDA 123
Query: 116 LEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNGFAVLNYGLISLSNEIPALN 175
+VA + F P L+ LH+PKL + + F L L+ L +P
Sbjct: 124 FDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCE---FRELTEPLM-LPGCVPVAG 179
Query: 176 RNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI-------PS 228
++ + + + K +T + +K ++ +L N+ +EL+ A + P
Sbjct: 180 KDFLDPAQDRKDDAYKWLLHNT----KRYKEAEGILVNTFFELEPNAIKALQEPGLDKPP 235
Query: 229 VLPF---------------DSTCLSWRDKQAIGSVTYVAFG 254
V P +S CL W D Q +GSV YV+FG
Sbjct: 236 VYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFG 276
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 272 IVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKI 331
I WAPQ L H +I F+SHCGWNS +E + GVP L WP +A+Q N + W +
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 332 GVQLLPDE---NGIITRQEIQINVKALLKNDGIKGNSLK-LKEIARKILVEGGSSFRKFD 387
G+ L D + ++ +EI+ +K L+ D I ++ +KE++R +V+GGSS
Sbjct: 396 GLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVG 455
Query: 388 SFISQI 393
I I
Sbjct: 456 KLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 272 IVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKI 331
I WAPQ L H +I F+SHCGWNS +E + GVP L WP +A+Q N + W +
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 332 GVQLLPDE---NGIITRQEIQINVKALLKNDGIKGNSLK-LKEIARKILVEGGSSFRKFD 387
G+ L D + ++ +EI+ +K L+ D I ++ +KE++R +V+GGSS
Sbjct: 396 GLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVG 455
Query: 388 SFISQI 393
I I
Sbjct: 456 KLIDDI 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 43/218 (19%)
Query: 208 KWVLNNSVYELDSPACDLIPSVLPFDSTCLSWRDKQAIGSVTYVAFG------------- 254
K +LN + L +P + + CL W D+ SV Y++FG
Sbjct: 240 KLLLNVGPFNLTTPQRKVSD-----EHGCLEWLDQHENSSVVYISFGSVVTPPPHELTAL 294
Query: 255 -------------------RFSIXXXXXXXXXXXXKIVEWAPQENDLGHPSIAWFLSHCG 295
+ + KIV WAPQ L H S+ FL+H G
Sbjct: 295 AESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSG 354
Query: 296 WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKAL 355
WNS +E + GVP + P F DQ N V +IGV + +NG++T++ I+ ++
Sbjct: 355 WNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV---DNGVLTKESIKKALELT 411
Query: 356 LKNDG---IKGNSLKLKEIARKILVEGGSSFRKFDSFI 390
+ ++ ++ +KLKE A K + + G+S F + I
Sbjct: 412 MSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLI 449
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 271 KIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHN 321
++ +W PQ + LGHP F++H G N E + G+P + P FADQ N
Sbjct: 71 RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 230 LPFDSTCLSWRDKQAIGSVTYVAFGRFSIXXXXXXXXXXXXKIVEWAPQENDLGHPSIAW 289
L F TCLS D + ++ GRF + ++ +W PQ + L S
Sbjct: 270 LDFYRTCLSAVD--GLDWHVVLSVGRF-VDPADLGEVPPNVEVHQWVPQLDILTKASA-- 324
Query: 290 FLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQ 349
F++H G STME LS VP + P A+Q N I ++ +G + D+ +T ++++
Sbjct: 325 FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GLGRHIPRDQ---VTAEKLR 380
Query: 350 INVKALLKNDGI 361
V A+ + G+
Sbjct: 381 EAVLAVASDPGV 392
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 273 VEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIG 332
V W P D+ P+ + H G ST+ GLS GVP L P + + D +
Sbjct: 268 VGWTPL--DVVAPTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVAD-YGAA 324
Query: 333 VQLLPDEN 340
+ LLP E+
Sbjct: 325 IALLPGED 332
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 271 KIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWK 330
++ +W PQ L + F++H G + EGL+ P + P DQ N + + +
Sbjct: 286 EVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGL-G 342
Query: 331 IGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGS 381
+ +L +E T ++ AL+ + + + +L+ I ++ EGG+
Sbjct: 343 VARKLATEE---ATADLLRETALALVDDPEV---ARRLRRIQAEMAQEGGT 387
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88
++ ++ EH I V N +FI+ AKII + + + IML+ + + A R
Sbjct: 45 RIQVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINA--RVST 102
Query: 89 HKLMTEDPQADTEC 102
L T P A TEC
Sbjct: 103 ISLPTAPPAAGTEC 116
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88
++ ++ EH I V N +FI+ AKII + + + IML+ + + A R
Sbjct: 45 RIQVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINA--RVST 102
Query: 89 HKLMTEDPQADTEC 102
L T P A TEC
Sbjct: 103 ISLPTAPPAAGTEC 116
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 30 KLATKIAEHGIDVTFVNTEFIHA-KIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88
++ ++ EH I V N +FI+A KII + + + IML+ + + A R
Sbjct: 45 RIQVRLGEHNIKVLEGNEQFINAVKIIRHPKYNRDTLDNDIMLIKLSSPAVINA--RVST 102
Query: 89 HKLMTEDPQADTEC 102
L T P A TEC
Sbjct: 103 ISLPTAPPAAGTEC 116
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57
RQ H+L GHV P + L +++A G +T+V T ++ A+
Sbjct: 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAA 50
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 24 HVAPLMKLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQA 82
H + ++ ++ EH IDV N +FI+ AKII + IML+ + L
Sbjct: 42 HCSYKSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATL-- 99
Query: 83 DEREDPHKLMTEDPQADTECTACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLH 142
+ R L A TEC+ + GW G +++ + P L SL
Sbjct: 100 NSRVATVSLPRSCAAAGTECS------LISGW--------GNTKSSGSSY-PSLLQCSLK 144
Query: 143 IPKLLDAA 150
P L D++
Sbjct: 145 APVLSDSS 152
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88
++ ++ EH I+V N +FI+ AKII Q + ++ IML+ + + A R
Sbjct: 45 RIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINA--RVST 102
Query: 89 HKLMTEDPQADTEC 102
L T P T+C
Sbjct: 103 ISLPTAPPATGTKC 116
>pdb|1KAP|P Chain P, Three-Dimensional Structure Of The Alkaline Protease Of
Pseudomonas Aeruginosa: A Two-Domain Protein With A
Calcium Binding Parallel Beta Roll Motif
Length = 479
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 325 ICDVWKIGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVE---GGS 381
+ VW G D +G Q+I +N KAL G+KGN IA + VE GGS
Sbjct: 289 VFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDVGGLKGN----VSIAAGVTVENAIGGS 344
>pdb|1JIW|P Chain P, Crystal Structure Of The Apr-Aprin Complex
pdb|1AKL|A Chain A, Alkaline Protease From Pseudomonas Aeruginosa Ifo3080
pdb|3VI1|A Chain A, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
pdb|3VI1|B Chain B, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
Length = 470
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 325 ICDVWKIGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVE---GGS 381
+ VW G D +G Q+I +N KAL G+KGN IA + VE GGS
Sbjct: 280 VFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDVGGLKGN----VSIAAGVTVENAIGGS 335
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88
++ ++ EH IDV N +FI+ AKII + IML+ + L + R
Sbjct: 45 RIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATL--NSRVAT 102
Query: 89 HKLMTEDPQADTEC 102
L A TEC
Sbjct: 103 VSLPRSCAAAGTEC 116
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQA 82
++ ++ EH I+V N +F++ AKII E ++ IML+ + + L A
Sbjct: 45 RIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNA 98
>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
pdb|3MYW|B Chain B, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 223
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88
++ ++ EH IDV N +FI+ AKII + IML+ + L + R
Sbjct: 45 RIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATL--NSRVAT 102
Query: 89 HKLMTEDPQADTEC 102
L A TEC
Sbjct: 103 VSLPRSCAAAGTEC 116
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88
++ ++ EH IDV N +FI+ AKII + IML+ + L + R
Sbjct: 45 RIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATL--NSRVAT 102
Query: 89 HKLMTEDPQADTEC 102
L A TEC
Sbjct: 103 VSLPRSCAAAGTEC 116
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88
++ ++ EH IDV N +FI+ AKII + IML+ + L + R
Sbjct: 45 RIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATL--NSRVAT 102
Query: 89 HKLMTEDPQADTEC 102
L A TEC
Sbjct: 103 VSLPRSCAAAGTEC 116
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant
X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant
X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQA 82
++ ++ EH I+V N +F++ AKII E ++ IML+ + + L A
Sbjct: 45 RIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNA 98
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 271 KIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWP 313
++ W PQ L P + + H G +T+ L GVP L +P
Sbjct: 295 RLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFP 335
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88
++ ++ EH IDV N +FI+ AKII + IML+ + L + R
Sbjct: 45 RIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATL--NSRVAT 102
Query: 89 HKLMTEDPQADTEC 102
L A TEC
Sbjct: 103 VSLPRSCAAAGTEC 116
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88
++ ++ EH IDV N +FI+ AKII + IML+ + L + R
Sbjct: 53 RIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATL--NSRVAT 110
Query: 89 HKLMTEDPQADTEC 102
L A TEC
Sbjct: 111 VSLPRSCAAAGTEC 124
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 30 KLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88
++ ++ EH IDV N +FI+ AKII + IML+ + L + R
Sbjct: 45 RIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLXS--RVAT 102
Query: 89 HKLMTEDPQADTEC 102
L A TEC
Sbjct: 103 VSLPRSCAAAGTEC 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,660,710
Number of Sequences: 62578
Number of extensions: 469819
Number of successful extensions: 904
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 45
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)