Query 042709
Match_columns 398
No_of_seqs 142 out of 1309
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 4.3E-62 9.3E-67 462.9 35.2 369 11-394 6-448 (448)
2 PLN02173 UDP-glucosyl transfer 100.0 1.1E-61 2.5E-66 456.5 33.5 362 11-394 5-447 (449)
3 PLN02207 UDP-glycosyltransfera 100.0 3.5E-61 7.6E-66 454.8 35.0 379 9-397 1-467 (468)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 2E-61 4.2E-66 457.0 33.0 367 10-395 6-450 (451)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.6E-61 5.7E-66 459.2 33.2 378 10-396 8-472 (477)
6 PLN02152 indole-3-acetate beta 100.0 7E-61 1.5E-65 451.8 34.0 364 9-393 1-454 (455)
7 PLN02210 UDP-glucosyl transfer 100.0 6.2E-61 1.3E-65 455.4 33.4 369 11-394 8-454 (456)
8 PLN02555 limonoid glucosyltran 100.0 9.1E-61 2E-65 454.0 34.5 379 11-396 7-470 (480)
9 PLN02448 UDP-glycosyltransfera 100.0 1.2E-60 2.6E-65 456.5 33.3 378 10-397 9-459 (459)
10 PLN00164 glucosyltransferase; 100.0 1.1E-59 2.3E-64 449.8 32.6 378 9-397 1-475 (480)
11 PLN02208 glycosyltransferase f 100.0 1.3E-59 2.7E-64 443.6 31.1 354 11-396 4-440 (442)
12 PLN02992 coniferyl-alcohol glu 100.0 2.2E-59 4.8E-64 443.3 31.3 372 11-396 5-470 (481)
13 PLN02764 glycosyltransferase f 100.0 3.7E-59 8E-64 438.0 31.7 360 11-396 5-446 (453)
14 PLN02554 UDP-glycosyltransfera 100.0 3.7E-59 7.9E-64 447.8 32.2 377 11-396 2-479 (481)
15 PLN03007 UDP-glucosyltransfera 100.0 7.2E-59 1.6E-63 446.4 33.6 375 11-397 5-482 (482)
16 PLN02670 transferase, transfer 100.0 5.8E-59 1.3E-63 440.1 30.8 371 11-397 6-467 (472)
17 PLN03004 UDP-glycosyltransfera 100.0 5.5E-59 1.2E-63 438.5 29.8 367 9-384 1-450 (451)
18 PLN02534 UDP-glycosyltransfera 100.0 3.5E-58 7.5E-63 436.9 32.8 376 8-396 4-487 (491)
19 PLN03015 UDP-glucosyl transfer 100.0 6.9E-58 1.5E-62 430.6 32.5 377 9-394 1-467 (470)
20 PLN02167 UDP-glycosyltransfera 100.0 7.7E-58 1.7E-62 438.0 31.6 378 9-396 1-473 (475)
21 PLN00414 glycosyltransferase f 100.0 1.5E-57 3.1E-62 430.1 30.2 353 11-396 4-441 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 5.8E-45 1.3E-49 350.6 28.5 353 10-395 19-466 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.6E-47 3.4E-52 374.5 8.5 333 13-375 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 7.5E-41 1.6E-45 317.5 28.6 317 17-375 1-376 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.2E-40 4.9E-45 315.6 20.5 315 12-374 1-387 (401)
26 COG1819 Glycosyl transferases, 100.0 1.4E-39 3E-44 305.3 17.8 345 11-393 1-398 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 4.6E-37 1E-41 300.7 17.2 354 11-374 5-438 (496)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 3.2E-22 6.9E-27 184.7 20.5 273 12-355 1-317 (318)
29 PRK12446 undecaprenyldiphospho 99.9 3.2E-22 6.9E-27 185.7 18.1 289 12-367 2-335 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 1.9E-20 4.2E-25 172.6 19.9 84 270-362 231-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.8 3.9E-18 8.5E-23 156.5 21.9 293 12-375 1-338 (357)
32 PRK00726 murG undecaprenyldiph 99.8 6.6E-17 1.4E-21 151.7 21.2 115 270-394 237-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.6 4.1E-14 8.8E-19 132.5 21.2 91 270-366 237-332 (350)
34 TIGR01133 murG undecaprenyldip 99.6 1.8E-13 3.9E-18 128.0 21.0 84 277-366 243-329 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.5 4.5E-14 9.8E-19 133.1 12.7 104 279-389 262-382 (385)
36 TIGR03590 PseG pseudaminic aci 99.5 5.1E-13 1.1E-17 120.2 17.8 252 21-325 13-279 (279)
37 PF03033 Glyco_transf_28: Glyc 99.4 1E-13 2.2E-18 111.6 5.7 111 14-134 1-132 (139)
38 PRK13609 diacylglycerol glucos 99.4 3E-11 6.5E-16 114.4 19.1 87 270-366 258-346 (380)
39 COG4671 Predicted glycosyl tra 99.4 3.3E-11 7.2E-16 106.2 17.4 83 271-359 280-366 (400)
40 PRK00025 lpxB lipid-A-disaccha 99.3 3E-11 6.5E-16 114.4 14.6 107 279-393 256-375 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.3 5.8E-13 1.2E-17 110.8 0.7 85 271-361 58-147 (167)
42 PRK13608 diacylglycerol glucos 99.2 3.5E-09 7.7E-14 100.4 21.1 110 270-393 258-369 (391)
43 cd03814 GT1_like_2 This family 99.2 7E-09 1.5E-13 97.0 23.0 108 270-393 249-363 (364)
44 COG3980 spsG Spore coat polysa 99.1 5E-09 1.1E-13 89.9 15.1 293 12-372 1-307 (318)
45 PLN02871 UDP-sulfoquinovose:DA 99.1 1.2E-07 2.6E-12 92.2 25.4 85 270-366 314-408 (465)
46 cd03800 GT1_Sucrose_synthase T 98.9 2.2E-07 4.8E-12 88.3 21.5 81 270-362 285-372 (398)
47 cd03817 GT1_UGDG_like This fam 98.9 1.6E-07 3.5E-12 87.9 20.1 79 270-361 261-346 (374)
48 cd04962 GT1_like_5 This family 98.9 9E-07 2E-11 83.4 25.1 81 272-364 257-342 (371)
49 cd03794 GT1_wbuB_like This fam 98.9 3.9E-07 8.5E-12 85.7 21.2 86 270-367 277-374 (394)
50 TIGR03492 conserved hypothetic 98.9 2.7E-07 5.8E-12 87.4 19.5 79 278-366 290-372 (396)
51 cd03801 GT1_YqgM_like This fam 98.9 8.3E-07 1.8E-11 82.6 22.7 84 270-365 258-348 (374)
52 cd03823 GT1_ExpE7_like This fa 98.8 4.3E-07 9.4E-12 84.6 19.7 84 270-365 245-336 (359)
53 cd03808 GT1_cap1E_like This fa 98.8 3.5E-06 7.5E-11 78.2 24.1 107 13-130 1-110 (359)
54 cd03818 GT1_ExpC_like This fam 98.8 8.4E-06 1.8E-10 77.7 26.2 83 270-364 283-372 (396)
55 cd03825 GT1_wcfI_like This fam 98.7 7.8E-06 1.7E-10 76.6 25.1 109 271-394 247-363 (365)
56 cd03820 GT1_amsD_like This fam 98.7 4.3E-06 9.3E-11 77.2 22.6 81 279-370 247-331 (348)
57 cd03796 GT1_PIG-A_like This fa 98.7 8.8E-06 1.9E-10 77.6 24.0 103 21-130 13-120 (398)
58 cd03821 GT1_Bme6_like This fam 98.6 1.2E-05 2.6E-10 75.1 22.8 84 270-367 264-354 (375)
59 cd03798 GT1_wlbH_like This fam 98.6 1.4E-05 3E-10 74.6 22.4 80 270-361 261-347 (377)
60 cd03816 GT1_ALG1_like This fam 98.6 2.3E-05 5E-10 75.1 24.1 115 10-132 2-130 (415)
61 TIGR03449 mycothiol_MshA UDP-N 98.6 4E-05 8.6E-10 73.3 24.9 86 270-367 285-377 (405)
62 TIGR00236 wecB UDP-N-acetylglu 98.6 4.6E-06 1E-10 78.6 18.1 96 278-391 268-363 (365)
63 PRK10307 putative glycosyl tra 98.6 8.6E-05 1.9E-09 71.2 27.1 113 270-395 286-407 (412)
64 cd03795 GT1_like_4 This family 98.6 4.1E-05 8.9E-10 71.5 24.2 85 270-363 246-337 (357)
65 PRK05749 3-deoxy-D-manno-octul 98.5 4.3E-05 9.4E-10 73.5 23.9 79 280-368 315-398 (425)
66 PLN02605 monogalactosyldiacylg 98.5 7.7E-07 1.7E-11 84.3 9.8 109 270-392 267-378 (382)
67 cd03805 GT1_ALG2_like This fam 98.4 0.00023 5.1E-09 67.5 25.8 80 270-362 282-368 (392)
68 TIGR02468 sucrsPsyn_pln sucros 98.4 0.00032 7E-09 72.7 27.4 129 6-134 164-344 (1050)
69 PF04007 DUF354: Protein of un 98.4 5E-05 1.1E-09 69.5 19.1 108 12-134 1-114 (335)
70 cd03811 GT1_WabH_like This fam 98.4 3.5E-05 7.5E-10 71.2 18.1 85 271-367 249-341 (353)
71 PRK09922 UDP-D-galactose:(gluc 98.3 5E-05 1.1E-09 71.4 18.5 80 270-360 238-326 (359)
72 cd04951 GT1_WbdM_like This fam 98.3 0.00014 3.1E-09 67.9 20.9 75 279-367 257-336 (360)
73 cd03812 GT1_CapH_like This fam 98.3 0.00018 3.8E-09 67.3 21.5 105 13-130 1-110 (358)
74 TIGR02472 sucr_P_syn_N sucrose 98.3 0.00056 1.2E-08 66.1 24.0 82 271-362 320-410 (439)
75 TIGR02149 glgA_Coryne glycogen 98.2 0.0014 3E-08 62.1 26.3 84 274-364 267-358 (388)
76 cd03822 GT1_ecORF704_like This 98.2 0.00045 9.7E-09 64.5 22.4 77 274-363 254-339 (366)
77 cd03819 GT1_WavL_like This fam 98.2 0.0006 1.3E-08 63.6 22.8 99 22-134 10-112 (355)
78 TIGR02470 sucr_synth sucrose s 98.2 0.00084 1.8E-08 68.1 24.5 65 289-363 646-718 (784)
79 cd03807 GT1_WbnK_like This fam 98.2 0.0011 2.4E-08 61.5 24.1 68 279-360 263-334 (365)
80 cd03802 GT1_AviGT4_like This f 98.2 0.00034 7.5E-09 64.7 20.1 78 270-359 226-309 (335)
81 cd04955 GT1_like_6 This family 98.2 0.00067 1.5E-08 63.5 22.0 105 270-393 250-362 (363)
82 cd05844 GT1_like_7 Glycosyltra 98.2 0.00021 4.5E-09 67.2 18.5 82 270-363 247-341 (367)
83 cd03786 GT1_UDP-GlcNAc_2-Epime 98.1 0.00011 2.3E-09 69.1 16.0 71 280-364 273-343 (363)
84 cd03799 GT1_amsK_like This is 98.1 0.00022 4.9E-09 66.4 17.9 80 270-361 238-330 (355)
85 PLN02846 digalactosyldiacylgly 98.1 0.00084 1.8E-08 64.4 21.1 71 274-359 290-364 (462)
86 cd03809 GT1_mtfB_like This fam 98.1 0.00022 4.8E-09 66.6 17.0 87 270-370 255-348 (365)
87 TIGR03088 stp2 sugar transfera 98.0 0.005 1.1E-07 58.1 25.4 72 279-362 267-342 (374)
88 PLN00142 sucrose synthase 97.9 0.0032 7E-08 64.0 22.9 66 289-364 669-742 (815)
89 COG1519 KdtA 3-deoxy-D-manno-o 97.9 0.002 4.4E-08 59.6 18.9 75 290-373 327-401 (419)
90 TIGR03087 stp1 sugar transfera 97.9 0.0034 7.4E-08 59.8 21.6 107 270-393 282-394 (397)
91 PLN02275 transferase, transfer 97.8 0.0089 1.9E-07 56.4 22.9 115 11-133 4-136 (371)
92 cd03792 GT1_Trehalose_phosphor 97.8 0.012 2.5E-07 55.6 23.1 98 280-394 269-370 (372)
93 KOG3349 Predicted glycosyltran 97.8 6.3E-05 1.4E-09 58.6 5.9 60 274-336 69-133 (170)
94 TIGR02095 glgA glycogen/starch 97.7 0.004 8.7E-08 60.9 19.5 67 280-357 361-436 (473)
95 COG0381 WecB UDP-N-acetylgluco 97.6 0.0028 6.2E-08 58.1 15.4 100 274-391 271-370 (383)
96 PRK15179 Vi polysaccharide bio 97.5 0.073 1.6E-06 54.1 25.1 89 270-368 576-673 (694)
97 PRK00654 glgA glycogen synthas 97.5 0.015 3.3E-07 56.7 20.0 67 280-357 352-427 (466)
98 cd03806 GT1_ALG11_like This fa 97.5 0.029 6.3E-07 53.9 21.4 77 270-359 307-393 (419)
99 PLN02949 transferase, transfer 97.5 0.099 2.2E-06 50.8 24.3 77 270-358 337-422 (463)
100 PF00534 Glycos_transf_1: Glyc 97.2 0.0026 5.6E-08 52.7 9.5 86 270-367 75-167 (172)
101 cd04950 GT1_like_1 Glycosyltra 97.2 0.12 2.5E-06 48.9 21.3 76 270-359 256-341 (373)
102 cd04946 GT1_AmsK_like This fam 97.1 0.0076 1.6E-07 57.7 12.9 129 248-390 264-406 (407)
103 TIGR03568 NeuC_NnaA UDP-N-acet 97.1 0.0081 1.7E-07 56.5 12.4 114 12-133 1-127 (365)
104 PRK15484 lipopolysaccharide 1, 97.0 0.0061 1.3E-07 57.7 10.8 110 270-394 259-376 (380)
105 PLN02501 digalactosyldiacylgly 96.9 0.078 1.7E-06 53.0 17.1 73 273-360 606-683 (794)
106 PF13477 Glyco_trans_4_2: Glyc 96.9 0.017 3.7E-07 45.9 10.7 102 13-131 1-107 (139)
107 PF13844 Glyco_transf_41: Glyc 96.8 0.0036 7.7E-08 59.7 7.1 84 272-364 346-436 (468)
108 PRK15427 colanic acid biosynth 96.8 0.011 2.3E-07 56.6 10.6 110 270-394 281-404 (406)
109 PRK14089 ipid-A-disaccharide s 96.7 0.0021 4.5E-08 59.5 4.6 97 279-386 230-341 (347)
110 PRK01021 lpxB lipid-A-disaccha 96.6 0.082 1.8E-06 52.0 15.1 102 279-384 483-597 (608)
111 PF01975 SurE: Survival protei 96.5 0.023 4.9E-07 48.1 9.4 116 12-133 1-135 (196)
112 PF13579 Glyco_trans_4_4: Glyc 96.4 0.0081 1.8E-07 48.6 5.9 95 26-131 5-104 (160)
113 PRK09814 beta-1,6-galactofuran 96.3 0.013 2.9E-07 54.4 7.2 77 299-391 253-331 (333)
114 COG5017 Uncharacterized conser 96.2 0.0093 2E-07 45.9 4.5 54 281-337 62-123 (161)
115 cd04949 GT1_gtfA_like This fam 96.0 0.04 8.7E-07 51.8 9.4 72 280-360 274-347 (372)
116 PF02684 LpxB: Lipid-A-disacch 96.0 0.23 5.1E-06 46.4 13.9 101 279-384 255-366 (373)
117 PF13524 Glyco_trans_1_2: Glyc 95.9 0.14 3.1E-06 37.3 9.9 81 293-390 9-91 (92)
118 PF02350 Epimerase_2: UDP-N-ac 95.9 0.0051 1.1E-07 57.3 2.5 79 274-367 248-327 (346)
119 cd03804 GT1_wbaZ_like This fam 95.5 0.022 4.7E-07 53.2 5.2 86 270-367 244-336 (351)
120 TIGR02918 accessory Sec system 95.4 0.048 1E-06 53.5 7.5 84 270-359 378-468 (500)
121 cd03813 GT1_like_3 This family 95.4 0.28 6.1E-06 48.0 12.7 82 274-366 360-450 (475)
122 PRK13932 stationary phase surv 94.7 0.37 8.1E-06 42.4 10.1 114 10-131 4-133 (257)
123 PRK02261 methylaspartate mutas 94.5 0.12 2.7E-06 40.9 6.2 49 9-57 1-49 (137)
124 COG0763 LpxB Lipid A disacchar 94.4 2.1 4.5E-05 39.7 14.6 105 281-393 261-379 (381)
125 PHA01630 putative group 1 glyc 94.1 0.26 5.6E-06 45.6 8.4 40 14-53 2-41 (331)
126 PF08660 Alg14: Oligosaccharid 93.4 0.37 8.1E-06 39.7 7.2 109 19-131 5-129 (170)
127 PF13692 Glyco_trans_1_4: Glyc 93.4 0.075 1.6E-06 41.8 3.1 66 281-358 67-135 (135)
128 PRK13934 stationary phase surv 93.3 1.2 2.5E-05 39.5 10.5 111 12-131 1-127 (266)
129 KOG4626 O-linked N-acetylgluco 93.0 0.52 1.1E-05 46.1 8.4 78 287-375 840-918 (966)
130 COG0496 SurE Predicted acid ph 92.7 1.1 2.3E-05 39.3 9.2 113 12-134 1-128 (252)
131 PRK13933 stationary phase surv 92.2 2.2 4.8E-05 37.6 10.7 112 12-131 1-129 (253)
132 PF13439 Glyco_transf_4: Glyco 91.8 0.53 1.2E-05 38.4 6.3 99 21-134 11-112 (177)
133 PRK13935 stationary phase surv 91.7 2.2 4.7E-05 37.6 10.1 111 12-131 1-128 (253)
134 TIGR00087 surE 5'/3'-nucleotid 91.6 2.2 4.7E-05 37.5 10.0 111 12-131 1-128 (244)
135 PRK15490 Vi polysaccharide bio 91.4 1.4 3E-05 43.4 9.4 61 270-337 457-522 (578)
136 TIGR02400 trehalose_OtsA alpha 91.1 1.5 3.2E-05 42.6 9.3 100 275-394 343-455 (456)
137 PHA01633 putative glycosyl tra 91.0 0.74 1.6E-05 42.5 6.9 53 13-76 2-54 (335)
138 PRK00346 surE 5'(3')-nucleotid 91.0 2.9 6.4E-05 36.8 10.2 110 12-131 1-124 (250)
139 PRK14098 glycogen synthase; Pr 90.5 2.4 5.1E-05 41.7 10.3 101 248-356 337-449 (489)
140 COG1817 Uncharacterized protei 90.0 4.6 0.0001 36.4 10.4 106 13-135 2-116 (346)
141 PLN02316 synthase/transferase 89.5 2.4 5.3E-05 45.0 9.8 109 280-398 915-1036(1036)
142 cd02067 B12-binding B12 bindin 89.3 0.89 1.9E-05 34.9 5.1 41 13-53 1-41 (119)
143 cd03791 GT1_Glycogen_synthase_ 89.1 1.1 2.3E-05 43.9 6.7 66 281-357 367-441 (476)
144 PF06258 Mito_fiss_Elm1: Mitoc 88.5 20 0.00043 32.9 17.6 58 277-337 221-282 (311)
145 PRK10017 colanic acid biosynth 88.3 3.1 6.7E-05 40.0 9.0 100 280-395 323-424 (426)
146 PF02951 GSH-S_N: Prokaryotic 88.3 0.98 2.1E-05 34.7 4.6 40 12-51 1-43 (119)
147 cd01635 Glycosyltransferase_GT 88.2 2.4 5.1E-05 36.0 7.7 70 21-133 12-85 (229)
148 PF02441 Flavoprotein: Flavopr 87.7 1 2.2E-05 35.3 4.5 45 12-57 1-45 (129)
149 COG3914 Spy Predicted O-linked 87.7 3.7 8E-05 40.1 8.9 63 282-353 506-573 (620)
150 PF12000 Glyco_trans_4_3: Gkyc 87.6 2.5 5.5E-05 34.8 6.9 82 37-130 1-95 (171)
151 TIGR02193 heptsyl_trn_I lipopo 87.2 2 4.3E-05 39.5 6.9 108 13-129 1-112 (319)
152 PRK12342 hypothetical protein; 86.9 7 0.00015 34.6 9.7 95 28-132 40-145 (254)
153 PRK10916 ADP-heptose:LPS hepto 86.9 5 0.00011 37.4 9.4 102 12-128 1-106 (348)
154 PRK03359 putative electron tra 86.6 6.7 0.00015 34.7 9.5 94 28-132 41-148 (256)
155 PRK08305 spoVFB dipicolinate s 86.3 1.6 3.4E-05 36.9 5.1 45 9-54 3-48 (196)
156 PRK14099 glycogen synthase; Pr 86.1 1.2 2.6E-05 43.7 5.0 41 9-49 1-47 (485)
157 PRK06849 hypothetical protein; 85.7 5.1 0.00011 38.0 9.0 81 10-110 3-84 (389)
158 PRK10964 ADP-heptose:LPS hepto 85.0 5.2 0.00011 36.8 8.5 46 12-57 1-48 (322)
159 PRK05973 replicative DNA helic 84.9 7 0.00015 34.2 8.7 47 11-57 64-110 (237)
160 TIGR03713 acc_sec_asp1 accesso 84.8 1.9 4.1E-05 42.5 5.7 63 281-360 425-490 (519)
161 smart00851 MGS MGS-like domain 84.1 11 0.00023 27.3 8.1 78 28-127 2-89 (90)
162 PLN03063 alpha,alpha-trehalose 83.1 6.4 0.00014 41.2 8.9 98 280-396 371-478 (797)
163 PRK13931 stationary phase surv 83.0 8.9 0.00019 34.0 8.5 110 13-131 2-129 (261)
164 cd03788 GT1_TPS Trehalose-6-Ph 82.7 3.5 7.7E-05 40.1 6.6 100 274-393 347-459 (460)
165 cd01965 Nitrogenase_MoFe_beta_ 82.6 6.8 0.00015 37.8 8.4 98 10-130 298-396 (428)
166 COG0541 Ffh Signal recognition 82.5 4.8 0.0001 38.1 6.9 91 11-111 100-191 (451)
167 COG1703 ArgK Putative periplas 82.4 24 0.00052 31.9 10.8 119 10-133 50-176 (323)
168 TIGR02398 gluc_glyc_Psyn gluco 82.3 26 0.00057 34.3 12.2 105 271-395 365-482 (487)
169 COG1484 DnaC DNA replication p 82.2 3 6.5E-05 37.0 5.4 48 10-57 104-151 (254)
170 PRK10867 signal recognition pa 82.2 6.7 0.00015 37.7 8.0 91 12-112 101-193 (433)
171 PRK05986 cob(I)alamin adenolsy 82.1 17 0.00037 30.6 9.4 97 9-113 20-126 (191)
172 PF02310 B12-binding: B12 bind 82.0 5 0.00011 30.6 6.1 41 13-53 2-42 (121)
173 PF02142 MGS: MGS-like domain 81.7 2.7 5.9E-05 30.8 4.2 83 28-127 2-94 (95)
174 COG0003 ArsA Predicted ATPase 81.4 6.4 0.00014 36.2 7.3 41 12-52 2-43 (322)
175 cd00561 CobA_CobO_BtuR ATP:cor 80.8 11 0.00023 30.8 7.6 93 13-113 4-106 (159)
176 PRK10422 lipopolysaccharide co 80.3 11 0.00024 35.2 8.8 105 11-128 5-113 (352)
177 PF04127 DFP: DNA / pantothena 80.2 1.3 2.8E-05 37.1 2.3 40 10-49 2-53 (185)
178 cd01974 Nitrogenase_MoFe_beta 80.2 8.7 0.00019 37.1 8.3 96 10-130 302-402 (435)
179 PRK10125 putative glycosyl tra 80.1 9 0.00019 36.6 8.2 39 12-50 1-41 (405)
180 TIGR00715 precor6x_red precorr 79.9 11 0.00025 33.3 8.2 92 12-131 1-100 (256)
181 cd02070 corrinoid_protein_B12- 79.9 5.4 0.00012 33.9 6.0 44 11-54 82-125 (201)
182 PF07355 GRDB: Glycine/sarcosi 79.3 9.3 0.0002 35.1 7.5 77 21-130 30-118 (349)
183 COG2185 Sbm Methylmalonyl-CoA 78.5 5.9 0.00013 31.4 5.2 45 9-53 10-54 (143)
184 cd01424 MGS_CPS_II Methylglyox 78.4 19 0.00041 27.0 8.1 83 23-128 10-100 (110)
185 TIGR01425 SRP54_euk signal rec 78.4 12 0.00026 35.9 8.3 41 12-52 101-141 (429)
186 COG0438 RfaG Glycosyltransfera 77.3 26 0.00056 31.5 10.3 83 272-366 261-350 (381)
187 TIGR02195 heptsyl_trn_II lipop 76.3 16 0.00035 33.7 8.6 100 13-127 1-104 (334)
188 COG0059 IlvC Ketol-acid reduct 76.1 16 0.00035 32.9 7.8 55 9-76 16-70 (338)
189 PF00448 SRP54: SRP54-type pro 76.0 5.5 0.00012 33.7 4.9 90 13-112 3-93 (196)
190 cd03115 SRP The signal recogni 75.9 26 0.00057 28.7 9.0 90 14-113 3-93 (173)
191 TIGR00708 cobA cob(I)alamin ad 75.7 33 0.00071 28.4 9.1 92 13-113 7-108 (173)
192 TIGR02370 pyl_corrinoid methyl 75.4 8.3 0.00018 32.7 5.9 48 10-57 83-130 (197)
193 PF12146 Hydrolase_4: Putative 75.3 9.4 0.0002 26.8 5.2 37 11-47 15-51 (79)
194 TIGR00959 ffh signal recogniti 75.0 14 0.0003 35.5 7.8 91 12-112 100-192 (428)
195 PRK07313 phosphopantothenoylcy 75.0 5 0.00011 33.5 4.3 43 12-55 2-44 (182)
196 COG0552 FtsY Signal recognitio 75.0 10 0.00022 34.7 6.4 91 11-111 139-230 (340)
197 PRK14099 glycogen synthase; Pr 74.9 15 0.00033 36.0 8.4 72 284-362 369-451 (485)
198 cd03793 GT1_Glycogen_synthase_ 74.7 25 0.00054 35.1 9.5 79 277-358 467-552 (590)
199 TIGR02201 heptsyl_trn_III lipo 74.4 17 0.00037 33.7 8.3 104 13-128 1-108 (344)
200 PF06722 DUF1205: Protein of u 74.3 2.8 6.2E-05 30.9 2.4 26 233-258 27-52 (97)
201 PRK06029 3-octaprenyl-4-hydrox 74.3 6.9 0.00015 32.7 5.0 45 12-57 2-47 (185)
202 cd00532 MGS-like MGS-like doma 74.2 31 0.00067 26.1 8.2 83 24-128 10-104 (112)
203 cd02071 MM_CoA_mut_B12_BD meth 74.2 8.9 0.00019 29.6 5.3 42 13-54 1-42 (122)
204 PLN03064 alpha,alpha-trehalose 74.1 51 0.0011 35.1 12.1 103 275-396 447-562 (934)
205 PRK06249 2-dehydropantoate 2-r 74.0 9.3 0.0002 35.0 6.3 43 9-57 3-45 (313)
206 KOG0853 Glycosyltransferase [C 73.6 3.8 8.2E-05 39.7 3.6 72 288-367 368-442 (495)
207 cd03466 Nitrogenase_NifN_2 Nit 73.4 27 0.00058 33.7 9.5 98 10-130 299-397 (429)
208 COG3660 Predicted nucleoside-d 73.4 31 0.00068 30.5 8.6 62 247-312 198-271 (329)
209 TIGR02655 circ_KaiC circadian 73.3 27 0.00057 34.4 9.6 97 10-113 262-364 (484)
210 cd03789 GT1_LPS_heptosyltransf 73.2 37 0.0008 30.3 10.0 101 13-128 1-105 (279)
211 TIGR01285 nifN nitrogenase mol 72.5 29 0.00063 33.5 9.5 88 10-130 310-398 (432)
212 PRK09620 hypothetical protein; 72.5 5.8 0.00013 34.5 4.3 40 9-48 1-52 (229)
213 TIGR02852 spore_dpaB dipicolin 71.4 8 0.00017 32.4 4.7 41 12-52 1-41 (187)
214 PLN02939 transferase, transfer 71.0 22 0.00047 37.7 8.5 42 9-50 479-526 (977)
215 PRK05920 aromatic acid decarbo 70.9 8.6 0.00019 32.7 4.8 45 11-56 3-47 (204)
216 TIGR02015 BchY chlorophyllide 70.3 43 0.00094 32.2 10.0 90 12-130 286-380 (422)
217 PRK05579 bifunctional phosphop 68.9 10 0.00022 36.1 5.3 49 8-57 3-51 (399)
218 cd02069 methionine_synthase_B1 68.9 14 0.00031 31.7 5.9 47 10-56 87-133 (213)
219 TIGR01007 eps_fam capsular exo 68.3 8.1 0.00017 32.8 4.3 48 3-50 8-57 (204)
220 cd01423 MGS_CPS_I_III Methylgl 68.2 27 0.00059 26.5 6.8 85 24-127 11-105 (116)
221 PRK14974 cell division protein 67.6 24 0.00052 32.7 7.4 40 12-51 141-180 (336)
222 COG1618 Predicted nucleotide k 67.5 15 0.00032 29.9 5.1 55 11-75 5-59 (179)
223 PRK02797 4-alpha-L-fucosyltran 67.3 11 0.00024 34.1 5.0 77 272-356 211-292 (322)
224 TIGR02237 recomb_radB DNA repa 67.3 30 0.00065 29.3 7.7 94 12-113 13-108 (209)
225 cd03791 GT1_Glycogen_synthase_ 67.1 7.9 0.00017 37.8 4.5 38 13-50 1-44 (476)
226 PF02374 ArsA_ATPase: Anion-tr 67.1 8.5 0.00018 35.2 4.3 42 12-53 1-43 (305)
227 TIGR00064 ftsY signal recognit 66.9 36 0.00079 30.5 8.3 40 12-51 73-112 (272)
228 PRK14098 glycogen synthase; Pr 66.8 9.5 0.00021 37.5 4.9 38 12-49 6-49 (489)
229 PF01210 NAD_Gly3P_dh_N: NAD-d 66.6 4.7 0.0001 32.7 2.4 32 13-49 1-32 (157)
230 TIGR02919 accessory Sec system 66.5 13 0.00028 35.9 5.6 85 274-370 335-424 (438)
231 PLN02316 synthase/transferase 66.5 11 0.00024 40.3 5.5 41 10-50 586-632 (1036)
232 COG4370 Uncharacterized protei 66.2 16 0.00036 32.8 5.6 90 272-366 281-387 (412)
233 TIGR00521 coaBC_dfp phosphopan 66.2 13 0.00028 35.3 5.4 47 10-57 2-48 (390)
234 PRK13982 bifunctional SbtC-lik 66.0 8.9 0.00019 37.2 4.4 42 8-49 253-306 (475)
235 PF08323 Glyco_transf_5: Starc 65.7 9.6 0.00021 33.5 4.3 37 13-49 1-43 (245)
236 PRK00771 signal recognition pa 65.5 30 0.00066 33.3 7.9 42 11-52 95-136 (437)
237 PRK14501 putative bifunctional 65.2 16 0.00035 37.9 6.5 107 274-396 348-463 (726)
238 COG2086 FixA Electron transfer 65.2 69 0.0015 28.5 9.4 92 28-131 42-146 (260)
239 PLN02924 thymidylate kinase 65.0 14 0.0003 31.9 5.1 49 1-49 6-54 (220)
240 TIGR01283 nifE nitrogenase mol 64.7 77 0.0017 30.9 10.7 91 10-130 325-420 (456)
241 TIGR02113 coaC_strep phosphopa 64.7 11 0.00024 31.3 4.2 43 12-55 1-43 (177)
242 TIGR01501 MthylAspMutase methy 64.6 22 0.00049 27.9 5.7 47 11-57 1-47 (134)
243 PF09001 DUF1890: Domain of un 64.4 10 0.00022 29.7 3.5 35 23-57 11-45 (139)
244 cd03114 ArgK-like The function 64.0 74 0.0016 25.4 9.4 35 14-48 2-36 (148)
245 PF04464 Glyphos_transf: CDP-G 63.9 8.4 0.00018 36.2 3.8 104 276-389 261-367 (369)
246 cd01980 Chlide_reductase_Y Chl 63.2 33 0.00072 32.9 7.8 93 13-131 282-376 (416)
247 TIGR03878 thermo_KaiC_2 KaiC d 63.0 33 0.00071 30.5 7.2 41 11-51 36-76 (259)
248 cd01985 ETF The electron trans 62.9 83 0.0018 26.0 9.3 90 27-128 23-120 (181)
249 PF02844 GARS_N: Phosphoribosy 62.7 32 0.00069 25.5 5.8 86 12-127 1-90 (100)
250 PRK05632 phosphate acetyltrans 62.5 85 0.0018 32.4 10.9 100 13-134 4-117 (684)
251 PF01012 ETF: Electron transfe 62.0 25 0.00054 28.6 5.9 99 22-130 10-121 (164)
252 PF01695 IstB_IS21: IstB-like 61.9 13 0.00028 30.9 4.2 46 11-56 47-92 (178)
253 KOG0780 Signal recognition par 61.6 30 0.00065 32.4 6.6 96 6-111 95-192 (483)
254 COG1797 CobB Cobyrinic acid a, 61.5 36 0.00079 32.4 7.3 106 17-138 7-126 (451)
255 COG0859 RfaF ADP-heptose:LPS h 61.3 50 0.0011 30.6 8.4 106 12-131 2-110 (334)
256 PRK12921 2-dehydropantoate 2-r 61.1 19 0.0004 32.7 5.5 40 12-56 1-40 (305)
257 cd01635 Glycosyltransferase_GT 60.9 7.5 0.00016 32.9 2.7 46 270-317 163-216 (229)
258 PRK06067 flagellar accessory p 60.6 1E+02 0.0022 26.7 9.9 101 11-113 25-131 (234)
259 PLN02939 transferase, transfer 60.5 15 0.00033 38.7 5.2 78 272-357 841-930 (977)
260 PRK06522 2-dehydropantoate 2-r 60.5 14 0.00031 33.4 4.7 40 12-56 1-41 (304)
261 TIGR00421 ubiX_pad polyprenyl 60.4 14 0.0003 30.9 4.1 43 13-56 1-43 (181)
262 PRK12475 thiamine/molybdopteri 60.3 54 0.0012 30.5 8.3 38 6-48 19-57 (338)
263 PRK13234 nifH nitrogenase redu 60.3 18 0.00039 32.9 5.1 41 9-49 1-42 (295)
264 PRK01077 cobyrinic acid a,c-di 60.3 60 0.0013 31.6 9.0 106 12-134 4-125 (451)
265 PF07429 Glyco_transf_56: 4-al 60.1 16 0.00035 33.6 4.7 105 244-357 212-332 (360)
266 PRK06732 phosphopantothenate-- 60.1 12 0.00025 32.6 3.8 37 12-48 1-49 (229)
267 COG1066 Sms Predicted ATP-depe 59.7 32 0.0007 32.6 6.6 43 11-54 93-135 (456)
268 PRK11199 tyrA bifunctional cho 59.6 68 0.0015 30.3 9.1 95 11-130 98-197 (374)
269 COG1435 Tdk Thymidine kinase [ 59.5 1.1E+02 0.0024 25.9 10.1 99 16-128 9-115 (201)
270 TIGR01286 nifK nitrogenase mol 59.0 44 0.00096 33.1 7.9 96 10-130 362-462 (515)
271 PRK06719 precorrin-2 dehydroge 59.0 20 0.00044 29.1 4.7 36 9-49 11-46 (157)
272 PRK13789 phosphoribosylamine-- 58.6 33 0.00071 33.1 6.8 89 11-127 4-96 (426)
273 PRK08760 replicative DNA helic 57.6 20 0.00044 35.0 5.3 43 12-54 230-273 (476)
274 PF00551 Formyl_trans_N: Formy 57.6 43 0.00093 27.8 6.6 105 12-132 1-110 (181)
275 PRK05595 replicative DNA helic 57.5 50 0.0011 32.0 8.0 43 12-54 202-245 (444)
276 cd01981 Pchlide_reductase_B Pc 57.0 74 0.0016 30.7 9.1 92 11-131 301-396 (430)
277 PRK14478 nitrogenase molybdenu 56.5 1.1E+02 0.0025 29.9 10.3 90 10-129 323-417 (475)
278 PRK04885 ppnK inorganic polyph 56.3 19 0.00042 32.0 4.5 53 285-359 36-94 (265)
279 TIGR00460 fmt methionyl-tRNA f 55.7 1.1E+02 0.0023 28.1 9.4 31 12-47 1-31 (313)
280 PRK08229 2-dehydropantoate 2-r 55.4 18 0.00038 33.6 4.4 40 12-56 3-42 (341)
281 PRK10416 signal recognition pa 55.1 1.1E+02 0.0024 28.2 9.4 41 11-51 114-154 (318)
282 PRK07206 hypothetical protein; 54.8 38 0.00083 32.4 6.7 33 12-49 3-35 (416)
283 cd07038 TPP_PYR_PDC_IPDC_like 54.8 27 0.00058 28.5 4.9 28 287-314 60-93 (162)
284 COG2120 Uncharacterized protei 54.7 22 0.00048 31.1 4.6 43 5-48 4-47 (237)
285 TIGR02700 flavo_MJ0208 archaeo 54.4 23 0.00049 30.9 4.6 45 13-57 1-47 (234)
286 cd02065 B12-binding_like B12 b 54.1 36 0.00078 25.9 5.3 40 14-53 2-41 (125)
287 COG2085 Predicted dinucleotide 54.1 26 0.00057 29.8 4.7 35 12-51 2-36 (211)
288 PF05225 HTH_psq: helix-turn-h 54.0 22 0.00048 21.9 3.2 25 344-368 1-26 (45)
289 PF14336 DUF4392: Domain of un 54.0 44 0.00096 30.3 6.5 48 11-58 40-95 (291)
290 PF06745 KaiC: KaiC; InterPro 53.8 64 0.0014 27.7 7.4 102 10-113 18-126 (226)
291 cd01968 Nitrogenase_NifE_I Nit 53.6 1.2E+02 0.0027 28.9 9.9 93 10-129 286-380 (410)
292 TIGR02699 archaeo_AfpA archaeo 53.6 26 0.00056 29.0 4.5 42 13-55 1-44 (174)
293 COG0052 RpsB Ribosomal protein 53.6 89 0.0019 27.4 7.8 31 103-133 157-189 (252)
294 PF04413 Glycos_transf_N: 3-De 53.2 48 0.001 27.7 6.2 98 13-131 23-126 (186)
295 COG1036 Archaeal flavoproteins 53.2 36 0.00077 27.6 4.9 45 9-54 6-53 (187)
296 PRK02649 ppnK inorganic polyph 53.0 21 0.00046 32.5 4.3 52 288-359 70-125 (305)
297 PRK05225 ketol-acid reductoiso 52.8 13 0.00028 35.7 3.0 36 9-49 34-69 (487)
298 PRK02910 light-independent pro 52.7 74 0.0016 31.6 8.4 93 9-130 291-387 (519)
299 PRK08506 replicative DNA helic 52.6 42 0.00091 32.9 6.6 44 12-55 193-236 (472)
300 PF04244 DPRP: Deoxyribodipyri 52.3 20 0.00044 31.0 3.9 26 23-48 46-71 (224)
301 PRK04296 thymidine kinase; Pro 52.1 90 0.002 26.1 7.8 35 13-47 3-38 (190)
302 PRK02231 ppnK inorganic polyph 51.8 18 0.00039 32.4 3.6 57 280-358 38-98 (272)
303 TIGR00853 pts-lac PTS system, 51.7 44 0.00095 24.4 5.1 40 9-48 1-40 (95)
304 PRK11519 tyrosine kinase; Prov 51.5 1.8E+02 0.0038 30.4 11.2 39 11-49 525-565 (719)
305 PRK09302 circadian clock prote 51.0 46 0.001 32.9 6.7 97 11-113 273-374 (509)
306 COG2910 Putative NADH-flavin r 51.0 33 0.00072 28.6 4.6 35 12-50 1-35 (211)
307 TIGR00750 lao LAO/AO transport 50.9 1.2E+02 0.0025 27.7 8.8 40 11-50 34-73 (300)
308 TIGR01990 bPGM beta-phosphoglu 50.8 1.1E+02 0.0023 25.1 8.1 91 28-129 92-184 (185)
309 cd07037 TPP_PYR_MenD Pyrimidin 50.4 43 0.00094 27.3 5.4 25 289-313 63-93 (162)
310 TIGR02195 heptsyl_trn_II lipop 50.3 2.1E+02 0.0044 26.3 11.4 100 11-131 174-278 (334)
311 PRK11889 flhF flagellar biosyn 50.3 46 0.001 31.7 6.1 41 11-51 241-281 (436)
312 cd01075 NAD_bind_Leu_Phe_Val_D 50.2 26 0.00057 29.7 4.2 35 7-46 24-58 (200)
313 PRK14077 pnk inorganic polypho 50.2 28 0.00061 31.5 4.6 55 283-359 63-121 (287)
314 PF10727 Rossmann-like: Rossma 50.1 46 0.001 25.9 5.2 44 1-50 1-44 (127)
315 PHA02754 hypothetical protein; 49.9 27 0.00058 22.6 3.1 25 351-375 6-30 (67)
316 PRK05647 purN phosphoribosylgl 49.6 91 0.002 26.5 7.4 106 12-132 2-111 (200)
317 PLN02935 Bifunctional NADH kin 49.2 33 0.00072 33.5 5.1 53 284-359 262-319 (508)
318 KOG2941 Beta-1,4-mannosyltrans 49.2 2.2E+02 0.0047 26.6 9.8 120 10-136 11-142 (444)
319 TIGR01862 N2-ase-Ialpha nitrog 49.1 1.9E+02 0.0042 28.0 10.5 94 10-130 316-412 (443)
320 COG2894 MinD Septum formation 48.9 34 0.00074 29.5 4.5 38 12-49 2-41 (272)
321 cd02032 Bchl_like This family 48.7 31 0.00068 30.6 4.7 38 12-49 1-38 (267)
322 PRK11064 wecC UDP-N-acetyl-D-m 48.6 27 0.00058 33.6 4.5 34 9-47 1-34 (415)
323 TIGR02990 ectoine_eutA ectoine 48.5 1.6E+02 0.0035 25.8 9.0 98 25-130 105-213 (239)
324 PRK02155 ppnK NAD(+)/NADH kina 48.4 28 0.00061 31.6 4.3 54 284-359 63-120 (291)
325 cd01121 Sms Sms (bacterial rad 48.3 2E+02 0.0044 27.1 10.2 44 12-55 83-126 (372)
326 PF01075 Glyco_transf_9: Glyco 48.0 1.1E+02 0.0024 26.5 8.2 100 11-133 105-212 (247)
327 PF02558 ApbA: Ketopantoate re 48.0 37 0.00081 26.9 4.7 29 29-57 11-39 (151)
328 PF03446 NAD_binding_2: NAD bi 47.9 22 0.00047 29.0 3.3 31 12-47 2-32 (163)
329 cd03789 GT1_LPS_heptosyltransf 47.8 1.6E+02 0.0034 26.2 9.2 87 26-132 140-226 (279)
330 cd07039 TPP_PYR_POX Pyrimidine 47.8 51 0.0011 26.9 5.5 26 288-313 65-96 (164)
331 cd01977 Nitrogenase_VFe_alpha 47.6 1.3E+02 0.0028 28.9 9.0 94 10-130 287-383 (415)
332 PRK13604 luxD acyl transferase 47.6 40 0.00088 30.7 5.2 36 11-46 36-71 (307)
333 PRK13982 bifunctional SbtC-lik 47.5 36 0.00078 33.2 5.1 48 9-57 68-115 (475)
334 PRK09739 hypothetical protein; 47.5 51 0.0011 27.8 5.6 38 9-46 1-41 (199)
335 cd01394 radB RadB. The archaea 47.2 1.8E+02 0.0039 24.7 10.6 36 14-49 22-57 (218)
336 CHL00072 chlL photochlorophyll 47.0 38 0.00083 30.7 5.0 39 12-50 1-39 (290)
337 PRK08939 primosomal protein Dn 46.9 41 0.00088 30.8 5.2 46 12-57 157-202 (306)
338 PRK14619 NAD(P)H-dependent gly 46.9 30 0.00065 31.6 4.4 35 10-49 3-37 (308)
339 PRK09165 replicative DNA helic 46.8 1.3E+02 0.0027 29.8 8.9 44 13-56 219-277 (497)
340 PRK14476 nitrogenase molybdenu 46.6 1.5E+02 0.0033 28.9 9.3 87 10-130 310-396 (455)
341 PRK09435 membrane ATPase/prote 46.3 2.5E+02 0.0054 26.1 11.6 41 11-51 56-96 (332)
342 COG4081 Uncharacterized protei 46.2 46 0.001 25.7 4.4 39 13-51 5-44 (148)
343 PRK08535 translation initiatio 46.2 1.5E+02 0.0033 27.1 8.8 31 103-133 196-232 (310)
344 COG0143 MetG Methionyl-tRNA sy 46.1 39 0.00084 33.7 5.2 38 12-49 5-52 (558)
345 PRK00207 sulfur transfer compl 46.1 54 0.0012 25.5 5.1 40 12-51 1-44 (128)
346 cd01425 RPS2 Ribosomal protein 45.8 1.1E+02 0.0025 25.7 7.4 31 103-133 128-160 (193)
347 PRK14569 D-alanyl-alanine synt 45.8 44 0.00094 30.3 5.3 39 9-47 1-43 (296)
348 COG0467 RAD55 RecA-superfamily 45.5 63 0.0014 28.6 6.2 48 11-58 23-70 (260)
349 PLN02240 UDP-glucose 4-epimera 45.4 36 0.00078 31.5 4.8 35 8-46 2-36 (352)
350 PRK06321 replicative DNA helic 45.3 73 0.0016 31.2 6.9 43 13-55 228-271 (472)
351 PRK06835 DNA replication prote 45.2 45 0.00098 30.8 5.2 45 12-56 184-228 (329)
352 COG1763 MobB Molybdopterin-gua 45.2 47 0.001 27.1 4.7 39 12-50 2-41 (161)
353 COG2109 BtuR ATP:corrinoid ade 45.1 1.2E+02 0.0026 25.4 7.1 97 10-113 27-133 (198)
354 COG4088 Predicted nucleotide k 45.1 31 0.00067 29.4 3.7 104 12-137 2-114 (261)
355 PRK08223 hypothetical protein; 44.8 2.4E+02 0.0052 25.5 9.6 38 6-48 22-60 (287)
356 PRK01175 phosphoribosylformylg 44.8 50 0.0011 29.4 5.3 38 9-49 1-38 (261)
357 PRK08006 replicative DNA helic 44.3 64 0.0014 31.5 6.4 43 12-54 225-268 (471)
358 TIGR03877 thermo_KaiC_1 KaiC d 44.3 83 0.0018 27.4 6.6 103 11-113 21-137 (237)
359 PF07991 IlvN: Acetohydroxy ac 44.2 41 0.00089 27.4 4.2 51 10-75 3-55 (165)
360 PF02571 CbiJ: Precorrin-6x re 44.2 55 0.0012 28.9 5.4 94 12-132 1-102 (249)
361 COG0859 RfaF ADP-heptose:LPS h 44.0 2.6E+02 0.0057 25.8 11.4 102 11-134 175-281 (334)
362 PRK12767 carbamoyl phosphate s 43.7 70 0.0015 29.3 6.4 33 12-50 2-36 (326)
363 TIGR01281 DPOR_bchL light-inde 43.7 42 0.00092 29.8 4.8 38 12-49 1-38 (268)
364 TIGR00640 acid_CoA_mut_C methy 43.6 84 0.0018 24.6 5.8 42 10-51 1-42 (132)
365 PRK13185 chlL protochlorophyll 43.6 42 0.00092 29.8 4.8 36 13-48 4-39 (270)
366 cd01973 Nitrogenase_VFe_beta_l 43.6 2.6E+02 0.0056 27.3 10.4 96 10-130 304-406 (454)
367 KOG0832 Mitochondrial/chloropl 43.4 1.2E+02 0.0026 26.2 6.8 109 21-134 90-207 (251)
368 cd02034 CooC The accessory pro 43.3 59 0.0013 24.7 4.9 37 13-49 1-37 (116)
369 PF07015 VirC1: VirC1 protein; 43.2 69 0.0015 27.8 5.7 42 13-54 3-45 (231)
370 PRK07533 enoyl-(acyl carrier p 43.1 40 0.00086 29.7 4.5 42 4-47 1-44 (258)
371 PRK04328 hypothetical protein; 43.1 2.3E+02 0.005 24.9 11.1 103 11-113 23-139 (249)
372 PRK05636 replicative DNA helic 43.0 33 0.00071 33.9 4.2 43 12-54 266-309 (505)
373 PRK06372 translation initiatio 42.9 1.1E+02 0.0024 27.1 6.9 18 114-131 176-193 (253)
374 cd01018 ZntC Metal binding pro 42.8 2.3E+02 0.005 25.1 9.4 77 41-133 171-250 (266)
375 PRK12726 flagellar biosynthesi 42.8 72 0.0016 30.2 6.1 41 12-52 207-247 (407)
376 cd01715 ETF_alpha The electron 42.8 1.8E+02 0.004 23.6 10.2 44 88-131 68-115 (168)
377 TIGR00511 ribulose_e2b2 ribose 42.8 1.8E+02 0.0038 26.6 8.6 20 114-133 208-227 (301)
378 PRK01911 ppnK inorganic polyph 42.5 41 0.00088 30.5 4.4 54 284-359 64-121 (292)
379 TIGR01278 DPOR_BchB light-inde 42.3 1.2E+02 0.0026 30.0 8.1 93 10-131 294-390 (511)
380 PRK08181 transposase; Validate 42.3 51 0.0011 29.5 5.0 45 11-55 106-150 (269)
381 KOG3339 Predicted glycosyltran 42.3 2E+02 0.0044 24.0 7.8 24 16-39 42-65 (211)
382 TIGR01380 glut_syn glutathione 42.1 42 0.0009 30.8 4.6 40 12-51 1-43 (312)
383 PRK10916 ADP-heptose:LPS hepto 42.1 1.9E+02 0.0041 26.8 9.1 102 12-131 181-288 (348)
384 PF06564 YhjQ: YhjQ protein; 42.1 53 0.0012 28.8 4.9 37 12-48 2-39 (243)
385 PRK06988 putative formyltransf 41.9 2.1E+02 0.0046 26.2 9.1 32 12-48 3-34 (312)
386 PLN02929 NADH kinase 41.9 42 0.00091 30.5 4.4 67 283-359 63-138 (301)
387 CHL00076 chlB photochlorophyll 41.6 2.4E+02 0.0053 28.0 10.0 92 10-130 304-399 (513)
388 PF13419 HAD_2: Haloacid dehal 41.4 1.2E+02 0.0026 24.1 6.9 91 28-129 82-176 (176)
389 PRK07004 replicative DNA helic 41.1 67 0.0015 31.3 6.0 44 12-55 214-258 (460)
390 PF02702 KdpD: Osmosensitive K 40.8 49 0.0011 28.1 4.2 40 11-50 5-44 (211)
391 PRK10499 PTS system N,N'-diace 40.5 71 0.0015 23.9 4.8 37 9-45 1-37 (106)
392 PF09334 tRNA-synt_1g: tRNA sy 40.5 22 0.00048 33.7 2.6 30 20-49 14-46 (391)
393 PRK10037 cell division protein 40.4 52 0.0011 28.9 4.8 37 13-49 3-40 (250)
394 cd00316 Oxidoreductase_nitroge 40.4 1.8E+02 0.0039 27.5 8.8 96 10-131 278-374 (399)
395 COG3349 Uncharacterized conser 40.3 33 0.00071 33.4 3.6 33 12-49 1-33 (485)
396 cd07035 TPP_PYR_POX_like Pyrim 40.3 1.2E+02 0.0025 24.2 6.5 25 290-314 63-93 (155)
397 TIGR00745 apbA_panE 2-dehydrop 40.3 37 0.0008 30.5 3.9 28 30-57 5-32 (293)
398 PRK03708 ppnK inorganic polyph 40.2 35 0.00076 30.7 3.6 52 288-359 59-113 (277)
399 PRK06718 precorrin-2 dehydroge 40.2 49 0.0011 28.1 4.4 36 9-49 8-43 (202)
400 PRK03378 ppnK inorganic polyph 40.2 47 0.001 30.1 4.5 55 283-359 62-120 (292)
401 PF13450 NAD_binding_8: NAD(P) 40.1 38 0.00082 22.9 3.0 21 29-49 9-29 (68)
402 KOG0541 Alkyl hydroperoxide re 40.1 58 0.0013 26.3 4.3 41 9-49 41-88 (171)
403 PRK06526 transposase; Provisio 39.9 36 0.00078 30.2 3.6 45 11-55 98-142 (254)
404 PF03308 ArgK: ArgK protein; 39.7 1.3E+02 0.0029 26.7 6.9 115 10-132 28-153 (266)
405 TIGR01284 alt_nitrog_alph nitr 39.5 1.7E+02 0.0036 28.6 8.5 94 10-130 324-420 (457)
406 KOG3062 RNA polymerase II elon 39.5 68 0.0015 27.8 4.9 35 12-46 2-37 (281)
407 PRK14075 pnk inorganic polypho 39.5 50 0.0011 29.3 4.5 54 286-359 41-95 (256)
408 PRK14477 bifunctional nitrogen 39.4 2.5E+02 0.0055 30.2 10.3 92 10-131 319-415 (917)
409 TIGR00288 conserved hypothetic 39.2 1.1E+02 0.0023 25.0 5.8 34 21-57 114-148 (160)
410 COG2084 MmsB 3-hydroxyisobutyr 39.1 47 0.001 30.0 4.2 33 12-49 1-33 (286)
411 PF09314 DUF1972: Domain of un 39.0 34 0.00073 28.7 3.1 56 12-75 2-62 (185)
412 PRK08335 translation initiatio 39.0 1.5E+02 0.0033 26.6 7.4 31 103-133 185-221 (275)
413 PF03720 UDPG_MGDP_dh_C: UDP-g 38.7 40 0.00087 25.1 3.3 31 26-56 17-47 (106)
414 PRK00994 F420-dependent methyl 38.7 2.2E+02 0.0048 24.8 7.8 92 240-337 23-116 (277)
415 PF01008 IF-2B: Initiation fac 38.6 1.1E+02 0.0023 27.6 6.6 31 103-133 184-220 (282)
416 cd02072 Glm_B12_BD B12 binding 38.6 85 0.0018 24.5 5.0 42 13-54 1-42 (128)
417 TIGR00041 DTMP_kinase thymidyl 38.5 82 0.0018 26.2 5.6 41 9-49 1-41 (195)
418 PRK09841 cryptic autophosphory 38.4 4.4E+02 0.0095 27.5 11.7 40 11-50 530-571 (726)
419 PRK01372 ddl D-alanine--D-alan 38.2 58 0.0013 29.5 4.9 41 9-49 2-46 (304)
420 PF05221 AdoHcyase: S-adenosyl 38.1 1.4E+02 0.0031 26.5 6.9 86 8-113 40-132 (268)
421 cd01017 AdcA Metal binding pro 38.0 1.9E+02 0.0041 25.9 8.1 40 92-131 209-251 (282)
422 PF00185 OTCace: Aspartate/orn 38.0 80 0.0017 25.6 5.1 39 10-51 1-39 (158)
423 PRK00094 gpsA NAD(P)H-dependen 38.0 43 0.00093 30.7 4.0 32 12-48 2-33 (325)
424 PRK04539 ppnK inorganic polyph 38.0 49 0.0011 30.1 4.2 54 284-359 68-125 (296)
425 PRK12377 putative replication 37.8 63 0.0014 28.5 4.8 46 12-57 102-147 (248)
426 COG1154 Dxs Deoxyxylulose-5-ph 37.7 3E+02 0.0065 27.7 9.5 243 92-356 349-622 (627)
427 PRK04148 hypothetical protein; 37.6 71 0.0015 25.1 4.5 34 10-49 16-49 (134)
428 PF01380 SIS: SIS domain SIS d 37.6 1E+02 0.0022 23.4 5.6 46 10-56 52-97 (131)
429 TIGR01861 ANFD nitrogenase iro 37.5 2.3E+02 0.005 28.1 9.1 95 10-131 327-424 (513)
430 COG1058 CinA Predicted nucleot 37.5 1.4E+02 0.003 26.5 6.7 19 29-47 24-42 (255)
431 PRK13869 plasmid-partitioning 37.4 64 0.0014 30.8 5.2 40 10-49 119-160 (405)
432 PRK08309 short chain dehydroge 37.3 2.4E+02 0.0051 23.3 11.4 93 29-134 13-115 (177)
433 TIGR01449 PGP_bact 2-phosphogl 37.3 2.2E+02 0.0049 23.8 8.2 94 28-132 90-187 (213)
434 PF03721 UDPG_MGDP_dh_N: UDP-g 37.2 58 0.0013 27.2 4.3 33 12-49 1-33 (185)
435 PRK07952 DNA replication prote 37.0 69 0.0015 28.2 4.9 45 13-57 101-145 (244)
436 PRK10125 putative glycosyl tra 37.0 59 0.0013 31.1 4.9 59 281-352 303-365 (405)
437 COG0240 GpsA Glycerol-3-phosph 36.9 54 0.0012 30.1 4.3 33 12-49 2-34 (329)
438 PRK06731 flhF flagellar biosyn 36.8 2.3E+02 0.005 25.4 8.2 41 11-51 75-115 (270)
439 cd01976 Nitrogenase_MoFe_alpha 36.6 3.8E+02 0.0083 25.8 10.3 94 10-130 299-394 (421)
440 PRK09302 circadian clock prote 36.6 2.7E+02 0.0058 27.6 9.5 103 11-113 31-141 (509)
441 PRK11780 isoprenoid biosynthes 36.4 85 0.0018 27.0 5.3 38 12-49 2-43 (217)
442 COG1553 DsrE Uncharacterized c 36.4 1.1E+02 0.0023 23.7 5.1 38 13-50 2-43 (126)
443 smart00096 UTG Uteroglobin. 36.3 1.4E+02 0.0031 20.4 5.5 51 344-397 17-67 (69)
444 PF00070 Pyr_redox: Pyridine n 36.0 55 0.0012 22.7 3.5 23 27-49 10-32 (80)
445 COG2210 Peroxiredoxin family p 36.0 86 0.0019 24.7 4.6 42 16-57 8-49 (137)
446 PRK05579 bifunctional phosphop 35.7 80 0.0017 30.1 5.4 42 8-49 185-238 (399)
447 PRK07236 hypothetical protein; 35.7 45 0.00096 31.5 3.8 35 8-47 3-37 (386)
448 PF04695 Pex14_N: Peroxisomal 35.7 45 0.00098 26.3 3.2 47 345-394 2-48 (136)
449 PRK03372 ppnK inorganic polyph 35.7 74 0.0016 29.1 5.0 54 284-359 72-129 (306)
450 PTZ00445 p36-lilke protein; Pr 35.6 2.9E+02 0.0063 23.8 8.7 105 23-132 74-207 (219)
451 PRK08293 3-hydroxybutyryl-CoA 35.6 51 0.0011 29.7 4.0 34 10-48 2-35 (287)
452 TIGR02931 anfK_nitrog Fe-only 35.5 4.3E+02 0.0093 25.8 10.5 96 10-130 311-413 (461)
453 PF02780 Transketolase_C: Tran 35.5 81 0.0017 24.1 4.6 38 9-48 7-44 (124)
454 PRK05784 phosphoribosylamine-- 35.5 1.7E+02 0.0036 28.9 7.7 34 12-50 1-36 (486)
455 PF05762 VWA_CoxE: VWA domain 35.2 88 0.0019 27.0 5.3 39 10-48 149-188 (222)
456 COG2874 FlaH Predicted ATPases 35.2 1.8E+02 0.004 25.1 6.8 98 16-115 33-136 (235)
457 COG0569 TrkA K+ transport syst 35.1 52 0.0011 28.5 3.8 33 12-49 1-33 (225)
458 PF14626 RNase_Zc3h12a_2: Zc3h 34.9 37 0.0008 25.8 2.4 32 25-56 9-40 (122)
459 COG0452 Dfp Phosphopantothenoy 34.8 62 0.0013 30.8 4.5 47 10-57 3-49 (392)
460 PLN02880 tyrosine decarboxylas 34.8 52 0.0011 32.4 4.1 70 287-356 147-234 (490)
461 PF13499 EF-hand_7: EF-hand do 34.8 46 0.00099 21.9 2.8 56 336-392 10-65 (66)
462 PRK14620 NAD(P)H-dependent gly 34.7 58 0.0013 30.0 4.3 32 12-48 1-32 (326)
463 PF05159 Capsule_synth: Capsul 34.6 26 0.00057 31.2 2.0 39 272-313 187-225 (269)
464 PRK12311 rpsB 30S ribosomal pr 34.6 2E+02 0.0042 26.6 7.5 31 103-133 153-185 (326)
465 PRK03094 hypothetical protein; 34.5 38 0.00083 23.8 2.3 20 29-48 11-30 (80)
466 PF05361 PP1_inhibitor: PKC-ac 34.4 28 0.00061 27.5 1.8 43 353-398 77-119 (144)
467 PF05693 Glycogen_syn: Glycoge 34.2 46 0.00099 33.3 3.6 39 103-141 142-183 (633)
468 PF12695 Abhydrolase_5: Alpha/ 33.9 80 0.0017 24.3 4.6 36 15-50 2-37 (145)
469 TIGR03026 NDP-sugDHase nucleot 33.9 60 0.0013 31.1 4.4 31 12-47 1-31 (411)
470 cd01983 Fer4_NifH The Fer4_Nif 33.8 1E+02 0.0022 21.6 4.8 33 14-46 2-34 (99)
471 COG0297 GlgA Glycogen synthase 33.8 1.7E+02 0.0037 28.8 7.4 95 293-396 380-478 (487)
472 COG1927 Mtd Coenzyme F420-depe 33.7 3E+02 0.0065 23.5 8.5 90 240-337 23-116 (277)
473 PRK01185 ppnK inorganic polyph 33.5 65 0.0014 28.9 4.2 54 284-359 52-106 (271)
474 PRK10422 lipopolysaccharide co 33.5 2.6E+02 0.0056 26.0 8.5 85 27-131 203-289 (352)
475 TIGR03453 partition_RepA plasm 33.3 79 0.0017 30.0 5.1 40 10-49 102-143 (387)
476 COG0678 AHP1 Peroxiredoxin [Po 33.3 76 0.0016 25.4 4.0 39 10-48 36-81 (165)
477 PRK14106 murD UDP-N-acetylmura 33.3 61 0.0013 31.3 4.4 36 9-49 3-38 (450)
478 PRK08057 cobalt-precorrin-6x r 33.1 3.3E+02 0.0071 24.0 8.5 90 12-131 3-100 (248)
479 PRK13236 nitrogenase reductase 33.0 89 0.0019 28.3 5.2 37 11-47 5-42 (296)
480 PTZ00318 NADH dehydrogenase-li 33.0 48 0.001 31.8 3.6 39 8-51 7-45 (424)
481 TIGR01915 npdG NADPH-dependent 32.9 53 0.0011 28.2 3.5 31 12-47 1-32 (219)
482 TIGR01860 VNFD nitrogenase van 32.8 4.2E+02 0.0091 25.9 10.0 93 9-128 325-420 (461)
483 TIGR00524 eIF-2B_rel eIF-2B al 32.8 2.5E+02 0.0054 25.7 7.9 19 115-133 223-241 (303)
484 COG1448 TyrB Aspartate/tyrosin 32.2 1.4E+02 0.003 28.1 6.0 166 194-381 159-334 (396)
485 PHA02519 plasmid partition pro 32.2 88 0.0019 29.7 5.1 37 10-46 104-142 (387)
486 cd02037 MRP-like MRP (Multiple 32.2 86 0.0019 25.5 4.5 31 19-49 8-38 (169)
487 cd00861 ProRS_anticodon_short 32.1 94 0.002 22.1 4.3 35 13-47 3-39 (94)
488 PF00148 Oxidored_nitro: Nitro 32.1 2.8E+02 0.006 26.3 8.6 97 10-131 270-367 (398)
489 PLN00016 RNA-binding protein; 32.0 58 0.0013 30.7 3.9 37 11-49 52-90 (378)
490 PRK12828 short chain dehydroge 32.0 93 0.002 26.5 5.0 35 9-47 5-39 (239)
491 TIGR02009 PGMB-YQAB-SF beta-ph 31.9 2.3E+02 0.005 23.0 7.2 26 24-49 88-114 (185)
492 PF01656 CbiA: CobQ/CobB/MinD/ 31.9 76 0.0016 26.2 4.3 36 17-52 5-40 (195)
493 cd08806 CARD_CARD14_CARMA2 Cas 31.8 1.5E+02 0.0033 21.2 4.9 45 341-395 29-76 (86)
494 cd01967 Nitrogenase_MoFe_alpha 31.8 2.3E+02 0.0051 26.9 8.1 94 10-130 285-380 (406)
495 PF07302 AroM: AroM protein; 31.8 1.9E+02 0.0041 25.0 6.5 29 100-128 175-207 (221)
496 cd02040 NifH NifH gene encodes 31.6 88 0.0019 27.6 4.9 38 12-49 2-39 (270)
497 PF03808 Glyco_tran_WecB: Glyc 31.3 2.9E+02 0.0064 22.6 8.8 94 28-134 37-136 (172)
498 PRK14494 putative molybdopteri 31.1 96 0.0021 27.0 4.7 34 13-46 2-36 (229)
499 cd00550 ArsA_ATPase Oxyanion-t 31.1 80 0.0017 27.9 4.4 36 15-50 4-39 (254)
500 TIGR01005 eps_transp_fam exopo 31.1 4.7E+02 0.01 27.4 10.7 40 11-50 545-586 (754)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=4.3e-62 Score=462.88 Aligned_cols=369 Identities=31% Similarity=0.576 Sum_probs=284.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHK 90 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
+.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+.+... ..++++|+.+|++++++. ..++..
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~-----~~~~i~~v~lp~g~~~~~--~~~~~~ 78 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD-----PKLGITFMSISDGQDDDP--PRDFFS 78 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC-----CCCCEEEEECCCCCCCCc--cccHHH
Confidence 4699999999999999999999999999999999999998776654421 123699999998876431 222322
Q ss_pred HHhhchh--------hc---cC-C-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCCCc
Q 042709 91 LMTEDPQ--------AD---TE-C-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNGF 157 (398)
Q Consensus 91 ~~~~~~~--------~~---~~-~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (398)
+...+.. .+ +. . ++|||+|.+++|+..+|+++|||++.|+++++..+..+.+++.....+..+..+.
T Consensus 79 l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (448)
T PLN02562 79 IENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGC 158 (448)
T ss_pred HHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccc
Confidence 2222221 11 22 3 5899999999999999999999999999999988887766554333221111111
Q ss_pred cccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccc---------cCCCc
Q 042709 158 AVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPAC---------DLIPS 228 (398)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~---------~~~~~ 228 (398)
+ ........+|+++.+...+++ .++..........+.+.+..+...+++.+++||+.+||+... +..|+
T Consensus 159 ~-~~~~~~~~~Pg~~~l~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~ 236 (448)
T PLN02562 159 P-RQLEKICVLPEQPLLSTEDLP-WLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQ 236 (448)
T ss_pred c-ccccccccCCCCCCCChhhCc-chhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCC
Confidence 1 001122357888888888888 333222112233455555566677899999999999998522 23466
Q ss_pred eecC------C-------------cchHHhhhcCCCCcEEEEEeCCcc-cCCHHHHHHhhc-------------------
Q 042709 229 VLPF------D-------------STCLSWRDKQAIGSVTYVAFGRFS-ILGQEQLEQLAL------------------- 269 (398)
Q Consensus 229 ~~~v------~-------------~~~~~~l~~~~~~~vVyvs~Gs~~-~~~~~~~~~~~~------------------- 269 (398)
+++| . .+|.+||++++++++|||||||+. ..+.+++++++.
T Consensus 237 v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~ 316 (448)
T PLN02562 237 ILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWRE 316 (448)
T ss_pred EEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCchh
Confidence 6666 1 125699999988899999999986 567777777664
Q ss_pred -------------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEec
Q 042709 270 -------------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLL 336 (398)
Q Consensus 270 -------------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~ 336 (398)
+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+.
T Consensus 317 ~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~ 396 (448)
T PLN02562 317 GLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS 396 (448)
T ss_pred hCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC
Confidence 4567999999999999999999999999999999999999999999999999999976579998883
Q ss_pred CCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 337 PDENGIITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 337 ~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
.+++++|.++|+++|+|++||+||++++++++++ .+||||.+++++|+++++
T Consensus 397 -----~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 397 -----GFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred -----CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999999999999999887 667999999999999874
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-61 Score=456.48 Aligned_cols=362 Identities=32% Similarity=0.602 Sum_probs=282.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCC-CCCCCHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQA-DEREDPH 89 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 89 (398)
+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ..++++++.+|+++|++. ...+++.
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-------~~~~i~~~~ipdglp~~~~~~~~~~~ 77 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-------PSSPISIATISDGYDQGGFSSAGSVP 77 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-------CCCCEEEEEcCCCCCCcccccccCHH
Confidence 46999999999999999999999999999999999999876554321 113699999999988732 2233343
Q ss_pred HHHhhchhhc------------cC-Cc-cEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCC
Q 042709 90 KLMTEDPQAD------------TE-CT-ACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPN 155 (398)
Q Consensus 90 ~~~~~~~~~~------------~~-~p-D~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (398)
.++..+.+.+ .. .| +|||+|.+++|+..+|+++|||++.|++++++....+.+ +.. ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~~~----- 150 (449)
T PLN02173 78 EYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-NNG----- 150 (449)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-ccC-----
Confidence 4443332111 12 35 999999999999999999999999999998887755432 111 110
Q ss_pred CccccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC---CceecC
Q 042709 156 GFAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI---PSVLPF 232 (398)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~---~~~~~v 232 (398)
. ....+|++|.+..++++ .++..........+.+.+......+++.+++||+.++|+...+.+ +++++|
T Consensus 151 ------~-~~~~~pg~p~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~V 222 (449)
T PLN02173 151 ------S-LTLPIKDLPLLELQDLP-TFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTI 222 (449)
T ss_pred ------C-ccCCCCCCCCCChhhCC-hhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEE
Confidence 0 11136788888888888 433322222233444555556678899999999999997633221 122222
Q ss_pred ----------------------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc---------------
Q 042709 233 ----------------------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL--------------- 269 (398)
Q Consensus 233 ----------------------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~--------------- 269 (398)
+++|.+||+.++++++|||||||+...+.+++.+++.
T Consensus 223 GPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gLs~~~flWvvr~~~ 302 (449)
T PLN02173 223 GPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAISNFSYLWVVRASE 302 (449)
T ss_pred cccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHhcCCCEEEEEeccc
Confidence 1237799999999999999999999888888888764
Q ss_pred ----------------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEE
Q 042709 270 ----------------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGV 333 (398)
Q Consensus 270 ----------------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~ 333 (398)
+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+
T Consensus 303 ~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv 382 (449)
T PLN02173 303 ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGV 382 (449)
T ss_pred hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceE
Confidence 3567999999999999999999999999999999999999999999999999999998789999
Q ss_pred EecCCC-CCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 334 QLLPDE-NGIITRQEIQINVKALLKND---GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 334 ~l~~~~-~~~~~~~~l~~ai~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
.+..++ ++.+++++|+++|+++|+|+ ++|+||++|++++++++++||||.+++++|++++.
T Consensus 383 ~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 383 RVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred EEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 997533 23579999999999999764 68999999999999999999999999999999875
No 3
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.5e-61 Score=454.78 Aligned_cols=379 Identities=22% Similarity=0.407 Sum_probs=287.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCccch-HHHHHhhcccccCCCCCeEEEEcCCCCCCCC-CC
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHG--IDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQA-DE 84 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 84 (398)
|++.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+....... ....++++|+.+|+...... ..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~~~~~~~ 79 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSI-ASSQPFVRFIDVPELEEKPTLGG 79 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhc-cCCCCCeEEEEeCCCCCCCcccc
Confidence 7889999999999999999999999999998 999999999765 2222211110 01123699999996432111 01
Q ss_pred CCCHHH----HHhhc--------hhhcc----C-C-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhh
Q 042709 85 REDPHK----LMTED--------PQADT----E-C-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKL 146 (398)
Q Consensus 85 ~~~~~~----~~~~~--------~~~~~----~-~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 146 (398)
..+... +...+ .+.++ + . ++|||+|.+++|+..+|+++|||++.|++++++.+..+.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 80 TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 122221 11111 11111 2 3 49999999999999999999999999999999888877665432
Q ss_pred hhhccCCCCCccccccccccccCCC-CCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEecccccccccc---
Q 042709 147 LDAAIIDPNGFAVLNYGLISLSNEI-PALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPA--- 222 (398)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~--- 222 (398)
... + ...+.........+||+ +.+..++++ .++..... ...+.+....+.+++.+++||+.++|++.
T Consensus 160 ~~~---~-~~~~~~~~~~~~~vPgl~~~l~~~dlp-~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~ 230 (468)
T PLN02207 160 HSK---D-TSVFVRNSEEMLSIPGFVNPVPANVLP-SALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVNH 230 (468)
T ss_pred ccc---c-cccCcCCCCCeEECCCCCCCCChHHCc-chhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHHH
Confidence 111 0 00100000122358898 678888888 33322211 23344444567889999999999999872
Q ss_pred ---ccCCCceecC-----------C-------cchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc------------
Q 042709 223 ---CDLIPSVLPF-----------D-------STCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL------------ 269 (398)
Q Consensus 223 ---~~~~~~~~~v-----------~-------~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~------------ 269 (398)
++..|++++| + +++.+||+++++++||||||||....+.+++++++.
T Consensus 231 ~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~ 310 (468)
T PLN02207 231 FLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWS 310 (468)
T ss_pred HHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 2345666665 1 458899999988899999999999999998888876
Q ss_pred -----------------------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhc
Q 042709 270 -----------------------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYIC 326 (398)
Q Consensus 270 -----------------------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~ 326 (398)
+++++|+||.+||+|+++|+|||||||||++||+++|||||++|+++||+.||++++
T Consensus 311 ~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~ 390 (468)
T PLN02207 311 LRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMV 390 (468)
T ss_pred EeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHH
Confidence 245799999999999999999999999999999999999999999999999999887
Q ss_pred cceeeEEEecCC----CCCCcCHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 042709 327 DVWKIGVQLLPD----ENGIITRQEIQINVKALLK--NDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVLR 397 (398)
Q Consensus 327 ~~~g~g~~l~~~----~~~~~~~~~l~~ai~~~l~--~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 397 (398)
+.||+|+++..+ +++.+++++|+++|+++|+ +++||+||++|++++++|+.+||||..++++|+++++..+
T Consensus 391 ~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~~~ 467 (468)
T PLN02207 391 KELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIGIK 467 (468)
T ss_pred HHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 768999988431 1235699999999999997 5799999999999999999999999999999999998754
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2e-61 Score=457.02 Aligned_cols=367 Identities=26% Similarity=0.461 Sum_probs=282.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
++.||+++|+|++||++|++.||+.|+.||+.|||++++.+... .. ....++++.++|+++|++........
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~------~~~~~i~~~~ip~glp~~~~~~~~~~ 77 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS------DDFTDFQFVTIPESLPESDFKNLGPI 77 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc------cCCCCeEEEeCCCCCCcccccccCHH
Confidence 56799999999999999999999999999999999999976421 11 11136999999998887421211222
Q ss_pred HHHhhchh--------hc------cCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhcc-CC
Q 042709 90 KLMTEDPQ--------AD------TEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAI-ID 153 (398)
Q Consensus 90 ~~~~~~~~--------~~------~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (398)
.++..+.+ .+ ... ++|||+|.+++|+..+|+++|||++.|++++++.+..+.+.+.+...+. .+
T Consensus 78 ~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~ 157 (451)
T PLN02410 78 EFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAP 157 (451)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCC
Confidence 23222211 11 124 7999999999999999999999999999999998877766544333221 11
Q ss_pred CCCccccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC-----Cc
Q 042709 154 PNGFAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI-----PS 228 (398)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~-----~~ 228 (398)
..... ......+|+++++...+++ .+.... .......+... ....+++.+++||+.++|+...+.+ ++
T Consensus 158 ~~~~~---~~~~~~iPg~~~~~~~dlp-~~~~~~--~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~ 230 (451)
T PLN02410 158 LKEPK---GQQNELVPEFHPLRCKDFP-VSHWAS--LESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIP 230 (451)
T ss_pred ccccc---cCccccCCCCCCCChHHCc-chhcCC--cHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCC
Confidence 00000 0112257888877777777 322111 11222332222 2357889999999999998643322 34
Q ss_pred eecC----------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc-----------------------
Q 042709 229 VLPF----------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL----------------------- 269 (398)
Q Consensus 229 ~~~v----------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~----------------------- 269 (398)
+++| +++|.+||+++++++||||||||....+.+++.+++.
T Consensus 231 v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~ 310 (451)
T PLN02410 231 VYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEW 310 (451)
T ss_pred EEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccch
Confidence 5544 1236789999998999999999999988888888775
Q ss_pred ---------------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEE
Q 042709 270 ---------------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQ 334 (398)
Q Consensus 270 ---------------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~ 334 (398)
+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.
T Consensus 311 ~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~ 390 (451)
T PLN02410 311 IESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQ 390 (451)
T ss_pred hhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEE
Confidence 45668999999999999999999999999999999999999999999999999999876899999
Q ss_pred ecCCCCCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 042709 335 LLPDENGIITRQEIQINVKALLKND---GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKV 395 (398)
Q Consensus 335 l~~~~~~~~~~~~l~~ai~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 395 (398)
+. +.+++++|+++|+++|+|+ +||++|++|++.+++++++||||..++++|++.++.
T Consensus 391 ~~----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 391 VE----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred eC----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 95 4689999999999999875 799999999999999999999999999999999874
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.6e-61 Score=459.24 Aligned_cols=378 Identities=26% Similarity=0.386 Sum_probs=284.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcC----CCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIP----DGLDLQADER 85 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 85 (398)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++.+... ..++++++.+| +++|++....
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~-----~~~~i~~~~lp~P~~~~lPdG~~~~ 82 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS-----KHPSIETLVLPFPSHPSIPSGVENV 82 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc-----cCCCeeEEeCCCCCcCCCCCCCcCh
Confidence 36899999999999999999999999999999999999998877755421 12357777654 2444443211
Q ss_pred CCH-----HHHHh-------hchhhcc--CC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhc
Q 042709 86 EDP-----HKLMT-------EDPQADT--EC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAA 150 (398)
Q Consensus 86 ~~~-----~~~~~-------~~~~~~~--~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 150 (398)
+++ ..+.. .+.+.++ .. |+|||+|.+++|+..+|+++|||++.|++++++.+..+.+++......
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~ 162 (477)
T PLN02863 83 KDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTK 162 (477)
T ss_pred hhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccc
Confidence 121 11111 1122222 25 899999999999999999999999999999999999887754211000
Q ss_pred cCCCCCccccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC----
Q 042709 151 IIDPNGFAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI---- 226 (398)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~---- 226 (398)
..+ ... ........+|+++.+..++++ .+...........+.+.+.......++.+++||+.++|....+.+
T Consensus 163 ~~~--~~~-~~~~~~~~iPg~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 238 (477)
T PLN02863 163 INP--DDQ-NEILSFSKIPNCPKYPWWQIS-SLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKEL 238 (477)
T ss_pred ccc--ccc-ccccccCCCCCCCCcChHhCc-hhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhc
Confidence 000 000 000112257888888888887 333211111223344444444456778899999999998743321
Q ss_pred --CceecC------C-----------------cchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc------------
Q 042709 227 --PSVLPF------D-----------------STCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL------------ 269 (398)
Q Consensus 227 --~~~~~v------~-----------------~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~------------ 269 (398)
+++++| . +++.+||+.+++++||||||||+...+.+++.+++.
T Consensus 239 ~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~ 318 (477)
T PLN02863 239 GHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWC 318 (477)
T ss_pred CCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEE
Confidence 345444 1 247899999998899999999999888888888876
Q ss_pred -------------------------cce-ecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHH
Q 042709 270 -------------------------GKI-VEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRN 323 (398)
Q Consensus 270 -------------------------~~v-~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 323 (398)
+.+ .+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 319 ~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~ 398 (477)
T PLN02863 319 VKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNAS 398 (477)
T ss_pred ECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHH
Confidence 123 499999999999999999999999999999999999999999999999999
Q ss_pred hhccceeeEEEecCCCCCCcCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 042709 324 YICDVWKIGVQLLPDENGIITRQEIQINVKALL-KNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVL 396 (398)
Q Consensus 324 ~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l-~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 396 (398)
+++++||+|+++..++....+++++.++|+++| ++++||+||++|++++++|+++||||..++++|++.++++
T Consensus 399 ~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 399 LLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 987658999999643234568999999999999 6789999999999999999999999999999999999865
No 6
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=7e-61 Score=451.84 Aligned_cols=364 Identities=26% Similarity=0.469 Sum_probs=280.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCccchH-HHHHhhcccccCCCCCeEEEEcCCCCCCCCC-CC
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAE-HGIDVTFVNTEFIHA-KIIASMQGKAENSSSQIMLVSIPDGLDLQAD-ER 85 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (398)
|++.||+++|+|++||++|++.||+.|+. +|+.|||++++.+.. .+.+. . ...++++|++++++++++.. ..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~---~--~~~~~i~~~~i~dglp~g~~~~~ 75 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN---H--NNVENLSFLTFSDGFDDGVISNT 75 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc---C--CCCCCEEEEEcCCCCCCcccccc
Confidence 67789999999999999999999999996 799999999986421 11111 0 11236999999988876532 12
Q ss_pred CCHHHHHhhchhh--------c---c-C-C-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhcc
Q 042709 86 EDPHKLMTEDPQA--------D---T-E-C-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAI 151 (398)
Q Consensus 86 ~~~~~~~~~~~~~--------~---~-~-~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 151 (398)
++...++..+.+. + . . . ++|||+|.+++|+..+|+++|||++.|++++++.+..+++++. +
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~----~- 150 (455)
T PLN02152 76 DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST----G- 150 (455)
T ss_pred ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc----c-
Confidence 3332222221111 1 1 2 4 6999999999999999999999999999999998888765431 0
Q ss_pred CCCCCccccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhh--ccceEEeccccccccccccCCC--
Q 042709 152 IDPNGFAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFK--ISKWVLNNSVYELDSPACDLIP-- 227 (398)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~t~~~le~~~~~~~~-- 227 (398)
......+|+++.+..++++ .++........+.+.+.+..+... .++.+++||+.+||....+.+.
T Consensus 151 ----------~~~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~ 219 (455)
T PLN02152 151 ----------NNSVFEFPNLPSLEIRDLP-SFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNI 219 (455)
T ss_pred ----------CCCeeecCCCCCCchHHCc-hhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcC
Confidence 0011257888888888888 443322222233344444444443 3579999999999986544331
Q ss_pred ceecC-----------------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc---------------
Q 042709 228 SVLPF-----------------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL--------------- 269 (398)
Q Consensus 228 ~~~~v-----------------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~--------------- 269 (398)
++++| ++++.+||+++++++||||||||+..++.+++++++.
T Consensus 220 ~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~ 299 (455)
T PLN02152 220 EMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITD 299 (455)
T ss_pred CEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 23332 1247899999988899999999999888888888775
Q ss_pred -----------------------------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhh
Q 042709 270 -----------------------------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHH 320 (398)
Q Consensus 270 -----------------------------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~ 320 (398)
+++++|+||.+||+|+++|+|||||||||++||+++|||||++|+++||+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~ 379 (455)
T PLN02152 300 KLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPA 379 (455)
T ss_pred CcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchH
Confidence 134479999999999999999999999999999999999999999999999
Q ss_pred HHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 042709 321 NRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND--GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393 (398)
Q Consensus 321 na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 393 (398)
||+++++.||+|+.+..++++.+++++|+++|+++|+|+ +||+||++|++++++++++||+|++++++|++++
T Consensus 380 na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 380 NAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999998867888888654334679999999999999875 4899999999999999999999999999999986
No 7
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.2e-61 Score=455.40 Aligned_cols=369 Identities=30% Similarity=0.502 Sum_probs=283.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATK--IAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
+.||+++|+|++||++|++.||+. |++||++|||++++.+...+.+.. .....+++..+++++|++. ..+.
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~-----~~~~~~~~~~~~~glp~~~--~~~~ 80 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE-----KPRRPVDLVFFSDGLPKDD--PRAP 80 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc-----CCCCceEEEECCCCCCCCc--ccCH
Confidence 579999999999999999999999 569999999999999877664322 1124688888888887653 1233
Q ss_pred HHHHhhc--------hhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCCCccc
Q 042709 89 HKLMTED--------PQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNGFAV 159 (398)
Q Consensus 89 ~~~~~~~--------~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (398)
..++..+ .+.+++. |||||+|.++.|+..+|+++|||++.|++.++..+..+.+++.. .+..+..
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~~~~~---- 154 (456)
T PLN02210 81 ETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNSFPDL---- 154 (456)
T ss_pred HHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCCCCcc----
Confidence 3333322 2222556 99999999999999999999999999999999888877654321 1111100
Q ss_pred cccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC---CceecC----
Q 042709 160 LNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI---PSVLPF---- 232 (398)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~---~~~~~v---- 232 (398)
........+|+++.+...+++ .++..... ..+...+.+.......++.+++||+.++|....+.+ +++++|
T Consensus 155 ~~~~~~~~~Pgl~~~~~~dl~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~ 232 (456)
T PLN02210 155 EDLNQTVELPALPLLEVRDLP-SFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLV 232 (456)
T ss_pred cccCCeeeCCCCCCCChhhCC-hhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccC
Confidence 000111247888777777777 33222211 111122223333456789999999999998644331 233333
Q ss_pred -----------------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc--------------------
Q 042709 233 -----------------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL-------------------- 269 (398)
Q Consensus 233 -----------------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~-------------------- 269 (398)
+++|.+||+++++++||||||||......+++++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~ 312 (456)
T PLN02210 233 SPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQ 312 (456)
T ss_pred chhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcccc
Confidence 1125789999988899999999999888888888876
Q ss_pred -------------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEec
Q 042709 270 -------------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLL 336 (398)
Q Consensus 270 -------------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~ 336 (398)
+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+.
T Consensus 313 ~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~ 392 (456)
T PLN02210 313 NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMR 392 (456)
T ss_pred chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEe
Confidence 1266999999999999999999999999999999999999999999999999999987689999996
Q ss_pred CCC-CCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 337 PDE-NGIITRQEIQINVKALLKND---GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 337 ~~~-~~~~~~~~l~~ai~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
.++ ++.+++++|+++|+++|+|+ ++|+||++|++.+++|+++||||..++++|+++++
T Consensus 393 ~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 393 NDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred ccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 532 34789999999999999875 49999999999999999999999999999999885
No 8
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=9.1e-61 Score=453.98 Aligned_cols=379 Identities=31% Similarity=0.497 Sum_probs=289.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhc--cc--ccCCCCCeEEEEcCCCCCCCCCCCC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQ--GK--AENSSSQIMLVSIPDGLDLQADERE 86 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (398)
+.||+++|+|++||++|++.||+.|+.+|..|||++++.+..++.+... .. .......++|..+|+++|++.....
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 4799999999999999999999999999999999999987766543110 00 0001124778878888876532222
Q ss_pred CHHHHHhhchhh--------c---c--CC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccC
Q 042709 87 DPHKLMTEDPQA--------D---T--EC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAII 152 (398)
Q Consensus 87 ~~~~~~~~~~~~--------~---~--~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (398)
++..++..+.+. + . .. ++|||+|.+++|+..+|+++|||++.|++++++.+..+.+++ ++..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~----~~~~ 162 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY----HGLV 162 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh----hcCC
Confidence 333333333211 1 1 24 599999999999999999999999999999999988877653 2211
Q ss_pred CCCCccccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC---Cce
Q 042709 153 DPNGFAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI---PSV 229 (398)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~---~~~ 229 (398)
+..... ..... ..+|++|.+..++++ .++..........+.+.+......+++.+++||+.+||....+.+ .++
T Consensus 163 ~~~~~~-~~~~~-~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v 239 (480)
T PLN02555 163 PFPTET-EPEID-VQLPCMPLLKYDEIP-SFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPI 239 (480)
T ss_pred Cccccc-CCCce-eecCCCCCcCHhhCc-ccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCE
Confidence 100000 00111 258999888888888 433322222344455555556678899999999999998643221 013
Q ss_pred ecC---------------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc-------------------
Q 042709 230 LPF---------------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL------------------- 269 (398)
Q Consensus 230 ~~v---------------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~------------------- 269 (398)
++| +++|.+||+++++++||||||||+...+.+++.+++.
T Consensus 240 ~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~ 319 (480)
T PLN02555 240 KPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKD 319 (480)
T ss_pred EEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCccc
Confidence 333 2347889999988899999999999888888888765
Q ss_pred -------------------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhcccee
Q 042709 270 -------------------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWK 330 (398)
Q Consensus 270 -------------------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g 330 (398)
+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||
T Consensus 320 ~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~g 399 (480)
T PLN02555 320 SGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFK 399 (480)
T ss_pred ccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhC
Confidence 2356899999999999999999999999999999999999999999999999999988789
Q ss_pred eEEEecCC--CCCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 042709 331 IGVQLLPD--ENGIITRQEIQINVKALLKND---GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVL 396 (398)
Q Consensus 331 ~g~~l~~~--~~~~~~~~~l~~ai~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 396 (398)
+|+++... +.+.+++++|.++|+++|+++ ++|+||++|++++++++++||||.+++++||+++...
T Consensus 400 vGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 400 TGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred ceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 99999531 124689999999999999753 6999999999999999999999999999999999764
No 9
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-60 Score=456.45 Aligned_cols=378 Identities=27% Similarity=0.426 Sum_probs=291.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEH--GIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERED 87 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (398)
.+.||+++|+|++||++|++.||++|+.| ||+|||++++.+...+.+.. ..++++|+++|+++++......+
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~------~~~gi~fv~lp~~~p~~~~~~~~ 82 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP------KPDNIRFATIPNVIPSELVRAAD 82 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC------CCCCEEEEECCCCCCCccccccC
Confidence 46899999999999999999999999999 99999999999988776642 12479999999876654322233
Q ss_pred HHHHHhhch--------hhccC--C-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCCC
Q 042709 88 PHKLMTEDP--------QADTE--C-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNG 156 (398)
Q Consensus 88 ~~~~~~~~~--------~~~~~--~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (398)
...++..+. +.++. . +||||+|.++.|+..+|+++|||++.|+++++..+..+.+++.....+..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~- 161 (459)
T PLN02448 83 FPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVE- 161 (459)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCc-
Confidence 333333222 11222 5 89999999999999999999999999999999877776665433222211100
Q ss_pred ccccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccC-----CCceec
Q 042709 157 FAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDL-----IPSVLP 231 (398)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~-----~~~~~~ 231 (398)
.+.........+|+++.+...+++ .+.... .....+.+........+++.+++||+.+||+...+. .+++++
T Consensus 162 ~~~~~~~~~~~iPg~~~l~~~dlp-~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~ 238 (459)
T PLN02448 162 LSESGEERVDYIPGLSSTRLSDLP-PIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYP 238 (459)
T ss_pred cccccCCccccCCCCCCCChHHCc-hhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEE
Confidence 000001112357888877777777 333221 122334445555556778899999999999873322 123443
Q ss_pred C---------C------------cchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc---------------------
Q 042709 232 F---------D------------STCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL--------------------- 269 (398)
Q Consensus 232 v---------~------------~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~--------------------- 269 (398)
| + .++.+|++.++.+++|||||||+.....+++++++.
T Consensus 239 iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~~ 318 (459)
T PLN02448 239 IGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEASRLK 318 (459)
T ss_pred ecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCchhhHh
Confidence 3 0 146699999988899999999998888888888775
Q ss_pred ------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCC--CCC
Q 042709 270 ------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPD--ENG 341 (398)
Q Consensus 270 ------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~--~~~ 341 (398)
+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.+..+ +++
T Consensus 319 ~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~ 398 (459)
T PLN02448 319 EICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEET 398 (459)
T ss_pred HhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCC
Confidence 456799999999999999999999999999999999999999999999999999998768999998642 124
Q ss_pred CcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 042709 342 IITRQEIQINVKALLKND-----GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVLR 397 (398)
Q Consensus 342 ~~~~~~l~~ai~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 397 (398)
.+++++|+++|+++|+|+ +||+||++|++++++++.+||||.+++++|+++++.-|
T Consensus 399 ~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~~~ 459 (459)
T PLN02448 399 LVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQGR 459 (459)
T ss_pred cCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccC
Confidence 689999999999999763 79999999999999999999999999999999998644
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.1e-59 Score=449.76 Aligned_cols=378 Identities=22% Similarity=0.392 Sum_probs=284.8
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEeCccchH----HHHHhhcccccCCCCCeEEEEcCCCCCC
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHG----IDVTFVNTEFIHA----KIIASMQGKAENSSSQIMLVSIPDGLDL 80 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rG----h~Vt~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
|.|.||+++|+|++||++|++.||+.|+.|| +.|||++++.+.+ .+........ ....++.|+++|++.++
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~p 79 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREA-ASGLDIRFHHLPAVEPP 79 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcc-cCCCCEEEEECCCCCCC
Confidence 7789999999999999999999999999997 7999999876532 3333211000 11125999999976432
Q ss_pred CCCCCCCHHHHHh----h----chhhcc--CC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhh
Q 042709 81 QADEREDPHKLMT----E----DPQADT--EC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDA 149 (398)
Q Consensus 81 ~~~~~~~~~~~~~----~----~~~~~~--~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 149 (398)
. ..++...++. . +.+.++ .. ++|||+|.+++|+..+|+++|||++.|++++++.+..+.+++.....
T Consensus 80 ~--~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 157 (480)
T PLN00164 80 T--DAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEE 157 (480)
T ss_pred C--ccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhccc
Confidence 2 1122222222 1 122223 23 69999999999999999999999999999999999888776542111
Q ss_pred ccCCCCCccccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC---
Q 042709 150 AIIDPNGFAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI--- 226 (398)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~--- 226 (398)
.+ ...+ ...... .+||++.+..++++ .+..... +.....+....+.+.+++.+++||+.++|+...+.+
T Consensus 158 --~~-~~~~-~~~~~~-~iPGlp~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 229 (480)
T PLN00164 158 --VA-VEFE-EMEGAV-DVPGLPPVPASSLP-APVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADG 229 (480)
T ss_pred --cc-Cccc-ccCcce-ecCCCCCCChHHCC-chhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhc
Confidence 00 0011 000112 47888888888888 3332221 111233344445667899999999999998633221
Q ss_pred --------CceecC---------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc------------c-
Q 042709 227 --------PSVLPF---------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL------------G- 270 (398)
Q Consensus 227 --------~~~~~v---------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~------------~- 270 (398)
+++++| ++++.+||+++++++||||||||+...+.+++.+++. +
T Consensus 230 ~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~ 309 (480)
T PLN00164 230 RCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLR 309 (480)
T ss_pred cccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 455555 1358899999998999999999998888888888876 0
Q ss_pred -------------------------------cee-cccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccch
Q 042709 271 -------------------------------KIV-EWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQ 318 (398)
Q Consensus 271 -------------------------------~v~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ 318 (398)
+++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 310 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ 389 (480)
T PLN00164 310 GPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQ 389 (480)
T ss_pred CCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccc
Confidence 122 799999999999999999999999999999999999999999999
Q ss_pred hhHHHhhccceeeEEEecCCC--CCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 042709 319 HHNRNYICDVWKIGVQLLPDE--NGIITRQEIQINVKALLKND-----GIKGNSLKLKEIARKILVEGGSSFRKFDSFIS 391 (398)
Q Consensus 319 ~~na~~~~~~~g~g~~l~~~~--~~~~~~~~l~~ai~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 391 (398)
+.||+++++.||+|+.+..++ ++.+++++|.++|+++|.|+ .+|++|++|++++++++.+||||.+++++|++
T Consensus 390 ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~ 469 (480)
T PLN00164 390 HLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAR 469 (480)
T ss_pred hhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999998865589999996431 23579999999999999753 48999999999999999999999999999999
Q ss_pred HHHhhh
Q 042709 392 QIKVLR 397 (398)
Q Consensus 392 ~~~~~~ 397 (398)
++.+.|
T Consensus 470 ~~~~~~ 475 (480)
T PLN00164 470 EIRHGA 475 (480)
T ss_pred HHHhcc
Confidence 998765
No 11
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-59 Score=443.60 Aligned_cols=354 Identities=22% Similarity=0.370 Sum_probs=265.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEc--C--CCCCCCCCCCC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSI--P--DGLDLQADERE 86 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~ 86 (398)
+.||+++|+|+.||++|++.||+.|++|||+|||++++.+...+.+.+ ....++.+..+ + ++++++.....
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~-----a~~~~i~~~~l~~p~~dgLp~g~~~~~ 78 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN-----LFPDSIVFHPLTIPPVNGLPAGAETTS 78 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc-----CCCCceEEEEeCCCCccCCCCCccccc
Confidence 579999999999999999999999999999999999998887765543 11224556654 3 45665532221
Q ss_pred CHH----H--------HHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCC
Q 042709 87 DPH----K--------LMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIID 153 (398)
Q Consensus 87 ~~~----~--------~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (398)
++. . +...+.+.+++. +||||+| ++.|+..+|+++|||++.|++++++... +.+.+. +..
T Consensus 79 ~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~~- 151 (442)
T PLN02208 79 DIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GKL- 151 (442)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----ccc-
Confidence 121 1 111222223555 9999999 5789999999999999999999998654 333221 000
Q ss_pred CCCccccccccccccCCCCC----CccCccCcCCCCCCchhhHHHHHHHH-HHHhhhccceEEecccccccccccc----
Q 042709 154 PNGFAVLNYGLISLSNEIPA----LNRNEYTWSFPTEPNIQKIFFGSTCA-TVQAFKISKWVLNNSVYELDSPACD---- 224 (398)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~----~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~t~~~le~~~~~---- 224 (398)
. ..+|++|. +...+++ .+ . .....+..+.. ......+++.+++||+.++|....+
T Consensus 152 --------~---~~~pglp~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~ 215 (442)
T PLN02208 152 --------G---VPPPGYPSSKVLFRENDAH-AL-A---TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISR 215 (442)
T ss_pred --------C---CCCCCCCCcccccCHHHcC-cc-c---ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHh
Confidence 0 01355553 3344555 22 1 11122233332 2235578999999999999986433
Q ss_pred -CCCceecC-------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc---------------------
Q 042709 225 -LIPSVLPF-------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL--------------------- 269 (398)
Q Consensus 225 -~~~~~~~v-------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~--------------------- 269 (398)
..|++++| ++++.+||+.+++++||||||||...++.+++.+++.
T Consensus 216 ~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~ 295 (442)
T PLN02208 216 QYHKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSST 295 (442)
T ss_pred hcCCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccc
Confidence 23667766 2357899999988899999999999888887777653
Q ss_pred ----------------ccee-cccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeE
Q 042709 270 ----------------GKIV-EWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIG 332 (398)
Q Consensus 270 ----------------~~v~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g 332 (398)
+.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|
T Consensus 296 ~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~g 375 (442)
T PLN02208 296 VQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVS 375 (442)
T ss_pred hhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhcee
Confidence 2233 89999999999999999999999999999999999999999999999999877658999
Q ss_pred EEecCCCCCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 042709 333 VQLLPDENGIITRQEIQINVKALLKND-----GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVL 396 (398)
Q Consensus 333 ~~l~~~~~~~~~~~~l~~ai~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 396 (398)
+.++.++++.+++++|+++|+++|+|+ ++|+++++|++.+.+ +|||..++++|+++++++
T Consensus 376 v~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 376 VEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQEY 440 (442)
T ss_pred EEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHh
Confidence 999763234599999999999999764 499999999999854 789999999999999764
No 12
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.2e-59 Score=443.33 Aligned_cols=372 Identities=24% Similarity=0.389 Sum_probs=281.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCC----CCCCCCCC-
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPD----GLDLQADE- 84 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~- 84 (398)
+.||+++|+|++||++|++.||+.|+ .+|++|||++++.+...+.+... ..+++.++.+|. ++++....
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~-----~~~~i~~~~lp~p~~~glp~~~~~~ 79 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL-----NSTGVDIVGLPSPDISGLVDPSAHV 79 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc-----cCCCceEEECCCccccCCCCCCccH
Confidence 57999999999999999999999998 79999999999988765533321 113688999885 44321100
Q ss_pred CCCHHHHH----hhchhhcc--CC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCCCc
Q 042709 85 REDPHKLM----TEDPQADT--EC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNGF 157 (398)
Q Consensus 85 ~~~~~~~~----~~~~~~~~--~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (398)
...+.... ..+.+.++ .. |+|||+|.+++|+..+|+++|||++.|++++++.++.+.+++..... ... ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~--~~~-~~ 156 (481)
T PLN02992 80 VTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD--IKE-EH 156 (481)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc--ccc-cc
Confidence 00111111 22222222 35 99999999999999999999999999999999988776665432111 000 00
Q ss_pred cccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC-----------
Q 042709 158 AVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI----------- 226 (398)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~----------- 226 (398)
. ... ....+|+++.+...+++..+.. .. ......+.+....+.+++.+++||+.+||....+.+
T Consensus 157 ~-~~~-~~~~iPg~~~l~~~dlp~~~~~-~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~ 231 (481)
T PLN02992 157 T-VQR-KPLAMPGCEPVRFEDTLDAYLV-PD--EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVAR 231 (481)
T ss_pred c-cCC-CCcccCCCCccCHHHhhHhhcC-CC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccC
Confidence 0 001 1225788888877777722222 11 123444455555677899999999999998644321
Q ss_pred CceecC------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc------------c------------
Q 042709 227 PSVLPF------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL------------G------------ 270 (398)
Q Consensus 227 ~~~~~v------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~------------~------------ 270 (398)
+++++| +++|.+||+++++++||||||||...++.+++.+++. .
T Consensus 232 ~~v~~VGPl~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~ 311 (481)
T PLN02992 232 VPVYPIGPLCRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAY 311 (481)
T ss_pred CceEEecCccCCcCCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccccccc
Confidence 345555 2348899999988899999999999888888888765 1
Q ss_pred ----------------------------cee-cccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhH
Q 042709 271 ----------------------------KIV-EWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHN 321 (398)
Q Consensus 271 ----------------------------~v~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~n 321 (398)
.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 312 ~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~n 391 (481)
T PLN02992 312 FSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMN 391 (481)
T ss_pred ccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHH
Confidence 233 899999999999999999999999999999999999999999999999
Q ss_pred HHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhh
Q 042709 322 RNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND---GIKGNSLKLKEIARKILV--EGGSSFRKFDSFISQIKVL 396 (398)
Q Consensus 322 a~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~---~~~~~a~~l~~~~~~~~~--~~g~~~~~~~~~~~~~~~~ 396 (398)
|+++++++|+|+.++.. ++.+++++|.++|+++|+|+ ++|++++++++.+++|+. +||||.+++++|+++++..
T Consensus 392 a~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~~ 470 (481)
T PLN02992 392 AALLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQRF 470 (481)
T ss_pred HHHHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH
Confidence 99996338999999741 24689999999999999763 799999999999999994 5999999999999888754
No 13
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=3.7e-59 Score=437.99 Aligned_cols=360 Identities=25% Similarity=0.382 Sum_probs=270.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcC--CCCCCCCCCCCCH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIP--DGLDLQADEREDP 88 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 88 (398)
++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+. ... ...-.+.+.++| +++|++.+...++
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~-~~~~~v~~~~~p~~~glp~g~e~~~~~ 81 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLF-PHNIVFRSVTVPHVDGLPVGTETVSEI 81 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccC-CCCceEEEEECCCcCCCCCcccccccC
Confidence 57999999999999999999999999999999999999987655432 000 001137788887 6776653221111
Q ss_pred H-----HHHh-------hchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCC
Q 042709 89 H-----KLMT-------EDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPN 155 (398)
Q Consensus 89 ~-----~~~~-------~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (398)
. .+.. .+.+.++.. |||||+|. +.|+..+|+++|||++.|++++++.+..+.. + .+..
T Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~~~--- 152 (453)
T PLN02764 82 PVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GGEL--- 152 (453)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----cccC---
Confidence 1 1111 122222555 99999995 7899999999999999999999988777642 1 0100
Q ss_pred CccccccccccccCCCCC----CccCccCcCCCC--CCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC---
Q 042709 156 GFAVLNYGLISLSNEIPA----LNRNEYTWSFPT--EPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI--- 226 (398)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~----~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~--- 226 (398)
+ ..+|++|. ++.++++. +.. ...........+.+....+.+++.+++||+.++|+...+..
T Consensus 153 --~-------~~~pglp~~~v~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~ 222 (453)
T PLN02764 153 --G-------VPPPGYPSSKVLLRKQDAYT-MKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH 222 (453)
T ss_pred --C-------CCCCCCCCCcccCcHhhCcc-hhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh
Confidence 0 01255552 44455552 211 11111122333333335567889999999999998744332
Q ss_pred --CceecC-------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc----------------------
Q 042709 227 --PSVLPF-------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL---------------------- 269 (398)
Q Consensus 227 --~~~~~v-------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~---------------------- 269 (398)
+++++| +++|.+|||++++++||||||||...++.+++.+++.
T Consensus 223 ~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~ 302 (453)
T PLN02764 223 CRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTI 302 (453)
T ss_pred cCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcch
Confidence 345554 1358899999999999999999999999999999886
Q ss_pred ---------------ccee-cccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEE
Q 042709 270 ---------------GKIV-EWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGV 333 (398)
Q Consensus 270 ---------------~~v~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~ 333 (398)
|.++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.+|+|+
T Consensus 303 ~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv 382 (453)
T PLN02764 303 QEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSV 382 (453)
T ss_pred hhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEE
Confidence 2234 899999999999999999999999999999999999999999999999999975589999
Q ss_pred EecCCCCCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 042709 334 QLLPDENGIITRQEIQINVKALLKND-----GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVL 396 (398)
Q Consensus 334 ~l~~~~~~~~~~~~l~~ai~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 396 (398)
.++.++.+.+++++|+++|+++|+++ ++|+++++|++++++ +|||.+++++|++++.++
T Consensus 383 ~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 383 EVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQDL 446 (453)
T ss_pred EeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHh
Confidence 98642224689999999999999763 389999999999865 899999999999999876
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.7e-59 Score=447.77 Aligned_cols=377 Identities=24% Similarity=0.408 Sum_probs=282.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCccchHHHH--Hh-hcccccCCCCCeEEEEcCCCCCCCCCCC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHG--IDVTFVNTEFIHAKII--AS-MQGKAENSSSQIMLVSIPDGLDLQADER 85 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (398)
|+||+++|+|++||++|++.||+.|+.+| ..|||++++.+..... +. .........++++++.+|++.++.. ..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT-ED 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc-cc
Confidence 78999999999999999999999999999 8899999988754321 10 0000001123699999997764221 11
Q ss_pred CCHHHHHhhchhhc---------c----C-C-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhc
Q 042709 86 EDPHKLMTEDPQAD---------T----E-C-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAA 150 (398)
Q Consensus 86 ~~~~~~~~~~~~~~---------~----~-~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 150 (398)
..+..++..+...+ . . . ++|||+|.+++|+..+|+++|||++.|++++++.++.+.+.+.....+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~ 160 (481)
T PLN02554 81 PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEK 160 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhcccc
Confidence 12222222221111 1 1 3 389999999999999999999999999999999999888765432211
Q ss_pred cCCCCCccccccccccccCCCC-CCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEecccccccccccc-----
Q 042709 151 IIDPNGFAVLNYGLISLSNEIP-ALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACD----- 224 (398)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~----- 224 (398)
..+..+.+ +.. ....+|+++ ++...+++ ..... ..+...+.+....+.+++.+++||+.++|.....
T Consensus 161 ~~~~~~~~-~~~-~~v~iPgl~~pl~~~dlp-~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~ 233 (481)
T PLN02554 161 KYDVSELE-DSE-VELDVPSLTRPYPVKCLP-SVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGS 233 (481)
T ss_pred ccCccccC-CCC-ceeECCCCCCCCCHHHCC-CcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhc
Confidence 01100111 101 112478874 67777777 32222 1234445555566788999999999999975322
Q ss_pred --CCCceecC-----------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc----------------
Q 042709 225 --LIPSVLPF-----------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL---------------- 269 (398)
Q Consensus 225 --~~~~~~~v-----------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~---------------- 269 (398)
..|++++| ++++.+||+++++++||||||||+...+.+++.+++.
T Consensus 234 ~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~ 313 (481)
T PLN02554 234 SGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRA 313 (481)
T ss_pred ccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 23556555 1258899999988899999999998888888887775
Q ss_pred ------------------------------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchh
Q 042709 270 ------------------------------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQH 319 (398)
Q Consensus 270 ------------------------------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~ 319 (398)
+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 314 ~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~ 393 (481)
T PLN02554 314 SPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQK 393 (481)
T ss_pred cccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccch
Confidence 11347999999999999999999999999999999999999999999999
Q ss_pred hHHHh-hccceeeEEEecCC--------CCCCcCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 042709 320 HNRNY-ICDVWKIGVQLLPD--------ENGIITRQEIQINVKALLK-NDGIKGNSLKLKEIARKILVEGGSSFRKFDSF 389 (398)
Q Consensus 320 ~na~~-~~~~~g~g~~l~~~--------~~~~~~~~~l~~ai~~~l~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 389 (398)
.||++ +++ +|+|+.++.+ +.+.+++++|.++|+++|+ |++||+||+++++++++++++||||..++++|
T Consensus 394 ~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~l 472 (481)
T PLN02554 394 FNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKF 472 (481)
T ss_pred hhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 99965 556 8999999631 1246899999999999996 78999999999999999999999999999999
Q ss_pred HHHHHhh
Q 042709 390 ISQIKVL 396 (398)
Q Consensus 390 ~~~~~~~ 396 (398)
+++++.+
T Consensus 473 v~~~~~~ 479 (481)
T PLN02554 473 IQDVTKN 479 (481)
T ss_pred HHHHHhh
Confidence 9999875
No 15
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=7.2e-59 Score=446.36 Aligned_cols=375 Identities=26% Similarity=0.440 Sum_probs=274.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccc---cCCCCCeEEEEcC---CCCCCCCCC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKA---ENSSSQIMLVSIP---DGLDLQADE 84 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~ 84 (398)
+.||+++|+|+.||++|++.||+.|+.|||+|||++++.+..++++.+..+. +...-.+.+.++| +++|++...
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 5799999999999999999999999999999999999999887776553211 0001145555666 456654211
Q ss_pred CC--------CHHH----HH-------hhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhh
Q 042709 85 RE--------DPHK----LM-------TEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIP 144 (398)
Q Consensus 85 ~~--------~~~~----~~-------~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 144 (398)
.. +... +. ..+.+.+++. |||||+|.+++|+..+|+++|||++.|++++++....+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 164 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIR 164 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHH
Confidence 10 1111 11 1112222555 999999999999999999999999999999988776654322
Q ss_pred hhhhhccCCCCCccccccccccccCCCCC---CccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccc
Q 042709 145 KLLDAAIIDPNGFAVLNYGLISLSNEIPA---LNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSP 221 (398)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~ 221 (398)
... +....+ .... ...+|++|. +...+++ . ......+..++........+++.+++||+.++|.+
T Consensus 165 ~~~-----~~~~~~-~~~~-~~~~pg~p~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~ 232 (482)
T PLN03007 165 VHK-----PQKKVA-SSSE-PFVIPDLPGDIVITEEQIN-D----ADEESPMGKFMKEVRESEVKSFGVLVNSFYELESA 232 (482)
T ss_pred hcc-----cccccC-CCCc-eeeCCCCCCccccCHHhcC-C----CCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHH
Confidence 100 000000 0001 112566652 2222333 1 11122234444444456678899999999999887
Q ss_pred cccCCC-----ceecC-C----------------------cchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc----
Q 042709 222 ACDLIP-----SVLPF-D----------------------STCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL---- 269 (398)
Q Consensus 222 ~~~~~~-----~~~~v-~----------------------~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~---- 269 (398)
..+.+. ++++| + +++.+||+.++++++|||||||+.....+++.+++.
T Consensus 233 ~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~ 312 (482)
T PLN03007 233 YADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEG 312 (482)
T ss_pred HHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHH
Confidence 444432 34444 1 236899999988999999999998888888887765
Q ss_pred ---------------------------------c-ceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCc
Q 042709 270 ---------------------------------G-KIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSF 315 (398)
Q Consensus 270 ---------------------------------~-~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~ 315 (398)
+ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 313 ~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~ 392 (482)
T PLN03007 313 SGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVG 392 (482)
T ss_pred CCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccch
Confidence 1 334999999999999999999999999999999999999999999
Q ss_pred cchhhHHHhhccceeeEEEecCC-----CCCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 042709 316 ADQHHNRNYICDVWKIGVQLLPD-----ENGIITRQEIQINVKALLKND---GIKGNSLKLKEIARKILVEGGSSFRKFD 387 (398)
Q Consensus 316 ~DQ~~na~~~~~~~g~g~~l~~~-----~~~~~~~~~l~~ai~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 387 (398)
+||+.||+++++.+++|+.+..+ +...+++++|+++|+++|+|+ +||+||++|++.+++++.+||||.++++
T Consensus 393 ~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~ 472 (482)
T PLN03007 393 AEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLN 472 (482)
T ss_pred hhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999987656666665321 125689999999999999887 8999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 042709 388 SFISQIKVLR 397 (398)
Q Consensus 388 ~~~~~~~~~~ 397 (398)
+|++++++.+
T Consensus 473 ~~v~~~~~~~ 482 (482)
T PLN03007 473 KFMEELNSRK 482 (482)
T ss_pred HHHHHHHhcC
Confidence 9999998653
No 16
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.8e-59 Score=440.14 Aligned_cols=371 Identities=26% Similarity=0.421 Sum_probs=276.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcC----CCCCCCCCCCC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIP----DGLDLQADERE 86 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 86 (398)
+.||+++|+|++||++|++.||+.|+.||+.|||++++.+...+.+... ...++++++.+| +++|++.....
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~----~~~~~i~~~~lp~p~~dglp~~~~~~~ 81 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS----QLSSSITLVSFPLPSVPGLPSSAESST 81 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc----cCCCCeeEEECCCCccCCCCCCccccc
Confidence 5799999999999999999999999999999999999988766653211 112369999998 67775532222
Q ss_pred CHH----HHHhh----c----hhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCC
Q 042709 87 DPH----KLMTE----D----PQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIID 153 (398)
Q Consensus 87 ~~~----~~~~~----~----~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (398)
++. .++.. + .+.++.. ++|||+|.+++|+..+|+++|||++.|+++++..++.+.+......++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 161 (472)
T PLN02670 82 DVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLR 161 (472)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCC
Confidence 221 12211 1 1112555 999999999999999999999999999999998888866443222222111
Q ss_pred CCCccccccccccccCCC----C--CCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC-
Q 042709 154 PNGFAVLNYGLISLSNEI----P--ALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI- 226 (398)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l----~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~- 226 (398)
. .......+|+. + .+...+++ .+.............+.+....+.+++.+++||+.+||....+.+
T Consensus 162 ~------~~~~~~~~p~~~P~~~~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~ 234 (472)
T PLN02670 162 S------TAEDFTVVPPWVPFESNIVFRYHEVT-KYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLS 234 (472)
T ss_pred C------ccccccCCCCcCCCCccccccHHHhh-HHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHH
Confidence 0 00111112332 1 13344555 222211111111222334344567889999999999998744332
Q ss_pred ----CceecC----C----------------cchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc-------------
Q 042709 227 ----PSVLPF----D----------------STCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL------------- 269 (398)
Q Consensus 227 ----~~~~~v----~----------------~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~------------- 269 (398)
+++++| . +++.+||+++++++||||||||+..++.+++.+++.
T Consensus 235 ~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~ 314 (472)
T PLN02670 235 DLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVL 314 (472)
T ss_pred HhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 334444 0 247799999988899999999999999999999886
Q ss_pred -------------------------cce-ecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHH
Q 042709 270 -------------------------GKI-VEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRN 323 (398)
Q Consensus 270 -------------------------~~v-~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 323 (398)
|++ .+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 315 r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~ 394 (472)
T PLN02670 315 RNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTR 394 (472)
T ss_pred cCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHH
Confidence 133 389999999999999999999999999999999999999999999999999
Q ss_pred hhccceeeEEEecCCC-CCCcCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 042709 324 YICDVWKIGVQLLPDE-NGIITRQEIQINVKALLKND---GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVLR 397 (398)
Q Consensus 324 ~~~~~~g~g~~l~~~~-~~~~~~~~l~~ai~~~l~~~---~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 397 (398)
++++ +|+|+.++..+ ++.+++++|+++|+++|+|+ +||+||+++++.+++ .+.-..++++|++.|++++
T Consensus 395 ~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 395 LLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDELVHYLRENR 467 (472)
T ss_pred HHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHHHHHHHHhc
Confidence 9988 89999997532 24689999999999999875 799999999999997 6788899999999998875
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.5e-59 Score=438.53 Aligned_cols=367 Identities=22% Similarity=0.418 Sum_probs=272.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCC-
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHG--IDVTF--VNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQAD- 83 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (398)
|.+.||+++|+|++||++|++.||+.|+.+| +.||+ ++++.+...+.+..... ....++++|+.+|++.+....
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~~~~~~ 79 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSV-SSSFPSITFHHLPAVTPYSSSS 79 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccc-cCCCCCeEEEEcCCCCCCCCcc
Confidence 6789999999999999999999999999999 45555 55544332222211010 011236999999977642221
Q ss_pred -CCCCHHHHH----h----hchhhc----cCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhh
Q 042709 84 -EREDPHKLM----T----EDPQAD----TEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDA 149 (398)
Q Consensus 84 -~~~~~~~~~----~----~~~~~~----~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 149 (398)
...+....+ . .+.+.+ .+. ++|||+|.+++|+..+|+++|||++.|++++++.++.+.+++.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 80 TSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 111221111 1 111111 224 69999999999999999999999999999999999888775532111
Q ss_pred ccCCCCCccccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC---
Q 042709 150 AIIDPNGFAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI--- 226 (398)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~--- 226 (398)
. +....+ ......+|+++.+...+++ .+..... ......+.+....+.+++.+++||+.++|....+.+
T Consensus 160 ~--~~~~~~---~~~~v~iPg~p~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~ 231 (451)
T PLN03004 160 T--PGKNLK---DIPTVHIPGVPPMKGSDMP-KAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE 231 (451)
T ss_pred c--cccccc---cCCeecCCCCCCCChHHCc-hhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc
Confidence 0 000000 1112257888888888888 3332221 223444555555677889999999999998633221
Q ss_pred ---CceecC----------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc------------------
Q 042709 227 ---PSVLPF----------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL------------------ 269 (398)
Q Consensus 227 ---~~~~~v----------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~------------------ 269 (398)
+++++| +.+|.+||+++++++||||||||+..++.+++++++.
T Consensus 232 ~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~ 311 (451)
T PLN03004 232 LCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPE 311 (451)
T ss_pred CCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc
Confidence 355555 1237899999988999999999998888888888775
Q ss_pred -----------------------c-ceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhh
Q 042709 270 -----------------------G-KIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYI 325 (398)
Q Consensus 270 -----------------------~-~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~ 325 (398)
+ .+.+|+||.+||+|+++|+|||||||||++||+++|||||++|+++||+.||+++
T Consensus 312 ~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~ 391 (451)
T PLN03004 312 LEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMI 391 (451)
T ss_pred ccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHH
Confidence 1 2338999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHH
Q 042709 326 CDVWKIGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFR 384 (398)
Q Consensus 326 ~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 384 (398)
+++||+|+.++.++.+.+++++|+++|+++|+|++||+|+++|+++++.|+++||||.+
T Consensus 392 ~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 392 VDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 76589999997532246899999999999999999999999999999999999999864
No 18
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3.5e-58 Score=436.90 Aligned_cols=376 Identities=29% Similarity=0.458 Sum_probs=275.9
Q ss_pred cCC-CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcC-----CCCCCC
Q 042709 8 SCR-QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIP-----DGLDLQ 81 (398)
Q Consensus 8 ~m~-~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 81 (398)
+|. +.||+++|+|++||++|++.||+.|+.||+.|||++++.+...+.+...... .....++|+++| +++|++
T Consensus 4 ~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~-~~~~~i~~~~lp~p~~~dglp~~ 82 (491)
T PLN02534 4 SKAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRAR-ESGLPIRLVQIPFPCKEVGLPIG 82 (491)
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhcc-ccCCCeEEEEcCCCCccCCCCCC
Confidence 354 4799999999999999999999999999999999999998766654321100 111248999998 577765
Q ss_pred CCCCCC-----HH-HHH-------hhchhhcc--CC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhh
Q 042709 82 ADERED-----PH-KLM-------TEDPQADT--EC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPK 145 (398)
Q Consensus 82 ~~~~~~-----~~-~~~-------~~~~~~~~--~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 145 (398)
.....+ +. .+. ..+.+.++ .. |+|||+|.+++|+..+|+++|||++.|++++++....+..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~ 162 (491)
T PLN02534 83 CENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL 162 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH
Confidence 322121 11 111 11222222 35 8999999999999999999999999999999988776543211
Q ss_pred hhhhccCCCCCccccccccccccCCCCC---CccCccCcCCCCCCchhhHHHHHHHHHHH-hhhccceEEeccccccccc
Q 042709 146 LLDAAIIDPNGFAVLNYGLISLSNEIPA---LNRNEYTWSFPTEPNIQKIFFGSTCATVQ-AFKISKWVLNNSVYELDSP 221 (398)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~t~~~le~~ 221 (398)
....... + . ......+|+++. +...+++..+.... .. +.+..... ....++.+++||+.+||+.
T Consensus 163 ~~~~~~~-----~-~-~~~~~~iPg~p~~~~l~~~dlp~~~~~~~-~~----~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (491)
T PLN02534 163 HNAHLSV-----S-S-DSEPFVVPGMPQSIEITRAQLPGAFVSLP-DL----DDVRNKMREAESTAFGVVVNSFNELEHG 230 (491)
T ss_pred hcccccC-----C-C-CCceeecCCCCccccccHHHCChhhcCcc-cH----HHHHHHHHhhcccCCEEEEecHHHhhHH
Confidence 1110000 0 1 111124677763 56666662221111 11 12222222 2245779999999999975
Q ss_pred cccC-----CCceecC-----------------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc----
Q 042709 222 ACDL-----IPSVLPF-----------------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL---- 269 (398)
Q Consensus 222 ~~~~-----~~~~~~v-----------------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~---- 269 (398)
..+. .+++++| +++|.+||+++++++||||||||.....++++.+++.
T Consensus 231 ~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~ 310 (491)
T PLN02534 231 CAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEA 310 (491)
T ss_pred HHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 3322 1334443 1237789999998999999999999888888887765
Q ss_pred ----------------------------------cce-ecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccC
Q 042709 270 ----------------------------------GKI-VEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPS 314 (398)
Q Consensus 270 ----------------------------------~~v-~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~ 314 (398)
+.+ .+|+||..||+|+++++|||||||||++||+++|||||++|+
T Consensus 311 ~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 311 SKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred CCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccc
Confidence 223 489999999999999999999999999999999999999999
Q ss_pred ccchhhHHHhhccceeeEEEecCC-------CC--C-CcCHHHHHHHHHHHhc---C--HHHHHHHHHHHHHHHHHHhcC
Q 042709 315 FADQHHNRNYICDVWKIGVQLLPD-------EN--G-IITRQEIQINVKALLK---N--DGIKGNSLKLKEIARKILVEG 379 (398)
Q Consensus 315 ~~DQ~~na~~~~~~~g~g~~l~~~-------~~--~-~~~~~~l~~ai~~~l~---~--~~~~~~a~~l~~~~~~~~~~~ 379 (398)
++||+.||+++++.||+|+++..+ ++ + .+++++|.++|+++|+ + +++|+||++|++++++++.+|
T Consensus 391 ~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~G 470 (491)
T PLN02534 391 FAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELG 470 (491)
T ss_pred cccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998779999988521 11 1 4899999999999996 2 479999999999999999999
Q ss_pred CchHHHHHHHHHHHHhh
Q 042709 380 GSSFRKFDSFISQIKVL 396 (398)
Q Consensus 380 g~~~~~~~~~~~~~~~~ 396 (398)
|||.+++++|++++.+.
T Consensus 471 GSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 471 GSSHINLSILIQDVLKQ 487 (491)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 99999999999999754
No 19
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=6.9e-58 Score=430.65 Aligned_cols=377 Identities=23% Similarity=0.357 Sum_probs=280.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCccchHHHH-HhhcccccCCCCCeEEEEcCCCCCCCC-C-C
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEH-GIDVTFVNTEFIHAKII-ASMQGKAENSSSQIMLVSIPDGLDLQA-D-E 84 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 84 (398)
|++.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+. +...... ....+++++.+|.+..++- . .
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~~~l~~~~ 79 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAA-AARTTCQITEIPSVDVDNLVEPD 79 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccc-cCCCceEEEECCCCccccCCCCC
Confidence 678899999999999999999999999987 99999999887664431 1100000 0112599999985432220 0 1
Q ss_pred CCCHHHHHhhc-------hhhcc--CC-ccEEEecCcchhHHHHHHHhCCc-eEEEcCCcHHHHHHHhhhhhhhhhccCC
Q 042709 85 REDPHKLMTED-------PQADT--EC-TACVIADISVGWALEVAEAIGIA-RAAFVPFGPGSLALSLHIPKLLDAAIID 153 (398)
Q Consensus 85 ~~~~~~~~~~~-------~~~~~--~~-pD~vi~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (398)
.+....+...+ .+.++ .. |+|||+|.+++|+..+|+++||| .+.|++++++....+.+++... +...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~--~~~~ 157 (470)
T PLN03015 80 ATIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD--TVVE 157 (470)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh--cccc
Confidence 11111222211 11112 24 89999999999999999999999 5888888887776776655421 1111
Q ss_pred CCCccccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC-------
Q 042709 154 PNGFAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI------- 226 (398)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~------- 226 (398)
.. .. ..... ..+|+++.+..++++..+.. ... . ....+.+......+++.+++||+.+||+...+.+
T Consensus 158 ~~-~~-~~~~~-~~vPg~p~l~~~dlp~~~~~-~~~-~-~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~ 231 (470)
T PLN03015 158 GE-YV-DIKEP-LKIPGCKPVGPKELMETMLD-RSD-Q-QYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELN 231 (470)
T ss_pred cc-cC-CCCCe-eeCCCCCCCChHHCCHhhcC-CCc-H-HHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccc
Confidence 10 00 00112 25899988888888832322 211 1 1233334455678899999999999998643222
Q ss_pred ----CceecC------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc------------c--------
Q 042709 227 ----PSVLPF------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL------------G-------- 270 (398)
Q Consensus 227 ----~~~~~v------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~------------~-------- 270 (398)
+++++| ++++.+||+++++++||||||||...++.+++.+++. .
T Consensus 232 ~~~~~~v~~VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~ 311 (470)
T PLN03015 232 RVMKVPVYPIGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLG 311 (470)
T ss_pred cccCCceEEecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccc
Confidence 446655 2358899999988999999999999999988888775 1
Q ss_pred -------------------------ce-ecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHh
Q 042709 271 -------------------------KI-VEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNY 324 (398)
Q Consensus 271 -------------------------~v-~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~ 324 (398)
++ .+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 312 ~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~ 391 (470)
T PLN03015 312 ASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATL 391 (470)
T ss_pred cccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHH
Confidence 23 3899999999999999999999999999999999999999999999999999
Q ss_pred hccceeeEEEecC-CCCCCcCHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 325 ICDVWKIGVQLLP-DENGIITRQEIQINVKALLK-----NDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 325 ~~~~~g~g~~l~~-~~~~~~~~~~l~~ai~~~l~-----~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
+++.||+|+++.. ++.+.+++++|+++|+++|+ .+++|+||++|++++++|+++||||.+++++|+++++
T Consensus 392 ~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 392 LTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Confidence 9666999999952 11247899999999999994 2379999999999999999999999999999998863
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.7e-58 Score=437.96 Aligned_cols=378 Identities=25% Similarity=0.389 Sum_probs=275.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEeCccchH-HHHHhhcccccCCCCCeEEEEcCCCCCCCCCC
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGI---DVTFVNTEFIHA-KIIASMQGKAENSSSQIMLVSIPDGLDLQADE 84 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh---~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (398)
|++.||+++|+|++||++|++.||+.|+.+|. .||+++++.... .......... ...++++|+.+|++..+....
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~p~~~~ 79 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLI-ASEPRIRLVTLPEVQDPPPME 79 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcc-cCCCCeEEEECCCCCCCcccc
Confidence 67899999999999999999999999999993 567777554321 1111110000 112369999999654221100
Q ss_pred --CC----CHHHHHhhc----hhhc----c-----CC--ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhh
Q 042709 85 --RE----DPHKLMTED----PQAD----T-----EC--TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHI 143 (398)
Q Consensus 85 --~~----~~~~~~~~~----~~~~----~-----~~--pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 143 (398)
.. .+..+...+ .+.+ . +. ++|||+|.+++|+..+|+++|||++.|++++++.++.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~ 159 (475)
T PLN02167 80 LFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYL 159 (475)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHH
Confidence 11 111111111 1111 1 12 49999999999999999999999999999999988887765
Q ss_pred hhhhhhccCCCCCccc-cccccccccCCC-CCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccc
Q 042709 144 PKLLDAAIIDPNGFAV-LNYGLISLSNEI-PALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSP 221 (398)
Q Consensus 144 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~ 221 (398)
+..... ... ..+. ..... ..+||+ +.+...+++ ....... ..+.+.+......+++.+++||+.++|+.
T Consensus 160 ~~~~~~--~~~-~~~~~~~~~~-~~iPgl~~~l~~~dlp-~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (475)
T PLN02167 160 PERHRK--TAS-EFDLSSGEEE-LPIPGFVNSVPTKVLP-PGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPN 230 (475)
T ss_pred HHhccc--ccc-ccccCCCCCe-eECCCCCCCCChhhCc-hhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHH
Confidence 532111 100 0000 00111 247887 457777776 2221111 12233344455678999999999999986
Q ss_pred cccC-------CCceecC-------C-----------cchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc-------
Q 042709 222 ACDL-------IPSVLPF-------D-----------STCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL------- 269 (398)
Q Consensus 222 ~~~~-------~~~~~~v-------~-----------~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~------- 269 (398)
..+. .|++++| + +++.+||+.++.++||||||||+...+.+++.+++.
T Consensus 231 ~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~ 310 (475)
T PLN02167 231 AFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGC 310 (475)
T ss_pred HHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 4432 2566665 1 347899999988899999999998888888888875
Q ss_pred -------------------------------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccch
Q 042709 270 -------------------------------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQ 318 (398)
Q Consensus 270 -------------------------------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ 318 (398)
+++++|+||.+||+|+++|+|||||||||++||+++|||||++|+++||
T Consensus 311 ~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ 390 (475)
T PLN02167 311 RFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQ 390 (475)
T ss_pred cEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 1367999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhccceeeEEEecCC---C-CCCcCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 042709 319 HHNRNYICDVWKIGVQLLPD---E-NGIITRQEIQINVKALLKND-GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393 (398)
Q Consensus 319 ~~na~~~~~~~g~g~~l~~~---~-~~~~~~~~l~~ai~~~l~~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 393 (398)
+.||+++.+.||+|+.+..+ + +..+++++|+++|+++|+++ .||+|++++++.+++++++||||.+++++|++++
T Consensus 391 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i 470 (475)
T PLN02167 391 QLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDL 470 (475)
T ss_pred hhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99998754338999999642 1 13579999999999999765 8999999999999999999999999999999998
Q ss_pred Hhh
Q 042709 394 KVL 396 (398)
Q Consensus 394 ~~~ 396 (398)
++-
T Consensus 471 ~~~ 473 (475)
T PLN02167 471 LGD 473 (475)
T ss_pred Hhc
Confidence 763
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-57 Score=430.07 Aligned_cols=353 Identities=24% Similarity=0.397 Sum_probs=262.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcC----CCCCCCCCCCC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIP----DGLDLQADERE 86 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 86 (398)
+.||+++|+|++||++|++.||+.|+++|++|||++++.+...+.+.+ ...+++.|..++ +++|++.....
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~-----~~~~~i~~~~i~lP~~dGLP~g~e~~~ 78 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN-----LFPDSIVFEPLTLPPVDGLPFGAETAS 78 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc-----cCCCceEEEEecCCCcCCCCCcccccc
Confidence 679999999999999999999999999999999999998877665442 112257885554 56766532221
Q ss_pred CHH-----HHH-------hhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCC
Q 042709 87 DPH-----KLM-------TEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIID 153 (398)
Q Consensus 87 ~~~-----~~~-------~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (398)
++. .+. ..+.+.+++. |||||+|. ++|+..+|+++|||++.|+++++...+.+.+. . .+ .
T Consensus 79 ~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~-~--~~--~- 151 (446)
T PLN00414 79 DLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAP-R--AE--L- 151 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCc-H--hh--c-
Confidence 221 111 1122222455 99999995 78999999999999999999999888776551 1 00 0
Q ss_pred CCCccccccccccccCCCCC----CccCccCc-CCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCC--
Q 042709 154 PNGFAVLNYGLISLSNEIPA----LNRNEYTW-SFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLI-- 226 (398)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~----~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~-- 226 (398)
+. .+|++|. +...+... .++.. ....+.+..+...+++.+++||+.++|....+.+
T Consensus 152 --~~---------~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 214 (446)
T PLN00414 152 --GF---------PPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIER 214 (446)
T ss_pred --CC---------CCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHH
Confidence 00 1234432 11111110 11110 1123333444567899999999999998754432
Q ss_pred ---CceecC---------------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc-------------------
Q 042709 227 ---PSVLPF---------------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL------------------- 269 (398)
Q Consensus 227 ---~~~~~v---------------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~------------------- 269 (398)
+++++| +++|.+|||.+++++||||||||......+++.+++.
T Consensus 215 ~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~ 294 (446)
T PLN00414 215 QCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS 294 (446)
T ss_pred hcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc
Confidence 345544 1247899999999999999999999999999998875
Q ss_pred ------------------ccee-cccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhcccee
Q 042709 270 ------------------GKIV-EWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWK 330 (398)
Q Consensus 270 ------------------~~v~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g 330 (398)
++++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.+|
T Consensus 295 ~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g 374 (446)
T PLN00414 295 STVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELE 374 (446)
T ss_pred ccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhC
Confidence 3454 899999999999999999999999999999999999999999999999999975589
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 042709 331 IGVQLLPDENGIITRQEIQINVKALLKND-----GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVL 396 (398)
Q Consensus 331 ~g~~l~~~~~~~~~~~~l~~ai~~~l~~~-----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 396 (398)
+|+.++.++++.+++++|+++|+++|+|+ ++|++++++++.+.+ +||+| ..+++|+++++..
T Consensus 375 ~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~~~~ 441 (446)
T PLN00414 375 VSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEALENE 441 (446)
T ss_pred eEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHHh
Confidence 99999753224689999999999999763 499999999999754 46634 3389999998654
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=5.8e-45 Score=350.63 Aligned_cols=353 Identities=16% Similarity=0.163 Sum_probs=236.0
Q ss_pred CCCEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCC-------C
Q 042709 10 RQPHVLVI-PFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDL-------Q 81 (398)
Q Consensus 10 ~~~~il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 81 (398)
.+.||+.+ |.++.||+.-+-.|+++|++|||+||++++...... .. ....+++...++...+. .
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~-~~-------~~~~~~~~i~~~~~~~~~~~~~~~~ 90 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYY-AS-------HLCGNITEIDASLSVEYFKKLVKSS 90 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccccc-cc-------CCCCCEEEEEcCCChHHHHHHHhhh
Confidence 46789855 889999999999999999999999999988542110 00 00125665555311100 0
Q ss_pred CC-CC-C---CHHH----HHhh-------------chhhcc--CC-ccEEEecCcchhHHHHHHHh-CCceEEEcCCcHH
Q 042709 82 AD-ER-E---DPHK----LMTE-------------DPQADT--EC-TACVIADISVGWALEVAEAI-GIARAAFVPFGPG 135 (398)
Q Consensus 82 ~~-~~-~---~~~~----~~~~-------------~~~~~~--~~-pD~vi~D~~~~~~~~~A~~l-giP~v~~~~~~~~ 135 (398)
.. .. . +... .... +.+.++ +. +|++|+|.+..++..+|+.+ ++|.|.++++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 91 AVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 00 00 0 0000 0001 011114 56 99999998888999999999 9999988886554
Q ss_pred HHHHHhhhhhhhhhccCCCCCccccccccccccCCCCCCccCccCc-----CC---------CC--CCchhhHHHHHHHH
Q 042709 136 SLALSLHIPKLLDAAIIDPNGFAVLNYGLISLSNEIPALNRNEYTW-----SF---------PT--EPNIQKIFFGSTCA 199 (398)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-----~~---------~~--~~~~~~~~~~~~~~ 199 (398)
....... + |.| .+..++|....-....+.. .+ .. ....+....+.+..
T Consensus 171 ~~~~~~~-------g-----g~p----~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~ 234 (507)
T PHA03392 171 AENFETM-------G-----AVS----RHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGP 234 (507)
T ss_pred hhHHHhh-------c-----cCC----CCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCC
Confidence 3221110 0 011 1112233221110001100 00 00 00011111111111
Q ss_pred ----HHHhhhccceEEeccccccccccccCCCceecC-------------CcchHHhhhcCCCCcEEEEEeCCccc---C
Q 042709 200 ----TVQAFKISKWVLNNSVYELDSPACDLIPSVLPF-------------DSTCLSWRDKQAIGSVTYVAFGRFSI---L 259 (398)
Q Consensus 200 ----~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~v-------------~~~~~~~l~~~~~~~vVyvs~Gs~~~---~ 259 (398)
..+..++.+++++|+.+.+|+| ++++|++.+| ++++.+|++..+ +++|||||||+.. .
T Consensus 235 ~~~~~~~l~~~~~l~lvns~~~~d~~-rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~ 312 (507)
T PHA03392 235 DTPTIRELRNRVQLLFVNVHPVFDNN-RPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDM 312 (507)
T ss_pred CCCCHHHHHhCCcEEEEecCccccCC-CCCCCCeeeecccccCCCCCCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCC
Confidence 1223367789999999999999 8999998776 345778888765 4699999999864 3
Q ss_pred CHHHHHHhhc-------------------------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccC
Q 042709 260 GQEQLEQLAL-------------------------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPS 314 (398)
Q Consensus 260 ~~~~~~~~~~-------------------------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~ 314 (398)
..+.++.++. +++.+|+||.+||+|+.+++||||||+||++||+++|||||++|+
T Consensus 313 ~~~~~~~~l~a~~~l~~~viw~~~~~~~~~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~ 392 (507)
T PHA03392 313 DNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPM 392 (507)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCCcCcccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCC
Confidence 4555555443 467799999999999999999999999999999999999999999
Q ss_pred ccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 315 FADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 315 ~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
++||+.||+|+++ +|+|+.++. ..++.++|.++|+++++|++||+||+++++.+++. .-+..+.+..-++.+.
T Consensus 393 ~~DQ~~Na~rv~~-~G~G~~l~~---~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~---p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 393 MGDQFYNTNKYVE-LGIGRALDT---VTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQ---PMTPLHKAIWYTEHVI 465 (507)
T ss_pred CccHHHHHHHHHH-cCcEEEecc---CCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 9999999999999 699999987 67899999999999999999999999999999973 2223334444455544
Q ss_pred h
Q 042709 395 V 395 (398)
Q Consensus 395 ~ 395 (398)
+
T Consensus 466 r 466 (507)
T PHA03392 466 R 466 (507)
T ss_pred h
Confidence 3
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.6e-47 Score=374.50 Aligned_cols=333 Identities=26% Similarity=0.297 Sum_probs=198.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCC--CCC---
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADE--RED--- 87 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--- 87 (398)
|||++|+ +.||+.++..|+++|++|||+||++++.... .+... ....+++..++.+.+..... ..+
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS-------KPSNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-------------S-CCEEEE-----TT------TTHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc-------cccceeeEEEcCCcchHHHhhhhHHHHH
Confidence 6888885 7799999999999999999999999985432 22211 12356777776554433211 010
Q ss_pred -----------HHHHHhhc---hh----hc-------------cCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHH
Q 042709 88 -----------PHKLMTED---PQ----AD-------------TEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPG 135 (398)
Q Consensus 88 -----------~~~~~~~~---~~----~~-------------~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 135 (398)
....+... .+ .+ ++. +|++|+|.+..|+..+|+.+|+|.+.+.+..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~ 152 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPM 152 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSC
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEeccccc
Confidence 00011000 00 00 335 899999999889999999999999875543321
Q ss_pred HHHHHhhhhhhhhhccCCCCCccccccccccccCCCCCCccCccCcCC-CCCCch---hhHHHHHHH-------------
Q 042709 136 SLALSLHIPKLLDAAIIDPNGFAVLNYGLISLSNEIPALNRNEYTWSF-PTEPNI---QKIFFGSTC------------- 198 (398)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~~~~~---~~~~~~~~~------------- 198 (398)
.... ....+.| ....++|....-....+.... ..+... .....+.+.
T Consensus 153 ~~~~------------~~~~g~p----~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (500)
T PF00201_consen 153 YDLS------------SFSGGVP----SPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGF 216 (500)
T ss_dssp SCCT------------CCTSCCC----TSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-
T ss_pred chhh------------hhccCCC----CChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhccc
Confidence 1000 0000111 111122211100000111000 000000 000001000
Q ss_pred --HHHHhhhccceEEeccccccccccccCCCceecC-----------CcchHHhhhcCCCCcEEEEEeCCcccCCHHH-H
Q 042709 199 --ATVQAFKISKWVLNNSVYELDSPACDLIPSVLPF-----------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQ-L 264 (398)
Q Consensus 199 --~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~v-----------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~-~ 264 (398)
...+.+.+.+++++|+.+.+++| ++.+|++.+| ++++..|++...++++|||||||.+...++. .
T Consensus 217 ~~~~~~~~~~~~l~l~ns~~~ld~p-rp~~p~v~~vGgl~~~~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~ 295 (500)
T PF00201_consen 217 PFSFRELLSNASLVLINSHPSLDFP-RPLLPNVVEVGGLHIKPAKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKL 295 (500)
T ss_dssp GGGCHHHHHHHHHCCSSTEEE-----HHHHCTSTTGCGC-S----TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHH
T ss_pred ccccHHHHHHHHHHhhhccccCcCC-cchhhcccccCccccccccccccccchhhhccCCCCEEEEecCcccchhHHHHH
Confidence 01223456788999999999999 8999998877 3457788887556789999999998655554 5
Q ss_pred HHhhc------------------------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhh
Q 042709 265 EQLAL------------------------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHH 320 (398)
Q Consensus 265 ~~~~~------------------------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~ 320 (398)
+.++. +++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.
T Consensus 296 ~~~~~~~~~~~~~~iW~~~~~~~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~ 375 (500)
T PF00201_consen 296 KEIAEAFENLPQRFIWKYEGEPPENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPR 375 (500)
T ss_dssp HHHHHHHHCSTTEEEEEETCSHGCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHH
T ss_pred HHHHHHHhhCCCcccccccccccccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCc
Confidence 55554 568899999999999999999999999999999999999999999999999
Q ss_pred HHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 042709 321 NRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLKLKEIARKI 375 (398)
Q Consensus 321 na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~ 375 (398)
||+++++ .|+|+.++. ..+|.++|.++|+++|+|++|++||+++++.+++.
T Consensus 376 na~~~~~-~G~g~~l~~---~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 376 NAARVEE-KGVGVVLDK---NDLTEEELRAAIREVLENPSYKENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHHHH-TTSEEEEGG---GC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT--
T ss_pred cceEEEE-EeeEEEEEe---cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 9999999 599999987 78999999999999999999999999999999874
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=7.5e-41 Score=317.46 Aligned_cols=317 Identities=18% Similarity=0.186 Sum_probs=219.6
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCC----CCCHHHHH
Q 042709 17 IPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADE----REDPHKLM 92 (398)
Q Consensus 17 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 92 (398)
+.+|+.||++|++.||++|++|||+|+|++++.+.+.+++. |+.|.+++......... ..++..+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~----------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA----------GAEFVLYGSALPPPDNPPENTEEEPIDII 70 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc----------CCEEEecCCcCccccccccccCcchHHHH
Confidence 35799999999999999999999999999999999999887 68888887654331101 02222222
Q ss_pred hh-----------chhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCCCcccc
Q 042709 93 TE-----------DPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNGFAVL 160 (398)
Q Consensus 93 ~~-----------~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (398)
.. +.+.++.. ||+||+|.+++++..+|+.+|||+|.+++.+..... ++... .|
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~----~~~~~---------~~-- 135 (392)
T TIGR01426 71 EKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE----FEEMV---------SP-- 135 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc----ccccc---------cc--
Confidence 11 11222556 999999999889999999999999988654321100 00000 00
Q ss_pred ccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHH-------Hh--hhccceEEeccccccccccccCCCceec
Q 042709 161 NYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATV-------QA--FKISKWVLNNSVYELDSPACDLIPSVLP 231 (398)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~l~~t~~~le~~~~~~~~~~~~ 231 (398)
..+.+.. ........ .........+ +.+.. .. ....+..+..+.+.|+++..++++++.+
T Consensus 136 ------~~~~~~~--~~~~~~~~--~~~~~~~~~~-~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 204 (392)
T TIGR01426 136 ------AGEGSAE--EGAIAERG--LAEYVARLSA-LLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTF 204 (392)
T ss_pred ------cchhhhh--hhccccch--hHHHHHHHHH-HHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEE
Confidence 0000000 00000000 0000000000 11100 00 1233346777777888764455667766
Q ss_pred C------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc----------------------------cceecccC
Q 042709 232 F------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL----------------------------GKIVEWAP 277 (398)
Q Consensus 232 v------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~----------------------------~~v~~~vp 277 (398)
+ +++...|+...+++++|||||||+.......+..++. +.+.+|+|
T Consensus 205 ~Gp~~~~~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p 284 (392)
T TIGR01426 205 VGPCIGDRKEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVP 284 (392)
T ss_pred ECCCCCCccccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCC
Confidence 6 2234568877777889999999986555444443332 44668999
Q ss_pred cccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhc
Q 042709 278 QENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLK 357 (398)
Q Consensus 278 q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~ 357 (398)
|.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+++++ +|+|+.+.. ..+++++|.++|+++|+
T Consensus 285 ~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~---~~~~~~~l~~ai~~~l~ 358 (392)
T TIGR01426 285 QLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPP---EEVTAEKLREAVLAVLS 358 (392)
T ss_pred HHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEecc---ccCCHHHHHHHHHHHhc
Confidence 9999999998 99999999999999999999999999999999999999 699999975 67899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 042709 358 NDGIKGNSLKLKEIARKI 375 (398)
Q Consensus 358 ~~~~~~~a~~l~~~~~~~ 375 (398)
|++|+++++++++.+++.
T Consensus 359 ~~~~~~~~~~l~~~~~~~ 376 (392)
T TIGR01426 359 DPRYAERLRKMRAEIREA 376 (392)
T ss_pred CHHHHHHHHHHHHHHHHc
Confidence 999999999999999873
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.2e-40 Score=315.57 Aligned_cols=315 Identities=19% Similarity=0.146 Sum_probs=204.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCC---C----
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQAD---E---- 84 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---- 84 (398)
|||+|+++|+.||++|+++||++|++|||+|+|++++.+...+++. |++|.++++..+.... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~----------G~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA----------GLEFVPVGGDPDELLASPERNAGL 70 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc----------CCceeeCCCCHHHHHhhhhhcccc
Confidence 6999999999999999999999999999999999999999888876 6888888754322110 0
Q ss_pred ----CCCHHHH-----------HhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhh
Q 042709 85 ----REDPHKL-----------MTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLD 148 (398)
Q Consensus 85 ----~~~~~~~-----------~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 148 (398)
....... +..+.+.+++. ||+||+|.+.+++..+|+++|||++.+++++........+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~------ 144 (401)
T cd03784 71 LLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPP------ 144 (401)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCC------
Confidence 0011111 11111111446 9999999988899999999999999998876432110000
Q ss_pred hccCCCCCccccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhh---------ccceEEeccccccc
Q 042709 149 AAIIDPNGFAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFK---------ISKWVLNNSVYELD 219 (398)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~t~~~le 219 (398)
. . .... .... ...............+.+....+. ..+..+....+.+.
T Consensus 145 ----------------~-~----~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~ 201 (401)
T cd03784 145 ----------------P-L----GRAN-LRLY-ALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVL 201 (401)
T ss_pred ----------------c-c----chHH-HHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccC
Confidence 0 0 0000 0000 000000000000001111111110 11222333333333
Q ss_pred cccccCCCcee----cC---------CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHH-Hhhc----------------
Q 042709 220 SPACDLIPSVL----PF---------DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLE-QLAL---------------- 269 (398)
Q Consensus 220 ~~~~~~~~~~~----~v---------~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~-~~~~---------------- 269 (398)
++..++.++.. +. ++++..|++. ++++|||||||+.....+.+. .+..
T Consensus 202 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~ 279 (401)
T cd03784 202 PPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWG 279 (401)
T ss_pred CCCCCccccCcEeCCCCCCCCCCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCc
Confidence 32222222211 11 3345566655 467999999998764443332 2221
Q ss_pred ----------cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCC
Q 042709 270 ----------GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDE 339 (398)
Q Consensus 270 ----------~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~ 339 (398)
+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||+.||+++++ +|+|+.++.
T Consensus 280 ~~~~~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~-~G~g~~l~~-- 354 (401)
T cd03784 280 GLGAEDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE-LGAGPALDP-- 354 (401)
T ss_pred cccccCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH-CCCCCCCCc--
Confidence 456699999999999888 99999999999999999999999999999999999999 699999976
Q ss_pred CCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 042709 340 NGIITRQEIQINVKALLKNDGIKGNSLKLKEIARK 374 (398)
Q Consensus 340 ~~~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~ 374 (398)
..+++++|.++|+++++++ ++++++++++.+++
T Consensus 355 -~~~~~~~l~~al~~~l~~~-~~~~~~~~~~~~~~ 387 (401)
T cd03784 355 -RELTAERLAAALRRLLDPP-SRRRAAALLRRIRE 387 (401)
T ss_pred -ccCCHHHHHHHHHHHhCHH-HHHHHHHHHHHHHh
Confidence 4589999999999999865 56667777777754
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-39 Score=305.32 Aligned_cols=345 Identities=19% Similarity=0.194 Sum_probs=208.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCC-CC-CCC----
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLD-LQ-ADE---- 84 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~---- 84 (398)
+|||+++..|+.||++|+++||++|.++||+|+|++++.+.+.+++. |+.|..++.... .. ...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a----------g~~f~~~~~~~~~~~~~~~~~~~ 70 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA----------GLAFVAYPIRDSELATEDGKFAG 70 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh----------CcceeeccccCChhhhhhhhhhc
Confidence 48999999999999999999999999999999999999999999988 466666653211 11 000
Q ss_pred CC----CHHHHHhhc---hhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHh-hhhhhhhhccCCCC
Q 042709 85 RE----DPHKLMTED---PQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSL-HIPKLLDAAIIDPN 155 (398)
Q Consensus 85 ~~----~~~~~~~~~---~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 155 (398)
.. ....+.... .+.+.+. ||+++.|...+.+ .++...++|++.......+...... +.+.....+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 144 (406)
T COG1819 71 VKSFRRLLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAG----- 144 (406)
T ss_pred cchhHHHhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccc-----
Confidence 11 111111111 2222555 9999999876655 8888999998875544332211111 000000000
Q ss_pred CccccccccccccCCCCCCccCccCcCCCCCCchhhHHHH--HHHH-HHHhhhccc-eEEeccccccccccccCCCcee-
Q 042709 156 GFAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFG--STCA-TVQAFKISK-WVLNNSVYELDSPACDLIPSVL- 230 (398)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-~~l~~t~~~le~~~~~~~~~~~- 230 (398)
.......+-.+...........+......+.... ...+ ....+.... ..+.-....+.+. ...|.+.
T Consensus 145 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~ 216 (406)
T COG1819 145 ------KLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPG--DRLPFIGP 216 (406)
T ss_pred ------cccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCC--CCCCCCcC
Confidence 0000000000000000000000000000000000 0000 000111111 1111111111110 0111111
Q ss_pred c---C----CcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc--------------------------cceecccC
Q 042709 231 P---F----DSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL--------------------------GKIVEWAP 277 (398)
Q Consensus 231 ~---v----~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~--------------------------~~v~~~vp 277 (398)
+ . ..+...| ...++++||+||||.... .+.+..+.. +++.+|+|
T Consensus 217 ~~~~~~~~~~~~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~~~~~~~p~n~~v~~~~p 293 (406)
T COG1819 217 YIGPLLGEAANELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVP 293 (406)
T ss_pred ccccccccccccCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccccccccccCCCceEEecCCC
Confidence 1 1 2223334 334567999999998754 332222222 56789999
Q ss_pred cccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhc
Q 042709 278 QENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLK 357 (398)
Q Consensus 278 q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~ 357 (398)
|.++|+++++ ||||||+||++|||++|||+|++|...||+.||.|+++ +|+|+.++. ..++.+.|+++|+++|+
T Consensus 294 ~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~---~~l~~~~l~~av~~vL~ 367 (406)
T COG1819 294 QLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPF---EELTEERLRAAVNEVLA 367 (406)
T ss_pred HHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCc---ccCCHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999999999999999999 799999987 68999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 042709 358 NDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393 (398)
Q Consensus 358 ~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 393 (398)
|+.|+++++++++.++.+ +| ...+.+.++.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~ 398 (406)
T COG1819 368 DDSYRRAAERLAEEFKEE---DG--PAKAADLLEEF 398 (406)
T ss_pred CHHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHH
Confidence 999999999999999985 55 34444444443
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.6e-37 Score=300.74 Aligned_cols=354 Identities=28% Similarity=0.387 Sum_probs=222.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccc---cCCCCCeEEEEcCCCCCCCCCCC-C
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKA---ENSSSQIMLVSIPDGLDLQADER-E 86 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~ 86 (398)
+.+++++++|+.||++|++.+|+.|+++||+||++++.......... .... ........+...+++++...... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 57888999999999999999999999999999999998776554321 0000 00001122222222333322110 0
Q ss_pred CH----HHHHhh----chh---hc---cCC-ccEEEecCcchhHHHHHHHhC-CceEEEcCCcHHHHHHHhhhhhhhhhc
Q 042709 87 DP----HKLMTE----DPQ---AD---TEC-TACVIADISVGWALEVAEAIG-IARAAFVPFGPGSLALSLHIPKLLDAA 150 (398)
Q Consensus 87 ~~----~~~~~~----~~~---~~---~~~-pD~vi~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~~ 150 (398)
.. ..+... +.+ .+ ... +|++|+|.+..|...+|.... ++..++.+..........+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~---- 159 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS---- 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc----
Confidence 01 111110 001 00 445 999999998778887887775 99888888877665443321110
Q ss_pred cCCCCCccccccccccccCCCCCCccCccCcCCCC--CC-chhhHHHHHHH-------HHHHhhhccceEEecccccccc
Q 042709 151 IIDPNGFAVLNYGLISLSNEIPALNRNEYTWSFPT--EP-NIQKIFFGSTC-------ATVQAFKISKWVLNNSVYELDS 220 (398)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~--~~-~~~~~~~~~~~-------~~~~~~~~~~~~l~~t~~~le~ 220 (398)
..+....+ .............++....++..... .. ........... .....+.+++...+|+.+.++.
T Consensus 160 ~~p~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~ 238 (496)
T KOG1192|consen 160 YVPSPFSL-SSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDF 238 (496)
T ss_pred ccCcccCc-cccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCC
Confidence 00000000 00000000000000100001100000 00 00000000000 0012235666888888888888
Q ss_pred ccccCCCceecC-------C----cchHHhhhcCCCC--cEEEEEeCCcc---cCCHHHHHHhhc---------------
Q 042709 221 PACDLIPSVLPF-------D----STCLSWRDKQAIG--SVTYVAFGRFS---ILGQEQLEQLAL--------------- 269 (398)
Q Consensus 221 ~~~~~~~~~~~v-------~----~~~~~~l~~~~~~--~vVyvs~Gs~~---~~~~~~~~~~~~--------------- 269 (398)
+.++..+++++| . +.+.+|++..+.. ++|||||||++ .+..++..+++.
T Consensus 239 ~~~~~~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~ 318 (496)
T KOG1192|consen 239 EPRPLLPKVIPIGPLHVKDSKQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYR 318 (496)
T ss_pred CCCCCCCCceEECcEEecCccccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEec
Confidence 547778888887 1 1467898888765 89999999998 677777777664
Q ss_pred ------------c----cee--cccCcccc-cCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhcccee
Q 042709 270 ------------G----KIV--EWAPQEND-LGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWK 330 (398)
Q Consensus 270 ------------~----~v~--~~vpq~~l-L~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g 330 (398)
. .+. +|+||.++ |.|+++++|||||||||++|++++|||||++|+++||+.||++++++++
T Consensus 319 ~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~ 398 (496)
T KOG1192|consen 319 PDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGG 398 (496)
T ss_pred CCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCC
Confidence 1 133 59999999 5999999999999999999999999999999999999999999999755
Q ss_pred eEEEecCCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 042709 331 IGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLKLKEIARK 374 (398)
Q Consensus 331 ~g~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~ 374 (398)
+++... ..++.+.+.+++.+++++++|+++++++++.+++
T Consensus 399 ~~v~~~----~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 399 GGVLDK----RDLVSEELLEAIKEILENEEYKEAAKRLSEILRD 438 (496)
T ss_pred EEEEeh----hhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHc
Confidence 555554 3455555999999999999999999999998874
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.90 E-value=3.2e-22 Score=184.73 Aligned_cols=273 Identities=18% Similarity=0.153 Sum_probs=162.7
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCC---
Q 042709 12 PHVLVIPFP-ALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERED--- 87 (398)
Q Consensus 12 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 87 (398)
|||+|...+ +.||+...++|+++| |||+|+|++.....+.+.+. +.+..+++-........-+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 67 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-----------FPVREIPGLGPIQENGRLDRWK 67 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-----------cCEEEccCceEeccCCccchHH
Confidence 799987776 899999999999999 69999999998665555332 3444443211111101111
Q ss_pred -----------HHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCC
Q 042709 88 -----------PHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPN 155 (398)
Q Consensus 88 -----------~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (398)
....++...+.++.. ||+||+|.. +.+..+|+..|||++.+........
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~------------------ 128 (318)
T PF13528_consen 68 TVRNNIRWLARLARRIRREIRWLREFRPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLH------------------ 128 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHccc------------------
Confidence 111222222333566 999999954 4578999999999998776553210
Q ss_pred CccccccccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHh--hhccceEEeccccccccc--cccCCCceec
Q 042709 156 GFAVLNYGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQA--FKISKWVLNNSVYELDSP--ACDLIPSVLP 231 (398)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~t~~~le~~--~~~~~~~~~~ 231 (398)
+.. .+. .. ......+.+.... ...++..+.-++.....+ .....+++.
T Consensus 129 -------------~~~------~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~- 180 (318)
T PF13528_consen 129 -------------PNF------WLP-----WD---QDFGRLIERYIDRYHFPPADRRLALSFYPPLPPFFRVPFVGPII- 180 (318)
T ss_pred -------------ccC------Ccc-----hh---hhHHHHHHHhhhhccCCcccceecCCccccccccccccccCchh-
Confidence 000 000 00 0001111111111 233333333333200000 000111111
Q ss_pred CCcchHHhhhcCCCCcEEEEEeCCcccCCHHHHHHhhc--------------------cceeccc--CcccccCCCCcce
Q 042709 232 FDSTCLSWRDKQAIGSVTYVAFGRFSILGQEQLEQLAL--------------------GKIVEWA--PQENDLGHPSIAW 289 (398)
Q Consensus 232 v~~~~~~~l~~~~~~~vVyvs~Gs~~~~~~~~~~~~~~--------------------~~v~~~v--pq~~lL~~~~~~~ 289 (398)
.++..+.-. .+++.|+|+||..... +.++.+.. +.+.++. ...++|+.+++
T Consensus 181 -~~~~~~~~~--~~~~~iLv~~gg~~~~--~~~~~l~~~~~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~-- 253 (318)
T PF13528_consen 181 -RPEIRELPP--EDEPKILVYFGGGGPG--DLIEALKALPDYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADL-- 253 (318)
T ss_pred -cccccccCC--CCCCEEEEEeCCCcHH--HHHHHHHhCCCCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCE--
Confidence 112222211 2345788888876432 22221111 2233433 45578888888
Q ss_pred EEecCCcchHHHHHhcCCceecccC--ccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHH
Q 042709 290 FLSHCGWNSTMEGLSMGVPFLCWPS--FADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKAL 355 (398)
Q Consensus 290 ~ItHgG~~s~~eal~~GvP~v~~P~--~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~ 355 (398)
+|||||+||++|++++|+|++++|. ..||..||+++++ +|+|+.+.. ..+++++|+++|+++
T Consensus 254 vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 254 VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEccc---ccCCHHHHHHHHhcC
Confidence 9999999999999999999999999 7899999999999 799999976 789999999998764
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.89 E-value=3.2e-22 Score=185.65 Aligned_cols=289 Identities=16% Similarity=0.107 Sum_probs=168.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCC-CCCCCCCCCC---C
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPD-GLDLQADERE---D 87 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~ 87 (398)
.||++...++.||++|.+++|++|.++||+|+|++++...+. .. ....++.+..++. ++.... ... .
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~---~l-----~~~~g~~~~~~~~~~l~~~~-~~~~~~~ 72 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK---TI-----IEKENIPYYSISSGKLRRYF-DLKNIKD 72 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc---cc-----CcccCCcEEEEeccCcCCCc-hHHHHHH
Confidence 579999999999999999999999999999999998765432 11 1112677777763 221110 000 1
Q ss_pred HHHHHhhchhh---ccCC-ccEEEecCcch--hHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCCCccccc
Q 042709 88 PHKLMTEDPQA---DTEC-TACVIADISVG--WALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNGFAVLN 161 (398)
Q Consensus 88 ~~~~~~~~~~~---~~~~-pD~vi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (398)
+..+.....+. +++. ||+|++..-+. .+..+|..+++|++............-.. ....+.
T Consensus 73 ~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~nr~~--~~~a~~----------- 139 (352)
T PRK12446 73 PFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLANKIA--LRFASK----------- 139 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHHHHHH--HHhhCE-----------
Confidence 11122222222 2666 99999987554 47889999999998755432211110000 000000
Q ss_pred cccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCCCceecCCcchHHhhh
Q 042709 162 YGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLIPSVLPFDSTCLSWRD 241 (398)
Q Consensus 162 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~v~~~~~~~l~ 241 (398)
...+++. ....++. +.+.+... |.++...+.. .+...+.+.
T Consensus 140 -----v~~~f~~--------------------------~~~~~~~-~k~~~tG~-----Pvr~~~~~~~--~~~~~~~~~ 180 (352)
T PRK12446 140 -----IFVTFEE--------------------------AAKHLPK-EKVIYTGS-----PVREEVLKGN--REKGLAFLG 180 (352)
T ss_pred -----EEEEccc--------------------------hhhhCCC-CCeEEECC-----cCCccccccc--chHHHHhcC
Confidence 0000000 0000000 11111111 1011000000 001111122
Q ss_pred cCCCCcEEEEEeCCcccCCHHH-----HHHhhc----------------------cceeccc-C-cccccCCCCcceEEe
Q 042709 242 KQAIGSVTYVAFGRFSILGQEQ-----LEQLAL----------------------GKIVEWA-P-QENDLGHPSIAWFLS 292 (398)
Q Consensus 242 ~~~~~~vVyvs~Gs~~~~~~~~-----~~~~~~----------------------~~v~~~v-p-q~~lL~~~~~~~~It 292 (398)
..+++++|+|.-||.......+ +..+.. ..+.+|+ + ...+|+++++ +||
T Consensus 181 l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~m~~~~~~adl--vIs 258 (352)
T PRK12446 181 FSRKKPVITIMGGSLGAKKINETVREALPELLLKYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGELPDILAITDF--VIS 258 (352)
T ss_pred CCCCCcEEEEECCccchHHHHHHHHHHHHhhccCcEEEEEeCCchHHHHHhhcCCcEEecchhhhHHHHHHhCCE--EEE
Confidence 2234567777777765422211 111110 1233555 3 4468888998 999
Q ss_pred cCCcchHHHHHhcCCceecccCc-----cchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH-HHHHHHH
Q 042709 293 HCGWNSTMEGLSMGVPFLCWPSF-----ADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND-GIKGNSL 366 (398)
Q Consensus 293 HgG~~s~~eal~~GvP~v~~P~~-----~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~-~~~~~a~ 366 (398)
|||.+|++|++++|+|+|++|+. .||..||+.+++ .|+|..+.. ..++++.|.+++.++++|+ .|+++++
T Consensus 259 r~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l~~---~~~~~~~l~~~l~~ll~~~~~~~~~~~ 334 (352)
T PRK12446 259 RAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASVLYE---EDVTVNSLIKHVEELSHNNEKYKTALK 334 (352)
T ss_pred CCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEEcch---hcCCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999984 489999999999 699999974 6789999999999999886 4554443
Q ss_pred H
Q 042709 367 K 367 (398)
Q Consensus 367 ~ 367 (398)
+
T Consensus 335 ~ 335 (352)
T PRK12446 335 K 335 (352)
T ss_pred H
Confidence 3
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.86 E-value=1.9e-20 Score=172.55 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=68.3
Q ss_pred cceecccC--cccccCCCCcceEEecCCcchHHHHHhcCCceecccCcc--chhhHHHhhccceeeEEEecCCCCCCcCH
Q 042709 270 GKIVEWAP--QENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFA--DQHHNRNYICDVWKIGVQLLPDENGIITR 345 (398)
Q Consensus 270 ~~v~~~vp--q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~g~g~~l~~~~~~~~~~ 345 (398)
+.+.+|.| ....|+.+++ +|||||.+|++|++++|+|++++|... ||..||+.+++ .|+|+.+.. ..+
T Consensus 231 v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~---~~~-- 302 (321)
T TIGR00661 231 VEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEY---KEL-- 302 (321)
T ss_pred EEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcCh---hhH--
Confidence 34457776 4566777777 999999999999999999999999954 89999999999 699999965 333
Q ss_pred HHHHHHHHHHhcCHHHH
Q 042709 346 QEIQINVKALLKNDGIK 362 (398)
Q Consensus 346 ~~l~~ai~~~l~~~~~~ 362 (398)
++.+++.++++|+.|+
T Consensus 303 -~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 303 -RLLEAILDIRNMKRYK 318 (321)
T ss_pred -HHHHHHHhcccccccc
Confidence 6677777888877654
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=3.9e-18 Score=156.55 Aligned_cols=293 Identities=17% Similarity=0.118 Sum_probs=169.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCH--
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGI-DVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP-- 88 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 88 (398)
++|++...++.||+.|.++|+++|.++|+ +|.+..+....+.... ...++.++.++.+...........
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~--------~~~~~~~~~I~~~~~~~~~~~~~~~~ 72 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV--------KQYGIEFELIPSGGLRRKGSLKLLKA 72 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec--------cccCceEEEEecccccccCcHHHHHH
Confidence 46888899999999999999999999999 5888866554443221 123788888875443332111122
Q ss_pred -HHHHhhchh---hccCC-ccEEEecCcch--hHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCCCccccc
Q 042709 89 -HKLMTEDPQ---ADTEC-TACVIADISVG--WALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNGFAVLN 161 (398)
Q Consensus 89 -~~~~~~~~~---~~~~~-pD~vi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (398)
..+.....+ .+++. ||+|+.-.-++ .+..+|..+|||++..-...
T Consensus 73 ~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~---------------------------- 124 (357)
T COG0707 73 PFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA---------------------------- 124 (357)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCC----------------------------
Confidence 222222222 22666 99999965554 67788889999999743321
Q ss_pred cccccccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCCCceecCCcchHHhhh
Q 042709 162 YGLISLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLIPSVLPFDSTCLSWRD 241 (398)
Q Consensus 162 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~v~~~~~~~l~ 241 (398)
.+|+.+.............. .+ .......+...... .|..+.+.. .+....-.+
T Consensus 125 ------~~G~ank~~~~~a~~V~~~f----------~~-~~~~~~~~~~~~tG--------~Pvr~~~~~-~~~~~~~~~ 178 (357)
T COG0707 125 ------VPGLANKILSKFAKKVASAF----------PK-LEAGVKPENVVVTG--------IPVRPEFEE-LPAAEVRKD 178 (357)
T ss_pred ------CcchhHHHhHHhhceeeecc----------cc-ccccCCCCceEEec--------CcccHHhhc-cchhhhhhh
Confidence 12211100000000000000 00 00000000000000 001111110 001110111
Q ss_pred cCCCCcEEEEEeCCcccCC-H----HHHHHhhc-------------------------cceecccC-cccccCCCCcceE
Q 042709 242 KQAIGSVTYVAFGRFSILG-Q----EQLEQLAL-------------------------GKIVEWAP-QENDLGHPSIAWF 290 (398)
Q Consensus 242 ~~~~~~vVyvs~Gs~~~~~-~----~~~~~~~~-------------------------~~v~~~vp-q~~lL~~~~~~~~ 290 (398)
...++++|+|.=||..... . +....+.. ..+.+|.. ...+|+-+++ +
T Consensus 179 ~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--v 256 (357)
T COG0707 179 GRLDKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADL--V 256 (357)
T ss_pred ccCCCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--E
Confidence 1224568888888775411 1 11111110 12235554 4457777777 9
Q ss_pred EecCCcchHHHHHhcCCceecccC-c---cchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCHHHHHHHH
Q 042709 291 LSHCGWNSTMEGLSMGVPFLCWPS-F---ADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSL 366 (398)
Q Consensus 291 ItHgG~~s~~eal~~GvP~v~~P~-~---~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~ 366 (398)
||++|.+|+.|++++|+|+|.+|. . .||..||+.+++ .|.|..++. ..+|.++|.+.|.++++++ ++.+
T Consensus 257 IsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~-~gaa~~i~~---~~lt~~~l~~~i~~l~~~~---~~l~ 329 (357)
T COG0707 257 ISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEK-AGAALVIRQ---SELTPEKLAELILRLLSNP---EKLK 329 (357)
T ss_pred EeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHh-CCCEEEecc---ccCCHHHHHHHHHHHhcCH---HHHH
Confidence 999999999999999999999998 3 489999999999 599999985 6799999999999999984 3555
Q ss_pred HHHHHHHHH
Q 042709 367 KLKEIARKI 375 (398)
Q Consensus 367 ~l~~~~~~~ 375 (398)
+|++..++.
T Consensus 330 ~m~~~a~~~ 338 (357)
T COG0707 330 AMAENAKKL 338 (357)
T ss_pred HHHHHHHhc
Confidence 555555543
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.76 E-value=6.6e-17 Score=151.74 Aligned_cols=115 Identities=12% Similarity=0.117 Sum_probs=90.8
Q ss_pred cceeccc-CcccccCCCCcceEEecCCcchHHHHHhcCCceecccC----ccchhhHHHhhccceeeEEEecCCCCCCcC
Q 042709 270 GKIVEWA-PQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPS----FADQHHNRNYICDVWKIGVQLLPDENGIIT 344 (398)
Q Consensus 270 ~~v~~~v-pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~ 344 (398)
+.+.+|+ +..++|+.+++ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+ .|.|+.++. ..++
T Consensus 237 v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~---~~~~ 310 (357)
T PRK00726 237 AEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAALLIPQ---SDLT 310 (357)
T ss_pred EEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEc---ccCC
Confidence 4555777 45688988998 9999999999999999999999997 4789999999998 599999976 5578
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 345 RQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 345 ~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
++.|.++|.++++|++++++..+-+.... +.++..+.++.+.+.++
T Consensus 311 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 311 PEKLAEKLLELLSDPERLEAMAEAARALG----KPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhh
Confidence 99999999999999887766655544432 24555555555555544
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.63 E-value=4.1e-14 Score=132.47 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=74.9
Q ss_pred cceeccc-CcccccCCCCcceEEecCCcchHHHHHhcCCceecccC----ccchhhHHHhhccceeeEEEecCCCCCCcC
Q 042709 270 GKIVEWA-PQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPS----FADQHHNRNYICDVWKIGVQLLPDENGIIT 344 (398)
Q Consensus 270 ~~v~~~v-pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~ 344 (398)
+.+.+|+ ....+|+.+++ +|+++|.+++.||+.+|+|+|+.|. ..+|..|+..+.+ .|.|+.++. ...+
T Consensus 237 v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~---~~~~ 310 (350)
T cd03785 237 YEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-AGAAVLIPQ---EELT 310 (350)
T ss_pred eEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEec---CCCC
Confidence 4455666 55678888888 9999999999999999999999986 4678999999988 599999965 4468
Q ss_pred HHHHHHHHHHHhcCHHHHHHHH
Q 042709 345 RQEIQINVKALLKNDGIKGNSL 366 (398)
Q Consensus 345 ~~~l~~ai~~~l~~~~~~~~a~ 366 (398)
.++|.++|.++++|++.+++..
T Consensus 311 ~~~l~~~i~~ll~~~~~~~~~~ 332 (350)
T cd03785 311 PERLAAALLELLSDPERLKAMA 332 (350)
T ss_pred HHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999876554433
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.59 E-value=1.8e-13 Score=128.04 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=70.3
Q ss_pred CcccccCCCCcceEEecCCcchHHHHHhcCCceecccCc---cchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHH
Q 042709 277 PQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSF---ADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVK 353 (398)
Q Consensus 277 pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~---~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~ 353 (398)
+...+|+.+++ +|+++|.+++.||+++|+|+|+.|.. .+|..|+..+.+ .|.|..++. +..++++|.++|.
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~---~~~~~~~l~~~i~ 316 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQ---KELLPEKLLEALL 316 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEec---ccCCHHHHHHHHH
Confidence 45678888888 99999988999999999999999873 468889988988 599998865 5568999999999
Q ss_pred HHhcCHHHHHHHH
Q 042709 354 ALLKNDGIKGNSL 366 (398)
Q Consensus 354 ~~l~~~~~~~~a~ 366 (398)
++++|++.+++..
T Consensus 317 ~ll~~~~~~~~~~ 329 (348)
T TIGR01133 317 KLLLDPANLEAMA 329 (348)
T ss_pred HHHcCHHHHHHHH
Confidence 9999986554443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.55 E-value=4.5e-14 Score=133.08 Aligned_cols=104 Identities=17% Similarity=0.102 Sum_probs=83.4
Q ss_pred ccccCCCCcceEEecCCcchHHHHHhcCCceecc----cCcc---------chhhHHHhhccceeeEEEecCCCCCCcCH
Q 042709 279 ENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCW----PSFA---------DQHHNRNYICDVWKIGVQLLPDENGIITR 345 (398)
Q Consensus 279 ~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~----P~~~---------DQ~~na~~~~~~~g~g~~l~~~~~~~~~~ 345 (398)
..+|+.+++ +|+-+|..|+ |++.+|+|+|++ |+.. +|..|++.++.+ ++...+.- ..+|+
T Consensus 262 ~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q---~~~~~ 334 (385)
T TIGR00215 262 RKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELLQ---EECTP 334 (385)
T ss_pred HHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcC---CCCCH
Confidence 457777777 9999999988 999999999999 7631 277899999985 99988864 67999
Q ss_pred HHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 042709 346 QEIQINVKALLKND----GIKGNSLKLKEIARKILVEGGSSFRKFDSF 389 (398)
Q Consensus 346 ~~l~~ai~~~l~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 389 (398)
+.|.+++.++++|+ +++++.++--..+++..+++|.+.+..+..
T Consensus 335 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i 382 (385)
T TIGR00215 335 HPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAV 382 (385)
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999998 777777666666666666677776665543
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.53 E-value=5.1e-13 Score=120.21 Aligned_cols=252 Identities=14% Similarity=0.087 Sum_probs=129.6
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCccchH---HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchh
Q 042709 21 ALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA---KIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQ 97 (398)
Q Consensus 21 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (398)
+.||+..+++||++|.++||+|+|++...... .+++. ++.+..+++... ..++..++. +
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~----------g~~v~~~~~~~~----~~~d~~~~~----~ 74 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSA----------GFPVYELPDESS----RYDDALELI----N 74 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHc----------CCeEEEecCCCc----hhhhHHHHH----H
Confidence 78999999999999999999999999875443 34343 688877764321 122333333 3
Q ss_pred hccCC-ccEEEecCcchhH--HHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCCCccccccccccccCCCCCC
Q 042709 98 ADTEC-TACVIADISVGWA--LEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNGFAVLNYGLISLSNEIPAL 174 (398)
Q Consensus 98 ~~~~~-pD~vi~D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (398)
.+++. ||+||+|.+..-. ....+..+.+.+.+-=.....+ ..+-.++. .+.....
T Consensus 75 ~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~---------~~D~vin~-------------~~~~~~~ 132 (279)
T TIGR03590 75 LLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPH---------DCDLLLDQ-------------NLGADAS 132 (279)
T ss_pred HHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCc---------CCCEEEeC-------------CCCcCHh
Confidence 33455 9999999875422 2223344666555432111000 00101100 0000000
Q ss_pred ccCc-cCc-CCCCCCchhhHHHHHHHHHHHhh-hcc-ceEEeccccccccccccCCCceecCCcchHHhhhcCCCCcEEE
Q 042709 175 NRNE-YTW-SFPTEPNIQKIFFGSTCATVQAF-KIS-KWVLNNSVYELDSPACDLIPSVLPFDSTCLSWRDKQAIGSVTY 250 (398)
Q Consensus 175 ~~~~-l~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~l~~t~~~le~~~~~~~~~~~~v~~~~~~~l~~~~~~~vVy 250 (398)
.... .+. .........-...+.|....... .+. ...++-++-+.++. ++ ...+.+.+......--+.
T Consensus 133 ~y~~~~~~~~~~l~G~~Y~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~------~~---~~~~l~~l~~~~~~~~i~ 203 (279)
T TIGR03590 133 DYQGLVPANCRLLLGPSYALLREEFYQLATANKRRKPLRRVLVSFGGADPD------NL---TLKLLSALAESQINISIT 203 (279)
T ss_pred HhcccCcCCCeEEecchHHhhhHHHHHhhHhhhcccccCeEEEEeCCcCCc------CH---HHHHHHHHhccccCceEE
Confidence 0000 000 00000000111122222111111 110 01111111122221 00 112333333322222344
Q ss_pred EEeCCcccCCHHHHHHhhc----cceecccCcc-cccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhh
Q 042709 251 VAFGRFSILGQEQLEQLAL----GKIVEWAPQE-NDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYI 325 (398)
Q Consensus 251 vs~Gs~~~~~~~~~~~~~~----~~v~~~vpq~-~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~ 325 (398)
+-.|+... ..+.++++.. +.+..++++. .+|+.+++ +||+|| +|++|+++.|+|+|++|...+|..||+.+
T Consensus 204 vv~G~~~~-~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 204 LVTGSSNP-NLDELKKFAKEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred EEECCCCc-CHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 55665432 2334444433 4566888865 79999999 999999 99999999999999999999999999753
No 37
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.45 E-value=1e-13 Score=111.65 Aligned_cols=111 Identities=23% Similarity=0.250 Sum_probs=80.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCC--CCCCCCCCC---CH
Q 042709 14 VLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDG--LDLQADERE---DP 88 (398)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~ 88 (398)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. |++|.+++.. ++....... .+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~----------Gl~~~~~~~~~~~~~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA----------GLEFVPIPGDSRLPRSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT----------T-EEEESSSCGGGGHHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc----------CceEEEecCCcCcCcccchhhhhhhH
Confidence 78999999999999999999999999999999999999999776 7999999866 111000000 11
Q ss_pred HHH---Hhhchhhc-----------cC-C-ccEEEecCcchhHHHHHHHhCCceEEEcCCcH
Q 042709 89 HKL---MTEDPQAD-----------TE-C-TACVIADISVGWALEVAEAIGIARAAFVPFGP 134 (398)
Q Consensus 89 ~~~---~~~~~~~~-----------~~-~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~ 134 (398)
... +....+.+ .+ . +|+++.+.....+..+|+++|||++.....+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 71 ARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred HHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 111 11111111 23 4 88999999888999999999999999877665
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.39 E-value=3e-11 Score=114.42 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=70.8
Q ss_pred cceecccCcc-cccCCCCcceEEecCCcchHHHHHhcCCceecc-cCccchhhHHHhhccceeeEEEecCCCCCCcCHHH
Q 042709 270 GKIVEWAPQE-NDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCW-PSFADQHHNRNYICDVWKIGVQLLPDENGIITRQE 347 (398)
Q Consensus 270 ~~v~~~vpq~-~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~ 347 (398)
+.+.+|+++. .+++.+++ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+.+ .|+|+... +.++
T Consensus 258 v~~~g~~~~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~~-------~~~~ 327 (380)
T PRK13609 258 LKVFGYVENIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVIR-------DDEE 327 (380)
T ss_pred EEEEechhhHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEEC-------CHHH
Confidence 4556888764 68988888 99999988999999999999985 667778889988887 49887652 6799
Q ss_pred HHHHHHHHhcCHHHHHHHH
Q 042709 348 IQINVKALLKNDGIKGNSL 366 (398)
Q Consensus 348 l~~ai~~~l~~~~~~~~a~ 366 (398)
|.++|.++++|++.+++..
T Consensus 328 l~~~i~~ll~~~~~~~~m~ 346 (380)
T PRK13609 328 VFAKTEALLQDDMKLLQMK 346 (380)
T ss_pred HHHHHHHHHCCHHHHHHHH
Confidence 9999999999986554443
No 39
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.38 E-value=3.3e-11 Score=106.21 Aligned_cols=83 Identities=28% Similarity=0.307 Sum_probs=69.7
Q ss_pred ceeccc-CcccccCCCCcceEEecCCcchHHHHHhcCCceecccCc---cchhhHHHhhccceeeEEEecCCCCCCcCHH
Q 042709 271 KIVEWA-PQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSF---ADQHHNRNYICDVWKIGVQLLPDENGIITRQ 346 (398)
Q Consensus 271 ~v~~~v-pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~---~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~ 346 (398)
.+..|- ....++..++. +|+-||+||++|-|++|+|.+++|.. -+|-.-|.|+++ ||+.-.+.+ +.++++
T Consensus 280 ~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~-LGL~dvL~p---e~lt~~ 353 (400)
T COG4671 280 SIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEE-LGLVDVLLP---ENLTPQ 353 (400)
T ss_pred EEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHh-cCcceeeCc---ccCChH
Confidence 344443 34456666666 99999999999999999999999983 599999999999 999999987 779999
Q ss_pred HHHHHHHHHhcCH
Q 042709 347 EIQINVKALLKND 359 (398)
Q Consensus 347 ~l~~ai~~~l~~~ 359 (398)
.+.++|...++-|
T Consensus 354 ~La~al~~~l~~P 366 (400)
T COG4671 354 NLADALKAALARP 366 (400)
T ss_pred HHHHHHHhcccCC
Confidence 9999999999833
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.32 E-value=3e-11 Score=114.42 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=67.8
Q ss_pred ccccCCCCcceEEecCCcchHHHHHhcCCceecccCc------cchh--hH-----HHhhccceeeEEEecCCCCCCcCH
Q 042709 279 ENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSF------ADQH--HN-----RNYICDVWKIGVQLLPDENGIITR 345 (398)
Q Consensus 279 ~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~------~DQ~--~n-----a~~~~~~~g~g~~l~~~~~~~~~~ 345 (398)
..+++.+++ +|+-+|.+++ |++.+|+|+|+.|.. .++. .| +..+++. +++..+.- ...++
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~---~~~~~ 328 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQ---EEATP 328 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcC---CCCCH
Confidence 456777887 9999998887 999999999988532 2221 12 2333332 33433432 56789
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 042709 346 QEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393 (398)
Q Consensus 346 ~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 393 (398)
++|.++|.++++|++.+++..+-.+.+++.. ..|+..+.++...+.+
T Consensus 329 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 329 EKLARALLPLLADGARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 9999999999999876665555444344333 2455555554444433
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.29 E-value=5.8e-13 Score=110.78 Aligned_cols=85 Identities=18% Similarity=0.287 Sum_probs=69.4
Q ss_pred ceecccC-cccccCCCCcceEEecCCcchHHHHHhcCCceecccCcc----chhhHHHhhccceeeEEEecCCCCCCcCH
Q 042709 271 KIVEWAP-QENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFA----DQHHNRNYICDVWKIGVQLLPDENGIITR 345 (398)
Q Consensus 271 ~v~~~vp-q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~----DQ~~na~~~~~~~g~g~~l~~~~~~~~~~ 345 (398)
.+.+|++ ...+++.+++ +|||||.||++|++.+|+|+|++|... +|..||..+++ .|+|..+.. ...+.
T Consensus 58 ~~~~~~~~m~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~---~~~~~ 131 (167)
T PF04101_consen 58 KVFGFVDNMAELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDE---SELNP 131 (167)
T ss_dssp EEECSSSSHHHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSEC---CC-SC
T ss_pred EEEechhhHHHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCc---ccCCH
Confidence 3457777 7778888888 999999999999999999999999988 99999999999 599999975 56779
Q ss_pred HHHHHHHHHHhcCHHH
Q 042709 346 QEIQINVKALLKNDGI 361 (398)
Q Consensus 346 ~~l~~ai~~~l~~~~~ 361 (398)
+.|.++|.++++++..
T Consensus 132 ~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 132 EELAEAIEELLSDPEK 147 (167)
T ss_dssp CCHHHHHHCHCCCHH-
T ss_pred HHHHHHHHHHHcCcHH
Confidence 9999999999998754
No 42
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.19 E-value=3.5e-09 Score=100.44 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=80.2
Q ss_pred cceecccCcc-cccCCCCcceEEecCCcchHHHHHhcCCceecc-cCccchhhHHHhhccceeeEEEecCCCCCCcCHHH
Q 042709 270 GKIVEWAPQE-NDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCW-PSFADQHHNRNYICDVWKIGVQLLPDENGIITRQE 347 (398)
Q Consensus 270 ~~v~~~vpq~-~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~ 347 (398)
+.+.+|+++. .+++.+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|+|+... +.++
T Consensus 258 v~~~G~~~~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~-------~~~~ 327 (391)
T PRK13608 258 VLILGYTKHMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD-------TPEE 327 (391)
T ss_pred eEEEeccchHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC-------CHHH
Confidence 4455777543 58888888 99998888999999999999998 776777899999988 59998762 7889
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 042709 348 IQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393 (398)
Q Consensus 348 l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 393 (398)
+.++|.++++|++.+ ++|++..++.. ...+....++.+.+.+
T Consensus 328 l~~~i~~ll~~~~~~---~~m~~~~~~~~-~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 328 AIKIVASLTNGNEQL---TNMISTMEQDK-IKYATQTICRDLLDLI 369 (391)
T ss_pred HHHHHHHHhcCHHHH---HHHHHHHHHhc-CCCCHHHHHHHHHHHh
Confidence 999999999987543 34444444432 2344444444444444
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.19 E-value=7e-09 Score=97.03 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=73.3
Q ss_pred cceecccCccc---ccCCCCcceEEecCC----cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSHCG----WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItHgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.+|+++.+ +++.+++ +|..+. .+++.||+++|+|+|+.+.. .+...+++ .+.|.....
T Consensus 249 v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~-~~~g~~~~~----- 316 (364)
T cd03814 249 VHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTD-GENGLLVEP----- 316 (364)
T ss_pred EEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcC-CcceEEcCC-----
Confidence 34557777665 6888888 886654 47899999999999987644 45556666 388887743
Q ss_pred cCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 042709 343 ITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 393 (398)
-+.+++.++|.++++|++.+++..+-+....+ .-+.....+++++.+
T Consensus 317 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 363 (364)
T cd03814 317 GDAEAFAAALAALLADPELRRRMAARARAEAE----RRSWEAFLDNLLEAY 363 (364)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHhh
Confidence 47788999999999998765544443333322 344445555555543
No 44
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=5e-09 Score=89.88 Aligned_cols=293 Identities=15% Similarity=0.065 Sum_probs=168.1
Q ss_pred CEEEEEcCC----CccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCC
Q 042709 12 PHVLVIPFP----ALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERED 87 (398)
Q Consensus 12 ~~il~~~~~----~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (398)
|||+|.+-+ +.||+..++.||++|.++|..++|++.+..++.+.+.. .++.+... ...+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~--------~~f~~~~~---------~~~n 63 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY--------EGFKVLEG---------RGNN 63 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh--------hhccceee---------eccc
Confidence 688888775 67999999999999999999999999988776544321 12222111 1111
Q ss_pred HHHHHhhchhhccCC-ccEEEecCcch---hHHHHHHHhCCceEEEcCCcHHHHHHHhhhhhhhhhccCCCCCccccccc
Q 042709 88 PHKLMTEDPQADTEC-TACVIADISVG---WALEVAEAIGIARAAFVPFGPGSLALSLHIPKLLDAAIIDPNGFAVLNYG 163 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~-pD~vi~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (398)
.+++. +|++|.|.+.. -...+..+.+.+.+.|-.-....+...... .+.....+ .
T Consensus 64 ----------~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d~d~i----vN~~~~a~-------~ 122 (318)
T COG3980 64 ----------LIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKDNDLI----VNAILNAN-------D 122 (318)
T ss_pred ----------ccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhhhHhh----hhhhhcch-------h
Confidence 23566 99999999976 345677788999999877655433311110 00000000 0
Q ss_pred cccccCCCCCCccCccCcCCCCCCc-hhhHHHHHHHHHHHhhhccceEEeccccccccccccCCCceecCCcchHHhhhc
Q 042709 164 LISLSNEIPALNRNEYTWSFPTEPN-IQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLIPSVLPFDSTCLSWRDK 242 (398)
Q Consensus 164 ~~~~~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~v~~~~~~~l~~ 242 (398)
.....|.-. . .++.... ..+.-|....+....-+..+..+.-+ +-|+- ++ .-.+.+.|.+
T Consensus 123 ~y~~v~~k~-------~-~~lGp~y~~lr~eF~~~r~~~~~r~~r~ilI~lG--GsDpk------~l---t~kvl~~L~~ 183 (318)
T COG3980 123 YYGLVPNKT-------R-YYLGPGYAPLRPEFYALREENTERPKRDILITLG--GSDPK------NL---TLKVLAELEQ 183 (318)
T ss_pred hccccCcce-------E-EEecCCceeccHHHHHhHHHHhhcchheEEEEcc--CCChh------hh---HHHHHHHhhc
Confidence 000000000 0 0000000 00111111111110001222222211 11111 00 0123334444
Q ss_pred CCCCcEEEEEeCCcccCCHHHHHHhhc-----cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccc
Q 042709 243 QAIGSVTYVAFGRFSILGQEQLEQLAL-----GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFAD 317 (398)
Q Consensus 243 ~~~~~vVyvs~Gs~~~~~~~~~~~~~~-----~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~D 317 (398)
.. -.+-+-.||. ....+.+.+.+. .+..+-=....++..+++ .|+-|| .|+.|++.-|+|.+++|+.-.
T Consensus 184 ~~--~nl~iV~gs~-~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaG-stlyEa~~lgvP~l~l~~a~N 257 (318)
T COG3980 184 KN--VNLHIVVGSS-NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAG-STLYEALLLGVPSLVLPLAEN 257 (318)
T ss_pred cC--eeEEEEecCC-CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccc-hHHHHHHHhcCCceEEeeecc
Confidence 32 2556666643 334444444443 122222234568888888 898887 489999999999999999999
Q ss_pred hhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 042709 318 QHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLKLKEIA 372 (398)
Q Consensus 318 Q~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~ 372 (398)
|---|+..+. +|+-..++. .+.++....-+.+++.|...|++.-.-++.+
T Consensus 258 Q~~~a~~f~~-lg~~~~l~~----~l~~~~~~~~~~~i~~d~~~rk~l~~~~~~i 307 (318)
T COG3980 258 QIATAKEFEA-LGIIKQLGY----HLKDLAKDYEILQIQKDYARRKNLSFGSKLI 307 (318)
T ss_pred HHHHHHHHHh-cCchhhccC----CCchHHHHHHHHHhhhCHHHhhhhhhcccee
Confidence 9999999988 798888864 4788888888999999988777765544443
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.05 E-value=1.2e-07 Score=92.21 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=57.9
Q ss_pred cceecccCccc---ccCCCCcceEEecCC----cchHHHHHhcCCceecccCccchhhHHHhhcc---ceeeEEEecCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSHCG----WNSTMEGLSMGVPFLCWPSFADQHHNRNYICD---VWKIGVQLLPDE 339 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItHgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~---~~g~g~~l~~~~ 339 (398)
+.+.+++++.+ +++.+++ ||.-.. ..++.||+.+|+|+|+-... .....+.+ . +.|..++.
T Consensus 314 V~f~G~v~~~ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-- 384 (465)
T PLN02871 314 TVFTGMLQGDELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-- 384 (465)
T ss_pred eEEeccCCHHHHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC--
Confidence 34557777544 6777777 775433 34688999999999986543 22233333 3 67888754
Q ss_pred CCCcCHHHHHHHHHHHhcCHHHHHHHH
Q 042709 340 NGIITRQEIQINVKALLKNDGIKGNSL 366 (398)
Q Consensus 340 ~~~~~~~~l~~ai~~~l~~~~~~~~a~ 366 (398)
-+.+++.++|.++++|++.+++..
T Consensus 385 ---~d~~~la~~i~~ll~~~~~~~~~~ 408 (465)
T PLN02871 385 ---GDVDDCVEKLETLLADPELRERMG 408 (465)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHH
Confidence 378999999999999886544433
No 46
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.93 E-value=2.2e-07 Score=88.33 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=59.6
Q ss_pred cceecccCccc---ccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.+|+|+.+ +++.+++ ++.. |-..++.||+++|+|+|+-.. ......+++ -+.|...+.
T Consensus 285 v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i~~-~~~g~~~~~----- 352 (398)
T cd03800 285 VDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIVVD-GVTGLLVDP----- 352 (398)
T ss_pred EEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHccC-CCCeEEeCC-----
Confidence 44568888765 4778887 7744 324689999999999998654 345556666 378888854
Q ss_pred cCHHHHHHHHHHHhcCHHHH
Q 042709 343 ITRQEIQINVKALLKNDGIK 362 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~~ 362 (398)
-+.+++.++|.++++|++.+
T Consensus 353 ~~~~~l~~~i~~l~~~~~~~ 372 (398)
T cd03800 353 RDPEALAAALRRLLTDPALR 372 (398)
T ss_pred CCHHHHHHHHHHHHhCHHHH
Confidence 37999999999999987543
No 47
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.92 E-value=1.6e-07 Score=87.88 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=57.3
Q ss_pred cceecccCccc---ccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.+++|+.+ ++..+++ +|.. |...++.||+.+|+|+|+.. ....+..+.+ -+.|..++.+
T Consensus 261 v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~-~~~g~~~~~~---- 329 (374)
T cd03817 261 VIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVAD-GENGFLFPPG---- 329 (374)
T ss_pred EEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheec-CceeEEeCCC----
Confidence 45568888765 5778888 6643 33468999999999999854 4455666666 3788888541
Q ss_pred cCHHHHHHHHHHHhcCHHH
Q 042709 343 ITRQEIQINVKALLKNDGI 361 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~ 361 (398)
+. ++.++|.++++|++.
T Consensus 330 -~~-~~~~~i~~l~~~~~~ 346 (374)
T cd03817 330 -DE-ALAEALLRLLQDPEL 346 (374)
T ss_pred -CH-HHHHHHHHHHhChHH
Confidence 22 899999999998753
No 48
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.92 E-value=9e-07 Score=83.37 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=55.8
Q ss_pred eecccCc-ccccCCCCcceEEe----cCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHH
Q 042709 272 IVEWAPQ-ENDLGHPSIAWFLS----HCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQ 346 (398)
Q Consensus 272 v~~~vpq-~~lL~~~~~~~~It----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~ 346 (398)
+.++.++ ..++..+++ +|. -|...++.||+.+|+|+|+- |....+..+.+. ..|...+. -+.+
T Consensus 257 ~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s----~~~~~~e~i~~~-~~G~~~~~-----~~~~ 324 (371)
T cd04962 257 FLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVAS----NAGGIPEVVKHG-ETGFLVDV-----GDVE 324 (371)
T ss_pred EecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEe----CCCCchhhhcCC-CceEEcCC-----CCHH
Confidence 3344443 346777777 663 23456999999999999985 444556666652 57776643 3789
Q ss_pred HHHHHHHHHhcCHHHHHH
Q 042709 347 EIQINVKALLKNDGIKGN 364 (398)
Q Consensus 347 ~l~~ai~~~l~~~~~~~~ 364 (398)
++.++|.++++|+..+++
T Consensus 325 ~l~~~i~~l~~~~~~~~~ 342 (371)
T cd04962 325 AMAEYALSLLEDDELWQE 342 (371)
T ss_pred HHHHHHHHHHhCHHHHHH
Confidence 999999999998754443
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.88 E-value=3.9e-07 Score=85.70 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=58.8
Q ss_pred cceecccCccc---ccCCCCcceEEecCC---------cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSHCG---------WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLP 337 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItHgG---------~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~ 337 (398)
+.+.+++++.+ ++..+++ +|.... -+++.||+.+|+|+|+.+..+.+. .+.+ .+.|..++.
T Consensus 277 v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~-~~~g~~~~~ 349 (394)
T cd03794 277 VTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEE-AGAGLVVPP 349 (394)
T ss_pred EEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhcc-CCcceEeCC
Confidence 44557787654 5777887 664322 234799999999999987655444 3334 267777743
Q ss_pred CCCCCcCHHHHHHHHHHHhcCHHHHHHHHH
Q 042709 338 DENGIITRQEIQINVKALLKNDGIKGNSLK 367 (398)
Q Consensus 338 ~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~ 367 (398)
-+.+++.++|.++++|++.+++..+
T Consensus 350 -----~~~~~l~~~i~~~~~~~~~~~~~~~ 374 (394)
T cd03794 350 -----GDPEALAAAILELLDDPEERAEMGE 374 (394)
T ss_pred -----CCHHHHHHHHHHHHhChHHHHHHHH
Confidence 3789999999999988765544433
No 50
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.87 E-value=2.7e-07 Score=87.40 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=62.3
Q ss_pred cccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccce----eeEEEecCCCCCCcCHHHHHHHHH
Q 042709 278 QENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVW----KIGVQLLPDENGIITRQEIQINVK 353 (398)
Q Consensus 278 q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~----g~g~~l~~~~~~~~~~~~l~~ai~ 353 (398)
...+++.+++ +|+-+|..| .|+...|+|+|++|.-..|. |+...++ . |.++.+. ..+.+.|.+++.
T Consensus 290 ~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~-~~~l~g~~~~l~-----~~~~~~l~~~l~ 359 (396)
T TIGR03492 290 FAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEA-QSRLLGGSVFLA-----SKNPEQAAQVVR 359 (396)
T ss_pred HHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHh-hHhhcCCEEecC-----CCCHHHHHHHHH
Confidence 4567888888 999999766 99999999999999877776 9876654 2 6666663 245699999999
Q ss_pred HHhcCHHHHHHHH
Q 042709 354 ALLKNDGIKGNSL 366 (398)
Q Consensus 354 ~~l~~~~~~~~a~ 366 (398)
++++|++.+++..
T Consensus 360 ~ll~d~~~~~~~~ 372 (396)
T TIGR03492 360 QLLADPELLERCR 372 (396)
T ss_pred HHHcCHHHHHHHH
Confidence 9999986655444
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.87 E-value=8.3e-07 Score=82.58 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=61.5
Q ss_pred cceecccCccc---ccCCCCcceEEe----cCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLS----HCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~It----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.+++++.+ ++..+++ +|. -|..+++.||+.+|+|+|+.+. ......+.+. +.|...+.
T Consensus 258 v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~----- 325 (374)
T cd03801 258 VTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP----- 325 (374)
T ss_pred eEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-----
Confidence 45567887554 6777777 663 3556799999999999998644 5566666653 78887754
Q ss_pred cCHHHHHHHHHHHhcCHHHHHHH
Q 042709 343 ITRQEIQINVKALLKNDGIKGNS 365 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~~~~a 365 (398)
.+.+++.++|.++++|++.++..
T Consensus 326 ~~~~~l~~~i~~~~~~~~~~~~~ 348 (374)
T cd03801 326 GDPEALAEAILRLLDDPELRRRL 348 (374)
T ss_pred CCHHHHHHHHHHHHcChHHHHHH
Confidence 36899999999999998654433
No 52
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.83 E-value=4.3e-07 Score=84.61 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=60.2
Q ss_pred cceecccCccc---ccCCCCcceEEe----cCCc-chHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLS----HCGW-NSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENG 341 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~It----HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~ 341 (398)
+.+.+++++.+ +++.+++ +|. ..|+ .++.||+++|+|+|+-+ ...+...+.+. +.|..++.
T Consensus 245 v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~----~~~~~e~i~~~-~~g~~~~~---- 313 (359)
T cd03823 245 VEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASD----IGGMAELVRDG-VNGLLFPP---- 313 (359)
T ss_pred EEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECC----CCCHHHHhcCC-CcEEEECC----
Confidence 55668887555 4778887 663 2333 47999999999999854 44556666663 57888854
Q ss_pred CcCHHHHHHHHHHHhcCHHHHHHH
Q 042709 342 IITRQEIQINVKALLKNDGIKGNS 365 (398)
Q Consensus 342 ~~~~~~l~~ai~~~l~~~~~~~~a 365 (398)
-+.+++.++|.++++|+..++..
T Consensus 314 -~d~~~l~~~i~~l~~~~~~~~~~ 336 (359)
T cd03823 314 -GDAEDLAAALERLIDDPDLLERL 336 (359)
T ss_pred -CCHHHHHHHHHHHHhChHHHHHH
Confidence 36899999999999987644443
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.79 E-value=3.5e-06 Score=78.22 Aligned_cols=107 Identities=13% Similarity=0.034 Sum_probs=64.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLM 92 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (398)
||++++....|+......+++.|.++||+|++++........ ....++.+..++....... .... ....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~-~~~~ 69 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEE---------LEALGVKVIPIPLDRRGIN-PFKD-LKAL 69 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccc---------cccCCceEEeccccccccC-hHhH-HHHH
Confidence 577777777899999999999999999999999987655421 1113677766653321010 1111 1122
Q ss_pred hhchhhccCC-ccEEEecCcch--hHHHHHHHhCCceEEEc
Q 042709 93 TEDPQADTEC-TACVIADISVG--WALEVAEAIGIARAAFV 130 (398)
Q Consensus 93 ~~~~~~~~~~-pD~vi~D~~~~--~~~~~A~~lgiP~v~~~ 130 (398)
..+...++.. ||+|++..... .+..+++..+.|.+...
T Consensus 70 ~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~ 110 (359)
T cd03808 70 LRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYT 110 (359)
T ss_pred HHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEE
Confidence 2333334556 99999886543 34445553555555433
No 54
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.76 E-value=8.4e-06 Score=77.70 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=59.2
Q ss_pred cceecccCccc---ccCCCCcceEEe---cCCc-chHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLS---HCGW-NSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~It---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.+++|+.+ +|+.+++ +|. +.|. .++.||+++|+|+|+- |...+...+.+. ..|..++.
T Consensus 283 V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~~-~~G~lv~~----- 350 (396)
T cd03818 283 VHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITDG-ENGLLVDF----- 350 (396)
T ss_pred EEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcccC-CceEEcCC-----
Confidence 45568888765 5667787 653 2333 3799999999999984 455566666552 56777744
Q ss_pred cCHHHHHHHHHHHhcCHHHHHH
Q 042709 343 ITRQEIQINVKALLKNDGIKGN 364 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~~~~ 364 (398)
-+++++.++|.++++|++.+++
T Consensus 351 ~d~~~la~~i~~ll~~~~~~~~ 372 (396)
T cd03818 351 FDPDALAAAVIELLDDPARRAR 372 (396)
T ss_pred CCHHHHHHHHHHHHhCHHHHHH
Confidence 4799999999999999754443
No 55
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.74 E-value=7.8e-06 Score=76.65 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=68.0
Q ss_pred ceecccC-cc---cccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 271 KIVEWAP-QE---NDLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 271 ~v~~~vp-q~---~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
...+|++ +. .+++.+++ +|.- |..+++.||+.+|+|+|+... ......+.+. +.|..++ .
T Consensus 247 ~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~-----~ 314 (365)
T cd03825 247 HYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAK-----P 314 (365)
T ss_pred EecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeC-----C
Confidence 3447777 33 46777887 7774 335799999999999998543 3334445442 5677664 3
Q ss_pred cCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 343 ITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
.+.+++.+++.++++|++.+++. ++..++...+.-+.....+++.+.+.
T Consensus 315 ~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 315 GDPEDLAEGIEWLLADPDEREEL---GEAARELAENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHH---HHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 47899999999999987633332 22222222223444555566655543
No 56
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.73 E-value=4.3e-06 Score=77.22 Aligned_cols=81 Identities=12% Similarity=0.127 Sum_probs=55.6
Q ss_pred ccccCCCCcceEEecC----CcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHH
Q 042709 279 ENDLGHPSIAWFLSHC----GWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKA 354 (398)
Q Consensus 279 ~~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~ 354 (398)
..++..+++ +|.-. ..+++.||+.+|+|+|+.+..+.+. .+.+.-..|...+. -+.+++.++|.+
T Consensus 247 ~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~~-----~~~~~~~~~i~~ 315 (348)
T cd03820 247 EEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVPN-----GDVEALAEALLR 315 (348)
T ss_pred HHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeCC-----CCHHHHHHHHHH
Confidence 346777777 66554 2568999999999999865443332 23332127777743 468999999999
Q ss_pred HhcCHHHHHHHHHHHH
Q 042709 355 LLKNDGIKGNSLKLKE 370 (398)
Q Consensus 355 ~l~~~~~~~~a~~l~~ 370 (398)
+++|++.+++..+-+.
T Consensus 316 ll~~~~~~~~~~~~~~ 331 (348)
T cd03820 316 LMEDEELRKRMGANAR 331 (348)
T ss_pred HHcCHHHHHHHHHHHH
Confidence 9999876655554443
No 57
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.70 E-value=8.8e-06 Score=77.59 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=59.5
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhcc
Q 042709 21 ALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADT 100 (398)
Q Consensus 21 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (398)
..|--.-...|++.|+++||+|+++++........+ ....++.+..+|...................+...+.
T Consensus 13 ~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~-------~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (398)
T cd03796 13 LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIR-------YLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLLRNILI 85 (398)
T ss_pred cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcc-------cccCceeEEEecceeccCCccccchhhhHHHHHHHHH
Confidence 345567789999999999999999997532111000 1113566666653211110011112223334444445
Q ss_pred CC-ccEEEecCcch----hHHHHHHHhCCceEEEc
Q 042709 101 EC-TACVIADISVG----WALEVAEAIGIARAAFV 130 (398)
Q Consensus 101 ~~-pD~vi~D~~~~----~~~~~A~~lgiP~v~~~ 130 (398)
.. ||+|.+-.... .+..+++.+++|+|...
T Consensus 86 ~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~ 120 (398)
T cd03796 86 RERITIVHGHQAFSALAHEALLHARTMGLKTVFTD 120 (398)
T ss_pred hcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEe
Confidence 56 99999876432 25667888999998744
No 58
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.64 E-value=1.2e-05 Score=75.13 Aligned_cols=84 Identities=12% Similarity=-0.001 Sum_probs=57.2
Q ss_pred cceecccCccc---ccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.+|+++.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+. ......+.+ +.|...+.
T Consensus 264 v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~--~~~~~~~~----- 330 (375)
T cd03821 264 VTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY--GCGWVVDD----- 330 (375)
T ss_pred EEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc--CceEEeCC-----
Confidence 45668888554 4777777 6543 225689999999999999643 334444433 67766643
Q ss_pred cCHHHHHHHHHHHhcCHHHHHHHHH
Q 042709 343 ITRQEIQINVKALLKNDGIKGNSLK 367 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~~~~a~~ 367 (398)
+.+++.++|.++++|++.+++..+
T Consensus 331 -~~~~~~~~i~~l~~~~~~~~~~~~ 354 (375)
T cd03821 331 -DVDALAAALRRALELPQRLKAMGE 354 (375)
T ss_pred -ChHHHHHHHHHHHhCHHHHHHHHH
Confidence 449999999999999754444333
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.61 E-value=1.4e-05 Score=74.56 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=58.7
Q ss_pred cceecccCcc---cccCCCCcceEE----ecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAPQE---NDLGHPSIAWFL----SHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vpq~---~lL~~~~~~~~I----tHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+-+. ......+.+ .+.|...+.
T Consensus 261 v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~-~~~g~~~~~----- 328 (377)
T cd03798 261 VTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITD-GENGLLVPP----- 328 (377)
T ss_pred EEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcC-CcceeEECC-----
Confidence 4566888864 45777777 65 23556789999999999998554 344555666 366777743
Q ss_pred cCHHHHHHHHHHHhcCHHH
Q 042709 343 ITRQEIQINVKALLKNDGI 361 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~ 361 (398)
-+.+++.++|.++++|+..
T Consensus 329 ~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 329 GDPEALAEAILRLLADPWL 347 (377)
T ss_pred CCHHHHHHHHHHHhcCcHH
Confidence 4899999999999998763
No 60
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.61 E-value=2.3e-05 Score=75.10 Aligned_cols=115 Identities=12% Similarity=-0.040 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCH-
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP- 88 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 88 (398)
++.||.+++....|+-..+..+|+.|+++||+|++++....... .+. ....++.++.++..-.... .....
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-~~~------~~~~~v~~~~~~~~~~~~~-~~~~~~ 73 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-DEI------LSNPNITIHPLPPPPQRLN-KLPFLL 73 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-HHH------hcCCCEEEEECCCCccccc-cchHHH
Confidence 45788888888888989999999999999999999987543211 110 1124788888753210010 00000
Q ss_pred ---HHHH----hhchhhccCC-ccEEEecCcc----h-hHHHHHHHhCCceEEEcCC
Q 042709 89 ---HKLM----TEDPQADTEC-TACVIADISV----G-WALEVAEAIGIARAAFVPF 132 (398)
Q Consensus 89 ---~~~~----~~~~~~~~~~-pD~vi~D~~~----~-~~~~~A~~lgiP~v~~~~~ 132 (398)
.... ..+....... ||+|++.... . .+..++...++|+|..+..
T Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~ 130 (415)
T cd03816 74 FAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHN 130 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCC
Confidence 0111 1111122445 9999985321 1 2444566789999875443
No 61
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.58 E-value=4e-05 Score=73.27 Aligned_cols=86 Identities=12% Similarity=0.030 Sum_probs=60.0
Q ss_pred cceecccCcc---cccCCCCcceEEe---cCC-cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAPQE---NDLGHPSIAWFLS---HCG-WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vpq~---~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.+++|+. .+|+.+++ +|. +.| ..++.||+++|+|+|+... ......+.+. +.|..++.
T Consensus 285 v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~----- 352 (405)
T TIGR03449 285 VRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDG----- 352 (405)
T ss_pred EEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCC-----
Confidence 4555777764 46888888 663 233 3589999999999999644 3344455552 67777743
Q ss_pred cCHHHHHHHHHHHhcCHHHHHHHHH
Q 042709 343 ITRQEIQINVKALLKNDGIKGNSLK 367 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~~~~a~~ 367 (398)
-+.+++.++|.++++|+..+++..+
T Consensus 353 ~d~~~la~~i~~~l~~~~~~~~~~~ 377 (405)
T TIGR03449 353 HDPADWADALARLLDDPRTRIRMGA 377 (405)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 3789999999999998765444433
No 62
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.58 E-value=4.6e-06 Score=78.56 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=65.3
Q ss_pred cccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhc
Q 042709 278 QENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLK 357 (398)
Q Consensus 278 q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~ 357 (398)
...+++.+++ +|+..|. .+.||+.+|+|+|..+...+++. +.+ -|.++.+. -++++|.+++.++++
T Consensus 268 ~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~------~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVG------TDKENITKAAKRLLT 333 (365)
T ss_pred HHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeC------CCHHHHHHHHHHHHh
Confidence 3456777777 9998764 47999999999999876555543 223 26666563 278999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 042709 358 NDGIKGNSLKLKEIARKILVEGGSSFRKFDSFIS 391 (398)
Q Consensus 358 ~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 391 (398)
|+..+++..+-...+ ++|+++.+.++.+.+
T Consensus 334 ~~~~~~~~~~~~~~~----g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 334 DPDEYKKMSNASNPY----GDGEASERIVEELLN 363 (365)
T ss_pred ChHHHHHhhhcCCCC----cCchHHHHHHHHHHh
Confidence 987666554333222 235666666655544
No 63
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.57 E-value=8.6e-05 Score=71.18 Aligned_cols=113 Identities=14% Similarity=0.145 Sum_probs=66.7
Q ss_pred cceecccCccc---ccCCCCcceEEecCCc------chHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSHCGW------NSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDEN 340 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItHgG~------~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~ 340 (398)
+.+.+|+|+.. +++.+++.++.+..+. +.+.|++.+|+|+|+-...+.. ....+ + +.|+.++.
T Consensus 286 v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~~--- 357 (412)
T PRK10307 286 VHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVEP--- 357 (412)
T ss_pred eEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeCC---
Confidence 45567887654 6778888555444332 2368999999999997543311 11122 2 46776743
Q ss_pred CCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 042709 341 GIITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKV 395 (398)
Q Consensus 341 ~~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 395 (398)
-+.+++.++|.++++|+..+++..+ ..++...+.=+....++++.+.+.+
T Consensus 358 --~d~~~la~~i~~l~~~~~~~~~~~~---~a~~~~~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 358 --ESVEALVAAIAALARQALLRPKLGT---VAREYAERTLDKENVLRQFIADIRG 407 (412)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHH---HHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3789999999999998754433322 2222222233334555555555443
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.57 E-value=4.1e-05 Score=71.47 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=58.6
Q ss_pred cceecccCcc---cccCCCCcceEEe---cCCcc-hHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAPQE---NDLGHPSIAWFLS---HCGWN-STMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vpq~---~lL~~~~~~~~It---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.+|+|+. .+++.+++.++-+ +.|.| ++.||+++|+|+|+-...+....... +. +.|...+.
T Consensus 246 V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~----- 316 (357)
T cd03795 246 VRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP----- 316 (357)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-----
Confidence 5667899875 4777788833333 23444 79999999999999665544443322 22 67777743
Q ss_pred cCHHHHHHHHHHHhcCHHHHH
Q 042709 343 ITRQEIQINVKALLKNDGIKG 363 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~~~ 363 (398)
-+.+++.++|.++++|++.++
T Consensus 317 ~d~~~~~~~i~~l~~~~~~~~ 337 (357)
T cd03795 317 GDPAALAEAIRRLLEDPELRE 337 (357)
T ss_pred CCHHHHHHHHHHHHHCHHHHH
Confidence 379999999999999985443
No 65
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.53 E-value=4.3e-05 Score=73.55 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=58.1
Q ss_pred cccCCCCcceEEec-----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHH
Q 042709 280 NDLGHPSIAWFLSH-----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKA 354 (398)
Q Consensus 280 ~lL~~~~~~~~ItH-----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~ 354 (398)
.+++.+++ ++.. +|..++.||+.+|+|+|+-|...++......+.+ -|+++... +.++|.++|.+
T Consensus 315 ~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~~-------d~~~La~~l~~ 384 (425)
T PRK05749 315 LLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQVE-------DAEDLAKAVTY 384 (425)
T ss_pred HHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEEC-------CHHHHHHHHHH
Confidence 34566665 4432 3444699999999999999988888888877766 37776642 68999999999
Q ss_pred HhcCHHHHHHHHHH
Q 042709 355 LLKNDGIKGNSLKL 368 (398)
Q Consensus 355 ~l~~~~~~~~a~~l 368 (398)
+++|++.+++..+-
T Consensus 385 ll~~~~~~~~m~~~ 398 (425)
T PRK05749 385 LLTDPDARQAYGEA 398 (425)
T ss_pred HhcCHHHHHHHHHH
Confidence 99998655444433
No 66
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.47 E-value=7.7e-07 Score=84.30 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=77.8
Q ss_pred cceecccCc-ccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchh-hHHHhhccceeeEEEecCCCCCCcCHHH
Q 042709 270 GKIVEWAPQ-ENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQH-HNRNYICDVWKIGVQLLPDENGIITRQE 347 (398)
Q Consensus 270 ~~v~~~vpq-~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~-~na~~~~~~~g~g~~l~~~~~~~~~~~~ 347 (398)
+.+.+|+++ ..+|+.+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|+.+ -++++
T Consensus 267 v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~-------~~~~~ 336 (382)
T PLN02605 267 VKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS-------ESPKE 336 (382)
T ss_pred eEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec-------CCHHH
Confidence 445577763 457888888 999999999999999999999998766675 78988888 4999755 27899
Q ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 042709 348 IQINVKALLKN-DGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQ 392 (398)
Q Consensus 348 l~~ai~~~l~~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 392 (398)
|.++|.++++| ++.+++ |++..++.. ...+..+.++.+.+.
T Consensus 337 la~~i~~ll~~~~~~~~~---m~~~~~~~~-~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 337 IARIVAEWFGDKSDELEA---MSENALKLA-RPEAVFDIVHDLHEL 378 (382)
T ss_pred HHHHHHHHHcCCHHHHHH---HHHHHHHhc-CCchHHHHHHHHHHH
Confidence 99999999988 654433 444444321 133334444444433
No 67
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.43 E-value=0.00023 Score=67.54 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=55.9
Q ss_pred cceecccCcc---cccCCCCcceEEec---CC-cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAPQE---NDLGHPSIAWFLSH---CG-WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vpq~---~lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.+++|+. .++..+++ ++.. -| ..++.||+.+|+|+|+.-. ......+.+ -+.|...+.
T Consensus 282 V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~-~~~g~~~~~----- 349 (392)
T cd03805 282 VIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVD-GETGFLCEP----- 349 (392)
T ss_pred EEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhcc-CCceEEeCC-----
Confidence 4566888876 46777777 6642 22 3578999999999999633 334444555 256766632
Q ss_pred cCHHHHHHHHHHHhcCHHHH
Q 042709 343 ITRQEIQINVKALLKNDGIK 362 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~~ 362 (398)
+.+++.++|.++++|++.+
T Consensus 350 -~~~~~a~~i~~l~~~~~~~ 368 (392)
T cd03805 350 -TPEEFAEAMLKLANDPDLA 368 (392)
T ss_pred -CHHHHHHHHHHHHhChHHH
Confidence 7899999999999987543
No 68
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.41 E-value=0.00032 Score=72.71 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=77.9
Q ss_pred cccCCCCEEEEEcCC---------------CccCHHHHHHHHHHHHhCC--CeEEEEeCccchHHHHHhhccc-------
Q 042709 6 QLSCRQPHVLVIPFP---------------ALGHVAPLMKLATKIAEHG--IDVTFVNTEFIHAKIIASMQGK------- 61 (398)
Q Consensus 6 ~~~m~~~~il~~~~~---------------~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~~~~~~~------- 61 (398)
|+..+++.|++++.- +.|+..=.++||++|+++| |+|.++|-......+.......
T Consensus 164 ~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~ 243 (1050)
T TIGR02468 164 QQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPR 243 (1050)
T ss_pred hcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccc
Confidence 455578899987653 2346666799999999998 8999998644322210000000
Q ss_pred -------ccCCCCCeEEEEcCCCCCCCCCCCCCH----HHHHhhchhhc--------------cCC-ccEEEecCcch--
Q 042709 62 -------AENSSSQIMLVSIPDGLDLQADEREDP----HKLMTEDPQAD--------------TEC-TACVIADISVG-- 113 (398)
Q Consensus 62 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--------------~~~-pD~vi~D~~~~-- 113 (398)
.....+++.++.+|.+-.......+.+ ..|...+...+ ... ||+|-+.....
T Consensus 244 ~~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~ 323 (1050)
T TIGR02468 244 SSENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGD 323 (1050)
T ss_pred ccccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHH
Confidence 002235888888886644222122322 22333222221 124 99999986654
Q ss_pred hHHHHHHHhCCceEEEcCCcH
Q 042709 114 WALEVAEAIGIARAAFVPFGP 134 (398)
Q Consensus 114 ~~~~~A~~lgiP~v~~~~~~~ 134 (398)
.+..+++.+|||.|....+..
T Consensus 324 aa~~L~~~lgVP~V~T~HSLg 344 (1050)
T TIGR02468 324 SAALLSGALNVPMVLTGHSLG 344 (1050)
T ss_pred HHHHHHHhhCCCEEEECccch
Confidence 688999999999988666543
No 69
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.39 E-value=5e-05 Score=69.55 Aligned_cols=108 Identities=12% Similarity=-0.015 Sum_probs=69.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch--HHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH--AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
|||++--.- .-|+.-+-.+.++|.++||+|.+.+-+... +.+... ++.+..+.... .. ..+.+.
T Consensus 1 MkIwiDi~~-p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y----------g~~y~~iG~~g-~~--~~~Kl~ 66 (335)
T PF04007_consen 1 MKIWIDITH-PAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY----------GIDYIVIGKHG-DS--LYGKLL 66 (335)
T ss_pred CeEEEECCC-chHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc----------CCCeEEEcCCC-CC--HHHHHH
Confidence 567755442 349999999999999999999998876433 223322 78888886322 11 111111
Q ss_pred HHH---hhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcH
Q 042709 90 KLM---TEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGP 134 (398)
Q Consensus 90 ~~~---~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~ 134 (398)
... ..+.+..++. ||++|+- ..+.+..+|..+|+|++.|.=...
T Consensus 67 ~~~~R~~~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 67 ESIERQYKLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCch
Confidence 111 1222222556 9999974 335688899999999999886543
No 70
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.37 E-value=3.5e-05 Score=71.21 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=55.1
Q ss_pred ceecccCc-ccccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCH
Q 042709 271 KIVEWAPQ-ENDLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITR 345 (398)
Q Consensus 271 ~v~~~vpq-~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~ 345 (398)
.+.++.+. ..++..+++ +|.- |..+++.||+++|+|+|+-. -......+.+. +.|...+. -+.
T Consensus 249 ~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~----~~~~~e~i~~~-~~g~~~~~-----~~~ 316 (353)
T cd03811 249 HFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATD----CPGPREILEDG-ENGLLVPV-----GDE 316 (353)
T ss_pred EEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcC----CCChHHHhcCC-CceEEECC-----CCH
Confidence 34455443 347777777 6632 34568999999999999853 34556667663 78888854 356
Q ss_pred HHH---HHHHHHHhcCHHHHHHHHH
Q 042709 346 QEI---QINVKALLKNDGIKGNSLK 367 (398)
Q Consensus 346 ~~l---~~ai~~~l~~~~~~~~a~~ 367 (398)
+.+ .+++..+++++..++++.+
T Consensus 317 ~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 317 AALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHH
Confidence 666 6677777777654444433
No 71
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.34 E-value=5e-05 Score=71.37 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=52.9
Q ss_pred cceecccCc--cc---ccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCC
Q 042709 270 GKIVEWAPQ--EN---DLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDEN 340 (398)
Q Consensus 270 ~~v~~~vpq--~~---lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~ 340 (398)
+.+.+|+++ .. .+..+++ +|.. |-..++.||+++|+|+|+.-. ......-+.+. ..|..++.
T Consensus 238 v~f~G~~~~~~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~~-~~G~lv~~--- 308 (359)
T PRK09922 238 IIWHGWQSQPWEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKPG-LNGELYTP--- 308 (359)
T ss_pred EEEecccCCcHHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccCC-CceEEECC---
Confidence 445566643 22 2334555 6643 335799999999999998641 22233344442 56777743
Q ss_pred CCcCHHHHHHHHHHHhcCHH
Q 042709 341 GIITRQEIQINVKALLKNDG 360 (398)
Q Consensus 341 ~~~~~~~l~~ai~~~l~~~~ 360 (398)
-+.+++.++|.++++|++
T Consensus 309 --~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 309 --GNIDEFVGKLNKVISGEV 326 (359)
T ss_pred --CCHHHHHHHHHHHHhCcc
Confidence 489999999999999986
No 72
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.31 E-value=0.00014 Score=67.93 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=51.4
Q ss_pred ccccCCCCcceEEecC----CcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHH
Q 042709 279 ENDLGHPSIAWFLSHC----GWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKA 354 (398)
Q Consensus 279 ~~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~ 354 (398)
..+++.+++ +|.-. ..+++.||+.+|+|+|+ .|...+...+.+ .|.. +.. -+.+++.++|.+
T Consensus 257 ~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~----~~~~~~~e~i~~-~g~~--~~~-----~~~~~~~~~i~~ 322 (360)
T cd04951 257 AAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVA----TDAGGVREVVGD-SGLI--VPI-----SDPEALANKIDE 322 (360)
T ss_pred HHHHHhhce--EEecccccCCChHHHHHHHcCCCEEE----ecCCChhhEecC-CceE--eCC-----CCHHHHHHHHHH
Confidence 457777777 65533 25689999999999997 455566666655 3544 432 378999999999
Q ss_pred Hhc-CHHHHHHHHH
Q 042709 355 LLK-NDGIKGNSLK 367 (398)
Q Consensus 355 ~l~-~~~~~~~a~~ 367 (398)
+++ ++.+++...+
T Consensus 323 ll~~~~~~~~~~~~ 336 (360)
T cd04951 323 ILKMSGEERDIIGA 336 (360)
T ss_pred HHhCCHHHHHHHHH
Confidence 984 5555554443
No 73
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.31 E-value=0.00018 Score=67.30 Aligned_cols=105 Identities=15% Similarity=0.081 Sum_probs=62.9
Q ss_pred EEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHH
Q 042709 13 HVLVIPF--PALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHK 90 (398)
Q Consensus 13 ~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
||+++.. +..|.-.-...+++.|.++||+|++++.........+.. ...++.+..++. .......
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~------~~~~~~~~~~~~-------~~~~~~~ 67 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEI------EKLGGKIYYIPA-------RKKNPLK 67 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHH------HHcCCeEEEecC-------CCccHHH
Confidence 4554444 467888889999999999999999999865442111110 001455544321 1222334
Q ss_pred HHhhchhhccCC-ccEEEecCcch--hHHHHHHHhCCceEEEc
Q 042709 91 LMTEDPQADTEC-TACVIADISVG--WALEVAEAIGIARAAFV 130 (398)
Q Consensus 91 ~~~~~~~~~~~~-pD~vi~D~~~~--~~~~~A~~lgiP~v~~~ 130 (398)
+...+...++.. ||+|.+-.... ....++..+++|.+.+.
T Consensus 68 ~~~~~~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~ 110 (358)
T cd03812 68 YFKKLYKLIKKNKYDIVHVHGSSASGFILLAAKKAGVKVRIAH 110 (358)
T ss_pred HHHHHHHHHhcCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEE
Confidence 444444444556 99999876543 34455666788876543
No 74
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.25 E-value=0.00056 Score=66.12 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=55.2
Q ss_pred ceecccCcccc---cCCC--CcceEEecC---C-cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCC
Q 042709 271 KIVEWAPQEND---LGHP--SIAWFLSHC---G-WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENG 341 (398)
Q Consensus 271 ~v~~~vpq~~l---L~~~--~~~~~ItHg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~ 341 (398)
.+.+++++.++ ++.+ +.++||... | ..++.||+++|+|+|+- |...+...+.+. ..|+.++.
T Consensus 320 ~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s----~~gg~~eiv~~~-~~G~lv~~---- 390 (439)
T TIGR02472 320 AYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVAT----DDGGPRDIIANC-RNGLLVDV---- 390 (439)
T ss_pred EecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEe----CCCCcHHHhcCC-CcEEEeCC----
Confidence 34455666554 4433 123387643 3 45999999999999985 444455555552 56777754
Q ss_pred CcCHHHHHHHHHHHhcCHHHH
Q 042709 342 IITRQEIQINVKALLKNDGIK 362 (398)
Q Consensus 342 ~~~~~~l~~ai~~~l~~~~~~ 362 (398)
-+++++.++|.++++|+..+
T Consensus 391 -~d~~~la~~i~~ll~~~~~~ 410 (439)
T TIGR02472 391 -LDLEAIASALEDALSDSSQW 410 (439)
T ss_pred -CCHHHHHHHHHHHHhCHHHH
Confidence 37899999999999997543
No 75
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.24 E-value=0.0014 Score=62.12 Aligned_cols=84 Identities=17% Similarity=0.245 Sum_probs=54.9
Q ss_pred cccCcc---cccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCC-CCCcCH
Q 042709 274 EWAPQE---NDLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDE-NGIITR 345 (398)
Q Consensus 274 ~~vpq~---~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~-~~~~~~ 345 (398)
+++++. .++..+++ +|.- |...++.||+++|+|+|+-. ...+...+++. +.|..++.++ +..-..
T Consensus 267 ~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~----~~~~~e~i~~~-~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 267 KMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASA----TGGIPEVVVDG-ETGFLVPPDNSDADGFQ 339 (388)
T ss_pred CCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeC----CCCHHHHhhCC-CceEEcCCCCCcccchH
Confidence 456643 35777887 7652 23457799999999999854 44455566663 6788886521 001113
Q ss_pred HHHHHHHHHHhcCHHHHHH
Q 042709 346 QEIQINVKALLKNDGIKGN 364 (398)
Q Consensus 346 ~~l~~ai~~~l~~~~~~~~ 364 (398)
+++.++|.++++|+..+++
T Consensus 340 ~~l~~~i~~l~~~~~~~~~ 358 (388)
T TIGR02149 340 AELAKAINILLADPELAKK 358 (388)
T ss_pred HHHHHHHHHHHhCHHHHHH
Confidence 8999999999998754433
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.23 E-value=0.00045 Score=64.51 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=54.4
Q ss_pred cccCcc---cccCCCCcceEEec------CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcC
Q 042709 274 EWAPQE---NDLGHPSIAWFLSH------CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIIT 344 (398)
Q Consensus 274 ~~vpq~---~lL~~~~~~~~ItH------gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~ 344 (398)
.|+|+. .+++.+++ +|.- |..+++.||+.+|+|+|+-+..+ ...+.+. +.|...+. -+
T Consensus 254 ~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~-----~d 320 (366)
T cd03822 254 RYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPP-----GD 320 (366)
T ss_pred CcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcC-----CC
Confidence 457753 57777777 6632 33458899999999999976543 3344453 67777743 36
Q ss_pred HHHHHHHHHHHhcCHHHHH
Q 042709 345 RQEIQINVKALLKNDGIKG 363 (398)
Q Consensus 345 ~~~l~~ai~~~l~~~~~~~ 363 (398)
.+++.++|.++++|++.++
T Consensus 321 ~~~~~~~l~~l~~~~~~~~ 339 (366)
T cd03822 321 PAALAEAIRRLLADPELAQ 339 (366)
T ss_pred HHHHHHHHHHHHcChHHHH
Confidence 8999999999999865443
No 77
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.21 E-value=0.0006 Score=63.60 Aligned_cols=99 Identities=13% Similarity=-0.113 Sum_probs=60.6
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCccchH-HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhcc
Q 042709 22 LGHVAPLMKLATKIAEHGIDVTFVNTEFIHA-KIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADT 100 (398)
Q Consensus 22 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (398)
.|--.-...|+++|.++||+|++++...... .+... ++++..++... . ...........+...++
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----------~~~~~~~~~~~--~--~~~~~~~~~~~l~~~~~ 75 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVAELEAE----------GSRHIKLPFIS--K--NPLRILLNVARLRRLIR 75 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhc----------CCeEEEccccc--c--chhhhHHHHHHHHHHHH
Confidence 5666778999999999999999998754322 22222 56666554211 0 00011122233344445
Q ss_pred CC-ccEEEecCcch--hHHHHHHHhCCceEEEcCCcH
Q 042709 101 EC-TACVIADISVG--WALEVAEAIGIARAAFVPFGP 134 (398)
Q Consensus 101 ~~-pD~vi~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 134 (398)
.. ||+|++..... .+..+++.+++|.+.......
T Consensus 76 ~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~ 112 (355)
T cd03819 76 EEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFY 112 (355)
T ss_pred HcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCch
Confidence 56 99999986543 455567788999987665443
No 78
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.20 E-value=0.00084 Score=68.05 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=46.2
Q ss_pred eEEec---CC-cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHh----cCHH
Q 042709 289 WFLSH---CG-WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALL----KNDG 360 (398)
Q Consensus 289 ~~ItH---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l----~~~~ 360 (398)
+||.- =| .-++.||+.+|+|+|+- +....+..+.+. .-|..++. -+++++.++|.+++ +|++
T Consensus 646 VfV~PS~~EpFGLvvLEAMAcGlPVVAT----~~GG~~EiV~dg-~tGfLVdp-----~D~eaLA~aL~~ll~kll~dp~ 715 (784)
T TIGR02470 646 IFVQPALYEAFGLTVLEAMTCGLPTFAT----RFGGPLEIIQDG-VSGFHIDP-----YHGEEAAEKIVDFFEKCDEDPS 715 (784)
T ss_pred EEEECCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHH
Confidence 37743 23 34899999999999984 555566667663 56888854 47899999998876 5765
Q ss_pred HHH
Q 042709 361 IKG 363 (398)
Q Consensus 361 ~~~ 363 (398)
.++
T Consensus 716 ~~~ 718 (784)
T TIGR02470 716 YWQ 718 (784)
T ss_pred HHH
Confidence 443
No 79
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.19 E-value=0.0011 Score=61.49 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=48.8
Q ss_pred ccccCCCCcceEEecCC----cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHH
Q 042709 279 ENDLGHPSIAWFLSHCG----WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKA 354 (398)
Q Consensus 279 ~~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~ 354 (398)
..+++.+++ +|..+. .+++.||+.+|+|+|+- |...+...+.+ .|..++. -+.+++.++|.+
T Consensus 263 ~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~~~---~g~~~~~-----~~~~~l~~~i~~ 328 (365)
T cd03807 263 PALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELVGD---TGFLVPP-----GDPEALAEAIEA 328 (365)
T ss_pred HHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHhhc---CCEEeCC-----CCHHHHHHHHHH
Confidence 357777777 776544 47999999999999985 44445455544 3444533 268999999999
Q ss_pred HhcCHH
Q 042709 355 LLKNDG 360 (398)
Q Consensus 355 ~l~~~~ 360 (398)
+++|++
T Consensus 329 l~~~~~ 334 (365)
T cd03807 329 LLADPA 334 (365)
T ss_pred HHhChH
Confidence 999874
No 80
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.17 E-value=0.00034 Score=64.67 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=52.4
Q ss_pred cceecccCccc---ccCCCCcceEEe--cCCc-chHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCc
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLS--HCGW-NSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGII 343 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~It--HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~ 343 (398)
+.+.+++++.+ +++.+++-++-+ +-|+ .++.||+++|+|+|+-. ...+...+.+. ..|...+ .
T Consensus 226 v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~----~~~~~e~i~~~-~~g~l~~----~-- 294 (335)
T cd03802 226 IEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFR----RGAVPEVVEDG-VTGFLVD----S-- 294 (335)
T ss_pred EEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeC----CCCchhheeCC-CcEEEeC----C--
Confidence 55668888754 577777722222 2343 48999999999999854 44444555551 3676663 2
Q ss_pred CHHHHHHHHHHHhcCH
Q 042709 344 TRQEIQINVKALLKND 359 (398)
Q Consensus 344 ~~~~l~~ai~~~l~~~ 359 (398)
.+++.++|.++++..
T Consensus 295 -~~~l~~~l~~l~~~~ 309 (335)
T cd03802 295 -VEELAAAVARADRLD 309 (335)
T ss_pred -HHHHHHHHHHHhccH
Confidence 899999999987653
No 81
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.16 E-value=0.00067 Score=63.46 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=59.5
Q ss_pred cceecccCccc---ccCCCCcceEEecCCc-----chHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSHCGW-----NSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENG 341 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItHgG~-----~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~ 341 (398)
+.+.+++|+.+ ++..+++ ++-+.-. +++.||+++|+|+|+-.... +...+.. .|..... .
T Consensus 250 V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~---~ 317 (363)
T cd04955 250 IIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV---G 317 (363)
T ss_pred EEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecC---c
Confidence 55668888764 4555666 6554433 47999999999999865432 2222222 2333322 1
Q ss_pred CcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 042709 342 IITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393 (398)
Q Consensus 342 ~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 393 (398)
+.+.++|.++++|++.+++ +++..++...+.-+-....+++++.+
T Consensus 318 ----~~l~~~i~~l~~~~~~~~~---~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 318 ----DDLASLLEELEADPEEVSA---MAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred ----hHHHHHHHHHHhCHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 1299999999998744333 33333332222334445555655543
No 82
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.16 E-value=0.00021 Score=67.17 Aligned_cols=82 Identities=15% Similarity=0.117 Sum_probs=59.4
Q ss_pred cceecccCccc---ccCCCCcceEEec----------CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEec
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSH----------CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLL 336 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItH----------gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~ 336 (398)
+.+.+++|+.+ +++.+++ +|.. |-.+++.||+++|+|+|+-+.. .++..+.+. +.|..++
T Consensus 247 v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~~~~ 319 (367)
T cd05844 247 VTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGLLVP 319 (367)
T ss_pred EEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeEEEC
Confidence 44557777654 4778887 6542 2356899999999999986543 456666663 7888774
Q ss_pred CCCCCCcCHHHHHHHHHHHhcCHHHHH
Q 042709 337 PDENGIITRQEIQINVKALLKNDGIKG 363 (398)
Q Consensus 337 ~~~~~~~~~~~l~~ai~~~l~~~~~~~ 363 (398)
. -+.+++.++|.++++|++.++
T Consensus 320 ~-----~d~~~l~~~i~~l~~~~~~~~ 341 (367)
T cd05844 320 E-----GDVAALAAALGRLLADPDLRA 341 (367)
T ss_pred C-----CCHHHHHHHHHHHHcCHHHHH
Confidence 3 478999999999999876443
No 83
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.14 E-value=0.00011 Score=69.15 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=52.2
Q ss_pred cccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH
Q 042709 280 NDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND 359 (398)
Q Consensus 280 ~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~ 359 (398)
.++..+++ +|+..| |.+.||+.+|+|+|+++.. |. +..+.+ -|+++.+.. +.++|.++|.++++|+
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~~------~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVGT------DPEAILAAIEKLLSDE 338 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecCC------CHHHHHHHHHHHhcCc
Confidence 45667777 999999 7888999999999998643 22 333445 377766531 5899999999999987
Q ss_pred HHHHH
Q 042709 360 GIKGN 364 (398)
Q Consensus 360 ~~~~~ 364 (398)
..+++
T Consensus 339 ~~~~~ 343 (363)
T cd03786 339 FAYSL 343 (363)
T ss_pred hhhhc
Confidence 54444
No 84
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.12 E-value=0.00022 Score=66.42 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=56.8
Q ss_pred cceecccCccc---ccCCCCcceEEe----------cCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEec
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLS----------HCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLL 336 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~It----------HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~ 336 (398)
+.+.+++|+.+ +++.+++ +|. -|..+++.||+++|+|+|+.+.. .....+.+ -..|...+
T Consensus 238 v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~-~~~g~~~~ 310 (355)
T cd03799 238 VTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVED-GETGLLVP 310 (355)
T ss_pred EEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhC-CCceEEeC
Confidence 45668887544 6667777 655 33457899999999999986542 23334444 24787774
Q ss_pred CCCCCCcCHHHHHHHHHHHhcCHHH
Q 042709 337 PDENGIITRQEIQINVKALLKNDGI 361 (398)
Q Consensus 337 ~~~~~~~~~~~l~~ai~~~l~~~~~ 361 (398)
. -+.+++.++|.++++|+..
T Consensus 311 ~-----~~~~~l~~~i~~~~~~~~~ 330 (355)
T cd03799 311 P-----GDPEALADAIERLLDDPEL 330 (355)
T ss_pred C-----CCHHHHHHHHHHHHhCHHH
Confidence 3 3889999999999998754
No 85
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.10 E-value=0.00084 Score=64.36 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=49.4
Q ss_pred cccCcccccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHH
Q 042709 274 EWAPQENDLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQ 349 (398)
Q Consensus 274 ~~vpq~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~ 349 (398)
++.+...++...++ ||.- +=..++.||+++|+|+|+.- .+.+ ..+.+. +-|... -+.+++.
T Consensus 290 G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~----~~~~-~~v~~~-~ng~~~-------~~~~~~a 354 (462)
T PLN02846 290 GRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCAN----HPSN-EFFKQF-PNCRTY-------DDGKGFV 354 (462)
T ss_pred CCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEec----CCCc-ceeecC-CceEec-------CCHHHHH
Confidence 55566668888877 8876 44568999999999999964 3332 333332 444333 1688999
Q ss_pred HHHHHHhcCH
Q 042709 350 INVKALLKND 359 (398)
Q Consensus 350 ~ai~~~l~~~ 359 (398)
++|.++|+++
T Consensus 355 ~ai~~~l~~~ 364 (462)
T PLN02846 355 RATLKALAEE 364 (462)
T ss_pred HHHHHHHccC
Confidence 9999999854
No 86
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.08 E-value=0.00022 Score=66.57 Aligned_cols=87 Identities=10% Similarity=0.130 Sum_probs=57.5
Q ss_pred cceecccCccc---ccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.+++|+.+ ++..+++ +|.- |..+++.||+++|+|+|+-... .....+.+ .|..+..
T Consensus 255 v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~~----- 320 (365)
T cd03809 255 VRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFDP----- 320 (365)
T ss_pred EEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeCC-----
Confidence 44568887654 5777777 5432 3456899999999999985432 22222222 3444533
Q ss_pred cCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 042709 343 ITRQEIQINVKALLKNDGIKGNSLKLKE 370 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~~~~a~~l~~ 370 (398)
-+.+++.++|.++++|+..+.+..+-+.
T Consensus 321 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 348 (365)
T cd03809 321 LDPEALAAAIERLLEDPALREELRERGL 348 (365)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3789999999999999876666555443
No 87
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.04 E-value=0.005 Score=58.10 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=52.4
Q ss_pred ccccCCCCcceEEe--c--CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHH
Q 042709 279 ENDLGHPSIAWFLS--H--CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKA 354 (398)
Q Consensus 279 ~~lL~~~~~~~~It--H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~ 354 (398)
..+++.+++ +|. + |-..++.||+++|+|+|+-.. ..+...+++. ..|..++. -+.+++.++|.+
T Consensus 267 ~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~-----~d~~~la~~i~~ 334 (374)
T TIGR03088 267 PALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP-----GDAVALARALQP 334 (374)
T ss_pred HHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC-----CCHHHHHHHHHH
Confidence 456778887 663 2 446699999999999999554 3455555552 56777743 478999999999
Q ss_pred HhcCHHHH
Q 042709 355 LLKNDGIK 362 (398)
Q Consensus 355 ~l~~~~~~ 362 (398)
+++|+..+
T Consensus 335 l~~~~~~~ 342 (374)
T TIGR03088 335 YVSDPAAR 342 (374)
T ss_pred HHhCHHHH
Confidence 99987543
No 88
>PLN00142 sucrose synthase
Probab=97.94 E-value=0.0032 Score=64.02 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=45.2
Q ss_pred eEEec---CCcc-hHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHH----hcCHH
Q 042709 289 WFLSH---CGWN-STMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKAL----LKNDG 360 (398)
Q Consensus 289 ~~ItH---gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~----l~~~~ 360 (398)
+||.- -|+| ++.||+.+|+|+|+- |.......+.+. .-|..++. -+++++.++|.++ ++|+.
T Consensus 669 VfVlPS~~EgFGLvvLEAMA~GlPVVAT----dvGG~~EIV~dG-~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp~ 738 (815)
T PLN00142 669 AFVQPALYEAFGLTVVEAMTCGLPTFAT----CQGGPAEIIVDG-VSGFHIDP-----YHGDEAANKIADFFEKCKEDPS 738 (815)
T ss_pred EEEeCCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHH
Confidence 37753 4555 899999999999985 444555666662 46888854 3678888887654 46775
Q ss_pred HHHH
Q 042709 361 IKGN 364 (398)
Q Consensus 361 ~~~~ 364 (398)
.+++
T Consensus 739 lr~~ 742 (815)
T PLN00142 739 YWNK 742 (815)
T ss_pred HHHH
Confidence 4443
No 89
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=0.002 Score=59.59 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=62.2
Q ss_pred EEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 042709 290 FLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLKLK 369 (398)
Q Consensus 290 ~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~l~ 369 (398)
++-+||+| ..|++++|+|++.=|+..-|.+.++++.+. |.|+.++ +.+.|.++++.+++|+..+++..+-+
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~ 397 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAG 397 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 46799998 679999999999999999999999999995 9999994 38899999999999886666554444
Q ss_pred HHHH
Q 042709 370 EIAR 373 (398)
Q Consensus 370 ~~~~ 373 (398)
..+-
T Consensus 398 ~~~v 401 (419)
T COG1519 398 LEFL 401 (419)
T ss_pred HHHH
Confidence 4443
No 90
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.90 E-value=0.0034 Score=59.84 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=64.2
Q ss_pred cceecccCc-ccccCCCCcceEE--ec--CCcc-hHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCc
Q 042709 270 GKIVEWAPQ-ENDLGHPSIAWFL--SH--CGWN-STMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGII 343 (398)
Q Consensus 270 ~~v~~~vpq-~~lL~~~~~~~~I--tH--gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~ 343 (398)
+.+.++++. ..+++.+++ +| ++ .|.+ .+.||+.+|+|+|+-+...+.. .+. -|.|+.+. -
T Consensus 282 V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~------~ 347 (397)
T TIGR03087 282 VTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA------A 347 (397)
T ss_pred eEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC------C
Confidence 445567764 346777787 65 22 3544 6999999999999987543221 122 25676663 3
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 042709 344 TRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393 (398)
Q Consensus 344 ~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 393 (398)
+++++.++|.++++|++.+++. ++..++.+.+.-+-...++.+.+.+
T Consensus 348 ~~~~la~ai~~ll~~~~~~~~~---~~~ar~~v~~~fsw~~~~~~~~~~l 394 (397)
T TIGR03087 348 DPADFAAAILALLANPAEREEL---GQAARRRVLQHYHWPRNLARLDALL 394 (397)
T ss_pred CHHHHHHHHHHHHcCHHHHHHH---HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 7899999999999997644333 3333222222333344455554443
No 91
>PLN02275 transferase, transferring glycosyl groups
Probab=97.83 E-value=0.0089 Score=56.40 Aligned_cols=115 Identities=8% Similarity=-0.159 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGI-DVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
+-++.++..+-.|.-..+..++..|+++|| +|++++.+......+. ....++.+..++. .+..........
T Consensus 4 ~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~-------~~~~~v~v~r~~~-~~~~~~~~~~~~ 75 (371)
T PLN02275 4 RGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPAL-------LNHPSIHIHLMVQ-PRLLQRLPRVLY 75 (371)
T ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHH-------hcCCcEEEEECCC-cccccccccchH
Confidence 445666666888889999999999999986 7999987554322111 1124688888764 111110111111
Q ss_pred ------HH---Hhhchhh--ccCC-ccEEEecCcch-----hHHHHHHHhCCceEEEcCCc
Q 042709 90 ------KL---MTEDPQA--DTEC-TACVIADISVG-----WALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 90 ------~~---~~~~~~~--~~~~-pD~vi~D~~~~-----~~~~~A~~lgiP~v~~~~~~ 133 (398)
.. +..+... .+.. ||+|++-.... .+..++...++|++..+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 136 (371)
T PLN02275 76 ALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNF 136 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 10 0111111 1445 99999853221 34456677899998765543
No 92
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.79 E-value=0.012 Score=55.61 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=59.4
Q ss_pred cccCCCCcceEEecC---C-cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHH
Q 042709 280 NDLGHPSIAWFLSHC---G-WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKAL 355 (398)
Q Consensus 280 ~lL~~~~~~~~ItHg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~ 355 (398)
.+++.+++ |+.-. | ..++.||+.+|+|+|+-.. ......+... ..|+..+ +.+++.++|.++
T Consensus 269 ~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~----~~~~~~i~~~-~~g~~~~-------~~~~~a~~i~~l 334 (372)
T cd03792 269 ALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPV----GGIPLQIEDG-ETGFLVD-------TVEEAAVRILYL 334 (372)
T ss_pred HHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCC----CCchhhcccC-CceEEeC-------CcHHHHHHHHHH
Confidence 45677777 87543 2 3489999999999998643 3334445442 5666553 356788899999
Q ss_pred hcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 356 LKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 356 l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
++|++.++...+-+... ..+.-+-...++++++.++
T Consensus 335 l~~~~~~~~~~~~a~~~---~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 335 LRDPELRRKMGANAREH---VRENFLITRHLKDYLYLIS 370 (372)
T ss_pred HcCHHHHHHHHHHHHHH---HHHHcCHHHHHHHHHHHHH
Confidence 99876554433332222 1123344555556655544
No 93
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=97.78 E-value=6.3e-05 Score=58.58 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=48.2
Q ss_pred cccCc-ccccCCCCcceEEecCCcchHHHHHhcCCceecccC----ccchhhHHHhhccceeeEEEec
Q 042709 274 EWAPQ-ENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPS----FADQHHNRNYICDVWKIGVQLL 336 (398)
Q Consensus 274 ~~vpq-~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~~~~~~g~g~~l~ 336 (398)
+|-|- .+..+.+++ +|.|+|.||++|.|..|+|.++++- -..|-.-|..+++ .|.=..-.
T Consensus 69 ~f~psl~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~ 133 (170)
T KOG3349|consen 69 DFSPSLTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCT 133 (170)
T ss_pred ecCccHHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEee
Confidence 55554 556666777 9999999999999999999999985 4679999999988 47665553
No 94
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.74 E-value=0.004 Score=60.85 Aligned_cols=67 Identities=7% Similarity=-0.015 Sum_probs=45.6
Q ss_pred cccCCCCcceEEec---CCcc-hHHHHHhcCCceecccCccchhhHHHhhccc-----eeeEEEecCCCCCCcCHHHHHH
Q 042709 280 NDLGHPSIAWFLSH---CGWN-STMEGLSMGVPFLCWPSFADQHHNRNYICDV-----WKIGVQLLPDENGIITRQEIQI 350 (398)
Q Consensus 280 ~lL~~~~~~~~ItH---gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~-----~g~g~~l~~~~~~~~~~~~l~~ 350 (398)
.+++.+++ +|.- -|.| +.+||+.+|+|.|+-... .....+.+. -+.|+.++. -+++++.+
T Consensus 361 ~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~g----g~~e~v~~~~~~~~~~~G~l~~~-----~d~~~la~ 429 (473)
T TIGR02095 361 LIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTG----GLADTVVDGDPEAESGTGFLFEE-----YDPGALLA 429 (473)
T ss_pred HHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCC----CccceEecCCCCCCCCceEEeCC-----CCHHHHHH
Confidence 36677777 7743 2444 788999999999985442 223333320 167877743 47899999
Q ss_pred HHHHHhc
Q 042709 351 NVKALLK 357 (398)
Q Consensus 351 ai~~~l~ 357 (398)
+|.++++
T Consensus 430 ~i~~~l~ 436 (473)
T TIGR02095 430 ALSRALR 436 (473)
T ss_pred HHHHHHH
Confidence 9999987
No 95
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.0028 Score=58.12 Aligned_cols=100 Identities=15% Similarity=0.179 Sum_probs=75.1
Q ss_pred cccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHH
Q 042709 274 EWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVK 353 (398)
Q Consensus 274 ~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~ 353 (398)
++.+...++.++.+ ++|-.| |-.-||-..|+|.+++=...++|. +++. |.-+.+. .+.+.|.+++.
T Consensus 271 ~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lvg------~~~~~i~~~~~ 336 (383)
T COG0381 271 GYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILVG------TDEENILDAAT 336 (383)
T ss_pred chHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEeC------ccHHHHHHHHH
Confidence 77889999999988 999887 456799999999999988888886 3332 6655554 47799999999
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 042709 354 ALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFIS 391 (398)
Q Consensus 354 ~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 391 (398)
++++++++.++......-..+ |.++.+.++.+..
T Consensus 337 ~ll~~~~~~~~m~~~~npYgd----g~as~rIv~~l~~ 370 (383)
T COG0381 337 ELLEDEEFYERMSNAKNPYGD----GNASERIVEILLN 370 (383)
T ss_pred HHhhChHHHHHHhcccCCCcC----cchHHHHHHHHHH
Confidence 999998888777665555443 4455555544443
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.52 E-value=0.073 Score=54.07 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=56.9
Q ss_pred cceecccCc-ccccCCCCcceEEe---cCC-cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcC
Q 042709 270 GKIVEWAPQ-ENDLGHPSIAWFLS---HCG-WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIIT 344 (398)
Q Consensus 270 ~~v~~~vpq-~~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~ 344 (398)
+.+.+|.+. ..+|+.+++ ||. +.| .+++.||+.+|+|+|+-.. ..+...+.+. ..|+.++. +..+
T Consensus 576 V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~dg-~~GlLv~~---~d~~ 645 (694)
T PRK15179 576 ILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQEG-VTGLTLPA---DTVT 645 (694)
T ss_pred EEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccCC-CCEEEeCC---CCCC
Confidence 444466543 346777777 664 445 4589999999999999644 3455556552 46888865 4456
Q ss_pred HHHHHHHHHHHhc----CHHHHHHHHHH
Q 042709 345 RQEIQINVKALLK----NDGIKGNSLKL 368 (398)
Q Consensus 345 ~~~l~~ai~~~l~----~~~~~~~a~~l 368 (398)
.+++.+++.+++. ++.+++++++.
T Consensus 646 ~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 646 APDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred hHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 6677777766654 45666655443
No 97
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.52 E-value=0.015 Score=56.68 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=45.3
Q ss_pred cccCCCCcceEEec---CCcc-hHHHHHhcCCceecccCccchhhHHHhhccc-----eeeEEEecCCCCCCcCHHHHHH
Q 042709 280 NDLGHPSIAWFLSH---CGWN-STMEGLSMGVPFLCWPSFADQHHNRNYICDV-----WKIGVQLLPDENGIITRQEIQI 350 (398)
Q Consensus 280 ~lL~~~~~~~~ItH---gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~-----~g~g~~l~~~~~~~~~~~~l~~ 350 (398)
.+++.+++ ||.- -|+| +.+||+.+|+|.|+-... .....+.+. -+.|+.++. -+++++.+
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~g----G~~e~v~~~~~~~~~~~G~lv~~-----~d~~~la~ 420 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTG----GLADTVIDYNPEDGEATGFVFDD-----FNAEDLLR 420 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCC----CccceeecCCCCCCCCceEEeCC-----CCHHHHHH
Confidence 46777777 7753 3554 888999999999886432 222222220 167887754 47899999
Q ss_pred HHHHHhc
Q 042709 351 NVKALLK 357 (398)
Q Consensus 351 ai~~~l~ 357 (398)
+|.++++
T Consensus 421 ~i~~~l~ 427 (466)
T PRK00654 421 ALRRALE 427 (466)
T ss_pred HHHHHHH
Confidence 9999886
No 98
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.50 E-value=0.029 Score=53.86 Aligned_cols=77 Identities=21% Similarity=0.160 Sum_probs=50.1
Q ss_pred cceecccCccc---ccCCCCcceEEec---CCc-chHHHHHhcCCceecccCccchhhHHHhhc---cceeeEEEecCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSH---CGW-NSTMEGLSMGVPFLCWPSFADQHHNRNYIC---DVWKIGVQLLPDE 339 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItH---gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~---~~~g~g~~l~~~~ 339 (398)
+.+.+++|+.+ +|+.+++ +|+- -|. -++.||+++|+|.|+.-..+.- ...++ +. ..|...
T Consensus 307 V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~---- 376 (419)
T cd03806 307 VEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA---- 376 (419)
T ss_pred EEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe----
Confidence 44557777654 6777787 6542 122 3789999999999985432211 11222 32 466654
Q ss_pred CCCcCHHHHHHHHHHHhcCH
Q 042709 340 NGIITRQEIQINVKALLKND 359 (398)
Q Consensus 340 ~~~~~~~~l~~ai~~~l~~~ 359 (398)
. +++++.++|.++++++
T Consensus 377 -~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 -S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred -C--CHHHHHHHHHHHHhCC
Confidence 2 7899999999999864
No 99
>PLN02949 transferase, transferring glycosyl groups
Probab=97.45 E-value=0.099 Score=50.76 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=47.6
Q ss_pred cceecccCccc---ccCCCCcceEEe---cCCcc-hHHHHHhcCCceecccCccchhhHHHhhcc-cee-eEEEecCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLS---HCGWN-STMEGLSMGVPFLCWPSFADQHHNRNYICD-VWK-IGVQLLPDEN 340 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~It---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~-~~g-~g~~l~~~~~ 340 (398)
+.+.+++|+.+ +|+.+++ +|+ +-|+| ++.||+++|+|.|+....+--. ..+.+ .-| .|...
T Consensus 337 V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~----- 406 (463)
T PLN02949 337 VEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA----- 406 (463)
T ss_pred EEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC-----
Confidence 44557777554 5777777 663 33444 7999999999999975432100 01111 001 23222
Q ss_pred CCcCHHHHHHHHHHHhcC
Q 042709 341 GIITRQEIQINVKALLKN 358 (398)
Q Consensus 341 ~~~~~~~l~~ai~~~l~~ 358 (398)
-+.+++.++|.+++++
T Consensus 407 --~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 407 --TTVEEYADAILEVLRM 422 (463)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 1789999999999984
No 100
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.24 E-value=0.0026 Score=52.67 Aligned_cols=86 Identities=21% Similarity=0.240 Sum_probs=62.3
Q ss_pred cceecccC---cccccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 270 GKIVEWAP---QENDLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 270 ~~v~~~vp---q~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+.+.++++ ...++..+++ +|+. |...++.||+.+|+|+|+ .|...+...+.+ .+.|..++.
T Consensus 75 i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~~~-~~~g~~~~~----- 142 (172)
T PF00534_consen 75 IIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEIIND-GVNGFLFDP----- 142 (172)
T ss_dssp EEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHSGT-TTSEEEEST-----
T ss_pred cccccccccccccccccccee--ccccccccccccccccccccccceee----ccccCCceeecc-ccceEEeCC-----
Confidence 44556666 3447777887 7776 667799999999999998 466667777777 367988854
Q ss_pred cCHHHHHHHHHHHhcCHHHHHHHHH
Q 042709 343 ITRQEIQINVKALLKNDGIKGNSLK 367 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~~~~~a~~ 367 (398)
.+.+++.++|.++++|++.+++..+
T Consensus 143 ~~~~~l~~~i~~~l~~~~~~~~l~~ 167 (172)
T PF00534_consen 143 NDIEELADAIEKLLNDPELRQKLGK 167 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3999999999999998754444433
No 101
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.19 E-value=0.12 Score=48.91 Aligned_cols=76 Identities=16% Similarity=0.052 Sum_probs=46.5
Q ss_pred cceecccCccc---ccCCCCcceEE------ecCCc-chHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFL------SHCGW-NSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDE 339 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~I------tHgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~ 339 (398)
+...+++|+.+ .++++++.++- +.++. +.+.|++++|+|+|+.++ + ...+. .+.++...
T Consensus 256 V~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~----~---~~~~~-~~~~~~~~--- 324 (373)
T cd04950 256 VHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL----P---EVRRY-EDEVVLIA--- 324 (373)
T ss_pred EEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc----H---HHHhh-cCcEEEeC---
Confidence 34457777555 46677773321 22332 458999999999998653 2 22222 13233332
Q ss_pred CCCcCHHHHHHHHHHHhcCH
Q 042709 340 NGIITRQEIQINVKALLKND 359 (398)
Q Consensus 340 ~~~~~~~~l~~ai~~~l~~~ 359 (398)
-+.+++.++|.+++.++
T Consensus 325 ---~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 325 ---DDPEEFVAAIEKALLED 341 (373)
T ss_pred ---CCHHHHHHHHHHHHhcC
Confidence 27999999999987554
No 102
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.15 E-value=0.0076 Score=57.66 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=79.2
Q ss_pred EEEEEeCCcccCCHHHHHHhhc-------cceecccCccc---ccCCCCcceEEecCC----cchHHHHHhcCCceeccc
Q 042709 248 VTYVAFGRFSILGQEQLEQLAL-------GKIVEWAPQEN---DLGHPSIAWFLSHCG----WNSTMEGLSMGVPFLCWP 313 (398)
Q Consensus 248 vVyvs~Gs~~~~~~~~~~~~~~-------~~v~~~vpq~~---lL~~~~~~~~ItHgG----~~s~~eal~~GvP~v~~P 313 (398)
+.++-.|... ..+.+.+.+. +...+|+++.+ ++..+++.+||...- .++++||+++|+|+|+-
T Consensus 264 l~~~iiG~g~--~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas- 340 (407)
T cd04946 264 IKWTHIGGGP--LEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIAT- 340 (407)
T ss_pred EEEEEEeCch--HHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeC-
Confidence 5555566432 2333444432 45668998764 444444545876543 45899999999999984
Q ss_pred CccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 042709 314 SFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFI 390 (398)
Q Consensus 314 ~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 390 (398)
|.......+.+ -+.|..+.. .-+.+++.++|.++++|++.++ +|++..++.+.+.=+.....++|+
T Consensus 341 ---~vgg~~e~i~~-~~~G~l~~~----~~~~~~la~~I~~ll~~~~~~~---~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 341 ---NVGGTPEIVDN-GGNGLLLSK----DPTPNELVSSLSKFIDNEEEYQ---TMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred ---CCCCcHHHhcC-CCcEEEeCC----CCCHHHHHHHHHHHHhCHHHHH---HHHHHHHHHHHHHcCHHHhHHHhc
Confidence 44455666666 247887742 3478999999999999875443 334444443333444455555553
No 103
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.11 E-value=0.0081 Score=56.46 Aligned_cols=114 Identities=12% Similarity=-0.024 Sum_probs=63.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCccchH-H----HHHhhcccccCCCCCeEEEE-cCCCCCCC--C
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEH-GIDVTFVNTEFIHA-K----IIASMQGKAENSSSQIMLVS-IPDGLDLQ--A 82 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~-~----v~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~ 82 (398)
+||+++ ++++-.+.=+-.+.++|.+. +.++.++.+....+ . ..... ..++...+ ++-.+... .
T Consensus 1 ~ki~~v-~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 72 (365)
T TIGR03568 1 KKICVV-TGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIE-------KDGFDIDEKIEILLDSDSNA 72 (365)
T ss_pred CeEEEE-EecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHH-------HcCCCCCCccccccCCCCCC
Confidence 356544 45777888888888999884 78888777754321 1 11110 01232211 11011110 0
Q ss_pred CCCCCHHHHHhhchhhccCC-ccEEEecC--cch-hHHHHHHHhCCceEEEcCCc
Q 042709 83 DEREDPHKLMTEDPQADTEC-TACVIADI--SVG-WALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-pD~vi~D~--~~~-~~~~~A~~lgiP~v~~~~~~ 133 (398)
.........+..+.+.+.+. ||+||+-. +.. .+..+|..+|||++.+..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~ 127 (365)
T TIGR03568 73 GMAKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGE 127 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCc
Confidence 00112233444555555666 99998865 322 78999999999999766553
No 104
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.02 E-value=0.0061 Score=57.75 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=68.2
Q ss_pred cceecccCccc---ccCCCCcceEEec----CCc-chHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCC
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSH----CGW-NSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENG 341 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItH----gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~ 341 (398)
+.+.+++|+.+ +++.+++ +|.. .|. .++.||+.+|+|+|+-.. ..+...+.+. ..|..+. .
T Consensus 259 v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~~-~~G~~l~----~ 327 (380)
T PRK15484 259 CIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLEG-ITGYHLA----E 327 (380)
T ss_pred EEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhcccC-CceEEEe----C
Confidence 45557777544 4777888 7653 333 577899999999999654 3344455552 5676442 2
Q ss_pred CcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 342 IITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 342 ~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
..+.+++.++|.++++|++.+ ++++..++...+.=+-....+++.+.+.
T Consensus 328 ~~d~~~la~~I~~ll~d~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 328 PMTSDSIISDINRTLADPELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred CCCHHHHHHHHHHHHcCHHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 347999999999999998643 3344433322223333444555555543
No 105
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.90 E-value=0.078 Score=53.00 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=48.7
Q ss_pred ecccCcc-cccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHH
Q 042709 273 VEWAPQE-NDLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQE 347 (398)
Q Consensus 273 ~~~vpq~-~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~ 347 (398)
.++.++. .+++..++ ||.- |=..++.||+++|+|+|+.-..+ +.. +.+ |.+..+. -+.++
T Consensus 606 LG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG----~e~-V~~--g~nGll~------~D~Ea 670 (794)
T PLN02501 606 LKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPS----NEF-FRS--FPNCLTY------KTSED 670 (794)
T ss_pred cCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCC----Cce-Eee--cCCeEec------CCHHH
Confidence 3555544 37877777 7753 33558999999999999975543 221 222 3333332 26899
Q ss_pred HHHHHHHHhcCHH
Q 042709 348 IQINVKALLKNDG 360 (398)
Q Consensus 348 l~~ai~~~l~~~~ 360 (398)
+.++|.++|+|+.
T Consensus 671 fAeAI~~LLsd~~ 683 (794)
T PLN02501 671 FVAKVKEALANEP 683 (794)
T ss_pred HHHHHHHHHhCch
Confidence 9999999999875
No 106
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.87 E-value=0.017 Score=45.87 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=65.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLM 92 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (398)
|||+++.....| ...+++.|.++||+|++++.....+..... .++.+..++.+.. ..-.....
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~---------~~i~~~~~~~~~k----~~~~~~~~- 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII---------EGIKVIRLPSPRK----SPLNYIKY- 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh---------CCeEEEEecCCCC----ccHHHHHH-
Confidence 577777655555 557899999999999999996554333322 3788888853321 11111122
Q ss_pred hhchhhccCC-ccEEEecCcch---hHHHHHHHhC-CceEEEcC
Q 042709 93 TEDPQADTEC-TACVIADISVG---WALEVAEAIG-IARAAFVP 131 (398)
Q Consensus 93 ~~~~~~~~~~-pD~vi~D~~~~---~~~~~A~~lg-iP~v~~~~ 131 (398)
..+...++.. ||+|.+-.... .+..++...+ +|.+....
T Consensus 64 ~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 64 FRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 2444455777 99998776543 3455667788 88886444
No 107
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=96.81 E-value=0.0036 Score=59.71 Aligned_cols=84 Identities=18% Similarity=0.159 Sum_probs=38.4
Q ss_pred eecccCcc---cccCCCCcceEE---ecCCcchHHHHHhcCCceecccCccc-hhhHHHhhccceeeEEEecCCCCCCcC
Q 042709 272 IVEWAPQE---NDLGHPSIAWFL---SHCGWNSTMEGLSMGVPFLCWPSFAD-QHHNRNYICDVWKIGVQLLPDENGIIT 344 (398)
Q Consensus 272 v~~~vpq~---~lL~~~~~~~~I---tHgG~~s~~eal~~GvP~v~~P~~~D-Q~~na~~~~~~~g~g~~l~~~~~~~~~ 344 (398)
+.++.|+. ..+...++ ++ ..+|.+|++|||+.|||+|.+|--.= ...-+..+.. +|+.-.+- -+
T Consensus 346 f~~~~~~~ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA------~s 416 (468)
T PF13844_consen 346 FSPVAPREEHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA------DS 416 (468)
T ss_dssp EEE---HHHHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-------SS
T ss_pred EcCCCCHHHHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC------CC
Confidence 44555543 33444555 64 56799999999999999999995321 2222233333 45553332 24
Q ss_pred HHHHHHHHHHHhcCHHHHHH
Q 042709 345 RQEIQINVKALLKNDGIKGN 364 (398)
Q Consensus 345 ~~~l~~ai~~~l~~~~~~~~ 364 (398)
.++-.+.--++-+|++++++
T Consensus 417 ~~eYv~~Av~La~D~~~l~~ 436 (468)
T PF13844_consen 417 EEEYVEIAVRLATDPERLRA 436 (468)
T ss_dssp HHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 55444444466667654433
No 108
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.81 E-value=0.011 Score=56.56 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=70.7
Q ss_pred cceecccCccc---ccCCCCcceEEec---------CCc-chHHHHHhcCCceecccCccchhhHHHhhccceeeEEEec
Q 042709 270 GKIVEWAPQEN---DLGHPSIAWFLSH---------CGW-NSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLL 336 (398)
Q Consensus 270 ~~v~~~vpq~~---lL~~~~~~~~ItH---------gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~ 336 (398)
+.+.+|+|+.+ ++..+++ ||.- -|. ++++||+.+|+|+|+-.. ......+.+. ..|..++
T Consensus 281 V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v~~~-~~G~lv~ 353 (406)
T PRK15427 281 VEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELVEAD-KSGWLVP 353 (406)
T ss_pred EEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhhcCC-CceEEeC
Confidence 55668998765 6777887 6642 244 568999999999998543 3344455552 5787775
Q ss_pred CCCCCCcCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 337 PDENGIITRQEIQINVKALLK-NDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 337 ~~~~~~~~~~~l~~ai~~~l~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
. -+.+++.++|.++++ |++.+++ +++..++.+.+.=+.....+++.+.+.
T Consensus 354 ~-----~d~~~la~ai~~l~~~d~~~~~~---~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 354 E-----NDAQALAQRLAAFSQLDTDELAP---VVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred C-----CCHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3 379999999999999 8754332 333333322223444555556655544
No 109
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.69 E-value=0.0021 Score=59.54 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=65.6
Q ss_pred ccccCCCCcceEEecCCcchHHHHHhcCCceecccC--ccchhhHHHhhc---cceeeEEEecC---------C-CCCCc
Q 042709 279 ENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPS--FADQHHNRNYIC---DVWKIGVQLLP---------D-ENGII 343 (398)
Q Consensus 279 ~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~--~~DQ~~na~~~~---~~~g~g~~l~~---------~-~~~~~ 343 (398)
.+++..+++ +|+-+|..|+ |+..+|+|||+ ++ ..=|..||+++. . .|++--+-. + -.+..
T Consensus 230 ~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~ 304 (347)
T PRK14089 230 HKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFV 304 (347)
T ss_pred HHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccC
Confidence 357778888 9999999999 99999999988 55 456889999997 4 354444410 0 12568
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 042709 344 TRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKF 386 (398)
Q Consensus 344 ~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 386 (398)
|++.|.+++.+ . .+++.++....+++..++ |++.+..
T Consensus 305 t~~~la~~i~~-~----~~~~~~~~~~~l~~~l~~-~a~~~~A 341 (347)
T PRK14089 305 TVENLLKAYKE-M----DREKFFKKSKELREYLKH-GSAKNVA 341 (347)
T ss_pred CHHHHHHHHHH-H----HHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 99999999977 2 344455545555544322 4444443
No 110
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.62 E-value=0.082 Score=52.04 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=58.9
Q ss_pred ccccCCCCcceEEecCCcchHHHHHhcCCceecc-cCccchhhHHHhhcc----cee-----eEEEecCC--C-CCCcCH
Q 042709 279 ENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCW-PSFADQHHNRNYICD----VWK-----IGVQLLPD--E-NGIITR 345 (398)
Q Consensus 279 ~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~~~~----~~g-----~g~~l~~~--~-~~~~~~ 345 (398)
.++++.+++ .+.-+|. -+.|+...|+|||++ -...=....++++.+ ..+ +|..+-++ + .+..|+
T Consensus 483 ~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tp 559 (608)
T PRK01021 483 YELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQP 559 (608)
T ss_pred HHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCH
Confidence 456777777 7777765 467999999999874 223333344555543 001 11111110 0 146789
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHH
Q 042709 346 QEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFR 384 (398)
Q Consensus 346 ~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 384 (398)
+.|.+++ ++|+|+..+++.++=-+++++..++|-..-+
T Consensus 560 e~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg~~~~~~~ 597 (608)
T PRK01021 560 EEVAAAL-DILKTSQSKEKQKDACRDLYQAMNESASTMK 597 (608)
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 9999997 8888876555555544444554433444333
No 111
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=96.53 E-value=0.023 Score=48.05 Aligned_cols=116 Identities=16% Similarity=0.076 Sum_probs=66.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCC----CCCC
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQAD----ERED 87 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 87 (398)
||||+.---+. +---+..|+++|.+.||+|+++.|.....-..... .....++......+...... -...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~si-----t~~~pl~~~~~~~~~~~~~~~~~~v~GT 74 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSI-----TLHKPLRVTEVEPGHDPGGVEAYAVSGT 74 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS-------SSSEEEEEEEE-TTCCSTTEEEEESS-
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceee-----cCCCCeEEEEEEecccCCCCCEEEEcCc
Confidence 67777776655 55568899999988889999999988765432221 22234555444211111110 2233
Q ss_pred HHHH-HhhchhhccCC-ccEEEecC----------cch---hHHHHHHHhCCceEEEcCCc
Q 042709 88 PHKL-MTEDPQADTEC-TACVIADI----------SVG---WALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 88 ~~~~-~~~~~~~~~~~-pD~vi~D~----------~~~---~~~~~A~~lgiP~v~~~~~~ 133 (398)
+... .-.+...+.+. ||+||+-. +++ ++..-|...|||.+.++...
T Consensus 75 PaDcv~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 75 PADCVKLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp HHHHHHHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred HHHHHHHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 3332 22333334556 99999743 322 45667778899999988644
No 112
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.39 E-value=0.0081 Score=48.56 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhc--cCC-
Q 042709 26 APLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQAD--TEC- 102 (398)
Q Consensus 26 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 102 (398)
.-+..|+++|.++||+|+++++......-+. ...++.+..++-........ ...+...+.+.+ ...
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 73 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEE--------EEDGVRVHRLPLPRRPWPLR---LLRFLRRLRRLLAARRER 73 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SE--------EETTEEEEEE--S-SSSGGG---HCCHHHHHHHHCHHCT--
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCccccc--------ccCCceEEeccCCccchhhh---hHHHHHHHHHHHhhhccC
Confidence 3467899999999999999997665543211 11368887776322111001 111233334444 556
Q ss_pred ccEEEecCcch-hHHHHHH-HhCCceEEEcC
Q 042709 103 TACVIADISVG-WALEVAE-AIGIARAAFVP 131 (398)
Q Consensus 103 pD~vi~D~~~~-~~~~~A~-~lgiP~v~~~~ 131 (398)
||+|.+..... ....+++ ..++|.+....
T Consensus 74 ~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 74 PDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp -SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred CeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 99999987543 3334444 78999987543
No 113
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.25 E-value=0.013 Score=54.36 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=60.4
Q ss_pred HHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHH
Q 042709 299 TMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND--GIKGNSLKLKEIARKIL 376 (398)
Q Consensus 299 ~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~--~~~~~a~~l~~~~~~~~ 376 (398)
+.+.+++|+|+|+. ++...+..+++. ++|+.++ +.+++.+++..+.+++ .+++|+++++++++.
T Consensus 253 ~~~ymA~G~PVI~~----~~~~~~~~V~~~-~~G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~-- 318 (333)
T PRK09814 253 LSLYLAAGLPVIVW----SKAAIADFIVEN-GLGFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLRN-- 318 (333)
T ss_pred HHHHHHCCCCEEEC----CCccHHHHHHhC-CceEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc--
Confidence 77789999999984 567778888884 9999983 5678999998865433 588999999999986
Q ss_pred hcCCchHHHHHHHHH
Q 042709 377 VEGGSSFRKFDSFIS 391 (398)
Q Consensus 377 ~~~g~~~~~~~~~~~ 391 (398)
|.--..++++.+.
T Consensus 319 --g~~~~~~~~~~~~ 331 (333)
T PRK09814 319 --GYFTKKALVDAIK 331 (333)
T ss_pred --chhHHHHHHHHHh
Confidence 5555677776654
No 114
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.0093 Score=45.89 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=43.3
Q ss_pred ccCCCCcceEEecCCcchHHHHHhcCCceecccCcc--------chhhHHHhhccceeeEEEecC
Q 042709 281 DLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFA--------DQHHNRNYICDVWKIGVQLLP 337 (398)
Q Consensus 281 lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~--------DQ~~na~~~~~~~g~g~~l~~ 337 (398)
+...+++ +|+|+|.||+..++..++|.+++|-.. .|...|..+++ .+.=+...+
T Consensus 62 li~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp 123 (161)
T COG5017 62 LIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP 123 (161)
T ss_pred HhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC
Confidence 3334444 999999999999999999999999632 48888999988 687777653
No 115
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.03 E-value=0.04 Score=51.83 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=50.4
Q ss_pred cccCCCCcceEEec--CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhc
Q 042709 280 NDLGHPSIAWFLSH--CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLK 357 (398)
Q Consensus 280 ~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~ 357 (398)
.++..+++-++.++ |...++.||+++|+|+|+..... .....+.+. ..|..++. -+.+++.++|..+++
T Consensus 274 ~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~d~~~la~~i~~ll~ 344 (372)
T cd04949 274 EVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----GDIEALAEAIIELLN 344 (372)
T ss_pred HHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----CcHHHHHHHHHHHHc
Confidence 36777887334443 33458999999999999864321 233445552 67777743 479999999999999
Q ss_pred CHH
Q 042709 358 NDG 360 (398)
Q Consensus 358 ~~~ 360 (398)
|++
T Consensus 345 ~~~ 347 (372)
T cd04949 345 DPK 347 (372)
T ss_pred CHH
Confidence 974
No 116
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=95.99 E-value=0.23 Score=46.44 Aligned_cols=101 Identities=21% Similarity=0.210 Sum_probs=67.6
Q ss_pred ccccCCCCcceEEecCCcchHHHHHhcCCceecc-cCccchhhHHHhhccceeeEEEecC---C-----C--CCCcCHHH
Q 042709 279 ENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCW-PSFADQHHNRNYICDVWKIGVQLLP---D-----E--NGIITRQE 347 (398)
Q Consensus 279 ~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~~~~~~g~g~~l~~---~-----~--~~~~~~~~ 347 (398)
.++|..+++ .+.-.| ..+.|+..+|+|||++ -...=....|+++.+ ... +.+.. + | .+..|++.
T Consensus 255 ~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~-isL~Niia~~~v~PEliQ~~~~~~~ 329 (373)
T PF02684_consen 255 YDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKY-ISLPNIIAGREVVPELIQEDATPEN 329 (373)
T ss_pred HHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCE-eechhhhcCCCcchhhhcccCCHHH
Confidence 345666666 555555 4578999999999765 234445566777754 232 22211 0 1 24689999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHH
Q 042709 348 IQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFR 384 (398)
Q Consensus 348 l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 384 (398)
|.+++..+++|+..++..+...+.+++..+.|.++..
T Consensus 330 i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 330 IAAELLELLENPEKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccCCHH
Confidence 9999999999997777777788888877666666643
No 117
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.91 E-value=0.14 Score=37.29 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=52.5
Q ss_pred cCCcchHHHHHhcCCceecccCccchhhHHHhhcccee-eEEEecCCCCCCcCHHHHHHHHHHHhcCHHHHHHHHH-HHH
Q 042709 293 HCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWK-IGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLK-LKE 370 (398)
Q Consensus 293 HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g-~g~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~-l~~ 370 (398)
+|-..-+.|++.+|+|+|.-+. ......+.. | -++.. . +.+++.++|..+++|+..+++..+ ..+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-----~--~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-----N--DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-----C--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 5556689999999999999543 444444433 4 44444 2 899999999999999864443333 333
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 042709 371 IARKILVEGGSSFRKFDSFI 390 (398)
Q Consensus 371 ~~~~~~~~~g~~~~~~~~~~ 390 (398)
.+.+ .-+....++.|+
T Consensus 76 ~v~~----~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVLK----RHTWEHRAEQIL 91 (92)
T ss_pred HHHH----hCCHHHHHHHHH
Confidence 3332 455555555554
No 118
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=95.88 E-value=0.0051 Score=57.25 Aligned_cols=79 Identities=10% Similarity=0.077 Sum_probs=51.4
Q ss_pred cccCcccccCCCCcceEEecCCcchHH-HHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHH
Q 042709 274 EWAPQENDLGHPSIAWFLSHCGWNSTM-EGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINV 352 (398)
Q Consensus 274 ~~vpq~~lL~~~~~~~~ItHgG~~s~~-eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai 352 (398)
++.....+|+++++ +||..| ++. ||.++|+|.|.+=..++.+. -+.. |..+-++ .++++|.+++
T Consensus 248 ~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe---~r~~--~~nvlv~------~~~~~I~~ai 312 (346)
T PF02350_consen 248 GYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQE---GRER--GSNVLVG------TDPEAIIQAI 312 (346)
T ss_dssp -HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-HH---HHHT--TSEEEET------SSHHHHHHHH
T ss_pred CHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCHH---HHhh--cceEEeC------CCHHHHHHHH
Confidence 34456778889998 999999 666 99999999999822222222 2222 4555453 4899999999
Q ss_pred HHHhcCHHHHHHHHH
Q 042709 353 KALLKNDGIKGNSLK 367 (398)
Q Consensus 353 ~~~l~~~~~~~~a~~ 367 (398)
.+++++..+.++.+.
T Consensus 313 ~~~l~~~~~~~~~~~ 327 (346)
T PF02350_consen 313 EKALSDKDFYRKLKN 327 (346)
T ss_dssp HHHHH-HHHHHHHHC
T ss_pred HHHHhChHHHHhhcc
Confidence 999987554444443
No 119
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=95.51 E-value=0.022 Score=53.20 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=60.2
Q ss_pred cceecccCcc---cccCCCCcceEEe--cCCcc-hHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCc
Q 042709 270 GKIVEWAPQE---NDLGHPSIAWFLS--HCGWN-STMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGII 343 (398)
Q Consensus 270 ~~v~~~vpq~---~lL~~~~~~~~It--HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~ 343 (398)
+.+.+++|+. .+++.+++ +|. .-|.| ++.||+.+|+|+|+.... .....+.+. +.|+.++. -
T Consensus 244 V~~~g~~~~~~~~~~~~~ad~--~v~ps~e~~g~~~~Eama~G~Pvi~~~~~----~~~e~i~~~-~~G~~~~~-----~ 311 (351)
T cd03804 244 VTFLGRVSDEELRDLYARARA--FLFPAEEDFGIVPVEAMASGTPVIAYGKG----GALETVIDG-VTGILFEE-----Q 311 (351)
T ss_pred EEEecCCCHHHHHHHHHhCCE--EEECCcCCCCchHHHHHHcCCCEEEeCCC----CCcceeeCC-CCEEEeCC-----C
Confidence 5667899974 46778888 553 34443 578999999999997543 344445553 67888854 3
Q ss_pred CHHHHHHHHHHHhcCH-HHHHHHHH
Q 042709 344 TRQEIQINVKALLKND-GIKGNSLK 367 (398)
Q Consensus 344 ~~~~l~~ai~~~l~~~-~~~~~a~~ 367 (398)
+.+++.++|.++++|+ ..++++++
T Consensus 312 ~~~~la~~i~~l~~~~~~~~~~~~~ 336 (351)
T cd03804 312 TVESLAAAVERFEKNEDFDPQAIRA 336 (351)
T ss_pred CHHHHHHHHHHHHhCcccCHHHHHH
Confidence 7889999999999987 34444433
No 120
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=95.44 E-value=0.048 Score=53.46 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=54.4
Q ss_pred cceecccCcccccCCCCcceEEe---cCC-cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCC--CCCc
Q 042709 270 GKIVEWAPQENDLGHPSIAWFLS---HCG-WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDE--NGII 343 (398)
Q Consensus 270 ~~v~~~vpq~~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~--~~~~ 343 (398)
+...++.+...+++.+++ +|. .-| ..+++||+++|+|+|+.-.. ..+...+++. .-|..++.+. +..-
T Consensus 378 V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~g-~nG~lv~~~~~~~d~~ 451 (500)
T TIGR02918 378 IHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIEDN-KNGYLIPIDEEEDDED 451 (500)
T ss_pred EEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccCC-CCEEEEeCCccccchh
Confidence 445567777788888888 765 334 35899999999999995432 1234445442 4566665310 0111
Q ss_pred C-HHHHHHHHHHHhcCH
Q 042709 344 T-RQEIQINVKALLKND 359 (398)
Q Consensus 344 ~-~~~l~~ai~~~l~~~ 359 (398)
+ .+++.++|.++++++
T Consensus 452 ~~~~~la~~I~~ll~~~ 468 (500)
T TIGR02918 452 QIITALAEKIVEYFNSN 468 (500)
T ss_pred HHHHHHHHHHHHHhChH
Confidence 2 788999999999654
No 121
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.37 E-value=0.28 Score=47.97 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=55.3
Q ss_pred cccCcccccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccc----e-eeEEEecCCCCCCcC
Q 042709 274 EWAPQENDLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDV----W-KIGVQLLPDENGIIT 344 (398)
Q Consensus 274 ~~vpq~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~----~-g~g~~l~~~~~~~~~ 344 (398)
+...-..+++.+++ +|.- |-.+++.||+.+|+|+|+- |.......+.+. + ..|..++. -+
T Consensus 360 G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~-----~d 428 (475)
T cd03813 360 GFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP-----AD 428 (475)
T ss_pred CCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC-----CC
Confidence 43444556766776 6543 3456899999999999994 444444444441 1 26777743 47
Q ss_pred HHHHHHHHHHHhcCHHHHHHHH
Q 042709 345 RQEIQINVKALLKNDGIKGNSL 366 (398)
Q Consensus 345 ~~~l~~ai~~~l~~~~~~~~a~ 366 (398)
.+++.++|.++++|++.+++..
T Consensus 429 ~~~la~ai~~ll~~~~~~~~~~ 450 (475)
T cd03813 429 PEALARAILRLLKDPELRRAMG 450 (475)
T ss_pred HHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999999999986554443
No 122
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=94.69 E-value=0.37 Score=42.40 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcC-C-CCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIP-D-GLDLQADERED 87 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 87 (398)
++||||+.-=-+. |---+.+|+++|.+.| +|+++.|.....-..... .....+++..+. + +.. ...-...
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai-----t~~~pl~~~~~~~~~~~~-~y~v~GT 75 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM-----TLGVPLRIKEYQKNNRFF-GYTVSGT 75 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc-----cCCCCeEEEEEccCCCce-EEEEcCc
Confidence 4688887765442 2245788999999988 799999877554332221 223356666553 1 110 1101223
Q ss_pred HHHHHhhchhhccCC-ccEEEecC----------cch---hHHHHHHHhCCceEEEcC
Q 042709 88 PHKLMTEDPQADTEC-TACVIADI----------SVG---WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~-pD~vi~D~----------~~~---~~~~~A~~lgiP~v~~~~ 131 (398)
+...+..-...+-.. ||+||+-. +++ +|+.-|..+|||.+.++.
T Consensus 76 PaDCV~lal~~~~~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 76 PVDCIKVALSHILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 332222111111234 88887643 222 466777788999999885
No 123
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.53 E-value=0.12 Score=40.92 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=43.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
|++.+|++.+.++.+|-.-..-++..|..+|++|++++..-..+.+.+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 7899999999999999999999999999999999999986655544433
No 124
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=94.45 E-value=2.1 Score=39.75 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=62.3
Q ss_pred ccCCCCcceEEecCCcchHHHHHhcCCceeccc-CccchhhHHHhhcccee-eE-------EEecCC-CCCCcCHHHHHH
Q 042709 281 DLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWP-SFADQHHNRNYICDVWK-IG-------VQLLPD-ENGIITRQEIQI 350 (398)
Q Consensus 281 lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P-~~~DQ~~na~~~~~~~g-~g-------~~l~~~-~~~~~~~~~l~~ 350 (398)
.+..+++ .+.-+|. -+.|+..+|+|||+.= ...=-...+++... .. ++ -.+-++ -....+++.|.+
T Consensus 261 a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~ 336 (381)
T COG0763 261 AFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLAR 336 (381)
T ss_pred HHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHH
Confidence 3444555 5666654 3579999999998741 11223334555443 12 11 111110 024578999999
Q ss_pred HHHHHhcCH----HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 042709 351 NVKALLKND----GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393 (398)
Q Consensus 351 ai~~~l~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 393 (398)
++..++.|+ .+++...+|.+.++. ++++....+.+++.+
T Consensus 337 ~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~vl~~~ 379 (381)
T COG0763 337 ALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHh
Confidence 999999998 355555555555553 557777777666654
No 125
>PHA01630 putative group 1 glycosyl transferase
Probab=94.10 E-value=0.26 Score=45.64 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=28.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHH
Q 042709 14 VLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAK 53 (398)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 53 (398)
+++.-+|-.+...--.-+-+.|...|++|+++-.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 41 (331)
T PHA01630 2 ALVRDYPDHSFVRQKKLLEEHLKMLGHKVTVFEKPTLTKY 41 (331)
T ss_pred eEEEEccccchHHHHHHHHHHHHHhCCeeEEEeccchhhh
Confidence 4555566655555556667889999999999988765443
No 126
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.41 E-value=0.37 Score=39.73 Aligned_cols=109 Identities=12% Similarity=0.067 Sum_probs=60.5
Q ss_pred CCCccCHHHHHHHHHHH-HhC-CCeEEEEeCccchHH--HHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhh
Q 042709 19 FPALGHVAPLMKLATKI-AEH-GIDVTFVNTEFIHAK--IIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTE 94 (398)
Q Consensus 19 ~~~~GH~~p~l~La~~L-~~r-Gh~Vt~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (398)
.++.||+.-|+.|.+.+ .++ .++..+++..+.... +.+.... ......+..++......+....++...+..
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~----~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~ 80 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKS----SSKRHKILEIPRAREVGQSYLTSIFTTLRA 80 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHh----ccccceeeccceEEEechhhHhhHHHHHHH
Confidence 34669999999999999 333 466666666554333 2211100 000113444442221111112223333333
Q ss_pred chhhc---cC-CccEEEecCcch--hHHHHHHHh------CCceEEEcC
Q 042709 95 DPQAD---TE-CTACVIADISVG--WALEVAEAI------GIARAAFVP 131 (398)
Q Consensus 95 ~~~~~---~~-~pD~vi~D~~~~--~~~~~A~~l------giP~v~~~~ 131 (398)
+...+ .. +||+||+..... ....+|+.+ |.++|.+-+
T Consensus 81 ~~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 81 FLQSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 33333 33 499999998876 677888888 999987554
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=93.39 E-value=0.075 Score=41.79 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=38.7
Q ss_pred ccCCCCcceEEec---CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhc
Q 042709 281 DLGHPSIAWFLSH---CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLK 357 (398)
Q Consensus 281 lL~~~~~~~~ItH---gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~ 357 (398)
+++.+++.+..+. |--+++.|++.+|+|+|+.+. ......+. .+.|..+.. +++++.++|.++++
T Consensus 67 ~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~-~~~~~~~~~------~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 67 ILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEE-DGCGVLVAN------DPEELAEAIERLLN 134 (135)
T ss_dssp HHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-TT-------HHHHHHHHHHHHH
T ss_pred HHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheee-cCCeEEECC------CHHHHHHHHHHHhc
Confidence 3555666444432 234899999999999999654 12333344 377776632 89999999999987
Q ss_pred C
Q 042709 358 N 358 (398)
Q Consensus 358 ~ 358 (398)
|
T Consensus 135 d 135 (135)
T PF13692_consen 135 D 135 (135)
T ss_dssp -
T ss_pred C
Confidence 6
No 128
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=93.34 E-value=1.2 Score=39.49 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=61.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCC-CCCCCCCCCCCHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPD-GLDLQADEREDPHK 90 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (398)
||||+.-=-+. |-.-+.+|+++|.+.| +|+++.|.....-..... +....++...+.. +. ....-...+..
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~ai-----T~~~pl~~~~~~~~~~-~~y~v~GTPaD 72 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGI-----TLHKPLRMYEVDLCGF-KVYATSGTPSD 72 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccc-----cCCCCcEEEEeccCCc-ceEEeCCCHHH
Confidence 46666555443 4455889999999988 799999877654433222 2223455555531 11 01111233332
Q ss_pred HHhhchhhccCC-ccEEEe----------c-Ccch---hHHHHHHHhCCceEEEcC
Q 042709 91 LMTEDPQADTEC-TACVIA----------D-ISVG---WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 91 ~~~~~~~~~~~~-pD~vi~----------D-~~~~---~~~~~A~~lgiP~v~~~~ 131 (398)
....-...+ .. ||+||+ | .+++ +|..-|..+|||.+.+|.
T Consensus 73 CV~lal~~l-~~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 73 TIYLATYGL-GRKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred HHHHHHHhc-cCCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 222211222 44 888886 4 2222 456667788999999885
No 129
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.03 E-value=0.52 Score=46.07 Aligned_cols=78 Identities=24% Similarity=0.294 Sum_probs=47.7
Q ss_pred cceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHH-HHHHHHHHhcCHHHHHHH
Q 042709 287 IAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQE-IQINVKALLKNDGIKGNS 365 (398)
Q Consensus 287 ~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~-l~~ai~~~l~~~~~~~~a 365 (398)
++.+.+. |+.|.++.|+.|||||.+|.-.--...|.-..-.+|+|-.+-+ ++++ ...+| ++-.|. +..
T Consensus 840 LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak------~~eEY~~iaV-~Latd~---~~L 908 (966)
T KOG4626|consen 840 LDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK------NREEYVQIAV-RLATDK---EYL 908 (966)
T ss_pred ccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh------hHHHHHHHHH-HhhcCH---HHH
Confidence 3335554 5789999999999999999855444444444333788875543 4444 44455 444453 344
Q ss_pred HHHHHHHHHH
Q 042709 366 LKLKEIARKI 375 (398)
Q Consensus 366 ~~l~~~~~~~ 375 (398)
+++..+++++
T Consensus 909 ~~lr~~l~~~ 918 (966)
T KOG4626|consen 909 KKLRAKLRKA 918 (966)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 130
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=92.72 E-value=1.1 Score=39.25 Aligned_cols=113 Identities=18% Similarity=0.120 Sum_probs=64.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKL 91 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (398)
||||+.-=-+ =|.--+.+|+++|+ .+++|+++.|.....-+.... +....++...+..+. ......+...
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl-----Tl~~Plr~~~~~~~~---~av~GTPaDC 70 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSL-----TLHEPLRVRQVDNGA---YAVNGTPADC 70 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc-----ccccCceeeEeccce---EEecCChHHH
Confidence 4555544433 24445778899999 999999999988765443332 222344444443310 0011223222
Q ss_pred -HhhchhhccCC-ccEEEecC----------cch---hHHHHHHHhCCceEEEcCCcH
Q 042709 92 -MTEDPQADTEC-TACVIADI----------SVG---WALEVAEAIGIARAAFVPFGP 134 (398)
Q Consensus 92 -~~~~~~~~~~~-pD~vi~D~----------~~~---~~~~~A~~lgiP~v~~~~~~~ 134 (398)
.-.+...+++. ||+||+-. .++ +|+.=|..+|||.+.++....
T Consensus 71 V~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~ 128 (252)
T COG0496 71 VILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAYR 128 (252)
T ss_pred HHHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehhc
Confidence 22333444566 88888643 222 466667789999999886543
No 131
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=92.19 E-value=2.2 Score=37.60 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=60.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcC-CCCC-CCCCCCCCHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIP-DGLD-LQADEREDPH 89 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 89 (398)
||||+.==-+. |---+.+|+++|.+ +|+|+++.|.....-..... +....+....+. ++.. ....-...+.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~si-----t~~~pl~~~~~~~~~~~~~~~~v~GTPa 73 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSI-----TIYEPIIIKEVKLEGINSKAYSISGTPA 73 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccc-----cCCCCeEEEeeccCCCCccEEEECCcHH
Confidence 46666654333 22338889999975 68999999977654332221 222345555543 1100 0010122232
Q ss_pred HHHh-hchhhccCC-ccEEEec----------Ccch---hHHHHHHHhCCceEEEcC
Q 042709 90 KLMT-EDPQADTEC-TACVIAD----------ISVG---WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 90 ~~~~-~~~~~~~~~-pD~vi~D----------~~~~---~~~~~A~~lgiP~v~~~~ 131 (398)
.... .+...+ .. ||+||+- .+++ +|+.-|...|||.+.++.
T Consensus 74 DcV~lal~~l~-~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 74 DCVRVALDKLV-PDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred HHHHHHHHHhc-CCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 2221 222222 34 8888864 3332 466777788999999885
No 132
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.75 E-value=0.53 Score=38.41 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=50.5
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCC-CCCCCCCCCCHHHHHhhchhhc
Q 042709 21 ALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDG-LDLQADEREDPHKLMTEDPQAD 99 (398)
Q Consensus 21 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 99 (398)
..|=-.-+..|+++|+++||+|+++++........ . ........ ..... ...........+.+.+
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~------------~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 76 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE------------E-LVKIFVKIPYPIRK-RFLRSFFFMRRLRRLI 76 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS------------T-EEEE---TT-SSTS-S--HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh------------h-ccceeeeeeccccc-ccchhHHHHHHHHHHH
Confidence 55777789999999999999999998865443321 1 11111111 11110 1111122333444444
Q ss_pred cCC-ccEEEecCcch-hHHHHHHHhCCceEEEcCCcH
Q 042709 100 TEC-TACVIADISVG-WALEVAEAIGIARAAFVPFGP 134 (398)
Q Consensus 100 ~~~-pD~vi~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 134 (398)
+.. ||+|-+..... +....+.. ++|.+.......
T Consensus 77 ~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 77 KKEKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHcCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 555 99995555433 34444444 999988665443
No 133
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=91.73 E-value=2.2 Score=37.57 Aligned_cols=111 Identities=11% Similarity=0.064 Sum_probs=60.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcC--CCCCCCCCCCCCHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIP--DGLDLQADEREDPH 89 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (398)
||||+.-=-+. |---..+|+++|.+ +|+|+++.|.....-..... +....+....+. ++.. ...-...+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ai-----t~~~pl~~~~~~~~~~~~-~y~v~GTPa 72 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAI-----TIRVPLWAKKVFISERFV-AYATTGTPA 72 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccc-----cCCCCceEEEeecCCCcc-EEEECCcHH
Confidence 46666655443 33447888999975 68999999977654432221 112234444443 1110 010122332
Q ss_pred HHHh-hchhhccCC-ccEEEec----------Ccch---hHHHHHHHhCCceEEEcC
Q 042709 90 KLMT-EDPQADTEC-TACVIAD----------ISVG---WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 90 ~~~~-~~~~~~~~~-pD~vi~D----------~~~~---~~~~~A~~lgiP~v~~~~ 131 (398)
.... .+...+ .. ||+||+- .+++ +|..-|...|||.+.++.
T Consensus 73 DcV~lal~~~~-~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 73 DCVKLGYDVIM-DKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred HHHHHHHHhhc-cCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 2222 222222 34 8888864 3332 466667788999999886
No 134
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=91.57 E-value=2.2 Score=37.51 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=61.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCC--CCCCCCCCCCCHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPD--GLDLQADEREDPH 89 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 89 (398)
||||+.==-+ =|---+.+|+++|.+.| +|+++.+.....-..... .....+++..++. +. ........+.
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai-----t~~~pl~~~~~~~~~~~-~~~~v~GTPa 72 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSL-----TLFEPLRVGQVKVKNGA-HIYAVDGTPT 72 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCc-----CCCCCeEEEEeccCCCc-cEEEEcCcHH
Confidence 4566544433 12334788999999998 899999987665443322 2233566666541 11 0110122232
Q ss_pred HHHh-hchhhccCC-ccEEEecCc----------ch---hHHHHHHHhCCceEEEcC
Q 042709 90 KLMT-EDPQADTEC-TACVIADIS----------VG---WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 90 ~~~~-~~~~~~~~~-pD~vi~D~~----------~~---~~~~~A~~lgiP~v~~~~ 131 (398)
.... .+... -.. ||+||+-.. ++ +|..-|...|||.+.++.
T Consensus 73 Dcv~~gl~~l-~~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 73 DCVILGINEL-MPEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHHHHHHHHh-ccCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 2222 22222 234 888886432 22 466777788999999885
No 135
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=91.41 E-value=1.4 Score=43.44 Aligned_cols=61 Identities=18% Similarity=0.094 Sum_probs=40.6
Q ss_pred cceecccC-cccccCCCCcceEEec---CC-cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecC
Q 042709 270 GKIVEWAP-QENDLGHPSIAWFLSH---CG-WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLP 337 (398)
Q Consensus 270 ~~v~~~vp-q~~lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~ 337 (398)
+.+.+|.. -..+|+.+++ ||.. -| .+++.||+.+|+|+|+- |-..+...+.+. ..|..++.
T Consensus 457 V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVAT----dvGG~~EiV~dG-~nG~LVp~ 522 (578)
T PRK15490 457 ILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVIST----PAGGSAECFIEG-VSGFILDD 522 (578)
T ss_pred EEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEe----CCCCcHHHcccC-CcEEEECC
Confidence 33445532 2335777777 8753 44 55999999999999985 444566666663 67888865
No 136
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.08 E-value=1.5 Score=42.62 Aligned_cols=100 Identities=12% Similarity=0.055 Sum_probs=65.7
Q ss_pred ccCccc---ccCCCCcceEEe---cCCcc-hHHHHHhcCCc----eecccCccchhhHHHhhccceeeEEEecCCCCCCc
Q 042709 275 WAPQEN---DLGHPSIAWFLS---HCGWN-STMEGLSMGVP----FLCWPSFADQHHNRNYICDVWKIGVQLLPDENGII 343 (398)
Q Consensus 275 ~vpq~~---lL~~~~~~~~It---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~ 343 (398)
.+++.+ +++.+++ |+. +-|+| +..||+++|+| +|+--+.+ .+..+ +-|+.+++ .
T Consensus 343 ~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP-----~ 407 (456)
T TIGR02400 343 SYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNP-----Y 407 (456)
T ss_pred CCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECC-----C
Confidence 345554 3566676 775 44655 77899999999 66543332 22222 34666643 5
Q ss_pred CHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 344 TRQEIQINVKALLKND--GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 344 ~~~~l~~ai~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
+.+++.++|.++++++ +.+++.+++.+.+. .-+...-.+.|++.|.
T Consensus 408 d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 408 DIDGMADAIARALTMPLEEREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 8999999999999854 45556666666644 3566777888887764
No 137
>PHA01633 putative glycosyl transferase group 1
Probab=91.01 E-value=0.74 Score=42.54 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=39.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCC
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPD 76 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
|-+++++--.+--+..-.++..|++.|.-|+.++++-+....++. +.|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 54 (335)
T PHA01633 2 KTAILTMNYSSISNVSEDIAEVLRENGEIVTITKNPFYIPKAEKL-----------IVFIPFHP 54 (335)
T ss_pred ceEEEEechhhhhhHHHHHHHHHHhCCcEEEEecCCcccCccceE-----------EEEeecCC
Confidence 445555555556677788999999999999999999887766543 77777743
No 138
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=90.98 E-value=2.9 Score=36.78 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=61.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKL 91 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (398)
||||+.-=-+. |.--+.+|+++|.+. |+|+++.|.....-..... .....+++..+.++. ......+...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai-----t~~~pl~~~~~~~~~---~~v~GTPaDc 70 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSL-----TLTRPLRVEKVDNGF---YAVDGTPTDC 70 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc-----cCCCCeEEEEecCCe---EEECCcHHHH
Confidence 46666554432 334478899999998 7999999977654432222 222356666653211 1012223222
Q ss_pred HhhchhhccCC-ccEEEecC----------cch---hHHHHHHHhCCceEEEcC
Q 042709 92 MTEDPQADTEC-TACVIADI----------SVG---WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 92 ~~~~~~~~~~~-pD~vi~D~----------~~~---~~~~~A~~lgiP~v~~~~ 131 (398)
...-...+-.. ||+||+-. +++ +|..-|...|||.+.++.
T Consensus 71 V~~gl~~l~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 71 VHLALNGLLDPKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred HHHHHHhhccCCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 22111112223 78877643 222 466777788999999885
No 139
>PRK14098 glycogen synthase; Provisional
Probab=90.54 E-value=2.4 Score=41.69 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=57.6
Q ss_pred EEEEEeCCcccCCHHHHHHhhc-----cceecccCcc---cccCCCCcceEEecC---Cc-chHHHHHhcCCceecccCc
Q 042709 248 VTYVAFGRFSILGQEQLEQLAL-----GKIVEWAPQE---NDLGHPSIAWFLSHC---GW-NSTMEGLSMGVPFLCWPSF 315 (398)
Q Consensus 248 vVyvs~Gs~~~~~~~~~~~~~~-----~~v~~~vpq~---~lL~~~~~~~~ItHg---G~-~s~~eal~~GvP~v~~P~~ 315 (398)
+-++-+|+......+.+++++. +.+...++.. .+++.+++ |+.-. |. .+.+||+++|+|.|+....
T Consensus 337 ~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~G 414 (489)
T PRK14098 337 IQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGG 414 (489)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCC
Confidence 4455556532111234454443 3344556653 46777777 77543 22 3678999999988876543
Q ss_pred cchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHh
Q 042709 316 ADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALL 356 (398)
Q Consensus 316 ~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l 356 (398)
+-........++. +.|...+. .+++++.++|.+++
T Consensus 415 Gl~d~v~~~~~~~-~~G~l~~~-----~d~~~la~ai~~~l 449 (489)
T PRK14098 415 GIVETIEEVSEDK-GSGFIFHD-----YTPEALVAKLGEAL 449 (489)
T ss_pred CCceeeecCCCCC-CceeEeCC-----CCHHHHHHHHHHHH
Confidence 2111111111122 67777743 47899999999876
No 140
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.02 E-value=4.6 Score=36.37 Aligned_cols=106 Identities=18% Similarity=0.098 Sum_probs=68.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc-hHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH-H
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI-HAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH-K 90 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 90 (398)
||+|=-. ..-|+.-+..+...|.++||+|.+.+-+.. ...+-+.. |+.+..+.... ...+. .
T Consensus 2 kVwiDI~-n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Igk~g------~~tl~~K 65 (346)
T COG1817 2 KVWIDIG-NPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIGKHG------GVTLKEK 65 (346)
T ss_pred eEEEEcC-CcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeecccC------CccHHHH
Confidence 4544333 346888899999999999999988775432 22222332 78887775221 11122 2
Q ss_pred HHhhchh------hccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHH
Q 042709 91 LMTEDPQ------ADTEC-TACVIADISVGWALEVAEAIGIARAAFVPFGPG 135 (398)
Q Consensus 91 ~~~~~~~------~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 135 (398)
+.....+ ...+. ||+.+. -..+-.+.+|--+|+|.+.+.-..-.
T Consensus 66 l~~~~eR~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 66 LLESAERVYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 3222222 22666 999999 56678999999999999998765543
No 141
>PLN02316 synthase/transferase
Probab=89.52 E-value=2.4 Score=45.00 Aligned_cols=109 Identities=6% Similarity=-0.058 Sum_probs=66.9
Q ss_pred cccCCCCcceEEec----CCcchHHHHHhcCCceecccCcc--chhhHH-------HhhccceeeEEEecCCCCCCcCHH
Q 042709 280 NDLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFA--DQHHNR-------NYICDVWKIGVQLLPDENGIITRQ 346 (398)
Q Consensus 280 ~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~--DQ~~na-------~~~~~~~g~g~~l~~~~~~~~~~~ 346 (398)
.+++.+++ |+.- +=..+.+||+++|+|.|+-...+ |.-... ...-. -+-|...+ ..+++
T Consensus 915 ~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~-~~tGflf~-----~~d~~ 986 (1036)
T PLN02316 915 LIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGL-EPNGFSFD-----GADAA 986 (1036)
T ss_pred HHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccccc-CCceEEeC-----CCCHH
Confidence 46777777 8753 22348999999999888754422 221111 00000 14677774 35899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhC
Q 042709 347 EIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVLRC 398 (398)
Q Consensus 347 ~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 398 (398)
.|.++|.+++.+ |.+..+.+++..+.++...=|-.+.+++..+.++..||
T Consensus 987 aLa~AL~raL~~--~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~~ 1036 (1036)
T PLN02316 987 GVDYALNRAISA--WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSARK 1036 (1036)
T ss_pred HHHHHHHHHHhh--hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhC
Confidence 999999999974 34444455666665554444546667777777766664
No 142
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=89.33 E-value=0.89 Score=34.93 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=35.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAK 53 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 53 (398)
||++.+.++..|.....-++..|.++|++|++.......+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~ 41 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEE 41 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 58999999999999999999999999999999876544433
No 143
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=89.08 E-value=1.1 Score=43.87 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=44.0
Q ss_pred ccCCCCcceEEec---CCc-chHHHHHhcCCceecccCccchhhHHHhhccc-----eeeEEEecCCCCCCcCHHHHHHH
Q 042709 281 DLGHPSIAWFLSH---CGW-NSTMEGLSMGVPFLCWPSFADQHHNRNYICDV-----WKIGVQLLPDENGIITRQEIQIN 351 (398)
Q Consensus 281 lL~~~~~~~~ItH---gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~-----~g~g~~l~~~~~~~~~~~~l~~a 351 (398)
+++.+++ ++.- -|. .+.+||+.+|+|.|+-... .....+.+. -|.|..++. -+++++.++
T Consensus 367 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~g----g~~e~v~~~~~~~~~~~G~~~~~-----~~~~~l~~~ 435 (476)
T cd03791 367 IYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATG----GLADTVIDYNEDTGEGTGFVFEG-----YNADALLAA 435 (476)
T ss_pred HHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCC----CccceEeCCcCCCCCCCeEEeCC-----CCHHHHHHH
Confidence 5666776 7643 223 3779999999999986542 222223220 247888854 478999999
Q ss_pred HHHHhc
Q 042709 352 VKALLK 357 (398)
Q Consensus 352 i~~~l~ 357 (398)
|.++++
T Consensus 436 i~~~l~ 441 (476)
T cd03791 436 LRRALA 441 (476)
T ss_pred HHHHHH
Confidence 999886
No 144
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=88.52 E-value=20 Score=32.89 Aligned_cols=58 Identities=10% Similarity=0.024 Sum_probs=42.6
Q ss_pred CcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhh----HHHhhccceeeEEEecC
Q 042709 277 PQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHH----NRNYICDVWKIGVQLLP 337 (398)
Q Consensus 277 pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~----na~~~~~~~g~g~~l~~ 337 (398)
|....|..++. ++||---.+.+.||+..|+|+.++|.-. +.. -.+.+++ .|+-..+..
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECCC
Confidence 67778888876 6788888999999999999999999865 322 2234455 376666643
No 145
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=88.30 E-value=3.1 Score=39.97 Aligned_cols=100 Identities=12% Similarity=0.122 Sum_probs=64.0
Q ss_pred cccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEE-ecCCCCCCcCHHHHHHHHHHHhcC
Q 042709 280 NDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQ-LLPDENGIITRQEIQINVKALLKN 358 (398)
Q Consensus 280 ~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~-l~~~~~~~~~~~~l~~ai~~~l~~ 358 (398)
.+++++++ +|..==+ +..-|+..|||.+.++. | +-....+.. +|..-. .+. ..++.++|.+.+.++++|
T Consensus 323 ~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~---~~l~~~~Li~~v~~~~~~ 392 (426)
T PRK10017 323 KILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDI---RHLLDGSLQAMVADTLGQ 392 (426)
T ss_pred HHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEech---hhCCHHHHHHHHHHHHhC
Confidence 67778877 7753323 35567899999999997 3 333333345 677654 443 678899999999999998
Q ss_pred H-HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 042709 359 D-GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKV 395 (398)
Q Consensus 359 ~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 395 (398)
. .+++..++.-+.++.. ......++++.+.+
T Consensus 393 r~~~~~~l~~~v~~~r~~------~~~~~~~~~~~~~~ 424 (426)
T PRK10017 393 LPALNARLAEAVSRERQT------GMQMVQSVLERIGE 424 (426)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcc
Confidence 5 4555555444444431 12344556655544
No 146
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=88.27 E-value=0.98 Score=34.68 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=28.2
Q ss_pred CEEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 12 PHVLVIPFPALG---HVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 12 ~~il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
|||+|+.-|-.+ .-.-.++|+.+-.+|||+|.++......
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 688888887544 2345889999999999999999987654
No 147
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=88.22 E-value=2.4 Score=36.03 Aligned_cols=70 Identities=23% Similarity=0.091 Sum_probs=49.6
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhcc
Q 042709 21 ALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADT 100 (398)
Q Consensus 21 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (398)
..|+-.....|++.|.++||+|++++ . +...+...+.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~--~-----------------------------------------~~~~~~~~~~ 48 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA--L-----------------------------------------LLLLLLRILR 48 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE--e-----------------------------------------chHHHHHHHh
Confidence 67999999999999999999999988 0 0011111112
Q ss_pred CC-ccEEEecCcchhHH---HHHHHhCCceEEEcCCc
Q 042709 101 EC-TACVIADISVGWAL---EVAEAIGIARAAFVPFG 133 (398)
Q Consensus 101 ~~-pD~vi~D~~~~~~~---~~A~~lgiP~v~~~~~~ 133 (398)
+. ||+|++........ ..+...++|++......
T Consensus 49 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 85 (229)
T cd01635 49 GFKPDVVHAHGYYPAPLALLLAARLLGIPLVLTVHGV 85 (229)
T ss_pred hcCCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEEcCc
Confidence 44 99999888766333 46778899988755444
No 148
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=87.69 E-value=1 Score=35.29 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=37.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
|||++...++.+=.. ...+.++|.++|++|.++.+++-...+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 588888888755555 999999999999999999999888777665
No 149
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.69 E-value=3.7 Score=40.10 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=38.2
Q ss_pred cCCCCcceEEe---cCCcchHHHHHhcCCceecccCccchhhH--HHhhccceeeEEEecCCCCCCcCHHHHHHHHH
Q 042709 282 LGHPSIAWFLS---HCGWNSTMEGLSMGVPFLCWPSFADQHHN--RNYICDVWKIGVQLLPDENGIITRQEIQINVK 353 (398)
Q Consensus 282 L~~~~~~~~It---HgG~~s~~eal~~GvP~v~~P~~~DQ~~n--a~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~ 353 (398)
+.-+++ |+- =||+.|..|+|..|||+|..+ ++|+.- +.-+....|+--.+-. =..+-+..+|+
T Consensus 506 ~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~-----s~~dYV~~av~ 573 (620)
T COG3914 506 YGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD-----SRADYVEKAVA 573 (620)
T ss_pred hchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC-----CHHHHHHHHHH
Confidence 334444 654 599999999999999999986 677632 2222222344333321 13455666663
No 150
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=87.62 E-value=2.5 Score=34.78 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=46.6
Q ss_pred hCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCC---CCCCCCHHHHH-------hhchhhc-cCC-cc
Q 042709 37 EHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQ---ADEREDPHKLM-------TEDPQAD-TEC-TA 104 (398)
Q Consensus 37 ~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~-~~~-pD 104 (398)
++||+|+|++........ +|++...+...-... .....++...+ +.+.+.- ++. ||
T Consensus 1 q~gh~v~fl~~~~~~~~~------------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PD 68 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP------------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPD 68 (171)
T ss_pred CCCCEEEEEecCCCCCCC------------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 589999999965443221 378887775421111 10112222111 1111111 456 99
Q ss_pred EEEecCcchhHHHHHHHh-CCceEEEc
Q 042709 105 CVIADISVGWALEVAEAI-GIARAAFV 130 (398)
Q Consensus 105 ~vi~D~~~~~~~~~A~~l-giP~v~~~ 130 (398)
+||...-.-.+..+-..+ ++|.+.+.
T Consensus 69 vI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 69 VIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred EEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 999997755667777777 88888754
No 151
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=87.24 E-value=2 Score=39.49 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=69.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHHhhcccccCCCCCeE-EEEcCCCCCCCCCCCCCHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEH--GIDVTFVNTEFIHAKIIASMQGKAENSSSQIM-LVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (398)
|||++-....|++.-...+.+.|+++ +.+|++++.+.+.+.++.. +.+. +..++..--..........
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~---------p~vd~v~~~~~~~~~~~~~~~~~~ 71 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH---------PAVDEVIPVALRRWRKTLFSAATW 71 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC---------CCccEEEEechhhhhhccccchhH
Confidence 68999999999999999999999998 8999999999988777654 3453 5555421000000011111
Q ss_pred HHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEE
Q 042709 90 KLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAF 129 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~ 129 (398)
..+..+...+++. +|++|.-........++...+.+.+.+
T Consensus 72 ~~~~~~~~~lr~~~yD~vi~~~~~~~s~~l~~~~~~~r~g~ 112 (319)
T TIGR02193 72 REIKALRALLRAERYDAVIDAQGLIKSALVARMARGPRHGF 112 (319)
T ss_pred HHHHHHHHHHhhccchhhhhhhhhHHHHHHHHhhCCceecC
Confidence 2233333334555 999885444444566777777555544
No 152
>PRK12342 hypothetical protein; Provisional
Probab=86.95 E-value=7 Score=34.56 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCccch--HH-H-HHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCC-
Q 042709 28 LMKLATKIAEHGIDVTFVNTEFIH--AK-I-IASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTEC- 102 (398)
Q Consensus 28 ~l~La~~L~~rGh~Vt~~~~~~~~--~~-v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 102 (398)
.++.|-.|++.|.+||.++-.... .. + ++..+ -+.+..-..+ ++.+ ...|.......+...++..
T Consensus 40 AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~ala----mGaD~avli~-d~~~-----~g~D~~ata~~La~~i~~~~ 109 (254)
T PRK12342 40 AIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLS----RGPHSLYLVQ-DAQL-----EHALPLDTAKALAAAIEKIG 109 (254)
T ss_pred HHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHH----cCCCEEEEEe-cCcc-----CCCCHHHHHHHHHHHHHHhC
Confidence 577788888889999988865422 22 2 32221 0011111111 1122 2234544455555555555
Q ss_pred ccEEEecCcch------hHHHHHHHhCCceEEEcCC
Q 042709 103 TACVIADISVG------WALEVAEAIGIARAAFVPF 132 (398)
Q Consensus 103 pD~vi~D~~~~------~~~~~A~~lgiP~v~~~~~ 132 (398)
||+|++-.... -+..+|+.+|+|++.+...
T Consensus 110 ~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 110 FDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 99999976654 3899999999999986643
No 153
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=86.85 E-value=5 Score=37.43 Aligned_cols=102 Identities=11% Similarity=-0.006 Sum_probs=69.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHHhhcccccCCCCCeEE-EEcCCCCCCCCCCCCCH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEH--GIDVTFVNTEFIHAKIIASMQGKAENSSSQIML-VSIPDGLDLQADEREDP 88 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 88 (398)
||||++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+.++.. +.+.- ..++.. . .....
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------P~vd~vi~~~~~--~---~~~~~ 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM---------PEVNEAIPMPLG--H---GALEI 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC---------CccCEEEecccc--c---chhhh
Confidence 589999999999999999999999996 8999999999888877654 24432 222211 0 11111
Q ss_pred HHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEE
Q 042709 89 HKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAA 128 (398)
Q Consensus 89 ~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~ 128 (398)
.... .+...++.. +|++|.=....-...++...|+|.-.
T Consensus 67 ~~~~-~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 GERR-RLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred HHHH-HHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 1111 223333555 99988765555667777888888654
No 154
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=86.63 E-value=6.7 Score=34.71 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCC--CeEEEEeCccch----HHHHHhhcccccCCCCCeEEEEcCC-CCCCCCCCCCCHHHHHhhchhhcc
Q 042709 28 LMKLATKIAEHG--IDVTFVNTEFIH----AKIIASMQGKAENSSSQIMLVSIPD-GLDLQADEREDPHKLMTEDPQADT 100 (398)
Q Consensus 28 ~l~La~~L~~rG--h~Vt~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (398)
.++.|-.|++++ .+||.++-..-. ..+++..+ -+.+.. +.+.+ .+ ...|.......+...++
T Consensus 41 AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLA----mGaD~a--vli~d~~~-----~g~D~~~tA~~La~ai~ 109 (256)
T PRK03359 41 AIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLS----RGPDEL--IVVIDDQF-----EQALPQQTASALAAAAQ 109 (256)
T ss_pred HHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHH----cCCCEE--EEEecCcc-----cCcCHHHHHHHHHHHHH
Confidence 578888999873 699998865322 23443321 000111 11221 12 22345455555555555
Q ss_pred CC-ccEEEecCcch------hHHHHHHHhCCceEEEcCC
Q 042709 101 EC-TACVIADISVG------WALEVAEAIGIARAAFVPF 132 (398)
Q Consensus 101 ~~-pD~vi~D~~~~------~~~~~A~~lgiP~v~~~~~ 132 (398)
+. ||+|++-.... -+..+|+.+|+|++++...
T Consensus 110 ~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 110 KAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 56 99999965543 5889999999999987654
No 155
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=86.35 E-value=1.6 Score=36.86 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=36.1
Q ss_pred CCCCEEEEEcCCCccCHHH-HHHHHHHHHhCCCeEEEEeCccchHHH
Q 042709 9 CRQPHVLVIPFPALGHVAP-LMKLATKIAEHGIDVTFVNTEFIHAKI 54 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~~v 54 (398)
++++||++.-.++ +..+- ...|++.|.++||+|.++.++.-...+
T Consensus 3 l~~k~IllgVTGs-iaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 3 LKGKRIGFGLTGS-HCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCCEEEEEEcCH-HHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 3578898888876 44555 799999999999999999998766544
No 156
>PRK14099 glycogen synthase; Provisional
Probab=86.11 E-value=1.2 Score=43.71 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 9 CRQPHVLVIPFP------ALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 9 m~~~~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|++|||+|++.- +.|=-...-+|.++|+++||+|.++.|..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 788999998753 44556667889999999999999999954
No 157
>PRK06849 hypothetical protein; Provisional
Probab=85.72 E-value=5.1 Score=38.01 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
++++||++...+ ...+.+++.|.++||+|+++......-...+.. --.+..+|. ...+..
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~---------~d~~~~~p~-------p~~d~~ 62 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLKYPLSRFSRA---------VDGFYTIPS-------PRWDPD 62 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHh---------hhheEEeCC-------CCCCHH
Confidence 468888885433 368999999999999999998765332111111 122333321 122344
Q ss_pred HHHhhchhhccCC-ccEEEecC
Q 042709 90 KLMTEDPQADTEC-TACVIADI 110 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~ 110 (398)
.+.+.+.+..+.. +|+||.-.
T Consensus 63 ~~~~~L~~i~~~~~id~vIP~~ 84 (389)
T PRK06849 63 AYIQALLSIVQRENIDLLIPTC 84 (389)
T ss_pred HHHHHHHHHHHHcCCCEEEECC
Confidence 5666666666566 89888543
No 158
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=84.98 E-value=5.2 Score=36.79 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=41.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHHh
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEH--GIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~ 57 (398)
||||++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+.++..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH 48 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC
Confidence 589999999999999999999999997 8999999998887766443
No 159
>PRK05973 replicative DNA helicase; Provisional
Probab=84.95 E-value=7 Score=34.17 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=39.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
+.-+++..-|+.|=..-.+.++...+++|+.|.|++.+...+.+.+.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 34567788889999999999999999999999999998877665544
No 160
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=84.82 E-value=1.9 Score=42.54 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=43.5
Q ss_pred ccCCCCcceEEecC---CcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhc
Q 042709 281 DLGHPSIAWFLSHC---GWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLK 357 (398)
Q Consensus 281 lL~~~~~~~~ItHg---G~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~ 357 (398)
++.+..+ +|.=+ |.++..||+.+|+|+| .......+.. -.=|.-+. +.++|.++|..+|.
T Consensus 425 ~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li~-------d~~~l~~al~~~L~ 487 (519)
T TIGR03713 425 ALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYIID-------DISELLKALDYYLD 487 (519)
T ss_pred HHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEeC-------CHHHHHHHHHHHHh
Confidence 4444444 76544 7779999999999999 2223344444 23444441 78999999999999
Q ss_pred CHH
Q 042709 358 NDG 360 (398)
Q Consensus 358 ~~~ 360 (398)
+.+
T Consensus 488 ~~~ 490 (519)
T TIGR03713 488 NLK 490 (519)
T ss_pred CHH
Confidence 974
No 161
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=84.07 E-value=11 Score=27.26 Aligned_cols=78 Identities=19% Similarity=0.121 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCC-ccEE
Q 042709 28 LMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTEC-TACV 106 (398)
Q Consensus 28 ~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pD~v 106 (398)
++.+++.|.+.|+++ ++++.....+++. |+.....-... .+...+ ..+.++.. +|+|
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~~~----------Gi~~~~~~~ki------~~~~~~----i~~~i~~g~id~V 59 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLREA----------GLPVKTLHPKV------HGGILA----ILDLIKNGEIDLV 59 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHHC----------CCcceeccCCC------CCCCHH----HHHHhcCCCeEEE
Confidence 468999999999988 3565667777765 45543211111 001111 22333455 9999
Q ss_pred EecCc---------chhHHHHHHHhCCceE
Q 042709 107 IADIS---------VGWALEVAEAIGIARA 127 (398)
Q Consensus 107 i~D~~---------~~~~~~~A~~lgiP~v 127 (398)
|.-.. ...-...|-..+||++
T Consensus 60 In~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 60 INTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred EECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 88543 1245677888899986
No 162
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=83.06 E-value=6.4 Score=41.18 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=63.2
Q ss_pred cccCCCCcceEEec---CCcc-hHHHHHhcCCc---eecccCccchhhHHHhhcccee-eEEEecCCCCCCcCHHHHHHH
Q 042709 280 NDLGHPSIAWFLSH---CGWN-STMEGLSMGVP---FLCWPSFADQHHNRNYICDVWK-IGVQLLPDENGIITRQEIQIN 351 (398)
Q Consensus 280 ~lL~~~~~~~~ItH---gG~~-s~~eal~~GvP---~v~~P~~~DQ~~na~~~~~~~g-~g~~l~~~~~~~~~~~~l~~a 351 (398)
.+++.+++ ||.- -|+| +..|++.+|+| +++++- --..+.. +| -|+.+.+ .+.+++.++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe---~~G~~~~----l~~~allVnP-----~D~~~lA~A 436 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSE---FAGAGQS----LGAGALLVNP-----WNITEVSSA 436 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeC---CcCchhh----hcCCeEEECC-----CCHHHHHHH
Confidence 46667777 7754 4777 66799999999 444432 2222221 33 4777744 589999999
Q ss_pred HHHHhc-CH-HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 042709 352 VKALLK-ND-GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVL 396 (398)
Q Consensus 352 i~~~l~-~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 396 (398)
|.++|+ ++ +.+++.+++.+..+. -+...-.+.|++.+.+.
T Consensus 437 I~~aL~m~~~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 437 IKEALNMSDEERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 999998 44 344555555555443 45566677777777654
No 163
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=82.97 E-value=8.9 Score=34.04 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=59.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC---CCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEH---GIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~r---Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
|||+.==-+ =|---+.+|++.|.+. |++|+++.|.....-..... +....+++..+.++. ..-...+.
T Consensus 2 ~ILlTNDDG-I~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai-----T~~~pl~~~~~~~~~---yav~GTPa 72 (261)
T PRK13931 2 RILITNDDG-INAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI-----SYTHPMMIAELGPRR---FAAEGSPA 72 (261)
T ss_pred eEEEEcCCC-CCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc-----cCCCCeEEEEeCCCe---EEEcCchH
Confidence 455443322 1233466788888774 47999999977654332222 222356666654221 11122332
Q ss_pred HHHh-hchhhccCC-ccEEEec----------Ccch---hHHHHHHHhCCceEEEcC
Q 042709 90 KLMT-EDPQADTEC-TACVIAD----------ISVG---WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 90 ~~~~-~~~~~~~~~-pD~vi~D----------~~~~---~~~~~A~~lgiP~v~~~~ 131 (398)
..+. .+...+... ||+||+- .+++ +|..-|...|||.+.++.
T Consensus 73 DCV~lal~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 73 DCVLAALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHHHHHHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 2222 222222335 8888873 3333 456677788999999885
No 164
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=82.67 E-value=3.5 Score=40.13 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=59.3
Q ss_pred cccCccc---ccCCCCcceEEe---cCCcc-hHHHHHhcCCc----eecccCccchhhHHHhhccceeeEEEecCCCCCC
Q 042709 274 EWAPQEN---DLGHPSIAWFLS---HCGWN-STMEGLSMGVP----FLCWPSFADQHHNRNYICDVWKIGVQLLPDENGI 342 (398)
Q Consensus 274 ~~vpq~~---lL~~~~~~~~It---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 342 (398)
+++++.+ +++.+++ ||. .-|+| ++.||+++|+| +|+--.. ..+.. ..-|+.+++
T Consensus 347 g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~----G~~~~----~~~g~lv~p----- 411 (460)
T cd03788 347 RSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFA----GAAEE----LSGALLVNP----- 411 (460)
T ss_pred CCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccc----cchhh----cCCCEEECC-----
Confidence 5566655 4667777 763 45655 67899999999 4443221 11111 123555643
Q ss_pred cCHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 042709 343 ITRQEIQINVKALLKNDG--IKGNSLKLKEIARKILVEGGSSFRKFDSFISQI 393 (398)
Q Consensus 343 ~~~~~l~~ai~~~l~~~~--~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 393 (398)
.+.+++.++|.++++++. .+.+.++..+... .-+...-++.|+++|
T Consensus 412 ~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 YDIDEVADAIHRALTMPLEERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 478999999999998652 2233333333322 355567777777665
No 165
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=82.58 E-value=6.8 Score=37.76 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
++.|++++..+ .-.+.+++.|.+.|-+|..+..........+. +.+..-..+.........+..
T Consensus 298 ~gk~v~i~~~~-----~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~v~~~d~~ 361 (428)
T cd01965 298 GGKRVAIAGDP-----DLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKR-----------MELLASLEGIPAEVVFVGDLW 361 (428)
T ss_pred cCCEEEEEcCh-----HHHHHHHHHHHHcCCcceEEEEcCCCchhHHH-----------HHHhhhhcCCCceEEECCCHH
Confidence 57888877433 35678999999999888876664322222111 000000001110100233444
Q ss_pred HHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 90 KLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
++.+.+ ++. ||++|.+.. ...+|+++|+|++.+.
T Consensus 362 el~~~i----~~~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 362 DLESLA----KEEPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHh----hccCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 444333 455 999999975 6789999999998754
No 166
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.46 E-value=4.8 Score=38.08 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=59.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHK 90 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
+..|+++-.=+.|-..-.-.||+.|.++|+.|.+++..-+..-.-++.... ...-++.|+... ...++.+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~L--a~q~~v~~f~~~--------~~~~Pv~ 169 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQL--AEQVGVPFFGSG--------TEKDPVE 169 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHH--HHHcCCceecCC--------CCCCHHH
Confidence 456778888899999999999999999999999999988777543332100 111256665542 2223333
Q ss_pred HHhhchhhccCC-ccEEEecCc
Q 042709 91 LMTEDPQADTEC-TACVIADIS 111 (398)
Q Consensus 91 ~~~~~~~~~~~~-pD~vi~D~~ 111 (398)
..+.-.+..+.. .|+||+|..
T Consensus 170 Iak~al~~ak~~~~DvvIvDTA 191 (451)
T COG0541 170 IAKAALEKAKEEGYDVVIVDTA 191 (451)
T ss_pred HHHHHHHHHHHcCCCEEEEeCC
Confidence 333322333445 888888855
No 167
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=82.45 E-value=24 Score=31.88 Aligned_cols=119 Identities=11% Similarity=0.089 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhh--c--cccc-CCCCCeEEEEcCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASM--Q--GKAE-NSSSQIMLVSIPDGLDLQADE 84 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~--~--~~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (398)
+..+|.+.-.|+.|--.-.=+|++.|.++||+|-+++-.....+-.-+. . .... ...+++=+.++|..- .
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG-----~ 124 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRG-----T 124 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCc-----c
Confidence 4567779999999999999999999999999999998655433211110 0 0000 223455555554221 1
Q ss_pred CCCHHHHHhhchhhccCC-ccEEEecCcch--hHHHHHHHhCCceEEEcCCc
Q 042709 85 REDPHKLMTEDPQADTEC-TACVIADISVG--WALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-pD~vi~D~~~~--~~~~~A~~lgiP~v~~~~~~ 133 (398)
...+..........++.- +|+||.+.... .=..+++..++=.+...+..
T Consensus 125 lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~ 176 (323)
T COG1703 125 LGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGA 176 (323)
T ss_pred chhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCC
Confidence 222333333333444556 99999998765 34677777776666655444
No 168
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=82.31 E-value=26 Score=34.31 Aligned_cols=105 Identities=10% Similarity=0.020 Sum_probs=68.3
Q ss_pred ceecccCccc---ccCCCCcceEEe---cCCcchHH-HHHhcCC----ceecccCccchhhHHHhhccceeeEEEecCCC
Q 042709 271 KIVEWAPQEN---DLGHPSIAWFLS---HCGWNSTM-EGLSMGV----PFLCWPSFADQHHNRNYICDVWKIGVQLLPDE 339 (398)
Q Consensus 271 ~v~~~vpq~~---lL~~~~~~~~It---HgG~~s~~-eal~~Gv----P~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~ 339 (398)
++.+.+|+.+ +++-+++ ++. .-|+|-+. |.+.++. |+|+=-+. -|. ++ +.-|+.+.+
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~~-l~~AllVNP-- 432 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--VE-LKGALLTNP-- 432 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--hh-cCCCEEECC--
Confidence 4457777766 4455666 654 45898655 9999877 54442221 111 23 445777744
Q ss_pred CCCcCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 042709 340 NGIITRQEIQINVKALLKND--GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKV 395 (398)
Q Consensus 340 ~~~~~~~~l~~ai~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 395 (398)
.+.+++.++|.+.|+.+ +-+++.+++.+..+. -+...=.+.|++.|..
T Consensus 433 ---~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMPKAEQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred ---CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 69999999999999976 345566666665553 4566668888887765
No 169
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=82.17 E-value=3 Score=36.95 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=43.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
++..++|+-.|+.|=..=..++|.+|.++|+.|+|++.+.+...+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999998888765
No 170
>PRK10867 signal recognition particle protein; Provisional
Probab=82.16 E-value=6.7 Score=37.68 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=58.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEH-GIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHK 90 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
.-|+++..++.|=..-...||..|+++ |+.|.+++.+.+.....++.... ....++.+...+. ..++..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~--a~~~gv~v~~~~~--------~~dp~~ 170 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTL--GEQIGVPVFPSGD--------GQDPVD 170 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHH--HhhcCCeEEecCC--------CCCHHH
Confidence 446677778999999999999999999 99999999987766432221000 1112566554431 123334
Q ss_pred HHhhchhhccCC-ccEEEecCcc
Q 042709 91 LMTEDPQADTEC-TACVIADISV 112 (398)
Q Consensus 91 ~~~~~~~~~~~~-pD~vi~D~~~ 112 (398)
+.....+..... +|+||.|...
T Consensus 171 i~~~a~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 171 IAKAALEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCC
Confidence 443333332445 9999999774
No 171
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=82.13 E-value=17 Score=30.55 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch-----HHHHHhhcccccCCCCCeEEEEcCCCCCCCCC
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH-----AKIIASMQGKAENSSSQIMLVSIPDGLDLQAD 83 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (398)
|++-.|.+++..+.|=....+++|-+.+.+|++|.++-.-... ..+-+. .+++.+.....++.-...
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~--------l~~v~~~~~g~~~~~~~~ 91 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF--------GGGVEFHVMGTGFTWETQ 91 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc--------CCCcEEEECCCCCcccCC
Confidence 5667899999999999999999999999999999998653322 122211 247888887765432211
Q ss_pred -CCCCH---HHHHhhchhhccCC-ccEEEecCcch
Q 042709 84 -EREDP---HKLMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 84 -~~~~~---~~~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
..++. ...++...+.+.+. +|+||.|....
T Consensus 92 ~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 92 DRERDIAAAREGWEEAKRMLADESYDLVVLDELTY 126 (191)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 11111 12233333333556 99999998864
No 172
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=81.99 E-value=5 Score=30.64 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=35.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAK 53 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 53 (398)
|+++.+.+..-|-.-...++..|.++||+|.++......+.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~ 42 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEE 42 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHH
Confidence 78899999999999999999999999999999966543333
No 173
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=81.65 E-value=2.7 Score=30.80 Aligned_cols=83 Identities=14% Similarity=0.012 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCC-ccEE
Q 042709 28 LMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTEC-TACV 106 (398)
Q Consensus 28 ~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pD~v 106 (398)
++.+|+.|.+.|+ .+++++.....+.+. |+....+-.....+.....+. ...+.+++. +|+|
T Consensus 2 ~~~~a~~l~~lG~--~i~AT~gTa~~L~~~----------Gi~~~~v~~~~~~~~~~~g~~-----~i~~~i~~~~IdlV 64 (95)
T PF02142_consen 2 IVPLAKRLAELGF--EIYATEGTAKFLKEH----------GIEVTEVVNKIGEGESPDGRV-----QIMDLIKNGKIDLV 64 (95)
T ss_dssp HHHHHHHHHHTTS--EEEEEHHHHHHHHHT----------T--EEECCEEHSTG-GGTHCH-----HHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCC--EEEEChHHHHHHHHc----------CCCceeeeeecccCccCCchh-----HHHHHHHcCCeEEE
Confidence 5789999999995 567788888888877 566555432111110000001 233333565 9999
Q ss_pred EecCcchh---------HHHHHHHhCCceE
Q 042709 107 IADISVGW---------ALEVAEAIGIARA 127 (398)
Q Consensus 107 i~D~~~~~---------~~~~A~~lgiP~v 127 (398)
|.-+.-.- -..+|...+||++
T Consensus 65 In~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 65 INTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp EEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred EEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 98766431 2567778899886
No 174
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.43 E-value=6.4 Score=36.16 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=35.1
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 042709 12 PHVLVIPF-PALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA 52 (398)
Q Consensus 12 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 52 (398)
+||+|++. ++-|=..-..++|-.|++.|.+|.+++++.-..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 68887777 889999999999999999999988888765443
No 175
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=80.81 E-value=11 Score=30.78 Aligned_cols=93 Identities=17% Similarity=0.110 Sum_probs=57.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEE---EeCc--cchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCC-CC
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTF---VNTE--FIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADE-RE 86 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~---~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 86 (398)
-|.+++.++.|=....+++|-+.+.+|++|.| +-.. ..+..+.+. .+++++.....++.-.... ..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~--------l~~v~~~~~g~~~~~~~~~~~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER--------LPNIEIHRMGRGFFWTTENDEE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHh--------CCCcEEEECCCCCccCCCChHH
Confidence 37788889999999999999999999999999 4442 222222222 1478888876543221101 11
Q ss_pred CH---HHHHhhchhhccCC-ccEEEecCcch
Q 042709 87 DP---HKLMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 87 ~~---~~~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
+. ...++...+.+... +|+||.|....
T Consensus 76 ~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 76 DIAAAAEGWAFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEechHh
Confidence 11 11222223333555 99999998864
No 176
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=80.25 E-value=11 Score=35.17 Aligned_cols=105 Identities=7% Similarity=0.016 Sum_probs=69.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHHhhcccccCCCCCeE-EEEcCCCCCCCCCCCCC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEH--GIDVTFVNTEFIHAKIIASMQGKAENSSSQIM-LVSIPDGLDLQADERED 87 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 87 (398)
.+|||++-....|++.-...+.+.|+++ +.+|++++.+.+.+.++.. +.+. ++.++..- .. ....
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------P~id~vi~~~~~~--~~-~~~~ 72 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN---------PEINALYGIKNKK--AG-ASEK 72 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC---------CCceEEEEecccc--cc-HHHH
Confidence 3789999999999999999999999997 8999999999988776544 2442 33333110 00 0001
Q ss_pred HHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEE
Q 042709 88 PHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAA 128 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~ 128 (398)
..... .+...++.. +|++|.=........++...|.|...
T Consensus 73 ~~~~~-~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 73 IKNFF-SLIKVLRANKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HHHHH-HHHHHHhhCCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 11111 222333555 99999655444556777777888754
No 177
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=80.25 E-value=1.3 Score=37.12 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCcc
Q 042709 10 RQPHVLVIPFPALGHVAP------------LMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
+++|||+...|+.=.+.| -..||+++..||++|+++..+.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 467788877777665554 3689999999999999999985
No 178
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=80.20 E-value=8.7 Score=37.10 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHH----HHHhhcccccCCCCCeEEEEcCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAK----IIASMQGKAENSSSQIMLVSIPDGLDLQADER 85 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (398)
+++|++++.-+ .-.+++++.|.+-|-+|..+.+...... +.+..... ...++.... ..
T Consensus 302 ~gkrv~i~g~~-----~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~v~-----------~~ 363 (435)
T cd01974 302 HGKKFALYGDP-----DFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDAS--PYGAGAKVY-----------PG 363 (435)
T ss_pred CCCEEEEEcCh-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhc--CCCCCcEEE-----------EC
Confidence 46788877533 3488899999999999977776433222 22111000 000011110 22
Q ss_pred CCHHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 86 EDPHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
.+..++.+.+ +.. ||++|.... ...+|+++|||++.+.
T Consensus 364 ~d~~e~~~~i----~~~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 364 KDLWHLRSLL----FTEPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred CCHHHHHHHH----hhcCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 3344444333 344 999999864 7899999999998754
No 179
>PRK10125 putative glycosyl transferase; Provisional
Probab=80.05 E-value=9 Score=36.62 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=30.0
Q ss_pred CEEEEE--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 12 PHVLVI--PFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 12 ~~il~~--~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
||||.+ .....|-=--++.|++.|.++||+|.++.....
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~ 41 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGK 41 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 577743 334556666789999999999999999988543
No 180
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.92 E-value=11 Score=33.33 Aligned_cols=92 Identities=15% Similarity=0.093 Sum_probs=51.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH-HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA-KIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHK 90 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
|+|+++..-+. -..|++.|.++||+|+..+...... .+.+.+ +..+. . ..+ +...
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g---------~~~v~-~-g~l--------~~~~ 56 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ---------ALTVH-T-GAL--------DPQE 56 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCccccccccC---------CceEE-E-CCC--------CHHH
Confidence 46666544332 5789999999999999877655432 222211 11111 0 111 1112
Q ss_pred HHhhchhhccCC-ccEEEecCcchh------HHHHHHHhCCceEEEcC
Q 042709 91 LMTEDPQADTEC-TACVIADISVGW------ALEVAEAIGIARAAFVP 131 (398)
Q Consensus 91 ~~~~~~~~~~~~-pD~vi~D~~~~~------~~~~A~~lgiP~v~~~~ 131 (398)
+.+.+.+. +|+||--.+-++ +..+|+.+|||++.+--
T Consensus 57 ----l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR 100 (256)
T TIGR00715 57 ----LREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFER 100 (256)
T ss_pred ----HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 22223455 886664443322 46788999999999753
No 181
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=79.88 E-value=5.4 Score=33.93 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKI 54 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 54 (398)
+.||++.+.++..|-....-++..|.++|++|++++..-..+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 57999999999999999999999999999999998865444433
No 182
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=79.29 E-value=9.3 Score=35.11 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=47.8
Q ss_pred CccCHHHHHHHHHHHHhCC-CeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhc
Q 042709 21 ALGHVAPLMKLATKIAEHG-IDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQAD 99 (398)
Q Consensus 21 ~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (398)
-.|-+=|.+.|.+.|.+-| .--|+++.+++- .++..+....+.+.+
T Consensus 30 ~~g~vGp~~~l~~~l~~~~eIv~TiiCGDnyf---------------------------------~en~eea~~~i~~mv 76 (349)
T PF07355_consen 30 REGPVGPGLMLEKALKDDAEIVATIICGDNYF---------------------------------NENKEEALKKILEMV 76 (349)
T ss_pred ccCCCChHHHHHHHhcCCCEEEEEEEECcchh---------------------------------hhCHHHHHHHHHHHH
Confidence 3466778888888887633 223455554432 122233344444554
Q ss_pred cCC-ccEEEecCcchhH----------HHHHHHhCCceEEEc
Q 042709 100 TEC-TACVIADISVGWA----------LEVAEAIGIARAAFV 130 (398)
Q Consensus 100 ~~~-pD~vi~D~~~~~~----------~~~A~~lgiP~v~~~ 130 (398)
++. ||+||+-+.|..+ ..+.+.++||.++-.
T Consensus 77 ~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 77 KKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 666 9999999988632 245668999998643
No 183
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=78.48 E-value=5.9 Score=31.38 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=39.8
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHH
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAK 53 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 53 (398)
+++.||++.+.+..||-.-.--+++.|++.|.+|...+.-...+.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e 54 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEE 54 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHH
Confidence 789999999999999999999999999999999999876544443
No 184
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=78.45 E-value=19 Score=27.02 Aligned_cols=83 Identities=16% Similarity=0.063 Sum_probs=53.3
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCC
Q 042709 23 GHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTEC 102 (398)
Q Consensus 23 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (398)
++-.-++.+++.|.+.|+++ ++++.....+.+. |+....+.... . .. .+.. +.+++.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~~~----------gi~~~~v~~~~--~--~~---~~i~----~~i~~~ 66 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL--VATEGTAKYLQEA----------GIPVEVVNKVS--E--GR---PNIV----DLIKNG 66 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE--EEchHHHHHHHHc----------CCeEEEEeecC--C--Cc---hhHH----HHHHcC
Confidence 45567889999999999988 4566777777766 45544442111 0 11 1122 222455
Q ss_pred -ccEEEecCc-------chhHHHHHHHhCCceEE
Q 042709 103 -TACVIADIS-------VGWALEVAEAIGIARAA 128 (398)
Q Consensus 103 -pD~vi~D~~-------~~~~~~~A~~lgiP~v~ 128 (398)
+|+||.-+. .+.-...|-.+|||++.
T Consensus 67 ~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 67 EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 999988432 24577889999999984
No 185
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=78.40 E-value=12 Score=35.85 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=35.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA 52 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 52 (398)
..|+++..++.|=..-...||..|.++|++|.+++...+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 34567777899999999999999999999999999987664
No 186
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.29 E-value=26 Score=31.47 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=51.7
Q ss_pred eecccC---cccccCCCCcceEEec---CCcch-HHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcC
Q 042709 272 IVEWAP---QENDLGHPSIAWFLSH---CGWNS-TMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIIT 344 (398)
Q Consensus 272 v~~~vp---q~~lL~~~~~~~~ItH---gG~~s-~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~ 344 (398)
..++++ ...++..+++ ++.. .|.|. +.||+.+|+|++.- +.......+.+ -+.|. +.. .-+
T Consensus 261 ~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~----~~~~~~e~~~~-~~~g~-~~~----~~~ 328 (381)
T COG0438 261 FLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIAS----DVGGIPEVVED-GETGL-LVP----PGD 328 (381)
T ss_pred EecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEEC----CCCChHHHhcC-CCceE-ecC----CCC
Confidence 346666 3335665666 6655 35544 59999999999774 44434444444 13466 422 126
Q ss_pred HHHHHHHHHHHhcCHHHHHHHH
Q 042709 345 RQEIQINVKALLKNDGIKGNSL 366 (398)
Q Consensus 345 ~~~l~~ai~~~l~~~~~~~~a~ 366 (398)
.+++.+++..++++.+.+++..
T Consensus 329 ~~~~~~~i~~~~~~~~~~~~~~ 350 (381)
T COG0438 329 VEELADALEQLLEDPELREELG 350 (381)
T ss_pred HHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999999999874444443
No 187
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=76.31 E-value=16 Score=33.70 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=66.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHHhhcccccCCCCCeE-EEEcCCCCCCCCCCCCCHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEH--GIDVTFVNTEFIHAKIIASMQGKAENSSSQIM-LVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (398)
|||++-..+.|++.-...+.+.|++. +.+|++++.+.+.+.++.. +.+. +..++.. . ......
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------p~id~v~~~~~~--~---~~~~~~ 66 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM---------PEIRQAIDMPLG--H---GALELT 66 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC---------chhceeeecCCc--c---cchhhh
Confidence 68999999999999999999999997 8999999998887776544 2332 2222211 0 111111
Q ss_pred HHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceE
Q 042709 90 KLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARA 127 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v 127 (398)
... .+...++.. +|++|.-........++...|+|.-
T Consensus 67 ~~~-~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 67 ERR-RLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred HHH-HHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCce
Confidence 111 222333555 9999987666566777777788764
No 188
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=76.08 E-value=16 Score=32.89 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=40.8
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCC
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPD 76 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
.+..+|+++-++++||.. |.-|++.|.+|++..-+.....-.+.- +|++..++.+
T Consensus 16 LkgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA~~--------dGf~V~~v~e 70 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKAKE--------DGFKVYTVEE 70 (338)
T ss_pred hcCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHHHh--------cCCEeecHHH
Confidence 357899999999999976 567899999999988776554332221 3677777754
No 189
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=76.04 E-value=5.5 Score=33.71 Aligned_cols=90 Identities=12% Similarity=0.191 Sum_probs=54.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLM 92 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (398)
-|+|+-..+-|=..-...||..+..+|.+|.+++...+..-..++.... ...-++.+.... ...+..+..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~--a~~l~vp~~~~~--------~~~~~~~~~ 72 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTY--AEILGVPFYVAR--------TESDPAEIA 72 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHH--HHHHTEEEEESS--------TTSCHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHH--HHHhccccchhh--------cchhhHHHH
Confidence 4567777788999999999999999999999999987654322221000 001267776643 222343444
Q ss_pred hhchhhccCC-ccEEEecCcc
Q 042709 93 TEDPQADTEC-TACVIADISV 112 (398)
Q Consensus 93 ~~~~~~~~~~-pD~vi~D~~~ 112 (398)
....+..+.. .|+|+.|...
T Consensus 73 ~~~l~~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 73 REALEKFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHHHHHHTTSSEEEEEE-S
T ss_pred HHHHHHHhhcCCCEEEEecCC
Confidence 3332333445 9999999764
No 190
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=75.87 E-value=26 Score=28.65 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=54.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHh
Q 042709 14 VLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMT 93 (398)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (398)
+++.-.++.|=......++..|+++|.+|.++..+.+.....+..... ....++.+.... ...++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~--~~~~~~~~~~~~--------~~~~~~~~~~ 72 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVL--GEQVGVPVFEEG--------EGKDPVSIAK 72 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHh--cccCCeEEEecC--------CCCCHHHHHH
Confidence 567788899999999999999999999999999876643322211000 111244444331 1123333332
Q ss_pred hchhhccCC-ccEEEecCcch
Q 042709 94 EDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 94 ~~~~~~~~~-pD~vi~D~~~~ 113 (398)
......... .|+||.|....
T Consensus 73 ~~~~~~~~~~~d~viiDt~g~ 93 (173)
T cd03115 73 RAIEHAREENFDVVIVDTAGR 93 (173)
T ss_pred HHHHHHHhCCCCEEEEECccc
Confidence 222222344 99999997643
No 191
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=75.71 E-value=33 Score=28.38 Aligned_cols=92 Identities=12% Similarity=0.117 Sum_probs=56.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE---eCc--cchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCC-C
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFV---NTE--FIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADER-E 86 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~---~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 86 (398)
-|.+++..+.|=..-.+.+|-+.+.+|++|.++ -.. ..+..+.+. .++.+.....++.-..... .
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~---------~~~~~~~~g~g~~~~~~~~~~ 77 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP---------HGVEFQVMGTGFTWETQNREA 77 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh---------cCcEEEECCCCCeecCCCcHH
Confidence 477888899999999999999999999999655 332 122222221 1688888776553221111 1
Q ss_pred C---HHHHHhhchhhccCC-ccEEEecCcch
Q 042709 87 D---PHKLMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 87 ~---~~~~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
+ ..+.++...+.+... +|+||.|....
T Consensus 78 ~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~ 108 (173)
T TIGR00708 78 DTAIAKAAWQHAKEMLADPELDLVLLDELTY 108 (173)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEehhhHH
Confidence 1 112233333333555 99999998764
No 192
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=75.43 E-value=8.3 Score=32.66 Aligned_cols=48 Identities=13% Similarity=0.017 Sum_probs=41.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
.+.+|++.+.++..|-....-++..|..+|++|++++..-..+.+.+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 457999999999999999999999999999999999987655554443
No 193
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=75.27 E-value=9.4 Score=26.84 Aligned_cols=37 Identities=27% Similarity=0.207 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
..-++++..+...|..-+-.+|+.|+++|..|..+-.
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4678888899999999999999999999999886543
No 194
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=75.00 E-value=14 Score=35.49 Aligned_cols=91 Identities=15% Similarity=0.225 Sum_probs=55.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHK 90 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
.-|+++..++.|=..-...||..|. ++|.+|.+++...+......+.... ....++.+...+ ...++..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~--a~~~gvp~~~~~--------~~~~P~~ 169 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVL--GQQVGVPVFALG--------KGQSPVE 169 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHH--HHhcCCceEecC--------CCCCHHH
Confidence 3455777789999999999999997 6899999999987765432211000 011244544432 1122333
Q ss_pred HHhhchhhccCC-ccEEEecCcc
Q 042709 91 LMTEDPQADTEC-TACVIADISV 112 (398)
Q Consensus 91 ~~~~~~~~~~~~-pD~vi~D~~~ 112 (398)
+.....+..... +|+||.|...
T Consensus 170 i~~~al~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 170 IARRALEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCC
Confidence 332222222345 9999999774
No 195
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=74.98 E-value=5 Score=33.51 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=35.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKII 55 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 55 (398)
+||++...++.|=+ -...+.+.|.++|++|.++.+++-...+.
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 67888888775544 48999999999999999999988766654
No 196
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=74.95 E-value=10 Score=34.74 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHK 90 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
+--|+|+-.-+.|-..-.-.||..|.+.|+.|.++....|..-..++.... ...-|+.++.-..+- +...-
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w--~er~gv~vI~~~~G~-------DpAaV 209 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVW--GERLGVPVISGKEGA-------DPAAV 209 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHH--HHHhCCeEEccCCCC-------CcHHH
Confidence 455678888899999999999999999999999999999987654443111 001256665542221 11223
Q ss_pred HHhhchhhccCC-ccEEEecCc
Q 042709 91 LMTEDPQADTEC-TACVIADIS 111 (398)
Q Consensus 91 ~~~~~~~~~~~~-pD~vi~D~~ 111 (398)
.++.+..+ +.+ .|+||+|..
T Consensus 210 afDAi~~A-kar~~DvvliDTA 230 (340)
T COG0552 210 AFDAIQAA-KARGIDVVLIDTA 230 (340)
T ss_pred HHHHHHHH-HHcCCCEEEEeCc
Confidence 34444333 445 999999965
No 197
>PRK14099 glycogen synthase; Provisional
Probab=74.89 E-value=15 Score=35.99 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=41.3
Q ss_pred CCCcceEEe---cCCcc-hHHHHHhcCCceecccCcc--chhhHHHhhccc--eeeEEEecCCCCCCcCHHHHHHHHHH-
Q 042709 284 HPSIAWFLS---HCGWN-STMEGLSMGVPFLCWPSFA--DQHHNRNYICDV--WKIGVQLLPDENGIITRQEIQINVKA- 354 (398)
Q Consensus 284 ~~~~~~~It---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~--~g~g~~l~~~~~~~~~~~~l~~ai~~- 354 (398)
.+++ ||. +=|.| +.+||+++|+|.|+-...+ |.-.......+. -+.|+.++. -++++|.++|.+
T Consensus 369 ~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~-----~d~~~La~ai~~a 441 (485)
T PRK14099 369 GADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP-----VTADALAAALRKT 441 (485)
T ss_pred cCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC-----CCHHHHHHHHHHH
Confidence 3455 775 34444 6789999997766644321 211111111000 046777744 489999999987
Q ss_pred --HhcCHHHH
Q 042709 355 --LLKNDGIK 362 (398)
Q Consensus 355 --~l~~~~~~ 362 (398)
+++|+..+
T Consensus 442 ~~l~~d~~~~ 451 (485)
T PRK14099 442 AALFADPVAW 451 (485)
T ss_pred HHHhcCHHHH
Confidence 66676543
No 198
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=74.67 E-value=25 Score=35.06 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=46.4
Q ss_pred CcccccCCCCcceEEe---cCCcc-hHHHHHhcCCceecccCcc-chhhHHHhhccceeeEEEecCCCCC--CcCHHHHH
Q 042709 277 PQENDLGHPSIAWFLS---HCGWN-STMEGLSMGVPFLCWPSFA-DQHHNRNYICDVWKIGVQLLPDENG--IITRQEIQ 349 (398)
Q Consensus 277 pq~~lL~~~~~~~~It---HgG~~-s~~eal~~GvP~v~~P~~~-DQ~~na~~~~~~~g~g~~l~~~~~~--~~~~~~l~ 349 (398)
+..++++.+++ ||. +=|+| ++.||+.+|+|+|+-...+ ..... ..+...-..|+.+...... .-+.++|.
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 35566777777 655 34544 8999999999999965421 11111 1111100256666532111 23567888
Q ss_pred HHHHHHhcC
Q 042709 350 INVKALLKN 358 (398)
Q Consensus 350 ~ai~~~l~~ 358 (398)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 888888854
No 199
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=74.42 E-value=17 Score=33.71 Aligned_cols=104 Identities=6% Similarity=-0.016 Sum_probs=69.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHHhhcccccCCCCCeE-EEEcCCCCCCCCCCCCCHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEH--GIDVTFVNTEFIHAKIIASMQGKAENSSSQIM-LVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (398)
|||++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+.++.. +.+. +..++...... ....+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------p~vd~vi~~~~~~~~~--~~~~~~ 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN---------PDINALYGLDRKKAKA--GERKLA 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC---------CCccEEEEeChhhhcc--hHHHHH
Confidence 68999999999999999999999996 8999999999988777654 3443 44443221000 000111
Q ss_pred HHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEE
Q 042709 90 KLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAA 128 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~ 128 (398)
.... +...++.. +|++|.=........++...|+|.-.
T Consensus 70 ~~~~-l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 NQFH-LIKVLRANRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHH-HHHHHHhCCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 2222 22233555 99998655445677888888999754
No 200
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=74.32 E-value=2.8 Score=30.87 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=22.4
Q ss_pred CcchHHhhhcCCCCcEEEEEeCCccc
Q 042709 233 DSTCLSWRDKQAIGSVTYVAFGRFSI 258 (398)
Q Consensus 233 ~~~~~~~l~~~~~~~vVyvs~Gs~~~ 258 (398)
+..+.+|+...+.++.|++|+||...
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~ 52 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVR 52 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCcc
Confidence 45677899999999999999999865
No 201
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=74.31 E-value=6.9 Score=32.74 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=37.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCccchHHHHHh
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAE-HGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~ 57 (398)
+||++.-.++.| .+=...|++.|.+ .||+|.++.++.-...+...
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~ 47 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAHE 47 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHH
Confidence 688888888766 7779999999999 59999999999888777643
No 202
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=74.17 E-value=31 Score=26.06 Aligned_cols=83 Identities=19% Similarity=0.115 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccC-C
Q 042709 24 HVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTE-C 102 (398)
Q Consensus 24 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 102 (398)
+=.-++.+|+.|.+.|+++ ++++.....+++. |+....+.... .+ .. .+.. +.+++ .
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~----------Gi~~~~v~~~~-~~--g~---~~i~----~~i~~~g 67 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADA----------GIPVRAVSKRH-ED--GE---PTVD----AAIAEKG 67 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHc----------CCceEEEEecC-CC--CC---cHHH----HHHhCCC
Confidence 4456889999999999987 4666777777775 56555542211 10 01 1122 22234 5
Q ss_pred -ccEEEe--cCcc--------hhHHHHHHHhCCceEE
Q 042709 103 -TACVIA--DISV--------GWALEVAEAIGIARAA 128 (398)
Q Consensus 103 -pD~vi~--D~~~--------~~~~~~A~~lgiP~v~ 128 (398)
+|+||. |... +.-...|-..|||++.
T Consensus 68 ~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 68 KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 888887 3222 2345678888999986
No 203
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=74.17 E-value=8.9 Score=29.56 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=36.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKI 54 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 54 (398)
||++.+.++..|-.-..-++..|...|++|++.+.....+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 688999999999999999999999999999999986444443
No 204
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=74.06 E-value=51 Score=35.12 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=59.8
Q ss_pred ccCccc---ccCCCCcceEEe---cCCcchH-HHHHhcCC---ceecccCccchhhHHHhhcccee-eEEEecCCCCCCc
Q 042709 275 WAPQEN---DLGHPSIAWFLS---HCGWNST-MEGLSMGV---PFLCWPSFADQHHNRNYICDVWK-IGVQLLPDENGII 343 (398)
Q Consensus 275 ~vpq~~---lL~~~~~~~~It---HgG~~s~-~eal~~Gv---P~v~~P~~~DQ~~na~~~~~~~g-~g~~l~~~~~~~~ 343 (398)
.+|+.+ +++-+++ |+. .-|+|.+ .|++.++. -+++++-+ -.-|. . +| -|+.+.+ .
T Consensus 447 ~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf---aGaa~---~-L~~~AllVNP-----~ 512 (934)
T PLN03064 447 SLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF---AGAAQ---S-LGAGAILVNP-----W 512 (934)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCC---CchHH---H-hCCceEEECC-----C
Confidence 355443 4555666 654 4488855 49999954 12222221 11222 2 43 4677743 6
Q ss_pred CHHHHHHHHHHHhc-CH-HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 042709 344 TRQEIQINVKALLK-ND-GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVL 396 (398)
Q Consensus 344 ~~~~l~~ai~~~l~-~~-~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 396 (398)
+.+++.++|.+.|+ ++ +-+++.+++.+... .-+...-++.|+++|.+.
T Consensus 513 D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 513 NITEVAASIAQALNMPEEEREKRHRHNFMHVT-----THTAQEWAETFVSELNDT 562 (934)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHHH
Confidence 89999999999987 44 34444444444443 245566677777777654
No 205
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=73.97 E-value=9.3 Score=35.05 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
|.+|||+++-.++.| ..+|..|++.||+|++++-.. .+.+.+.
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~~ 45 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVREN 45 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHhC
Confidence 556899999888877 456788999999999998865 3444444
No 206
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=73.59 E-value=3.8 Score=39.65 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=50.5
Q ss_pred ceEEecCC--c-chHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCHHHHHH
Q 042709 288 AWFLSHCG--W-NSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKNDGIKGN 364 (398)
Q Consensus 288 ~~~ItHgG--~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~ 364 (398)
+++++-.+ . =++.||+++|+|+++. ++..=+..+.. .--|...++ +.-....+.+++.++..|+.++.+
T Consensus 368 ~v~~qPa~E~FGiv~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp---~~e~~~~~a~~~~kl~~~p~l~~~ 439 (495)
T KOG0853|consen 368 GVLYQPANEHFGIVPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDP---GQEAVAELADALLKLRRDPELWAR 439 (495)
T ss_pred eEEecCCCCCccceeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCC---chHHHHHHHHHHHHHhcCHHHHHH
Confidence 34666555 1 2789999999999984 56666666666 356777754 222334799999999999987766
Q ss_pred HHH
Q 042709 365 SLK 367 (398)
Q Consensus 365 a~~ 367 (398)
+.+
T Consensus 440 ~~~ 442 (495)
T KOG0853|consen 440 MGK 442 (495)
T ss_pred HHH
Confidence 654
No 207
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=73.38 E-value=27 Score=33.69 Aligned_cols=98 Identities=11% Similarity=0.140 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
.+.|++++. +-.-..++++.|.+.|-++..+.+........+..........++.... ...+..
T Consensus 299 ~gkrv~v~g-----~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~-----------~~~d~~ 362 (429)
T cd03466 299 FGRKAAIYG-----EPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVIL-----------DGADFF 362 (429)
T ss_pred CCCEEEEEc-----CHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEE-----------eCCCHH
Confidence 456777665 3446778889999999998666654432222211000000000111110 122333
Q ss_pred HHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 90 KLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
++.+.+ +.. ||++|.+.. ...+|+++|||++.+.
T Consensus 363 e~~~~l----~~~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 363 DIESYA----KELKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHH----HhcCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 333333 345 999999975 6799999999998754
No 208
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=73.36 E-value=31 Score=30.47 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=43.7
Q ss_pred cEEEEEeCCcccCCHHHHHHhhc-------ccee-----cccCcccccCCCCcceEEecCCcchHHHHHhcCCceecc
Q 042709 247 SVTYVAFGRFSILGQEQLEQLAL-------GKIV-----EWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCW 312 (398)
Q Consensus 247 ~vVyvs~Gs~~~~~~~~~~~~~~-------~~v~-----~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~ 312 (398)
..+++||.- ..++.+..+.. +.+. ++=|+.+.|+-++. .++|--..|...||.+.|+|+.++
T Consensus 198 ~~~lisfSR---RTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 198 GSFLISFSR---RTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred ceEEEEeec---CCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 378999854 35555555443 3332 44588899987776 356777789999999999999654
No 209
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=73.32 E-value=27 Score=34.35 Aligned_cols=97 Identities=9% Similarity=0.043 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhccc----ccCC-CCCeEEEEcCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGK----AENS-SSQIMLVSIPDGLDLQADE 84 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~ 84 (398)
++.-+++...|+.|=..=.+.++...+++|.+|.|++.+...+.+.+..... .+.. ...+.+.... | .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~---p----~ 334 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAY---P----E 334 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcc---c----c
Confidence 3456788888999999999999999999999999999998877765542111 0000 0013333321 1 1
Q ss_pred CCCHHHHHhhchhhccCC-ccEEEecCcch
Q 042709 85 REDPHKLMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
...+..++..+.+..++. ||+||.|+...
T Consensus 335 ~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 335 SAGLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred cCChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 122345566666665666 99999999874
No 210
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=73.24 E-value=37 Score=30.33 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=67.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCccchHHHHHhhcccccCCCCCeE-EEEcCCCCCCCCCCCCCHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHG--IDVTFVNTEFIHAKIIASMQGKAENSSSQIM-LVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (398)
|||++-..+.|++.-+..+.+.|+++. -+|++++.+.+.+.++.. +.+. +..++... ......
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~---------p~id~v~~~~~~~-----~~~~~~ 66 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM---------PEVDRVIVLPKKH-----GKLGLG 66 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC---------CccCEEEEcCCcc-----cccchH
Confidence 689999999999999999999999975 899999999888777654 2332 23332111 011122
Q ss_pred HHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEE
Q 042709 90 KLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAA 128 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~ 128 (398)
.+.. +...++.. +|+++.=........++...+++...
T Consensus 67 ~~~~-~~~~l~~~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 67 ARRR-LARALRRRRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred HHHH-HHHHHhhcCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 2222 22222455 99998776666555677777877754
No 211
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=72.55 E-value=29 Score=33.51 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
.++|+++...+ ....++++.|.+-|-+|..+......+...+.. .+ .. ..+|..
T Consensus 310 ~Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~--------~~--------~~-----~~~D~~ 363 (432)
T TIGR01285 310 GGKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLP--------VE--------TV-----VIGDLE 363 (432)
T ss_pred CCCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCC--------cC--------cE-----EeCCHH
Confidence 46888777533 467899999999999998888766544322110 01 00 123343
Q ss_pred HHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 90 KLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
++.+ .+++. ||++|.... +..+|+++|||++.+.
T Consensus 364 ~l~~----~i~~~~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 DLED----LACAAGADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred HHHH----HHhhcCCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 3332 32455 999998864 6889999999998754
No 212
>PRK09620 hypothetical protein; Provisional
Probab=72.49 E-value=5.8 Score=34.51 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCc
Q 042709 9 CRQPHVLVIPFPALGHVAP------------LMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~ 48 (398)
|++++|++...|+.=.+.| =..||++|.++|++|+++...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4678888887775544333 257899999999999999765
No 213
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=71.36 E-value=8 Score=32.39 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=34.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA 52 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 52 (398)
+||++.-.++.|=+.-.+.+.+.|.++|++|+++.++.-..
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 36888888887777777799999999999999999887653
No 214
>PLN02939 transferase, transferring glycosyl groups
Probab=71.05 E-value=22 Score=37.72 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 9 CRQPHVLVIPFP------ALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 9 m~~~~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
-.+|||+|++.- +.|=-...-+|.++|+++||+|.+++|...
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 347999988752 334445677899999999999999999653
No 215
>PRK05920 aromatic acid decarboxylase; Validated
Probab=70.90 E-value=8.6 Score=32.72 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=36.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIA 56 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 56 (398)
.+||++.-.++ +..+=...+.+.|.+.||+|.++.++.-...+..
T Consensus 3 ~krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 47788777765 4457899999999999999999999887776654
No 216
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=70.35 E-value=43 Score=32.20 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=56.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc----chHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCC
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF----IHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERED 87 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (398)
.|+.++..+.. .+++++.|.+-|-+|+.+++.. +.+...+... . +..... ...+
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~~~--------~-----~~~~v~----~~~d 343 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRWLE--------M-----LGVEVK----YRAS 343 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHHHH--------h-----cCCCce----eccC
Confidence 38888887765 8999999999999999987763 2222222110 0 000000 1123
Q ss_pred HHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 88 PHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
+....+ .+++. ||++|.... +..+|+++|||.+.+.
T Consensus 344 l~~~~~----~l~~~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 344 LEDDME----AVLEFEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred HHHHHH----HHhhCCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 332222 22455 999999844 7788999999999855
No 217
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=68.90 E-value=10 Score=36.14 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=40.0
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 8 SCRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 8 ~m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
.|+++||++.-.++. ..+=...|.+.|.++|++|.++.+++-...+...
T Consensus 3 ~l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~ 51 (399)
T PRK05579 3 MLAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTPL 51 (399)
T ss_pred CCCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHH
Confidence 456789998888764 5668899999999999999999998877666543
No 218
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=68.90 E-value=14 Score=31.66 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIA 56 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 56 (398)
++.||++.+.++..|-....-++..|..+|++|++++..--.+.+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~ 133 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILE 133 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHH
Confidence 46799999999999999999999999999999999997654444433
No 219
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=68.32 E-value=8.1 Score=32.80 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=35.6
Q ss_pred ccccccCCCCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 3 TQVQLSCRQPHVLVIPF--PALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 3 ~~~~~~m~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
+.++..+.++|++.+.. ++.|=..-...||..|+++|++|.++=....
T Consensus 8 ~~l~~~~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 8 TNIQFSGAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred HHHhhhcCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34445555567665544 5778899999999999999999999865433
No 220
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=68.20 E-value=27 Score=26.48 Aligned_cols=85 Identities=16% Similarity=0.065 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCC-
Q 042709 24 HVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTEC- 102 (398)
Q Consensus 24 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 102 (398)
+-.-++.+++.|.+.|+++ ++++...+.+.+. ++....+......+ ..+-....+. +++.
T Consensus 11 dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~----------gi~~~~v~~~~~~~---~~~~~~i~~~----i~~~~ 71 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKL--YATEGTADFLLEN----------GIPVTPVAWPSEEP---QNDKPSLREL----LAEGK 71 (116)
T ss_pred cchhHHHHHHHHHHCCCEE--EEccHHHHHHHHc----------CCCceEeeeccCCC---CCCchhHHHH----HHcCC
Confidence 4456889999999999888 4677777777765 45444432111001 1001222222 2345
Q ss_pred ccEEEecCc---------chhHHHHHHHhCCceE
Q 042709 103 TACVIADIS---------VGWALEVAEAIGIARA 127 (398)
Q Consensus 103 pD~vi~D~~---------~~~~~~~A~~lgiP~v 127 (398)
+|+||.-+. .+.-...|-.+|||++
T Consensus 72 idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 72 IDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred ceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 999988432 2356778889999996
No 221
>PRK14974 cell division protein FtsY; Provisional
Probab=67.61 E-value=24 Score=32.72 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=34.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
..|+|+..++.|=..-...||..|.++|++|.+++...+.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 4566888889999999999999999999999999887554
No 222
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=67.50 E-value=15 Score=29.94 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIP 75 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 75 (398)
.|||.+.-.|+.|-..-.+.+++.|.++|+.|-=+-++...+-=.. .||+.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR----------~GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR----------IGFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE----------eeeEEEEcc
Confidence 4899999999999999999999999999999986666654422112 278888886
No 223
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=67.32 E-value=11 Score=34.09 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=55.7
Q ss_pred eecccC---cccccCCCCcceEEec--CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHH
Q 042709 272 IVEWAP---QENDLGHPSIAWFLSH--CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQ 346 (398)
Q Consensus 272 v~~~vp---q~~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~ 346 (398)
+..++| +..+|+.++++.|+++ =|.|++.-.+..|+|+++- -+-+.+.... + .|+-+-.+. +.++..
T Consensus 211 L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~-e-~gv~Vlf~~---d~L~~~ 282 (322)
T PRK02797 211 LTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT-E-QGLPVLFTG---DDLDED 282 (322)
T ss_pred hhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH-h-CCCeEEecC---CcccHH
Confidence 335555 6679999999999886 5899999999999999986 3444444433 3 377776554 667888
Q ss_pred HHHHHHHHHh
Q 042709 347 EIQINVKALL 356 (398)
Q Consensus 347 ~l~~ai~~~l 356 (398)
.+.++=+++.
T Consensus 283 ~v~e~~rql~ 292 (322)
T PRK02797 283 IVREAQRQLA 292 (322)
T ss_pred HHHHHHHHHH
Confidence 8877755443
No 224
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=67.25 E-value=30 Score=29.33 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=56.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc-chHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF-IHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHK 90 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
.-+.++-.|+.|=..-.+.++....+.|..|.|++++. ..+++.+............+.+.... ...+...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~ 84 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVF--------DFDEQGV 84 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECC--------CHHHHHH
Confidence 34557777899999999999999999999999999986 44444443210000001123332221 1112223
Q ss_pred HHhhchhhccCC-ccEEEecCcch
Q 042709 91 LMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 91 ~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
.+..+.+.+++. +++||.|....
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHH
Confidence 344444444555 99999998864
No 225
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=67.08 E-value=7.9 Score=37.78 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=26.7
Q ss_pred EEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 13 HVLVIPFP------ALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 13 ~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
||+++++- ..|=-.-.-.|+++|+++||+|+++++...
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~ 44 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYG 44 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCc
Confidence 45655542 233344456799999999999999997543
No 226
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=67.08 E-value=8.5 Score=35.17 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=34.4
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCccchHH
Q 042709 12 PHVLVIPF-PALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAK 53 (398)
Q Consensus 12 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 53 (398)
||++|+.. |+-|=..-..++|-.++++|++|.+++++.....
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccH
Confidence 46776666 7889999999999999999999999999876543
No 227
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=66.88 E-value=36 Score=30.47 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=33.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
..|+|+..++.|=..-...||..|+++|++|.++....+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 3455777779999999999999999999999999987653
No 228
>PRK14098 glycogen synthase; Provisional
Probab=66.79 E-value=9.5 Score=37.51 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=31.0
Q ss_pred CEEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPFP------ALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|||+|++.- +.|=-...-+|.++|+++||+|.++.|..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 899988753 44555667889999999999999999854
No 229
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=66.59 E-value=4.7 Score=32.69 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=26.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
||.++..+..|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 567777776665 78999999999999999975
No 230
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=66.48 E-value=13 Score=35.93 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=55.4
Q ss_pred cccC--cccccCCCCcceEEecCC--cchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHH
Q 042709 274 EWAP--QENDLGHPSIAWFLSHCG--WNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQ 349 (398)
Q Consensus 274 ~~vp--q~~lL~~~~~~~~ItHgG--~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~ 349 (398)
++.+ -.+++..|++=+-|+||. ..++.||+.+|+|++..=... .+...+.. |--... -+.+++.
T Consensus 335 ~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~---~~~~~i~~----g~l~~~-----~~~~~m~ 402 (438)
T TIGR02919 335 NITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETA---HNRDFIAS----ENIFEH-----NEVDQLI 402 (438)
T ss_pred CcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEeccc---CCcccccC----CceecC-----CCHHHHH
Confidence 4444 345888899877788866 569999999999999863221 11112211 333432 3689999
Q ss_pred HHHHHHhcCHH-HHHHHHHHHH
Q 042709 350 INVKALLKNDG-IKGNSLKLKE 370 (398)
Q Consensus 350 ~ai~~~l~~~~-~~~~a~~l~~ 370 (398)
++|.++|.|++ ++++..+-++
T Consensus 403 ~~i~~lL~d~~~~~~~~~~q~~ 424 (438)
T TIGR02919 403 SKLKDLLNDPNQFRELLEQQRE 424 (438)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999984 4554444333
No 231
>PLN02316 synthase/transferase
Probab=66.46 E-value=11 Score=40.29 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=31.2
Q ss_pred CCCEEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 10 RQPHVLVIPFP------ALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 10 ~~~~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
.+|||++++.- ..|=-.-.-+|+++|+++||+|.++++...
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 46899988752 223334467899999999999999999654
No 232
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.19 E-value=16 Score=32.83 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=53.0
Q ss_pred eecccCcccccCCCCcceEEecCC--------------cchH-HHHHhcCCceecccCccchhhHH--HhhccceeeEEE
Q 042709 272 IVEWAPQENDLGHPSIAWFLSHCG--------------WNST-MEGLSMGVPFLCWPSFADQHHNR--NYICDVWKIGVQ 334 (398)
Q Consensus 272 v~~~vpq~~lL~~~~~~~~ItHgG--------------~~s~-~eal~~GvP~v~~P~~~DQ~~na--~~~~~~~g~g~~ 334 (398)
-.+|-|+.+++..-++.+..+.-- .||. -+++--|+|+|.+|-.+-|+.-. .|=.+-+|+.+.
T Consensus 281 ~~gWq~~ad~~~kdnc~l~lsqqsfadiLH~adaalgmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~slt 360 (412)
T COG4370 281 RQGWQPLADRFGKDNCSLWLSQQSFADILHAADAALGMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLT 360 (412)
T ss_pred hcCcchhhhhhccCceEEEEeHHHHHHHHHHHHHHHHhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceee
Confidence 346666666666333322433222 2232 33567899999999999886543 333343677777
Q ss_pred ecCCCCCCcCHHHHHHHHHHHhcCHHHHHHHH
Q 042709 335 LLPDENGIITRQEIQINVKALLKNDGIKGNSL 366 (398)
Q Consensus 335 l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~ 366 (398)
+-. -.++.-..+..+++.|+.+..+++
T Consensus 361 lv~-----~~aq~a~~~~q~ll~dp~r~~air 387 (412)
T COG4370 361 LVR-----PEAQAAAQAVQELLGDPQRLTAIR 387 (412)
T ss_pred ecC-----CchhhHHHHHHHHhcChHHHHHHH
Confidence 743 223333334445999998777766
No 233
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=66.15 E-value=13 Score=35.31 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
+++||++.-.++ +..+-.+.+.+.|.+.|++|.++.++.-...+...
T Consensus 2 ~~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 2 ENKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 568898888876 44566999999999999999999998877766543
No 234
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=65.97 E-value=8.9 Score=37.24 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=36.9
Q ss_pred cCCCCEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCcc
Q 042709 8 SCRQPHVLVIPFPALGHVAPL------------MKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 8 ~m~~~~il~~~~~~~GH~~p~------------l~La~~L~~rGh~Vt~~~~~~ 49 (398)
.++++|||+...|+.=.+.|. .+||+++..||++||+++.+.
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 368999999999998888775 689999999999999999765
No 235
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=65.71 E-value=9.6 Score=33.54 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=25.2
Q ss_pred EEEEEcCC------CccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 13 HVLVIPFP------ALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 13 ~il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
||+++++- ..|=-...-+|+++|+++||+|++++|..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 46666542 23444557789999999999999999966
No 236
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=65.55 E-value=30 Score=33.34 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=36.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA 52 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 52 (398)
+..|+|+..++.|=..-...||..|.++|++|.+++.+.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 456778888899999999999999999999999999987654
No 237
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=65.16 E-value=16 Score=37.92 Aligned_cols=107 Identities=12% Similarity=0.047 Sum_probs=63.2
Q ss_pred cccCccc---ccCCCCcceEEec---CCcc-hHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHH
Q 042709 274 EWAPQEN---DLGHPSIAWFLSH---CGWN-STMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQ 346 (398)
Q Consensus 274 ~~vpq~~---lL~~~~~~~~ItH---gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~ 346 (398)
+++++.+ +++.+++ |+.- -|+| .+.|++.+|+|-...|...+--.-+. + +.-|+.+++ .+.+
T Consensus 348 ~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-----~d~~ 416 (726)
T PRK14501 348 RSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-----NDIE 416 (726)
T ss_pred CCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-----CCHH
Confidence 5566654 5566676 7654 3544 77899999775222222111111111 1 223666644 5799
Q ss_pred HHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 042709 347 EIQINVKALLKND--GIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVL 396 (398)
Q Consensus 347 ~l~~ai~~~l~~~--~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 396 (398)
++.++|.++++++ +.+++.+++.+.+. .-+...-+++|++.+++.
T Consensus 417 ~la~ai~~~l~~~~~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 417 GIAAAIKRALEMPEEEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 9999999999854 44445554444443 356677777888777765
No 238
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=65.16 E-value=69 Score=28.46 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=55.1
Q ss_pred HHHHHHHHHh--CCCeEEEEeCc--cchHHHHHhhcccccCCCCCeEE-EEcCC-CCCCCCCCCCCHHHHHhhchhhccC
Q 042709 28 LMKLATKIAE--HGIDVTFVNTE--FIHAKIIASMQGKAENSSSQIML-VSIPD-GLDLQADEREDPHKLMTEDPQADTE 101 (398)
Q Consensus 28 ~l~La~~L~~--rGh~Vt~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (398)
.++.|-+|++ .|-+|+.++-. ...+.+.+..+ -|+.- +-+.+ .+ ...+.......+.+..+.
T Consensus 42 AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLA-------mGaDraili~d~~~-----~~~d~~~ta~~Laa~~~~ 109 (260)
T COG2086 42 AVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALA-------MGADRAILITDRAF-----AGADPLATAKALAAAVKK 109 (260)
T ss_pred HHHHHHHhhccCCCceEEEEEecchhhHHHHHHHHh-------cCCCeEEEEecccc-----cCccHHHHHHHHHHHHHh
Confidence 4677888888 46678887743 34444444321 02211 11111 11 344455555566666666
Q ss_pred C-ccEEEecCcch------hHHHHHHHhCCceEEEcC
Q 042709 102 C-TACVIADISVG------WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 102 ~-pD~vi~D~~~~------~~~~~A~~lgiP~v~~~~ 131 (398)
. +|+|++--... -+..+|+.+|+|++.+..
T Consensus 110 ~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 110 IGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred cCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 6 99999754432 589999999999998654
No 239
>PLN02924 thymidylate kinase
Probab=64.99 E-value=14 Score=31.92 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=42.9
Q ss_pred CcccccccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 1 METQVQLSCRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 1 ~~~~~~~~m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|||++-+.++++-|+|--..+.|=..-.-.|++.|.++|+.|.+...+.
T Consensus 6 ~~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~ 54 (220)
T PLN02924 6 METESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPD 54 (220)
T ss_pred cCCCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCC
Confidence 7888888888888889999999999999999999999999987665443
No 240
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=64.74 E-value=77 Score=30.87 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH----HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA----KIIASMQGKAENSSSQIMLVSIPDGLDLQADER 85 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (398)
++.+++++..+ .-.+.+++.|.+-|-+|..+.+..... .+.+.. .++..+. ..
T Consensus 325 ~Gkrv~i~~g~-----~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~-------~~~~~v~-----------~~ 381 (456)
T TIGR01283 325 KGKKAAIYTGG-----VKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELM-------GEGTVML-----------DD 381 (456)
T ss_pred CCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHc-------CCCeEEE-----------eC
Confidence 57788776543 344688899999999999987653322 222110 0111110 12
Q ss_pred CCHHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 86 EDPHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
.+..++.+.+ +.. ||++|.. .....+|+++|||++.+.
T Consensus 382 ~d~~e~~~~i----~~~~pDl~ig~---~~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 382 ANPRELLKLL----LEYKADLLIAG---GKERYTALKLGIPFCDIN 420 (456)
T ss_pred CCHHHHHHHH----hhcCCCEEEEc---cchHHHHHhcCCCEEEcc
Confidence 2333343333 344 9999987 346788999999998753
No 241
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=64.73 E-value=11 Score=31.32 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=33.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKII 55 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 55 (398)
+||++.-.++ +..+-...+.+.|.++|++|.++.++.-...+.
T Consensus 1 k~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 1 KKILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred CEEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 3677776665 456677799999999999999999987665554
No 242
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=64.58 E-value=22 Score=27.92 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=39.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
+.+|++.+..+.+|-.--.-++..|.+.|++|+..+..-..+.+-+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 35899999999999999999999999999999999886555544333
No 243
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=64.44 E-value=10 Score=29.69 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=27.7
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 23 GHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 23 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
-.+.-.+-|+..|.++||+|++.+++.-...++-+
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 34455788899999999999999999888777654
No 244
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=63.97 E-value=74 Score=25.42 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=31.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 14 VLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
|++.-.++.|=...+..++..|.++|++|.++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 56777788999999999999999999999998865
No 245
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=63.94 E-value=8.4 Score=36.21 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=59.9
Q ss_pred cCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCC--CCCcCHHHHHHHHH
Q 042709 276 APQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDE--NGIITRQEIQINVK 353 (398)
Q Consensus 276 vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~--~~~~~~~~l~~ai~ 353 (398)
.+-.++|..+++ +||-- .+.+.|.+..++|++....-.|.....+ |.-......- ...-+.++|.++|.
T Consensus 261 ~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~r------g~~~~~~~~~pg~~~~~~~eL~~~i~ 331 (369)
T PF04464_consen 261 EDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKER------GFYFDYEEDLPGPIVYNFEELIEAIE 331 (369)
T ss_dssp S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTS------SBSS-TTTSSSS-EESSHHHHHHHHT
T ss_pred CCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhcc------CCCCchHhhCCCceeCCHHHHHHHHH
Confidence 355677888888 99988 4588899999999998766555442221 2222211000 01247899999999
Q ss_pred HHhcCHH-HHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 042709 354 ALLKNDG-IKGNSLKLKEIARKILVEGGSSFRKFDSF 389 (398)
Q Consensus 354 ~~l~~~~-~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 389 (398)
.+++++. ++++.++..+++-.. .+|.++.+.++.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~-~Dg~s~eri~~~I 367 (369)
T PF04464_consen 332 NIIENPDEYKEKREKFRDKFFKY-NDGNSSERIVNYI 367 (369)
T ss_dssp THHHHHHHTHHHHHHHHHHHSTT---S-HHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHHHHhCCC-CCchHHHHHHHHH
Confidence 9998763 566667777777542 3345545555443
No 246
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=63.17 E-value=33 Score=32.91 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=53.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH-HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA-KIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKL 91 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (398)
|++++..+.. .+.+++.|.+-|-+|+.+.++.... .-..... .+. .. +.... ...++...
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~~~~~--------~l~--~~--~~~v~--~~~~~~~~ 342 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSAPDYE--------WLS--AL--GVEVR--YRKSLEDD 342 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhHHHHH--------HHH--hc--CCccc--cCCCHHHH
Confidence 6666554443 6669999999999999998873211 1111100 000 00 00000 12223222
Q ss_pred HhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcC
Q 042709 92 MTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVP 131 (398)
Q Consensus 92 ~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 131 (398)
. ..++.. ||++|... .+..+|+++|||.+.+..
T Consensus 343 ~----~~~~~~~pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 343 I----AAVEEYRPDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred H----HHHhhcCCCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 2 112344 99999883 478899999999988553
No 247
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=63.03 E-value=33 Score=30.48 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
+.-+++.-.|+.|=..-.+.++...+++|..|.|++.+...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 45567778889999999999999988999999999998544
No 248
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=62.88 E-value=83 Score=25.99 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCccchHH-H-HHhhcccccCCCCCe-EEEEcCC-CCCCCCCCCCCHHHHHhhchhhccCC
Q 042709 27 PLMKLATKIAEHGIDVTFVNTEFIHAK-I-IASMQGKAENSSSQI-MLVSIPD-GLDLQADEREDPHKLMTEDPQADTEC 102 (398)
Q Consensus 27 p~l~La~~L~~rGh~Vt~~~~~~~~~~-v-~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (398)
-.+..|+.|.+.|-+|+.++....... . ..... . |+ +.+.+.+ .+ ...+...+...+.+.++..
T Consensus 23 e~l~~A~~l~~~~~~v~~v~~G~~~~~~~~~~~~~----~---Gad~v~~~~~~~~-----~~~~~~~~a~~l~~~i~~~ 90 (181)
T cd01985 23 EAVEAALRLKEYGGEVTALVIGPPAAEVALREALA----M---GADKVLLVEDPAL-----AGYDPEATAKALAALIKKE 90 (181)
T ss_pred HHHHHHHHHhhcCCeEEEEEECChHHHHHHHHHHH----h---CCCEEEEEecCcc-----cCCChHHHHHHHHHHHHHh
Confidence 567789999765556666665433221 1 11110 1 22 2222221 11 2223444555555555555
Q ss_pred -ccEEEecCcch---hHHHHHHHhCCceEE
Q 042709 103 -TACVIADISVG---WALEVAEAIGIARAA 128 (398)
Q Consensus 103 -pD~vi~D~~~~---~~~~~A~~lgiP~v~ 128 (398)
||+|++-.... .+..+|.++|.|++.
T Consensus 91 ~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 91 KPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred CCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 99999988765 689999999999987
No 249
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=62.71 E-value=32 Score=25.49 Aligned_cols=86 Identities=20% Similarity=0.064 Sum_probs=47.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKL 91 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (398)
||||++-.+++-| +||..|.+.-.--.+++.+.+.... +. -+..++ ...++..+
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPGN~G~~-~~-----------~~~~~~---------~~~d~~~l 54 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPGNPGTA-EL-----------GKNVPI---------DITDPEEL 54 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE--TTGG-GT-----------SEEE-S----------TT-HHHH
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCCCHHHH-hh-----------ceecCC---------CCCCHHHH
Confidence 6899999999888 5788998754322222222222111 11 111222 22233333
Q ss_pred HhhchhhccCC-ccEEEecCcch---hHHHHHHHhCCceE
Q 042709 92 MTEDPQADTEC-TACVIADISVG---WALEVAEAIGIARA 127 (398)
Q Consensus 92 ~~~~~~~~~~~-pD~vi~D~~~~---~~~~~A~~lgiP~v 127 (398)
.+.. ++. +|++|..+-.+ +-.+..+..|||++
T Consensus 55 ~~~a----~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 55 ADFA----KENKIDLVVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHHH----HHTTESEEEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred HHHH----HHcCCCEEEECChHHHHHHHHHHHHHCCCcEE
Confidence 3222 344 99999998776 55677777899985
No 250
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=62.49 E-value=85 Score=32.45 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=61.1
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCccch----HHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCC
Q 042709 13 HVLVIPF-PALGHVAPLMKLATKIAEHGIDVTFVNTEFIH----AKIIASMQGKAENSSSQIMLVSIPDGLDLQADERED 87 (398)
Q Consensus 13 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (398)
.|.+.+. +..|=..-.+.|++.|.++|.+|-++=|-... +.+.+ .+.... ....
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~--------------------~~~~~~-~~~~ 62 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEA--------------------LLASGQ-LDEL 62 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHH--------------------HHhccC-ChHH
Confidence 4555544 45789999999999999999999998752211 11100 000000 1111
Q ss_pred HHHHHhhchhhccCCccEEEecCcch---------hHHHHHHHhCCceEEEcCCcH
Q 042709 88 PHKLMTEDPQADTECTACVIADISVG---------WALEVAEAIGIARAAFVPFGP 134 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~pD~vi~D~~~~---------~~~~~A~~lgiP~v~~~~~~~ 134 (398)
.......+.+ ++...|+||+|.... ....+|+.++.|++.+.....
T Consensus 63 ~~~I~~~~~~-l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~ 117 (684)
T PRK05632 63 LEEIVARYHA-LAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGN 117 (684)
T ss_pred HHHHHHHHHH-hccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCC
Confidence 2223333322 132399999887643 246789999999999987654
No 251
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=62.03 E-value=25 Score=28.59 Aligned_cols=99 Identities=19% Similarity=0.124 Sum_probs=56.1
Q ss_pred ccCHHH----HHHHHHHHHhC-CCeEEEEeCcc---chHHHHHhhcccccCCCCCe-EEEEcCCCCCCCCCCCCCHHHHH
Q 042709 22 LGHVAP----LMKLATKIAEH-GIDVTFVNTEF---IHAKIIASMQGKAENSSSQI-MLVSIPDGLDLQADEREDPHKLM 92 (398)
Q Consensus 22 ~GH~~p----~l~La~~L~~r-Gh~Vt~~~~~~---~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 92 (398)
.|.++| .+..|++|++. |.+|+.++-.. ..+.+++.... .|+ +.+.+++... ...+...+.
T Consensus 10 ~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~------~G~d~v~~~~~~~~----~~~~~~~~a 79 (164)
T PF01012_consen 10 DGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK------YGADKVYHIDDPAL----AEYDPEAYA 79 (164)
T ss_dssp TCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS------TTESEEEEEE-GGG----TTC-HHHHH
T ss_pred CCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh------cCCcEEEEecCccc----cccCHHHHH
Confidence 444444 68889999985 77777766542 33332222110 133 3444432111 122344555
Q ss_pred hhchhhccCC-ccEEEecCcch---hHHHHHHHhCCceEEEc
Q 042709 93 TEDPQADTEC-TACVIADISVG---WALEVAEAIGIARAAFV 130 (398)
Q Consensus 93 ~~~~~~~~~~-pD~vi~D~~~~---~~~~~A~~lgiP~v~~~ 130 (398)
..+.+.+++. ||+|+.-.... .+..+|.++|.|++.=.
T Consensus 80 ~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 80 DALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp HHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 5665555555 99999987765 57899999999999744
No 252
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=61.95 E-value=13 Score=30.88 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=37.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIA 56 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 56 (398)
+..++++..++.|=..=..++++++.++|+.|.|++.+...+.+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 5678888888999999999999999999999999999887777653
No 253
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.59 E-value=30 Score=32.44 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=57.8
Q ss_pred cccCCC-CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCC
Q 042709 6 QLSCRQ-PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADE 84 (398)
Q Consensus 6 ~~~m~~-~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (398)
++.=.+ .-|+|+-.-+.|-..-+-.||..+.++|+.+.+++.+.|..-.-.+.... ....++.|+.- + .
T Consensus 95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqn--A~k~~iP~ygs---y-----t 164 (483)
T KOG0780|consen 95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQN--ATKARVPFYGS---Y-----T 164 (483)
T ss_pred ccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHH--hHhhCCeeEec---c-----c
Confidence 343333 44557777799999999999999999999999999988765332221000 11125666542 1 1
Q ss_pred CCCHHHHHhhchhhccCC-ccEEEecCc
Q 042709 85 REDPHKLMTEDPQADTEC-TACVIADIS 111 (398)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-pD~vi~D~~ 111 (398)
..++......-.+.+++. +|+||+|..
T Consensus 165 e~dpv~ia~egv~~fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 165 EADPVKIASEGVDRFKKENFDVIIVDTS 192 (483)
T ss_pred ccchHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 222222222222222556 999999965
No 254
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=61.48 E-value=36 Score=32.43 Aligned_cols=106 Identities=10% Similarity=-0.054 Sum_probs=58.2
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEE-eCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCC--CCCCHHHHHh
Q 042709 17 IPFPALGHVAPLMKLATKIAEHGIDVTFV-NTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQAD--EREDPHKLMT 93 (398)
Q Consensus 17 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 93 (398)
-+..+.|-..-.+.|.++|++||++|.=+ +.|++.+- .|++.-.+.+..+. ..........
T Consensus 7 g~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP----------------~~H~~atG~~srNLD~~mm~~~~v~~ 70 (451)
T COG1797 7 GTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDP----------------GYHTAATGRPSRNLDSWMMGEEGVRA 70 (451)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCc----------------hhhhHhhCCccCCCchhhcCHHHHHH
Confidence 34457899999999999999999998644 23343321 11111112211110 0001111111
Q ss_pred hchhhc--------cC--C-ccEEEecCcchhHHHHHHHhCCceEEEcCCcHHHHH
Q 042709 94 EDPQAD--------TE--C-TACVIADISVGWALEVAEAIGIARAAFVPFGPGSLA 138 (398)
Q Consensus 94 ~~~~~~--------~~--~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 138 (398)
.+.+.. ++ - +|-+..+.-......+|+.+|+|+|.+.-+...+.+
T Consensus 71 ~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S 126 (451)
T COG1797 71 LFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRS 126 (451)
T ss_pred HHHHhcCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHH
Confidence 111111 22 2 555444443446899999999999998877655443
No 255
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=61.26 E-value=50 Score=30.58 Aligned_cols=106 Identities=15% Similarity=0.037 Sum_probs=72.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHG--IDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
|||+++-....|++.-...+.+.|+++. .++++++++.+.+..... +.+.-+..-+. .. ......
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~---------p~I~~vi~~~~--~~--~~~~~~ 68 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN---------PEIDKVIIIDK--KK--KGLGLK 68 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC---------hHhhhhccccc--cc--cccchH
Confidence 8999999999999999999999999986 999999999988877554 23332221111 01 111122
Q ss_pred HHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcC
Q 042709 90 KLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVP 131 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 131 (398)
+ ...+...+++. +|+||.=.-.+-...++...++|.-.-.-
T Consensus 69 ~-~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~g~~ 110 (334)
T COG0859 69 E-RLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRIGFD 110 (334)
T ss_pred H-HHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCcccccc
Confidence 2 22233333565 99999877777777778788888765433
No 256
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=61.14 E-value=19 Score=32.74 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=29.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIA 56 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 56 (398)
|||+++-.++.| ..+|..|++.||+|+++..+...+.+.+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHh
Confidence 578888877766 4578889999999999987444444443
No 257
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=60.88 E-value=7.5 Score=32.86 Aligned_cols=46 Identities=13% Similarity=0.051 Sum_probs=31.9
Q ss_pred cceecccCcc----cccCCCCcceEEecCC----cchHHHHHhcCCceecccCccc
Q 042709 270 GKIVEWAPQE----NDLGHPSIAWFLSHCG----WNSTMEGLSMGVPFLCWPSFAD 317 (398)
Q Consensus 270 ~~v~~~vpq~----~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~v~~P~~~D 317 (398)
+.+.++++.. .+++.+++ +|+-.. .+++.||+.+|+|+|+-+..+.
T Consensus 163 v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 163 VIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred EEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 4555665322 23334666 887776 7899999999999999766443
No 258
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=60.63 E-value=1e+02 Score=26.69 Aligned_cols=101 Identities=11% Similarity=-0.003 Sum_probs=59.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccc----cC-CCCCeEEEEcCCCCCCCCCCC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKA----EN-SSSQIMLVSIPDGLDLQADER 85 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~ 85 (398)
+.-+++.-.++.|-..-...++...+++|..|.|++.+.....+.+...... +. ....+.+..+.... .....
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~--~~~~~ 102 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEG--FEWNS 102 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccc--cccCc
Confidence 4556777888999999999998888889999999999876655444321110 00 00012222221100 00012
Q ss_pred CCHHHHHhhchhhccCC-ccEEEecCcch
Q 042709 86 EDPHKLMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
.+....+..+.+.++.. ++++|.|....
T Consensus 103 ~~~~~ll~~l~~~i~~~~~~~iviDs~t~ 131 (234)
T PRK06067 103 TLANKLLELIIEFIKSKREDVIIIDSLTI 131 (234)
T ss_pred chHHHHHHHHHHHHHhcCCCEEEEecHHH
Confidence 23344555555555556 99999998863
No 259
>PLN02939 transferase, transferring glycosyl groups
Probab=60.54 E-value=15 Score=38.74 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=47.7
Q ss_pred eecccCcc---cccCCCCcceEEec----CCcchHHHHHhcCCceecccCcc--chhhH--HHhh-ccceeeEEEecCCC
Q 042709 272 IVEWAPQE---NDLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFA--DQHHN--RNYI-CDVWKIGVQLLPDE 339 (398)
Q Consensus 272 v~~~vpq~---~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~--DQ~~n--a~~~-~~~~g~g~~l~~~~ 339 (398)
+..+++.. .+++.+++ ||.- +-..+.+||+.+|+|.|+....+ |.-.+ ...+ .+ -+-|...+.
T Consensus 841 FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~e-g~NGfLf~~-- 915 (977)
T PLN02939 841 LILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVE-LRNGFTFLT-- 915 (977)
T ss_pred EEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccC-CCceEEecC--
Confidence 34555543 46777777 8753 22347899999999998865533 21111 1111 12 145666643
Q ss_pred CCCcCHHHHHHHHHHHhc
Q 042709 340 NGIITRQEIQINVKALLK 357 (398)
Q Consensus 340 ~~~~~~~~l~~ai~~~l~ 357 (398)
.+++.+.++|.++++
T Consensus 916 ---~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 916 ---PDEQGLNSALERAFN 930 (977)
T ss_pred ---CCHHHHHHHHHHHHH
Confidence 488889999988775
No 260
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=60.53 E-value=14 Score=33.43 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=29.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC-ccchHHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNT-EFIHAKIIA 56 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~-~~~~~~v~~ 56 (398)
|||+++-.++.| ..+|..|.+.||+|+++.. +...+.+.+
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHHH
Confidence 578888887766 5678889999999999987 333344443
No 261
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=60.43 E-value=14 Score=30.87 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=32.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIA 56 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 56 (398)
||++.-.++.|-+. ...|.+.|.++|++|.++.++.-...+..
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 35555555555444 58999999999999999999988877653
No 262
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=60.34 E-value=54 Score=30.48 Aligned_cols=38 Identities=32% Similarity=0.474 Sum_probs=31.1
Q ss_pred cccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCc
Q 042709 6 QLSCRQPHVLVIPFPALGHVAPLMKLATKIAEHGI-DVTFVNTE 48 (398)
Q Consensus 6 ~~~m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~ 48 (398)
|..++++||+++-.++.| -.+|+.|++.|+ +++++-..
T Consensus 19 Q~~L~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 19 QRKIREKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred HHhhcCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 667778999999999877 678999999998 67766554
No 263
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=60.29 E-value=18 Score=32.89 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=32.9
Q ss_pred CCCCEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 9 CRQPHVL-VIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 9 m~~~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|.+||++ |+.=++-|=..-...||..|+++|++|.++-...
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4556655 5555788999999999999999999999995433
No 264
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=60.27 E-value=60 Score=31.55 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=59.8
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCcc-chH--HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCC
Q 042709 12 PHVLVIPF-PALGHVAPLMKLATKIAEHGIDVTFVNTEF-IHA--KIIASMQGKAENSSSQIMLVSIPDGLDLQADERED 87 (398)
Q Consensus 12 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (398)
.+|++... ...|=..-...|++.|+++|++|..+-+.. ..+ ..... . +.....+. . ..-+
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~------~---g~~~~~ld-~------~~~~ 67 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAA------T---GRPSRNLD-S------WMMG 67 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHH------h---CCCcccCC-c------eeCC
Confidence 45665544 456889999999999999999999886631 111 01110 0 11111110 0 0111
Q ss_pred HHHHHhhchhhccCCccEEEecCc------------chhHHHHHHHhCCceEEEcCCcH
Q 042709 88 PHKLMTEDPQADTECTACVIADIS------------VGWALEVAEAIGIARAAFVPFGP 134 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~pD~vi~D~~------------~~~~~~~A~~lgiP~v~~~~~~~ 134 (398)
.....+.+... +...|++|++.. ......+|+.++.|++.+.....
T Consensus 68 ~~~v~~~~~~~-~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~ 125 (451)
T PRK01077 68 EELVRALFARA-AQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASG 125 (451)
T ss_pred HHHHHHHHHHh-cccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCch
Confidence 22222222221 222888887443 12367999999999999987543
No 265
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=60.09 E-value=16 Score=33.62 Aligned_cols=105 Identities=14% Similarity=0.045 Sum_probs=70.9
Q ss_pred CCCcEEEEEeCCcccCCHH---HHHHhhc-------c-ceecccC---cccccCCCCcceEEec--CCcchHHHHHhcCC
Q 042709 244 AIGSVTYVAFGRFSILGQE---QLEQLAL-------G-KIVEWAP---QENDLGHPSIAWFLSH--CGWNSTMEGLSMGV 307 (398)
Q Consensus 244 ~~~~vVyvs~Gs~~~~~~~---~~~~~~~-------~-~v~~~vp---q~~lL~~~~~~~~ItH--gG~~s~~eal~~Gv 307 (398)
++.--|+|=||--.. +.+ ++.+.+. + .+.+++| +..+|+.|+++.|.+. =|.|++.-.|..|+
T Consensus 212 ~~~~kIivPLsYg~~-n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~ 290 (360)
T PF07429_consen 212 GDDVKIIVPLSYGAN-NQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGK 290 (360)
T ss_pred CCCeEEEEECCCCCc-hHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCC
Confidence 334567777775432 222 2322222 1 2346666 5669999999888774 69999999999999
Q ss_pred ceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhc
Q 042709 308 PFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLK 357 (398)
Q Consensus 308 P~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~ 357 (398)
|+++- .+-+.+ .-+.+ .|+-+--.. +.++.+.|+++=+++..
T Consensus 291 ~v~L~---~~np~~-~~l~~-~~ipVlf~~---d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 291 KVFLS---RDNPFW-QDLKE-QGIPVLFYG---DELDEALVREAQRQLAN 332 (360)
T ss_pred eEEEe---cCChHH-HHHHh-CCCeEEecc---ccCCHHHHHHHHHHHhh
Confidence 99884 333333 44445 387776653 67999999999888775
No 266
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=60.08 E-value=12 Score=32.63 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=26.1
Q ss_pred CEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCc
Q 042709 12 PHVLVIPFPALGHVAP------------LMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~ 48 (398)
||||+...|+.=.+.| =.+||+.|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 4666666665544433 257889999999999998753
No 267
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=59.72 E-value=32 Score=32.58 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=37.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKI 54 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 54 (398)
+.=||+---|+.|--.=.+.++..|+++| +|.|++.+.....+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 45577777799999999999999999999 99999999887765
No 268
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=59.63 E-value=68 Score=30.27 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=55.3
Q ss_pred CCEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 11 QPHVLVIP-FPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 11 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
.++|+++- .|..|. .+|+.|.++||+|+++...... ...+. ....++-+..+|+.. ..
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~~~~-~~~~~------~~~aDlVilavP~~~---------~~ 156 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQDDWD-RAEDI------LADAGMVIVSVPIHL---------TE 156 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCCcch-hHHHH------HhcCCEEEEeCcHHH---------HH
Confidence 37899987 777775 5899999999999999864332 11111 111357777765332 12
Q ss_pred HHHhhchhhccCC-ccEEEecCcch---hHHHHHHHhCCceEEEc
Q 042709 90 KLMTEDPQADTEC-TACVIADISVG---WALEVAEAIGIARAAFV 130 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~---~~~~~A~~lgiP~v~~~ 130 (398)
..+..+. . . ++.+|+|.... ....+++.+..+++...
T Consensus 157 ~~~~~l~---~-l~~~~iv~Dv~SvK~~~~~~~~~~~~~~fvg~H 197 (374)
T PRK11199 157 EVIARLP---P-LPEDCILVDLTSVKNAPLQAMLAAHSGPVLGLH 197 (374)
T ss_pred HHHHHHh---C-CCCCcEEEECCCccHHHHHHHHHhCCCCEEeeC
Confidence 2222221 3 5 89999998764 22333333444544433
No 269
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=59.46 E-value=1.1e+02 Score=25.89 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=59.4
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhc
Q 042709 16 VIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTED 95 (398)
Q Consensus 16 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (398)
++.....|-..-++.-++....+|-+|.++.+.-..-. +...+.-.-|.......-.....+...+
T Consensus 9 i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~--------------~~~~V~Sr~G~~~~A~~i~~~~~i~~~i 74 (201)
T COG1435 9 IYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRY--------------GVGKVSSRIGLSSEAVVIPSDTDIFDEI 74 (201)
T ss_pred EEccCcCcchHHHHHHHHHHHHcCCeEEEEeccccccc--------------ccceeeeccCCcccceecCChHHHHHHH
Confidence 44445679999999999999999999999998533211 1222221112211111111222333333
Q ss_pred hhhccCC-ccEEEecCcchh-------HHHHHHHhCCceEE
Q 042709 96 PQADTEC-TACVIADISVGW-------ALEVAEAIGIARAA 128 (398)
Q Consensus 96 ~~~~~~~-pD~vi~D~~~~~-------~~~~A~~lgiP~v~ 128 (398)
...-... .|+|+.|...++ ...+|..+|||++.
T Consensus 75 ~~~~~~~~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~ 115 (201)
T COG1435 75 AALHEKPPVDCVLIDEAQFFDEELVYVLNELADRLGIPVIC 115 (201)
T ss_pred HhcccCCCcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEE
Confidence 3332334 689999988764 35778888999987
No 270
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=59.03 E-value=44 Score=33.06 Aligned_cols=96 Identities=9% Similarity=-0.046 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc----hHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI----HAKIIASMQGKAENSSSQIMLVSIPDGLDLQADER 85 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (398)
.++|++++. .-.-.+++++-|.+-|-+++.+.+... .+.+++..... ..+....-+ ..
T Consensus 362 ~GKrvaI~g-----dpd~~~~l~~fL~ElGmepv~v~~~~~~~~~~~~l~~ll~~~----~~~~~~~v~---------~~ 423 (515)
T TIGR01286 362 HGKRFAIYG-----DPDFVMGLVRFVLELGCEPVHILCTNGTKRWKAEMKALLAAS----PYGQNATVW---------IG 423 (515)
T ss_pred cCceEEEEC-----CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhcC----CCCCccEEE---------eC
Confidence 467887775 334567788888899999776655432 22232221000 000000000 22
Q ss_pred CCHHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 86 EDPHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
.|+.++...+ ... ||++|.+.. +..+|+++|||.+.+.
T Consensus 424 ~Dl~~l~~~l----~~~~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 424 KDLWHLRSLV----FTEPVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred CCHHHHHHHH----hhcCCCEEEECch---HHHHHHHcCCCEEEec
Confidence 3444444333 344 999999865 7899999999998754
No 271
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=58.98 E-value=20 Score=29.05 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
++..+|+++-.+..| ...++.|.+.|++|++++++.
T Consensus 11 l~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 11 LHNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred cCCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCcc
Confidence 468899998776533 778999999999999996543
No 272
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=58.64 E-value=33 Score=33.09 Aligned_cols=89 Identities=11% Similarity=-0.033 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHK 90 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
.||||++-.+++-| +|++.|.+.++...+++.+.+..... . ..... ... ...|...
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~g~~~-~-----------~~~~~--~~~-----~~~d~~~ 59 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNGGFPD-D-----------ELLPA--DSF-----SILDKSS 59 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCchHHhc-c-----------ccccc--cCc-----CcCCHHH
Confidence 38999999998777 68999999996655555554432211 0 00000 011 2334444
Q ss_pred HHhhchhhccCC-ccEEEecCcchh---HHHHHHHhCCceE
Q 042709 91 LMTEDPQADTEC-TACVIADISVGW---ALEVAEAIGIARA 127 (398)
Q Consensus 91 ~~~~~~~~~~~~-pD~vi~D~~~~~---~~~~A~~lgiP~v 127 (398)
+.+. .++. +|+|+.++-... ...+++.+|+|++
T Consensus 60 l~~~----a~~~~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 60 VQSF----LKSNPFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred HHHH----HHHcCCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 4332 2345 999999766543 3456677999974
No 273
>PRK08760 replicative DNA helicase; Provisional
Probab=57.63 E-value=20 Score=35.02 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=34.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCccchHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAE-HGIDVTFVNTEFIHAKI 54 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v 54 (398)
-=+++..-|+.|=..-.+.+|...+. .|+.|.|++.+.....+
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 33567777899999999999998875 59999999998766544
No 274
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=57.58 E-value=43 Score=27.83 Aligned_cols=105 Identities=9% Similarity=-0.079 Sum_probs=52.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCe--EEEEeCc-cchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGID--VTFVNTE-FIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~--Vt~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
|||+|+..+.. ..+..+.++|.+++|+ +..+.+. ....-...... .++....+.... -..-
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~~ 64 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK-------NGIPAQVADEKN------FQPR 64 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH-------TTHHEEEHHGGG------SSSH
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc-------CCCCEEeccccC------CCch
Confidence 68998866553 5566778899999997 4444443 32221111110 123322221100 0001
Q ss_pred HHHHhhchhhccCC-ccEEEecCcch-hHHHHHHHhCCceEEEcCC
Q 042709 89 HKLMTEDPQADTEC-TACVIADISVG-WALEVAEAIGIARAAFVPF 132 (398)
Q Consensus 89 ~~~~~~~~~~~~~~-pD~vi~D~~~~-~~~~~A~~lgiP~v~~~~~ 132 (398)
...-..+.+.+++. ||++|+-.+.. ....+-+.....++-+.++
T Consensus 65 ~~~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 65 SENDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp HHHHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred HhhhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 12223333444556 99998876643 4555556666666666654
No 275
>PRK05595 replicative DNA helicase; Provisional
Probab=57.48 E-value=50 Score=32.03 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=34.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccchHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEFIHAKI 54 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 54 (398)
-=+++..-|+.|=..-.+.+|..++ +.|+.|.|++.+-....+
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 3355677789999999999998876 579999999998666544
No 276
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=57.04 E-value=74 Score=30.67 Aligned_cols=92 Identities=11% Similarity=0.014 Sum_probs=54.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccchH--HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEFIHA--KIIASMQGKAENSSSQIMLVSIPDGLDLQADERED 87 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (398)
+.|++++.. -.-.+++++.|. +-|-+|..+++..... ..+.... . +.+... ..++
T Consensus 301 gkrv~i~g~-----~~~~~~l~~~L~~elG~~vv~~~~~~~~~~~~~~~~~~--------~-----~~~~~~----i~~D 358 (430)
T cd01981 301 GKRAFVFGD-----ATHVAAATRILAREMGFRVVGAGTYCKEDAKWFREQAT--------G-----YCDEAL----ITDD 358 (430)
T ss_pred CCeEEEEcC-----hHHHHHHHHHHHHHcCCEEEeccCCCccHHHHHHHHHH--------h-----cCCceE----EecC
Confidence 567766543 336788999997 8999999877643222 2222110 0 111100 1123
Q ss_pred HHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcC
Q 042709 88 PHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVP 131 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 131 (398)
..++.+. +++. ||++|.+.. ...+|+++|+|++.++.
T Consensus 359 ~~e~~~~----i~~~~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 359 HTEVGDM----IARTEPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHH----HHhhCCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 3333322 2455 999999974 66679999999988654
No 277
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=56.46 E-value=1.1e+02 Score=29.88 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH----HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA----KIIASMQGKAENSSSQIMLVSIPDGLDLQADER 85 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (398)
.+.+++++..+ .-.+++++.|.+.|-+|..+.+..... .+.... .++..+. ..
T Consensus 323 ~Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~-------~~~~~v~-----------~d 379 (475)
T PRK14478 323 EGKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELM-------GPDAHMI-----------DD 379 (475)
T ss_pred CCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHc-------CCCcEEE-----------eC
Confidence 46788776544 345588888999999998887654322 222210 0111110 11
Q ss_pred CCHHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEE
Q 042709 86 EDPHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAF 129 (398)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~ 129 (398)
.+..++.+.+ +.. ||++|.. .....+|+++|||++..
T Consensus 380 ~~~~e~~~~i----~~~~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 380 ANPRELYKML----KEAKADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred CCHHHHHHHH----hhcCCCEEEec---CchhhhhhhcCCCEEEc
Confidence 1223333222 345 9999997 45789999999999853
No 278
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.33 E-value=19 Score=32.05 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=37.3
Q ss_pred CCcceEEecCCcchHHHHHh------cCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcC
Q 042709 285 PSIAWFLSHCGWNSTMEGLS------MGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKN 358 (398)
Q Consensus 285 ~~~~~~ItHgG~~s~~eal~------~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~ 358 (398)
+++ +|+-||=||++.+++ .++|++.+-. - .+|.- ..++++++.+++.+++++
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~--------G------~lGFL------~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT--------G------HLGFY------TDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC--------C------Cceec------ccCCHHHHHHHHHHHHcC
Confidence 455 999999999999987 4788877621 1 12222 234678888888888875
Q ss_pred H
Q 042709 359 D 359 (398)
Q Consensus 359 ~ 359 (398)
+
T Consensus 94 ~ 94 (265)
T PRK04885 94 P 94 (265)
T ss_pred C
Confidence 3
No 279
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=55.75 E-value=1.1e+02 Score=28.14 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=23.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
|||+|+..+..+ +...++|.++||+|..+.+
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt 31 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVT 31 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEc
Confidence 588988666533 6667888999999986665
No 280
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=55.43 E-value=18 Score=33.60 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=30.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIA 56 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 56 (398)
|||.|+..+..| ..+|..|+++||+|+++......+.+.+
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~~~~~~~~ 42 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRARIGDELRA 42 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHHHHHHHHh
Confidence 789999888776 4578899999999999986543333333
No 281
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=55.14 E-value=1.1e+02 Score=28.16 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
+..|+++..++.|=..-...||..|+.+|++|.+++.+.+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 44566787789999999999999999999999999987654
No 282
>PRK07206 hypothetical protein; Provisional
Probab=54.81 E-value=38 Score=32.37 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=24.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
++++++-.... ...+++++.++|++++.+....
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 46777665433 3468999999999999888754
No 283
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=54.77 E-value=27 Score=28.47 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=21.8
Q ss_pred cceEEecCCcc------hHHHHHhcCCceecccC
Q 042709 287 IAWFLSHCGWN------STMEGLSMGVPFLCWPS 314 (398)
Q Consensus 287 ~~~~ItHgG~~------s~~eal~~GvP~v~~P~ 314 (398)
.+++++|+|-| .+.+|...++|||++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33488887755 67789999999999963
No 284
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=54.72 E-value=22 Score=31.08 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=29.7
Q ss_pred ccccCCCCEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 5 VQLSCRQPHVLVI-PFPALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 5 ~~~~m~~~~il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
+++.|..++||++ ++|- ==..-+-+....|+++||+|++++-.
T Consensus 4 ~~~~~~~~~vL~v~aHPD-De~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 4 LPPMLDPLRVLVVFAHPD-DEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred ccccccCCcEEEEecCCc-chhhccHHHHHHHHHCCCeEEEEEcc
Confidence 4566678888844 4442 22344566777889999999999843
No 285
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=54.40 E-value=23 Score=30.95 Aligned_cols=45 Identities=4% Similarity=-0.125 Sum_probs=33.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchHHHHHh
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEH--GIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~ 57 (398)
||++.-.++.+=++=.+.|.+.|.++ ||+|.++.++.-...+...
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 35555555534447899999999999 9999999998877666543
No 286
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=54.09 E-value=36 Score=25.90 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=33.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHH
Q 042709 14 VLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAK 53 (398)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 53 (398)
++....++..|.....-++..|.++|++|.+.......+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~ 41 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEE 41 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHH
Confidence 5677778889999999999999999999999876544333
No 287
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=54.07 E-value=26 Score=29.85 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=26.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
|+++++-.+-.| -+||++|++.||+|++.+.....
T Consensus 2 ~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 2 MIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred cEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCChh
Confidence 666666555443 57899999999999999776544
No 288
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=54.04 E-value=22 Score=21.85 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHhcC-HHHHHHHHHH
Q 042709 344 TRQEIQINVKALLKN-DGIKGNSLKL 368 (398)
Q Consensus 344 ~~~~l~~ai~~~l~~-~~~~~~a~~l 368 (398)
|+++|.+||..+.++ -++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 578999999999987 4677777663
No 289
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=54.04 E-value=44 Score=30.28 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCccCHH--------HHHHHHHHHHhCCCeEEEEeCccchHHHHHhh
Q 042709 11 QPHVLVIPFPALGHVA--------PLMKLATKIAEHGIDVTFVNTEFIHAKIIASM 58 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~--------p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~ 58 (398)
+.+|++++.....|.. -.+.||+.|.+.|-+|++++.+.....+++..
T Consensus 40 ~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~ 95 (291)
T PF14336_consen 40 AKSVLIVTGFPVPPAPPPETDGPPGAAALARALQALGKEVVIVTDERCAPVVKAAV 95 (291)
T ss_pred CCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHH
Confidence 4667766553322322 37899999999999999999999888877763
No 290
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=53.84 E-value=64 Score=27.74 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCccchHHHHHhhcccc----c-CCCCCeEEEEcCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEH-GIDVTFVNTEFIHAKIIASMQGKA----E-NSSSQIMLVSIPDGLDLQAD 83 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~ 83 (398)
++.-+++.-.|+.|=..=.+.++..-+++ |..|.|++.+.....+.+...+.. . .....+.+..........
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~-- 95 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW-- 95 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST---
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc--
Confidence 35667888889999999999988877777 999999999887776655532110 0 000124444443221111
Q ss_pred CCCCHHHHHhhchhhccCC-ccEEEecCcch
Q 042709 84 EREDPHKLMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
...+...+...+.+.+++. ++.||.|.+..
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 1456667777776666665 89999998754
No 291
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=53.63 E-value=1.2e+02 Score=28.92 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH-HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA-KIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
.+.+++++..+. + .+.+++.|.+.|-+|..+....... ..++... . . ..+... + ...+.
T Consensus 286 ~gkrv~i~~~~~--~---~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~-~--~-~~~~~v--~---------~~~~~ 345 (410)
T cd01968 286 EGKKAALYTGGV--K---SWSLVSALQDLGMEVVATGTQKGTKEDYERIKE-L--L-GEGTVI--V---------DDANP 345 (410)
T ss_pred CCCEEEEEcCCc--h---HHHHHHHHHHCCCEEEEEecccCCHHHHHHHHH-H--h-CCCcEE--E---------eCCCH
Confidence 467887755433 2 3778899999999999887654322 1111100 0 0 000000 0 12222
Q ss_pred HHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEE
Q 042709 89 HKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAF 129 (398)
Q Consensus 89 ~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~ 129 (398)
.+..+.+ +.. ||++|.... ...+|+++|||++..
T Consensus 346 ~e~~~~i----~~~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLL----KEKKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHH----hhcCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 3333222 344 999999944 678999999999854
No 292
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=53.60 E-value=26 Score=29.00 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=31.7
Q ss_pred EEEEEcCCCccCHHH-HHHHHHHHHh-CCCeEEEEeCccchHHHH
Q 042709 13 HVLVIPFPALGHVAP-LMKLATKIAE-HGIDVTFVNTEFIHAKII 55 (398)
Q Consensus 13 ~il~~~~~~~GH~~p-~l~La~~L~~-rGh~Vt~~~~~~~~~~v~ 55 (398)
||+..-.++ ||... .+.+.+.|.+ +||+|.++.++.-...++
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 355444544 78866 8899999984 699999999988776554
No 293
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=53.59 E-value=89 Score=27.36 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=23.8
Q ss_pred ccEEE-ecCcch-hHHHHHHHhCCceEEEcCCc
Q 042709 103 TACVI-ADISVG-WALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 103 pD~vi-~D~~~~-~~~~~A~~lgiP~v~~~~~~ 133 (398)
||+++ .|+..- -|..=|+++|||+|.+.-+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 99875 565554 78888999999999976444
No 294
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=53.23 E-value=48 Score=27.75 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=46.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCc-cchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEH--GIDVTFVNTE-FIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
.|.|- ..+.|-+.-...|+++|.++ |++|.+-++. ...+.+.+..... ..+.+.+++ ..
T Consensus 23 ~iWiH-a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~-----v~~~~~P~D------------~~ 84 (186)
T PF04413_consen 23 LIWIH-AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDR-----VDVQYLPLD------------FP 84 (186)
T ss_dssp -EEEE--SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG------SEEE---S------------SH
T ss_pred cEEEE-ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCC-----eEEEEeCcc------------CH
Confidence 34444 34679999999999999998 8988887764 3333343331110 123332221 11
Q ss_pred HHHhhchhhccCC-ccEEEecCcchhH--HHHHHHhCCceEEEcC
Q 042709 90 KLMTEDPQADTEC-TACVIADISVGWA--LEVAEAIGIARAAFVP 131 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~~~--~~~A~~lgiP~v~~~~ 131 (398)
..++.+. +.. ||++|.-..-.|. ...|++.|||.+.+..
T Consensus 85 ~~~~rfl---~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 85 WAVRRFL---DHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp HHHHHHH---HHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred HHHHHHH---HHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 2222222 222 8888776666655 4456677999998654
No 295
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=53.23 E-value=36 Score=27.57 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=36.1
Q ss_pred CCCCEEEEEcCCCccCHHH-HHHHHHHHHhC--CCeEEEEeCccchHHH
Q 042709 9 CRQPHVLVIPFPALGHVAP-LMKLATKIAEH--GIDVTFVNTEFIHAKI 54 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p-~l~La~~L~~r--Gh~Vt~~~~~~~~~~v 54 (398)
+.++||+-.-.++ ||..| ..++-++|.++ +|+|+.+.+...++.+
T Consensus 6 ~~~~rIaWgITGa-G~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVv 53 (187)
T COG1036 6 KKKKRIAWGITGA-GHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVV 53 (187)
T ss_pred cccceEEEEEecc-ccccHHHHHHHHHHHhhcCCceEEEeehhhHHHHH
Confidence 3467888666655 88887 88999999998 7999999998877654
No 296
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.97 E-value=21 Score=32.53 Aligned_cols=52 Identities=12% Similarity=0.247 Sum_probs=37.0
Q ss_pred ceEEecCCcchHHHHHhc----CCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH
Q 042709 288 AWFLSHCGWNSTMEGLSM----GVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND 359 (398)
Q Consensus 288 ~~~ItHgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~ 359 (398)
+++|+=||=||++.+.+. ++|++.+-. - .+|.- -.++++++.+++.++++++
T Consensus 70 Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~--------G------~lGFL------t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 70 KFAIVLGGDGTVLSAARQLAPCGIPLLTINT--------G------HLGFL------TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------C------CCccc------ccCCHHHHHHHHHHHHcCC
Confidence 349999999999999774 778877521 0 12211 2356789999999999764
No 297
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=52.80 E-value=13 Score=35.70 Aligned_cols=36 Identities=11% Similarity=0.320 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
.+.++|+++-+++.|| +.|.-|+..|++|++..-+.
T Consensus 34 LkgKtIaIIGyGSqG~-----AqAlNLrdSGvnVvvglr~~ 69 (487)
T PRK05225 34 LKGKKIVIVGCGAQGL-----NQGLNMRDSGLDISYALRKE 69 (487)
T ss_pred hCCCEEEEEccCHHHH-----HHhCCCccccceeEEecccc
Confidence 4679999999999999 66777888899999877653
No 298
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=52.71 E-value=74 Score=31.58 Aligned_cols=93 Identities=18% Similarity=0.120 Sum_probs=56.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccc--hHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCC
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEFI--HAKIIASMQGKAENSSSQIMLVSIPDGLDLQADER 85 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (398)
..++|++++.- -.-.+++++.|. +-|-+|..+++... .+.+++... .+ .+.. ...
T Consensus 291 l~Gkrv~I~gd-----~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~~~~~~--------~~-----~~~~----~i~ 348 (519)
T PRK02910 291 LTGKRVFVFGD-----ATHAVAAARILSDELGFEVVGAGTYLREDARWVRAAAK--------EY-----GDEA----LIT 348 (519)
T ss_pred hcCCEEEEEcC-----cHHHHHHHHHHHHhcCCeEEEEecCCcchhHHHHHHHH--------hc-----CCCe----EEe
Confidence 35678776653 234578889998 68999998877432 333333221 11 1100 022
Q ss_pred CCHHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 86 EDPHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
+|..+.. +.+++. ||+||.+. ....+|+++|||++.++
T Consensus 349 ~D~~el~----~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 349 DDYLEVE----DAIAEAAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred cCHHHHH----HHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 2333333 333455 99999886 47789999999998765
No 299
>PRK08506 replicative DNA helicase; Provisional
Probab=52.58 E-value=42 Score=32.85 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=36.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKII 55 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 55 (398)
-=+++...|+.|=..-.+.+|...++.|+.|.|++.+-....+.
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 34567777899999999999999999999999999987666543
No 300
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=52.31 E-value=20 Score=31.00 Aligned_cols=26 Identities=12% Similarity=0.360 Sum_probs=20.5
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 23 GHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 23 GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
-|..-|...|+.|.++|++|.++...
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 36778999999999999999999987
No 301
>PRK04296 thymidine kinase; Provisional
Probab=52.12 E-value=90 Score=26.11 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=29.2
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 13 HVLVIPFP-ALGHVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 13 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
.|.+++.+ +.|=..-.+.++.++..+|.+|.++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 45555654 999999999999999999999998854
No 302
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.83 E-value=18 Score=32.37 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=37.9
Q ss_pred cccCCCCcceEEecCCcchHHHHHh----cCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHH
Q 042709 280 NDLGHPSIAWFLSHCGWNSTMEGLS----MGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKAL 355 (398)
Q Consensus 280 ~lL~~~~~~~~ItHgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~ 355 (398)
.+...+++ +|+=||=||+..+.+ .++|++.+-. . .+|.-. .++++++.+++.++
T Consensus 38 ~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~--------G------~lGFL~------~~~~~~~~~~l~~~ 95 (272)
T PRK02231 38 EIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINR--------G------NLGFLT------DIDPKNAYEQLEAC 95 (272)
T ss_pred HhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC--------C------CCcccc------cCCHHHHHHHHHHH
Confidence 33444566 999999999998865 3678776521 1 133222 35778888888888
Q ss_pred hcC
Q 042709 356 LKN 358 (398)
Q Consensus 356 l~~ 358 (398)
+++
T Consensus 96 ~~~ 98 (272)
T PRK02231 96 LER 98 (272)
T ss_pred Hhc
Confidence 873
No 303
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=51.70 E-value=44 Score=24.43 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=26.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
|+..||++++..+.|--.-.-.+=+.+.++|.++.+...+
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 4568999888877663344455566667788877665553
No 304
>PRK11519 tyrosine kinase; Provisional
Probab=51.55 E-value=1.8e+02 Score=30.38 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=32.3
Q ss_pred CCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 11 QPHVLVIPF--PALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 11 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
+.|+++++. |+.|=..-...||..|++.|++|.++-..-
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 556665554 788999999999999999999999997653
No 305
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=51.04 E-value=46 Score=32.92 Aligned_cols=97 Identities=18% Similarity=0.074 Sum_probs=60.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcC-CCCC---CCCCCCC
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIP-DGLD---LQADERE 86 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~ 86 (398)
+.-+++...|+.|-..-...++...+++|.+|.|++.+...+.+.+..... ++.+.++- .+.- .......
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~------g~~~~~~~~~g~l~i~~~~~~~~ 346 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSW------GIDLEKMEEKGLLKIICARPESY 346 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHc------CCChHHHhhcCCceeecCCcccC
Confidence 455677777899999999999999999999999999987776664442111 22221111 0000 0000112
Q ss_pred CHHHHHhhchhhccCC-ccEEEecCcch
Q 042709 87 DPHKLMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 87 ~~~~~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
....+...+.+.++.. +|+||.|.+..
T Consensus 347 ~~~~~~~~i~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 347 GLEDHLIIIKREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 2344444555555556 99999998864
No 306
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=50.96 E-value=33 Score=28.62 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=24.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
|||.++.- .|++- -.+.++..+|||+||-++-...
T Consensus 1 mKIaiIgA--sG~~G--s~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGA--SGKAG--SRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEec--CchhH--HHHHHHHHhCCCeeEEEEeChH
Confidence 56775543 33332 3578999999999999886543
No 307
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=50.90 E-value=1.2e+02 Score=27.68 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
+..|++.-.++.|=..-+..|+..|.++|+.|.++.....
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3555677778999999999999999999999999886643
No 308
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=50.83 E-value=1.1e+02 Score=25.11 Aligned_cols=91 Identities=11% Similarity=0.123 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchHHH-HHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCC-ccE
Q 042709 28 LMKLATKIAEHGIDVTFVNTEFIHAKI-IASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTEC-TAC 105 (398)
Q Consensus 28 ~l~La~~L~~rGh~Vt~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pD~ 105 (398)
..++-+.|+++|+.+.++|........ ...+.. .-+.+.-..+.... ...++..+...+.+.--.. =-+
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~l~------~~f~~~~~~~~~~~---~kp~p~~~~~~~~~~~~~~~~~v 162 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKNAPTVLEKLGLI------DYFDAIVDPAEIKK---GKPDPEIFLAAAEGLGVSPSECI 162 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCccHHHHHHhcCcH------hhCcEEEehhhcCC---CCCChHHHHHHHHHcCCCHHHeE
Confidence 577889999999999999865433322 222110 11222211111111 1222222222222211112 245
Q ss_pred EEecCcchhHHHHHHHhCCceEEE
Q 042709 106 VIADISVGWALEVAEAIGIARAAF 129 (398)
Q Consensus 106 vi~D~~~~~~~~~A~~lgiP~v~~ 129 (398)
+|-|. ......|+..|+++|.+
T Consensus 163 ~vgD~--~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 163 GIEDA--QAGIEAIKAAGMFAVGV 184 (185)
T ss_pred EEecC--HHHHHHHHHcCCEEEec
Confidence 55565 47999999999999864
No 309
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=50.45 E-value=43 Score=27.30 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.2
Q ss_pred eEEecCCcc------hHHHHHhcCCceeccc
Q 042709 289 WFLSHCGWN------STMEGLSMGVPFLCWP 313 (398)
Q Consensus 289 ~~ItHgG~~------s~~eal~~GvP~v~~P 313 (398)
++++|+|-| .+.||...++|||++.
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 388898865 6779999999999994
No 310
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=50.31 E-value=2.1e+02 Score=26.31 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=57.6
Q ss_pred CCEEEEEcCCCcc---C--HHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCC
Q 042709 11 QPHVLVIPFPALG---H--VAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADER 85 (398)
Q Consensus 11 ~~~il~~~~~~~G---H--~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (398)
+.-|++.|+.+.| . .--+.+|++.|.++|.+|.+++++...+...+..... +-....+. ..
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~------~~~~~~l~--------g~ 239 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALL------PGELRNLA--------GE 239 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhC------CcccccCC--------CC
Confidence 3445566554322 2 2258899999999999999999876655443331100 00111110 12
Q ss_pred CCHHHHHhhchhhccCCccEEEecCcchhHHHHHHHhCCceEEEcC
Q 042709 86 EDPHKLMTEDPQADTECTACVIADISVGWALEVAEAIGIARAAFVP 131 (398)
Q Consensus 86 ~~~~~~~~~~~~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 131 (398)
.++.++..-+.. -|++|+--. +..-+|..+|+|++.++.
T Consensus 240 ~sL~el~ali~~-----a~l~I~~DS--Gp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 240 TSLDEAVDLIAL-----AKAVVTNDS--GLMHVAAALNRPLVALYG 278 (334)
T ss_pred CCHHHHHHHHHh-----CCEEEeeCC--HHHHHHHHcCCCEEEEEC
Confidence 233333332221 577776543 577889999999998765
No 311
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.30 E-value=46 Score=31.69 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=36.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
+..|+++-..+.|=..-...||..|..+|.+|.+++...+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 45777888889999999999999999999999999997765
No 312
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=50.21 E-value=26 Score=29.72 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=27.9
Q ss_pred ccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042709 7 LSCRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVN 46 (398)
Q Consensus 7 ~~m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 46 (398)
..+++++|++.-++..| ..+|+.|.+.||+|++..
T Consensus 24 ~~l~gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 24 DSLEGKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCCCCCEEEEECCCHHH-----HHHHHHHHHCCCEEEEEc
Confidence 45678999999886544 678999999999999543
No 313
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.16 E-value=28 Score=31.46 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=37.7
Q ss_pred CCCCcceEEecCCcchHHHHHhc----CCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcC
Q 042709 283 GHPSIAWFLSHCGWNSTMEGLSM----GVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKN 358 (398)
Q Consensus 283 ~~~~~~~~ItHgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~ 358 (398)
..+++ +|+-||=||++.+.+. ++|++.+-. - .+|. + ..++++++.+++.+++++
T Consensus 63 ~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~--------G------~lGF-L-----t~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 63 KISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA--------G------HLGF-L-----TDITVDEAEKFFQAFFQG 120 (287)
T ss_pred cCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC--------C------Cccc-C-----CcCCHHHHHHHHHHHHcC
Confidence 34555 9999999999988663 678766511 0 1222 1 235788999999998876
Q ss_pred H
Q 042709 359 D 359 (398)
Q Consensus 359 ~ 359 (398)
+
T Consensus 121 ~ 121 (287)
T PRK14077 121 E 121 (287)
T ss_pred C
Confidence 4
No 314
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=50.11 E-value=46 Score=25.88 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=27.1
Q ss_pred CcccccccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 1 METQVQLSCRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 1 ~~~~~~~~m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
|+++..++ .++||.|+-.+--| ..|++.|.++||+|+-+...+.
T Consensus 1 ~~~~~~~~-~~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 1 MNTPATQA-ARLKIGIIGAGRVG-----TALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp ------------EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSCHH
T ss_pred CCccccCC-CccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCc
Confidence 44554332 26899999887555 3689999999999988877554
No 315
>PHA02754 hypothetical protein; Provisional
Probab=49.89 E-value=27 Score=22.55 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=19.7
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHH
Q 042709 351 NVKALLKNDGIKGNSLKLKEIARKI 375 (398)
Q Consensus 351 ai~~~l~~~~~~~~a~~l~~~~~~~ 375 (398)
.|.+++.+.+|++..+++++.+.++
T Consensus 6 Ei~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 6 EIPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 3455556788999999999998874
No 316
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=49.56 E-value=91 Score=26.45 Aligned_cols=106 Identities=12% Similarity=-0.005 Sum_probs=51.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHG--IDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
|||+++..+. |+. +.+|.+.+.+.+ ++|.++.+......+.+. +...++.+..++...... ..
T Consensus 2 ~ki~vl~sg~-gs~--~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~------a~~~gIp~~~~~~~~~~~---~~--- 66 (200)
T PRK05647 2 KRIVVLASGN-GSN--LQAIIDACAAGQLPAEIVAVISDRPDAYGLER------AEAAGIPTFVLDHKDFPS---RE--- 66 (200)
T ss_pred ceEEEEEcCC-Chh--HHHHHHHHHcCCCCcEEEEEEecCccchHHHH------HHHcCCCEEEECccccCc---hh---
Confidence 8899888866 433 346667777764 778876554321222111 111267776654321110 11
Q ss_pred HHHhhchhhccCC-ccEEEecCcch-hHHHHHHHhCCceEEEcCC
Q 042709 90 KLMTEDPQADTEC-TACVIADISVG-WALEVAEAIGIARAAFVPF 132 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~-~~~~~A~~lgiP~v~~~~~ 132 (398)
.+-..+.+.++.. ||++|+-.+.. ....+-+...-.++=+.++
T Consensus 67 ~~~~~~~~~l~~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHps 111 (200)
T PRK05647 67 AFDAALVEALDAYQPDLVVLAGFMRILGPTFVSAYEGRIINIHPS 111 (200)
T ss_pred HhHHHHHHHHHHhCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCc
Confidence 1112222333455 99999865532 3333333333344444433
No 317
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=49.21 E-value=33 Score=33.46 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=38.4
Q ss_pred CCCcceEEecCCcchHHHHHhc----CCceecccCccchhhHHHhhcccee-eEEEecCCCCCCcCHHHHHHHHHHHhcC
Q 042709 284 HPSIAWFLSHCGWNSTMEGLSM----GVPFLCWPSFADQHHNRNYICDVWK-IGVQLLPDENGIITRQEIQINVKALLKN 358 (398)
Q Consensus 284 ~~~~~~~ItHgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~g-~g~~l~~~~~~~~~~~~l~~ai~~~l~~ 358 (398)
.+++ +|+=||-||++.|.+. ++|++.+ | +| +|.. -.++++++.++|.+++++
T Consensus 262 ~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N-------~G~LGFL------t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 262 KVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------S-------MGSLGFM------TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred CCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------e-------CCCccee------cccCHHHHHHHHHHHHcC
Confidence 3455 9999999999999774 4676654 2 12 4432 235789999999999976
Q ss_pred H
Q 042709 359 D 359 (398)
Q Consensus 359 ~ 359 (398)
+
T Consensus 319 ~ 319 (508)
T PLN02935 319 P 319 (508)
T ss_pred C
Confidence 4
No 318
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.15 E-value=2.2e+02 Score=26.60 Aligned_cols=120 Identities=13% Similarity=-0.006 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCC--C
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERE--D 87 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 87 (398)
++.|+.++..+-.||--.|--=|..|++.|.+|.+++.-......+ . ...+.++++.++..--......- -
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~-l------~~hprI~ih~m~~l~~~~~~p~~~~l 83 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEE-L------LNHPRIRIHGMPNLPFLQGGPRVLFL 83 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHH-H------hcCCceEEEeCCCCcccCCCchhhhh
Confidence 5789999999999999999999999999999999999765433321 1 11368999998743211110110 0
Q ss_pred H----HHHHhhchhhccCC-ccEEEecCcc-hhHHHHHH----HhCCceEEEcCCcHHH
Q 042709 88 P----HKLMTEDPQADTEC-TACVIADISV-GWALEVAE----AIGIARAAFVPFGPGS 136 (398)
Q Consensus 88 ~----~~~~~~~~~~~~~~-pD~vi~D~~~-~~~~~~A~----~lgiP~v~~~~~~~~~ 136 (398)
+ .+++.-+...+.-. +|.++.-.-- .....+|. ..|...+.=|....++
T Consensus 84 ~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 84 PLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred HHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1 11111112222444 8887776442 23444443 4478888877766665
No 319
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=49.13 E-value=1.9e+02 Score=28.02 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHH-HHHhCCCeEEEEeCcc-chHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLAT-KIAEHGIDVTFVNTEF-IHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERED 87 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~-~L~~rGh~Vt~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (398)
.+.||+++..+. -.+.+++ .|.+-|-+|..++++. ..+...+.... .+.-.+. + ...+
T Consensus 316 ~gkrvai~~~~~-----~~~~~~~~ll~elGm~v~~~~~~~~~~~~~~~~l~~-----l~~~~~~-v---------~~~~ 375 (443)
T TIGR01862 316 QGKRVCLYIGGS-----RLWHWIGSAEEDLGMEVVAVGYEFAHEDDYEKTMKR-----MGEGTLL-I---------DDPN 375 (443)
T ss_pred cCCeEEEECCch-----hHHHHHHHHHHHCCCEEEEeccccccHHHHHHHHHh-----CCCceEE-e---------cCCC
Confidence 467888865433 2346888 7788999999987654 22222222100 0011111 1 1112
Q ss_pred HHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 88 PHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
..++...+ +.. ||++|.... +..+|+++|||++.+.
T Consensus 376 ~~e~~~~i----~~~~pdllig~s~---~~~~A~~lgip~~~~~ 412 (443)
T TIGR01862 376 ELEFEEIL----EKLKPDIIFSGIK---EKFVAQKLGVPYRQMH 412 (443)
T ss_pred HHHHHHHH----HhcCCCEEEEcCc---chhhhhhcCCCeEecC
Confidence 22232222 344 999998864 6889999999999754
No 320
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=48.87 E-value=34 Score=29.47 Aligned_cols=38 Identities=16% Similarity=0.401 Sum_probs=32.7
Q ss_pred CEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPF--PALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
.+|.+++. ++-|-..-.-.|+-.|+++|+.|.++-..-
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 56777777 488999999999999999999999998763
No 321
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=48.70 E-value=31 Score=30.63 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=33.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|.|.++.=++-|-..-...||..|+++|++|.++=...
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 56778866899999999999999999999999886653
No 322
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=48.61 E-value=27 Score=33.56 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
|+.+||.|+-.+..| +.+|..|+++||+|+.+-.
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 556889988666544 5789999999999998865
No 323
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=48.53 E-value=1.6e+02 Score=25.78 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEeCccchH---HHHHhhcccccCCCCCeEEEEcC-CCCCCCCC-CCCCHHHHHhhchhh
Q 042709 25 VAPLMKLATKIAEHG-IDVTFVNTEFIHA---KIIASMQGKAENSSSQIMLVSIP-DGLDLQAD-EREDPHKLMTEDPQA 98 (398)
Q Consensus 25 ~~p~l~La~~L~~rG-h~Vt~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 98 (398)
++|..++.++|+.-| .+|.+++| ...+ .+.+... ..|+++..+. -+...... ..-+.....+...+.
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTP-Y~~~v~~~~~~~l~------~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~ 177 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTP-YTPETSRPMAQYFA------VRGFEIVNFTCLGLTDDREMARISPDCIVEAALAA 177 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECC-CcHHHHHHHHHHHH------hCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHh
Confidence 467888888999988 66666665 3322 2222211 1267766653 22222211 222333444444333
Q ss_pred ccCC-ccEEEecCcchhHH----HHHHHhCCceEEEc
Q 042709 99 DTEC-TACVIADISVGWAL----EVAEAIGIARAAFV 130 (398)
Q Consensus 99 ~~~~-pD~vi~D~~~~~~~----~~A~~lgiP~v~~~ 130 (398)
... +|.|+.-.....+. .+=+.+|+|+++..
T Consensus 178 -~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSN 213 (239)
T TIGR02990 178 -FDPDADALFLSCTALRAATCAQRIEQAIGKPVVTSN 213 (239)
T ss_pred -cCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHH
Confidence 345 88887765444333 34456799997633
No 324
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=48.39 E-value=28 Score=31.55 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=37.4
Q ss_pred CCCcceEEecCCcchHHHHHhc----CCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH
Q 042709 284 HPSIAWFLSHCGWNSTMEGLSM----GVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND 359 (398)
Q Consensus 284 ~~~~~~~ItHgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~ 359 (398)
.+++ +|+-||=||+.++++. ++|++.+- .- .+|.- ..++.+++.++|.++++++
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn--------~G------~lGFL------~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN--------HG------RLGFI------TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc--------CC------Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 3455 9999999999999874 56776652 11 12322 2357788999998888754
No 325
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=48.26 E-value=2e+02 Score=27.11 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=36.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKII 55 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 55 (398)
.-+++.-.|+.|=..=++.++..++++|..|.|++.+...+.+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 44567777899999999999999999999999999876665543
No 326
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=48.04 E-value=1.1e+02 Score=26.48 Aligned_cols=100 Identities=13% Similarity=0.157 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCc-c-CHHH--HHHHHHHHHhCCCeEEEEeCccc--hHHHHHhhcccccCCCCCeE--EEEcCCCCCCCC
Q 042709 11 QPHVLVIPFPAL-G-HVAP--LMKLATKIAEHGIDVTFVNTEFI--HAKIIASMQGKAENSSSQIM--LVSIPDGLDLQA 82 (398)
Q Consensus 11 ~~~il~~~~~~~-G-H~~p--~l~La~~L~~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 82 (398)
+..|++.+..+. . .+.+ +.+|++.|.++|.+|.+++++.. .+.+..... +.. +..+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~--------~~~~~~~~~~------- 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA--------GLQNPVINLA------- 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT--------THTTTTEEET-------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH--------hcccceEeec-------
Confidence 456777766533 2 2222 69999999999999999888877 233322221 111 22221
Q ss_pred CCCCCHHHHHhhchhhccCCccEEEecCcchhHHHHHHHhCCceEEEcCCc
Q 042709 83 DEREDPHKLMTEDPQADTECTACVIADISVGWALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~ 133 (398)
...++.++...+.. .|++|+--. +..-+|..+|+|++.++...
T Consensus 170 -~~~~l~e~~ali~~-----a~~~I~~Dt--g~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 170 -GKTSLRELAALISR-----ADLVIGNDT--GPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp -TTS-HHHHHHHHHT-----SSEEEEESS--HHHHHHHHTT--EEEEESSS
T ss_pred -CCCCHHHHHHHHhc-----CCEEEecCC--hHHHHHHHHhCCEEEEecCC
Confidence 22234443332221 567766533 57889999999999987544
No 327
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=47.97 E-value=37 Score=26.92 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 29 MKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 29 l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
.-+|..|.+.||+|++++.....+.+.+.
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 34688999999999999998855556655
No 328
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=47.87 E-value=22 Score=28.96 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
++|.|+-.+..| ..+|+.|.++||+|+.+.-
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 789999887666 5789999999999998763
No 329
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=47.84 E-value=1.6e+02 Score=26.23 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCCccE
Q 042709 26 APLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTECTAC 105 (398)
Q Consensus 26 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD~ 105 (398)
.-+.+|++.|.++|++|++++.+...+..++.... . .......+ . ...++.++...+.. -|+
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~---~--~~~~~~~~------~--~~~~l~e~~~li~~-----~~l 201 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIAAA---L--GGPRVVNL------A--GKTSLRELAALLAR-----ADL 201 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHh---c--CCCccccC------c--CCCCHHHHHHHHHh-----CCE
Confidence 35889999999999999999887765554433100 0 00011111 0 12234444333322 577
Q ss_pred EEecCcchhHHHHHHHhCCceEEEcCC
Q 042709 106 VIADISVGWALEVAEAIGIARAAFVPF 132 (398)
Q Consensus 106 vi~D~~~~~~~~~A~~lgiP~v~~~~~ 132 (398)
+|+--. +..-+|..+|+|++.+...
T Consensus 202 ~I~~Ds--g~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 202 VVTNDS--GPMHLAAALGTPTVALFGP 226 (279)
T ss_pred EEeeCC--HHHHHHHHcCCCEEEEECC
Confidence 776433 5777888999999998764
No 330
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=47.83 E-value=51 Score=26.89 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.0
Q ss_pred ceEEecCCcc------hHHHHHhcCCceeccc
Q 042709 288 AWFLSHCGWN------STMEGLSMGVPFLCWP 313 (398)
Q Consensus 288 ~~~ItHgG~~------s~~eal~~GvP~v~~P 313 (398)
+++++|+|-| .+.+|...++|||++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3389998866 7789999999999996
No 331
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=47.65 E-value=1.3e+02 Score=28.86 Aligned_cols=94 Identities=10% Similarity=0.120 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCcc-chHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEF-IHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERED 87 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (398)
.+++|+++..+. | .+.+++.|. +.|-+|+.+++.. ..+..++.... .+...+. + ...+
T Consensus 287 ~Gk~vai~~~~~--~---~~~la~~l~~elG~~v~~i~~~~~~~~~~~~~~~~-----~~~~~~~-v---------~d~~ 346 (415)
T cd01977 287 KGKKVCIWTGGP--K---LWHWTKVIEDELGMQVVAMSSKFGHQEDFEKVIAR-----GGEGTIY-I---------DDPN 346 (415)
T ss_pred CCCEEEEECCCc--h---HHHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHh-----cCCceEE-E---------eCCC
Confidence 478888865442 2 589999997 8999999886643 22222221100 0001110 0 0111
Q ss_pred HHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 88 PHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
..++.+.+ +.. ||+||.... +..+|+++|||++.+.
T Consensus 347 ~~e~~~~~----~~~~pdliig~s~---~~~~a~~lgip~~~~~ 383 (415)
T cd01977 347 ELEFFEIL----EMLKPDIILTGPR---VGELVKKLHVPYVNIH 383 (415)
T ss_pred HHHHHHHH----HhcCCCEEEecCc---cchhhhhcCCCEEecc
Confidence 11222222 344 999999865 4579999999999863
No 332
>PRK13604 luxD acyl transferase; Provisional
Probab=47.63 E-value=40 Score=30.74 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVN 46 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 46 (398)
+...+++..+..++-.-+..+|+.|+++|+.|.-+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 456777788887887779999999999999988764
No 333
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=47.54 E-value=36 Score=33.18 Aligned_cols=48 Identities=17% Similarity=0.082 Sum_probs=38.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
.+++||++...++ --.+=...|++.|.++|++|.++.+++-...+...
T Consensus 68 l~~k~IllgVtGs-IAayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 68 LASKRVTLIIGGG-IAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred cCCCEEEEEEccH-HHHHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 3468888887765 34568899999999999999999999877766543
No 334
>PRK09739 hypothetical protein; Provisional
Probab=47.48 E-value=51 Score=27.80 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=23.3
Q ss_pred CCCCEEEEEcC-CCc-cCHHH-HHHHHHHHHhCCCeEEEEe
Q 042709 9 CRQPHVLVIPF-PAL-GHVAP-LMKLATKIAEHGIDVTFVN 46 (398)
Q Consensus 9 m~~~~il~~~~-~~~-GH~~p-~l~La~~L~~rGh~Vt~~~ 46 (398)
|+.|||+++.. |-. |...- .-.+++.|.++||+|+++-
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 44588886644 533 22222 3345667778899998765
No 335
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=47.15 E-value=1.8e+02 Score=24.72 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=31.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 14 VLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
+++.-.|+.|=..-.+.+|..+..+|..|.|++++.
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 557777899999999999999999999999998863
No 336
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=47.03 E-value=38 Score=30.66 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=34.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
|||+++-=|+-|=..-.+.||..|+++|++|.++-....
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 568888889999999999999999999999998866443
No 337
>PRK08939 primosomal protein DnaI; Reviewed
Probab=46.90 E-value=41 Score=30.76 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=39.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
..+++...++.|=.+=+.++|.+|.++|..|+|+..+.+...+...
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~ 202 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS 202 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH
Confidence 4577888888899999999999999999999999998887777654
No 338
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.86 E-value=30 Score=31.59 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
.+|||.|+-.+..| .++|+.|.++||+|+++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 35789999887766 478999999999999997653
No 339
>PRK09165 replicative DNA helicase; Provisional
Probab=46.82 E-value=1.3e+02 Score=29.81 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=34.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC---------------CCeEEEEeCccchHHHHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEH---------------GIDVTFVNTEFIHAKIIA 56 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~Vt~~~~~~~~~~v~~ 56 (398)
=+++..-|+.|=..-.+.+|...+.+ |..|.|++.+-..+.+..
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 35677778999999999998888754 889999999877765533
No 340
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=46.63 E-value=1.5e+02 Score=28.87 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
.++|+++...+ .-.+.|++.|.+.|-+|..+.+....+..++ + +. .....+|..
T Consensus 310 ~gkrvai~~~~-----~~~~~la~~L~elG~~v~~~~~~~~~~~~~~------------~-----~~----~~i~~~D~~ 363 (455)
T PRK14476 310 GGKRVAIAAEP-----DLLLALGSFLAEMGAEIVAAVTTTKSPALED------------L-----PA----EEVLIGDLE 363 (455)
T ss_pred cCCEEEEEeCH-----HHHHHHHHHHHHCCCEEEEEEeCCCcHHHHh------------C-----Cc----CcEEeCCHH
Confidence 36788777432 4678899999999999988887653332221 1 00 000122333
Q ss_pred HHHhhchhhccCCccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 90 KLMTEDPQADTECTACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 90 ~~~~~~~~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
++-+.+ + .||++|.+.. ...+|+++|||++.+.
T Consensus 364 ~le~~~----~-~~dliig~s~---~~~~a~~~gip~~~~g 396 (455)
T PRK14476 364 DLEELA----E-GADLLITNSH---GRQAAERLGIPLLRVG 396 (455)
T ss_pred HHHHhc----c-CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 333322 2 4999999965 6889999999998743
No 341
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=46.28 E-value=2.5e+02 Score=26.08 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=35.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
+..|.+...|+.|=..=.-.|+..|.++|++|.+++.+...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 45567888899999999999999999999999999986543
No 342
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.16 E-value=46 Score=25.72 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=28.6
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 13 HVLVIPFP-ALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 13 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
-++++..| ..=.+.-.+-+...|.++|.+|++.+++.-.
T Consensus 5 vlv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~ 44 (148)
T COG4081 5 VLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAAL 44 (148)
T ss_pred EEEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhh
Confidence 34455555 3445556788899999999999999987643
No 343
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=46.16 E-value=1.5e+02 Score=27.15 Aligned_cols=31 Identities=10% Similarity=-0.077 Sum_probs=20.8
Q ss_pred ccEEEecCcc------hhHHHHHHHhCCceEEEcCCc
Q 042709 103 TACVIADISV------GWALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 103 pD~vi~D~~~------~~~~~~A~~lgiP~v~~~~~~ 133 (398)
.|.|..|... .....+|+.+++|++.+....
T Consensus 196 Ad~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 196 ADAITANGAVINKIGTSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred ccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccc
Confidence 5555555432 245788999999999876544
No 344
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.14 E-value=39 Score=33.68 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=28.6
Q ss_pred CEEEEEcC-------CCccCHHHHHH---HHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPF-------PALGHVAPLMK---LATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~-------~~~GH~~p~l~---La~~L~~rGh~Vt~~~~~~ 49 (398)
+++++.+. |..||++++++ +|+-++-+||+|.|+|..+
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtD 52 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTD 52 (558)
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 55665543 26799997775 5777888999999999764
No 345
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=46.06 E-value=54 Score=25.52 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=25.5
Q ss_pred CEEE-EEcCCCccCHH--HHHHHHHHHHhCCCeE-EEEeCccch
Q 042709 12 PHVL-VIPFPALGHVA--PLMKLATKIAEHGIDV-TFVNTEFIH 51 (398)
Q Consensus 12 ~~il-~~~~~~~GH~~--p~l~La~~L~~rGh~V-t~~~~~~~~ 51 (398)
||++ ++..+-+|+-. -.+.+|+.+.++||+| .++-..+..
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV 44 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGV 44 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHH
Confidence 3555 33444445554 4677899999999984 666554443
No 346
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=45.85 E-value=1.1e+02 Score=25.66 Aligned_cols=31 Identities=26% Similarity=0.149 Sum_probs=23.8
Q ss_pred ccEEEecCcch--hHHHHHHHhCCceEEEcCCc
Q 042709 103 TACVIADISVG--WALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 103 pD~vi~D~~~~--~~~~~A~~lgiP~v~~~~~~ 133 (398)
||+||.-.... .+..=|..+|||++.+.-+.
T Consensus 128 Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 128 PDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 99887755332 67888999999999987544
No 347
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=45.84 E-value=44 Score=30.34 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCCCccC----HHHHHHHHHHHHhCCCeEEEEeC
Q 042709 9 CRQPHVLVIPFPALGH----VAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 9 m~~~~il~~~~~~~GH----~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
|+++||+++..+..+- +.-...++++|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 6788999888764332 34566789999999999988854
No 348
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=45.54 E-value=63 Score=28.58 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhh
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASM 58 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~ 58 (398)
+.-+++.-.|+.|...-.+.++...+++|..|.|++.+.....+.+..
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~ 70 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENA 70 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHH
Confidence 566788888999999999999999999999999999998887776653
No 349
>PLN02240 UDP-glucose 4-epimerase
Probab=45.37 E-value=36 Score=31.52 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=25.0
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042709 8 SCRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVN 46 (398)
Q Consensus 8 ~m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 46 (398)
+|++++|++. ++.|.+- ..|++.|.++||+|+.+.
T Consensus 2 ~~~~~~vlIt--GatG~iG--~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVT--GGAGYIG--SHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEE--CCCChHH--HHHHHHHHHCCCEEEEEe
Confidence 4556676664 4556553 456899999999999886
No 350
>PRK06321 replicative DNA helicase; Provisional
Probab=45.34 E-value=73 Score=31.20 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=34.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCccchHHHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAE-HGIDVTFVNTEFIHAKII 55 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~ 55 (398)
=|++..-|+.|=..-.+.+|...+. .|..|.|++.+-....+.
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 3567777999999999999999874 599999999886665543
No 351
>PRK06835 DNA replication protein DnaC; Validated
Probab=45.21 E-value=45 Score=30.83 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=38.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIA 56 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 56 (398)
..++|+..++.|=..=..++|++|.++|+.|.|++.+.+...+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 567788778888888888999999999999999999887776654
No 352
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=45.16 E-value=47 Score=27.09 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=33.0
Q ss_pred CEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 12 PHVL-VIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 12 ~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
|+|+ |+-+-..|=..=+-.|.+.|.+||++|..+-+..-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 5565 77777889999999999999999999999887544
No 353
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=45.09 E-value=1.2e+02 Score=25.44 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch-----HHHHHhhcccccCCCCCeEEEEcCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH-----AKIIASMQGKAENSSSQIMLVSIPDGLDLQADE 84 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (398)
++-=|.+++..+.|-..-.+.+|-+-.-+|.+|.++-.=... ...... ....+.|...++++.-....
T Consensus 27 ~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~-------~~~~v~~~~~~~g~tw~~~~ 99 (198)
T COG2109 27 EKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEK-------FGLGVEFHGMGEGFTWETQD 99 (198)
T ss_pred ccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHh-------hccceeEEecCCceeCCCcC
Confidence 334477888999999999999988888899888877542222 122111 01368888888776544321
Q ss_pred C-CCHH---HHHhhchhhccCC-ccEEEecCcch
Q 042709 85 R-EDPH---KLMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 85 ~-~~~~---~~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
. .+.. ..++...+.+++. +|+||.|.+.+
T Consensus 100 ~~~d~~aa~~~w~~a~~~l~~~~ydlviLDEl~~ 133 (198)
T COG2109 100 READIAAAKAGWEHAKEALADGKYDLVILDELNY 133 (198)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 1 1221 2233333344667 99999998865
No 354
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=45.08 E-value=31 Score=29.44 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=61.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH-H
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH-K 90 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 90 (398)
+=|++...|+.|-..-.-.||++|.+++|+|...+..... ++.. ++.++.. .+.+. .
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~----------------~i~~---DEslpi~---ke~yres 59 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR----------------GILW---DESLPIL---KEVYRES 59 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh----------------heec---ccccchH---HHHHHHH
Confidence 4466777799999999999999999999999876653321 1211 1111111 11111 1
Q ss_pred HHhhchhhc-cCC-ccEEEecCcchh------HHHHHHHhCCceEEEcCCcHHHH
Q 042709 91 LMTEDPQAD-TEC-TACVIADISVGW------ALEVAEAIGIARAAFVPFGPGSL 137 (398)
Q Consensus 91 ~~~~~~~~~-~~~-pD~vi~D~~~~~------~~~~A~~lgiP~v~~~~~~~~~~ 137 (398)
+.+...+.+ +.- --+||+|..-+. -...|..+..++..+....+...
T Consensus 60 ~~ks~~rlldSalkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDt 114 (261)
T COG4088 60 FLKSVERLLDSALKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDT 114 (261)
T ss_pred HHHHHHHHHHHHhcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHH
Confidence 111222211 111 338899877552 24678888999988877655443
No 355
>PRK08223 hypothetical protein; Validated
Probab=44.78 E-value=2.4e+02 Score=25.53 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=28.0
Q ss_pred cccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCc
Q 042709 6 QLSCRQPHVLVIPFPALGHVAPLMKLATKIAEHG-IDVTFVNTE 48 (398)
Q Consensus 6 ~~~m~~~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~ 48 (398)
|..++..+|+++-.++.| -.+++.|+..| -+++++=.+
T Consensus 22 Q~kL~~s~VlIvG~GGLG-----s~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVG-----GIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHHhcCCEEEECCCHHH-----HHHHHHHHHhCCCeEEEEeCC
Confidence 666788999999998766 35678888988 455555443
No 356
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=44.77 E-value=50 Score=29.39 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|.++||+++.+++...-. ++.++|.++|.++.++....
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~ 38 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHIND 38 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecc
Confidence 456899999998876443 66899999999999987643
No 357
>PRK08006 replicative DNA helicase; Provisional
Probab=44.28 E-value=64 Score=31.54 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=34.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCccchHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAE-HGIDVTFVNTEFIHAKI 54 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v 54 (398)
-=|++..-|+.|=..-.+.+|...+. .|+.|.|++.+-..+.+
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 33566777999999999999998874 69999999998666554
No 358
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=44.27 E-value=83 Score=27.41 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhccc-cc----CCCCCeEEEEcCCC-CCC---C
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGK-AE----NSSSQIMLVSIPDG-LDL---Q 81 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~-~~----~~~~~~~~~~~~~~-~~~---~ 81 (398)
+.-+++.-.|+.|-..-.+.++..-+++|..+.|++.+...+.+.+..... ++ .....+.+...... ... .
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~~~~~~ 100 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIGEAAER 100 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEecccccccccccc
Confidence 456778888999999988888877668999999999988776654432110 00 00112344332211 100 0
Q ss_pred C----CCCCCHHHHHhhchhhccCC-ccEEEecCcch
Q 042709 82 A----DEREDPHKLMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 82 ~----~~~~~~~~~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
. ....++..+...+.+..+.. ++.||.|++..
T Consensus 101 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 101 EKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred ccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 0 01234555666666655566 99999998764
No 359
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=44.23 E-value=41 Score=27.41 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch--HHHHHhhcccccCCCCCeEEEEcC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH--AKIIASMQGKAENSSSQIMLVSIP 75 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~ 75 (398)
+.++|+++-++++||. -|.-|++.|++|++..-+... ++.++. |++..++.
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~~----------Gf~v~~~~ 55 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKAD----------GFEVMSVA 55 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHHT----------T-ECCEHH
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHHC----------CCeeccHH
Confidence 4688999999999985 578899999999998876553 334443 67666654
No 360
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=44.18 E-value=55 Score=28.88 Aligned_cols=94 Identities=23% Similarity=0.212 Sum_probs=51.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKL 91 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (398)
|||+++..-+.| ..|++.|.++|+ |++-+..+......+.. .+...... .++ .+...+
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~-------~~~~~v~~--G~l-------g~~~~l 58 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE-------LPGLEVRV--GRL-------GDEEGL 58 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc-------cCCceEEE--CCC-------CCHHHH
Confidence 678887665555 579999999999 66555444443332210 00111111 111 122223
Q ss_pred HhhchhhccCC-ccEEEecCcch-------hHHHHHHHhCCceEEEcCC
Q 042709 92 MTEDPQADTEC-TACVIADISVG-------WALEVAEAIGIARAAFVPF 132 (398)
Q Consensus 92 ~~~~~~~~~~~-pD~vi~D~~~~-------~~~~~A~~lgiP~v~~~~~ 132 (398)
...+ ++. +|+|| |..-+ -+..+|+.+|||++.|-..
T Consensus 59 ~~~l----~~~~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~eRp 102 (249)
T PF02571_consen 59 AEFL----RENGIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFERP 102 (249)
T ss_pred HHHH----HhCCCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEEcC
Confidence 3222 344 77665 33323 2567889999999986643
No 361
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=43.96 E-value=2.6e+02 Score=25.76 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCc-----cCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCC
Q 042709 11 QPHVLVIPFPAL-----GHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADER 85 (398)
Q Consensus 11 ~~~il~~~~~~~-----GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (398)
+..|+|.|..+. --..-+.+|++.|.++|.+|.+++++.-.+..++.... ...... +. ..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~--------~~~~~~---l~----~k 239 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG--------LPNAVI---LA----GK 239 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh--------cCCccc---cC----CC
Confidence 356777777222 13446899999999999999999988555554433211 110000 10 33
Q ss_pred CCHHHHHhhchhhccCCccEEEecCcchhHHHHHHHhCCceEEEcCCcH
Q 042709 86 EDPHKLMTEDPQADTECTACVIADISVGWALEVAEAIGIARAAFVPFGP 134 (398)
Q Consensus 86 ~~~~~~~~~~~~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~~~ 134 (398)
.++.++...+. ..|++|+-- .+..-+|..+|.|+|.+.....
T Consensus 240 ~sL~e~~~li~-----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t~ 281 (334)
T COG0859 240 TSLEELAALIA-----GADLVIGND--SGPMHLAAALGTPTIALYGPTS 281 (334)
T ss_pred CCHHHHHHHHh-----cCCEEEccC--ChHHHHHHHcCCCEEEEECCCC
Confidence 33444443331 156666543 3578899999999999886543
No 362
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=43.68 E-value=70 Score=29.26 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=25.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCccc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHG--IDVTFVNTEFI 50 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~ 50 (398)
+|||+...++ ++ ++++.|++.| ++|..+.....
T Consensus 2 ~~vLv~g~~~-~~-----~~~~~l~~~~~g~~vi~~d~~~~ 36 (326)
T PRK12767 2 MNILVTSAGR-RV-----QLVKALKKSLLKGRVIGADISEL 36 (326)
T ss_pred ceEEEecCCc-cH-----HHHHHHHHhccCCEEEEECCCCc
Confidence 8999998854 32 7899999984 99998876643
No 363
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=43.68 E-value=42 Score=29.77 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=32.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|+|.+..=++-|=..-.+.||..|+++|++|.++=-..
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 56777766888999999999999999999999885543
No 364
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=43.65 E-value=84 Score=24.61 Aligned_cols=42 Identities=29% Similarity=0.275 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
++.||++...+..+|-.----++..|...|++|+........
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~ 42 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTP 42 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCH
Confidence 367899999999999999999999999999999988865333
No 365
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=43.63 E-value=42 Score=29.82 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
.|.+.-=++-|-..-.+.||..|+++|++|.++=..
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 344554478999999999999999999999998554
No 366
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=43.60 E-value=2.6e+02 Score=27.28 Aligned_cols=96 Identities=11% Similarity=0.040 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc--ch----HHHHHhhcccccCCCCCeEEEEcCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF--IH----AKIIASMQGKAENSSSQIMLVSIPDGLDLQAD 83 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~--~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (398)
.++|++++. +-.-.+++++-|.+-|-++..+.... .. ..+++... ....+... +
T Consensus 304 ~Gkrv~i~g-----~~~~~~~l~~fl~elGm~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~v--i--------- 363 (454)
T cd01973 304 ANKKVAIFG-----HPDLVIGLAEFCLEVEMKPVLLLLGDDNSKYKKDPRIKALKE----KADYDMEI--V--------- 363 (454)
T ss_pred CCCeEEEEc-----CHHHHHHHHHHHHHCCCeEEEEEECCCCcccchhHHHHHHHh----hcCCCceE--E---------
Confidence 467887763 22457889999999998887733222 11 11111100 00000111 1
Q ss_pred CCCCHHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 84 EREDPHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
...+..++.+.+.+. +. ||++|... +...+|+++|||++.+.
T Consensus 364 ~~~d~~e~~~~i~~~--~~~~dliig~s---~~~~~A~~~gip~~~~g 406 (454)
T cd01973 364 TNADLWELEKRIKNK--GLELDLILGHS---KGRYIAIDNNIPMVRVG 406 (454)
T ss_pred ECCCHHHHHHHHHhc--CCCCCEEEECC---ccHHHHHHcCCCEEEec
Confidence 233455554443321 24 99999885 47899999999998754
No 367
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.40 E-value=1.2e+02 Score=26.24 Aligned_cols=109 Identities=12% Similarity=0.013 Sum_probs=59.4
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCccchH-HHHHhhcccccCCCCCeEEE--EcCCCCCCCCCCCCCHHHHHhhchh
Q 042709 21 ALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA-KIIASMQGKAENSSSQIMLV--SIPDGLDLQADEREDPHKLMTEDPQ 97 (398)
Q Consensus 21 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (398)
+..|+.-.+.++..++.||=.+.|+++..... .+++..... .+..+. -++.-+.......+....-.....+
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~-----~gy~~~~~w~~G~lTN~~~l~g~~~~~~~~~pd 164 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRA-----GGYSHNRKWLGGLLTNARELFGALVRKFLSLPD 164 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHh-----cCceeeeeeccceeecchhhcccccccccCCCc
Confidence 56888889999999999999999999975544 444332111 122211 1121111110000000000000111
Q ss_pred hc---cCC-ccEEEe-cCcch-hHHHHHHHhCCceEEEcCCcH
Q 042709 98 AD---TEC-TACVIA-DISVG-WALEVAEAIGIARAAFVPFGP 134 (398)
Q Consensus 98 ~~---~~~-pD~vi~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 134 (398)
.. ... +|+||+ |..-. .+..=|.+++||+|.+.=+..
T Consensus 165 ~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 165 ALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred ceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 11 334 788776 54444 788889999999998765443
No 368
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=43.31 E-value=59 Score=24.73 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=33.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
||++..-++.|=......+++.|+++|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999888765
No 369
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=43.21 E-value=69 Score=27.84 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=36.0
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 042709 13 HVLVIPF-PALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKI 54 (398)
Q Consensus 13 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 54 (398)
-|.|++. |+.|=..-.+.||.+|+++|-.|+++=...+.+..
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 3556666 79999999999999999999999999998877654
No 370
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.11 E-value=40 Score=29.69 Aligned_cols=42 Identities=10% Similarity=-0.119 Sum_probs=28.4
Q ss_pred cccccCC-CCEEEEEcCCCcc-CHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 4 QVQLSCR-QPHVLVIPFPALG-HVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 4 ~~~~~m~-~~~il~~~~~~~G-H~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
+||+.|+ +-|+++++..+.| - -=.++|+.|+++|++|.+..-
T Consensus 1 ~~~~~~~~~~k~~lItGas~g~G--IG~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 1 PMQPLLPLAGKRGLVVGIANEQS--IAWGCARAFRALGAELAVTYL 44 (258)
T ss_pred CCCcccccCCCEEEEECCCCCCc--HHHHHHHHHHHcCCEEEEEeC
Confidence 3566664 2366777665531 2 237899999999999988654
No 371
>PRK04328 hypothetical protein; Provisional
Probab=43.08 E-value=2.3e+02 Score=24.86 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=60.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhccc----cc-CCCCCeEEEEcCCC-CCC---C
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGK----AE-NSSSQIMLVSIPDG-LDL---Q 81 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~----~~-~~~~~~~~~~~~~~-~~~---~ 81 (398)
+.-+++.-.|+.|-..-.+.++..-+++|+.+.|++.+...+.+.+..... .. .....+.+...... ... .
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~~~~~~~~~~~ 102 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAFTGGIGSAAKR 102 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEecccccccccccc
Confidence 456777888899998888888877778899999999987776654431110 00 00012333332211 100 0
Q ss_pred C----CCCCCHHHHHhhchhhccCC-ccEEEecCcch
Q 042709 82 A----DEREDPHKLMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 82 ~----~~~~~~~~~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
. ....++..+...+.+..+.. ++.||.|+...
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~ 139 (249)
T PRK04328 103 EKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVST 139 (249)
T ss_pred ccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhH
Confidence 0 01234455555555555666 99999999853
No 372
>PRK05636 replicative DNA helicase; Provisional
Probab=42.98 E-value=33 Score=33.86 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=33.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccchHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEFIHAKI 54 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 54 (398)
-=|++..-|+.|=..-.+.+|...+ +.|..|.|++.+-....+
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 3356777789999999999998876 468999999988765544
No 373
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=42.86 E-value=1.1e+02 Score=27.11 Aligned_cols=18 Identities=6% Similarity=-0.267 Sum_probs=14.4
Q ss_pred hHHHHHHHhCCceEEEcC
Q 042709 114 WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 114 ~~~~~A~~lgiP~v~~~~ 131 (398)
....+|+.+++|++.+..
T Consensus 176 ~~Al~A~~~~vPv~V~~~ 193 (253)
T PRK06372 176 PLALCARYLKKPFYSLTI 193 (253)
T ss_pred HHHHHHHHcCCCEEEEee
Confidence 457889999999998544
No 374
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=42.81 E-value=2.3e+02 Score=25.13 Aligned_cols=77 Identities=13% Similarity=0.057 Sum_probs=46.8
Q ss_pred eEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCC-ccEEEecCcch--hHHH
Q 042709 41 DVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTEC-TACVIADISVG--WALE 117 (398)
Q Consensus 41 ~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pD~vi~D~~~~--~~~~ 117 (398)
+..+.+++.+.-..+.. |++...+.. .+ ..... .-+..+.+.+++. ..+|+++.... .+..
T Consensus 171 ~~~v~~H~af~Y~~~~y----------gl~~~~~~~---~~--~eps~-~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ 234 (266)
T cd01018 171 RAFMVYHPAWGYFARDY----------GLTQIPIEE---EG--KEPSP-ADLKRLIDLAKEKGVRVVFVQPQFSTKSAEA 234 (266)
T ss_pred CeEEEECchhHHHHHHc----------CCEEEecCC---CC--CCCCH-HHHHHHHHHHHHcCCCEEEEcCCCCcHHHHH
Confidence 34555666665555554 566554321 11 11112 2333344444666 99999998876 6778
Q ss_pred HHHHhCCceEEEcCCc
Q 042709 118 VAEAIGIARAAFVPFG 133 (398)
Q Consensus 118 ~A~~lgiP~v~~~~~~ 133 (398)
+|+..|+|.+.+.+..
T Consensus 235 la~~~g~~v~~ld~~~ 250 (266)
T cd01018 235 IAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHcCCeEEEeCCcH
Confidence 9999999999887654
No 375
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.81 E-value=72 Score=30.24 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=33.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA 52 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 52 (398)
..|+++...+.|=..-...||..+.++|++|.+++...+..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 33446655688999999999999999999999999987744
No 376
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=42.77 E-value=1.8e+02 Score=23.60 Aligned_cols=44 Identities=11% Similarity=0.017 Sum_probs=32.3
Q ss_pred HHHHHhhchhhccCC-ccEEEecCcch---hHHHHHHHhCCceEEEcC
Q 042709 88 PHKLMTEDPQADTEC-TACVIADISVG---WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~-pD~vi~D~~~~---~~~~~A~~lgiP~v~~~~ 131 (398)
...+...+.+..++. ||+|+.-.... .+..+|.++|.|++.-..
T Consensus 68 ~~~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 68 AEPYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 344555555555555 99999987765 689999999999987443
No 377
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=42.77 E-value=1.8e+02 Score=26.58 Aligned_cols=20 Identities=5% Similarity=-0.265 Sum_probs=15.9
Q ss_pred hHHHHHHHhCCceEEEcCCc
Q 042709 114 WALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 114 ~~~~~A~~lgiP~v~~~~~~ 133 (398)
....+|+.+++|++.+..+.
T Consensus 208 ~lA~~Ak~~~vPv~V~a~~~ 227 (301)
T TIGR00511 208 QLALAAREARVPFMVAAETY 227 (301)
T ss_pred HHHHHHHHhCCCEEEEcccc
Confidence 45788999999999876544
No 378
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.51 E-value=41 Score=30.52 Aligned_cols=54 Identities=19% Similarity=0.393 Sum_probs=38.4
Q ss_pred CCCcceEEecCCcchHHHHHh----cCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH
Q 042709 284 HPSIAWFLSHCGWNSTMEGLS----MGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND 359 (398)
Q Consensus 284 ~~~~~~~ItHgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~ 359 (398)
.+++ +|+=||=||++.+.+ +++|++.+-. - .+|.- ..++++++.+++.+++++.
T Consensus 64 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G------~lGFL------t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 64 SADM--VISIGGDGTFLRTATYVGNSNIPILGINT--------G------RLGFL------ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec--------C------CCCcc------cccCHHHHHHHHHHHHcCC
Confidence 4555 999999999999987 3678776521 1 12221 2357889999999999764
No 379
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.32 E-value=1.2e+02 Score=30.03 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccc--hHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEFI--HAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERE 86 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (398)
.++|++++.-+ .-.+++++.|. +-|-+|..+++... .+.+++.. . .+.+.. ...+
T Consensus 294 ~Gkrv~I~gd~-----~~a~~l~~~L~~ElG~~vv~~gt~~~~~~~~~~~~~-----------~--~~~~~~----~i~d 351 (511)
T TIGR01278 294 TGKRAFVFGDA-----THAVGMTKILARELGIHIVGAGTYCKYDADWVREQV-----------A--GYVDEV----LITD 351 (511)
T ss_pred cCCeEEEEcCc-----HHHHHHHHHHHHhCCCEEEecCCchhhhHHHHHHHH-----------H--hcCCCe----EEeC
Confidence 45777766542 34677888898 78999987766432 22232221 0 000000 0122
Q ss_pred CHHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcC
Q 042709 87 DPHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVP 131 (398)
Q Consensus 87 ~~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 131 (398)
|..++. +.+++. ||+||.+. ....+|+++|||++.++.
T Consensus 352 D~~ei~----~~i~~~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 352 DFQEVA----DAIAALEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred CHHHHH----HHHHhcCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 333333 223455 99999996 477889999999987664
No 380
>PRK08181 transposase; Validated
Probab=42.31 E-value=51 Score=29.47 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=36.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKII 55 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 55 (398)
+..++++..++.|=..=..++|.++.++|+.|.|++.......+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~ 150 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQ 150 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHH
Confidence 456888888888888888899999999999999998876665554
No 381
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=42.30 E-value=2e+02 Score=24.02 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=19.7
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCC
Q 042709 16 VIPFPALGHVAPLMKLATKIAEHG 39 (398)
Q Consensus 16 ~~~~~~~GH~~p~l~La~~L~~rG 39 (398)
++-.++.||..=|+.|-+.|.++=
T Consensus 42 lVvlGSGGHT~EMlrLl~~l~~~y 65 (211)
T KOG3339|consen 42 LVVLGSGGHTGEMLRLLEALQDLY 65 (211)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhc
Confidence 444567799999999999997763
No 382
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=42.15 E-value=42 Score=30.77 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=30.4
Q ss_pred CEEEEEcCCC---ccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 12 PHVLVIPFPA---LGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 12 ~~il~~~~~~---~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
|||+|+.-|- .-+.+-.+.|.++..+|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 4777777652 234456789999999999999999997654
No 383
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=42.13 E-value=1.9e+02 Score=26.79 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=57.2
Q ss_pred CEEEEEcCCCcc---CHH--HHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCe-EEEEcCCCCCCCCCCC
Q 042709 12 PHVLVIPFPALG---HVA--PLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQI-MLVSIPDGLDLQADER 85 (398)
Q Consensus 12 ~~il~~~~~~~G---H~~--p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (398)
.-|++.|..+.| ++. -+.+|++.|.++|++|.+++++.-.+..++..... ..+.. ....+. ..
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~---~~~~~~~~~~l~--------g~ 249 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAAL---NTEQQAWCRNLA--------GE 249 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhc---ccccccceeecc--------CC
Confidence 446666643222 222 47899999999999999998876655544331100 00000 011110 11
Q ss_pred CCHHHHHhhchhhccCCccEEEecCcchhHHHHHHHhCCceEEEcC
Q 042709 86 EDPHKLMTEDPQADTECTACVIADISVGWALEVAEAIGIARAAFVP 131 (398)
Q Consensus 86 ~~~~~~~~~~~~~~~~~pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 131 (398)
.++.++...+.. -|++|+.-. +..-+|..+|+|++.++.
T Consensus 250 ~sL~el~ali~~-----a~l~I~nDT--Gp~HlAaA~g~P~valfG 288 (348)
T PRK10916 250 TQLEQAVILIAA-----CKAIVTNDS--GLMHVAAALNRPLVALYG 288 (348)
T ss_pred CCHHHHHHHHHh-----CCEEEecCC--hHHHHHHHhCCCEEEEEC
Confidence 233333322221 567776543 578899999999998875
No 384
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=42.13 E-value=53 Score=28.83 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=30.4
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 12 PHVLVIPF-PALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 12 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
+.|++... |+-|=..-.-.||..|+++|++|..+=-.
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 44555544 79999999999999999999999988654
No 385
>PRK06988 putative formyltransferase; Provisional
Probab=41.88 E-value=2.1e+02 Score=26.21 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=23.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
|||+|+..+. -.+...+.|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 8999986654 2355667788899998877764
No 386
>PLN02929 NADH kinase
Probab=41.85 E-value=42 Score=30.51 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=42.5
Q ss_pred CCCCcceEEecCCcchHHHHHhc---CCceecccCcc------chhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHH
Q 042709 283 GHPSIAWFLSHCGWNSTMEGLSM---GVPFLCWPSFA------DQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVK 353 (398)
Q Consensus 283 ~~~~~~~~ItHgG~~s~~eal~~---GvP~v~~P~~~------DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~ 353 (398)
..+++ +|+-||=||+..+.+. ++|++.+=... .+..|..- +. .-+|.-- .++.+++.+++.
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~------~~~~~~~~~~L~ 132 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLC------AATAEDFEQVLD 132 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCccccc------cCCHHHHHHHHH
Confidence 34555 9999999999999654 68887764431 12222211 11 1244333 357899999999
Q ss_pred HHhcCH
Q 042709 354 ALLKND 359 (398)
Q Consensus 354 ~~l~~~ 359 (398)
+++++.
T Consensus 133 ~il~g~ 138 (301)
T PLN02929 133 DVLFGR 138 (301)
T ss_pred HHHcCC
Confidence 999764
No 387
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=41.64 E-value=2.4e+02 Score=27.98 Aligned_cols=92 Identities=13% Similarity=0.163 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccc--hHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEFI--HAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERE 86 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (398)
.++|++++.-+ .-.+++++.|. +-|-+|.+.++... .+.+++.... ..+.+.+ .+
T Consensus 304 ~Gkrv~I~gd~-----~~a~~l~~~L~~ELGm~vv~~g~~~~~~~~~~~~~~~~----~~~~~~i-------------~~ 361 (513)
T CHL00076 304 TGKKAVVFGDA-----THAASMTKILAREMGIRVSCAGTYCKHDAEWFKEQVQG----FCDEILI-------------TD 361 (513)
T ss_pred CCCEEEEEcCc-----hHHHHHHHHHHHhCCCEEEEecCcccchhHHHHHHHHH----hccCcEE-------------ec
Confidence 45777776533 34678888885 88999987655332 2222222100 0011111 12
Q ss_pred CHHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 87 DPHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 87 ~~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
|..+..+.+ ++. ||+||.+. +...+|+++|||++.++
T Consensus 362 D~~ei~~~I----~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 362 DHTEVGDMI----ARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred CHHHHHHHH----HhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 333333222 345 99999996 46777999999998765
No 388
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=41.43 E-value=1.2e+02 Score=24.15 Aligned_cols=91 Identities=13% Similarity=0.079 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchH---HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCC-c
Q 042709 28 LMKLATKIAEHGIDVTFVNTEFIHA---KIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTEC-T 103 (398)
Q Consensus 28 ~l~La~~L~~rGh~Vt~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p 103 (398)
...+.+.|.++|+.+.++|...... .++..+.. .-+...-..+.... ...+.. .+....+.+.-. -
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~------~~f~~i~~~~~~~~---~Kp~~~-~~~~~~~~~~~~p~ 151 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD------DYFDEIISSDDVGS---RKPDPD-AYRRALEKLGIPPE 151 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG------GGCSEEEEGGGSSS---STTSHH-HHHHHHHHHTSSGG
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccc------cccccccccchhhh---hhhHHH-HHHHHHHHcCCCcc
Confidence 5678889999999999999876442 22222211 01211111111111 122222 233333322224 6
Q ss_pred cEEEecCcchhHHHHHHHhCCceEEE
Q 042709 104 ACVIADISVGWALEVAEAIGIARAAF 129 (398)
Q Consensus 104 D~vi~D~~~~~~~~~A~~lgiP~v~~ 129 (398)
+++++|-.. .....|+..|+++|.+
T Consensus 152 ~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 152 EILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp GEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred eEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 777777666 8999999999999864
No 389
>PRK07004 replicative DNA helicase; Provisional
Probab=41.15 E-value=67 Score=31.32 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=35.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccchHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEFIHAKII 55 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v~ 55 (398)
-=+++..-|+.|=..-.+.+|..++ +.|+.|.|++.+-..+.+.
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~ 258 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLA 258 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 3356777799999999999999886 4699999999987666543
No 390
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=40.77 E-value=49 Score=28.09 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
+.||.+-..|+-|-.+-|+.=|+.|.++|.+|++..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 4678888889999999999999999999999999776543
No 391
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=40.54 E-value=71 Score=23.89 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=26.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFV 45 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 45 (398)
|++.||+++|..+.|--.-.-.+-+...++|.++.+-
T Consensus 1 m~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~ 37 (106)
T PRK10499 1 MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIE 37 (106)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEE
Confidence 5567899999888776555546666667788776653
No 392
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=40.53 E-value=22 Score=33.74 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=22.8
Q ss_pred CCccCHHHHH---HHHHHHHhCCCeEEEEeCcc
Q 042709 20 PALGHVAPLM---KLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 20 ~~~GH~~p~l---~La~~L~~rGh~Vt~~~~~~ 49 (398)
|..||++|++ .+++-++.+||+|.|++..+
T Consensus 14 lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtD 46 (391)
T PF09334_consen 14 LHLGHLYPYLAADVLARYLRLRGHDVLFVTGTD 46 (391)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CCCChhHHHHHHHHHHHHHhhcccceeeEEecc
Confidence 4679999776 46788888999999998754
No 393
>PRK10037 cell division protein; Provisional
Probab=40.43 E-value=52 Score=28.92 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=31.1
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 13 HVLVIPF-PALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 13 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
.|.++.. ++-|=..-.+.||..|+++|++|.++=...
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4556666 788999999999999999999999995544
No 394
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=40.39 E-value=1.8e+02 Score=27.50 Aligned_cols=96 Identities=18% Similarity=0.120 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
++.+++++..+ .....+++.|.+.|-+|..+......+...+..... . ...-.+ + ...+..
T Consensus 278 ~g~~~~i~~~~-----~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~~~~~--~-~~~~~~------~-----~~~d~~ 338 (399)
T cd00316 278 GGKKVAIFGDG-----DLLLALARFLLELGMEVVAAGTTFGHKADYERREEL--L-GEGTEV------V-----DDGDLE 338 (399)
T ss_pred cCCEEEEECCC-----cHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHh--c-CCCCEE------E-----eCCCHH
Confidence 46777665432 345566789999999988777644333221110000 0 000010 0 223344
Q ss_pred HHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcC
Q 042709 90 KLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVP 131 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 131 (398)
+..+.+ ++. ||++|.+.. ....++++|+|++.+..
T Consensus 339 ~~~~~~----~~~~pdl~ig~~~---~~~~~~~~~ip~~~~~~ 374 (399)
T cd00316 339 ELEELI----RELKPDLIIGGSK---GRYIAKKLGIPLVRIGF 374 (399)
T ss_pred HHHHHH----hhcCCCEEEECCc---HHHHHHHhCCCEEEcCC
Confidence 444333 455 999999965 67788889999986553
No 395
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=40.35 E-value=33 Score=33.39 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=25.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|||+++-.+-.| ++-|.+|+++||+||++=...
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEeccC
Confidence 577777665433 788999999999999986644
No 396
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=40.31 E-value=1.2e+02 Score=24.23 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=20.7
Q ss_pred EEecCCcc------hHHHHHhcCCceecccC
Q 042709 290 FLSHCGWN------STMEGLSMGVPFLCWPS 314 (398)
Q Consensus 290 ~ItHgG~~------s~~eal~~GvP~v~~P~ 314 (398)
+++|+|-| .+.+|...++|+|++.-
T Consensus 63 ~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 63 VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 88887755 77889999999999853
No 397
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=40.30 E-value=37 Score=30.49 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 30 KLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 30 ~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
.+|..|.+.||+|++++-....+.+.+.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~ 32 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQE 32 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHC
Confidence 4688999999999999986445555554
No 398
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.21 E-value=35 Score=30.66 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=34.6
Q ss_pred ceEEecCCcchHHHHHhc---CCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH
Q 042709 288 AWFLSHCGWNSTMEGLSM---GVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND 359 (398)
Q Consensus 288 ~~~ItHgG~~s~~eal~~---GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~ 359 (398)
+++|.-||-||+.++++. ++|++.++... + |. + ..++++++.+++.+++++.
T Consensus 59 d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GF-l-----~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 59 DFIIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GF-L-----TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred CEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Cc-c-----ccCCHHHHHHHHHHHHcCC
Confidence 349999999999999853 45776665311 1 11 1 2346788888888888653
No 399
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=40.20 E-value=49 Score=28.12 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=28.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
++..+|+++-.+..| ...++.|.+.|++|+++++..
T Consensus 8 l~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 8 LSNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred cCCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCCC
Confidence 467889998776544 667899999999999998643
No 400
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.19 E-value=47 Score=30.11 Aligned_cols=55 Identities=5% Similarity=0.103 Sum_probs=37.9
Q ss_pred CCCCcceEEecCCcchHHHHHh----cCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcC
Q 042709 283 GHPSIAWFLSHCGWNSTMEGLS----MGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKN 358 (398)
Q Consensus 283 ~~~~~~~~ItHgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~ 358 (398)
..+++ +|+=||=||+..+.+ +++|++.+-. - .+|.. ..++++++.+++++++++
T Consensus 62 ~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~--------G------~lGFl------~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 62 QQADL--AIVVGGDGNMLGAARVLARYDIKVIGINR--------G------NLGFL------TDLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEEC--------C------CCCcc------cccCHHHHHHHHHHHHcC
Confidence 34555 999999999999975 3677766521 0 12221 235688999999999876
Q ss_pred H
Q 042709 359 D 359 (398)
Q Consensus 359 ~ 359 (398)
.
T Consensus 120 ~ 120 (292)
T PRK03378 120 H 120 (292)
T ss_pred C
Confidence 4
No 401
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=40.11 E-value=38 Score=22.87 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCeEEEEeCcc
Q 042709 29 MKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 29 l~La~~L~~rGh~Vt~~~~~~ 49 (398)
+..|..|+++|++|+++=..+
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567899999999999976543
No 402
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.10 E-value=58 Score=26.26 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCC-------CccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 9 CRQPHVLVIPFP-------ALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 9 m~~~~il~~~~~-------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
-+++|++++-.| +..|+.-+++-+++|+.+|.+.+++.+-+
T Consensus 41 ~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn 88 (171)
T KOG0541|consen 41 FKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN 88 (171)
T ss_pred cCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC
Confidence 356777776655 56899999999999999998888877644
No 403
>PRK06526 transposase; Provisional
Probab=39.88 E-value=36 Score=30.16 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=37.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHH
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKII 55 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 55 (398)
+.+++++..++.|=..=..+|+.++.++|+.|.|++...+.+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~ 142 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA 142 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHH
Confidence 567888888888988889999999999999999988776665554
No 404
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=39.74 E-value=1.3e+02 Score=26.70 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=64.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhh--cc--cc-cCCCCCeEEEEcCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASM--QG--KA-ENSSSQIMLVSIPDGLDLQADE 84 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~--~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (398)
+..+|.+.-.|+.|--.=.=+|++.|.++||+|-+++-......-.-+. .. .. -...+++=+.+.+ .
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~a--------t 99 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMA--------T 99 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE----------
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecC--------c
Confidence 4456668889999999999999999999999999998765443211110 00 00 0112344444443 3
Q ss_pred CCCHHHHHhhchhhc---cCC-ccEEEecCcch--hHHHHHHHhCCceEEEcCC
Q 042709 85 REDPHKLMTEDPQAD---TEC-TACVIADISVG--WALEVAEAIGIARAAFVPF 132 (398)
Q Consensus 85 ~~~~~~~~~~~~~~~---~~~-pD~vi~D~~~~--~~~~~A~~lgiP~v~~~~~ 132 (398)
...+-.+.....+.+ +.. +|+||.+.... .-..+++..+.-++.+.|.
T Consensus 100 RG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 100 RGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG 153 (266)
T ss_dssp -SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred CCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence 333434444433333 555 99999998765 4566777666666665543
No 405
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=39.53 E-value=1.7e+02 Score=28.56 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCcc-chHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEF-IHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERED 87 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (398)
+++|++++..+. -...+++.|. +-|-+|..+++.. ..+..++.... ..++.-. + ...+
T Consensus 324 ~GkrvaI~~~~~-----~~~~l~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~----~~~~~~~--i---------~d~~ 383 (457)
T TIGR01284 324 RGKKVWVWSGGP-----KLWHWPRPLEDELGMEVVAVSTKFGHEDDYEKIIAR----VREGTVI--I---------DDPN 383 (457)
T ss_pred CCCEEEEECCCc-----HHHHHHHHHHHhCCCEEEEEEEEeCCHHHHHHHHHh----cCCCeEE--E---------eCCC
Confidence 467888765542 3478899997 6999998876643 23332222100 0001000 0 1112
Q ss_pred HHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 88 PHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
..++.+.+ +.. ||++|.... ...+|+++|||++.+.
T Consensus 384 ~~e~~~~i----~~~~pDllig~~~---~~~~a~k~gip~~~~~ 420 (457)
T TIGR01284 384 ELELEEII----EKYKPDIILTGIR---EGELAKKLGVPYINIH 420 (457)
T ss_pred HHHHHHHH----HhcCCCEEEecCC---cchhhhhcCCCEEEcc
Confidence 22333222 344 999998864 6789999999999863
No 406
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=39.50 E-value=68 Score=27.79 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=29.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCe-EEEEe
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGID-VTFVN 46 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~-Vt~~~ 46 (398)
.-|+|+..|..|-......|.++|+++||+ ++.+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii 37 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRII 37 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEe
Confidence 457888899999999999999999999976 43333
No 407
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.46 E-value=50 Score=29.27 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=36.5
Q ss_pred CcceEEecCCcchHHHHHh-cCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH
Q 042709 286 SIAWFLSHCGWNSTMEGLS-MGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND 359 (398)
Q Consensus 286 ~~~~~ItHgG~~s~~eal~-~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~ 359 (398)
+++++|+=||=||+..|++ +++|++.+- .- .+|.. ..++.+++.+++.+++++.
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~~~Pilgin--------~G------~lGfl------~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKVGTPLVGFK--------AG------RLGFL------SSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCEEEEe--------CC------CCccc------cccCHHHHHHHHHHHHcCC
Confidence 3344999999999999987 567766542 11 12222 2356788888998888753
No 408
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=39.45 E-value=2.5e+02 Score=30.23 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH----HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA----KIIASMQGKAENSSSQIMLVSIPDGLDLQADER 85 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (398)
+++|++++..+. -...+++.|.+-|-+|..+++..... .+.+.. ..+..+ + ..
T Consensus 319 ~GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~~~~d~~~~~~~~-------~~~~~v--i---------~~ 375 (917)
T PRK14477 319 EGKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNSTLEDFARMKALM-------HKDAHI--I---------ED 375 (917)
T ss_pred cCCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHhc-------CCCCEE--E---------EC
Confidence 578899887553 35678999999999998876653322 111110 001111 0 22
Q ss_pred CCHHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcC
Q 042709 86 EDPHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVP 131 (398)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 131 (398)
.++.++.+.+ ++. ||++|.... ...+|+++|||++....
T Consensus 376 ~d~~el~~~i----~~~~pDLlig~~~---~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 376 TSTAGLLRVM----REKMPDLIVAGGK---TKFLALKTRTPFLDINH 415 (917)
T ss_pred CCHHHHHHHH----HhcCCCEEEecCc---hhhHHHHcCCCeEEccC
Confidence 2344444333 344 999999754 67899999999997653
No 409
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=39.20 E-value=1.1e+02 Score=25.00 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=23.7
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCcc-chHHHHHh
Q 042709 21 ALGHVAPLMKLATKIAEHGIDVTFVNTEF-IHAKIIAS 57 (398)
Q Consensus 21 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~v~~~ 57 (398)
+.|+.. .|++.|+++|.+|..++.+. ....+.+.
T Consensus 114 gD~DF~---~Lv~~lre~G~~V~v~g~~~~ts~~L~~a 148 (160)
T TIGR00288 114 RDADFL---PVINKAKENGKETIVIGAEPGFSTALQNS 148 (160)
T ss_pred ccHhHH---HHHHHHHHCCCEEEEEeCCCCChHHHHHh
Confidence 445654 57889999999999999664 44344443
No 410
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=39.12 E-value=47 Score=29.97 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=27.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
+||.|+-.+..| ..+|+.|.++||+|+++.-..
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~ 33 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTP 33 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCCh
Confidence 478888887666 478999999999999988653
No 411
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=38.97 E-value=34 Score=28.66 Aligned_cols=56 Identities=27% Similarity=0.319 Sum_probs=35.4
Q ss_pred CEEEEEcC---CC-ccCHHH-HHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcC
Q 042709 12 PHVLVIPF---PA-LGHVAP-LMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIP 75 (398)
Q Consensus 12 ~~il~~~~---~~-~GH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 75 (398)
.||.++.. |+ +|=+-- .=.|+..|+++||+|++++.....+.-... -.|++...+|
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~--------y~gv~l~~i~ 62 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE--------YNGVRLVYIP 62 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcc--------cCCeEEEEeC
Confidence 56666654 22 344443 446888999999999999886554322211 2477777776
No 412
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=38.95 E-value=1.5e+02 Score=26.60 Aligned_cols=31 Identities=13% Similarity=-0.158 Sum_probs=20.8
Q ss_pred ccEEEecCcc------hhHHHHHHHhCCceEEEcCCc
Q 042709 103 TACVIADISV------GWALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 103 pD~vi~D~~~------~~~~~~A~~lgiP~v~~~~~~ 133 (398)
.|.|..|... +....+|+.+|+|++....+.
T Consensus 185 AD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~ 221 (275)
T PRK08335 185 ADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETF 221 (275)
T ss_pred ccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECccc
Confidence 5555555432 234688999999999876544
No 413
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=38.73 E-value=40 Score=25.11 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccchHHHHH
Q 042709 26 APLMKLATKIAEHGIDVTFVNTEFIHAKIIA 56 (398)
Q Consensus 26 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 56 (398)
+|.+.|++.|.++|.+|.++=|--.......
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~ 47 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKE 47 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHh
Confidence 7999999999999999998877665555544
No 414
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=38.70 E-value=2.2e+02 Score=24.82 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=57.1
Q ss_pred hhcCCCC-cEEEEEeCCcccCCHHHHHHhhccceecccCcccccCCCCcceEEecCCcchHHHHHh-cCCceecccCccc
Q 042709 240 RDKQAIG-SVTYVAFGRFSILGQEQLEQLALGKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLS-MGVPFLCWPSFAD 317 (398)
Q Consensus 240 l~~~~~~-~vVyvs~Gs~~~~~~~~~~~~~~~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~-~GvP~v~~P~~~D 317 (398)
||.+.++ -+-...+||...+.+++.++...-++..|=|+.-|.-.|+. .--|-...-|.+. .|+|.+++.-..-
T Consensus 23 lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~----a~PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 23 LDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNP----AAPGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred HHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCC----CCCCchHHHHHHHhcCCCEEEEcCCCc
Confidence 4444433 25566789989999998886655556678787776655554 1124445555554 5899999854322
Q ss_pred hhhHHHhhccceeeEEEecC
Q 042709 318 QHHNRNYICDVWKIGVQLLP 337 (398)
Q Consensus 318 Q~~na~~~~~~~g~g~~l~~ 337 (398)
.-.- ..+++ .|.|.-+-+
T Consensus 99 ~K~~-d~l~~-~g~GYIivk 116 (277)
T PRK00994 99 KKVK-DAMEE-QGLGYIIVK 116 (277)
T ss_pred cchH-HHHHh-cCCcEEEEe
Confidence 2111 45566 488877644
No 415
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=38.61 E-value=1.1e+02 Score=27.56 Aligned_cols=31 Identities=10% Similarity=-0.057 Sum_probs=18.5
Q ss_pred ccEEEecC------cchhHHHHHHHhCCceEEEcCCc
Q 042709 103 TACVIADI------SVGWALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 103 pD~vi~D~------~~~~~~~~A~~lgiP~v~~~~~~ 133 (398)
.|.|+.|. -+.....+|+.+++|++.+..+.
T Consensus 184 ad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~ 220 (282)
T PF01008_consen 184 ADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESY 220 (282)
T ss_dssp -SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GG
T ss_pred eeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccc
Confidence 45555554 23346789999999999976543
No 416
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=38.56 E-value=85 Score=24.47 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=35.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHH
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKI 54 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 54 (398)
+|++.+..+.+|-.----++..|...|++|+..+.....+.+
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~ 42 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEF 42 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 478888899999999999999999999999998876554443
No 417
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=38.52 E-value=82 Score=26.21 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|+++-|++.-.++.|=..-.-.|++.|..+|+.|.+...+.
T Consensus 1 ~~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~ 41 (195)
T TIGR00041 1 MRGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPG 41 (195)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 55677888888999999999999999999999998776554
No 418
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.41 E-value=4.4e+02 Score=27.54 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=32.2
Q ss_pred CCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 11 QPHVLVIPF--PALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 11 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
+.|+++++. |+.|=..-.+.||..|+..|++|.++-....
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 456665554 5788899999999999999999999976543
No 419
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=38.20 E-value=58 Score=29.52 Aligned_cols=41 Identities=12% Similarity=-0.022 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCC-CccCHH---HHHHHHHHHHhCCCeEEEEeCcc
Q 042709 9 CRQPHVLVIPFP-ALGHVA---PLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 9 m~~~~il~~~~~-~~GH~~---p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|.+++|++++.+ +.=|-. -...+.++|.++||+|.++....
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~ 46 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE 46 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc
Confidence 445689877753 222333 56889999999999999986543
No 420
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=38.13 E-value=1.4e+02 Score=26.51 Aligned_cols=86 Identities=13% Similarity=0.104 Sum_probs=54.6
Q ss_pred cCCCCEEEEEcCCCccCHHH-HHHHHHHHHhCCCeEEEEeCc--cchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCC
Q 042709 8 SCRQPHVLVIPFPALGHVAP-LMKLATKIAEHGIDVTFVNTE--FIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADE 84 (398)
Q Consensus 8 ~m~~~~il~~~~~~~GH~~p-~l~La~~L~~rGh~Vt~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (398)
+-++.||..+- |+.+ +--|++.|++-|-+|.+.++. +..+.+.+.... .|+..... .
T Consensus 40 Pl~G~rIa~cL-----Hle~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~------~Gi~V~A~---------~ 99 (268)
T PF05221_consen 40 PLKGARIAGCL-----HLEAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAE------EGIPVFAW---------K 99 (268)
T ss_dssp TTTTEEEEEES-------SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHH------TTEEEEE----------T
T ss_pred CCCCCEEEEEE-----echHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhcc------CCceEEEe---------C
Confidence 44678888765 4444 667899999999999999874 566666555432 37888776 4
Q ss_pred CCCHHHHHhhchhhc--c-CC-ccEEEecCcch
Q 042709 85 REDPHKLMTEDPQAD--T-EC-TACVIADISVG 113 (398)
Q Consensus 85 ~~~~~~~~~~~~~~~--~-~~-pD~vi~D~~~~ 113 (398)
..+..++...+...+ . +. ||+||=|..-.
T Consensus 100 get~eey~~~i~~~L~~~~~~~P~~iiDDG~Dl 132 (268)
T PF05221_consen 100 GETDEEYWWCIEKALSWEDDHGPNLIIDDGGDL 132 (268)
T ss_dssp T--HHHHHHHHHHCHSESTTCE-SEEEESSSHH
T ss_pred CCCHHHHHHHHHHHhcCCCCCCcceeecchHHH
Confidence 445556666665555 2 46 99999996643
No 421
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=38.03 E-value=1.9e+02 Score=25.93 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=30.1
Q ss_pred HhhchhhccCC-ccEEEecCcch--hHHHHHHHhCCceEEEcC
Q 042709 92 MTEDPQADTEC-TACVIADISVG--WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 92 ~~~~~~~~~~~-pD~vi~D~~~~--~~~~~A~~lgiP~v~~~~ 131 (398)
+..+.+.+++. ..+|+++..+. .+..+|+..|+|.+.+.+
T Consensus 209 l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 209 LAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 34444445666 99999999876 567899999999987654
No 422
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=38.02 E-value=80 Score=25.59 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
++.+|+++. .+|-+..-+++..|..-|.+|++++++...
T Consensus 1 ~gl~i~~vG---D~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~ 39 (158)
T PF00185_consen 1 KGLKIAYVG---DGHNRVAHSLIELLAKFGMEVVLIAPEGLR 39 (158)
T ss_dssp TTEEEEEES---STTSHHHHHHHHHHHHTTSEEEEESSGGGG
T ss_pred CCCEEEEEC---CCCChHHHHHHHHHHHcCCEEEEECCCccc
Confidence 456777776 388999999999999999999999998843
No 423
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=37.99 E-value=43 Score=30.67 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=26.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
|||+|+-.+..| ..+|..|+++||+|+++...
T Consensus 2 mkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 789999887766 45788899999999998764
No 424
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.96 E-value=49 Score=30.07 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCCcceEEecCCcchHHHHHh----cCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH
Q 042709 284 HPSIAWFLSHCGWNSTMEGLS----MGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND 359 (398)
Q Consensus 284 ~~~~~~~ItHgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~ 359 (398)
.+++ +|+=||=||++.+.+ .++|++.+- .- .+|.-. .++++++.+++.++++++
T Consensus 68 ~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN--------~G------~lGFL~------~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 68 YCDL--VAVLGGDGTFLSVAREIAPRAVPIIGIN--------QG------HLGFLT------QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCEEEEe--------cC------CCeEee------ccCHHHHHHHHHHHHcCC
Confidence 4555 999999999999975 377887762 11 133333 357889999999999764
No 425
>PRK12377 putative replication protein; Provisional
Probab=37.84 E-value=63 Score=28.49 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=38.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
..++|...++.|=..=..++|+.|.++|+.|.|++.+.....+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH
Confidence 4577888888899999999999999999999999888777666543
No 426
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=37.70 E-value=3e+02 Score=27.74 Aligned_cols=243 Identities=12% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HhhchhhccCC-ccEEEecCcch-hHHHHHHHhCCceEEEcCCcHHHHHHHhhh----hhhhhhccCCCCCccccccccc
Q 042709 92 MTEDPQADTEC-TACVIADISVG-WALEVAEAIGIARAAFVPFGPGSLALSLHI----PKLLDAAIIDPNGFAVLNYGLI 165 (398)
Q Consensus 92 ~~~~~~~~~~~-pD~vi~D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 165 (398)
+..+.+.+.++ +|+=|++.+.. .+.-+|..=--|++.++++..----..... .+++.-..++..|+--.....+
T Consensus 349 L~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH 428 (627)
T COG1154 349 LVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTH 428 (627)
T ss_pred hHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEEecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCcc
Q ss_pred cccCCCCCCccCccCcCCCCCCchhhHHHHHHHHHHHhhhccceEEeccccccccccccCCCceecCCcchHHhhhcCCC
Q 042709 166 SLSNEIPALNRNEYTWSFPTEPNIQKIFFGSTCATVQAFKISKWVLNNSVYELDSPACDLIPSVLPFDSTCLSWRDKQAI 245 (398)
Q Consensus 166 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~v~~~~~~~l~~~~~ 245 (398)
.-+-.+..+.. +|.....-+.....++..+......-..+-.+-..--...+.+..+.+..+ ++.+|.-.++.
T Consensus 429 ~G~fDls~l~~--iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~~~~~-----~~Gk~~i~~~G 501 (627)
T COG1154 429 QGLFDLSFLRC--IPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPELEPL-----EIGKGELLKEG 501 (627)
T ss_pred ccHHHHHHHhc--CCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccccccc-----cccceEEEecC
Q ss_pred CcEEEEEeCCcccCCHHHHHHhhc---------cceecccCcc---cccCCCCcceEEe------cCCcchHHHHHhcC-
Q 042709 246 GSVTYVAFGRFSILGQEQLEQLAL---------GKIVEWAPQE---NDLGHPSIAWFLS------HCGWNSTMEGLSMG- 306 (398)
Q Consensus 246 ~~vVyvs~Gs~~~~~~~~~~~~~~---------~~v~~~vpq~---~lL~~~~~~~~It------HgG~~s~~eal~~G- 306 (398)
..++.++||++...-.+..+++.. .+.+.=++.. .+.++-+. +|| +||.||-.--...-
T Consensus 502 ~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h~~--~vtlEe~~~~GG~Gs~v~efl~~~ 579 (627)
T COG1154 502 EKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDL--VVTLEENVVDGGFGSAVLEFLAAH 579 (627)
T ss_pred CcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhcCe--EEEEecCcccccHHHHHHHHHHhc
Q ss_pred ---CceecccC---ccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHh
Q 042709 307 ---VPFLCWPS---FADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALL 356 (398)
Q Consensus 307 ---vP~v~~P~---~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l 356 (398)
+|++.+.+ +.||-.-....++ -.++++.|.+.|...+
T Consensus 580 ~~~~~v~~lglpd~fi~hg~~~el~~~-------------~gLd~~~i~~~i~~~l 622 (627)
T COG1154 580 GILVPVLNLGLPDEFIDHGSPEELLAE-------------LGLDAEGIARRILEWL 622 (627)
T ss_pred CCCCceEEecCChHhhccCCHHHHHHH-------------cCCCHHHHHHHHHHHH
No 427
>PRK04148 hypothetical protein; Provisional
Probab=37.62 E-value=71 Score=25.13 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
++++|+.+..+ .| ..+|..|++.||+|+.+=...
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCH
Confidence 45789888887 33 346888999999999876543
No 428
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=37.57 E-value=1e+02 Score=23.43 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIA 56 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 56 (398)
++-.++++-. ..|+...++.+++.++++|..|..+|........+.
T Consensus 52 ~~~d~vi~is-~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 52 DPDDLVIIIS-YSGETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp STTEEEEEEE-SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred cccceeEeee-ccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 3444444333 668999999999999999999999998766555443
No 429
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=37.52 E-value=2.3e+02 Score=28.10 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCcc-chHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEF-IHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERED 87 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (398)
.++|++++..|. -...+++.|. +-|-+|+.+++.. ..+..++.... . ..+... ++ +..
T Consensus 327 ~GKrvai~~gg~-----~~~~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~---~-~~~~~~--i~--------D~~- 386 (513)
T TIGR01861 327 KGKKVCLWPGGS-----KLWHWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVAR---C-GEGALA--ID--------DPN- 386 (513)
T ss_pred CCCEEEEECCch-----HHHHHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHh---C-CCCcEE--ec--------CCC-
Confidence 578888887753 4667888888 6999999887754 23322222100 0 001000 10 111
Q ss_pred HHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcC
Q 042709 88 PHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVP 131 (398)
Q Consensus 88 ~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 131 (398)
..+..+ .++.. ||++|.... +..+|+++|||++....
T Consensus 387 ~~e~~~----~l~~~~~Dllig~s~---~~~~A~k~gIP~ld~~~ 424 (513)
T TIGR01861 387 ELEGLE----AMEMLKPDIILTGKR---PGEVSKKMRVPYLNAHA 424 (513)
T ss_pred HHHHHH----HHHhcCCCEEEecCc---cchhHhhcCCCEEEccC
Confidence 111122 22345 999999876 55889999999987543
No 430
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=37.50 E-value=1.4e+02 Score=26.49 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 042709 29 MKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 29 l~La~~L~~rGh~Vt~~~~ 47 (398)
--||+.|.++|++|...++
T Consensus 24 ~~la~~L~~~G~~v~~~~~ 42 (255)
T COG1058 24 AFLADELTELGVDLARITT 42 (255)
T ss_pred HHHHHHHHhcCceEEEEEe
Confidence 3478888888988877665
No 431
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=37.40 E-value=64 Score=30.84 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=32.3
Q ss_pred CCCEEEEEc-C-CCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 10 RQPHVLVIP-F-PALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 10 ~~~~il~~~-~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
++++|+.+. . |+.|=..-.+.||..|+.+|++|.++=...
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 455665444 4 789999999999999999999999986544
No 432
>PRK08309 short chain dehydrogenase; Provisional
Probab=37.34 E-value=2.4e+02 Score=23.32 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhcc-CC-ccEE
Q 042709 29 MKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADT-EC-TACV 106 (398)
Q Consensus 29 l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-pD~v 106 (398)
.++++.|.++|++|++.+-.. +......... .....+.+... +-.+.......+...++ .. +|.+
T Consensus 13 g~la~~L~~~G~~V~v~~R~~--~~~~~l~~~l--~~~~~i~~~~~---------Dv~d~~sv~~~i~~~l~~~g~id~l 79 (177)
T PRK08309 13 KRVSLWLCEKGFHVSVIARRE--VKLENVKRES--TTPESITPLPL---------DYHDDDALKLAIKSTIEKNGPFDLA 79 (177)
T ss_pred HHHHHHHHHCcCEEEEEECCH--HHHHHHHHHh--hcCCcEEEEEc---------cCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 469999999999999886432 2222111000 00112333222 11222222222222232 23 7888
Q ss_pred EecCcch---hHHHHHHHhCCc-----eEEEcCCcH
Q 042709 107 IADISVG---WALEVAEAIGIA-----RAAFVPFGP 134 (398)
Q Consensus 107 i~D~~~~---~~~~~A~~lgiP-----~v~~~~~~~ 134 (398)
+.-.... ....+|+..|+. .+.+.-+.+
T Consensus 80 v~~vh~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~~ 115 (177)
T PRK08309 80 VAWIHSSAKDALSVVCRELDGSSETYRLFHVLGSAA 115 (177)
T ss_pred EEeccccchhhHHHHHHHHccCCCCceEEEEeCCcC
Confidence 8777655 457888899999 555554443
No 433
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=37.33 E-value=2.2e+02 Score=23.79 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchH--H-HHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCC-c
Q 042709 28 LMKLATKIAEHGIDVTFVNTEFIHA--K-IIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTEC-T 103 (398)
Q Consensus 28 ~l~La~~L~~rGh~Vt~~~~~~~~~--~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p 103 (398)
...+.+.|.++|+.+.++|...... . ++..+.. .-+...--.+.... ...++..+...+ +.+.-. -
T Consensus 90 ~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~------~~f~~~~~~~~~~~---~Kp~p~~~~~~~-~~~~~~~~ 159 (213)
T TIGR01449 90 VEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA------KYFSVLIGGDSLAQ---RKPHPDPLLLAA-ERLGVAPQ 159 (213)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH------hhCcEEEecCCCCC---CCCChHHHHHHH-HHcCCChh
Confidence 5667788999999999999864321 1 2222100 01111111111111 122222232222 222223 3
Q ss_pred cEEEecCcchhHHHHHHHhCCceEEEcCC
Q 042709 104 ACVIADISVGWALEVAEAIGIARAAFVPF 132 (398)
Q Consensus 104 D~vi~D~~~~~~~~~A~~lgiP~v~~~~~ 132 (398)
++++.+-. ......|+..|++++.+..+
T Consensus 160 ~~~~igDs-~~d~~aa~~aG~~~i~v~~g 187 (213)
T TIGR01449 160 QMVYVGDS-RVDIQAARAAGCPSVLLTYG 187 (213)
T ss_pred HeEEeCCC-HHHHHHHHHCCCeEEEEccC
Confidence 34444433 47999999999999987543
No 434
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=37.25 E-value=58 Score=27.20 Aligned_cols=33 Identities=33% Similarity=0.367 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|||.++-. ||+ =+.+|..|+++||+|+-+-...
T Consensus 1 M~I~ViGl---Gyv--Gl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGL---GYV--GLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECC---Ccc--hHHHHHHHHhCCCEEEEEeCCh
Confidence 57777744 433 3778999999999999876644
No 435
>PRK07952 DNA replication protein DnaC; Validated
Probab=37.00 E-value=69 Score=28.19 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=37.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 13 HVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 13 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
-+++...++.|=..=..++|..|.++|+.|.|++...+...+...
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~ 145 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDT 145 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHH
Confidence 467777788899999999999999999999999887777666543
No 436
>PRK10125 putative glycosyl transferase; Provisional
Probab=36.97 E-value=59 Score=31.05 Aligned_cols=59 Identities=19% Similarity=0.068 Sum_probs=38.8
Q ss_pred ccCCCCcceEEec----CCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHH
Q 042709 281 DLGHPSIAWFLSH----CGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINV 352 (398)
Q Consensus 281 lL~~~~~~~~ItH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai 352 (398)
+++.+++ ||.- |-..++.||+++|+|+|+-...+ ....+.+ +-|..++. -+.++|.+++
T Consensus 303 ~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 303 ALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred HHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-----CCHHHHHhcc
Confidence 4444565 7653 44568999999999999976543 3333333 56888854 3677887654
No 437
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=36.88 E-value=54 Score=30.14 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=29.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
++|.++-.++.| .+||+.|++.||+|++.+...
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 789999988888 589999999999999998753
No 438
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.83 E-value=2.3e+02 Score=25.39 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
+.+++++..++.|=..-+..|+..+..+|+.|.+++...+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 36888888888898888889999999999999999987654
No 439
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=36.61 E-value=3.8e+02 Score=25.76 Aligned_cols=94 Identities=11% Similarity=0.008 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc-hHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI-HAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
+++|++++..+. +... +++.|.+-|-+|...++... .....+... ...++.. -+ ...+.
T Consensus 299 ~Gkrv~i~~g~~--~~~~---~~~~l~elGmevv~~g~~~~~~~~~~~~~~----~~~~~~~--i~---------~~~d~ 358 (421)
T cd01976 299 EGKTVMLYVGGL--RPRH---YIGAYEDLGMEVVGTGYEFAHRDDYERTEV----IPKEGTL--LY---------DDVTH 358 (421)
T ss_pred CCCEEEEECCCC--cHHH---HHHHHHHCCCEEEEEEeecCCHHHHhhHHh----hcCCceE--EE---------cCCCH
Confidence 578888776432 3333 33577789999998765311 111111110 0000000 00 22334
Q ss_pred HHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 89 HKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 89 ~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
.++.+.+ ++. ||++|.... ...+|+++|||++.+.
T Consensus 359 ~e~~~~i----~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFV----KRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHH----HHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 4444333 344 999999976 7778999999998765
No 440
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=36.57 E-value=2.7e+02 Score=27.56 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCccchHHHHHhhcccc----c-CCCCCeEEEEcCCCCCCCC-C
Q 042709 11 QPHVLVIPFPALGHVAPLMKLATKIAEH-GIDVTFVNTEFIHAKIIASMQGKA----E-NSSSQIMLVSIPDGLDLQA-D 83 (398)
Q Consensus 11 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~-~ 83 (398)
+.-+++...|+.|...-.+.++..-+++ |..|.|++.+...+.+.+...... . .....+.+........... .
T Consensus 31 Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~~~~ 110 (509)
T PRK09302 31 GRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEEA 110 (509)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccccccc
Confidence 4557788889999999999998776666 999999999988776655532110 0 0001233333221110000 0
Q ss_pred CCCCHHHHHhhchhhccCC-ccEEEecCcch
Q 042709 84 EREDPHKLMTEDPQADTEC-TACVIADISVG 113 (398)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-pD~vi~D~~~~ 113 (398)
...+...++..+.+..+.. +|.||.|....
T Consensus 111 ~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 111 GEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred ccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 1224455566666555666 99999999874
No 441
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=36.42 E-value=85 Score=27.03 Aligned_cols=38 Identities=8% Similarity=0.073 Sum_probs=27.5
Q ss_pred CEEEEEcCC----CccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPFP----ALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~~----~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
+||+++..+ ......=++.--..|.+.|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 478876641 12345556777889999999999999854
No 442
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=36.41 E-value=1.1e+02 Score=23.72 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=27.1
Q ss_pred EEE-EEcCCCccCHHH--HHHHHHHHHhCC-CeEEEEeCccc
Q 042709 13 HVL-VIPFPALGHVAP--LMKLATKIAEHG-IDVTFVNTEFI 50 (398)
Q Consensus 13 ~il-~~~~~~~GH~~p--~l~La~~L~~rG-h~Vt~~~~~~~ 50 (398)
|+. +++.|.+|+-+- .+.+|++|.+.| +.|.++-..+.
T Consensus 2 ~~~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFly~Dg 43 (126)
T COG1553 2 KYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFLYQDG 43 (126)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEEeecc
Confidence 444 667788998766 556699999996 67777665443
No 443
>smart00096 UTG Uteroglobin.
Probab=36.25 E-value=1.4e+02 Score=20.40 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Q 042709 344 TRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVLR 397 (398)
Q Consensus 344 ~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 397 (398)
|+++-+..+...-.|+++.+++..++.-.-.- ..-....+-++++.+..++
T Consensus 17 t~~~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L---~~~~k~~i~~ll~kI~~s~ 67 (69)
T smart00096 17 TPSSYEASLKQFKPDPDMLEAGRQLKKLVDTL---PQETRENILKLTEKIYTSP 67 (69)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCC
Confidence 77888899999888999999998888876542 2223566778888777653
No 444
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=36.04 E-value=55 Score=22.69 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCcc
Q 042709 27 PLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 27 p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
.-+.+|..|+++|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45899999999999999998754
No 445
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=36.01 E-value=86 Score=24.70 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=34.0
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 16 VIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 16 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
++..+..--++|..-++...+.+|++|+++.+--....+++.
T Consensus 8 Il~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~K~ 49 (137)
T COG2210 8 ILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALRKE 49 (137)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhhcc
Confidence 555577788999999999999999999999986655555543
No 446
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=35.68 E-value=80 Score=30.12 Aligned_cols=42 Identities=26% Similarity=0.251 Sum_probs=29.3
Q ss_pred cCCCCEEEEEcCCCccCH------------HHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 8 SCRQPHVLVIPFPALGHV------------APLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 8 ~m~~~~il~~~~~~~GH~------------~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
.|++++|++...|+.=.+ .--.++|++|.++|++|+++..+.
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence 467778777776442111 124678999999999999987644
No 447
>PRK07236 hypothetical protein; Provisional
Probab=35.67 E-value=45 Score=31.51 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=28.7
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 8 SCRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 8 ~m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
.|+.++|+++-.+-. =+.+|..|+++|++|+++=-
T Consensus 3 ~~~~~~ViIVGaG~a-----Gl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 3 HMSGPRAVVIGGSLG-----GLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCCeEEEECCCHH-----HHHHHHHHHhCCCCEEEEec
Confidence 377889999987643 37899999999999999864
No 448
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=35.67 E-value=45 Score=26.29 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 042709 345 RQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIK 394 (398)
Q Consensus 345 ~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (398)
++++.+.-.+.|.|+++++.-..=+..|.+. .|-+..+|++.++...
T Consensus 2 Re~li~~A~~FL~~p~V~~sp~~~k~~FL~s---KGLt~~EI~~al~~a~ 48 (136)
T PF04695_consen 2 REDLIEQAVKFLQDPKVRNSPLEKKIAFLES---KGLTEEEIDEALGRAG 48 (136)
T ss_dssp HHHHHHHHHHHHCTTTCCCS-HHHHHHHHHH---CT--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCcccccCCHHHHHHHHHc---CCCCHHHHHHHHHhcC
Confidence 4555555558888888777776666777765 8999999999887654
No 449
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.67 E-value=74 Score=29.09 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=38.8
Q ss_pred CCCcceEEecCCcchHHHHHhc----CCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH
Q 042709 284 HPSIAWFLSHCGWNSTMEGLSM----GVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND 359 (398)
Q Consensus 284 ~~~~~~~ItHgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~ 359 (398)
.+++ +|+=||=||++.+.+. ++|++.+.. - .+|.-. .+.++++.+++.+++++.
T Consensus 72 ~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~--------G------~lGFL~------~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 72 GCEL--VLVLGGDGTILRAAELARAADVPVLGVNL--------G------HVGFLA------EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEec--------C------CCceec------cCCHHHHHHHHHHHHcCC
Confidence 4555 9999999999999764 788877632 1 133333 346788999999999764
No 450
>PTZ00445 p36-lilke protein; Provisional
Probab=35.56 E-value=2.9e+02 Score=23.79 Aligned_cols=105 Identities=10% Similarity=-0.004 Sum_probs=57.3
Q ss_pred cCHHH-HHHHHHHHHhCCCeEEEEeCccchH--------------HHHHhhcccccCCCCCeEEEE----cCCCCCCC--
Q 042709 23 GHVAP-LMKLATKIAEHGIDVTFVNTEFIHA--------------KIIASMQGKAENSSSQIMLVS----IPDGLDLQ-- 81 (398)
Q Consensus 23 GH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~--------------~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~-- 81 (398)
+|+.| +..+.++|.++|..|+++|..+-.. .++...... ...+.... +|.-+...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s----~~~~~i~~~~~yyp~~w~~p~~ 149 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKS----KCDFKIKKVYAYYPKFWQEPSD 149 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhc----CccceeeeeeeeCCcccCChhh
Confidence 45666 8889999999999999999877644 333222100 01222222 22111111
Q ss_pred ----CC--CCCCHHHH-HhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcCC
Q 042709 82 ----AD--EREDPHKL-MTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVPF 132 (398)
Q Consensus 82 ----~~--~~~~~~~~-~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~~ 132 (398)
.. +......+ ++.+.+...-. -++++.|-. ...+..|+.+|+-++.+...
T Consensus 150 y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 150 YRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDD-MNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred hhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCC-HHHHHHHHHCCCEEEEcCCh
Confidence 10 11111001 12222221223 678888866 46899999999999987643
No 451
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.55 E-value=51 Score=29.71 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
+-.+|.++-.+..| .++|..|+++||+|+++...
T Consensus 2 ~~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 2 DIKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred CccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 33689999887777 56888999999999999764
No 452
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=35.51 E-value=4.3e+02 Score=25.81 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc-c-----hHHHHHhhcccccCCCCCeEEEEcCCCCCCCCC
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF-I-----HAKIIASMQGKAENSSSQIMLVSIPDGLDLQAD 83 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (398)
.++|++++.-+ .-.+++++.|.+-|-++..+.... + .+.+++... .+ + ......
T Consensus 311 ~Gkrvai~~~~-----~~~~~l~~~l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~--------~~-----~--~~~~vv 370 (461)
T TIGR02931 311 ADKRVAIYGNP-----DLVIGLAEFCLDLEMKPVLLLLGDDNSGYVDDPRIKALQE--------NV-----D--YDMEIV 370 (461)
T ss_pred CCCeEEEEeCH-----HHHHHHHHHHHHCCCEEEEEEECCCCcccchhHHHHHHHh--------hC-----C--CCceEE
Confidence 46788776643 457788888899998887653321 1 112211100 00 0 000000
Q ss_pred CCCCHHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 84 EREDPHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
...+..++.+.+.+. +. ||++|.... +..+|+++|||++.+.
T Consensus 371 ~~~d~~~l~~~i~~~--~~~~Dliig~s~---~~~~a~k~gip~~~~g 413 (461)
T TIGR02931 371 TNADFWELESRIKNQ--GLELDLILGHSK---GRFISIDYNIPMVRVG 413 (461)
T ss_pred eCCCHHHHHHHHHhc--CCCCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 233455555443321 34 999999864 7899999999998753
No 453
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=35.50 E-value=81 Score=24.13 Aligned_cols=38 Identities=16% Similarity=0.386 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
.++..|++++++.. +...+..++.|.+.|.+++++...
T Consensus 7 ~~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 7 REGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp ESSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred eCCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 35678999988776 466799999999999988887653
No 454
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=35.47 E-value=1.7e+02 Score=28.86 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=26.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEH--GIDVTFVNTEFI 50 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~ 50 (398)
||||++..+++.| +|++.|++. |++|..+..+.+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~N 36 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLN 36 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCC
Confidence 6899999988877 578888887 999888855333
No 455
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=35.20 E-value=88 Score=27.00 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=34.1
Q ss_pred CCCEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 10 RQPHVLVIPFP-ALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 10 ~~~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
.+.-|++++=+ -.+...+.....+.|+++|++|.+++|.
T Consensus 149 ~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 149 RRTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred cCcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 34567788877 6899999999999999999999999997
No 456
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.16 E-value=1.8e+02 Score=25.06 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=54.8
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcc--cc--c-CCCCCeEEEEcCCCCCCCCCCCCCHHH
Q 042709 16 VIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQG--KA--E-NSSSQIMLVSIPDGLDLQADEREDPHK 90 (398)
Q Consensus 16 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~--~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
+----+.|--.=...++--+...||+|++++++....-.-++..+ .. + -....+.|.++.-.. -.........
T Consensus 33 IEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~--~~~~~~~~~~ 110 (235)
T COG2874 33 IEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEP--VNWGRRSARK 110 (235)
T ss_pred EECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccc--cccChHHHHH
Confidence 333346677777888999999999999999998654432222110 00 0 001124454442111 1102222334
Q ss_pred HHhhchhhccCC-ccEEEecCcchhH
Q 042709 91 LMTEDPQADTEC-TACVIADISVGWA 115 (398)
Q Consensus 91 ~~~~~~~~~~~~-pD~vi~D~~~~~~ 115 (398)
+++.+.+..+.. -|++|.|.+...+
T Consensus 111 ~L~~l~~~~k~~~~dViIIDSls~~~ 136 (235)
T COG2874 111 LLDLLLEFIKRWEKDVIIIDSLSAFA 136 (235)
T ss_pred HHHHHHhhHHhhcCCEEEEecccHHh
Confidence 444444444556 9999999997643
No 457
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=35.13 E-value=52 Score=28.48 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=25.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|+|+++-.+-.| ..+|+.|.+.||+|+.+-...
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCH
Confidence 466666665444 679999999999999987654
No 458
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=34.94 E-value=37 Score=25.85 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCccchHHHHH
Q 042709 25 VAPLMKLATKIAEHGIDVTFVNTEFIHAKIIA 56 (398)
Q Consensus 25 ~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 56 (398)
+.|.+.+.-.+.-|||+++++-|..+.+.+..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccccc
Confidence 45667777777889999999999988876644
No 459
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=34.77 E-value=62 Score=30.80 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHh
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIAS 57 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 57 (398)
++++|++...++ =-.+..+.+++.|.++|++|.++-++.....+...
T Consensus 3 ~~k~ill~v~gs-iaayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~ 49 (392)
T COG0452 3 EGKRILLGVTGS-IAAYKSVELVRLLRRSGAEVRVVMTESARKFITPL 49 (392)
T ss_pred CCceEEEEecCc-hhhhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcc
Confidence 345888777765 34577799999999999999999999877776544
No 460
>PLN02880 tyrosine decarboxylase
Probab=34.77 E-value=52 Score=32.41 Aligned_cols=70 Identities=13% Similarity=0.027 Sum_probs=44.2
Q ss_pred cceEEecCCcchHHHHHhcCC------------ceecccCccchhhHHHhhccceeeE----EEecCCC--CCCcCHHHH
Q 042709 287 IAWFLSHCGWNSTMEGLSMGV------------PFLCWPSFADQHHNRNYICDVWKIG----VQLLPDE--NGIITRQEI 348 (398)
Q Consensus 287 ~~~~ItHgG~~s~~eal~~Gv------------P~v~~P~~~DQ~~na~~~~~~~g~g----~~l~~~~--~~~~~~~~l 348 (398)
.++++|.||..+.+.||.... +-+++-...+-+.-..+.++.+|+| +.++.++ +..++.+.|
T Consensus 147 ~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L 226 (490)
T PLN02880 147 GGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELL 226 (490)
T ss_pred CceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHH
Confidence 456899999888888775532 2222222222244445555558998 4566543 457899999
Q ss_pred HHHHHHHh
Q 042709 349 QINVKALL 356 (398)
Q Consensus 349 ~~ai~~~l 356 (398)
+++|.+..
T Consensus 227 ~~~i~~~~ 234 (490)
T PLN02880 227 SEAISTDL 234 (490)
T ss_pred HHHHHHHH
Confidence 99998754
No 461
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=34.75 E-value=46 Score=21.90 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=33.6
Q ss_pred cCCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 042709 336 LPDENGIITRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQ 392 (398)
Q Consensus 336 ~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 392 (398)
+.++++.++.+++.+.+..+..... .+...++.+.+-+.....++..-..++|.+.
T Consensus 10 D~d~~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 10 DKDGDGYISKEELRRALKHLGRDMS-DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp STTSSSEEEHHHHHHHHHHTTSHST-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred cCCccCCCCHHHHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 3455789999999999988875321 2333333333333445566666666666653
No 462
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=34.65 E-value=58 Score=29.96 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=26.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
|||.++-.++.| ..+|..|.+.||+|+++...
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 478888888766 46789999999999998873
No 463
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=34.65 E-value=26 Score=31.21 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=31.4
Q ss_pred eecccCcccccCCCCcceEEecCCcchHHHHHhcCCceeccc
Q 042709 272 IVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWP 313 (398)
Q Consensus 272 v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P 313 (398)
+.+-++-..+|.+++. +||-.+. .-.||+.+|+|++++.
T Consensus 187 ~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 187 IDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFG 225 (269)
T ss_pred ECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEec
Confidence 3455677788999998 8887754 7789999999999975
No 464
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=34.62 E-value=2e+02 Score=26.63 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=23.8
Q ss_pred ccEEEe-cCcch-hHHHHHHHhCCceEEEcCCc
Q 042709 103 TACVIA-DISVG-WALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 103 pD~vi~-D~~~~-~~~~~A~~lgiP~v~~~~~~ 133 (398)
||+||+ |+..- .+..=|.++|||+|.+.-+.
T Consensus 153 Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 153 PDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 888776 44443 78888999999999977544
No 465
>PRK03094 hypothetical protein; Provisional
Probab=34.49 E-value=38 Score=23.84 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCeEEEEeCc
Q 042709 29 MKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 29 l~La~~L~~rGh~Vt~~~~~ 48 (398)
-.+.+.|.++||+|.=+.++
T Consensus 11 s~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred HHHHHHHHHCCCEEEecCcc
Confidence 46899999999999877654
No 466
>PF05361 PP1_inhibitor: PKC-activated protein phosphatase-1 inhibitor; InterPro: IPR008025 Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction [].; GO: 0042325 regulation of phosphorylation, 0005737 cytoplasm; PDB: 2RLT_A 1J2M_A 1K5O_A 1J2N_A.
Probab=34.38 E-value=28 Score=27.45 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=26.8
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhC
Q 042709 353 KALLKNDGIKGNSLKLKEIARKILVEGGSSFRKFDSFISQIKVLRC 398 (398)
Q Consensus 353 ~~~l~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 398 (398)
..+|+=++=.++++++++.+.++ .......|.+|+..|+++|+
T Consensus 77 DeLLDl~sdeeR~~~LqelL~~C---~~ptE~FI~ELL~kLkgL~k 119 (144)
T PF05361_consen 77 DELLDLESDEERRRKLQELLQDC---PKPTEDFIQELLSKLKGLRK 119 (144)
T ss_dssp HHHHCTSSTTHHHHHHHHHHTTC---SSTTHHHHHHHHHHCTTT--
T ss_pred HHHhcCCchHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHhhhc
Confidence 44443222356777888888774 34446778888888887764
No 467
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=34.17 E-value=46 Score=33.32 Aligned_cols=39 Identities=18% Similarity=-0.063 Sum_probs=27.9
Q ss_pred ccEEEecCcch---hHHHHHHHhCCceEEEcCCcHHHHHHHh
Q 042709 103 TACVIADISVG---WALEVAEAIGIARAAFVPFGPGSLALSL 141 (398)
Q Consensus 103 pD~vi~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 141 (398)
-.-||+..+-| .|....+...+++.++.++.++.+.-++
T Consensus 142 ~~~ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l 183 (633)
T PF05693_consen 142 KPKVIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYL 183 (633)
T ss_dssp SEEEEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHH
T ss_pred CCcEEEEechHhHhHHHHHHhccCCCeeEEEEecccchhhHh
Confidence 34555555544 6888999999999999999999876653
No 468
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=33.88 E-value=80 Score=24.31 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=28.1
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 15 LVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 15 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
+++..+..+.-.-+..+++.|+++|+.|..+..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 37 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPGH 37 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 455566666777799999999999999999865443
No 469
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=33.86 E-value=60 Score=31.05 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=25.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
|||.|+-.+..| ..+|..|+++||+|+.+..
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 478888776655 6889999999999998865
No 470
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=33.85 E-value=1e+02 Score=21.55 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=28.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042709 14 VLVIPFPALGHVAPLMKLATKIAEHGIDVTFVN 46 (398)
Q Consensus 14 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 46 (398)
+++...++.|=..-...|+..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666788888999999999999999998877
No 471
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=33.78 E-value=1.7e+02 Score=28.80 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=57.1
Q ss_pred cCCcchHHHHHhcCCceecccCcc--chhhHHHh--hccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCHHHHHHHHHH
Q 042709 293 HCGWNSTMEGLSMGVPFLCWPSFA--DQHHNRNY--ICDVWKIGVQLLPDENGIITRQEIQINVKALLKNDGIKGNSLKL 368 (398)
Q Consensus 293 HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~--~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~~~~~~a~~l 368 (398)
-||. |=++|+.+|.+-|+.+..+ |.-....- .... |.|+.... .+++.+..++.+.+. -|+..-..+
T Consensus 380 PcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~-gtGf~f~~-----~~~~~l~~al~rA~~--~y~~~~~~w 450 (487)
T COG0297 380 PCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGV-GTGFLFLQ-----TNPDHLANALRRALV--LYRAPPLLW 450 (487)
T ss_pred CCcH-HHHHHHHcCCcceEcccCCccceecCccchhccCc-eeEEEEec-----CCHHHHHHHHHHHHH--HhhCCHHHH
Confidence 3555 4568899999888888742 33222211 2343 77877743 399999999998885 455544446
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 042709 369 KEIARKILVEGGSSFRKFDSFISQIKVL 396 (398)
Q Consensus 369 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 396 (398)
+.....++.-.=+-.....+.++-.+..
T Consensus 451 ~~~~~~~m~~d~sw~~sa~~y~~lY~~~ 478 (487)
T COG0297 451 RKVQPNAMGADFSWDLSAKEYVELYKPL 478 (487)
T ss_pred HHHHHhhcccccCchhHHHHHHHHHHHH
Confidence 6666665431222255566666555544
No 472
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=33.72 E-value=3e+02 Score=23.45 Aligned_cols=90 Identities=18% Similarity=0.136 Sum_probs=50.7
Q ss_pred hhcCCCCc-EEEEEeCCcccCCHHHHHHhhccceecccCcccccCCCCcceEEecCCcchHHHHHh-cCCceecccCccc
Q 042709 240 RDKQAIGS-VTYVAFGRFSILGQEQLEQLALGKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLS-MGVPFLCWPSFAD 317 (398)
Q Consensus 240 l~~~~~~~-vVyvs~Gs~~~~~~~~~~~~~~~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~-~GvP~v~~P~~~D 317 (398)
+|.+.++. +-+--+||.+..+++.+++...-.+..|=|.-.|+-.|+. ---|-.-.-|.+. .++|.+++. |
T Consensus 23 lDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNp----aaPGP~kARE~l~~s~~Paiiig---D 95 (277)
T COG1927 23 LDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNP----AAPGPKKAREILSDSDVPAIIIG---D 95 (277)
T ss_pred HHhhcccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCC----CCCCchHHHHHHhhcCCCEEEec---C
Confidence 44443332 5555689989999887666544334445444444433332 0123334455554 599999984 5
Q ss_pred hhh--HHHhhccceeeEEEecC
Q 042709 318 QHH--NRNYICDVWKIGVQLLP 337 (398)
Q Consensus 318 Q~~--na~~~~~~~g~g~~l~~ 337 (398)
-|. .-..+++ .|+|.-+-+
T Consensus 96 aPg~~vkdelee-qGlGYIivk 116 (277)
T COG1927 96 APGLKVKDELEE-QGLGYIIVK 116 (277)
T ss_pred CccchhHHHHHh-cCCeEEEec
Confidence 552 2234567 499987743
No 473
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.54 E-value=65 Score=28.87 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=36.9
Q ss_pred CCCcceEEecCCcchHHHHHhc-CCceecccCccchhhHHHhhccceeeEEEecCCCCCCcCHHHHHHHHHHHhcCH
Q 042709 284 HPSIAWFLSHCGWNSTMEGLSM-GVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGIITRQEIQINVKALLKND 359 (398)
Q Consensus 284 ~~~~~~~ItHgG~~s~~eal~~-GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~~~l~~ai~~~l~~~ 359 (398)
.+++ +|+=||-||+..+.+. ..|++.+ |.- .+|.- -.++++++.+++.+++++.
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGI--------N~G------~lGFL------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGI--------NMG------GLGFL------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEE--------ECC------CCccC------cccCHHHHHHHHHHHHcCC
Confidence 3555 9999999999999884 4566554 111 12211 2357899999999999864
No 474
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=33.45 E-value=2.6e+02 Score=25.95 Aligned_cols=85 Identities=9% Similarity=0.016 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCccchHH--HHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCCcc
Q 042709 27 PLMKLATKIAEHGIDVTFVNTEFIHAK--IIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTECTA 104 (398)
Q Consensus 27 p~l~La~~L~~rGh~Vt~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pD 104 (398)
-+.+|++.|.++|++|.+++.+.-.+. ..+... . . ..-....+ . ...++.++...+.. -|
T Consensus 203 ~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~-~--~--~~~~~~~l------~--g~~sL~el~ali~~-----a~ 264 (352)
T PRK10422 203 KFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQ-G--C--QTPPVTAL------A--GKTTFPELGALIDH-----AQ 264 (352)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHH-h--c--CCCccccc------c--CCCCHHHHHHHHHh-----CC
Confidence 478999999999999999877643222 222110 0 0 00000001 0 12234444333321 57
Q ss_pred EEEecCcchhHHHHHHHhCCceEEEcC
Q 042709 105 CVIADISVGWALEVAEAIGIARAAFVP 131 (398)
Q Consensus 105 ~vi~D~~~~~~~~~A~~lgiP~v~~~~ 131 (398)
++|+.-. +..-+|..+|+|+|.++.
T Consensus 265 l~v~nDS--Gp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 265 LFIGVDS--APAHIAAAVNTPLICLFG 289 (352)
T ss_pred EEEecCC--HHHHHHHHcCCCEEEEEC
Confidence 7776543 578889999999998875
No 475
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=33.35 E-value=79 Score=29.96 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=32.5
Q ss_pred CCCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 10 RQPHVLVIPF--PALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 10 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
++++|+.+.. |+.|=..-.+.||..|+++|++|.++=...
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 4566664433 789999999999999999999999986654
No 476
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=33.28 E-value=76 Score=25.44 Aligned_cols=39 Identities=18% Similarity=0.452 Sum_probs=31.0
Q ss_pred CCCEEEEEcCC-------CccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 042709 10 RQPHVLVIPFP-------ALGHVAPLMKLATKIAEHGIDVTFVNTE 48 (398)
Q Consensus 10 ~~~~il~~~~~-------~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 48 (398)
+.+||+++..| +..|+--++.++.+++++|.+=.++.+-
T Consensus 36 ~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSV 81 (165)
T COG0678 36 KGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSV 81 (165)
T ss_pred CCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEe
Confidence 46888887776 3479999999999999999776665553
No 477
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.26 E-value=61 Score=31.34 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=27.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
|+.++++++.. |. .- +++|+.|+++|++|+++....
T Consensus 3 ~~~k~v~iiG~---g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGA---GV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECC---CH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 45677877743 44 33 499999999999999987754
No 478
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=33.07 E-value=3.3e+02 Score=24.04 Aligned_cols=90 Identities=20% Similarity=0.161 Sum_probs=50.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHH
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKL 91 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (398)
++|+++..-+.| ..||+.|.++|+.|++-+...... . .. .+..... .++ .+...+
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~-~~---------~~~~v~~--G~l-------~~~~~l 57 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-P-AD---------LPGPVRV--GGF-------GGAEGL 57 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-c-cc---------CCceEEE--CCC-------CCHHHH
Confidence 678887766555 478999999999888765544332 1 00 0121111 111 122222
Q ss_pred HhhchhhccCC-ccEEEecCcch-------hHHHHHHHhCCceEEEcC
Q 042709 92 MTEDPQADTEC-TACVIADISVG-------WALEVAEAIGIARAAFVP 131 (398)
Q Consensus 92 ~~~~~~~~~~~-pD~vi~D~~~~-------~~~~~A~~lgiP~v~~~~ 131 (398)
...+ .+. +++|| |..-+ -+..+|+.+|||++.|..
T Consensus 58 ~~~l----~~~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 58 AAYL----REEGIDLVI-DATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred HHHH----HHCCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 2222 344 77654 43333 256788999999999764
No 479
>PRK13236 nitrogenase reductase; Reviewed
Probab=33.05 E-value=89 Score=28.34 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=30.7
Q ss_pred CCEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 11 QPHVL-VIPFPALGHVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 11 ~~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
.+|++ |..=++-|=.+-.+.||..|+++|++|.++-.
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~ 42 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGC 42 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 45666 54447889999999999999999999999943
No 480
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=33.00 E-value=48 Score=31.85 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=29.0
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 042709 8 SCRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIH 51 (398)
Q Consensus 8 ~m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 51 (398)
.|++.||+++-.+..| +..++.|...+++||++...+..
T Consensus 7 ~~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCCc
Confidence 3567899998876544 44678887778999999876543
No 481
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=32.94 E-value=53 Score=28.22 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.2
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 12 PHVLVIP-FPALGHVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 12 ~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
|||.|+- .+..| ..|++.|.++||+|+++..
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 4677774 44433 4789999999999998754
No 482
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=32.80 E-value=4.2e+02 Score=25.87 Aligned_cols=93 Identities=8% Similarity=0.115 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCcc-chHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCC
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIA-EHGIDVTFVNTEF-IHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADERE 86 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (398)
.+++|++++..+. -...+++.|. +-|-+|+.+++.. ..+..++... ....+.-. + ...
T Consensus 325 L~GkrvaI~~~~~-----~~~~~~~~l~~ElGmevv~~~~~~~~~~~~~~~~~----~~~~~~i~--i---------~d~ 384 (461)
T TIGR01860 325 LQGKKMCIWTGGP-----RLWHWTKALEDDLGMQVVAMSSKFGHQEDFEKVIA----RGKEGTIY--I---------DDG 384 (461)
T ss_pred cCCCEEEEECCCc-----hHHHHHHHHHHhCCCEEEEEeeecCCHHHHHHHHH----hcCCCeEE--E---------eCC
Confidence 3578888866542 2367888998 6999998877642 2333333210 00000000 0 011
Q ss_pred CHHHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEE
Q 042709 87 DPHKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAA 128 (398)
Q Consensus 87 ~~~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~ 128 (398)
+..++.+.+ ... ||++|.... +..+|+++|||++.
T Consensus 385 ~~~e~~~~~----~~~~pDliig~s~---~~~~A~klgiP~vd 420 (461)
T TIGR01860 385 NELEFFEVL----DLIKPDVIFTGPR---VGELVKKLHIPYVN 420 (461)
T ss_pred CHHHHHHHH----HhcCCCEEEeCCc---chhhHhhcCCCEEe
Confidence 111222222 344 999999854 67799999999984
No 483
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=32.76 E-value=2.5e+02 Score=25.66 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=15.4
Q ss_pred HHHHHHHhCCceEEEcCCc
Q 042709 115 ALEVAEAIGIARAAFVPFG 133 (398)
Q Consensus 115 ~~~~A~~lgiP~v~~~~~~ 133 (398)
...+|+.+|+|++.+..+.
T Consensus 223 lA~~Ak~~~vPv~V~a~s~ 241 (303)
T TIGR00524 223 LAVLAKEFRIPFFVAAPLS 241 (303)
T ss_pred HHHHHHHhCCCEEEecccc
Confidence 4688999999999877654
No 484
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=32.24 E-value=1.4e+02 Score=28.12 Aligned_cols=166 Identities=10% Similarity=0.066 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhhccceEEeccccccccccccCCCceecCCcchHHh---hhcCCCC---cEEEEEeCCcccCCHHHHHHh
Q 042709 194 FGSTCATVQAFKISKWVLNNSVYELDSPACDLIPSVLPFDSTCLSW---RDKQAIG---SVTYVAFGRFSILGQEQLEQL 267 (398)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~v~~~~~~~---l~~~~~~---~vVyvs~Gs~~~~~~~~~~~~ 267 (398)
++-+.......+..+.+++..+-. .+.-+.+..++|.+- +.+++-- -+-|..||+..-.+...++.+
T Consensus 159 f~~mla~L~~a~~~~vvLLH~CcH-------NPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~ 231 (396)
T COG1448 159 FDGMLADLKTAPEGSVVLLHGCCH-------NPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLF 231 (396)
T ss_pred HHHHHHHHHhCCCCCEEEEecCCC-------CCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHH
Confidence 444555566678888888887643 111111112333322 2332211 155778887644445566666
Q ss_pred hc----cceecccCcccccCCCCcceEEecCCcchHHHHHhcCCceecccCccchhhHHHhhccceeeEEEecCCCCCCc
Q 042709 268 AL----GKIVEWAPQENDLGHPSIAWFLSHCGWNSTMEGLSMGVPFLCWPSFADQHHNRNYICDVWKIGVQLLPDENGII 343 (398)
Q Consensus 268 ~~----~~v~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~ 343 (398)
+. .++.....-.-=|=.-.+|.+.-.+--..+..-+...++-++.-.+.--|...+++.. ..+
T Consensus 232 a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva-------------~IL 298 (396)
T COG1448 232 AEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVA-------------TIL 298 (396)
T ss_pred HHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHH-------------HHh
Confidence 55 2333333222212223444455554444444444444444443333333333333322 123
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCc
Q 042709 344 TRQEIQINVKALLKNDGIKGNSLKLKEIARKILVEGGS 381 (398)
Q Consensus 344 ~~~~l~~ai~~~l~~~~~~~~a~~l~~~~~~~~~~~g~ 381 (398)
+..+|++-..+-++ .||+|..+|+..+.++..+-|.
T Consensus 299 ~~p~Lra~W~~El~--~Mr~Ri~~mR~~lv~~L~~~~~ 334 (396)
T COG1448 299 NNPELRAEWEQELE--EMRQRILEMRQALVDALKALGA 334 (396)
T ss_pred CCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhCC
Confidence 33444444443332 5899999999999888777443
No 485
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=32.23 E-value=88 Score=29.71 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=30.9
Q ss_pred CCCEEE-EEcC-CCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042709 10 RQPHVL-VIPF-PALGHVAPLMKLATKIAEHGIDVTFVN 46 (398)
Q Consensus 10 ~~~~il-~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~ 46 (398)
++++|+ |... |+.|=..-.+.||..|+.+|++|.++=
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 445665 4444 799999999999999999999999986
No 486
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=32.15 E-value=86 Score=25.47 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.4
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 19 FPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 19 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
-|+.|=..-.+.||..|+++|++|.++-...
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 3788999999999999999999999987654
No 487
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.11 E-value=94 Score=22.10 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=27.1
Q ss_pred EEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 13 HVLVIPFPAL--GHVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 13 ~il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
+|+++|.... .+..-...+++.|++.|.+|.+-..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5778887643 4566789999999999999988543
No 488
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=32.06 E-value=2.8e+02 Score=26.30 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchHHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHAKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPH 89 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (398)
.+.||++... -.-.+.|++.|.+.|-+|..+........-.+......... ...+. ...+..
T Consensus 270 ~g~~v~i~~~-----~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~--~~~v~-----------~~~~~~ 331 (398)
T PF00148_consen 270 GGKRVAIYGD-----PDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEES--DPEVI-----------IDPDPE 331 (398)
T ss_dssp TT-EEEEESS-----HHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTT--CSEEE-----------ESCBHH
T ss_pred cCceEEEEcC-----chhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCC--CcEEE-----------eCCCHH
Confidence 3678887433 36677999999999999999887665443322110000000 00110 122333
Q ss_pred HHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEcC
Q 042709 90 KLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFVP 131 (398)
Q Consensus 90 ~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~~ 131 (398)
+..+.+ ++. ||+++.+.. ...+|+++++|++.+..
T Consensus 332 ~~~~~l----~~~~pdl~ig~~~---~~~~a~~~~~~~~~~~~ 367 (398)
T PF00148_consen 332 EIEELL----EELKPDLLIGSSH---ERYLAKKLGIPLIRIGF 367 (398)
T ss_dssp HHHHHH----HHHT-SEEEESHH---HHHHHHHTT--EEE-SS
T ss_pred HHHHHH----HhcCCCEEEechh---hHHHHHHhCCCeEEEeC
Confidence 333322 344 999999955 78889999888887543
No 489
>PLN00016 RNA-binding protein; Provisional
Probab=31.98 E-value=58 Score=30.68 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=25.1
Q ss_pred CCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 11 QPHVLVIPF--PALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 11 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
+++|+++.. ++.|.+ -..|++.|.++||+|+.++-..
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecCC
Confidence 467877622 233333 3567899999999999988643
No 490
>PRK12828 short chain dehydrogenase; Provisional
Probab=31.95 E-value=93 Score=26.55 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 042709 9 CRQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNT 47 (398)
Q Consensus 9 m~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 47 (398)
++++++++. ++.|.+ -..+++.|.++|++|+.++.
T Consensus 5 ~~~k~vlIt--Gatg~i--G~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 5 LQGKVVAIT--GGFGGL--GRATAAWLAARGARVALIGR 39 (239)
T ss_pred CCCCEEEEE--CCCCcH--hHHHHHHHHHCCCeEEEEeC
Confidence 344555543 344555 47788999999999888775
No 491
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=31.89 E-value=2.3e+02 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=20.6
Q ss_pred CHHH-HHHHHHHHHhCCCeEEEEeCcc
Q 042709 24 HVAP-LMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 24 H~~p-~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
+.+| ...+.+.|.++|+.+.++|...
T Consensus 88 ~~~~g~~~~l~~l~~~g~~i~i~S~~~ 114 (185)
T TIGR02009 88 EVLPGIENFLKRLKKKGIAVGLGSSSK 114 (185)
T ss_pred CCCcCHHHHHHHHHHcCCeEEEEeCch
Confidence 4444 6778899999999999998763
No 492
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=31.85 E-value=76 Score=26.22 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=29.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH
Q 042709 17 IPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA 52 (398)
Q Consensus 17 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 52 (398)
-.-|+.|=..-...||..|+++|++|.++-......
T Consensus 5 ~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~ 40 (195)
T PF01656_consen 5 SGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAP 40 (195)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSH
T ss_pred cCCCCccHHHHHHHHHhccccccccccccccCcccc
Confidence 344788999999999999999999999999865443
No 493
>cd08806 CARD_CARD14_CARMA2 Caspase activation and recruitment domain of CARD14-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD14, also known as BIMP2 or CARMA2 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 2). CARD14 has been identified as a novel member of the MAGUK (membrane-associated guanylate kinase) family that functions as upstream activators of BCL10 (B-cell lymphoma 10) and NF-kB signaling. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways
Probab=31.80 E-value=1.5e+02 Score=21.16 Aligned_cols=45 Identities=11% Similarity=0.349 Sum_probs=30.9
Q ss_pred CCcCHHHHHHHHHHHhcCHHHHHHHHH---HHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 042709 341 GIITRQEIQINVKALLKNDGIKGNSLK---LKEIARKILVEGGSSFRKFDSFISQIKV 395 (398)
Q Consensus 341 ~~~~~~~l~~ai~~~l~~~~~~~~a~~---l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 395 (398)
+.++..+. ++|++++.+..++.+ |=+.+.. .|- +....|+++|..
T Consensus 29 ~IL~~~de----eeIls~~t~~~r~~k~g~LLDIL~t----rG~--~g~~aFLeSLe~ 76 (86)
T cd08806 29 KVLDQLDE----EEVLHSPRLTNRAMRVGHLLDLLKT----RGK--NGAIAFLESLKF 76 (86)
T ss_pred CCCChhhH----HHHHccchHHHHHHHHHHHHHHHHh----cCc--hHHHHHHHHHHH
Confidence 34455443 678888888888888 6566654 344 677788888873
No 494
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=31.78 E-value=2.3e+02 Score=26.91 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchH-HHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCH
Q 042709 10 RQPHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFIHA-KIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDP 88 (398)
Q Consensus 10 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
++.++.++..+ ++. ..+++.|.+.|-+|..+++..... ...+... ... ..+... ...+.
T Consensus 285 ~gkrv~I~~~~--~~~---~~~~~~l~elG~~v~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~-----~~~~~ 344 (406)
T cd01967 285 KGKKVIIYTGG--ARS---WHVIAALRELGMEVVAAGYEFGHDDDYERIRK--------ILD--EGTLLV-----DDYND 344 (406)
T ss_pred cCCEEEEEccC--cch---HHHHHHHHHcCCEEEEEEEecCCHHHHHHHHh--------cCC--CCcEEE-----eCCCH
Confidence 46778765543 443 345578889999987766543222 1111100 000 000000 11222
Q ss_pred HHHHhhchhhccCC-ccEEEecCcchhHHHHHHHhCCceEEEc
Q 042709 89 HKLMTEDPQADTEC-TACVIADISVGWALEVAEAIGIARAAFV 130 (398)
Q Consensus 89 ~~~~~~~~~~~~~~-pD~vi~D~~~~~~~~~A~~lgiP~v~~~ 130 (398)
.++.+.+ ++. ||++|.... ....|+++|+|++...
T Consensus 345 ~~~~~~~----~~~~pdl~ig~~~---~~~~a~~~gip~~~~~ 380 (406)
T cd01967 345 LELEELV----EKLKPDLILSGIK---EKYVAQKLGIPFLDLH 380 (406)
T ss_pred HHHHHHH----HhcCCCEEEeCCc---chHHHHhcCCCEEecC
Confidence 2332222 344 999998864 6788899999997654
No 495
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=31.78 E-value=1.9e+02 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.019 Sum_probs=23.7
Q ss_pred cCC-ccEEEecCcch---hHHHHHHHhCCceEE
Q 042709 100 TEC-TACVIADISVG---WALEVAEAIGIARAA 128 (398)
Q Consensus 100 ~~~-pD~vi~D~~~~---~~~~~A~~lgiP~v~ 128 (398)
++. .|+|+.|...+ .-..+++..|+|++.
T Consensus 175 ~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlL 207 (221)
T PF07302_consen 175 AEQGADLIVLDCMGYTQEMRDIVQRALGKPVLL 207 (221)
T ss_pred HhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEe
Confidence 556 99999999877 346788889999986
No 496
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=31.64 E-value=88 Score=27.64 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=32.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 042709 12 PHVLVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEF 49 (398)
Q Consensus 12 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 49 (398)
..|.|+.=|+-|=..-...||..|+++|++|.++=...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 35677766899999999999999999999999986544
No 497
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.30 E-value=2.9e+02 Score=22.59 Aligned_cols=94 Identities=11% Similarity=0.145 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCccch-HHHHHhhcccccCCCCCeEEEEcCCCCCCCCCCCCCHHHHHhhchhhccCC-ccE
Q 042709 28 LMKLATKIAEHGIDVTFVNTEFIH-AKIIASMQGKAENSSSQIMLVSIPDGLDLQADEREDPHKLMTEDPQADTEC-TAC 105 (398)
Q Consensus 28 ~l~La~~L~~rGh~Vt~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pD~ 105 (398)
+-.|.+...++|.+|.++++..-. +.+.+... ...++++++-..+++-. ..+....+ +.+... ||+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~----~~yP~l~ivg~~~g~f~----~~~~~~i~----~~I~~~~pdi 104 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR----RRYPGLRIVGYHHGYFD----EEEEEAII----NRINASGPDI 104 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH----HHCCCeEEEEecCCCCC----hhhHHHHH----HHHHHcCCCE
Confidence 456677777789999999986432 32222221 22368888876655421 11122222 233455 999
Q ss_pred EEecCcch----hHHHHHHHhCCceEEEcCCcH
Q 042709 106 VIADISVG----WALEVAEAIGIARAAFVPFGP 134 (398)
Q Consensus 106 vi~D~~~~----~~~~~A~~lgiP~v~~~~~~~ 134 (398)
|++-.-++ |.....+.++.+ +.+..+.+
T Consensus 105 v~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~ 136 (172)
T PF03808_consen 105 VFVGLGAPKQERWIARHRQRLPAG-VIIGVGGA 136 (172)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCC-EEEEECch
Confidence 99988776 788888888888 44444444
No 498
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=31.15 E-value=96 Score=27.00 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=28.9
Q ss_pred EEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 042709 13 HVL-VIPFPALGHVAPLMKLATKIAEHGIDVTFVN 46 (398)
Q Consensus 13 ~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 46 (398)
+++ ++...+.|=..-...|++.|.++|++|-++-
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 444 5656788999999999999999999999984
No 499
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=31.15 E-value=80 Score=27.90 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=31.3
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 15 LVIPFPALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 15 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
++..-|+.|-......+|..++++|++|.++....-
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 344558999999999999999999999999998764
No 500
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=31.11 E-value=4.7e+02 Score=27.39 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 042709 11 QPHVLVIPF--PALGHVAPLMKLATKIAEHGIDVTFVNTEFI 50 (398)
Q Consensus 11 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 50 (398)
+.|++.++. |+.|-..-...||..|++.|++|.++-.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 345554443 6889999999999999999999999976543
Done!