Your job contains 1 sequence.
>042710
GVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIR
VTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREIS
AAVPEFHARFSAKSKIYHYKIYNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDF
SAFVNIQRNDRALNPVKSIFRFDVIEMGALLQLEVEGSGFLYRQVRNMVNHSYCSRL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042710
(237 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077552 - symbol:AT3G06950 species:3702 "Arabi... 836 1.9e-83 1
TIGR_CMR|GSU_2877 - symbol:GSU_2877 "tRNA pseudouridine s... 343 3.3e-31 1
TIGR_CMR|CHY_2276 - symbol:CHY_2276 "tRNA pseudouridine s... 334 3.0e-30 1
TIGR_CMR|DET_0504 - symbol:DET_0504 "tRNA pseudouridine s... 294 5.2e-26 1
UNIPROTKB|P07649 - symbol:truA "tRNA pseudouridine syntha... 293 6.6e-26 1
TIGR_CMR|CBU_0892 - symbol:CBU_0892 "tRNA pseudouridine s... 292 8.4e-26 1
UNIPROTKB|Q9KTA4 - symbol:truA "tRNA pseudouridine syntha... 290 1.4e-25 1
TIGR_CMR|VC_0999 - symbol:VC_0999 "tRNA pseudouridine syn... 290 1.4e-25 1
TIGR_CMR|ECH_0622 - symbol:ECH_0622 "tRNA pseudouridine s... 279 2.0e-24 1
TIGR_CMR|APH_0502 - symbol:APH_0502 "tRNA pseudouridine s... 271 1.4e-23 1
TIGR_CMR|NSE_0020 - symbol:NSE_0020 "tRNA pseudouridine s... 258 3.4e-22 1
TIGR_CMR|SPO_3143 - symbol:SPO_3143 "tRNA pseudouridine s... 240 2.7e-20 1
UNIPROTKB|P65846 - symbol:truA "tRNA pseudouridine syntha... 231 2.5e-19 1
UNIPROTKB|E1BUI0 - symbol:PUSL1 "tRNA pseudouridine synth... 186 1.6e-14 1
DICTYBASE|DDB_G0283061 - symbol:DDB_G0283061 "tRNA pseudo... 172 3.6e-14 2
TAIR|locus:2024397 - symbol:AT1G09800 species:3702 "Arabi... 172 5.7e-14 2
MGI|MGI:3047787 - symbol:Pusl1 "pseudouridylate synthase-... 174 4.4e-13 1
POMBASE|SPAC25B8.05 - symbol:SPAC25B8.05 "tRNA-pseudourid... 179 4.9e-13 1
CGD|CAL0000624 - symbol:orf19.6297 species:5476 "Candida ... 179 5.9e-13 1
TIGR_CMR|CJE_0914 - symbol:CJE_0914 "tRNA pseudouridine s... 170 1.2e-12 1
UNIPROTKB|F1RJE9 - symbol:PUSL1 "tRNA pseudouridine synth... 163 1.5e-10 1
UNIPROTKB|A6QP68 - symbol:PUSL1 "tRNA pseudouridine synth... 160 4.7e-10 1
UNIPROTKB|Q8N0Z8 - symbol:PUSL1 "tRNA pseudouridine synth... 159 5.7e-10 1
DICTYBASE|DDB_G0288909 - symbol:pus3 "tRNA pseudouridylat... 140 1.3e-09 2
RGD|1559560 - symbol:Pusl1 "pseudouridylate synthase-like... 149 9.6e-09 1
WB|WBGene00006473 - symbol:tag-124 species:6239 "Caenorha... 139 1.8e-08 2
UNIPROTKB|F1PXJ5 - symbol:PUSL1 "tRNA pseudouridine synth... 147 2.2e-08 1
UNIPROTKB|J9P592 - symbol:PUSL1 "tRNA pseudouridine synth... 147 2.3e-08 1
UNIPROTKB|F1P3X5 - symbol:PUS3 "tRNA pseudouridine syntha... 125 2.7e-08 2
POMBASE|SPCC126.03 - symbol:pus1 "tRNA pseudouridine synt... 128 4.3e-08 2
ASPGD|ASPL0000001573 - symbol:AN6165 species:162425 "Emer... 128 6.6e-08 2
SGD|S000001895 - symbol:DEG1 "tRNA:pseudouridine synthase... 145 9.3e-08 1
DICTYBASE|DDB_G0290987 - symbol:pus1 "tRNA pseudouridylat... 130 1.1e-07 2
SGD|S000006133 - symbol:PUS1 "tRNA:pseudouridine synthase... 145 1.3e-07 1
UNIPROTKB|F1LXZ7 - symbol:Pusl1 "tRNA pseudouridine synth... 132 5.0e-07 1
UNIPROTKB|E2RGS6 - symbol:PUS3 "tRNA pseudouridine syntha... 114 2.0e-06 2
UNIPROTKB|F1RFR2 - symbol:PUS1 "tRNA pseudouridine syntha... 131 4.4e-06 1
FB|FBgn0038811 - symbol:CG4159 species:7227 "Drosophila m... 131 4.5e-06 1
SGD|S000003031 - symbol:PUS2 "Mitochondrial tRNA:pseudour... 118 5.1e-06 2
UNIPROTKB|Q9BZE2 - symbol:PUS3 "tRNA pseudouridine(38/39)... 108 8.3e-06 2
GENEDB_PFALCIPARUM|PFE0815w - symbol:PFE0815w "hypothetic... 113 8.4e-06 2
UNIPROTKB|Q8I3U5 - symbol:PFE0815w "tRNA pseudouridine sy... 113 8.4e-06 2
UNIPROTKB|G4MKS9 - symbol:MGG_16154 "tRNA-pseudouridine s... 99 8.6e-06 3
RGD|1310757 - symbol:Pus3 "pseudouridylate synthase 3" sp... 101 1.3e-05 2
POMBASE|SPBC887.11 - symbol:pus2 "tRNA pseudouridine synt... 112 1.5e-05 2
POMBASE|SPCC16C4.06c - symbol:SPCC16C4.06c "tRNA pseudour... 125 2.0e-05 1
UNIPROTKB|J9NVH5 - symbol:PUS1 "tRNA pseudouridine syntha... 121 5.6e-05 1
WB|WBGene00004248 - symbol:pus-1 species:6239 "Caenorhabd... 121 6.0e-05 1
UNIPROTKB|E2QW32 - symbol:PUS1 "tRNA pseudouridine syntha... 121 6.6e-05 1
ASPGD|ASPL0000040109 - symbol:AN3170 species:162425 "Emer... 104 9.2e-05 3
DICTYBASE|DDB_G0281619 - symbol:DDB_G0281619 "tRNA pseudo... 118 0.00014 2
UNIPROTKB|E1BDL3 - symbol:PUS1 "tRNA pseudouridine syntha... 117 0.00019 1
UNIPROTKB|F1NZ90 - symbol:PUS1 "tRNA pseudouridine syntha... 115 0.00029 1
TAIR|locus:2012898 - symbol:AT1G20370 species:3702 "Arabi... 89 0.00093 2
>TAIR|locus:2077552 [details] [associations]
symbol:AT3G06950 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:GKSFLWE EMBL:BT029513
IPI:IPI00532571 RefSeq:NP_187351.2 UniGene:At.18751
UniGene:At.40432 ProteinModelPortal:A1A6J3 SMR:A1A6J3 STRING:A1A6J3
EnsemblPlants:AT3G06950.1 GeneID:819880 KEGG:ath:AT3G06950
TAIR:At3g06950 InParanoid:A1A6J3 PhylomeDB:A1A6J3
ProtClustDB:CLSN2690754 Genevestigator:A1A6J3 Uniprot:A1A6J3
Length = 323
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 156/225 (69%), Positives = 185/225 (82%)
Query: 5 VGLEGTNNTVKPPTDDSFPGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKL 64
+ + N++VK DS +KWRLVI YDGTR+AGWQ+Q SPPTIQ ++EKALI++T+L
Sbjct: 24 ISMTNLNSSVK--VSDS-GAYKWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITEL 80
Query: 65 EREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVP 124
R++L+L+GA RTD GVHAWGQVAHF+TPF+Y L+S HAALNGLLP DIRVRE+SAAVP
Sbjct: 81 GRKELQLIGAGRTDAGVHAWGQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVP 140
Query: 125 EFHARFSAKSKIYHYKIYNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFV 184
EFHARFSA SK+Y Y+IYND MDPFQ H+AYH YKLN + MREAA FVGKHDFSAF
Sbjct: 141 EFHARFSASSKVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFA 200
Query: 185 NIQRNDRALNPVKSIFRFDVIEMGALLQLEVEGSGFLYRQVRNMV 229
N R D +P+K+I RFDVI+MG+LLQLEVEGSGFLYRQVRNMV
Sbjct: 201 NATREDGVPDPLKTISRFDVIQMGSLLQLEVEGSGFLYRQVRNMV 245
>TIGR_CMR|GSU_2877 [details] [associations]
symbol:GSU_2877 "tRNA pseudouridine synthase A"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:NP_953919.1 ProteinModelPortal:P60350
GeneID:2688667 KEGG:gsu:GSU2877 PATRIC:22028615
BioCyc:GSUL243231:GH27-2866-MONOMER Uniprot:P60350
Length = 244
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 82/202 (40%), Positives = 111/202 (54%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+L++ YDGT YAGWQ Q + +IQ +VE AL R+ K E +RL + RTD GVHA G V
Sbjct: 5 KLILEYDGTNYAGWQLQPNGLSIQEVVEGALARLLK---EPVRLRASGRTDAGVHARGMV 61
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
A F T S L + LN LLPPDI VR A+P F+ RF+A K Y Y I+
Sbjct: 62 AAFDTDRSIP-LRAFSDGLNALLPPDIAVRSADEALPGFNPRFAATGKHYRYTIHRGERR 120
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM 207
P ++H LN MREAA + G+ DF++F A ++ + ++ +
Sbjct: 121 SPLVRLQSWHVRGALNLAAMREAARHLTGERDFASFRTA--GCAARTTIRRVDAVEISDD 178
Query: 208 GALLQLEVEGSGFLYRQVRNMV 229
G +L ++V GSGFL VR MV
Sbjct: 179 GEMLTVDVHGSGFLRNMVRIMV 200
>TIGR_CMR|CHY_2276 [details] [associations]
symbol:CHY_2276 "tRNA pseudouridine synthase A"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:YP_361085.1 STRING:Q3A9U9 GeneID:3728226
KEGG:chy:CHY_2276 PATRIC:21277623
BioCyc:CHYD246194:GJCN-2275-MONOMER Uniprot:Q3A9U9
Length = 246
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 81/205 (39%), Positives = 111/205 (54%)
Query: 23 PGFKWRLVIGYDGTRYAGWQFQ-TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGV 81
P FK L I YDGT +AG+Q Q +P TIQ I+E+ L ++ K E ++++GA RTD GV
Sbjct: 5 PNFK--LTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKILK---EPVKVIGAGRTDAGV 59
Query: 82 HAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 141
HA GQV +F P+ ++ I LN LP IRV E +FHAR+SA+ K Y Y +
Sbjct: 60 HALGQVVNFSAPWKAP-VDKIPEILNNTLPTAIRVLEAEIVPDDFHARYSARKKEYRYYL 118
Query: 142 YNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFR 201
Y PF YA+ KL+ + +A EY +G HDFS F + + NP+K++F
Sbjct: 119 YYGPP-SPFYERYAWALPQKLDREKVAKALEYLIGTHDFSGFGAAGSSGK--NPIKTMFE 175
Query: 202 FDVIEMGALLQLEVEGSGFLYRQVR 226
E G L FLY+ R
Sbjct: 176 ASYREDGFLGYFTFVADSFLYKMAR 200
>TIGR_CMR|DET_0504 [details] [associations]
symbol:DET_0504 "tRNA pseudouridine synthase A"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:YSINANR
RefSeq:YP_181248.1 ProteinModelPortal:Q3Z951 STRING:Q3Z951
GeneID:3230211 KEGG:det:DET0504 PATRIC:21608077
ProtClustDB:CLSK837466 BioCyc:DETH243164:GJNF-504-MONOMER
Uniprot:Q3Z951
Length = 248
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 80/206 (38%), Positives = 108/206 (52%)
Query: 29 LVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 88
LVI Y+GTRY+G+Q Q TIQ +E A IR KL E R+ G+ RTD GVHA QV
Sbjct: 3 LVIEYEGTRYSGFQVQDKGATIQGELETA-IR--KLTSEQTRVSGSGRTDAGVHAAYQVV 59
Query: 89 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 148
+++ S GL+ I LN LPPDI V+E+ F R A S+ Y Y+I N
Sbjct: 60 SYLSESSL-GLDKIKGGLNFYLPPDIAVKEVHFVAESFDVRRRAISREYSYQILNSKTRS 118
Query: 149 PFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPV--KSIFRFDVIE 206
P A+ YKL+ LM +A + G+HDF AF + +L P K++ R +
Sbjct: 119 PLARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFAS------SLGPEIKKTVRRVNWTR 172
Query: 207 MGAL---LQLEVEGSGFLYRQVRNMV 229
+G L +E + FL QVRN +
Sbjct: 173 LGIREDRLIFNIEANSFLTHQVRNTI 198
>UNIPROTKB|P07649 [details] [associations]
symbol:truA "tRNA pseudouridine synthase I" species:83333
"Escherichia coli K-12" [GO:0000049 "tRNA binding" evidence=IDA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:M68934
GO:GO:0000049 GO:GO:0009982 SUPFAM:SSF55120 EMBL:M15543 EMBL:X02743
GO:GO:0031119 BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 ProtClustDB:PRK00021
EMBL:M15542 PIR:B23792 RefSeq:NP_416821.1 RefSeq:YP_490560.1
PDB:1DJ0 PDB:2NQP PDB:2NR0 PDB:2NRE PDBsum:1DJ0 PDBsum:2NQP
PDBsum:2NR0 PDBsum:2NRE ProteinModelPortal:P07649 SMR:P07649
DIP:DIP-11043N IntAct:P07649 MINT:MINT-1310146 PRIDE:P07649
EnsemblBacteria:EBESCT00000002191 EnsemblBacteria:EBESCT00000002192
EnsemblBacteria:EBESCT00000017099 GeneID:12932365 GeneID:946793
KEGG:ecj:Y75_p2284 KEGG:eco:b2318 PATRIC:32120007 EchoBASE:EB0449
EcoGene:EG10454 OMA:TPFRNVH BioCyc:EcoCyc:EG10454-MONOMER
BioCyc:ECOL316407:JW2315-MONOMER BioCyc:MetaCyc:EG10454-MONOMER
EvolutionaryTrace:P07649 Genevestigator:P07649 Uniprot:P07649
Length = 270
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 71/208 (34%), Positives = 109/208 (52%)
Query: 23 PGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVH 82
P +K L I YDG++Y GWQ Q ++Q +EKAL +V E + + A RTD GVH
Sbjct: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVH 64
Query: 83 AWGQVAHF-ITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 141
GQV HF T D ++ +N LP DI VR + +FHARFSA ++ Y Y I
Sbjct: 65 GTGQVVHFETTALRKDAAWTL--GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII 122
Query: 142 YNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFR 201
YN + H L+ M AA+ +G++DF++F +Q R P +++
Sbjct: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRT--PWRNVMH 180
Query: 202 FDVIEMGALLQLEVEGSGFLYRQVRNMV 229
+V G + ++++ + F++ VRN+V
Sbjct: 181 INVTRHGPYVVVDIKANAFVHHMVRNIV 208
>TIGR_CMR|CBU_0892 [details] [associations]
symbol:CBU_0892 "tRNA pseudouridine synthase A"
species:227377 "Coxiella burnetii RSA 493" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248672 ProtClustDB:PRK00021 OMA:TPFRNVH
RefSeq:YP_338281.1 ProteinModelPortal:Q4AAX9 SMR:Q4AAX9
GeneID:1208785 KEGG:cbu:CBU_0892 PATRIC:17930485
BioCyc:CBUR227377:GJ7S-885-MONOMER Uniprot:Q4AAX9
Length = 261
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 73/205 (35%), Positives = 109/205 (53%)
Query: 28 RLVIG--YDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
R+ +G YDG+ Y GWQ Q + T+Q VEKAL V + + A RTD GVHA
Sbjct: 3 RIALGIRYDGSAYHGWQVQEALKTVQGEVEKALSAVAN---HPVFVTCAGRTDAGVHASA 59
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QVAHF T +Y + N LP DI + A +FHAR+SA ++ Y Y +YN
Sbjct: 60 QVAHFDTT-AYRSDHAWVFGANSNLPHDISILWAKAVEEDFHARYSAMARRYRYIVYNHE 118
Query: 146 VMDPF-QHHYAYHSVYK-LNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFD 203
+ + +H Y+ L+ M+ A+Y +G+HDFS+F R PV+ IF+ +
Sbjct: 119 IRPAILRKAIGWH--YRPLDEKRMQAGAQYLIGEHDFSSFQGAGCQSRT--PVRKIFQIE 174
Query: 204 VIEMGALLQLEVEGSGFLYRQVRNM 228
+ + ++ +EV+ + FL VRN+
Sbjct: 175 IYRIRRMVVIEVQANAFLLHMVRNI 199
>UNIPROTKB|Q9KTA4 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 69/203 (33%), Positives = 107/203 (52%)
Query: 28 RLVIG--YDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
R+ +G YDGT Y GWQ Q ++Q +EKAL +K+ + + A RTD GVH G
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKAL---SKIANHPVEVQCAGRTDAGVHGTG 58
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QV HF T + A N LP DI VR A EFHARFSA ++ Y Y IYN
Sbjct: 59 QVVHFDTTAERQMVAWTMGA-NANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHV 117
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
+ H +L+ M++A +Y +G++DF++F + R+ P +++ +V
Sbjct: 118 YRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRS--PWRNVMHLNVT 175
Query: 206 EMGALLQLEVEGSGFLYRQVRNM 228
G + ++++ + F++ VRN+
Sbjct: 176 RHGRYVVIDIKANAFVHHMVRNI 198
>TIGR_CMR|VC_0999 [details] [associations]
symbol:VC_0999 "tRNA pseudouridine synthase A" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 69/203 (33%), Positives = 107/203 (52%)
Query: 28 RLVIG--YDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
R+ +G YDGT Y GWQ Q ++Q +EKAL +K+ + + A RTD GVH G
Sbjct: 2 RIALGIEYDGTHYYGWQRQREVKSVQEALEKAL---SKIANHPVEVQCAGRTDAGVHGTG 58
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QV HF T + A N LP DI VR A EFHARFSA ++ Y Y IYN
Sbjct: 59 QVVHFDTTAERQMVAWTMGA-NANLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHV 117
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
+ H +L+ M++A +Y +G++DF++F + R+ P +++ +V
Sbjct: 118 YRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRS--PWRNVMHLNVT 175
Query: 206 EMGALLQLEVEGSGFLYRQVRNM 228
G + ++++ + F++ VRN+
Sbjct: 176 RHGRYVVIDIKANAFVHHMVRNI 198
>TIGR_CMR|ECH_0622 [details] [associations]
symbol:ECH_0622 "tRNA pseudouridine synthase A"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 ProtClustDB:PRK00021
RefSeq:YP_507432.1 ProteinModelPortal:Q2GGK1 STRING:Q2GGK1
GeneID:3927636 KEGG:ech:ECH_0622 PATRIC:20576696 OMA:YSINANR
BioCyc:ECHA205920:GJNR-624-MONOMER Uniprot:Q2GGK1
Length = 245
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 73/209 (34%), Positives = 113/209 (54%)
Query: 26 KWRLVIGYDGTRYAGWQFQT-SPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 84
++++ I Y+G+ + GWQ Q S +IQ I+E A++ K ++ + A RTD GVHA
Sbjct: 2 RYKITIEYNGSNFIGWQKQKHSSNSIQEILENAIL---KFSQQHTTVYVAGRTDAGVHAL 58
Query: 85 GQVAHFITPFSYDGLESIHAALN-GLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI-- 141
GQVAHF + D + A+N L+P I + + +FHARFSAK + Y YKI
Sbjct: 59 GQVAHFDLTTNLDTYV-VRNAINYHLIPHAIAILSVEKTDDKFHARFSAKKRHYLYKIIN 117
Query: 142 -YNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIF 200
Y+ +D + + H+ LN M +A EY G HDFS+F R+ ++ NP+K+I
Sbjct: 118 RYSPLTID-YNRAWLIHN--PLNIENMIQAIEYIKGNHDFSSFR--ARHCQSKNPIKTID 172
Query: 201 RFDVIEMGALLQLEVEGSGFLYRQVRNMV 229
+I + + + FL+ QVR +V
Sbjct: 173 DLKIIHNNQSINIHISAISFLHHQVRIIV 201
>TIGR_CMR|APH_0502 [details] [associations]
symbol:APH_0502 "tRNA pseudouridine synthase A"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:YP_505097.1 ProteinModelPortal:Q2GKK4
STRING:Q2GKK4 GeneID:3931158 KEGG:aph:APH_0502 PATRIC:20949644
HOGENOM:HOG000248672 OMA:RHYRYRI ProtClustDB:PRK00021
BioCyc:APHA212042:GHPM-526-MONOMER Uniprot:Q2GKK4
Length = 246
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 67/203 (33%), Positives = 109/203 (53%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIR-VTKLEREDLRLVGASRTDTGVHAW 84
+++ V+ Y+GT + GWQ Q + V++++ R + + ++ + + A RTD GVHA
Sbjct: 2 RYKAVVEYEGTSFIGWQRQHG--VVGKSVQESIERSIKEFCQQSVIVYAAGRTDAGVHAT 59
Query: 85 GQVAHFITPFSYDGLESIHAALNGLLPPD-IRVREISAAVPEFHARFSAKSKIYHYKIYN 143
GQV HF S + I ALN L + + + ++ EFHARFSAK + Y YKI N
Sbjct: 60 GQVVHFDLKVSREDYV-IKNALNHYLRNEKVSILQLERVDEEFHARFSAKKRHYTYKISN 118
Query: 144 DAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFD 203
+H +LN MREAA Y VGKHDF++F ++ ++ + +K++ D
Sbjct: 119 REAPLCIDLMRMWHVPKRLNVENMREAASYIVGKHDFASFR--AKDCQSKSSIKTVDSID 176
Query: 204 VIEMGALLQLEVEGSGFLYRQVR 226
+I + + + FL++QVR
Sbjct: 177 IIAAEEEININISAQSFLHKQVR 199
>TIGR_CMR|NSE_0020 [details] [associations]
symbol:NSE_0020 "tRNA pseudouridine synthase A"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
RefSeq:YP_505923.1 ProteinModelPortal:Q2GF33 STRING:Q2GF33
GeneID:3932291 KEGG:nse:NSE_0020 PATRIC:22680151
ProtClustDB:CLSK2528006 BioCyc:NSEN222891:GHFU-58-MONOMER
Uniprot:Q2GF33
Length = 243
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 71/206 (34%), Positives = 109/206 (52%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
+++ ++ Y GT ++GWQ Q S P++Q +E L + L +E + + A RTD GVHA G
Sbjct: 2 RYKAIVEYVGTGFSGWQKQMSAPSVQEELESVL---SFLLKEKIAVNVAGRTDAGVHALG 58
Query: 86 QVAHFITPFS-YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 144
QV HF S + ++A L I + +I F ARFSA + Y YKI N
Sbjct: 59 QVFHFDARESTLQPFQIVNAVNYHLKEKLIVLLKIEIVDETFDARFSAIRRHYQYKITNR 118
Query: 145 AV-MDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFD 203
+ F++ ++H LN L+RE A+Y VGKHDF +F + + A N ++++ R +
Sbjct: 119 KTPLAVFKNR-SWHVPQTLNLDLIREQAQYLVGKHDFQSFRSSKCG--ASNAIRTLDRLE 175
Query: 204 VIEMGALLQLEVEGSGFLYRQVRNMV 229
V + G + FL+ QVR MV
Sbjct: 176 VEKNGEEMIFHASAKSFLHHQVRIMV 201
>TIGR_CMR|SPO_3143 [details] [associations]
symbol:SPO_3143 "tRNA pseudouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
ProtClustDB:PRK00021 RefSeq:YP_168346.1 ProteinModelPortal:Q5LNR0
GeneID:3193303 KEGG:sil:SPO3143 PATRIC:23379731 Uniprot:Q5LNR0
Length = 262
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 65/209 (31%), Positives = 104/209 (49%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
++ L + Y GT +AGWQ Q P++Q +E AL R LE + A RTD GVH G
Sbjct: 3 RYALKVEYLGTPFAGWQRQKDLPSVQGAIETALAR---LEPGPHTIAAAGRTDAGVHGLG 59
Query: 86 QVAHFITPFSYDGLESIHAALN-GLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 144
QVAH +D + ALN L P + + + ++HARFSA + Y +++
Sbjct: 60 QVAHCDLTRDWDPFR-LSEALNYHLKPQPVAITAAARVAEDWHARFSATERQYLFRLLMR 118
Query: 145 AVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSI--FRF 202
+ ++L+ M+ AA+ +G+HDF+ F + +A +PVK++ R
Sbjct: 119 RAPATHDAGLVWQVGHRLDARAMQAAADLLLGRHDFTTFRS--SICQAASPVKTLDELRV 176
Query: 203 DVIEM--GALLQLEVEGSGFLYRQVRNMV 229
+ +E G ++ V FL+ QVR+ V
Sbjct: 177 EAVESFSGPEIRFHVRARSFLHNQVRSFV 205
>UNIPROTKB|P65846 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842583
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248674 ProtClustDB:PRK00021 OMA:TPFRNVH PIR:D70565
RefSeq:NP_217972.2 RefSeq:NP_338087.1 ProteinModelPortal:P65846
SMR:P65846 EnsemblBacteria:EBMYCT00000002601
EnsemblBacteria:EBMYCT00000071399 GeneID:887590 GeneID:922954
KEGG:mtc:MT3562 KEGG:mtu:Rv3455c PATRIC:18129561
TubercuList:Rv3455c Uniprot:P65846
Length = 297
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 72/218 (33%), Positives = 101/218 (46%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
RL I YDGT +AGW Q T+ ++ AL T + R +RL A RTD GVHA GQV
Sbjct: 25 RLDIAYDGTDFAGWAAQVGQRTVAGDLDAAL---TTIFRTPVRLRAAGRTDAGVHASGQV 81
Query: 88 AHFITPFSYDGLESI-----HAA----------LNGLLPPDIRVREISAAVPEFHARFSA 132
AH P D L + H L LP D+R+ +I+ A F ARFSA
Sbjct: 82 AHVDVPA--DALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSA 139
Query: 133 KSKIYHYKIYNDAV-MDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDR 191
+ Y Y++ ++P Q Y +L+ M A+ +G HDF+AF R+
Sbjct: 140 LRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFC---RHRE 196
Query: 192 ALNPVKSIFRFDVIEMGALLQLEVEGSGFLYRQVRNMV 229
++ + R D G L+ V F + VR++V
Sbjct: 197 GATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLV 234
>UNIPROTKB|E1BUI0 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:AADN02040857 EMBL:AADN02040858
IPI:IPI00574950 RefSeq:XP_417580.2 UniGene:Gga.10892
Ensembl:ENSGALT00000002630 GeneID:419419 KEGG:gga:419419
NextBio:20822478 Uniprot:E1BUI0
Length = 291
Score = 186 (70.5 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 71/234 (30%), Positives = 108/234 (46%)
Query: 23 PGFKWRLVIGYDGTRYAGWQFQTSPPT----IQCIVEKALIRVTKLEREDLRLVGASRTD 78
P ++ + Y GT+Y+G QTS +Q +EKA + + + +SRTD
Sbjct: 4 PKTRYLVFFQYWGTKYSG-VMQTSAEQSGIGVQNYLEKAAQNLKPVVPIKFHI--SSRTD 60
Query: 79 TGVHAWGQVAHFI---TPFSYDGLESIH-AALNGLLPPD-IRVREISAAVPEFHARFSAK 133
+GVHA AH P E + LN L P+ IR+ FHARFSA
Sbjct: 61 SGVHALCNSAHLDIQRAPGKPAFQERVLIGCLNHHLKPEPIRILSAYRVTNNFHARFSAL 120
Query: 134 SKIYHYKIY----NDAVMDPFQHH--YAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQ 187
S+ Y Y++ + + + F+ +A Y LN M++AA++ +G HDFS F ++
Sbjct: 121 SRTYIYRLLMGCTHHSEIPVFERDLCWAPPGGY-LNVPAMQDAAQFLLGTHDFSTFCSLN 179
Query: 188 RNDRALNPVKSIFRFDVIEMGALL------------QLEVEGSGFLYRQVRNMV 229
+PVK+I + D+ L +L+ + FLYRQVR MV
Sbjct: 180 SETPFRSPVKTILQADIQPSSGFLSHHYEYRGLQFWELKFKSRSFLYRQVRRMV 233
>DICTYBASE|DDB_G0283061 [details] [associations]
symbol:DDB_G0283061 "tRNA pseudouridine synthase truA
family" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0283061 GO:GO:0003723 EMBL:AAFI02000049
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 RefSeq:XP_639285.1 ProteinModelPortal:Q54RR6
STRING:Q54RR6 EnsemblProtists:DDB0218427 GeneID:8623854
KEGG:ddi:DDB_G0283061 InParanoid:Q54RR6 OMA:SISHIKI
ProtClustDB:CLSZ2728984 Uniprot:Q54RR6
Length = 343
Score = 172 (65.6 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 56/199 (28%), Positives = 102/199 (51%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALI-RVTKLEREDLRLVGASRTDTGVHAW 84
+++++ Y G + G+Q + P ++ V++ L + K+ + +VG+SRTD GV A
Sbjct: 4 RYKIIYEYIGKSFTGFQ-RLKYPVVKLPVQQVLEDSLEKIHGYKIPIVGSSRTDHGVSAV 62
Query: 85 GQVAHFI--TPFSYDGLE-------SIHAALNGLLPPD----IRVREISAAVPEFHARFS 131
GQV+HF T S G+E + A+N + + IR+ + +FH RF+
Sbjct: 63 GQVSHFDVKTRTSKSGIEMPLLSPEELTMAINYNVGKEYLKSIRIIKTEIVDDKFHCRFN 122
Query: 132 AKSKIYHYKIYNDAVMD--PFQHHYAYHSVYK-LNTTLMREAAEYFVGKHDFSAFVNIQR 188
A S+ Y Y++ + P + + V LN MR+A+E F+G HDFS+F + +
Sbjct: 123 ATSRTYLYRVMANCGRKQIPLELLDRVYLVGPILNLDEMRKASEMFIGTHDFSSFRSAKC 182
Query: 189 NDRALNPVKSIFRFDVIEM 207
+ + P++SI + ++
Sbjct: 183 S--STRPIRSISHIKIYDL 199
Score = 42 (19.8 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 213 LEVEGSGFLYRQVRNMV 229
+E++ FL+ QVR MV
Sbjct: 242 IEIKARAFLHNQVRIMV 258
>TAIR|locus:2024397 [details] [associations]
symbol:AT1G09800 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;TAS] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:CP002684 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142 OMA:RHYRYRI
IPI:IPI00517202 RefSeq:NP_172451.2 UniGene:At.477 UniGene:At.49869
ProteinModelPortal:F4I2L0 SMR:F4I2L0 PRIDE:F4I2L0
EnsemblPlants:AT1G09800.1 GeneID:837510 KEGG:ath:AT1G09800
Uniprot:F4I2L0
Length = 372
Score = 172 (65.6 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 53/200 (26%), Positives = 96/200 (48%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
++ + I Y GTR++G Q Q T+ ++++A K + +++ +SRTD GVHA
Sbjct: 56 RYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAF---HKFIGQPVKIFCSSRTDAGVHALS 112
Query: 86 QVAHF------------ITPFSYDGLESIHAALNGLLPP---DIRVREISAAVPEFHARF 130
V H + P G+ + A+N L D+ V ++ +HAR+
Sbjct: 113 NVCHVDVERISKRKPGEVLPPHEPGV--VQRAVNHFLQRKDGDVMVIDVRCVPSNYHARY 170
Query: 131 SAKSKIYHYKIYNDAVMDPF---QHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQ 187
A+ + Y Y++ + + DP + +H +LN M+EA VG HDFS+F
Sbjct: 171 KAQERTYFYRLLSGS--DPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFR--A 226
Query: 188 RNDRALNPVKSIFRFDVIEM 207
+A +P++S+ ++ E+
Sbjct: 227 AGCQAKSPMRSLDELNITEV 246
Score = 42 (19.8 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 219 GFLYRQVRNMVNHSYC 234
GFLY QVR +V C
Sbjct: 315 GFLYHQVRLIVGALKC 330
>MGI|MGI:3047787 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10090
"Mus musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 MGI:MGI:3047787 GO:GO:0003723 GO:GO:0008033
EMBL:AL670236 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
UniGene:Mm.259270 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789
HOGENOM:HOG000248674 HOVERGEN:HBG053770 OMA:WALPADC
OrthoDB:EOG4P5K9S EMBL:AK151452 EMBL:AK160236 IPI:IPI00458175
IPI:IPI00626517 IPI:IPI00875388 RefSeq:NP_001028662.1
ProteinModelPortal:A2ADA5 SMR:A2ADA5 STRING:A2ADA5
PhosphoSite:A2ADA5 PaxDb:A2ADA5 PRIDE:A2ADA5
Ensembl:ENSMUST00000097737 GeneID:433813 KEGG:mmu:433813
UCSC:uc008wfi.1 UCSC:uc012drb.1 GeneTree:ENSGT00510000048520
InParanoid:A2ADA5 NextBio:409016 Bgee:A2ADA5 Genevestigator:A2ADA5
Uniprot:A2ADA5
Length = 291
Score = 174 (66.3 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 72/233 (30%), Positives = 110/233 (47%)
Query: 26 KWRLVIGYDGTRYAGWQ-FQTSPPTIQCI--VEKALIRVTKLEREDLRLVGASRTDTGVH 82
++ + + Y GT + G + +P + + +E+A R+ ++ +R +SRTD GVH
Sbjct: 13 RYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSVD--PVRFTISSRTDAGVH 70
Query: 83 AWGQVAHFI-------TPFSYDGLESIHAALNGLLP-PDIRVREISAAVPEFHARFSAKS 134
A AH +PFS E + ALN L P IRV + +FHAR +A S
Sbjct: 71 ALSNAAHLDIQRRPGQSPFSP---EVVAKALNTHLKHPAIRVLKAFRVPNDFHARHAATS 127
Query: 135 KIYHYKIYNDAV----MDPFQHH--YAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQR 188
+ Y Y++ + F+ + +A + Y L+ M+EAA++ +G HDFSAF +
Sbjct: 128 RTYQYRLATGCSWPNQLPVFEQNVCWALQTEY-LDMAAMQEAAQHLLGTHDFSAFQSA-- 184
Query: 189 NDRALNPVKSIFRFDVI----------EMGALLQ---LEVEGSGFLYRQVRNM 228
N V+++ R V E LQ LE E FLYRQVR M
Sbjct: 185 GSPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSFLYRQVRRM 237
>POMBASE|SPAC25B8.05 [details] [associations]
symbol:SPAC25B8.05 "tRNA-pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPAC25B8.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0003723 GO:GO:0016829 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000199032 OMA:KFSRCGR OrthoDB:EOG46T69C PIR:T50192
RefSeq:NP_594465.1 ProteinModelPortal:Q9UTB3 STRING:Q9UTB3
EnsemblFungi:SPAC25B8.05.1 GeneID:2541578 KEGG:spo:SPAC25B8.05
NextBio:20802672 Uniprot:Q9UTB3
Length = 450
Score = 179 (68.1 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 72/217 (33%), Positives = 98/217 (45%)
Query: 22 FPGFKWRLVIGYDGTRYAGWQFQTSP---PTIQCIVEKALIRVTKL-EREDLRLVGASRT 77
F FK+ Y G Y G +Q P PT++ V +AL+R + + RT
Sbjct: 93 FVAFKF----AYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCSFSRCGRT 148
Query: 78 DTGVHAWGQVAHFITPFSYDGLESIHA-ALNGLLPPDIRVREISAAVPE-FHARFSAKSK 135
D GV A GQV S + I+ LN LLP DIR+ A PE F ARFS K +
Sbjct: 149 DKGVSAMGQVISLNVRHS-ERRPIIYCDVLNRLLPADIRITGY-AFPPEGFDARFSCKQR 206
Query: 136 IYHYKIYNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNP 195
HYK F Y S L+ M EAA ++G+HDF F I + + N
Sbjct: 207 --HYKYL-------FTKDYPGGS---LDIDRMNEAAALYLGEHDFRNFCKIDASKQITNY 254
Query: 196 VKSIFRFDVIEMG---ALLQLEVEGSGFLYRQVRNMV 229
+ I VI + L +++G+ FL+ QVR M+
Sbjct: 255 HRRILSSKVICIDPSTGLYAFDLQGTAFLWHQVRCMM 291
>CGD|CAL0000624 [details] [associations]
symbol:orf19.6297 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 CGD:CAL0000624 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:AACQ01000212
EMBL:AACQ01000211 RefSeq:XP_711136.1 RefSeq:XP_711154.1
ProteinModelPortal:Q59N30 STRING:Q59N30 GeneID:3647251
GeneID:3647265 KEGG:cal:CaO19.13676 KEGG:cal:CaO19.6297
Uniprot:Q59N30
Length = 489
Score = 179 (68.1 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 74/251 (29%), Positives = 110/251 (43%)
Query: 6 GLEGTNNTVKPPTDDSFPGFKW-----RLV---IGYDGTRYAGWQFQTSP---PTIQCIV 54
G + ++KP F W R V Y G Y G Q P PT++ +
Sbjct: 103 GETSSQRSIKPVKKQKKKEFDWSKQNMRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVF 162
Query: 55 EKALIRVTKLER--EDLRLVGASRTDTGVHAWGQVAHF-----IT------PFSYDGLES 101
KAL +V ++ E+++ RTD GV A QV IT P +D LE
Sbjct: 163 LKALAKVKLIKEPIEEVKFSRCGRTDKGVSAMNQVISINVRSNITLENQSNP-EFDDLEI 221
Query: 102 IH-AALNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYNDAVMDPFQHHYAYHSV 159
+ + LN LP DI+V I P +F ARFS S+ HY+ Y +
Sbjct: 222 DYISVLNANLPSDIKVHSICLRPPPDFDARFSCLSR--HYR-------------YIFRK- 265
Query: 160 YKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEMGA-LLQLEVEGS 218
L+ LM + A+ + G HDF F + + + N V+ I++ +I + +++GS
Sbjct: 266 QDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITNFVREIYQSQIIHLHQDYYCFDLKGS 325
Query: 219 GFLYRQVRNMV 229
FL+ QVR MV
Sbjct: 326 AFLWHQVRCMV 336
>TIGR_CMR|CJE_0914 [details] [associations]
symbol:CJE_0914 "tRNA pseudouridine synthase A"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 RefSeq:YP_178916.1
ProteinModelPortal:Q5HUW9 STRING:Q5HUW9 GeneID:3231427
KEGG:cjr:CJE0914 PATRIC:20043595 HOGENOM:HOG000248673 OMA:NYCYEYL
BioCyc:CJEJ195099:GJC0-934-MONOMER Uniprot:Q5HUW9
Length = 240
Score = 170 (64.9 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 56/201 (27%), Positives = 84/201 (41%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
K +++ YDGT + G Q +Q + AL + L+ ASRTD GVHA
Sbjct: 2 KIKIIFSYDGTAFLGSATQPHKKGVQDALSGALSHLGIFSP----LLMASRTDKGVHASY 57
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
VA + LE + LN P I +++I +F RF KS+ Y Y I++ +
Sbjct: 58 AVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRY-IFSHS 116
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
PF Y H K + E +FVGK D F +++ ++ IF
Sbjct: 117 SYSPFMASYV-HFYPKFDLDKANELLGFFVGKKDLKFFCKSGGDNKTT--LREIFIARAY 173
Query: 206 EMGALLQLEVEGSGFLYRQVR 226
+ +GFL Q+R
Sbjct: 174 AYKDFSIFHFKANGFLRGQIR 194
>UNIPROTKB|F1RJE9 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9823
"Sus scrofa" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:FP102596
Ensembl:ENSSSCT00000003707 Uniprot:F1RJE9
Length = 302
Score = 163 (62.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 70/225 (31%), Positives = 101/225 (44%)
Query: 33 YDGTRYAGWQFQTSPPT---IQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 89
Y GT + G P +Q +E+A R+ + ++ +SRTD GVHA AH
Sbjct: 20 YLGTDFNGVAAVRGPQHAVGVQNYLEEAAERLNSVV--PVKFTISSRTDAGVHALSNAAH 77
Query: 90 FIT-------PFSYDGLESIHAALNG-LLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 141
PFS + L ALN L P IRV + FHAR++A S+ Y Y++
Sbjct: 78 LDIQRRSGQPPFSPEVLTE---ALNTHLRHPAIRVLQAFRVPSHFHARYAATSRTYLYRL 134
Query: 142 YNDAV----MDPFQHHYAYH-SVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPV 196
+ F+ + + L+ M+EAA++ +G HDFSAF + A +PV
Sbjct: 135 ATGCPRPDHLSVFERNRCWPLRADCLDVAAMQEAAQHLLGTHDFSAFQST--GSPATSPV 192
Query: 197 KSIFRFDVI-EMGALL------------QLEVEGSGFLYRQVRNM 228
+++ R V E + L LE E FLYRQVR M
Sbjct: 193 RTLRRASVSPEPSSPLVLPGESRGLRFWSLEFESQSFLYRQVRRM 237
>UNIPROTKB|A6QP68 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9913
"Bos taurus" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000248674 HOVERGEN:HBG053770
OMA:WALPADC OrthoDB:EOG4P5K9S GeneTree:ENSGT00510000048520
EMBL:DAAA02043243 EMBL:BC149176 IPI:IPI00698369 UniGene:Bt.62155
STRING:A6QP68 Ensembl:ENSBTAT00000044945 InParanoid:A6QP68
Uniprot:A6QP68
Length = 312
Score = 160 (61.4 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 64/205 (31%), Positives = 96/205 (46%)
Query: 50 IQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHF-------ITPFSYDGLESI 102
+Q +E+A R+ + ++ +SRTD GVHA AH + PFS + L
Sbjct: 61 VQNYLEEAAERLNSVM--PVKFTISSRTDAGVHALSNAAHLDIQRRSDLPPFSPEVLTE- 117
Query: 103 HAALNGLLP-PDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV----MDPFQHHYAYH 157
ALN L P IRV + FHAR +A S+ Y Y++ + F+ + +
Sbjct: 118 --ALNTHLKHPAIRVLQAFRVPSHFHARHAAISRTYLYRLATGCPRPDRLPVFERNRCWA 175
Query: 158 -SVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFR----------FDVIE 206
L+ M+EAA++ +G HDFSAF + A +PV+++ R F + E
Sbjct: 176 LQADCLDVAAMQEAAQHLLGTHDFSAFQSA--GSPASSPVRTLRRASVSPDPASPFVLPE 233
Query: 207 MGALLQ---LEVEGSGFLYRQVRNM 228
LQ +E E FLY+QVR M
Sbjct: 234 ESRQLQFWSMEFESQSFLYKQVRRM 258
>UNIPROTKB|Q8N0Z8 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase-like 1"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 EMBL:AL139287
EMBL:CH471183 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 EMBL:AK075292 EMBL:AK298218
EMBL:BC034304 IPI:IPI00166125 IPI:IPI00915388 RefSeq:NP_699170.1
UniGene:Hs.400659 ProteinModelPortal:Q8N0Z8 SMR:Q8N0Z8
STRING:Q8N0Z8 PhosphoSite:Q8N0Z8 DMDM:52783232 PRIDE:Q8N0Z8
DNASU:126789 Ensembl:ENST00000379031 GeneID:126789 KEGG:hsa:126789
UCSC:uc001aed.3 UCSC:uc010nyi.2 CTD:126789 GeneCards:GC01P001233
HGNC:HGNC:26914 HPA:HPA032057 neXtProt:NX_Q8N0Z8
PharmGKB:PA134947837 HOGENOM:HOG000248674 HOVERGEN:HBG053770
InParanoid:Q8N0Z8 OMA:WALPADC OrthoDB:EOG4P5K9S PhylomeDB:Q8N0Z8
ChiTaRS:PUSL1 GenomeRNAi:126789 NextBio:81916 Bgee:Q8N0Z8
CleanEx:HS_PUSL1 Genevestigator:Q8N0Z8 GermOnline:ENSG00000169972
Uniprot:Q8N0Z8
Length = 303
Score = 159 (61.0 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 65/205 (31%), Positives = 94/205 (45%)
Query: 50 IQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFIT-------PFSYDGLESI 102
+Q +E+A R+ +E +R +SRTD GVHA AH PF + L
Sbjct: 40 VQNYLEEAAERLNSVE--PVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAE- 96
Query: 103 HAALNG-LLPPDIRVREISAAVPEFHARFSAKSKIYHYKI----YNDAVMDPFQHHYAYH 157
ALN L P IRV +FHAR +A S+ Y Y++ + + F+ + +
Sbjct: 97 --ALNTHLRHPAIRVLRAFRVPSDFHARHAATSRTYLYRLATGCHRRDELPVFERNLCWT 154
Query: 158 SVYK-LNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI----------E 206
L+ M+EAA++ +G HDFSAF + +PV+++ R V E
Sbjct: 155 LPADCLDMVAMQEAAQHLLGTHDFSAFQSA--GSPVPSPVRTLRRVSVSPGQASPLVTPE 212
Query: 207 MGALLQ---LEVEGSGFLYRQVRNM 228
L+ LE E FLYRQVR M
Sbjct: 213 ESRKLRFWNLEFESQSFLYRQVRRM 237
>DICTYBASE|DDB_G0288909 [details] [associations]
symbol:pus3 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004730 "pseudouridylate
synthase activity" evidence=ISS] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0288909 GO:GO:0005634 GO:GO:0005737
EMBL:AAFI02000126 GenomeReviews:CM000154_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008033 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0004730 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
RefSeq:XP_636482.1 ProteinModelPortal:Q54I97 STRING:Q54I97
EnsemblProtists:DDB0231223 GeneID:8626865 KEGG:ddi:DDB_G0288909
InParanoid:Q54I97 OMA:PPYEMAS Uniprot:Q54I97
Length = 491
Score = 140 (54.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 43/127 (33%), Positives = 70/127 (55%)
Query: 106 LNGLLPPDIRVREISAAVP-EFHARFSAKSKIYHYKIYNDAVMDPFQHHYAYHSVYKLNT 164
LNG+LPP+IR+ A VP F+ARFS S+ Y Y +N +D LN
Sbjct: 215 LNGVLPPEIRILAW-APVPFHFNARFSTLSRTYKY-FFNPNGLD-------------LN- 258
Query: 165 TLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDV--IEMGALLQLEVEGSGFLY 222
LM+EA++ ++G+H++ F I N ++ ++ I +FD+ +E L ++G FL+
Sbjct: 259 -LMKEASKLYLGEHNYINFCKIDVNVKSF--MRVILQFDIEKVENSELYVATIKGFAFLW 315
Query: 223 RQVRNMV 229
Q+R M+
Sbjct: 316 HQIRCMM 322
Score = 61 (26.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 38 YAGWQF------QTSPPTIQCIVEKALIRVTKL-EREDLRLVGASRTDTGVHAWGQV 87
Y GW F S TI+ + KA ++ + + + + + RTD GV A+GQV
Sbjct: 93 YVGWPFFGFAAQDCSEETIENYLIKAFLKTSLIPDIKTANYFKSGRTDKGVSAYGQV 149
>RGD|1559560 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 RGD:1559560 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00779525 Ensembl:ENSRNOT00000055334 ArrayExpress:F1M9T7
Uniprot:F1M9T7
Length = 278
Score = 149 (57.5 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 61/184 (33%), Positives = 85/184 (46%)
Query: 67 EDLRLVGASRTDTGVHAWGQVAHFIT-------PFSYDGLESIHAALNGLLP-PDIRVRE 118
E +R +SRTD GVHA AH PFS E + ALN L P IRV +
Sbjct: 20 EPVRFTISSRTDAGVHALSNAAHLDIQRRPGRPPFSP---EIVTKALNTHLKHPAIRVLK 76
Query: 119 ISAAVPEFHARFSAKSKIYHYKIYNDAV----MDPFQHH--YAYHSVYKLNTTLMREAAE 172
+FHAR +A S+ Y Y++ + F+ + ++ + Y L+ M+EAA+
Sbjct: 77 AFRVPNDFHARHAATSRTYLYRLATGCSGPNQLPVFEQNVCWSLQTEY-LDIAAMQEAAQ 135
Query: 173 YFVGKHDFSAFVN----IQRNDRALNPVK----SIFRFDVIEMGALLQ---LEVEGSGFL 221
+ +G HDFSAF + + R L V F + + LQ LE E FL
Sbjct: 136 HLLGTHDFSAFQSAGSPVPHAVRTLRRVSVSPGPASLFVLPQESRRLQFWTLEFESQSFL 195
Query: 222 YRQV 225
YRQV
Sbjct: 196 YRQV 199
>WB|WBGene00006473 [details] [associations]
symbol:tag-124 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:Z47075 RefSeq:NP_496062.3
GeneID:174509 KEGG:cel:CELE_E02H1.3 CTD:174509 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
OMA:NHAVKTH GeneTree:ENSGT00510000047444 PIR:T20413
ProteinModelPortal:Q09524 SMR:Q09524 STRING:Q09524
EnsemblMetazoa:E02H1.3 UCSC:E02H1.3.1 WormBase:E02H1.3
InParanoid:Q09524 NextBio:884332 Uniprot:Q09524
Length = 402
Score = 139 (54.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 51/165 (30%), Positives = 74/165 (44%)
Query: 78 DTGVHAWGQVA--HFITPFSYDGLESIHAA-LNGLLPPDIRVREISAAVPEFHARFSAKS 134
D+GV W H + G E + LNG+LP IRV + F+ARF
Sbjct: 106 DSGVF-WSDSTQEHQKVDYKASGEELPYVKMLNGVLPKTIRVFAWAPVAQTFNARFDCNR 164
Query: 135 KIYHYKIYNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRAL- 193
+ Y Y A D LN MR+ AE VG+HDFS F I N++ L
Sbjct: 165 RTYKYSF---AKAD-------------LNLEKMRQGAELLVGEHDFSNFCQIDMNEKRLL 208
Query: 194 -NPVKSIFRFDVIE--------MGALLQLEVEGSGFLYRQVRNMV 229
+ V+ ++ V + M ++++L V GSGFL+ +R +V
Sbjct: 209 QSYVRKVYEVKVEQVSTHPENDMYSMVELTVSGSGFLWHMIRYIV 253
Score = 48 (22.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 38 YAGWQFQ--TSPPTIQCIVE----KALIRVTKLE---REDLRLVGASRTDTGVHAWGQVA 88
Y GW+ P Q VE +ALI+ +E + D G RTD GV A+ Q A
Sbjct: 38 YLGWEHDGLVQQPHTQNTVENHIMQALIKTHLIEDWTKCDFSRCG--RTDKGVSAFKQTA 95
Query: 89 HFI 91
+
Sbjct: 96 AMV 98
>UNIPROTKB|F1PXJ5 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 OMA:WALPADC GeneTree:ENSGT00510000048520
EMBL:AAEX03003844 Ensembl:ENSCAFT00000030633 Uniprot:F1PXJ5
Length = 303
Score = 147 (56.8 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 59/185 (31%), Positives = 86/185 (46%)
Query: 69 LRLVGASRTDTGVHAWGQVAHFIT-------PFSYDGLESIHAALNG-LLPPDIRVREIS 120
+R +SRTD GVHA AH PFS + L ALN + P IRV +
Sbjct: 57 VRFTISSRTDAGVHALSNAAHLDVQRRSGQPPFSPEVLAE---ALNAHVRHPAIRVLQAF 113
Query: 121 AAVPEFHARFSAKSKIYHYKI----YNDAVMDPFQHHYAYH-SVYKLNTTLMREAAEYFV 175
+FHAR +A S+ Y Y++ + + F+ + + L+ M+EAA++ +
Sbjct: 114 RVPSDFHARHAATSRTYLYRLVTGCHRPDQLSVFERNRCWPLRADCLDVDAMQEAAQHLL 173
Query: 176 GKHDFSAFVNIQRNDRALNPVKSIFRFDVI-EMGA---LLQ--------LEVEGSGFLYR 223
G HDF AF + + V+++ R V + G+ L Q LE E FLYR
Sbjct: 174 GTHDFRAFQSA--GSPTTSSVRTLRRASVSPDPGSPFVLAQEKRLHFWNLEFESRSFLYR 231
Query: 224 QVRNM 228
QVR M
Sbjct: 232 QVRRM 236
>UNIPROTKB|J9P592 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 GeneTree:ENSGT00510000048520 EMBL:AAEX03003844
Ensembl:ENSCAFT00000048781 Uniprot:J9P592
Length = 305
Score = 147 (56.8 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 59/185 (31%), Positives = 86/185 (46%)
Query: 69 LRLVGASRTDTGVHAWGQVAHFIT-------PFSYDGLESIHAALNG-LLPPDIRVREIS 120
+R +SRTD GVHA AH PFS + L ALN + P IRV +
Sbjct: 55 VRFTISSRTDAGVHALSNAAHLDVQRRSGQPPFSPEVLAE---ALNAHVRHPAIRVLQAF 111
Query: 121 AAVPEFHARFSAKSKIYHYKI----YNDAVMDPFQHHYAYH-SVYKLNTTLMREAAEYFV 175
+FHAR +A S+ Y Y++ + + F+ + + L+ M+EAA++ +
Sbjct: 112 RVPSDFHARHAATSRTYLYRLVTGCHRPDQLSVFERNRCWPLRADCLDVDAMQEAAQHLL 171
Query: 176 GKHDFSAFVNIQRNDRALNPVKSIFRFDVI-EMGA---LLQ--------LEVEGSGFLYR 223
G HDF AF + + V+++ R V + G+ L Q LE E FLYR
Sbjct: 172 GTHDFRAFQSA--GSPTTSSVRTLRRASVSPDPGSPFVLAQEKRLHFWNLEFESRSFLYR 229
Query: 224 QVRNM 228
QVR M
Sbjct: 230 QVRRM 234
>UNIPROTKB|F1P3X5 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AADN02042043 EMBL:AADN02042044
IPI:IPI00588906 Ensembl:ENSGALT00000001417 Uniprot:F1P3X5
Length = 379
Score = 125 (49.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 47/146 (32%), Positives = 63/146 (43%)
Query: 95 SYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQHHY 154
S + L H LN +LPPDIRV + P+F ARFS + Y Y
Sbjct: 152 SEEELRYTHI-LNRVLPPDIRVLAWAPVEPDFSARFSCLKRTYRY--------------- 195
Query: 155 AYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI--EMGA--- 209
+ L+ LM AA+ +VG HDF + + +N ++I V + GA
Sbjct: 196 -FFPCADLDVALMHTAAQRYVGTHDFRNLCKMDVANGVINFQRTILSAQVTWADGGAESG 254
Query: 210 ------LLQLEVEGSGFLYRQVRNMV 229
L Q EV G FLY QVR M+
Sbjct: 255 LRDPFRLCQFEVTGQAFLYHQVRCMM 280
Score = 63 (27.2 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 17 PTDDSFPGFKW-RLVIGYDGTRYAGWQFQTSPPTIQCIVEKAL--IRVTKL--EREDLRL 71
P D S G + L I Y G Y G+ Q + T I EK ++ T+L +R+
Sbjct: 50 PFDFSAHGRRHVALRIAYLGWGYQGFASQEN--TSNTIEEKLFEALKKTRLVDDRQTSNY 107
Query: 72 VGASRTDTGVHAWGQV 87
RTD GV A+GQV
Sbjct: 108 HRCGRTDKGVSAFGQV 123
>POMBASE|SPCC126.03 [details] [associations]
symbol:pus1 "tRNA pseudouridine synthase Lsp1"
species:4896 "Schizosaccharomyces pombe" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IGI;IDA] [GO:0006400 "tRNA
modification" evidence=IDA] [GO:0009982 "pseudouridine synthase
activity" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PomBase:SPCC126.03 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0006400
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AJ251329
PIR:T40907 RefSeq:NP_588446.1 ProteinModelPortal:O94396
STRING:O94396 EnsemblFungi:SPCC126.03.1 GeneID:2539082
KEGG:spo:SPCC126.03 eggNOG:COG0101 HOGENOM:HOG000213984 KO:K06173
OMA:IRKMISM OrthoDB:EOG48KVMJ NextBio:20800254 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Uniprot:O94396
Length = 534
Score = 128 (50.1 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 40/133 (30%), Positives = 63/133 (47%)
Query: 23 PGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIR---VTKLERED---LRLVGASR 76
P K ++GY G+ Y G Q TI+ + A ++ V+ +D + L A+R
Sbjct: 42 PKRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALARAAR 101
Query: 77 TDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKI 136
TD GVHA G V + D E + +N LPP IR+ ++ + F+ R +S+I
Sbjct: 102 TDKGVHAAGNVIS-LKLIMED--EKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCESRI 158
Query: 137 YHYKIYNDAVMDP 149
Y Y + A + P
Sbjct: 159 YEYMVPTYAFVPP 171
Score = 62 (26.9 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 165 TLMREAAEYFVGKHDFSAFVNIQR-NDRALNPV-KSIFRFDVIEMGAL--LQLEVEGSGF 220
+++RE +VG H+F F Q + + N V +S D +G + +V G F
Sbjct: 322 SVIRETLNQYVGVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGDTEWISCKVHGQSF 381
Query: 221 LYRQVRNMV 229
+ Q+R M+
Sbjct: 382 MLHQIRKMI 390
>ASPGD|ASPL0000001573 [details] [associations]
symbol:AN6165 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0005634 "nucleus" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 EMBL:BN001301 EMBL:AACD01000105
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
HOGENOM:HOG000213984 KO:K06173 OMA:IRKMISM OrthoDB:EOG48KVMJ
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_663769.1 ProteinModelPortal:Q5AZW5
STRING:Q5AZW5 EnsemblFungi:CADANIAT00006845 GeneID:2871138
KEGG:ani:AN6165.2 Uniprot:Q5AZW5
Length = 574
Score = 128 (50.1 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 44/138 (31%), Positives = 62/138 (44%)
Query: 23 PGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIR---VTKLEREDLR---LVGASR 76
P K ++IGY GT Y G Q T+ TI+ + A + ++K D + LV +R
Sbjct: 77 PKKKVAVLIGYSGTGYKGMQLSTTEKTIEGELFTAFVAAGAISKANAADPKKSSLVRCAR 136
Query: 77 TDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKI 136
TD GVHA G + + D I +N L P IRV I A F + S+I
Sbjct: 137 TDKGVHAAGNIVS-LKLIVED--PDIVQKINDHLSPQIRVWGILVANKSFSSYQMCDSRI 193
Query: 137 YHYKIYNDAVMDPFQHHY 154
Y Y I + + P + Y
Sbjct: 194 YEYLIPSHCFLPPHPNTY 211
Score = 61 (26.5 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 167 MREAAEYFVGKHDFSAFVNIQRNDR---ALNPVKSIFRFD----VIEMGALLQLEVEGSG 219
+++A + +VG +F + IQ+ R A +KS F+ + +I+ L L+V G
Sbjct: 347 IQQALDKYVGTKNFYNYT-IQKQYRDPSAKRHIKS-FKLNPEPIIIDGTEWLSLKVHGQS 404
Query: 220 FLYRQVRNMV 229
F+ Q+R MV
Sbjct: 405 FMMHQIRKMV 414
>SGD|S000001895 [details] [associations]
symbol:DEG1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000001895 GO:GO:0005634 GO:GO:0005737 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 BRENDA:5.4.99.12 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
GeneTree:ENSGT00510000047444 EMBL:AY693197 PIR:S14145
RefSeq:NP_116655.1 ProteinModelPortal:P31115 SMR:P31115
DIP:DIP-5151N IntAct:P31115 MINT:MINT-531752 STRING:P31115
PaxDb:P31115 PeptideAtlas:P31115 PRIDE:P31115 EnsemblFungi:YFL001W
GeneID:850550 KEGG:sce:YFL001W CYGD:YFL001w OMA:KFSRCGR
OrthoDB:EOG46T69C NextBio:966327 Genevestigator:P31115
GermOnline:YFL001W Uniprot:P31115
Length = 442
Score = 145 (56.1 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 64/221 (28%), Positives = 93/221 (42%)
Query: 29 LVIGYDGTRYAGWQFQ---TSPPTIQCIVEKALIR---VTKLEREDLRLVGASRTDTGVH 82
L Y G Y G Q T PT++ + +A+ + V + +D + RTD GV
Sbjct: 96 LRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVS 155
Query: 83 AWGQVAHF-----ITPFSY-----DGLES--IHAALNGLLPPDIRVREISAAVP-EFHAR 129
A QV +T D E +H LN LLP DIR+ + P F AR
Sbjct: 156 AMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHV-LNQLLPDDIRISAVCLRPPPNFDAR 214
Query: 130 FSAKSKIYHYKIYNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRN 189
FS + Y Y I+N LN M +AA YFVG+ DF F + +
Sbjct: 215 FSCVHRHYKY-IFNGK---------------NLNIEKMSKAASYFVGERDFRNFCKLDGS 258
Query: 190 DRALNPVKSIFRFDVIEMGALLQ-LEVEGSGFLYRQVRNMV 229
+ N ++I ++ + ++ GS FL+ QVR M+
Sbjct: 259 KQITNFKRTIISSKILPLSETFYCFDLVGSAFLWHQVRCMM 299
>DICTYBASE|DDB_G0290987 [details] [associations]
symbol:pus1 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0290987
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AAFI02000174 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_635437.1 ProteinModelPortal:Q54FA0
EnsemblProtists:DDB0231224 GeneID:8627937 KEGG:ddi:DDB_G0290987
InParanoid:Q54FA0 OMA:VEMVSIN Uniprot:Q54FA0
Length = 596
Score = 130 (50.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 41/134 (30%), Positives = 59/134 (44%)
Query: 12 NTVKPPTDDSFPGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRL 71
N K TD+S K +++GY GT YAG Q T++ +E AL R + +++
Sbjct: 128 NKTKITTDESRKK-KVAIILGYSGTNYAGMQKNPGLKTVEEELEHALFRTGGISPDNMYY 186
Query: 72 ------VGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPE 125
+ +RTD GV A V E + ALN LP DI V I
Sbjct: 187 QQKVDWIRCARTDKGVSAIRNVVSLKMEMGPPDFEGMKIALNKELPKDITVFHIMRVNNS 246
Query: 126 FHARFSAKSKIYHY 139
FHA+ + ++ Y Y
Sbjct: 247 FHAKNAVDARSYIY 260
Score = 57 (25.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 14/69 (20%), Positives = 35/69 (50%)
Query: 165 TLMREAAEYFVGKHDFSAFVNIQR-NDRAL-NPVKSIFRFD--VIEMGALLQLEVEGSGF 220
+++ + +++G H F + + + ND ++ + S + V+E ++ + V G F
Sbjct: 302 SILNKVLSFYLGNHRFHNYTSRKESNDVSVFRKIHSFVCSEPFVLEGVEMVSINVVGESF 361
Query: 221 LYRQVRNMV 229
+ Q+R M+
Sbjct: 362 MLHQIRKMI 370
>SGD|S000006133 [details] [associations]
symbol:PUS1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IPI]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IMP]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 SGD:S000006133 GO:GO:0005634
GO:GO:0003723 EMBL:BK006949 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031120 GO:GO:0031119 eggNOG:COG0101 HOGENOM:HOG000213984
KO:K06173 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:X80673 EMBL:Z73568
PIR:S65231 RefSeq:NP_015112.1 ProteinModelPortal:Q12211
DIP:DIP-5344N IntAct:Q12211 MINT:MINT-513680 STRING:Q12211
PaxDb:Q12211 PeptideAtlas:Q12211 EnsemblFungi:YPL212C GeneID:855889
KEGG:sce:YPL212C CYGD:YPL212c GeneTree:ENSGT00510000047706
OMA:TEWISIT NextBio:980559 Genevestigator:Q12211 GermOnline:YPL212C
Uniprot:Q12211
Length = 544
Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 46/156 (29%), Positives = 69/156 (44%)
Query: 17 PTDDSFPGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIR---VTKLEREDLRLVG 73
P + P K +++GY GT Y G Q+ PTI+ + KA + ++K DL+ G
Sbjct: 67 PKEPRLPKRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNG 126
Query: 74 ---ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARF 130
A+RTD GVHA G + + D I +N LP IRV +I F R
Sbjct: 127 FMRAARTDKGVHAGGNLIS-LKMIIED--PDIKQKINEKLPEGIRVWDIERVNKAFDCRK 183
Query: 131 SAKSKIYHYKIYNDAVMDPFQHHYAYHSVYKLNTTL 166
S+ Y Y + +++ P Y + + T L
Sbjct: 184 MCSSRWYEYLLPTYSLIGPKPGSILYRDIEESKTEL 219
>UNIPROTKB|F1LXZ7 [details] [associations]
symbol:Pusl1 "tRNA pseudouridine synthase" species:10116
"Rattus norvegicus" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 RGD:1559560 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00359178 Ensembl:ENSRNOT00000036307 ArrayExpress:F1LXZ7
Uniprot:F1LXZ7
Length = 217
Score = 132 (51.5 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 57/174 (32%), Positives = 79/174 (45%)
Query: 80 GVHAWGQVAHFIT-------PFSYDGLESIHAALNGLLP-PDIRVREISAAVPEFHARFS 131
GVHA AH PFS E + ALN L P IRV + +FHAR +
Sbjct: 2 GVHALSNAAHLDIQRRPGRPPFSP---EIVTKALNTHLKHPAIRVLKAFRVPNDFHARHA 58
Query: 132 AKSKIYHYKIYNDAV----MDPFQHH--YAYHSVYKLNTTLMREAAEYFVGKHDFSAFVN 185
A S+ Y Y++ + F+ + ++ + Y L+ M+EAA++ +G HDFSAF +
Sbjct: 59 ATSRTYLYRLATGCSGPNQLPVFEQNVCWSLQTEY-LDIAAMQEAAQHLLGTHDFSAFQS 117
Query: 186 ----IQRNDRALNPVK----SIFRFDVIEMGALLQ---LEVEGSGFLYRQVRNM 228
+ R L V F + + LQ LE E FLYRQVR M
Sbjct: 118 AGSPVPHAVRTLRRVSVSPGPASLFVLPQESRRLQFWTLEFESQSFLYRQVRRM 171
>UNIPROTKB|E2RGS6 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AAEX03003383 RefSeq:XP_536533.1
ProteinModelPortal:E2RGS6 Ensembl:ENSCAFT00000016731 GeneID:479397
KEGG:cfa:479397 NextBio:20854586 Uniprot:E2RGS6
Length = 480
Score = 114 (45.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 39/127 (30%), Positives = 56/127 (44%)
Query: 106 LNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQHHYA---YHSVYKL 162
LN +LPPDIRV + P F ARFS + Y Y + A +D +YA Y +
Sbjct: 163 LNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRY-FFPRADLDIITMNYAAQKYVGTHDF 221
Query: 163 NTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEMGALLQLEVEGSGFLY 222
+ A + F ++ ++L+ K ++ E L Q EV G FLY
Sbjct: 222 RNLCKMDVANGVINFQRTVLFAQVELVGQSLD--KEQWQ----EPFQLCQFEVVGQAFLY 275
Query: 223 RQVRNMV 229
QVR M+
Sbjct: 276 HQVRCMM 282
Score = 61 (26.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 23/63 (36%), Positives = 28/63 (44%)
Query: 29 LVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVG----ASRTDTGVHAW 84
L I Y G Y G+ Q + T I EK +TK + R RTD GV A+
Sbjct: 66 LKIAYLGWGYQGFASQEN--TNNTIEEKLFDALTKTRLVESRQTSNYHRCGRTDKGVSAF 123
Query: 85 GQV 87
GQV
Sbjct: 124 GQV 126
Score = 40 (19.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 54 VEKALIRVTKLEREDLRL 71
+EK L RV +LE E RL
Sbjct: 11 IEKLLKRVQELEEEVQRL 28
Score = 40 (19.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 3 GVVGLEGTNNTVKPPTDDSFPGFKWRLVIGYDGTRY 38
G E TNNT++ D+ K RLV + Y
Sbjct: 77 GFASQENTNNTIEEKLFDALT--KTRLVESRQTSNY 110
>UNIPROTKB|F1RFR2 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
OMA:CDARTYF EMBL:CU469318 Ensembl:ENSSSCT00000010680 Uniprot:F1RFR2
Length = 433
Score = 131 (51.2 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 63/225 (28%), Positives = 95/225 (42%)
Query: 23 PGFKWRLVIGYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 73
P K L++ Y G Y G Q TI+ + AL+R + + ED+R +
Sbjct: 88 PKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQR 147
Query: 74 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 133
+RTD GV A GQV D LE I N LP IR+ + F+++
Sbjct: 148 CARTDKGVSAAGQVVSLKVWLIDDILEKI----NSHLPSHIRILGLKRVTGGFNSKNKCD 203
Query: 134 SKIYHYKIYNDAVMDPFQH--HYAYHSVYKLNT-TLMR--EAAEYFVGKHDFSAFVNIQ- 187
++ Y Y + A F H H Y+L+T TL R + G H+F F + +
Sbjct: 204 ARTYFYMLPTFA----FAHKDHDVQDETYRLSTETLQRVNRLLACYKGTHNFHNFTSQKG 259
Query: 188 -RNDRALNPVKSIFRFD--VIEMGALLQLEVEGSGFLYRQVRNMV 229
R A + +F + V E ++V+G F+ Q+R MV
Sbjct: 260 PREPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMV 304
>FB|FBgn0038811 [details] [associations]
symbol:CG4159 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE014297 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
RefSeq:NP_001163664.1 UniGene:Dm.27944 ProteinModelPortal:E1JIR1
SMR:E1JIR1 EnsemblMetazoa:FBtr0302323 GeneID:42440
KEGG:dme:Dmel_CG4159 FlyBase:FBgn0038811 PhylomeDB:E1JIR1
GenomeRNAi:42440 NextBio:828799 Bgee:E1JIR1 Uniprot:E1JIR1
Length = 442
Score = 131 (51.2 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 59/239 (24%), Positives = 102/239 (42%)
Query: 8 EGTNNTVKPPTD--DSFPGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIR---VT 62
+ N + P D D K +++ Y G Y G Q TI+ + KA+++ +T
Sbjct: 83 DAANGVKRAPFDPADRIKRKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWIT 142
Query: 63 KLEREDLRLV---GASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREI 119
+ E +++ A+RTD GV A QV P D LE A N LP IR+ +
Sbjct: 143 EDSFEQIQISCFQRAARTDKGVSAARQVCSVKLPEELD-LE----AFNADLPQQIRLFGV 197
Query: 120 SAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQHHYA-YHSVYKLNTTLM---REAAEYFV 175
F+A+ ++ Y Y + A PF+ H ++++ L+ +E + +
Sbjct: 198 ERVTKGFNAKDQCNARTYTYTLPTVAFA-PFEEKVDDVHDTFRISPELLQKVKETLKLYE 256
Query: 176 GKHDFSAFVNIQR-----NDRALNPVKSIFRFDVIEMGALLQLEVEGSGFLYRQVRNMV 229
G +F F + + + R + S F + + L+V+G F+ Q+R MV
Sbjct: 257 GTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMV 315
>SGD|S000003031 [details] [associations]
symbol:PUS2 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IGI;IMP]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IGI;IMP] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000003031 GO:GO:0005739 EMBL:BK006941
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
RefSeq:NP_011452.4 GeneID:852817 KEGG:sce:YGL063W KO:K15452
RefSeq:NP_011456.5 GeneID:852821 KEGG:sce:YGL059W eggNOG:COG0101
HOGENOM:HOG000213984 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:X80674 EMBL:Z72585 PIR:S64067
ProteinModelPortal:P53167 SMR:P53167 DIP:DIP-5022N MINT:MINT-499274
STRING:P53167 EnsemblFungi:YGL063W CYGD:YGL063w OMA:CFISSES
BioCyc:MetaCyc:MONOMER-16706 NextBio:972357 Genevestigator:P53167
GermOnline:YGL063W Uniprot:P53167
Length = 370
Score = 118 (46.6 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 38/127 (29%), Positives = 58/127 (45%)
Query: 29 LVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDL------RLVGASRTDTGVH 82
+++GY G+ Y G Q+ TI+ + L V + E+ + A+RTD GVH
Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60
Query: 83 AWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY 142
A + D + A LN LPP+IRV I +F+AR + S+ Y Y I
Sbjct: 61 AMLNLLSLKITLREDTV----AKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIP 116
Query: 143 NDAVMDP 149
++ P
Sbjct: 117 EFILIGP 123
Score = 49 (22.3 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 169 EAA-EYFVGKHDFSAFVN--IQRNDRALNPVKSIFRFDVIEMGALLQLEVEGSGFLYRQV 225
EAA + +VG H+F F + + A +K + G + + + G F+ Q+
Sbjct: 204 EAAMQEYVGTHNFHNFTTGKLWGDPSAQRHIKKVV-VSQASPGWIC-VRIHGQSFMLHQI 261
Query: 226 RNMV 229
R MV
Sbjct: 262 RRMV 265
>UNIPROTKB|Q9BZE2 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:AF325689 EMBL:AK055702
EMBL:AK314251 EMBL:BC004822 EMBL:BC013427 IPI:IPI00306260
RefSeq:NP_112597.3 UniGene:Hs.660922 ProteinModelPortal:Q9BZE2
SMR:Q9BZE2 STRING:Q9BZE2 PhosphoSite:Q9BZE2 DMDM:126302589
PaxDb:Q9BZE2 PRIDE:Q9BZE2 DNASU:83480 Ensembl:ENST00000227474
Ensembl:ENST00000530811 GeneID:83480 KEGG:hsa:83480 UCSC:uc001qcy.2
GeneCards:GC11M125763 H-InvDB:HIX0010246 HGNC:HGNC:25461
HPA:HPA038040 neXtProt:NX_Q9BZE2 PharmGKB:PA134874048
InParanoid:Q9BZE2 OMA:NHAVKTH PhylomeDB:Q9BZE2 GenomeRNAi:83480
NextBio:72425 ArrayExpress:Q9BZE2 Bgee:Q9BZE2 CleanEx:HS_PUS3
Genevestigator:Q9BZE2 GermOnline:ENSG00000110060 Uniprot:Q9BZE2
Length = 481
Score = 108 (43.1 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 42/136 (30%), Positives = 57/136 (41%)
Query: 106 LNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQHHYAYHSVYKLNTT 165
LN +LPPDIR+ + P F ARFS + Y Y + A +D YA
Sbjct: 164 LNRVLPPDIRILAWAPVEPSFSARFSCLERTYRY-FFPRADLDIVTMDYA---------- 212
Query: 166 LMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEMGA------------LLQL 213
A+ +VG HDF + + +N ++I V +G L Q
Sbjct: 213 -----AQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQF 267
Query: 214 EVEGSGFLYRQVRNMV 229
EV G FLY QVR M+
Sbjct: 268 EVTGQAFLYHQVRCMM 283
Score = 62 (26.9 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 29 LVIGYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLE-REDLRLVGASRTDTGVHAWGQ 86
L I Y G Y G+ Q + TI+ + +AL + +E R+ RTD GV A+GQ
Sbjct: 67 LRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFGQ 126
Query: 87 V 87
V
Sbjct: 127 V 127
>GENEDB_PFALCIPARUM|PFE0815w [details] [associations]
symbol:PFE0815w "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
EMBL:AL844504 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 RefSeq:XP_001351720.1
ProteinModelPortal:Q8I3U5 EnsemblProtists:PFE0815w:mRNA
GeneID:812978 KEGG:pfa:PFE0815w EuPathDB:PlasmoDB:PF3D7_0516300
Uniprot:Q8I3U5
Length = 681
Score = 113 (44.8 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 64 LEREDLRLVGASRTDTGVHAWGQVAHFIT----PFSYDG-LESIHAALNGLLPPDIRVRE 118
+ + +G SRTD GVHA + +I+ P DG +E I +LN LL DI++
Sbjct: 214 INNKPFEFIGVSRTDKGVHAKEYICQYISYEKEP-PCDGDMEHIKRSLNSLLNKDIKILA 272
Query: 119 ISAAVPE-FHARFSAKSKIYHYKIYNDAVMDPFQHHYAY 156
+ + + F+ RF KIY Y + P + +YA+
Sbjct: 273 VLKSPHDHFNIRFHNSGKIYTYNLDIRNPSQPLERNYAW 311
Score = 60 (26.2 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 7 LEGTNNTVKPPTDDSFPGFKWR-------LVIGYDGTRYAGW 41
+E NN+V D+S F R L++ YDGT Y GW
Sbjct: 81 MEQQNNSVNVSKDNSSFIFSNRKKLTNLLLIVNYDGTNYNGW 122
>UNIPROTKB|Q8I3U5 [details] [associations]
symbol:PFE0815w "tRNA pseudouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
EMBL:AL844504 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 RefSeq:XP_001351720.1
ProteinModelPortal:Q8I3U5 EnsemblProtists:PFE0815w:mRNA
GeneID:812978 KEGG:pfa:PFE0815w EuPathDB:PlasmoDB:PF3D7_0516300
Uniprot:Q8I3U5
Length = 681
Score = 113 (44.8 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 64 LEREDLRLVGASRTDTGVHAWGQVAHFIT----PFSYDG-LESIHAALNGLLPPDIRVRE 118
+ + +G SRTD GVHA + +I+ P DG +E I +LN LL DI++
Sbjct: 214 INNKPFEFIGVSRTDKGVHAKEYICQYISYEKEP-PCDGDMEHIKRSLNSLLNKDIKILA 272
Query: 119 ISAAVPE-FHARFSAKSKIYHYKIYNDAVMDPFQHHYAY 156
+ + + F+ RF KIY Y + P + +YA+
Sbjct: 273 VLKSPHDHFNIRFHNSGKIYTYNLDIRNPSQPLERNYAW 311
Score = 60 (26.2 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 7 LEGTNNTVKPPTDDSFPGFKWR-------LVIGYDGTRYAGW 41
+E NN+V D+S F R L++ YDGT Y GW
Sbjct: 81 MEQQNNSVNVSKDNSSFIFSNRKKLTNLLLIVNYDGTNYNGW 122
>UNIPROTKB|G4MKS9 [details] [associations]
symbol:MGG_16154 "tRNA-pseudouridine synthase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
EMBL:CM001231 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003709381.1 ProteinModelPortal:G4MKS9
EnsemblFungi:MGG_16154T0 GeneID:12984466 KEGG:mgr:MGG_16154
Uniprot:G4MKS9
Length = 694
Score = 99 (39.9 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 36/112 (32%), Positives = 51/112 (45%)
Query: 106 LNGLLPPDIRVRE-ISAAVPEFHARFSAKSKIYHY----KIYND--AVMDPFQHHYAYHS 158
LN +LP DIRV P F AR S + Y Y I++ A +D + S
Sbjct: 319 LNAVLPVDIRVLAWCPNPPPGFSARHSCHERQYRYFFTQPIFSPVPARLDGVMGYKEPGS 378
Query: 159 VYK---LNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM 207
+K L+ MREAA F G+HDF F I + + N + I ++E+
Sbjct: 379 THKDGYLDLDAMREAARLFEGEHDFRNFCKIDASKQISNFKRLIREASIVEV 430
Score = 64 (27.6 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 29 LVIGYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKL----ERE----DLRLVGAS--- 75
L + Y G Y G ++Q S P I+ + KAL++ + ER+ D ++ S
Sbjct: 170 LKLAYLGKNYNGLEYQPSGALPAIEEELWKALVKTCLIFPDPERDPSEVDFKVCDYSKCG 229
Query: 76 RTDTGVHAWGQV 87
RTD GV A+GQV
Sbjct: 230 RTDRGVSAFGQV 241
Score = 48 (22.0 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 215 VEGSGFLYRQVRNMV 229
V GS FL+ Q+R+M+
Sbjct: 463 VRGSAFLWHQIRHMI 477
>RGD|1310757 [details] [associations]
symbol:Pus3 "pseudouridylate synthase 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISO] [GO:0031119
"tRNA pseudouridine synthesis" evidence=IEA;ISO] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 RGD:1310757
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:BC158693 EMBL:CH474007
IPI:IPI00194825 RefSeq:NP_001101604.1 UniGene:Rn.22763
STRING:B0BN58 Ensembl:ENSRNOT00000017648 GeneID:315554
KEGG:rno:315554 UCSC:RGD:1310757 NextBio:669414
Genevestigator:B0BN58 Uniprot:B0BN58
Length = 479
Score = 101 (40.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 43/136 (31%), Positives = 55/136 (40%)
Query: 106 LNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQHHYAYHSVYKLNTT 165
LN +LP DIRV + A P F ARFS + Y Y + L+
Sbjct: 163 LNRVLPADIRVLAWAPAEPSFSARFSCLERTYRY----------------FFPCADLDIA 206
Query: 166 LMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI-------EMGA-----LLQL 213
M AA+ +VG HDF + + N ++I V E G L Q
Sbjct: 207 TMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQTVAQSPGEEGRQGPFQLCQF 266
Query: 214 EVEGSGFLYRQVRNMV 229
EV G FLY QVR M+
Sbjct: 267 EVIGQAFLYHQVRCMM 282
Score = 68 (29.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 29 LVIGYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLE-REDLRLVGASRTDTGVHAWGQ 86
L I Y G Y G+ Q + TI+ + +ALI+ +E R+ RTD GV A+GQ
Sbjct: 66 LKIAYLGWGYQGFASQENTSNTIEEKLFEALIKTRLVESRQTSNYHRCGRTDKGVSAFGQ 125
Query: 87 V 87
V
Sbjct: 126 V 126
>POMBASE|SPBC887.11 [details] [associations]
symbol:pus2 "tRNA pseudouridine synthase Pus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0009982 "pseudouridine synthase activity" evidence=ISO]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PomBase:SPBC887.11 GO:GO:0005634
GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K15452
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 PIR:T40736 RefSeq:NP_596485.1
ProteinModelPortal:O94295 EnsemblFungi:SPBC887.11.1 GeneID:2541236
KEGG:spo:SPBC887.11 OrthoDB:EOG4M952K NextBio:20802348
Uniprot:O94295
Length = 451
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 35/128 (27%), Positives = 59/128 (46%)
Query: 29 LVIGYDGTRYAGWQFQTSPPTIQ----CIVEK-ALIRVTKLEREDLRLVGASRTDTGVHA 83
+++GY G Y G Q TI+ +++K ++ ++ E L + A+RTD GVH
Sbjct: 43 ILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNIDAEHLCIARAARTDKGVHT 102
Query: 84 WGQVA--HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 141
+ + D + + LN L IRV + A F+ R S +S+ Y Y I
Sbjct: 103 LRNLISLNLFVDKPLD-ISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYEYLI 161
Query: 142 YNDAVMDP 149
+ A++ P
Sbjct: 162 PSFALLPP 169
Score = 54 (24.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 19/87 (21%), Positives = 40/87 (45%)
Query: 153 HYAYHSVYKLNTT---LMREAAEYFVGKHDFSAFV-----NIQRNDRALNPVKSIFRFDV 204
+Y Y + Y++ ++++ + + G+H+F F N R + V F V
Sbjct: 261 YYCYMN-YRIKEDRLKVLQQLLKKYEGRHNFHNFTVTDDSTSPSNYRFIESVTCGTPF-V 318
Query: 205 IEMGALLQLEVEGSGFLYRQVRNMVNH 231
E + + ++G+ F+ Q+R M+ H
Sbjct: 319 YENWEWIPVTIKGNSFMLNQIRKMMAH 345
>POMBASE|SPCC16C4.06c [details] [associations]
symbol:SPCC16C4.06c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPCC16C4.06c GO:GO:0005634 GO:GO:0005737 EMBL:CU329672
GO:GO:0003723 GO:GO:0006400 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:CFISSES PIR:T41096 RefSeq:NP_587916.1
ProteinModelPortal:O74451 EnsemblFungi:SPCC16C4.06c.1
GeneID:2539359 KEGG:spo:SPCC16C4.06c NextBio:20800524
Uniprot:O74451
Length = 413
Score = 125 (49.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 46/179 (25%), Positives = 78/179 (43%)
Query: 30 VIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLER------EDLRLVGASRTDTGVHA 83
V+ Y GT +AG Q+ + TIQ + +A RV + + + +R+ A+RTD GVHA
Sbjct: 42 VVSYRGTGFAGLQYNANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAARTDKGVHA 101
Query: 84 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 143
V + L + +N +LPP IRV +++ F S++Y Y +
Sbjct: 102 IVNVLG-LKVLDNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSPHTVCDSRVYEYWLPV 160
Query: 144 DAVMDPFQHHYAYHSVYKLNTTLMREAAEY-FVGKHDFSAFVNIQRNDRALNPVKSIFR 201
+++ P L ++ +A+E F S N+ + D N + FR
Sbjct: 161 SSLLTP--------RPCTLEAYVIAKASEKAFPINETLSHLANLSKQDCVANSLSEPFR 211
>UNIPROTKB|J9NVH5 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:AAEX03014587
Ensembl:ENSCAFT00000047970 Uniprot:J9NVH5
Length = 398
Score = 121 (47.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 61/225 (27%), Positives = 95/225 (42%)
Query: 23 PGFKWRLVIGYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 73
P K L++ Y G Y G Q TI+ + AL++ + + ED+R +
Sbjct: 59 PKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQR 118
Query: 74 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 133
+RTD GV A GQV D LE I N LPP IR+ + F+++
Sbjct: 119 CARTDKGVSAAGQVVSLKVWLIDDILEKI----NSHLPPHIRILGLKRVTGGFNSKNKCD 174
Query: 134 SKIYHYKIYNDAVMDPFQH--HYAYHSVYKLNT-TLMREAA--EYFVGKHDFSAFVNIQ- 187
++ Y Y + A F H H Y+L+ TL R + G H+F F + +
Sbjct: 175 ARTYFYMLPTFA----FAHKDHDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFTSQKG 230
Query: 188 -RNDRALNPVKSIFRFD--VIEMGALLQLEVEGSGFLYRQVRNMV 229
+ A + +F + V E ++V+G F+ Q+R MV
Sbjct: 231 PQEASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMV 275
>WB|WBGene00004248 [details] [associations]
symbol:pus-1 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL021572 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
HOGENOM:HOG000031229 OMA:CDARTYF UniGene:Cel.1992 GeneID:180123
KEGG:cel:CELE_W06H3.2 UCSC:W06H3.2a CTD:180123 NextBio:908172
PIR:T26253 RefSeq:NP_507242.1 ProteinModelPortal:Q9XXN0 SMR:Q9XXN0
STRING:Q9XXN0 PRIDE:Q9XXN0 EnsemblMetazoa:W06H3.2a.1
EnsemblMetazoa:W06H3.2a.2 WormBase:W06H3.2a InParanoid:Q9XXN0
ArrayExpress:Q9XXN0 Uniprot:Q9XXN0
Length = 415
Score = 121 (47.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 45/176 (25%), Positives = 75/176 (42%)
Query: 15 KPPTDDSFPGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIR---VTKLERE---D 68
K P K+ +++GY G +Y G Q Q PTI+ + +A+ +T ++E D
Sbjct: 23 KEPKKPRVKQAKYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMETAGWITTAQKEKPFD 82
Query: 69 LRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAA-LNGLLPPDIRVREISAAVPEFH 127
A+RTD V A Q+ P ++ A LN +LP DIRV + FH
Sbjct: 83 FFFQRAARTDRAVSAARQMCGMQLPRDDAKYQAEGAGILNNILPADIRVFGMRRTTNFFH 142
Query: 128 ARFSAKSKIYHYKIYNDAVMDPFQHHYAYHSVYKLNTTLMREA---AEYFVGKHDF 180
+ + Y Y + P + +S ++L+ + E ++G H+F
Sbjct: 143 PQKQCDHRTYSYTCPSFVFAKPTE---LTNSSFRLSPETLAEVNSILSIYLGTHNF 195
>UNIPROTKB|E2QW32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 OMA:CDARTYF EMBL:AAEX03014587
Ensembl:ENSCAFT00000010378 Uniprot:E2QW32
Length = 438
Score = 121 (47.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 61/225 (27%), Positives = 95/225 (42%)
Query: 23 PGFKWRLVIGYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 73
P K L++ Y G Y G Q TI+ + AL++ + + ED+R +
Sbjct: 92 PKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQR 151
Query: 74 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 133
+RTD GV A GQV D LE I N LPP IR+ + F+++
Sbjct: 152 CARTDKGVSAAGQVVSLKVWLIDDILEKI----NSHLPPHIRILGLKRVTGGFNSKNKCD 207
Query: 134 SKIYHYKIYNDAVMDPFQH--HYAYHSVYKLNT-TLMREAA--EYFVGKHDFSAFVNIQ- 187
++ Y Y + A F H H Y+L+ TL R + G H+F F + +
Sbjct: 208 ARTYFYMLPTFA----FAHKDHDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFTSQKG 263
Query: 188 -RNDRALNPVKSIFRFD--VIEMGALLQLEVEGSGFLYRQVRNMV 229
+ A + +F + V E ++V+G F+ Q+R MV
Sbjct: 264 PQEASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMV 308
>ASPGD|ASPL0000040109 [details] [associations]
symbol:AN3170 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:BN001306
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000199032
EnsemblFungi:CADANIAT00009900 OMA:LWDCIFP Uniprot:C8VIE4
Length = 664
Score = 104 (41.7 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 35/110 (31%), Positives = 48/110 (43%)
Query: 106 LNGLLPPDIRVREISAAVPE-FHARFSAKSKIYHYKIYNDAVMDPFQHHYAY-------H 157
LN LP DIRV PE F AR+S + + Y Y + P
Sbjct: 306 LNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKY-FFTQPAFSPTPGPLGLLPRKGDAP 364
Query: 158 SVYK---LNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDV 204
Y+ L+ MREAA+YF G HDF F + + + N + I+R D+
Sbjct: 365 PKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIENFERIIYRADI 414
Score = 48 (22.0 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 74 ASRTDTGVHAWGQV 87
A RTD GV A+GQV
Sbjct: 243 AGRTDRGVSAFGQV 256
Score = 47 (21.6 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 14 VKPPT-----DDSFPGFKW-RLVIGYDGTRYAGWQFQTSPPTIQCIVE----KALIRVTK 63
V+PP D S F++ L Y G RY G + + PT +E KAL+R T+
Sbjct: 148 VRPPKQPKKMDPSQYNFRFIALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMR-TR 206
Query: 64 L 64
L
Sbjct: 207 L 207
>DICTYBASE|DDB_G0281619 [details] [associations]
symbol:DDB_G0281619 "tRNA pseudouridine synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0281619
GO:GO:0003723 EMBL:AAFI02000042 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 ProtClustDB:CLSZ2846682
RefSeq:XP_640538.1 ProteinModelPortal:Q54TQ3
EnsemblProtists:DDB0304450 GeneID:8623148 KEGG:ddi:DDB_G0281619
InParanoid:Q54TQ3 OMA:FINGHIA Uniprot:Q54TQ3
Length = 504
Score = 118 (46.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 38/126 (30%), Positives = 57/126 (45%)
Query: 29 LVIGYDGTRY--AGWQFQTSPPTIQCIVEKALIRVTKL------EREDLRLVGASRTDTG 80
+V GYDGT Y G+Q P+I+ ++EK L R + E + L+ +SRTD G
Sbjct: 93 MVFGYDGTGYYGLGYQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLKWSHSSRTDKG 152
Query: 81 VHAWGQVAH-FIT----PFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSK 135
VH+ V F+ F D ++ +N LP IR+ F AR +
Sbjct: 153 VHSLATVISCFLVVDDNTFKNDINQTFIDTINNYLPSSIRLFSACKVSRSFQARKKGIER 212
Query: 136 IYHYKI 141
Y+Y +
Sbjct: 213 SYNYMV 218
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 187 QRNDRALNPVKSIF-RFDVIEM-G-ALLQLEVEGSGFLYRQVRNMV 229
+ N + +KS + ++IE+ G + + G F+ Q+R MV
Sbjct: 304 RNNSTNIRNIKSFYVENEIIEIKGKGWYKFVIIGESFILYQIRRMV 349
>UNIPROTKB|E1BDL3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 CTD:80324 OMA:CDARTYF
EMBL:DAAA02044957 IPI:IPI00698653 RefSeq:XP_002694500.1
RefSeq:XP_593895.2 UniGene:Bt.7818 Ensembl:ENSBTAT00000017270
GeneID:515808 KEGG:bta:515808 NextBio:20872010 Uniprot:E1BDL3
Length = 433
Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
Identities = 61/225 (27%), Positives = 94/225 (41%)
Query: 23 PGFKWRLVIGYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 73
P K L++ Y G Y G Q TI+ + AL+R + + ED+R +
Sbjct: 88 PKRKIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQR 147
Query: 74 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 133
+RTD GV A GQV D LE I N LP IR+ + F+++
Sbjct: 148 CARTDKGVSAAGQVVSLKVWLIDDILEKI----NSHLPSHIRILGLKRVTGGFNSKNKCD 203
Query: 134 SKIYHYKIYNDAVMDPFQH--HYAYHSVYKLNT-TLMR--EAAEYFVGKHDFSAFVNIQ- 187
++ Y Y + A F H H + Y+L+ TL R + G H+F F + +
Sbjct: 204 ARTYVYMLPTFA----FAHKDHDSQDETYRLSAETLGRVNRLLACYKGTHNFHNFTSQKG 259
Query: 188 -RNDRALNPVKSIFRFD--VIEMGALLQLEVEGSGFLYRQVRNMV 229
A + +F + V E ++V+G F+ Q+R MV
Sbjct: 260 PHEPSARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMV 304
>UNIPROTKB|F1NZ90 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
EMBL:AADN02034827 IPI:IPI00587879 Ensembl:ENSGALT00000003714
Uniprot:F1NZ90
Length = 405
Score = 115 (45.5 bits), Expect = 0.00029, P = 0.00029
Identities = 54/226 (23%), Positives = 97/226 (42%)
Query: 23 PGFKWRLVIGYDGTRYAGWQFQTSPP---TIQCIVEKALIR---VTKLEREDLRLVG--- 73
P K L++ Y G Y G Q TI+ + AL+R + + ED++ +
Sbjct: 58 PKRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMKKMSFQR 117
Query: 74 ASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAK 133
+RTD GV A GQ+ D LE I N LP IR+ + F+++
Sbjct: 118 CARTDKGVSAAGQIVSLKVRLIDDILEKI----NNHLPSHIRILGLKRVTGGFNSKNKCD 173
Query: 134 SKIYHYKI------YNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQ 187
++ Y Y + + D + H + ++ K+N+ L R + G H+F F + +
Sbjct: 174 ARTYAYMLPTFAFAHKDHDVQEEAHRLSRETLEKVNSLLAR-----YKGTHNFHNFTSQK 228
Query: 188 --RNDRALNPVKSIFRFD--VIEMGALLQLEVEGSGFLYRQVRNMV 229
++ A + ++ + V E ++V+G F+ Q+R M+
Sbjct: 229 GPKDPSARRYIMEMYCGEPFVREGIEFAVIKVKGQSFMMHQIRKMI 274
>TAIR|locus:2012898 [details] [associations]
symbol:AT1G20370 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AC026234 eggNOG:COG0101 KO:K06173 OMA:IRKMISM
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 EMBL:AY035176 EMBL:AY059123 IPI:IPI00538439
PIR:E86337 RefSeq:NP_564112.1 UniGene:At.21336
ProteinModelPortal:Q9LN29 STRING:Q9LN29 PaxDb:Q9LN29 PRIDE:Q9LN29
EnsemblPlants:AT1G20370.1 GeneID:838625 KEGG:ath:AT1G20370
TAIR:At1g20370 HOGENOM:HOG000030790 InParanoid:Q9LN29
PhylomeDB:Q9LN29 ProtClustDB:CLSN2917029 ArrayExpress:Q9LN29
Genevestigator:Q9LN29 Uniprot:Q9LN29
Length = 549
Score = 89 (36.4 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 40/133 (30%), Positives = 54/133 (40%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIR---VTKLEREDLR---LVGASRTDT 79
K +V + G Y G Q TI+ +E+AL V +R R ++RTD
Sbjct: 59 KVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSARTDK 118
Query: 80 GVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHY 139
GV A GQV ++ Y LN LP IRV P F ++ + Y Y
Sbjct: 119 GVSAVGQV---VSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKFCDRRRYVY 175
Query: 140 KIYNDAVMDPFQH 152
I A +DP H
Sbjct: 176 LIPVFA-LDPCVH 187
Score = 65 (27.9 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 173 YFVGKHDFSAFVN-IQRNDRALNPVKSIFRFD-VIEMGA--LLQLEVEGSGFLYRQVRNM 228
Y+VG H+F F + D A N F + VI + ++ EV G F+ Q+R M
Sbjct: 327 YYVGSHNFHNFTTRTKAADPAANRYILSFNANTVINLDGKDFVKCEVVGQSFMLHQIRKM 386
Query: 229 V 229
+
Sbjct: 387 I 387
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.138 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 237 237 0.00090 113 3 11 22 0.38 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 54
No. of states in DFA: 597 (63 KB)
Total size of DFA: 191 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.69u 0.11s 18.80t Elapsed: 00:00:01
Total cpu time: 18.70u 0.11s 18.81t Elapsed: 00:00:01
Start: Fri May 10 20:28:10 2013 End: Fri May 10 20:28:11 2013