Query 042714
Match_columns 149
No_of_seqs 104 out of 717
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01754 PLAT_plant_stress PLAT 100.0 9.1E-41 2E-45 241.8 15.2 127 4-130 1-128 (129)
2 cd01752 PLAT_polycystin PLAT/L 100.0 2.4E-36 5.2E-41 216.3 15.8 117 4-129 1-117 (120)
3 cd01756 PLAT_repeat PLAT/LH2 d 100.0 9.9E-35 2.1E-39 207.9 15.6 115 5-129 2-117 (120)
4 cd01753 PLAT_LOX PLAT domain o 100.0 2.6E-34 5.7E-39 204.0 13.1 105 5-120 2-106 (113)
5 cd01757 PLAT_RAB6IP1 PLAT/LH2 100.0 1.8E-31 3.9E-36 189.4 14.7 105 5-128 2-112 (114)
6 cd00113 PLAT PLAT (Polycystin- 100.0 6.4E-31 1.4E-35 186.0 14.5 109 4-122 1-109 (116)
7 cd02899 PLAT_SR Scavenger rece 100.0 7.6E-31 1.6E-35 184.9 13.5 105 5-129 2-106 (109)
8 PF01477 PLAT: PLAT/LH2 domain 100.0 2.8E-29 6E-34 175.9 9.7 112 6-129 1-112 (113)
9 smart00308 LH2 Lipoxygenase ho 100.0 1.9E-28 4.2E-33 170.7 13.8 104 4-118 1-104 (105)
10 PF06232 ATS3: Embryo-specific 99.9 3.1E-22 6.7E-27 143.2 12.6 109 2-124 12-121 (125)
11 cd01755 PLAT_lipase PLAT/ LH2 99.8 1.3E-19 2.7E-24 129.9 12.5 95 4-110 1-102 (120)
12 cd01758 PLAT_LPL PLAT/ LH2 dom 99.7 3.2E-16 7E-21 114.6 11.9 96 4-110 1-116 (137)
13 KOG2080 Uncharacterized conser 99.4 8E-14 1.7E-18 124.1 5.0 98 4-122 974-1071(1295)
14 cd01759 PLAT_PL PLAT/LH2 domai 99.1 2.2E-09 4.8E-14 76.2 11.2 95 5-114 2-99 (113)
15 TIGR03230 lipo_lipase lipoprot 98.5 2.4E-06 5.3E-11 73.3 12.1 96 3-110 308-412 (442)
16 cd01751 PLAT_LH2 PLAT/ LH2 dom 89.5 2.3 5E-05 31.1 7.0 54 61-120 71-126 (137)
17 PLN02337 lipoxygenase 79.1 15 0.00032 34.7 8.8 54 61-120 96-151 (866)
18 PLN02264 lipoxygenase 76.5 18 0.00038 34.3 8.5 53 61-120 159-213 (919)
19 PLN02305 lipoxygenase 72.9 27 0.00058 33.1 8.7 53 61-120 155-209 (918)
20 PF05641 Agenet: Agenet domain 24.6 97 0.0021 19.3 2.8 25 74-98 5-29 (68)
21 PF09671 Spore_GerQ: Spore coa 21.7 1.1E+02 0.0023 20.4 2.5 56 53-119 15-75 (81)
No 1
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=9.1e-41 Score=241.81 Aligned_cols=127 Identities=54% Similarity=1.037 Sum_probs=114.9
Q ss_pred eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEeccccc-CccCCCccccccCCccEEEeecCCCCCCcEEEEEEecC
Q 042714 4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSW-GLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDG 82 (149)
Q Consensus 4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~-~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~ 82 (149)
|.|+|+|+||++++|||+|||+|.|+|++|++.++.++++| +|.++..+.||||++|+|.|+.++++|+|++|+||||+
T Consensus 1 ~~Y~I~V~TG~~~gAGTdanV~i~l~G~~G~s~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~l~~irI~HDn 80 (129)
T cd01754 1 CVYTIYVQTGSIWKAGTDSRISLQIYDADGPGLRIANLEAWGGLMGAGHDYFERGNLDRFSGRGPCLPSPPCWMNLTSDG 80 (129)
T ss_pred CEEEEEEEECCCcccCCcceEEEEEEeCCCCcccEEcccccccccccccccccCCCccEEEEEeccCCCCeEEEEEEECC
Confidence 78999999999999999999999999999999998765444 45566788999999999999999989999999999999
Q ss_pred CCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCceEEEEe
Q 042714 83 SGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVID 130 (149)
Q Consensus 83 ~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~~~~~~~ 130 (149)
+|..|+|||++|+|++.+++..++.|+|||+|||+.|+.|+.++++++
T Consensus 81 ~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~~~~~~~~~~ 128 (129)
T cd01754 81 TGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDESPYMLTAVRN 128 (129)
T ss_pred CCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCCcceeEEEec
Confidence 999999999999999987622245899999999999999999998875
No 2
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=2.4e-36 Score=216.30 Aligned_cols=117 Identities=29% Similarity=0.373 Sum_probs=107.3
Q ss_pred eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714 4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS 83 (149)
Q Consensus 4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~ 83 (149)
+.|+|+|+||+..+|||+|+|+|+|+|++|++.++. |.++..+.||||++++|.+..+.++|+|.+|+||||++
T Consensus 1 ~~Y~v~v~Tg~~~gAGT~a~V~i~L~G~~g~s~~~~------L~~~~~~~F~rG~~~~f~i~~~~dlG~l~~i~l~hd~~ 74 (120)
T cd01752 1 YLYLVTVFTGWRRGAGTTAKVTITLYGAEGESEPHH------LRDPEKPIFERGSVDSFLLTTPFPLGELQSIRLWHDNS 74 (120)
T ss_pred CEEEEEEEECCCCCCCcccEEEEEEEeCCCCcccEE------cCCCCccceeCCCeeEEEecCccCCCCccEEEEEECCC
Confidence 579999999999999999999999999999998886 45566689999999999999987799999999999999
Q ss_pred CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCceEEEE
Q 042714 84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVI 129 (149)
Q Consensus 84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~~~~~~ 129 (149)
|..++|||++|+|++.++ ++.|.|||++||+.+++|+...++.
T Consensus 75 g~~~~W~l~~V~V~~~~t---~~~~~F~~~rWl~~~~~d~~~~r~~ 117 (120)
T cd01752 75 GLSPSWYLSRVIVRDLQT---GKKWFFLCNDWLSVEEGDGTVERTF 117 (120)
T ss_pred CCCCCeEEEEEEEEECCC---CcEEEEEeCcEECCcCCCCEEEEEE
Confidence 999999999999999886 8999999999999999987654443
No 3
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=9.9e-35 Score=207.85 Aligned_cols=115 Identities=24% Similarity=0.395 Sum_probs=104.6
Q ss_pred EEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCC-CccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714 5 VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGP-HHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS 83 (149)
Q Consensus 5 ~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~-~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~ 83 (149)
.|+|+|.||++.+|||+|+|+|+|+|++|++..+. |+++ ..+.||||++|+|.+++ .++|+|++|+||||+.
T Consensus 2 ~Y~v~v~TG~~~~AGT~a~V~i~L~G~~g~s~~~~------L~~~~~~~~FerGs~d~F~i~~-~~lG~l~~i~i~~d~~ 74 (120)
T cd01756 2 TYEVTVKTGDVKGAGTDANVFITLYGENGDTGKRK------LKKSNNKNKFERGQTDKFTVEA-VDLGKLKKIRIGHDNS 74 (120)
T ss_pred EEEEEEEECCCcCCCCCcEEEEEEEeCCCccccEE------ccCCCcCCcccCCCeEEEEEEe-cCCCCeEEEEEEECCC
Confidence 79999999999999999999999999999998887 4444 67899999999999999 4599999999999999
Q ss_pred CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCceEEEE
Q 042714 84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVI 129 (149)
Q Consensus 84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~~~~~~ 129 (149)
|..++|||++|+|+++++ ++.|.|||++||+.+++|+...++.
T Consensus 75 g~~~~W~~~~V~V~~~~~---~~~~~F~~~~Wl~~~~~dg~~~r~~ 117 (120)
T cd01756 75 GLGAGWFLDKVEIREPGT---GDEYTFPCNRWLDKDEDDGQIVREL 117 (120)
T ss_pred CCCCCcEEeEEEEEECCC---ceEEEEEeCCccCCCCCCCEEEEEE
Confidence 999999999999999886 8999999999999999986654443
No 4
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=100.00 E-value=2.6e-34 Score=204.00 Aligned_cols=105 Identities=29% Similarity=0.451 Sum_probs=96.5
Q ss_pred EEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCCC
Q 042714 5 VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSG 84 (149)
Q Consensus 5 ~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~g 84 (149)
.|+|+|+||+..+|||+|+|+|.|+|++|+|.++. |+++.. +||||++|+|.++.+.++|+|++|+||||++|
T Consensus 2 ~Y~V~V~Tg~~~~AGT~a~V~i~l~G~~g~S~~~~------L~~~~~-~FerG~~d~F~v~~~~~lG~l~~i~i~~d~~g 74 (113)
T cd01753 2 EYKVTVATGSSLFAGTDDYIYLTLVGTAGESEKQL------LDRPGY-DFERGAVDEYKVKVPEDLGELLLVRLRKRKYL 74 (113)
T ss_pred EEEEEEEECCCcCCccccEEEEEEEECCCcccCEE------cCCCCC-ccCCCCeeEEEEecccCCCCcEEEEEEECCCC
Confidence 69999999999999999999999999999998887 444443 59999999999999888999999999999999
Q ss_pred CCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714 85 MFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM 120 (149)
Q Consensus 85 ~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~ 120 (149)
..|+|||++|+|++++ ++.|.|||++||++++
T Consensus 75 ~~~~W~l~~V~V~~~~----~~~~~F~c~rWl~~~~ 106 (113)
T cd01753 75 LFDAWFCNYITVTGPG----GDEYHFPCYRWIEGYG 106 (113)
T ss_pred CCCCeeecEEEEEcCC----CCEEEEEhHHeECCCC
Confidence 9999999999999875 6899999999998764
No 5
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=99.98 E-value=1.8e-31 Score=189.38 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=91.2
Q ss_pred EEEEEEEcCCC-CCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714 5 VYTLYVKTGSG-IKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS 83 (149)
Q Consensus 5 ~Y~V~V~Tg~~-~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~ 83 (149)
.|+|+|+||+. ++|||+|||+|.|+|++|+|.+.. |++ +.| .|.+.. .+||+|.+|+||||++
T Consensus 2 ~Y~VtV~TG~~~~gAGT~anV~i~L~G~~g~s~~~~------L~~---~~f------~~~v~~-~~LG~L~~irIwHDns 65 (114)
T cd01757 2 PYHVVIVPSKKLGGSMFTANPWICVSGELGETPPLQ------IPK---NSL------EMTFDC-QNLGKLTTVQIGHDNS 65 (114)
T ss_pred eEEEEEEeCCCCCCCCCcceEEEEEEEcCCCcCCEE------ecC---Cce------EEEEec-CCcCCcEEEEEEECCC
Confidence 69999999999 599999999999999999998886 322 233 466655 5599999999999999
Q ss_pred CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCC-----CceEEE
Q 042714 84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPP-----FESTAV 128 (149)
Q Consensus 84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~-----~~~~~~ 128 (149)
|..|+|||++|+|+++++ ++.|+|||+|||+.+++| +++.++
T Consensus 66 G~~~~Wfl~~V~V~d~~t---~~~~~FpC~rWLa~~~~D~~~~~g~~~r~ 112 (114)
T cd01757 66 GLLAKWLVEYVMVRNEIT---GHTYKFPCGRWLGEGVDDGNGEDGSLERV 112 (114)
T ss_pred CCCCCeeeeEEEEEeCCC---CCEEEEecCceecCCCCcccccCCeEEEE
Confidence 999999999999999876 899999999999999998 665554
No 6
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=99.97 E-value=6.4e-31 Score=186.02 Aligned_cols=109 Identities=34% Similarity=0.507 Sum_probs=98.8
Q ss_pred eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714 4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS 83 (149)
Q Consensus 4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~ 83 (149)
|.|+|+|+||++.+|||+++|+|.|+|++|++.++.++ ++... ||||++++|.++.+.++|+|++|+|+||+.
T Consensus 1 ~~Y~v~V~Tg~~~~agT~~~v~i~l~g~~g~s~~~~l~------~~~~~-f~~g~~~~f~v~~~~~lG~i~~v~l~~d~~ 73 (116)
T cd00113 1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPIL------DGPGS-FERGSTDTFQIDLKLDIGDITKVYLRRDGS 73 (116)
T ss_pred CEEEEEEEECCCCCCCccCEEEEEEEeCCCCcccEEcc------CCCCc-ccCCCceEEEEeccCCCcCeEEEEEEECCC
Confidence 68999999999999999999999999999999988742 22222 999999999999997799999999999999
Q ss_pred CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCC
Q 042714 84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPP 122 (149)
Q Consensus 84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~ 122 (149)
|..|+|||++|+|++.++ ++.+.|+|++||+.+..+
T Consensus 74 g~~~~W~l~~V~V~~~~~---~~~~~F~~~~Wl~~~~~~ 109 (116)
T cd00113 74 GLSDGWYCESITVQALGT---KKVYTFPVNRWVLGGKWY 109 (116)
T ss_pred CCCCCEEEeEEEEEeCCC---CCEEEEEeCCCcccCCCC
Confidence 999999999999999876 789999999999987663
No 7
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=99.97 E-value=7.6e-31 Score=184.91 Aligned_cols=105 Identities=28% Similarity=0.457 Sum_probs=91.1
Q ss_pred EEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCCC
Q 042714 5 VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSG 84 (149)
Q Consensus 5 ~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~g 84 (149)
.|+|+|.||+..+|||+++|+|+|+|++|++.+..+ . +.|+||++|+|.++ +.+||+|..|+|. +.+
T Consensus 2 ~Y~I~V~TG~~~~AGT~~~V~i~L~G~~g~S~~~~L------~----~~F~~G~~d~F~v~-~~dLG~l~~i~l~--n~g 68 (109)
T cd02899 2 TYTASVQTGKDKEAGTNGTIEITLLGSSGRSNPKTL------S----QGFYPGSLKRIRFR-AADVGDINAIILS--NTA 68 (109)
T ss_pred eEEEEEEECCCCCCCccceEEEEEEECCCCcCCEEc------c----CccCCCceEEEEEC-ccccCceEEEEEE--CCC
Confidence 699999999999999999999999999999998873 2 35999999999999 7779999999995 445
Q ss_pred CCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCceEEEE
Q 042714 85 MFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVI 129 (149)
Q Consensus 85 ~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~~~~~~ 129 (149)
..++|||++|+|+++ + ++.|.|||+|||+. ||...+..
T Consensus 69 ~~~~Wf~~~V~V~~~-~---g~~~~Fpc~rWla~---~~~~~v~~ 106 (109)
T cd02899 69 LNDPWYCDYVRIKSE-D---GKVFAFNVKRWIGY---PYEQSVEV 106 (109)
T ss_pred CCCCceeeEEEEECC-C---CCEEEEEcceeeCC---chhceEEE
Confidence 899999999999984 3 78999999999994 44444443
No 8
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.96 E-value=2.8e-29 Score=175.94 Aligned_cols=112 Identities=30% Similarity=0.462 Sum_probs=98.4
Q ss_pred EEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCCCC
Q 042714 6 YTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSGM 85 (149)
Q Consensus 6 Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~g~ 85 (149)
|+|+|+||+..+|||+|+|+|.|+|++|++....+++ +....+ |++|+|.++.+.++|+|.+|+|+|++.+.
T Consensus 1 Y~v~v~Tg~~~~aGT~~~V~i~l~G~~g~s~~~~l~~------~~~~~~--g~~d~F~i~~~~~lG~i~~i~i~~~~~~~ 72 (113)
T PF01477_consen 1 YRVTVKTGDERGAGTDANVYITLYGSKGKSGEIELLD------PSGFNF--GSTDTFTIETPEDLGEIQKIRIWHDGSGP 72 (113)
T ss_dssp EEEEEEEESSTEEEESSEEEEEEEETTEEEEEEEEEE------EEETST--TEEEEEEEEESSCGCSEEEEEEEEESSSS
T ss_pred CEEEEEECCCCCCCcCCeEEEEEEECCCCcceEEEee------eeeccc--CceEEeeeeecccCCCCcEEEEEEccCCC
Confidence 9999999999999999999999999999999887532 222222 99999999997779999999999999999
Q ss_pred CCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCceEEEE
Q 042714 86 FPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFESTAVI 129 (149)
Q Consensus 86 ~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~~~~~~ 129 (149)
.++|||++|+|.+..+ ++.|.|||++||..+. ++..+++.
T Consensus 73 ~~~W~l~~V~V~~~~~---~~~~~F~~~~Wl~~~~-~~~~~rvf 112 (113)
T PF01477_consen 73 SPSWYLDSVVVTDGET---GRTYTFPCNRWLDPDK-DYKTERVF 112 (113)
T ss_dssp SSEEEEEEEEEEETTT---SEEEEEEEEEEESTTE-GCSSEEEE
T ss_pred ccceEEEEEEEEeCCC---CcEEEEEcCCEECCCC-CCCCccEE
Confidence 9999999999999765 8999999999999887 66666653
No 9
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.96 E-value=1.9e-28 Score=170.65 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=90.8
Q ss_pred eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714 4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS 83 (149)
Q Consensus 4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~ 83 (149)
+.|+|+|.||+..+|||+|+|+|.|+|++|.+..... .......|+||++++|.++.+.++|+|.+|+|+||++
T Consensus 1 ~~Y~v~V~Tg~~~~aGT~~~V~l~L~g~~~~s~~~~~------~~~~~~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~ 74 (105)
T smart00308 1 GKYKVTVTTGGLDFAGTTASVSLSLVGAEGDGKESKL------DYLFKGIFARGSTYEFTFDVDEDFGELGAVKIKNEHR 74 (105)
T ss_pred CEEEEEEEECCccCCCccceEEEEEEeCCCCCcceec------cccCCccccCCceEEEEEecccCCCCcEEEEEEeCCC
Confidence 4799999999999999999999999999976554432 1112345999999999999988899999999999997
Q ss_pred CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeec
Q 042714 84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSS 118 (149)
Q Consensus 84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~ 118 (149)
.++|||++|+|++.++ ++.+.|||++||..
T Consensus 75 --~~~w~l~~V~V~~~~~---~~~~~F~c~~Wl~~ 104 (105)
T smart00308 75 --HPEWFLKSITVKDLPT---GGKYHFPCNSWVYP 104 (105)
T ss_pred --CCCeEEEEEEEEECCC---CCEEEEEcCceeCC
Confidence 7999999999999865 78999999999975
No 10
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=99.89 E-value=3.1e-22 Score=143.23 Aligned_cols=109 Identities=38% Similarity=0.688 Sum_probs=98.2
Q ss_pred CceEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCc-cccccCCccEEEeecCCCCCCcEEEEEEe
Q 042714 2 DYCVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHH-DYYERGNVDVFSGRGPCIGSPICNLNVSS 80 (149)
Q Consensus 2 ~~~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~-~~FerG~~d~F~v~~~~~lG~i~~i~l~~ 80 (149)
+.|.|+|+|+|++...|||+++|.|.|.++.|+...... |++|.. ..|||+++|+|.+.++| +..||+|.|.+
T Consensus 12 ~~CsYtv~IkTsC~s~a~T~d~Isi~FgDa~Gn~v~~~~-----Ld~p~~~~~FErCs~DtF~v~G~C-~~~IC~lyL~r 85 (125)
T PF06232_consen 12 GSCSYTVTIKTSCSSPAGTDDQISIAFGDAYGNQVYVPR-----LDDPGSGDTFERCSTDTFQVTGPC-LYQICYLYLYR 85 (125)
T ss_pred CCCcEEEEEEeCcCCCcCCcceEEEEEecCCCCEEEEcc-----CCCCCccCchhcCCcceeEeeccc-CCcccEEEEEE
Confidence 569999999999999999999999999999999998887 677877 89999999999999999 78999999999
Q ss_pred cCCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCCCc
Q 042714 81 DGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPPFE 124 (149)
Q Consensus 81 d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~~~ 124 (149)
.+. ++|++++|+|.... .+...|.+++||..+ .+|+
T Consensus 86 ~G~---dGW~Pe~V~Iy~~~----~~~~~F~~~~~lp~~-vwyG 121 (125)
T PF06232_consen 86 SGS---DGWKPEWVQIYGSG----SKPVTFYFNTFLPNG-VWYG 121 (125)
T ss_pred ccC---CCCEeCeEEEEEcC----CCCeEEECCCcCCCC-Cccc
Confidence 765 79999999999864 467999999999964 4444
No 11
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.83 E-value=1.3e-19 Score=129.85 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=85.2
Q ss_pred eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714 4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS 83 (149)
Q Consensus 4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~ 83 (149)
+.|+|+|.||...+|||+++|+|.|+|++|++..+.+ .. ..|++|++++|.|..+.++|+|.+|++|||++
T Consensus 1 ~hY~vtV~~~~~~~agt~~~v~v~L~G~~g~s~~~~l------~~---~~~~~g~~~sfli~t~~~lG~l~~v~~~~dn~ 71 (120)
T cd01755 1 WHYQVKVHLSGKKNLEVDGTFTVSLYGTKGETEQLPI------VL---GELKPNKTYSFLIDTEVDIGDLLKVKFKWENN 71 (120)
T ss_pred CEEEEEEEEeCccccCcCccEEEEEEcCCCCcccEEE------eC---CcccCCCEEEEEEEcCCCccceEEEEEEEcCC
Confidence 5899999999999999999999999999999999874 22 24799999999999999999999999999999
Q ss_pred C--C-----CCCeEEEEEEEEeCCCCCCCceEEE
Q 042714 84 G--M-----FPSWYCEYVEVTSTGPHRSCDQSAF 110 (149)
Q Consensus 84 g--~-----~~~W~l~~V~V~~~~t~~~~~~~~F 110 (149)
+ . .|+|++++|.|++.++ ++.+.|
T Consensus 72 ~~~~~~~~~~p~~~~~~I~Vq~get---~~~~~F 102 (120)
T cd01755 72 VINSNSGETLPKLGARKIRVKSGET---QKKFTF 102 (120)
T ss_pred CcccccccCCCcEEEEEEEEEECCC---CCEEEE
Confidence 8 3 6899999999999886 565655
No 12
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.70 E-value=3.2e-16 Score=114.61 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=83.4
Q ss_pred eEEEEEEEcCCCCCCC-CCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEE-Eec
Q 042714 4 CVYTLYVKTGSGIKSG-TDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNV-SSD 81 (149)
Q Consensus 4 ~~Y~V~V~Tg~~~~AG-T~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l-~~d 81 (149)
|.|+|+|.|+....|| |+++|+|.|+|++|++..+.+ ..+ ..+++|++++|.|+++.++|+|.+|++ ||+
T Consensus 1 yhYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~S~~~~l------~~~--~~~~~G~t~sfLi~t~~dlG~L~~vk~~W~~ 72 (137)
T cd01758 1 FHYQLKIHFFNQTNRIETDPTFTISLYGTLGESENLPL------TLP--EGITGNKTNSFLITTEKDIGDLLMLKLKWEG 72 (137)
T ss_pred CeEEEEEEEecccCCCcccceEEEEEEcCCCcccCEEE------ecC--cccCCCCeEEEEEECCCCcCCEEEEEEEEeC
Confidence 6899999999999999 999999999999999999874 222 456999999999999999999999999 999
Q ss_pred CCCCCCCeE------------------EEEEEEEeCCCCCCCceEEE
Q 042714 82 GSGMFPSWY------------------CEYVEVTSTGPHRSCDQSAF 110 (149)
Q Consensus 82 ~~g~~~~W~------------------l~~V~V~~~~t~~~~~~~~F 110 (149)
+.+..++|+ +++|.|+..++ .+.+.|
T Consensus 73 n~~~~~sW~~~~~~~~~~~~~~~p~l~~~~I~Vk~GEt---q~~~~F 116 (137)
T cd01758 73 SSLWSNSWWTVQTIIPWSGWWRGSGLTIRKIRVKAGET---QKKMTF 116 (137)
T ss_pred CCCCChhhhccccccccccccCCCeEEEEEEEEEeCCC---ccEEEE
Confidence 999888885 78899998765 455555
No 13
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=99.44 E-value=8e-14 Score=124.09 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=83.1
Q ss_pred eEEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCC
Q 042714 4 CVYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGS 83 (149)
Q Consensus 4 ~~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~ 83 (149)
-.|.|.|.|| .+.|+.+||||.+.|+.+++.++.+. ++ +-.|.+.... +|.+..++|+||++
T Consensus 974 ~~Y~vvIv~~--~g~~~~~~iWi~vsGsl~eT~~i~~~-------~n--------~~~f~F~~kN-LG~LtT~rIGHdnS 1035 (1295)
T KOG2080|consen 974 MDYQVVIVTG--SGRGAIPAIWVTVEGSLCSTPPIMLK-------PN--------TPLFKFDHKN-LGILSTLRIGHQQS 1035 (1295)
T ss_pred cceEEEEEeC--CCCcccCceEEEEecccCCCCceeeC-------CC--------CceeEEeccc-cceeeeEEecccCC
Confidence 3599999999 68899999999999999999888741 11 1235555555 99999999999999
Q ss_pred CCCCCeEEEEEEEEeCCCCCCCceEEEecceeeecccCC
Q 042714 84 GMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRMPP 122 (149)
Q Consensus 84 g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~~~ 122 (149)
|+...||+++|.|++.-| |++|.|||.+|++..+..
T Consensus 1036 ~~~~kW~vEyV~vRNEiT---G~TYKFPCGrw~G~gedi 1071 (1295)
T KOG2080|consen 1036 EKPVQWFLEYVLVRNEIT---GQTYKFPCGRWFGNGEDI 1071 (1295)
T ss_pred CcchHHHHHHhhhhceec---cceeccccccccCCcccc
Confidence 999999999999999876 999999999999876543
No 14
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=99.09 E-value=2.2e-09 Score=76.16 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=77.6
Q ss_pred EEEEEEEcCCCCCCCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEecCCC
Q 042714 5 VYTLYVKTGSGIKSGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSDGSG 84 (149)
Q Consensus 5 ~Y~V~V~Tg~~~~AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d~~g 84 (149)
+|+|+|.-++... ++..++|.|+|.+|++..+.+ . ...|++|++.+|.|+.+.++|+|.+|.+.+++..
T Consensus 2 ~Yqv~V~~s~~~~--~~g~~~vsL~G~~g~s~~~~i------~---~g~l~pg~tys~li~~d~dvG~l~~Vkf~W~~~~ 70 (113)
T cd01759 2 RYKVSVTLSGKKK--VTGTILVSLYGNKGNTRQYEI------F---KGTLKPGNTYSAFIDVDVDVGPLTKVKFIWNNNV 70 (113)
T ss_pred eEEEEEEEecccc--cCceEEEEEEcCCCCccceEE------E---eeeecCCCEEEEEEEccCCCCCEEEEEEEEeCCc
Confidence 6999998877643 889999999999999998874 1 2359999999999999999999999999998887
Q ss_pred CC---CCeEEEEEEEEeCCCCCCCceEEEecce
Q 042714 85 MF---PSWYCEYVEVTSTGPHRSCDQSAFYVDQ 114 (149)
Q Consensus 85 ~~---~~W~l~~V~V~~~~t~~~~~~~~F~~~~ 114 (149)
.+ |.-++++|.|+..++ ++.+.| |.+
T Consensus 71 ~n~~~p~~~~~~I~Vq~Ge~---~~~~~F-C~~ 99 (113)
T cd01759 71 INITLPKVGAEKITVQSGKD---GKVFNF-CSS 99 (113)
T ss_pred cCCCCCeEEEEEEEEEeCCC---ccEEEE-CCC
Confidence 65 455599999998764 454544 543
No 15
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.48 E-value=2.4e-06 Score=73.31 Aligned_cols=96 Identities=14% Similarity=0.060 Sum_probs=78.6
Q ss_pred ceEEEEEEEcCCCCC-CCCCceeEEEEEeCCCCeeEEecccccCccCCCccccccCCccEEEeecCCCCCCcEEEEEEec
Q 042714 3 YCVYTLYVKTGSGIK-SGTDSKISIALGDAVGRSVWVPDLKSWGLMGPHHDYYERGNVDVFSGRGPCIGSPICNLNVSSD 81 (149)
Q Consensus 3 ~~~Y~V~V~Tg~~~~-AGT~anV~i~l~G~~G~s~~~~~l~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~i~~i~l~~d 81 (149)
.+.|+|+|...+... ++++..++|.|+|.+|++..+.+ . ...++.|.+.+|.|+.+.++|+|.+|.+.++
T Consensus 308 ~~~y~v~v~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~------~---~~~~~~~~t~~~~i~~~~~~g~~~~v~~~w~ 378 (442)
T TIGR03230 308 VFHYQVKVHFFGKTSLSHTDQPMKISLYGTHGEKENIPF------T---LPEVSTNKTYSFLITTDVDIGELLMVKLKWE 378 (442)
T ss_pred EEEEEEEEEEeccccccccCCcEEEEEEcCCCCccceEE------e---eeeecCCCeEEEEEecccCCCceEEEEEEEe
Confidence 468999999987643 47899999999999999998874 1 2359999999999999999999999999998
Q ss_pred CCCC--------CCCeEEEEEEEEeCCCCCCCceEEE
Q 042714 82 GSGM--------FPSWYCEYVEVTSTGPHRSCDQSAF 110 (149)
Q Consensus 82 ~~g~--------~~~W~l~~V~V~~~~t~~~~~~~~F 110 (149)
+... .|.-++++|+|+..++ .+.+.|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~i~v~~ge~---~~~~~f 412 (442)
T TIGR03230 379 KDTYISWSDWWSSPGFHIRKLRIKSGET---QSKVIF 412 (442)
T ss_pred CCCcccchhhhcCCceeEEEEEEEeCCC---ccEEEE
Confidence 7753 3555699999998765 555555
No 16
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=89.47 E-value=2.3 Score=31.09 Aligned_cols=54 Identities=11% Similarity=0.308 Sum_probs=39.9
Q ss_pred EEEee--cCCCCCCcEEEEEEecCCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714 61 VFSGR--GPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM 120 (149)
Q Consensus 61 ~F~v~--~~~~lG~i~~i~l~~d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~ 120 (149)
.|.++ .+.++|.+=.|.|...-. .--||..|+|.+... .....|+||.|+....
T Consensus 71 ~y~~~F~v~~~fG~pGAi~V~N~h~---~EffLksitLe~~p~---~g~v~F~CNSWVyp~~ 126 (137)
T cd01751 71 AYEAEFEVPASFGPPGAVLVKNEHH---SEFFLKSITLEGFGG---SGTITFVCNSWVYPKK 126 (137)
T ss_pred EEEEEEEeecccCCccEEEEEECCC---ceEEEEEEEEeCCCC---CccEEEEccccCccCC
Confidence 56643 446689999999975433 688999999976431 2569999999998654
No 17
>PLN02337 lipoxygenase
Probab=79.10 E-value=15 Score=34.65 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=39.9
Q ss_pred EEEee--cCCCCCCcEEEEEEecCCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714 61 VFSGR--GPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM 120 (149)
Q Consensus 61 ~F~v~--~~~~lG~i~~i~l~~d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~ 120 (149)
.|.++ .+.++|.+=.|.|...-. .--|+..|++.+... ....+|+||.|+....
T Consensus 96 ~y~~~F~~~~~fG~pGAi~V~N~h~---~EffL~sitle~~p~---~g~v~f~cnSWV~~~~ 151 (866)
T PLN02337 96 AFKVTFDWDEKIGVPGAFIIKNNHH---SEFYLKTVTLEDVPG---HGRVHFVCNSWIYPAK 151 (866)
T ss_pred EEEEEEEecccCCCcceEEEEecCC---ceEEEEEEEEecCCC---CCcEEEecCCccccCC
Confidence 56654 345689999999975443 579999999965431 2569999999998653
No 18
>PLN02264 lipoxygenase
Probab=76.53 E-value=18 Score=34.28 Aligned_cols=53 Identities=11% Similarity=0.300 Sum_probs=39.9
Q ss_pred EEEee--cCCCCCCcEEEEEEecCCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714 61 VFSGR--GPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM 120 (149)
Q Consensus 61 ~F~v~--~~~~lG~i~~i~l~~d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~ 120 (149)
.|.++ .+.++|.+-.|.|..... .--|+..|++.+.. +...+|+||.|+....
T Consensus 159 ~y~~~F~~~~~fG~pGAi~V~N~h~---~EffL~~itle~~p----~g~v~F~cnSWV~p~~ 213 (919)
T PLN02264 159 HYTAEFTVDSAFGSPGAITVTNKHQ---KEFFLESITIEGFA----CGPVHFPCNSWVQSQK 213 (919)
T ss_pred EEEEEEEeccccCCcceEEEEeCCC---ceEEEEEEEeccCC----CCcEEEecCCccccCc
Confidence 57654 345689999998875443 57999999996653 3569999999998643
No 19
>PLN02305 lipoxygenase
Probab=72.94 E-value=27 Score=33.12 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=39.7
Q ss_pred EEEee--cCCCCCCcEEEEEEecCCCCCCCeEEEEEEEEeCCCCCCCceEEEecceeeeccc
Q 042714 61 VFSGR--GPCIGSPICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVDQWLSSRM 120 (149)
Q Consensus 61 ~F~v~--~~~~lG~i~~i~l~~d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~~Wl~~d~ 120 (149)
.|.++ .+.++|.+-.|.|..... .--|+..|++.+.. +...+|.||.|+-...
T Consensus 155 ~~~~~f~~~~~fG~pGA~~v~N~h~---~ef~l~~i~l~~~p----~g~v~f~cnSWv~~~~ 209 (918)
T PLN02305 155 EYAADFTVPFDFGKPGAVLVTNLHG---KEFYLMEIVIHGFD----DGPIFFPANTWIHSRK 209 (918)
T ss_pred EEEEEEeeccccCCcceEEEEeCCC---ceEEEEEEEEecCC----CCeEEEeccCccccCC
Confidence 56654 345689999988875443 57999999997653 3579999999998543
No 20
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=24.63 E-value=97 Score=19.28 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=17.0
Q ss_pred EEEEEEecCCCCCCCeEEEEEEEEe
Q 042714 74 CNLNVSSDGSGMFPSWYCEYVEVTS 98 (149)
Q Consensus 74 ~~i~l~~d~~g~~~~W~l~~V~V~~ 98 (149)
..|+|..+..|...+||+-.|.=..
T Consensus 5 ~~VEV~s~e~g~~gaWf~a~V~~~~ 29 (68)
T PF05641_consen 5 DEVEVSSDEDGFRGAWFPATVLKEN 29 (68)
T ss_dssp -EEEEEE-SBTT--EEEEEEEEEEE
T ss_pred CEEEEEEcCCCCCcEEEEEEEEEeC
Confidence 4677888888889999999886554
No 21
>PF09671 Spore_GerQ: Spore coat protein (Spore_GerQ); InterPro: IPR014099 Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=21.66 E-value=1.1e+02 Score=20.39 Aligned_cols=56 Identities=7% Similarity=0.128 Sum_probs=32.9
Q ss_pred ccccCCccEEEeecCCCCC---CcEEEEEEecCCCCCCCeEEEEEEEEeCCCCCCCceEEEecc--eeeecc
Q 042714 53 YYERGNVDVFSGRGPCIGS---PICNLNVSSDGSGMFPSWYCEYVEVTSTGPHRSCDQSAFYVD--QWLSSR 119 (149)
Q Consensus 53 ~FerG~~d~F~v~~~~~lG---~i~~i~l~~d~~g~~~~W~l~~V~V~~~~t~~~~~~~~F~~~--~Wl~~d 119 (149)
.+.+|..-+|.++-..+-. .+-+=.| +..|. |+|.|++++| ++.|.|+.- .|+.-|
T Consensus 15 RlN~GK~~T~Y~Tyenn~ewnakvf~Gvi--E~aGR------DhiiisDp~t---g~ryLllmvylDyv~Fd 75 (81)
T PF09671_consen 15 RLNRGKLATFYMTYENNSEWNAKVFRGVI--EAAGR------DHIIISDPKT---GKRYLLLMVYLDYVTFD 75 (81)
T ss_pred HhcCCceEEEEEEecCchhhhheeeEEEe--hhcCc------ceEEEeCCCC---CcEEEEEEEeeeeEEec
Confidence 3577888888887665321 1111112 22222 5799999987 888888753 444433
Done!