BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042710
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6MEE7|TRUA1_PARUW tRNA pseudouridine synthase A 1 OS=Protochlamydia amoebophila
(strain UWE25) GN=truA1 PE=3 SV=1
Length = 256
Score = 183 bits (465), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 134/204 (65%), Gaps = 4/204 (1%)
Query: 27 WRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 86
++L I YDGT Y+GWQ Q + +IQ +++AL + L++E + LVG+ RTD GVHA GQ
Sbjct: 4 YKLTIAYDGTNYSGWQIQPNASSIQQKIQEALCIL--LKKEKVVLVGSGRTDAGVHAKGQ 61
Query: 87 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 146
VAHF Y L +H +LNGLLP DIR++ + P FH+++SA K YHY ++ + V
Sbjct: 62 VAHFHFQ-DYIDLSRLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNKV 120
Query: 147 MDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVN-IQRNDRALNPVKSIFRFDVI 205
MDPFQ Y++H K++ ++++AA F G HDF++F N R A NPV++++R D+
Sbjct: 121 MDPFQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDIK 180
Query: 206 EMGALLQLEVEGSGFLYRQVRNMV 229
L+LE EG GFLY+ VRN+V
Sbjct: 181 PNEGGLRLEFEGDGFLYKMVRNIV 204
>sp|Q8R7Y7|TRUA_THETN tRNA pseudouridine synthase A OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=truA PE=3 SV=1
Length = 240
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 123/201 (61%), Gaps = 6/201 (2%)
Query: 29 LVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 88
L+I YDGT Y GWQ+Q + T+Q ++EKA+ +VT E + L+G+SRTDTGVHA QVA
Sbjct: 2 LIIEYDGTNYHGWQYQKNAITVQEVLEKAIEKVTG---EKVNLIGSSRTDTGVHALYQVA 58
Query: 89 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 148
+F T E + ALN +LP D+ V + FHAR+SA+SK Y Y I N
Sbjct: 59 NFKTKTKIPP-EKLPYALNAVLPDDVVVVKAKEVDKSFHARYSARSKRYRYLILNRQFPM 117
Query: 149 PFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEMG 208
P +Y +H Y L+ M++AA +F G HDFSAF ++ +NPVK+IF V + G
Sbjct: 118 PTMRNYCWHVPYPLDVEAMKKAAFFFRGTHDFSAFK--ASGNKKVNPVKTIFDLTVEKEG 175
Query: 209 ALLQLEVEGSGFLYRQVRNMV 229
L+++EVE GFLY VR +V
Sbjct: 176 DLIKIEVEADGFLYNMVRIIV 196
>sp|A8F526|TRUA_THELT tRNA pseudouridine synthase A OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=truA PE=3 SV=1
Length = 245
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 121/201 (60%), Gaps = 7/201 (3%)
Query: 30 VIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAH 89
++ YDGT + G+Q Q T+Q + E+AL R+ K + + + A RTDTGVHA GQ+
Sbjct: 7 IVSYDGTNFCGFQVQKDVRTVQGMFEQALERILK---QRVITIAAGRTDTGVHANGQIVC 63
Query: 90 FITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDP 149
F D ES+ A+N LP DI VR++ FH RF AK +IYHY IYN +
Sbjct: 64 FDCYLDIDE-ESMKNAMNANLPDDIYVRKVVEVDKNFHPRFDAKRRIYHYLIYNSQEPNL 122
Query: 150 FQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM-G 208
F +YA+ YKLN MREAA++F G+HDF +F ++ D N V++I+R V+++ G
Sbjct: 123 FIRNYAWWFPYKLNICKMREAAKFFEGEHDFRSF--MKSGDHRENTVRTIYRVRVLQLRG 180
Query: 209 ALLQLEVEGSGFLYRQVRNMV 229
++ + VEG FL R VRNMV
Sbjct: 181 GIILIRVEGRSFLRRMVRNMV 201
>sp|P70973|TRUA_BACSU tRNA pseudouridine synthase A OS=Bacillus subtilis (strain 168)
GN=truA PE=3 SV=2
Length = 247
Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 117/202 (57%), Gaps = 4/202 (1%)
Query: 25 FKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 84
+ + I YDG + G+Q Q T+Q +EKAL + K ++ + +V + RTD+GVHA
Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK-SKDRIPVVSSGRTDSGVHAA 59
Query: 85 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 144
GQV HF TP S E ALN LLP DI V++ A FHARFSA K Y Y +Y +
Sbjct: 60 GQVIHFDTPLSIPA-ERWPYALNALLPDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118
Query: 145 AVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDV 204
D F+ HYAYH Y+LN MREAA++ +G HDF++F + + V++I+ D
Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTE--VQDKVRTIYELDW 176
Query: 205 IEMGALLQLEVEGSGFLYRQVR 226
E LQ+ + GSGFLY VR
Sbjct: 177 TETADGLQMRITGSGFLYNMVR 198
>sp|B8I814|TRUA_CLOCE tRNA pseudouridine synthase A OS=Clostridium cellulolyticum (strain
ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=truA PE=3
SV=1
Length = 245
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 118/202 (58%), Gaps = 7/202 (3%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
K RL I YDGT Y GWQ Q + T+Q +++KAL +KL ED+ + G SRTD GVHA+G
Sbjct: 3 KIRLTIEYDGTNYHGWQIQKNAKTVQEVIQKAL---SKLLGEDVGVTGCSRTDVGVHAYG 59
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QVAHF+T G + A+N LLP DI ++ EFHAR+SAK K Y Y IYN
Sbjct: 60 QVAHFLTDSKIPG-DKFSYAINNLLPDDIVIKNSEEVPEEFHARYSAKGKKYRYLIYNSP 118
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDV- 204
+ + H +LN M++AA YF G+HDF AF R+ V+ I+ +V
Sbjct: 119 HASAIMRNRSCHVRPELNVAEMQKAAGYFKGEHDFLAFQATGGQVRS--TVREIYGMEVY 176
Query: 205 IEMGALLQLEVEGSGFLYRQVR 226
++ ++ +EV G+GFLY VR
Sbjct: 177 VKEDNMISIEVSGNGFLYNMVR 198
>sp|Q9PJT0|TRUA_CHLMU tRNA pseudouridine synthase A OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=truA PE=3 SV=1
Length = 267
Score = 150 bits (380), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 15/207 (7%)
Query: 29 LVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 88
L I Y GT Y+GWQ+Q + +IQ ++E L K+ R + ++ + RTD GVHA GQVA
Sbjct: 7 LRIAYQGTAYSGWQYQPNALSIQEVLETLL---QKISRTRISVIASGRTDAGVHAQGQVA 63
Query: 89 HFITP----FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 144
HF P FS G I LN LLP DI +R++ A +FH+RFSA +K YHY +
Sbjct: 64 HFCCPDHPHFSDPG--QIKKMLNALLPHDIVIRDVIATNEDFHSRFSAITKEYHYTL--S 119
Query: 145 AVMDPFQHH--YAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRF 202
+ P HH + + +KL MREAA+Y VG HDF++F N+ R + V++++
Sbjct: 120 LLPKPLPHHRLFCFSPRHKLCLESMREAAKYLVGTHDFASFANLGREYSST--VRTLYAL 177
Query: 203 DVIEMGALLQLEVEGSGFLYRQVRNMV 229
D++E L+ + +G+GFLY+ VRN+V
Sbjct: 178 DLLEQEHLVTVICKGNGFLYKMVRNIV 204
>sp|Q8XLQ0|TRUA1_CLOPE tRNA pseudouridine synthase A 1 OS=Clostridium perfringens (strain
13 / Type A) GN=truA1 PE=3 SV=1
Length = 248
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 121/206 (58%), Gaps = 10/206 (4%)
Query: 28 RLVIGYDGTRYAGWQFQ----TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHA 83
++ + YDG++Y GWQ Q ++ T+Q +EK L TK+ E+++L+G RTD+GVHA
Sbjct: 5 KITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVL---TKMTSEEIQLIGCGRTDSGVHA 61
Query: 84 WGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 143
VA+F T S LE I +N LP DIRV EI A FHARF+ KSK Y Y I N
Sbjct: 62 KNYVANFKTN-SLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDN 120
Query: 144 DAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFD 203
+ D F YA+H KL+ M E A+Y +G HDF +F +++ +++ +++I +
Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKS--TLRTINSIE 178
Query: 204 VIEMGALLQLEVEGSGFLYRQVRNMV 229
E +L +++ G+GFL VR MV
Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIMV 204
>sp|B3E0A0|TRUA_METI4 tRNA pseudouridine synthase A OS=Methylacidiphilum infernorum
(isolate V4) GN=truA PE=3 SV=1
Length = 255
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 118/203 (58%), Gaps = 5/203 (2%)
Query: 27 WRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 86
++L + Y G+ + GWQ Q PT+Q +E+A V K+ E + + GA RTD GVHA GQ
Sbjct: 8 YKLTLSYCGSGFHGWQRQGELPTVQRALEEA---VAKIWEEPIPVEGAGRTDAGVHAKGQ 64
Query: 87 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 146
VA F P + E + ALN LP +RV + EF ARF A SK Y Y ++ND V
Sbjct: 65 VASFAAPRKLEP-EVLKRALNYHLPDTVRVWDARIVPREFSARFDAVSKTYQYLLWNDPV 123
Query: 147 MDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIE 206
MDPF A+H ++ +M EAA F+GKH+F+AFV+ NPV+++ +E
Sbjct: 124 MDPFYLGRAWHIPRAMDVEMMNEAARLFLGKHNFAAFVS-NPGMPVKNPVRTVLDCFFLE 182
Query: 207 MGALLQLEVEGSGFLYRQVRNMV 229
G+L+ V+ GFLYR VRNMV
Sbjct: 183 QGSLVFFNVKADGFLYRMVRNMV 205
>sp|A3DJK8|TRUA_CLOTH tRNA pseudouridine synthase A OS=Clostridium thermocellum (strain
ATCC 27405 / DSM 1237) GN=truA PE=3 SV=1
Length = 244
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 114/202 (56%), Gaps = 6/202 (2%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+L+I YDGT Y GWQ Q + T+Q +E+A + L E + L+GASRTD GVHA GQV
Sbjct: 5 KLIIEYDGTNYHGWQKQKNAKTVQDTIERA---IKGLTGEKVDLIGASRTDFGVHALGQV 61
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
A+FIT G + ALN +LP DI ++E +FHAR+ AK K Y Y IYN
Sbjct: 62 ANFITNSGIPG-DRFSYALNRMLPDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQFP 120
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM 207
H YH +KL+ M+ AA YF+G HDFSAF + A V++I +
Sbjct: 121 SALLRHRTYHVSHKLDFESMQRAASYFLGTHDFSAFRS--SGSSAKTSVRTITDVSLERE 178
Query: 208 GALLQLEVEGSGFLYRQVRNMV 229
+++ E+ G GFLY VR +V
Sbjct: 179 DKIVKFEIAGDGFLYNMVRIIV 200
>sp|B0K5S6|TRUA_THEPX tRNA pseudouridine synthase A OS=Thermoanaerobacter sp. (strain
X514) GN=truA PE=3 SV=1
Length = 244
Score = 147 bits (372), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 117/201 (58%), Gaps = 6/201 (2%)
Query: 29 LVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 88
+V+ YDGT Y GWQ+Q + T+Q +++KA+ +VT E++ L+GASRTDTGVHA QVA
Sbjct: 6 IVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVA 62
Query: 89 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 148
+F T E + ALN +LP DI V + FHAR+SAK K Y Y I N
Sbjct: 63 NFKTNTKIPA-EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQM 121
Query: 149 PFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEMG 208
P +Y +H Y LN M++AA Y +G HDFSAF + +++++ + +
Sbjct: 122 PTMRNYCWHISYPLNIEEMKKAASYLIGTHDFSAFK--ASGSSKTSTIRTVYDLTIEKNE 179
Query: 209 ALLQLEVEGSGFLYRQVRNMV 229
+ +E+E +GFLY VR +V
Sbjct: 180 DFINIEIEANGFLYNMVRIIV 200
>sp|B0KCN3|TRUA_THEP3 tRNA pseudouridine synthase A OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=truA PE=3
SV=1
Length = 244
Score = 147 bits (372), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 117/201 (58%), Gaps = 6/201 (2%)
Query: 29 LVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 88
+V+ YDGT Y GWQ+Q + T+Q +++KA+ +VT E++ L+GASRTDTGVHA QVA
Sbjct: 6 IVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTG---EEVNLIGASRTDTGVHALYQVA 62
Query: 89 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 148
+F T E + ALN +LP DI V + FHAR+SAK K Y Y I N
Sbjct: 63 NFKTNTKIPA-EKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQM 121
Query: 149 PFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEMG 208
P +Y +H Y LN M++AA Y +G HDFSAF + +++++ + +
Sbjct: 122 PTMRNYCWHISYPLNIEEMKKAASYLIGTHDFSAFK--ASGSSKTSTIRTVYDLTIEKNE 179
Query: 209 ALLQLEVEGSGFLYRQVRNMV 229
+ +E+E +GFLY VR +V
Sbjct: 180 DFINIEIEANGFLYNMVRIIV 200
>sp|C4KZL4|TRUA_EXISA tRNA pseudouridine synthase A OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=truA PE=3 SV=1
Length = 246
Score = 147 bits (370), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 115/206 (55%), Gaps = 12/206 (5%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
+ +L++ YDGT YAG+Q Q + TIQ +E L R + R ++++ + RTD VHA G
Sbjct: 3 RIKLIVAYDGTHYAGYQVQPNGNTIQAEIESVLAR---MHRHPVKIIASGRTDARVHALG 59
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QV HF T E ALN +LP DI V++ FHAR+ AK K Y Y I
Sbjct: 60 QVIHFDTTLEMPA-ERFVKALNAMLPDDILVKQAEEMDDTFHARYGAKRKEYRYHIRQTE 118
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAF--VNIQRNDRALNPVKSIFRFD 203
DPF+ HYA YKL+ MR+A E +G HDF++F + DR V++I+ +
Sbjct: 119 --DPFRRHYAATVTYKLSLEAMRQAMERLIGTHDFTSFSVTKAEVEDR----VRTIYEAE 172
Query: 204 VIEMGALLQLEVEGSGFLYRQVRNMV 229
V+EMG + GSGFLY QVR MV
Sbjct: 173 VLEMGDEIIFRFVGSGFLYNQVRIMV 198
>sp|Q253C0|TRUA_CHLFF tRNA pseudouridine synthase A OS=Chlamydophila felis (strain
Fe/C-56) GN=truA PE=3 SV=1
Length = 268
Score = 147 bits (370), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 125/203 (61%), Gaps = 7/203 (3%)
Query: 29 LVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 88
L++ Y GT YAGWQ Q + +IQ ++E AL RV + + + + RTD+GVHA+GQVA
Sbjct: 6 LLLAYQGTAYAGWQRQPNDLSIQEVIESALARVLG---KPIVVSSSGRTDSGVHAYGQVA 62
Query: 89 HFITPFS--YDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 146
HF P + +SI LN +LP DI +R++ + FHARFSA +K Y Y +
Sbjct: 63 HFSQPDHPLFSQPQSIKKMLNAILPKDIVIRDVVLSDVNFHARFSAIAKEYRYSLTRSPK 122
Query: 147 MDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIE 206
P+Q ++AY+ + + LM++ A+Y +G HDF++F N R+ + +++F+ D+I+
Sbjct: 123 PLPWQRYFAYYPRHSIKIDLMQKGAKYLLGTHDFASFANHGRDYTSTE--RTLFKLDIID 180
Query: 207 MGALLQLEVEGSGFLYRQVRNMV 229
++ + +G+GFLY+ VRN+V
Sbjct: 181 NEEIVTIICKGNGFLYKMVRNIV 203
>sp|B2GDT8|TRUA_LACF3 tRNA pseudouridine synthase A OS=Lactobacillus fermentum (strain
NBRC 3956 / LMG 18251) GN=truA PE=3 SV=1
Length = 258
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 5/206 (2%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
++++ YDG+ +AG+Q Q T+Q ++E+A+ ++ K + L + G+ RTD GVHA G
Sbjct: 3 RYKITFAYDGSNFAGFQIQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHALG 62
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QVAHF P+ G S+ ALN LP D+ V+E + P+FHARF A K Y Y++
Sbjct: 63 QVAHFDLPYQIPG-PSLVRALNSSLPLDVLVKEATEVAPDFHARFDAHHKRYRYRVVGGE 121
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
+PF+ +Y H Y ++ M+ AA+ FVG+HDF++FV +A + V+ I V+
Sbjct: 122 FTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFV--ASGSQATSNVRRIDEVTVV 179
Query: 206 --EMGALLQLEVEGSGFLYRQVRNMV 229
E + + G+GFLY QVR MV
Sbjct: 180 RDEENDEVVFDFVGNGFLYNQVRIMV 205
>sp|Q9Z7X4|TRUA_CHLPN tRNA pseudouridine synthase A OS=Chlamydia pneumoniae GN=truA PE=3
SV=2
Length = 267
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 121/208 (58%), Gaps = 11/208 (5%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
K L+I Y GT Y+GWQ Q + +IQ ++E +L ++TK L+ + RTD GVHA+G
Sbjct: 3 KVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTP---LIASGRTDAGVHAYG 59
Query: 86 QVAHFITP----FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKI 141
QVAHF P F+ L ALN +LP DI +R+++ FHAR+ +K Y Y +
Sbjct: 60 QVAHFRAPDHPLFANANLTK--KALNAILPKDIVIRDVALFDDNFHARYLTIAKEYRYSL 117
Query: 142 YNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFR 201
A P+Q H+ Y + +T LM+E A +G HDF++F N R+ + V++I+
Sbjct: 118 SRLAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFANHGRDYNST--VRTIYT 175
Query: 202 FDVIEMGALLQLEVEGSGFLYRQVRNMV 229
D+++ G L + G+GFLY+ VRN+V
Sbjct: 176 LDIVDKGDSLSIICRGNGFLYKMVRNLV 203
>sp|Q63GF1|TRUA2_BACCZ tRNA pseudouridine synthase A 2 OS=Bacillus cereus (strain ZK /
E33L) GN=truA2 PE=3 SV=1
Length = 245
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 119/204 (58%), Gaps = 7/204 (3%)
Query: 27 WRLVIGYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMIGKEIEIIGCSRTDAGVHALN 60
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
+PF Y+ H KLN M+EAA++ VG HDF+AF N + +++ V+ ++ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 206 EMGALLQLEVEGSGFLYRQVRNMV 229
E +Q+ V G+GFL+ VR +V
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIV 201
>sp|Q6I3T8|TRUA2_BACAN tRNA pseudouridine synthase A 2 OS=Bacillus anthracis GN=truA2 PE=3
SV=1
Length = 245
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 116/204 (56%), Gaps = 7/204 (3%)
Query: 27 WRLVIGYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
+PF Y+ H KLN M+EAA++ VG HDF+AF N + +++ V+ ++ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 206 EMGALLQLEVEGSGFLYRQVRNMV 229
E +Q+ V G+GFL+ VR +V
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIV 201
>sp|Q73E17|TRUA2_BACC1 tRNA pseudouridine synthase A 2 OS=Bacillus cereus (strain ATCC
10987) GN=truA2 PE=3 SV=1
Length = 245
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 116/204 (56%), Gaps = 7/204 (3%)
Query: 27 WRLVIGYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
+PF Y+ H KLN M+EAA++ VG HDF+AF N + +++ V+ ++ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLEVM 177
Query: 206 EMGALLQLEVEGSGFLYRQVRNMV 229
E +Q+ V G+GFL+ VR +V
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIV 201
>sp|Q5L3Q7|TRUA_GEOKA tRNA pseudouridine synthase A OS=Geobacillus kaustophilus (strain
HTA426) GN=truA PE=3 SV=1
Length = 258
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 117/203 (57%), Gaps = 5/203 (2%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+ +I YDGT ++G+Q Q T+Q E+ L R+ K + +R+ + RTD GVHA+GQV
Sbjct: 6 KCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTK--VRVAASGRTDAGVHAYGQV 63
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
HF TP S E ALN LP DI VR + A +FHARFSAK+K Y YK++ A
Sbjct: 64 IHFDTPLSLSS-EQWKKALNAQLPDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAAER 122
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM 207
D F+ HY Y L+ + M EA G HDF++F + + + + V++++R +V
Sbjct: 123 DVFRRHYCAWHPYSLHISAMNEALRLLHGTHDFTSFCSAKTSIE--DRVRTMYRAEVKAD 180
Query: 208 GALLQLEVEGSGFLYRQVRNMVN 230
G +L+ GSGFLY VR +V
Sbjct: 181 GPMLEFRFVGSGFLYNMVRIIVG 203
>sp|Q8CXP1|TRUA_OCEIH tRNA pseudouridine synthase A OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=truA PE=3
SV=1
Length = 253
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 120/205 (58%), Gaps = 4/205 (1%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
+ + + YDG+ +AG+Q Q T+Q ++EKAL + K + +R+ + RTDTGVHA G
Sbjct: 3 RLKCTVSYDGSDFAGFQVQPDHRTVQGVLEKALYNMHK--GKSIRIQASGRTDTGVHAVG 60
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QV HF +P + ALN LLP D+R++++ EFHAR+S K K YHY + N+
Sbjct: 61 QVIHFDSPLEIPE-RNWKQALNTLLPDDVRIQKVEKKTEEFHARYSVKEKEYHYFVLNEE 119
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
+ FQ Y YH KL+ M+EA +Y G HDF++F + + + + + V++++
Sbjct: 120 DPNVFQRGYVYHEPRKLDLERMQEACQYLEGTHDFTSFSSAKSSVKG-SKVRTLYHVSCH 178
Query: 206 EMGALLQLEVEGSGFLYRQVRNMVN 230
+ G ++ GSGFLY VR M++
Sbjct: 179 QTGTNIEFIFRGSGFLYNMVRIMMS 203
>sp|Q813Z9|TRUA2_BACCR tRNA pseudouridine synthase A 2 OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=truA2 PE=3 SV=1
Length = 245
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 118/204 (57%), Gaps = 7/204 (3%)
Query: 27 WRLVIGYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
++L I YDG R+ GWQ + TIQ +E ++++ +++ ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESV---ISEMVGKEIEIIGCSRTDAGVHALN 60
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QVA+F + + LN LP DI + + FHAR+++K+K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEE 119
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
+PF Y+ H KLN M+ AA++ VG HDF+AF N + +++ V+ ++ DV+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSM--VREVYTLDVM 177
Query: 206 EMGALLQLEVEGSGFLYRQVRNMV 229
E +Q+ V G+GFL+ VR +V
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIV 201
>sp|A8F9B7|TRUA_BACP2 tRNA pseudouridine synthase A OS=Bacillus pumilus (strain SAFR-032)
GN=truA PE=3 SV=1
Length = 247
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 113/202 (55%), Gaps = 4/202 (1%)
Query: 25 FKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 84
K + + YDGT + G+Q Q T+Q +E AL ++ K + E + +V + RTD+GVHA
Sbjct: 1 MKVKCTVSYDGTHFKGYQVQPGQRTVQTEIESALAKMHK-QDELVPIVASGRTDSGVHAK 59
Query: 85 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 144
GQV HF TP S +E ALN LLP DIRV + FHARFS SK Y YK+ +
Sbjct: 60 GQVIHFDTPLSIP-MERWPFALNSLLPDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTE 118
Query: 145 AVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDV 204
+ F YA H Y+L+ MREAA Y +G HDF++F N + V+ I+ +
Sbjct: 119 THQNVFTRQYACHFPYRLDADKMREAAGYLIGTHDFTSFCAA--NTEVQDKVREIYTLEW 176
Query: 205 IEMGALLQLEVEGSGFLYRQVR 226
+ L++ V G+GFLY VR
Sbjct: 177 KNVSDGLEMRVRGNGFLYNMVR 198
>sp|Q5L6V3|TRUA_CHLAB tRNA pseudouridine synthase A OS=Chlamydophila abortus (strain
S26/3) GN=truA PE=3 SV=1
Length = 268
Score = 144 bits (362), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 122/203 (60%), Gaps = 7/203 (3%)
Query: 29 LVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 88
+++ Y GT YAGWQ Q + +IQ ++E +L +V + + + + RTD VHA+GQVA
Sbjct: 6 ILLAYQGTAYAGWQRQPNDLSIQEVIENSLAQVVG---KRIPVTSSGRTDAEVHAFGQVA 62
Query: 89 HFITPF--SYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 146
HF P + SI LN LLP DI +R++ +FH+RFSA +K Y Y +
Sbjct: 63 HFSQPDHPQFSQASSIKKMLNALLPKDIVIRDVVLGDDKFHSRFSAIAKEYRYVLTRSPK 122
Query: 147 MDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIE 206
P++ ++AY+ + L T LM+E A+Y +G HDF++F N R+ + ++++F D+++
Sbjct: 123 PLPWERYFAYYPRHHLKTDLMQEGAQYLLGTHDFASFANHGRD--YTSTIRTLFNLDIVD 180
Query: 207 MGALLQLEVEGSGFLYRQVRNMV 229
G + + G+GFLY+ VRN+V
Sbjct: 181 HGETVTIICRGNGFLYKMVRNIV 203
>sp|Q6HNW5|TRUA2_BACHK tRNA pseudouridine synthase A 2 OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=truA2 PE=3 SV=1
Length = 245
Score = 144 bits (362), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 115/204 (56%), Gaps = 7/204 (3%)
Query: 27 WRLVIGYDGTRYAGWQ-FQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
++L I YDG R+ GWQ + TIQ +E + + E E ++G SRTD GVHA
Sbjct: 4 YKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETE---IIGCSRTDAGVHALN 60
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QVA+F + + LN LP DI + + FHAR+++K K Y YKI+N+
Sbjct: 61 QVANFQSDEKLVE-HKVKKYLNQYLPNDISITNVEEVHNRFHARYNSKVKTYLYKIWNEE 119
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
+PF Y+ H KLN M+EAA++ VG HDF+AF N + +++ V+ ++ +V+
Sbjct: 120 HTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSM--VREVYSLEVM 177
Query: 206 EMGALLQLEVEGSGFLYRQVRNMV 229
E +Q+ V G+GFL+ VR +V
Sbjct: 178 EEAGFVQIRVSGNGFLHNMVRKIV 201
>sp|A7Z0S0|TRUA_BACA2 tRNA pseudouridine synthase A OS=Bacillus amyloliquefaciens (strain
FZB42) GN=truA PE=3 SV=1
Length = 247
Score = 143 bits (361), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 113/200 (56%), Gaps = 6/200 (3%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+ I YDG + G+Q Q T+Q +EKAL + K + + + + RTD+ VHA GQV
Sbjct: 4 KCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGR-VPVYSSGRTDSDVHAAGQV 62
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
HF TP S G E ALN LLP DI V+ A FHARFSA K Y Y +Y +
Sbjct: 63 IHFDTPLSIPG-EKWPFALNALLPDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTEKHP 121
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRAL-NPVKSIFRFDVIE 206
D F+ HYAYH Y LN MREA+ + VG HDF++F D A+ + V++I+ D E
Sbjct: 122 DVFKRHYAYHFAYPLNVQKMREASRHLVGTHDFTSFCAA---DTAVQDKVRTIYELDWTE 178
Query: 207 MGALLQLEVEGSGFLYRQVR 226
LQ+ + G+GFLY VR
Sbjct: 179 TVDGLQMRITGNGFLYNMVR 198
>sp|Q65P74|TRUA_BACLD tRNA pseudouridine synthase A OS=Bacillus licheniformis (strain DSM
13 / ATCC 14580) GN=truA PE=3 SV=1
Length = 247
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 117/202 (57%), Gaps = 4/202 (1%)
Query: 25 FKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 84
+ + I YDG + G+Q Q TIQ +EKAL + K +E + +V + RTD+GVHA
Sbjct: 1 MRMKCTISYDGHLFYGYQVQPGQRTIQDELEKALQTLHK-AKERIPVVSSGRTDSGVHAV 59
Query: 85 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 144
GQ HF +P S + +A LN LLP DI VR+ A +FHARFSAK K Y Y IY
Sbjct: 60 GQTIHFDSPLSIPEAKWPYA-LNALLPDDISVRKAEAVNDQFHARFSAKRKEYRYMIYRG 118
Query: 145 AVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDV 204
D F+ +YAYH Y L+ ++EA+ Y VG HDF++F + + + V+++ +
Sbjct: 119 RHPDVFKRYYAYHVPYDLDMEKVKEASRYLVGTHDFTSFCATKTEVK--DKVRTVHELEW 176
Query: 205 IEMGALLQLEVEGSGFLYRQVR 226
+ G LQ+ + GSGFLY VR
Sbjct: 177 SDTGDGLQMRIVGSGFLYNMVR 198
>sp|Q893H3|TRUA1_CLOTE tRNA pseudouridine synthase A 1 OS=Clostridium tetani (strain
Massachusetts / E88) GN=truA1 PE=3 SV=1
Length = 245
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 116/200 (58%), Gaps = 7/200 (3%)
Query: 28 RLVIGYDGTRYAGWQFQTSPP-TIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQ 86
++++ YDGTRY GWQ Q TIQ +E L +K+ ED++++G RTD GVHA
Sbjct: 5 KMILEYDGTRYKGWQKQKKDVLTIQDKIETVL---SKMTGEDIQVIGCGRTDAGVHAENY 61
Query: 87 VAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAV 146
VA+F T + ++ + L LP DI V+ + FHAR++ KSK Y Y+I N+
Sbjct: 62 VANFHTNCDF-TVDYMLDYLYEFLPEDIVVKTMKDTSERFHARYNVKSKTYVYRINNNKF 120
Query: 147 MDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIE 206
F YAYH KLN + M++AAE+ +G HDF +F ++ N ++ +++I ++ E
Sbjct: 121 RSVFNKKYAYHDNEKLNISAMKDAAEFLIGTHDFKSFTRLKSNSKS--TIRAIKYINITE 178
Query: 207 MGALLQLEVEGSGFLYRQVR 226
++ +EV G+GFL VR
Sbjct: 179 NQGIISIEVNGNGFLLNMVR 198
>sp|B1I1B5|TRUA_DESAP tRNA pseudouridine synthase A OS=Desulforudis audaxviator (strain
MP104C) GN=truA PE=3 SV=1
Length = 250
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 114/205 (55%), Gaps = 7/205 (3%)
Query: 28 RLVIGYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
RL + YDGT Y G+Q Q+ PTIQ +E+ L +L L++ GASRTD GVHA G
Sbjct: 5 RLTLAYDGTAYHGFQKQSGSGLPTIQETLERCL---AELSGAALKVTGASRTDAGVHARG 61
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QV +F+T E I AALNG+LP DI + +FHAR+SA +K Y Y +YN
Sbjct: 62 QVVNFVTGRWGIPTERIPAALNGVLPGDIAALDAREVPADFHARYSAVAKTYSYTLYNHP 121
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
V PFQ Y+ H L+ MR AA + +G+HDFS F R + + V+++ R D+
Sbjct: 122 VRSPFQRLYSLHVPRALDLRAMRLAARHLMGRHDFSTFQAAGRPVQ--SAVRTLTRADIE 179
Query: 206 EMGALLQLEVEGSGFLYRQVRNMVN 230
L++L GFLY VR M
Sbjct: 180 AQAPLVRLVFRADGFLYNMVRIMAG 204
>sp|A4J151|TRUA_DESRM tRNA pseudouridine synthase A OS=Desulfotomaculum reducens (strain
MI-1) GN=truA PE=3 SV=1
Length = 247
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 117/201 (58%), Gaps = 7/201 (3%)
Query: 28 RLVIGYDGTRYAGWQFQ--TSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
+L + YDGT Y G+Q Q T TIQ +EKAL + + + ++++GA RTD GVHA G
Sbjct: 5 KLTLAYDGTNYHGFQEQRGTGLATIQEALEKAL---STIAQTPIQVIGAGRTDAGVHAQG 61
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QV +F + E ALN LLP DI+V + +FHARFSA +K Y Y IY+
Sbjct: 62 QVVNFRSEKWPVPAEKAPLALNVLLPGDIKVVKAEEVPMDFHARFSAVAKTYRYSIYHHR 121
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
VM PF +Y YH +L+ M+E A Y +G +DF +F + + +++I+R D+I
Sbjct: 122 VMSPFHRYYCYHEPRRLDVNAMQEGAAYLLGTYDFKSFQ--AQGTPVKDTIRTIYRADII 179
Query: 206 EMGALLQLEVEGSGFLYRQVR 226
E ++ L + G+GFLY VR
Sbjct: 180 EDAPVINLYLRGNGFLYNMVR 200
>sp|P60350|TRUA_GEOSL tRNA pseudouridine synthase A OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=truA PE=3 SV=1
Length = 244
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 112/206 (54%), Gaps = 12/206 (5%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+L++ YDGT YAGWQ Q + +IQ +VE AL R+ K E +RL + RTD GVHA G V
Sbjct: 5 KLILEYDGTNYAGWQLQPNGLSIQEVVEGALARLLK---EPVRLRASGRTDAGVHARGMV 61
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
A F T S L + LN LLPPDI VR A+P F+ RF+A K Y Y I+
Sbjct: 62 AAFDTDRSIP-LRAFSDGLNALLPPDIAVRSADEALPGFNPRFAATGKHYRYTIHRGERR 120
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM 207
P ++H LN MREAA + G+ DF++F R +I R D +E+
Sbjct: 121 SPLVRLQSWHVRGALNLAAMREAARHLTGERDFASFRTAGCAART-----TIRRVDAVEI 175
Query: 208 ---GALLQLEVEGSGFLYRQVRNMVN 230
G +L ++V GSGFL VR MV
Sbjct: 176 SDDGEMLTVDVHGSGFLRNMVRIMVG 201
>sp|Q890R5|TRUA2_CLOTE tRNA pseudouridine synthase A 2 OS=Clostridium tetani (strain
Massachusetts / E88) GN=truA2 PE=3 SV=1
Length = 248
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 8/201 (3%)
Query: 28 RLVIGYDGTRYAGWQFQTSP--PTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
RL + YDGT Y+GWQ Q TIQ +EKA+ TK E++ L+G+SRTD GVHA
Sbjct: 6 RLKVEYDGTNYSGWQKQKDKNIKTIQSSIEKAIEEATK---EEVELIGSSRTDAGVHALA 62
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
A+F T + G E ALN LP DI + E EFH+RF K Y YKI N
Sbjct: 63 YTANFKTCSTIPG-EKFKHALNRFLPEDIVILESEEVPMEFHSRFDCIGKTYVYKILNRP 121
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
+ P Q +Y YH +L+ M EA+++ +G HDF+AF N + V++I +++
Sbjct: 122 LFSPIQRNYIYHVKDELDINSMIEASKFLIGTHDFNAFKKSGGNLKT--TVRTITNINIL 179
Query: 206 EMGALLQLEVEGSGFLYRQVR 226
+ ++++ V G GFLY VR
Sbjct: 180 KSNDIVEIHVSGDGFLYNMVR 200
>sp|B2G8U7|TRUA_LACRJ tRNA pseudouridine synthase A OS=Lactobacillus reuteri (strain JCM
1112) GN=truA PE=3 SV=1
Length = 256
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 121/207 (58%), Gaps = 5/207 (2%)
Query: 25 FKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 84
+++++ YDGT ++G+Q Q + T++ ++ A+ ++ K + ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVIGSGRTDAGVHAL 61
Query: 85 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 144
QVAHF P+ ES+ ALN +LP DI +++ +FHAR+SA K Y Y++
Sbjct: 62 NQVAHFDIPYHLSN-ESMRKALNSILPLDILIKKAELVDNDFHARYSAHRKTYRYRVDQG 120
Query: 145 AVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDV 204
++PF+ +Y H Y LN MR+AA+ VG HDF++FV +A + V++I +
Sbjct: 121 EFVNPFKRNYTSHFKYPLNLEKMRKAADDLVGTHDFTSFV--ASGSQAKSNVRTIENITI 178
Query: 205 I--EMGALLQLEVEGSGFLYRQVRNMV 229
E+ + + G+GFLY QVR MV
Sbjct: 179 KRDEVRNEVVFDFTGNGFLYNQVRIMV 205
>sp|A5VLH4|TRUA_LACRD tRNA pseudouridine synthase A OS=Lactobacillus reuteri (strain DSM
20016) GN=truA PE=3 SV=1
Length = 256
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 121/207 (58%), Gaps = 5/207 (2%)
Query: 25 FKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAW 84
+++++ YDGT ++G+Q Q + T++ ++ A+ ++ K + ++G+ RTD GVHA
Sbjct: 2 YRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVIGSGRTDAGVHAL 61
Query: 85 GQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYND 144
QVAHF P+ ES+ ALN +LP DI +++ +FHAR+SA K Y Y++
Sbjct: 62 NQVAHFDIPYHLSN-ESMRKALNSILPLDILIKKAELVDNDFHARYSAHRKTYRYRVDQG 120
Query: 145 AVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDV 204
++PF+ +Y H Y LN MR+AA+ VG HDF++FV +A + V++I +
Sbjct: 121 EFVNPFKRNYTSHFKYPLNLEKMRKAADDLVGTHDFTSFV--ASGSQAKSNVRTIENITI 178
Query: 205 I--EMGALLQLEVEGSGFLYRQVRNMV 229
E+ + + G+GFLY QVR MV
Sbjct: 179 KRDEVRNEVVFDFTGNGFLYNQVRIMV 205
>sp|A4IJL9|TRUA_GEOTN tRNA pseudouridine synthase A OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=truA PE=3 SV=1
Length = 253
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 113/205 (55%), Gaps = 9/205 (4%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+ V+ YDGT ++G+Q Q T+Q E L R+ K +D+R+ + RTD GVHA+GQV
Sbjct: 6 KCVVAYDGTYFSGYQVQPGKRTVQGEFEGVLKRMHK--GDDVRITASGRTDAGVHAYGQV 63
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
HF TP + E ALN LP DI VR + A FHARFSAK+K Y Y ++ A
Sbjct: 64 IHFDTPLALSP-EQWKKALNAQLPDDIAVRSVDEADSTFHARFSAKAKEYRYNVWTAAER 122
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQR--NDRALNPVKSIFRFDVI 205
D F+ HY Y L M EA G HDF++F + + DR V++I++ ++
Sbjct: 123 DVFRRHYCAWHPYPLRVDAMSEALGLLKGTHDFTSFCSAKTVIEDR----VRTIYQAEME 178
Query: 206 EMGALLQLEVEGSGFLYRQVRNMVN 230
G +LQ GSGFLY VR +V
Sbjct: 179 VDGPMLQFRFVGSGFLYNMVRIIVG 203
>sp|O84469|TRUA_CHLTR tRNA pseudouridine synthase A OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=truA PE=3 SV=1
Length = 267
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 118/208 (56%), Gaps = 11/208 (5%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
K L I Y GT Y+GWQ+Q + +IQ ++E L ++ + ++ + RTD GVHA G
Sbjct: 4 KIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQG 60
Query: 86 QVAHFITP--FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 143
Q+AHF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDEDFHSRFSAIAKEYRYTL-- 118
Query: 144 DAVMDPFQHH--YAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFR 201
+ P HH + + YKLN M+EAA+Y VG HDF++F N+ R + +++++
Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSST--IRTLYT 176
Query: 202 FDVIEMGALLQLEVEGSGFLYRQVRNMV 229
D+ E L+ + G+GFLY+ VRN+V
Sbjct: 177 LDLSEQEHLVTVICRGNGFLYKMVRNIV 204
>sp|Q3A3B5|TRUA_PELCD tRNA pseudouridine synthase A OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=truA PE=3 SV=1
Length = 252
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 111/203 (54%), Gaps = 6/203 (2%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
RL+I YDGT Y GWQ Q + ++Q +VE+AL +V LV + RTD GVHA G V
Sbjct: 5 RLIIEYDGTPYVGWQRQPNGLSVQQVVEEALAKVCGGPHS---LVSSGRTDAGVHARGMV 61
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
AHF+TP + + +N LP I VR+ + +FHAR+SA K Y Y IY V
Sbjct: 62 AHFVTPQPLP-MAAYREGVNRFLPAQIAVRDAALMPDDFHARYSAVGKWYRYSIYRSPVR 120
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM 207
P +++H L+ MR+AA VG+HDF+AF A V+ +F D+++
Sbjct: 121 SPLACRFSWHVRTVLDLQAMRQAARLLVGRHDFAAFRA--SGCAARTTVREVFSVDIVDA 178
Query: 208 GALLQLEVEGSGFLYRQVRNMVN 230
+ ++V GSGFL VR MV
Sbjct: 179 EEWVYVDVRGSGFLRNMVRIMVG 201
>sp|B1MVY3|TRUA_LEUCK tRNA pseudouridine synthase A OS=Leuconostoc citreum (strain KM20)
GN=truA PE=3 SV=1
Length = 260
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 124/211 (58%), Gaps = 10/211 (4%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPP-----TIQCIVEKALIRVTKLEREDLRLVGASRTDTG 80
+++ ++ YDG+ + G+Q QT T+Q + KA+ ++ K +++VGASRTDTG
Sbjct: 3 RYKAIVAYDGSNFFGFQVQTKSGVEVQRTVQGELNKAVNQMAKQPVTPIKVVGASRTDTG 62
Query: 81 VHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYK 140
VHA+GQV HF PF + + + LN LLP DI ++ ++ +FHARFS +K Y Y+
Sbjct: 63 VHAFGQVVHFDLPFDINPV-GVSKGLNTLLPRDILIKAVTKVSDDFHARFSTHAKRYFYR 121
Query: 141 IYNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIF 200
+ A DPF+ HY H + L+T+ ++EA +G+HDF++F ++ + V++I
Sbjct: 122 VSTTAFTDPFKRHYTGHFHWHLDTSRIQEALPDLIGEHDFASFA--ASGNQTASTVRTIT 179
Query: 201 RFDVIEMGALLQL--EVEGSGFLYRQVRNMV 229
+IE +L EG+ FLY Q+R MV
Sbjct: 180 SAQLIEKPDEQELVFVFEGNAFLYNQIRIMV 210
>sp|C0ZIL2|TRUA_BREBN tRNA pseudouridine synthase A OS=Brevibacillus brevis (strain 47 /
JCM 6285 / NBRC 100599) GN=truA PE=3 SV=1
Length = 244
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 117/204 (57%), Gaps = 6/204 (2%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
+ R V+ YDGT ++G+Q Q T+Q +E AL RVT ED+++ G+ RTD GVHA G
Sbjct: 3 RLRCVLAYDGTDFSGFQVQPDQVTVQGEIEAALNRVTG---EDIQVFGSGRTDAGVHARG 59
Query: 86 QVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDA 145
QV HF T S ++ LN LP I +R + FHARF + K Y Y I N+
Sbjct: 60 QVIHFDTA-SNIPMDKWRFVLNNQLPDSIVIRTVEEVDASFHARFDVQVKEYRYCIDNNP 118
Query: 146 VMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI 205
V D F+H YA H + L+ M++AA Y VG+HDF++F + + + V++++ V
Sbjct: 119 VADVFRHRYADHVRFPLDVDAMQQAAHYLVGEHDFTSFCSAKT--YVEDKVRTVYGLSVE 176
Query: 206 EMGALLQLEVEGSGFLYRQVRNMV 229
++G + + G+GFLY VR +V
Sbjct: 177 KIGDEVWVTCRGNGFLYNMVRIIV 200
>sp|B5EFM8|TRUA_GEOBB tRNA pseudouridine synthase A OS=Geobacter bemidjiensis (strain Bem
/ ATCC BAA-1014 / DSM 16622) GN=truA PE=3 SV=1
Length = 250
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 108/199 (54%), Gaps = 6/199 (3%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+L+I YDGT Y GWQ Q + T+Q ++++AL + E L G+ RTD GVHA G V
Sbjct: 5 KLIIEYDGTAYCGWQVQPNGRTVQEVLQEAL---AAMLGEKTPLHGSGRTDAGVHARGMV 61
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
A F T + L + LN LLP DI VRE EFH RF A +K Y Y I D +
Sbjct: 62 ACFKTDKAMP-LRAFREGLNCLLPGDIAVREACEVPLEFHPRFDAHAKHYRYTILLDDLR 120
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM 207
P + KL+ MR A FVG+HDF+AF N A V+ I+ D+++
Sbjct: 121 SPLSRLTVWRLKGKLDIQAMRAACAAFVGEHDFAAFR--ASNCAAKTTVRRIYSMDLVQE 178
Query: 208 GALLQLEVEGSGFLYRQVR 226
G LL L+V+GSGFL VR
Sbjct: 179 GCLLHLDVKGSGFLKNMVR 197
>sp|B0BCA1|TRUA_CHLTB tRNA pseudouridine synthase A OS=Chlamydia trachomatis serovar L2b
(strain UCH-1/proctitis) GN=truA PE=3 SV=1
Length = 267
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 118/208 (56%), Gaps = 11/208 (5%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
K L I Y GT Y+GWQ+Q + +IQ +++ L ++ + ++ + RTD GVHA G
Sbjct: 4 KIVLQIAYQGTSYSGWQYQPNALSIQEVLKTILKKIAGFR---ISVISSGRTDAGVHAQG 60
Query: 86 QVAHFITP--FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 143
Q+AHF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL-- 118
Query: 144 DAVMDPFQHH--YAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFR 201
+ P HH + + YKLN M+EAA+Y VG HDF++F N+ R + +++++
Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSST--IRTLYT 176
Query: 202 FDVIEMGALLQLEVEGSGFLYRQVRNMV 229
D+ E L+ + G+GFLY+ VRN+V
Sbjct: 177 LDLSEQEHLVTVICRGNGFLYKMVRNIV 204
>sp|B0B836|TRUA_CHLT2 tRNA pseudouridine synthase A OS=Chlamydia trachomatis serovar L2
(strain 434/Bu / ATCC VR-902B) GN=truA PE=3 SV=1
Length = 267
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 118/208 (56%), Gaps = 11/208 (5%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
K L I Y GT Y+GWQ+Q + +IQ +++ L ++ + ++ + RTD GVHA G
Sbjct: 4 KIVLQIAYQGTSYSGWQYQPNALSIQEVLKTILKKIAGFR---ISVISSGRTDAGVHAQG 60
Query: 86 QVAHFITP--FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 143
Q+AHF P + I LN LLP DI +R+ +FH+RFSA +K Y Y +
Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALLPHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL-- 118
Query: 144 DAVMDPFQHH--YAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFR 201
+ P HH + + YKLN M+EAA+Y VG HDF++F N+ R + +++++
Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSST--IRTLYT 176
Query: 202 FDVIEMGALLQLEVEGSGFLYRQVRNMV 229
D+ E L+ + G+GFLY+ VRN+V
Sbjct: 177 LDLSEQEHLVTVICRGNGFLYKMVRNIV 204
>sp|B2UYE4|TRUA_CLOBA tRNA pseudouridine synthase A OS=Clostridium botulinum (strain
Alaska E43 / Type E3) GN=truA PE=3 SV=1
Length = 244
Score = 137 bits (346), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 112/202 (55%), Gaps = 6/202 (2%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+L+I +DGT + GWQ Q T+Q +E A++++T E G+SRTD GVHA V
Sbjct: 5 KLIIEFDGTNFCGWQRQVKDRTVQGCLENAILKITG---EKSLTNGSSRTDGGVHAKAMV 61
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
A+FIT S G E ALN LP DI + + EFHAR+S+K K+Y Y I N
Sbjct: 62 ANFITNSSIPG-EKFREALNTKLPDDISIIKSEEVDMEFHARYSSKGKMYSYTIVNRYEK 120
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM 207
F Y +H +LN M++A EYF+GKHDF AF + A V++I F + E
Sbjct: 121 LAFGKQYLHHVRKELNVEDMKKACEYFLGKHDFKAF--MSPGSSAKTTVRTITDFYIEEN 178
Query: 208 GALLQLEVEGSGFLYRQVRNMV 229
++++ + GFLY VR +V
Sbjct: 179 KNVIRIFISADGFLYNMVRIIV 200
>sp|Q3KLN5|TRUA_CHLTA tRNA pseudouridine synthase A OS=Chlamydia trachomatis serovar A
(strain HAR-13 / ATCC VR-571B) GN=truA PE=3 SV=1
Length = 267
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 117/208 (56%), Gaps = 11/208 (5%)
Query: 26 KWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWG 85
K L I Y GT Y+GWQ+Q + +IQ ++E L ++ + ++ + RTD GVHA G
Sbjct: 4 KIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFR---ISVISSGRTDAGVHAQG 60
Query: 86 QVAHFITP--FSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYN 143
Q+AHF P + I LN LLP DI + + +FH+RFSA +K Y Y +
Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALLPHDIVIHDAVMTDGDFHSRFSAIAKEYRYTL-- 118
Query: 144 DAVMDPFQHH--YAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFR 201
+ P HH + + YKLN M+EAA+Y VG HDF++F N+ R + +++++
Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSST--IRTLYT 176
Query: 202 FDVIEMGALLQLEVEGSGFLYRQVRNMV 229
D+ E L+ + G+GFLY+ VRN+V
Sbjct: 177 LDLSEQEHLVTVICRGNGFLYKMVRNIV 204
>sp|A6LLJ7|TRUA_THEM4 tRNA pseudouridine synthase A OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=truA PE=3 SV=1
Length = 244
Score = 137 bits (344), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 113/198 (57%), Gaps = 8/198 (4%)
Query: 33 YDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFIT 92
YDGT + G+Q Q + T+Q +EKAL R+ K E + GA RTD GVHA GQVA F
Sbjct: 10 YDGTNFFGYQGQPNVRTVQGELEKALERIFK---ERIFTQGAGRTDAGVHANGQVAAFNC 66
Query: 93 PFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQH 152
P I ALN LP DI V++ F+ RF AK +IYHY + + D F+
Sbjct: 67 PIDRLAAIDIKNALNANLPEDIYVKKAWEVEKNFNPRFRAKKRIYHYLVSTNE-KDVFKR 125
Query: 153 HYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEMGA-LL 211
+Y +H YKLN MR AA Y G+HDFS+F ++ + NP+++++R ++ + L+
Sbjct: 126 NYVWHFKYKLNIEAMRIAARYLEGEHDFSSF---KKGNDKKNPIRTVYRIRILNVKKELI 182
Query: 212 QLEVEGSGFLYRQVRNMV 229
+ VEG FL VRN+V
Sbjct: 183 LIRVEGRSFLRSMVRNIV 200
>sp|B7GJ99|TRUA_ANOFW tRNA pseudouridine synthase A OS=Anoxybacillus flavithermus (strain
DSM 21510 / WK1) GN=truA PE=3 SV=1
Length = 246
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 114/202 (56%), Gaps = 6/202 (2%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+ I YDGT +AG+Q Q T+Q +E+AL + K + +R+ + RTD VHA+GQV
Sbjct: 5 KCTIAYDGTNFAGYQIQQQKRTVQGELERALSIIHK--GQFVRVYASGRTDATVHAYGQV 62
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
HF TP + E ALN LLP D+ V+E S FHARFS K K Y Y+++
Sbjct: 63 IHFDTPLTIPD-ERWPKALNALLPDDVIVKEASEVPSSFHARFSVKKKEYRYRVWIGE-K 120
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM 207
+ F HY YH Y ++ M EA Y +G HDF++F + + + V++I+ +V++
Sbjct: 121 NVFLRHYVYHHPYDVSVPAMNEALRYLIGTHDFTSFCSAK--TEVDDKVRTIYEAEVVQE 178
Query: 208 GALLQLEVEGSGFLYRQVRNMV 229
G L + G+GFLY VR +V
Sbjct: 179 GEELIFRLVGNGFLYNMVRIIV 200
>sp|Q814C2|TRUA1_BACCR tRNA pseudouridine synthase A 1 OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=truA1 PE=3 SV=2
Length = 247
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 116/202 (57%), Gaps = 5/202 (2%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+ + YDG + G+Q Q + T+Q +EKAL ++ K E +R+ + RTD+ VHA GQV
Sbjct: 5 KCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGEL--VRVQASGRTDSTVHAKGQV 62
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
HF TP S + + +A LN +LP DI +R++ EFHAR+ + K Y Y++
Sbjct: 63 IHFDTPLSLEEWQWSNA-LNTMLPDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLSKTA 121
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM 207
D F+ +Y Y Y L +R+A YF+G HDF++F + + + + + V++I+ ++IE
Sbjct: 122 DVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKK--DKVRTIYEIELIEQ 179
Query: 208 GALLQLEVEGSGFLYRQVRNMV 229
+ G+GFLY VR +V
Sbjct: 180 DDEIIFRFVGNGFLYNMVRIIV 201
>sp|B2TIK9|TRUA_CLOBB tRNA pseudouridine synthase A OS=Clostridium botulinum (strain
Eklund 17B / Type B) GN=truA PE=3 SV=1
Length = 244
Score = 134 bits (338), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 113/202 (55%), Gaps = 6/202 (2%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+L+I +DGT + GWQ Q T+Q +EKA++++T E G+SRTD GVHA V
Sbjct: 5 KLIIEFDGTNFCGWQRQIKDRTVQGCLEKAILKITG---EKSLTNGSSRTDGGVHAKAMV 61
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
A+FIT S G E ALN LP DI V + +FHAR+S+K K+Y Y I N
Sbjct: 62 ANFITNSSIPG-EKFREALNTKLPDDIAVIKSEEVDMDFHARYSSKGKMYSYTIVNRYEK 120
Query: 148 DPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEM 207
F Y +H +LN M++A E F+GKHDF AF++ A V++I F + +
Sbjct: 121 LSFGKQYVHHVRKELNVEDMKKACECFIGKHDFKAFMS--PGSSAKTTVRTIQEFYIEKN 178
Query: 208 GALLQLEVEGSGFLYRQVRNMV 229
++++ + GFLY VR +V
Sbjct: 179 EDVIKIFISADGFLYNMVRIIV 200
>sp|A4XKB7|TRUA_CALS8 tRNA pseudouridine synthase A OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=truA
PE=3 SV=1
Length = 244
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 111/198 (56%), Gaps = 6/198 (3%)
Query: 29 LVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVA 88
L I YDGT Y GWQ Q + T+Q ++E A+ ++T ED+ LVG+ RTD GVHA GQ A
Sbjct: 6 LTIEYDGTNYFGWQKQPNKKTVQGVIEDAIKKITG---EDVNLVGSGRTDRGVHALGQKA 62
Query: 89 HFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMD 148
+F T S E ALN +LP DI +++ + +F AR+SAK K Y Y IYN
Sbjct: 63 NFKTE-SKIPTEKFPLALNSVLPNDISIKDAAEVSLDFSARYSAKQKTYKYLIYNHKFRP 121
Query: 149 PFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEMG 208
+Y YH Y+L+ M+++ EYF+G++DFS+F + + V+ IF +
Sbjct: 122 AILCNYVYHFPYELDLVSMQKSCEYFIGEYDFSSFCS--SGSETNSKVRRIFDCYLTFEN 179
Query: 209 ALLQLEVEGSGFLYRQVR 226
+ + + +GFLY R
Sbjct: 180 DCIAIYITANGFLYNMAR 197
>sp|C6BW69|TRUA_DESAD tRNA pseudouridine synthase A OS=Desulfovibrio salexigens (strain
ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=truA
PE=3 SV=1
Length = 271
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 118/206 (57%), Gaps = 10/206 (4%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+L+I YDGT + GWQ Q T+Q +EKA+ R+T +R+ G+ RTD+GVHA GQV
Sbjct: 5 KLIIAYDGTNFCGWQLQPKLRTVQGDLEKAITRITGTT---VRVHGSGRTDSGVHALGQV 61
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIY-NDAV 146
AHF + ++ ALN LLP D+ + + PEFH+R+SA K Y Y ++ ++
Sbjct: 62 AHFDVDSCFASVK-WQRALNSLLPDDVTILDAQLVSPEFHSRYSAIRKTYTYTLWLENSF 120
Query: 147 MDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI- 205
P++ HY + L+ + + +YF+G+HDFS+F N ++ V++I F
Sbjct: 121 FLPWRRHYVW-KCGPLDFCALDQGMQYFLGEHDFSSFQNTGTEIKS--TVRTIHEFKRYP 177
Query: 206 -EMGALLQLEVEGSGFLYRQVRNMVN 230
+ + LEV GSGFL + VRNMV
Sbjct: 178 GQTEQEMILEVCGSGFLKQMVRNMVG 203
>sp|B2A4Q5|TRUA_NATTJ tRNA pseudouridine synthase A OS=Natranaerobius thermophilus
(strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=truA
PE=3 SV=1
Length = 253
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 117/207 (56%), Gaps = 8/207 (3%)
Query: 28 RLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQV 87
+L I YDG+ Y G+Q Q + T+Q +EKAL V + + ASRTD+GVHA GQV
Sbjct: 5 KLTIAYDGSNYHGYQLQENAVTVQEKLEKALNTVYYPYK--ITPYSASRTDSGVHAKGQV 62
Query: 88 AHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVM 147
A+F P + I ALN LP DI + F AR A K Y Y +Y+ M
Sbjct: 63 ANFFAPKQIP-IHKIPLALNTNLPNDIAIINAEVVGSNFRARRDAIKKEYRYYVYHAPYM 121
Query: 148 DPFQHHYAYH-SVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVI- 205
DPF +YA H L+ T +++AA F+GKHDFS F IQ ++ +++PVK I+ FD+
Sbjct: 122 DPFWRNYALHYREQNLDYTKLQQAANDFIGKHDFSPFRAIQGSNPSIDPVKEIYEFDIDV 181
Query: 206 ---EMGALLQLEVEGSGFLYRQVRNMV 229
E G L+ +V G+ FLY+ VR +V
Sbjct: 182 NAGEDGNLIIFKVIGNAFLYKMVRILV 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,105,316
Number of Sequences: 539616
Number of extensions: 3694505
Number of successful extensions: 10602
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 8192
Number of HSP's gapped (non-prelim): 674
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)