Citrus Sinensis ID: 042710

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
GVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEMGALLQLEVEGSGFLYRQVRNMVNHSYCSRL
cccccccccccccccccccccccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccccEEEECcccccccHHHHHHHHHcccccccEEEEEEEccccccccccccccEEEEEEEcccccccccccCEEEEcccccHHHHHHHHHHccccccHHHHcccccccccccccEEEEEEEEEEEccEEEEEEEEccHHHHHHHHHHHHHHcccc
*********************FPGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEMGALLQLEVEGSGFLYRQVRNMVNHSYCSRL
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GVGVVGLEGTNNTVKPPTDDSFPGFKWRLVIGYDGTRYAGWQFQTSPPTIQCIVEKALIRVTKLEREDLRLVGASRTDTGVHAWGQVAHFITPFSYDGLESIHAALNGLLPPDIRVREISAAVPEFHARFSAKSKIYHYKIYNDAVMDPFQHHYAYHSVYKLNTTLMREAAEYFVGKHDFSAFVNIQRNDRALNPVKSIFRFDVIEMGALLQLEVEGSGFLYRQVRNMVNHSYCSRL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
tRNA pseudouridine synthase A 2 Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.probableQ6HNW5
tRNA pseudouridine synthase A Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.probableB2UYE4
tRNA pseudouridine synthase A Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.probableA3DJK8

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
5.-.-.-Isomerases.probable
5.4.-.-Intramolecular transferases (mutases).probable
5.4.99.-Transferring other groups.probable
5.4.99.12tRNA pseudouridine(38-40) synthase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1DJ0, chain A
Confidence level:very confident
Coverage over the Query: 22-234
View the alignment between query and template
View the model in PyMOL