BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042715
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 123/262 (46%), Gaps = 52/262 (19%)
Query: 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
+S C ++ +I LS N+LTG IP W+ LEN++ L L N +G IP E+G+ ++L L L
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 61 EHKQLTGRIPSEI----GKLK--------------------------------------- 77
G IP+ + GK+
Sbjct: 543 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 602
Query: 78 ------PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
P +S + G T N ++ +++S N+L G +PK + S L LNL
Sbjct: 603 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 662
Query: 132 EGIFSST---LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQ 188
I S +G+L L LDLS+NKL G+IPQ LT L D+S+N + GPIP+ Q
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 722
Query: 189 FNTFETSSFDGNPGLCGEPLPK 210
F TF + F NPGLCG PLP+
Sbjct: 723 FETFPPAKFLNNPGLCGYPLPR 744
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 10 IKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI 69
+ L N TG IP L N + +L L N L+G IP +G+L L L L L G I
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 70 PSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKF 126
P E+ +K + N+ G IP N NL I LS+N L G +PK
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK---------- 505
Query: 127 LNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG 186
+G L L L LSNN SG IP + G+ SL + D++ NL G IP
Sbjct: 506 -----------WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
+S C +++ + LS N L+G IP L +L + L L N L G IP E+ +K L TL L
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 61 EHKQLTGRIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS 117
+ LTG IPS + L I+ S+N G IP+ NLA+++LS+N G +P
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 118 LASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQ 158
L C L +L+L + +F+ T+ + +S ++ N ++G+
Sbjct: 531 LGDCRSLIWLDL-NTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 101/243 (41%), Gaps = 57/243 (23%)
Query: 1 ISLCFDIIYIKLSGNQLTGPIP-------YWLENLEN----------------ISTLWLE 37
IS C ++ + +S NQ GPIP +L EN ++ L L
Sbjct: 240 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 299
Query: 38 KNQLTGCIPFEIG-------------------------NLKNLSTLCLEHKQLTGRIPSE 72
N G +P G ++ L L L + +G +P
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 73 IGKLKP----IAASSNNFRGSI-PQTCKNEAN-LAMIELSSNLLEGRVPKSLASCTELKF 126
+ L + SSNNF G I P C+N N L + L +N G++P +L++C+EL
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 127 LNL---VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183
L+L G S+LG+L L L L N L G+IPQ+ + +LE + N + G I
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 184 PQG 186
P G
Sbjct: 480 PSG 482
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 10/181 (5%)
Query: 15 NQLTGPIPY-WLENLENISTLWLEKNQLTGCIPFEIGNLK-NLSTLCLEHKQLTGRIPSE 72
N +G +P L + + L L N+ +G +P + NL +L TL L +G I
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 73 I-----GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
+ L+ + +N F G IP T N + L + LS N L G +P SL S ++L+ L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 128 NL---VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
L + EG L + LE+L L N L+G+IP T+L + +S+N + G IP
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 185 Q 185
+
Sbjct: 505 K 505
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 100 LAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSST---LGNLIVLESLDLSNNKLS 156
L + +S N + G V ++ C L+FL+ VS FS+ LG+ L+ LD+S NKLS
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLD-VSSNNFSTGIPFLGDCSALQHLDISGNKLS 233
Query: 157 GQIPQQFGELTSLEFFDVSDNLVIGPIP 184
G + T L+ ++S N +GPIP
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
C ++ ++ +SGN+++G + + N+ L + N + IPF +G+ L L +
Sbjct: 174 CGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 230
Query: 64 QLTG---RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
+L+G R S +LK + SSN F G IP +L + L+ N G +P L+
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSG 288
Query: 121 CTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFG 164
+ L LDLS N G +P FG
Sbjct: 289 ACD--------------------TLTGLDLSGNHFYGAVPPFFG 312
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 123/262 (46%), Gaps = 52/262 (19%)
Query: 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
+S C ++ +I LS N+LTG IP W+ LEN++ L L N +G IP E+G+ ++L L L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 61 EHKQLTGRIPSEI----GKLK--------------------------------------- 77
G IP+ + GK+
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605
Query: 78 ------PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131
P +S + G T N ++ +++S N+L G +PK + S L LNL
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665
Query: 132 EGIFSST---LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQ 188
I S +G+L L LDLS+NKL G+IPQ LT L D+S+N + GPIP+ Q
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725
Query: 189 FNTFETSSFDGNPGLCGEPLPK 210
F TF + F NPGLCG PLP+
Sbjct: 726 FETFPPAKFLNNPGLCGYPLPR 747
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 10 IKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI 69
+ L N TG IP L N + +L L N L+G IP +G+L L L L L G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 70 PSEIGKLKPIAA---SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKF 126
P E+ +K + N+ G IP N NL I LS+N L G +PK
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK---------- 508
Query: 127 LNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG 186
+G L L L LSNN SG IP + G+ SL + D++ NL G IP
Sbjct: 509 -----------WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL 60
+S C +++ + LS N L+G IP L +L + L L N L G IP E+ +K L TL L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 61 EHKQLTGRIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS 117
+ LTG IPS + L I+ S+N G IP+ NLA+++LS+N G +P
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 118 LASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQ 158
L C L +L+L + +F+ T+ + +S ++ N ++G+
Sbjct: 534 LGDCRSLIWLDL-NTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 101/243 (41%), Gaps = 57/243 (23%)
Query: 1 ISLCFDIIYIKLSGNQLTGPIP-------YWLENLEN----------------ISTLWLE 37
IS C ++ + +S NQ GPIP +L EN ++ L L
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 38 KNQLTGCIPFEIG-------------------------NLKNLSTLCLEHKQLTGRIPSE 72
N G +P G ++ L L L + +G +P
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 73 IGKLKP----IAASSNNFRGSI-PQTCKNEAN-LAMIELSSNLLEGRVPKSLASCTELKF 126
+ L + SSNNF G I P C+N N L + L +N G++P +L++C+EL
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 127 LNL---VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183
L+L G S+LG+L L L L N L G+IPQ+ + +LE + N + G I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 184 PQG 186
P G
Sbjct: 483 PSG 485
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 10/181 (5%)
Query: 15 NQLTGPIPY-WLENLENISTLWLEKNQLTGCIPFEIGNLK-NLSTLCLEHKQLTGRIPSE 72
N +G +P L + + L L N+ +G +P + NL +L TL L +G I
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 73 I-----GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
+ L+ + +N F G IP T N + L + LS N L G +P SL S ++L+ L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 128 NL---VSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
L + EG L + LE+L L N L+G+IP T+L + +S+N + G IP
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 185 Q 185
+
Sbjct: 508 K 508
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 100 LAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSST---LGNLIVLESLDLSNNKLS 156
L + +S N + G V ++ C L+FL+ VS FS+ LG+ L+ LD+S NKLS
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLD-VSSNNFSTGIPFLGDCSALQHLDISGNKLS 236
Query: 157 GQIPQQFGELTSLEFFDVSDNLVIGPIP 184
G + T L+ ++S N +GPIP
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63
C ++ ++ +SGN+++G + + N+ L + N + IPF +G+ L L +
Sbjct: 177 CGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233
Query: 64 QLTG---RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLAS 120
+L+G R S +LK + SSN F G IP +L + L+ N G +P L+
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSG 291
Query: 121 CTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFG 164
+ L LDLS N G +P FG
Sbjct: 292 ACD--------------------TLTGLDLSGNHFYGAVPPFFG 315
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 9/208 (4%)
Query: 9 YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
Y+ ++ ++G IP +L ++ + TL N L+G +P I +L NL + + +++G
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 69 IPSEIGKLKPI----AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTEL 124
IP G + S N G IP T N NLA ++LS N+LEG S
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 125 KFLNLVSEGIFSSTLGNLIV---LESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG 181
+ ++L + + LG + + L LDL NN++ G +PQ +L L +VS N + G
Sbjct: 224 QKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 182 PIPQGKQFNTFETSSFDGNPGLCGEPLP 209
IPQG F+ S++ N LCG PLP
Sbjct: 283 EIPQGGNLQRFDVSAYANNKCLCGSPLP 310
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
++ I S NQLT P L+NL + + + NQ+ P + NL NL+ L L + Q+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 66 TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
T P KN NL +ELSSN + +L+ T L+
Sbjct: 120 TDIDP-----------------------LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 126 FLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
LN S + L NL LE LD+S+NK+S +LT+LE ++N + P
Sbjct: 155 QLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 212
Query: 185 QGKQFNTFETSSFDGN 200
G N + S +GN
Sbjct: 213 LGILTN-LDELSLNGN 227
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
++ I S NQLT P L+NL + + + NQ+ P + NL NL+ L L + Q+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 66 TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
T P KN NL +ELSSN + +L+ T L+
Sbjct: 120 TDIDP-----------------------LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 126 FLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ 185
LN ++ L NL LE LD+S+NK+S +LT+LE ++N + P
Sbjct: 155 QLNFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPL 212
Query: 186 GKQFNTFETSSFDGN 200
G N + S +GN
Sbjct: 213 GILTN-LDELSLNGN 226
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
++ I S NQLT P L+NL + + + NQ+ P + NL NL+ L L + Q+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 66 TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
T P KN NL +ELSSN + +L+ T L+
Sbjct: 120 TDIDP-----------------------LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 126 FLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ 185
LN ++ L NL LE LD+S+NK+S +LT+LE ++N + P
Sbjct: 155 QLNFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPL 212
Query: 186 GKQFNTFETSSFDGN 200
G N + S +GN
Sbjct: 213 GILTN-LDELSLNGN 226
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 86/196 (43%), Gaps = 34/196 (17%)
Query: 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
++ I S NQLT P L+NL + + + NQ+ P + NL NL+ L L + Q+
Sbjct: 68 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 123
Query: 66 TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS-LASCTEL 124
T P KN NL +ELSSN + S L S +L
Sbjct: 124 TDIDP-----------------------LKNLTNLNRLELSSNTISDISALSGLTSLQQL 160
Query: 125 KFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
F N V++ L NL LE LD+S+NK+S +LT+LE ++N + P
Sbjct: 161 SFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 215
Query: 185 QGKQFNTFETSSFDGN 200
G N + S +GN
Sbjct: 216 LGILTN-LDELSLNGN 230
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 86/196 (43%), Gaps = 34/196 (17%)
Query: 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
++ I S NQLT P L+NL + + + NQ+ P + NL NL+ L L + Q+
Sbjct: 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124
Query: 66 TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS-LASCTEL 124
T P KN NL +ELSSN + S L S +L
Sbjct: 125 TDIDP-----------------------LKNLTNLNRLELSSNTISDISALSGLTSLQQL 161
Query: 125 KFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
F N V++ L NL LE LD+S+NK+S +LT+LE ++N + P
Sbjct: 162 SFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216
Query: 185 QGKQFNTFETSSFDGN 200
G N + S +GN
Sbjct: 217 LGILTN-LDELSLNGN 231
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
++ I S NQLT P L+NL + + + NQ+ P + NL NL+ L L + Q+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 66 TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
T P KN NL +ELSSN + +L+ T L+
Sbjct: 120 TDIDP-----------------------LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 126 FLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
L+ S + L NL LE LD+S+NK+S +LT+LE ++N + P
Sbjct: 155 QLSFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 212
Query: 185 QGKQFNTFETSSFDGN 200
G N + S +GN
Sbjct: 213 LGILTN-LDELSLNGN 227
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 32/178 (17%)
Query: 7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
++ I ++ NQ+ P L NL N++ L L NQ+T P + NL NL+ L L ++
Sbjct: 87 LVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS 142
Query: 67 G-RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
S + L+ ++ SSN P N L +++SSN + LA T L+
Sbjct: 143 DISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLE 198
Query: 126 FL----NLVSE----GIFSS---------------TLGNLIVLESLDLSNNKLSGQIP 160
L N +S+ GI ++ TL +L L LDL+NN++S P
Sbjct: 199 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
++ I S NQLT P L+NL + + + NQ+ P + NL NL+ L L + Q+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 66 TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
T P KN NL +ELSSN + +L+ T L+
Sbjct: 120 TDIDP-----------------------LKNLTNLNRLELSSNTISDI--SALSGLTSLQ 154
Query: 126 FLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
L+ S + L NL LE LD+S+NK+S +LT+LE ++N + P
Sbjct: 155 QLSFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 212
Query: 185 QGKQFNTFETSSFDGN 200
G N + S +GN
Sbjct: 213 LGILTN-LDELSLNGN 227
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 32/178 (17%)
Query: 7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
++ I ++ NQ+ P L NL N++ L L NQ+T P + NL NL+ L L ++
Sbjct: 87 LVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS 142
Query: 67 G-RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
S + L+ ++ SSN P N L +++SSN + LA T L+
Sbjct: 143 DISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLE 198
Query: 126 FL----NLVSE----GIFSS---------------TLGNLIVLESLDLSNNKLSGQIP 160
L N +S+ GI ++ TL +L L LDL+NN++S P
Sbjct: 199 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 10/136 (7%)
Query: 50 GNLKNLSTLCLEHKQL-----TGRIPSEIGKLKPIAASSNNFRG-SIPQTCKNEANLAMI 103
LK L TL L+ L + + L+ + S N+ + +TC ++ ++
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 104 ELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--STLGNLIVLESLDLSNNKLSGQIPQ 161
LSSN+L G V + L ++K L+L + I S + +L L+ L++++N+L
Sbjct: 434 NLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG 491
Query: 162 QFGELTSLEFFDVSDN 177
F LTSL++ + DN
Sbjct: 492 VFDRLTSLQYIWLHDN 507
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 63/172 (36%), Gaps = 42/172 (24%)
Query: 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
++ Y+ L+GNQL + L N+ L L +NQL L NL+ L L H QL
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145
Query: 66 TGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
KL NL ++LS N L+
Sbjct: 146 QSLPKGVFDKL---------------------TNLTELDLSYNQLQS------------- 171
Query: 126 FLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177
+ EG+F L L+ L L N+L F LTSL++ + DN
Sbjct: 172 ----LPEGVFDK----LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 25 LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG---RIPSEIGKLKPIAA 81
+ L+N+ TLW+ N+L L NL+ L L+ QL R+ + KL ++
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 82 SSNNFRGSIPQTCKNE-ANLAMIELSSNLLEGRVPK-SLASCTELKFLNL-------VSE 132
N + S+P+ ++ +L + L +N L+ RVP+ + TELK L L V E
Sbjct: 141 GYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPE 198
Query: 133 GIFSS 137
G F S
Sbjct: 199 GAFDS 203
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 18/184 (9%)
Query: 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
D + L N+L+ L + L+L N+L LKNL TL + +L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 66 TGR---IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPK----SL 118
+ ++ L + N + P+ + L + L N L+ +PK L
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKL 156
Query: 119 ASCTELKFLN----LVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQ-QFGELTSLEFFD 173
S EL+ N V EG F L L++L L NN+L ++P+ F L L+
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDK----LTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQ 211
Query: 174 VSDN 177
+ +N
Sbjct: 212 LQEN 215
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 146 ESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG--KQFNTFET 194
+ LDL +NKLS + F LT L ++DN + +P G K+ ET
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLET 89
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 29/100 (29%)
Query: 90 IPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLD 149
+P KN +NL +++LS N L +P L SC +LK+ N++
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF---------FDNMVT----- 306
Query: 150 LSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQF 189
+P +FG L +L+F V N P KQF
Sbjct: 307 --------TLPWEFGNLCNLQFLGVEGN------PLEKQF 332
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 10/178 (5%)
Query: 9 YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR 68
Y+ ++ +++ P + NL ++ +L L NQ+ P + +L +L Q+T
Sbjct: 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214
Query: 69 IP-SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127
P + +L + +N P N + L +E+ +N + ++ T+LK L
Sbjct: 215 TPVANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKXL 270
Query: 128 NLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184
N+ S I S L NL L SL L+NN+L + + G LT+L +S N + P
Sbjct: 271 NVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS------EGIFSSTLGNLIVLESLDLS 151
A + ++LS N + L +C L+ L L S EG +LG+L E LDLS
Sbjct: 52 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL---EHLDLS 108
Query: 152 NNKLSGQIPQQFGELTSLEFFDVSDN 177
+N LS FG L+SL++ ++ N
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 25 LENLENISTLWLEKNQL--TGCIPFEIGNLKNLSTLCLEHKQ---LTGRIPSEIGKLKPI 79
LE LEN+ L L + + + C ++ NL++L L L + + L + E +L+ +
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 80 AASSNNFRGSIPQT-CKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL----VSEGI 134
+ + P + +N L ++ LS LL+ LA +L+ LNL +G
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464
Query: 135 FSST-----LGNLIVL---------------------ESLDLSNNKLSGQIPQQFGELTS 168
S T +G+L +L LDLS+N L+G L
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKG 524
Query: 169 LEFFDVSDNLVIGP 182
L S+N+ I P
Sbjct: 525 LYLNMASNNIRIIP 538
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS------EGIFSSTLGNLIVLESLDLS 151
A + ++LS N + L +C L+ L L S EG +LG+L E LDLS
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL---EHLDLS 82
Query: 152 NNKLSGQIPQQFGELTSLEFFDVSDN 177
+N LS FG L+SL++ ++ N
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 76/205 (37%), Gaps = 12/205 (5%)
Query: 10 IKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCL-EHKQLTGR 68
I L GN+++ ++ N++ LWL N L G L L L L ++ QL
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 69 IPSE---IGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125
P+ +G L + + P + A L + L N L+ + L
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 126 FLNLVSEGIFSSTLGNLIVLESLD---LSNNKLSGQIPQQF---GELTSLEFFDVSDNLV 179
L L I S L SLD L N ++ P F G L +L F ++NL
Sbjct: 156 HLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLF--ANNLS 213
Query: 180 IGPIPQGKQFNTFETSSFDGNPGLC 204
+ P + + + NP +C
Sbjct: 214 MLPAEVLVPLRSLQYLRLNDNPWVC 238
>pdb|3AAD|B Chain B, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
pdb|3AAD|D Chain D, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 158
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 164 GELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203
G S E+ V D++++GP+P G+ F+ + NPGL
Sbjct: 49 GSAESEEYDQVLDSVLVGPVPAGRHMFVFQADA--PNPGL 86
>pdb|1TEY|A Chain A, Nmr Structure Of Human Histone Chaperone, Asf1a
pdb|2IIJ|A Chain A, Structure Of Human Asf1a In Complex With Histone H3
Length = 158
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 164 GELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203
G S E+ V D++++GP+P G+ F+ + NPGL
Sbjct: 48 GSAESEEYDQVLDSVLVGPVPAGRHMFVFQADA--PNPGL 85
>pdb|2IO5|A Chain A, Crystal Structure Of The Cia- Histone H3-H4 Complex
Length = 175
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 164 GELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203
G S E+ V D++++GP+P G+ F+ + NPGL
Sbjct: 49 GSAESEEYDQVLDSVLVGPVPAGRHMFVFQADA--PNPGL 86
>pdb|2I32|A Chain A, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
pdb|2I32|B Chain B, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
Length = 182
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 164 GELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203
G S E+ V D++++GP+P G+ F+ + NPGL
Sbjct: 71 GSAESEEYDQVLDSVLVGPVPAGRHMFVFQADA--PNPGL 108
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65
++ Y+ L+GNQL + L N+ L L +NQL L NL+ L L H QL
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 66 TGRIPSEIGKLKPIAA--SSNNFRGSIPQTCKNE-ANLAMIELSSNLLEGRVP----KSL 118
KL + NN S+P+ ++ L + L+ N L+ VP L
Sbjct: 146 QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRL 204
Query: 119 ASCTELKFLN 128
S T + LN
Sbjct: 205 TSLTHIWLLN 214
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQ 64
D +Y L GNQL + L + L L NQL L NL TL L Q
Sbjct: 109 LDKLY--LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 65 LTGRIP----SEIGKLKPIAASSNNFRGSIPQT 93
L +P +GKL+ I N F S +T
Sbjct: 167 LQS-VPHGAFDRLGKLQTITLFGNQFDCSRCET 198
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQL 65
+ ++ L NQL ++L + TL L NQL +P + +L L L L QL
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQL 119
Query: 66 TGRIPS----EIGKLKPIAASSNNFRGSIPQTCKNE-ANLAMIELSSNLLE 111
+PS + KLK + ++N + SIP ++ NL + LS+N L+
Sbjct: 120 KS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 22/151 (14%)
Query: 42 TGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---------EIGKLKPIAASSNNFRGSIPQ 92
TGC P + ++ + LC H++ +P ++GK + + + F S P
Sbjct: 1 TGCPPRCECSAQDRAVLC--HRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEF-ASFPH 57
Query: 93 TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLG---NLIVLESLD 149
L +EL+ N++ P + + L+ L L S + LG L L LD
Sbjct: 58 -------LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110
Query: 150 LSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180
+S NK+ + F +L +L+ +V DN ++
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQ 64
D +Y L GNQL + L + L L NQL L NL TL L Q
Sbjct: 109 LDKLY--LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 65 LTGRIP----SEIGKLKPIAASSNNF 86
L +P +GKL+ I N F
Sbjct: 167 LQS-VPHGAFDRLGKLQTITLFGNQF 191
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQL 65
+ ++ L NQL ++L + TL L NQL +P + +L L L L QL
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQL 119
Query: 66 TGRIPS----EIGKLKPIAASSNNFRGSIPQTCKNE-ANLAMIELSSNLLE 111
+PS + KLK + ++N + SIP ++ NL + LS+N L+
Sbjct: 120 KS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 10 IKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT 66
+ LSGN L+ P + L ++ LW+ ++Q+ NL++L + L H LT
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 88 GSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIV 144
G P + + MI+ L++G VP SL CT L LV G S GN+++
Sbjct: 405 GKPPAIDLDGEHYKMIDGFEKLVKGGVP-SLRQCTSLTVRGLVEFGADVSVRGNVVI 460
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 101 AMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTL-GNLIVLESLDLSNNKLSGQI 159
++ LS NLL +L T L LNL + + G L VL +LDLS+N+L +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-L 92
Query: 160 PQQFGELTSLEFFDVSDN 177
P L +L DVS N
Sbjct: 93 PLLGQTLPALTVLDVSFN 110
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 101 AMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTL-GNLIVLESLDLSNNKLSGQI 159
++ LS NLL +L T L LNL + + G L VL +LDLS+N+L +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-L 92
Query: 160 PQQFGELTSLEFFDVSDN 177
P L +L DVS N
Sbjct: 93 PLLGQTLPALTVLDVSFN 110
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 101 AMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTL-GNLIVLESLDLSNNKLSGQI 159
++ LS NLL +L T L LNL + + G L VL +LDLS+N+L +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-L 92
Query: 160 PQQFGELTSLEFFDVSDN 177
P L +L DVS N
Sbjct: 93 PLLGQTLPALTVLDVSFN 110
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 101 AMIELSSNLLEGRVPKSLASCTELKFLNL-VSEGIFSSTLGNLIVLESLDLSNNKLSGQI 159
++ LS NLL +L T L LNL E G L VL +LDLS+N+L +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-L 92
Query: 160 PQQFGELTSLEFFDVSDN 177
P L +L DVS N
Sbjct: 93 PLLGQTLPALTVLDVSFN 110
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 101 AMIELSSNLLEGRVPKSLASCTELKFLNL-VSEGIFSSTLGNLIVLESLDLSNNKLSGQI 159
++ LS NLL +L T L LNL E G L VL +LDLS+N+L +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-L 92
Query: 160 PQQFGELTSLEFFDVSDN 177
P L +L DVS N
Sbjct: 93 PLLGQTLPALTVLDVSFN 110
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 101 AMIELSSNLLEGRVPKSLASCTELKFLNLVS-EGIFSSTLGNLIVLESLDLSNNKLSGQI 159
++ LS NLL +L T L LNL E G L VL +LDLS+N+L +
Sbjct: 35 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-L 93
Query: 160 PQQFGELTSLEFFDVSDN 177
P L +L DVS N
Sbjct: 94 PLLGQTLPALTVLDVSFN 111
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 101 AMIELSSNLLEGRVPKSLASCTELKFLNLVS-EGIFSSTLGNLIVLESLDLSNNKLSGQI 159
++ LS NLL +L T L LNL E G L VL +LDLS+N+L +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-L 92
Query: 160 PQQFGELTSLEFFDVSDN 177
P L +L DVS N
Sbjct: 93 PLLGQTLPALTVLDVSFN 110
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 101 AMIELSSNLLEGRVPKSLASCTELKFLNLVS-EGIFSSTLGNLIVLESLDLSNNKLSGQI 159
++ LS NLL +L T L LNL E G L VL +LDLS+N+L +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-L 92
Query: 160 PQQFGELTSLEFFDVSDN 177
P L +L DVS N
Sbjct: 93 PLLGQTLPALTVLDVSFN 110
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 23 YWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI----GKLKP 78
Y I L++ N + P N+ L+ L LE L+ +P I KL
Sbjct: 87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTT 145
Query: 79 IAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSST 138
++ S+NN T + +L ++LSSN L V SL F VS + ST
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSL---FHANVSYNLL-ST 200
Query: 139 LGNLIVLESLDLSNNKLS 156
L I +E LD S+N ++
Sbjct: 201 LAIPIAVEELDASHNSIN 218
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 101 AMIELSSNLLEGRVPKSLASCTELKFLNLVS-EGIFSSTLGNLIVLESLDLSNNKLSGQI 159
++ LS NLL +L T L LNL E G L VL +LDLS+N+L +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-L 92
Query: 160 PQQFGELTSLEFFDVSDN 177
P L +L DVS N
Sbjct: 93 PLLGQTLPALTVLDVSFN 110
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 114 VPKSLASCTELKFL--NLVSE---GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTS 168
VP + + T++ +L N +++ G+F L L LDL NN+L+ F +LT
Sbjct: 24 VPTGIPTTTQVLYLYDNRITKLEPGVFD----RLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 169 LEFFDVSDNLVIGPIPQG 186
L ++DN + IP+G
Sbjct: 80 LTQLSLNDN-QLKSIPRG 96
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 87 RGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLE 146
R + TCK +AN E L G +PK + E + L +G + +L + E
Sbjct: 233 RMDVKLTCKADANPPATEYHWTTLNGSLPKGV----EAQNRTLFFKGPINYSLAGTYICE 288
Query: 147 SLDLSNNKLSGQIPQQFGELTSLE 170
+ + + SGQ+ E +LE
Sbjct: 289 ATNPIGTR-SGQVEVNITEAAALE 311
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 101 AMIELSSNLLEGRVPKSLASCTELKFLNLVS-EGIFSSTLGNLIVLESLDLSNNKLSGQI 159
++ LS NLL +L T L LNL E G L VL +LDLS+N+L +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS-L 92
Query: 160 PQQFGELTSLEFFDVSDN 177
P L +L DVS N
Sbjct: 93 PLLGQTLPALTVLDVSFN 110
>pdb|1IQD|B Chain B, Human Factor Viii C2 Domain Complexed To Human Monoclonal
Bo2c11 Fab
Length = 215
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 63 KQLTGRIPSEIGKLKPIAASS---NNFRGSIPQTCKNEANLAMIELSS 107
+Q G+ +G P + S F+GS+ T N+A +ELSS
Sbjct: 38 RQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSS 85
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 87 RGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLE 146
R + TCK +AN E L G +PK + E + L +G + +L + E
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLNGSLPKGV----EAQNRTLFFKGPINYSLAGTYICE 302
Query: 147 SLDLSNNKLSGQIPQQFGELTSLE 170
+ + + SGQ+ E +LE
Sbjct: 303 ATNPIGTR-SGQVEVNITEAAALE 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,041,814
Number of Sequences: 62578
Number of extensions: 224181
Number of successful extensions: 789
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 178
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)