BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042714
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 3 YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVF 62
+ +Y + V+TG +GTD+ I+I + A GR+ ++ L W H+ +E G+ + +
Sbjct: 6 HAIYNVEVETGDREHAGTDATITIRITGAKGRTDYL-KLDKW-----FHNDFEAGSKEQY 59
Query: 63 SGRGPCIGSPICNLNVSSDGSGMF---PSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR 119
+ +G +G I + + SDG G + P W+ V + S+ R F +W+
Sbjct: 60 TVQGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYSFPCF---RWVIKD 115
Query: 120 MPPFESTAVI 129
M F A +
Sbjct: 116 MVLFPGEATL 125
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 40.8 bits (94), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 5 VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSG 64
+Y + V+TG +GTD+ I+I + A GR+ ++ L W H+ +E G+ + ++
Sbjct: 375 IYNVEVETGDREHAGTDATITIRITGAKGRTDYL-KLDKW-----FHNDFEAGSKEQYTV 428
Query: 65 RGPCIGSPICNLNVSSDGSGMF---PSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMP 121
+G +G I + + SDG G + P W+ V + S+ R F +W+ M
Sbjct: 429 QGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYSFPCF---RWVIKDMV 484
Query: 122 PFESTAVI 129
F A +
Sbjct: 485 LFPGEATL 492
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
pdb|3VF1|B Chain B, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
Length = 698
Score = 35.0 bits (79), Expect = 0.014, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 6 YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGR 65
Y + V+TG +GTD+ +SI L G + ++ L H+ +E G D +
Sbjct: 22 YKITVETGDLRGAGTDASVSIKLTGKDG-----AETSAFSLDKYFHNDFESGGTDTYDQS 76
Query: 66 GPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRS-CDQSAFYVDQWLSSRMPPFE 124
G +G I + + +G G+ WY V + ++ F +W+ ++ +E
Sbjct: 77 GVDVGE-IAMITLKENGFGLKSDWYIAKVIIEKIDEATGFSNKYIFPCYRWVIKQLVVYE 135
Query: 125 STAVI 129
A++
Sbjct: 136 GKAIL 140
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 35.0 bits (79), Expect = 0.016, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 3 YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVF 62
+ +Y + V+TG +GTD+ I+I + A GR+ ++ K +E G+ + +
Sbjct: 6 HAIYNVEVETGDREHAGTDATITIRITGAKGRTDYLKLDKG---------SFEAGSKEQY 56
Query: 63 SGRGPCIGSPICNLNVSSDGSGMF---PSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR 119
+ +G +G I + + SDG G + P W+ V + S+ R F +W+
Sbjct: 57 TVQGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYSFPCF---RWVIKD 112
Query: 120 MPPFESTAVI 129
M F A +
Sbjct: 113 MVLFPGEATL 122
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 35.0 bits (79), Expect = 0.016, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 3 YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVF 62
+ +Y + V+TG +GTD+ I+I + A GR+ ++ K +E G+ + +
Sbjct: 6 HAIYNVEVETGDREHAGTDATITIRITGAKGRTDYLKLDKG---------SFEAGSKEQY 56
Query: 63 SGRGPCIGSPICNLNVSSDGSGMF---PSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR 119
+ +G +G I + + SDG G + P W+ V + S+ R F +W+
Sbjct: 57 TVQGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYSFPCF---RWVIKD 112
Query: 120 MPPFESTAVI 129
M F A +
Sbjct: 113 MVLFPGEATL 122
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 35.0 bits (79), Expect = 0.017, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 3 YCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVF 62
+ +Y + V+TG +GTD+ I+I + A GR+ ++ K +E G+ + +
Sbjct: 6 HAIYNVEVETGDREHAGTDATITIRITGAKGRTDYLKLDKG---------SFEAGSKEQY 56
Query: 63 SGRGPCIGSPICNLNVSSDGSGMF---PSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSR 119
+ +G +G I + + SDG G + P W+ V + S+ R F +W+
Sbjct: 57 TVQGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYSFPCF---RWVIKD 112
Query: 120 MPPFESTAVI 129
M F A +
Sbjct: 113 MVLFPGEATL 122
>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|B Chain B, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|C Chain C, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|D Chain D, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|E Chain E, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|F Chain F, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
Length = 264
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 91 CEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVIDGCGMSG 136
E E + GP + + ++ W S +P FE + ++ G SG
Sbjct: 200 LEVAERLAQGPKEALHHTKHALNHWYRSFLPHFELSLALEFLGFSG 245
>pdb|1T7V|A Chain A, Zn-Alpha-2-Glycoprotein; Baculo-Zag Peg 200
pdb|1T7W|A Chain A, Zn-Alpha-2-Glycoprotein; Cho-Zag Peg 400
pdb|1T7X|A Chain A, Zn-Alpha-2-Glycoprotein; Refolded Cho-Zag Peg 400
pdb|1T7Y|A Chain A, Zn-Alpha-2-Glycoprotein; Baculo-Zag Peg 200, No Glycerol
pdb|1T7Z|A Chain A, Zn-Alpha-2-Glycoprotein; Baculo-Zag No Peg, No Glycerol
pdb|1T80|A Chain A, Zn-Alpha-2-Glycoprotein; Cho-Zag Peg 200
Length = 278
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 51 HDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSC 105
+D+Y G +DV R + P +V +G+G + SW V T P+ SC
Sbjct: 208 YDFYP-GKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPY-SC 260
>pdb|1ZAG|B Chain B, Human Zinc-Alpha-2-Glycoprotein
pdb|1ZAG|A Chain A, Human Zinc-Alpha-2-Glycoprotein
pdb|1ZAG|C Chain C, Human Zinc-Alpha-2-Glycoprotein
pdb|1ZAG|D Chain D, Human Zinc-Alpha-2-Glycoprotein
Length = 274
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 51 HDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSC 105
+D+Y G +DV R + P +V +G+G + SW V T P+ SC
Sbjct: 204 YDFYP-GKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPY-SC 256
>pdb|3ES6|A Chain A, Crystal Structure Of The Novel Complex Formed Between Zinc
2- Glycoprotein (Zag) And Prolactin Inducible Protein
(Pip) From Human Seminal Plasma
Length = 278
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 51 HDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSC 105
+D+Y G +DV R + P +V +G+G + SW V T P+ SC
Sbjct: 208 YDFYP-GKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPY-SC 260
>pdb|3IJI|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJI|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJL|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Pro-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJL|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Pro-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJQ|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu; Productive
Substrate Binding.
pdb|3IJQ|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu; Productive
Substrate Binding
Length = 338
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 9 YVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGL 46
YV + S + + + IAL D VG+ + P K WGL
Sbjct: 81 YVDSLSPKDTAAKAAVDIALHDLVGKLLGAPWYKIWGL 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,256,588
Number of Sequences: 62578
Number of extensions: 223000
Number of successful extensions: 382
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 16
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)