Query 042715
Match_columns 212
No_of_seqs 151 out of 2363
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 08:45:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.7E-25 5.8E-30 192.7 13.3 205 3-207 402-611 (968)
2 PLN00113 leucine-rich repeat r 99.9 3E-24 6.6E-29 186.1 12.1 199 4-202 139-344 (968)
3 KOG4194 Membrane glycoprotein 99.9 8.5E-24 1.8E-28 165.5 0.4 207 1-208 217-457 (873)
4 KOG4194 Membrane glycoprotein 99.9 9.1E-23 2E-27 159.7 1.4 207 1-207 193-433 (873)
5 KOG0617 Ras suppressor protein 99.8 8.9E-22 1.9E-26 132.5 -3.9 174 27-204 31-213 (264)
6 KOG4237 Extracellular matrix p 99.8 6.9E-21 1.5E-25 142.8 -3.7 204 5-209 67-365 (498)
7 KOG0444 Cytoskeletal regulator 99.8 2.9E-20 6.2E-25 147.5 -1.8 196 3-202 76-280 (1255)
8 KOG0444 Cytoskeletal regulator 99.7 1.1E-19 2.3E-24 144.3 -2.8 195 3-201 101-327 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 2.6E-19 5.6E-24 135.0 -3.5 197 3-203 250-541 (565)
10 PLN03210 Resistant to P. syrin 99.7 3.8E-16 8.2E-21 137.3 15.2 199 3-204 655-907 (1153)
11 KOG0617 Ras suppressor protein 99.7 2.7E-19 5.9E-24 120.6 -3.4 155 49-207 29-190 (264)
12 KOG0472 Leucine-rich repeat pr 99.7 6.7E-20 1.5E-24 138.1 -7.1 191 5-203 91-310 (565)
13 KOG0618 Serine/threonine phosp 99.7 1.4E-18 3.1E-23 142.4 -4.0 194 5-202 241-488 (1081)
14 PLN03210 Resistant to P. syrin 99.6 2.3E-15 4.9E-20 132.4 13.0 194 4-203 610-838 (1153)
15 PRK15387 E3 ubiquitin-protein 99.6 1.9E-15 4.2E-20 125.8 9.4 78 123-205 383-460 (788)
16 PRK15370 E3 ubiquitin-protein 99.6 2.5E-15 5.4E-20 125.5 9.3 183 5-203 199-401 (754)
17 PRK15370 E3 ubiquitin-protein 99.6 1.2E-15 2.7E-20 127.3 6.3 185 5-203 220-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.6 7.1E-17 1.5E-21 123.9 -1.8 38 143-180 250-291 (319)
19 cd00116 LRR_RI Leucine-rich re 99.6 4.9E-17 1.1E-21 124.8 -3.6 200 4-203 50-291 (319)
20 KOG4237 Extracellular matrix p 99.6 6.4E-17 1.4E-21 121.8 -3.3 179 1-180 87-359 (498)
21 PRK15387 E3 ubiquitin-protein 99.5 1.8E-14 3.8E-19 120.2 8.8 121 54-185 343-463 (788)
22 KOG0618 Serine/threonine phosp 99.5 4.6E-16 1E-20 127.9 -5.7 194 5-204 219-466 (1081)
23 COG4886 Leucine-rich repeat (L 99.4 2.6E-13 5.6E-18 107.3 4.5 176 4-186 115-296 (394)
24 KOG0532 Leucine-rich repeat (L 99.4 8.5E-15 1.8E-19 115.1 -4.8 172 5-183 75-250 (722)
25 KOG3207 Beta-tubulin folding c 99.3 6.4E-14 1.4E-18 107.0 -2.8 202 3-204 119-340 (505)
26 PLN03150 hypothetical protein; 99.3 5.2E-12 1.1E-16 104.8 6.7 109 99-207 419-532 (623)
27 KOG0532 Leucine-rich repeat (L 99.3 8.8E-14 1.9E-18 109.5 -4.6 171 27-204 73-248 (722)
28 COG4886 Leucine-rich repeat (L 99.2 1.4E-11 2.9E-16 97.5 5.5 190 9-204 97-291 (394)
29 PF13855 LRR_8: Leucine rich r 99.2 2E-11 4.4E-16 70.2 4.6 61 5-65 1-61 (61)
30 KOG3207 Beta-tubulin folding c 99.2 3.3E-12 7.2E-17 97.8 -0.4 179 3-182 144-341 (505)
31 PF14580 LRR_9: Leucine-rich r 99.1 6E-11 1.3E-15 82.4 4.7 103 4-111 18-126 (175)
32 PF14580 LRR_9: Leucine-rich r 99.1 2.6E-11 5.6E-16 84.2 2.6 104 75-182 20-128 (175)
33 KOG1259 Nischarin, modulator o 99.1 5E-12 1.1E-16 93.0 -1.2 129 53-185 284-417 (490)
34 KOG1909 Ran GTPase-activating 99.1 3.5E-12 7.5E-17 95.1 -3.0 177 3-179 28-253 (382)
35 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.3E-16 91.3 -0.6 128 29-161 284-416 (490)
36 PLN03150 hypothetical protein; 99.0 6E-10 1.3E-14 92.7 6.8 103 31-133 420-526 (623)
37 KOG1859 Leucine-rich repeat pr 99.0 9.1E-12 2E-16 101.1 -5.8 125 76-206 166-295 (1096)
38 PF13855 LRR_8: Leucine rich r 99.0 1.4E-09 3.1E-14 62.5 4.6 57 123-179 2-61 (61)
39 KOG1909 Ran GTPase-activating 98.9 5.5E-11 1.2E-15 88.8 -3.7 179 24-202 87-310 (382)
40 KOG0531 Protein phosphatase 1, 98.8 4E-10 8.6E-15 89.7 -1.1 124 6-134 73-198 (414)
41 KOG0531 Protein phosphatase 1, 98.8 5.9E-10 1.3E-14 88.7 -0.6 172 2-180 92-268 (414)
42 KOG2982 Uncharacterized conser 98.7 3.4E-09 7.3E-14 78.1 -0.2 59 122-180 199-262 (418)
43 KOG2120 SCF ubiquitin ligase, 98.7 1.4E-10 3E-15 85.3 -7.4 171 6-178 186-374 (419)
44 KOG2982 Uncharacterized conser 98.7 9.2E-10 2E-14 81.0 -3.2 177 27-203 69-262 (418)
45 KOG4658 Apoptotic ATPase [Sign 98.6 1.2E-08 2.6E-13 87.4 1.3 176 3-180 543-730 (889)
46 KOG4658 Apoptotic ATPase [Sign 98.5 8.7E-08 1.9E-12 82.2 2.8 82 1-83 567-651 (889)
47 PF12799 LRR_4: Leucine Rich r 98.4 2.1E-07 4.6E-12 49.3 1.9 38 143-181 1-38 (44)
48 PF12799 LRR_4: Leucine Rich r 98.3 4.7E-07 1E-11 48.0 2.3 37 5-42 1-37 (44)
49 KOG4579 Leucine-rich repeat (L 98.2 7.1E-08 1.5E-12 63.4 -2.6 111 95-207 50-163 (177)
50 KOG1644 U2-associated snRNP A' 98.2 3.5E-06 7.6E-11 59.1 5.0 79 123-201 43-124 (233)
51 KOG1859 Leucine-rich repeat pr 98.2 1.7E-08 3.7E-13 82.6 -7.3 122 7-134 166-291 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.2 2.5E-07 5.5E-12 67.6 -0.9 176 4-180 29-255 (388)
53 KOG1644 U2-associated snRNP A' 98.1 1E-05 2.2E-10 56.8 5.3 121 31-152 21-149 (233)
54 PRK15386 type III secretion pr 97.9 2.3E-05 5E-10 61.5 6.0 15 4-18 51-65 (426)
55 KOG4579 Leucine-rich repeat (L 97.9 1.3E-07 2.9E-12 62.1 -5.4 106 78-185 57-164 (177)
56 KOG2120 SCF ubiquitin ligase, 97.9 7.5E-08 1.6E-12 71.2 -7.5 178 2-179 207-399 (419)
57 PRK15386 type III secretion pr 97.9 0.00011 2.5E-09 57.7 8.8 135 25-177 48-187 (426)
58 KOG3665 ZYG-1-like serine/thre 97.8 2.8E-06 6E-11 71.5 -1.2 14 166-179 249-262 (699)
59 COG5238 RNA1 Ran GTPase-activa 97.8 4.6E-06 1E-10 61.2 -0.0 179 24-202 87-315 (388)
60 PF13306 LRR_5: Leucine rich r 97.7 0.00019 4.1E-09 47.5 7.2 118 2-145 9-128 (129)
61 KOG3665 ZYG-1-like serine/thre 97.7 1.6E-05 3.4E-10 67.0 1.2 146 29-176 122-284 (699)
62 PF13306 LRR_5: Leucine rich r 97.4 0.0015 3.3E-08 43.1 7.8 121 23-169 6-128 (129)
63 KOG2123 Uncharacterized conser 97.2 6.2E-06 1.4E-10 60.8 -5.5 84 97-182 18-103 (388)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00041 8.8E-09 50.7 2.7 86 94-181 39-130 (260)
65 KOG2739 Leucine-rich acidic nu 97.0 0.00023 4.9E-09 52.0 0.8 60 96-155 63-128 (260)
66 KOG2123 Uncharacterized conser 96.6 7.4E-05 1.6E-09 55.3 -4.6 97 73-173 18-123 (388)
67 PF00560 LRR_1: Leucine Rich R 96.4 0.0026 5.6E-08 28.0 1.6 19 145-164 2-20 (22)
68 PF00560 LRR_1: Leucine Rich R 96.3 0.002 4.3E-08 28.4 1.1 12 31-42 2-13 (22)
69 KOG3864 Uncharacterized conser 94.4 0.0073 1.6E-07 42.8 -0.8 81 98-178 101-187 (221)
70 PF13504 LRR_7: Leucine rich r 94.2 0.029 6.3E-07 22.9 1.0 11 169-179 3-13 (17)
71 smart00369 LRR_TYP Leucine-ric 92.7 0.073 1.6E-06 24.2 1.2 13 30-42 3-15 (26)
72 smart00370 LRR Leucine-rich re 92.7 0.073 1.6E-06 24.2 1.2 13 30-42 3-15 (26)
73 PF13516 LRR_6: Leucine Rich r 91.7 0.037 8E-07 24.7 -0.5 15 143-157 2-16 (24)
74 KOG1947 Leucine rich repeat pr 91.1 0.0062 1.3E-07 49.5 -5.9 166 4-169 187-389 (482)
75 KOG4308 LRR-containing protein 89.9 0.0007 1.5E-08 54.9 -12.0 14 167-180 262-275 (478)
76 KOG4308 LRR-containing protein 89.6 0.00075 1.6E-08 54.7 -12.1 175 7-181 89-304 (478)
77 KOG3763 mRNA export factor TAP 89.2 0.18 4E-06 41.2 1.1 61 141-202 216-282 (585)
78 KOG0473 Leucine-rich repeat pr 89.0 0.0093 2E-07 43.4 -5.5 85 93-179 37-123 (326)
79 KOG0473 Leucine-rich repeat pr 85.1 0.027 5.9E-07 41.1 -5.0 81 120-201 40-122 (326)
80 KOG3864 Uncharacterized conser 81.3 0.12 2.5E-06 36.9 -3.0 34 98-131 151-185 (221)
81 smart00365 LRR_SD22 Leucine-ri 81.1 1.1 2.4E-05 20.5 1.2 14 167-180 2-15 (26)
82 KOG1947 Leucine rich repeat pr 80.5 0.22 4.7E-06 40.5 -2.2 38 142-179 268-307 (482)
83 smart00368 LRR_RI Leucine rich 80.2 1.1 2.5E-05 20.7 1.1 14 167-180 2-15 (28)
84 smart00364 LRR_BAC Leucine-ric 76.9 1.7 3.7E-05 19.9 1.1 17 144-161 3-19 (26)
85 KOG4341 F-box protein containi 70.7 1.3 2.8E-05 35.4 -0.2 152 28-179 267-438 (483)
86 KOG4341 F-box protein containi 70.2 1.4 3E-05 35.2 -0.1 154 51-204 266-440 (483)
87 smart00367 LRR_CC Leucine-rich 66.4 4 8.7E-05 18.3 1.1 11 29-39 2-12 (26)
88 KOG3763 mRNA export factor TAP 65.9 3 6.4E-05 34.6 1.0 59 121-181 217-284 (585)
89 TIGR00864 PCC polycystin catio 51.6 9.4 0.0002 38.1 1.8 30 150-179 2-31 (2740)
90 TIGR00864 PCC polycystin catio 39.5 17 0.00037 36.5 1.5 32 11-42 1-32 (2740)
91 TIGR02167 Liste_lipo_26 bacter 27.4 25 0.00055 15.9 0.3 12 2-13 3-14 (26)
92 smart00446 LRRcap occurring C- 25.3 29 0.00063 15.9 0.3 14 25-38 9-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=2.7e-25 Score=192.65 Aligned_cols=205 Identities=30% Similarity=0.533 Sum_probs=149.7
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc--cCCceEE
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI--GKLKPIA 80 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~l~ 80 (212)
.+++|+.|++++|.+.+..|..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+ .+|+.|+
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ 481 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD 481 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEE
Confidence 34555555555555555555555555556666666655555555555556666666666666654444432 3567777
Q ss_pred cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeee
Q 042715 81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSG 157 (212)
Q Consensus 81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~ 157 (212)
+++|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+. +..+..+++|+.|++++|++.+
T Consensus 482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred CcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 7777777777777777888888888888888788888888888888888888763 4667788888889999888888
Q ss_pred ecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCC
Q 042715 158 QIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 207 (212)
.+|..+..+++|++|++++|.+.+.+|....+..+....+.+||..|+.+
T Consensus 562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 88888888888999999999888888887777777788888999888754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=3e-24 Score=186.10 Aligned_cols=199 Identities=33% Similarity=0.445 Sum_probs=104.6
Q ss_pred ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCceEE
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIA 80 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~ 80 (212)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+ .+|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 3445555555555544555555556666666666665555555555556666666666655554444332 3345555
Q ss_pred cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCcccccEEEccCCeeee
Q 042715 81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSG 157 (212)
Q Consensus 81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i~~ 157 (212)
+++|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+ .+..+..+++|++|++++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 555555555555555555555555555555545555555555555555555543 22334445555555555555554
Q ss_pred ecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCC
Q 042715 158 QIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPG 202 (212)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~ 202 (212)
.+|..+..+++|++|++++|.+.+.+|.. ..+++++.+++.+|..
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 45555555555555555555554443332 2444445555544443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=8.5e-24 Score=165.46 Aligned_cols=207 Identities=20% Similarity=0.231 Sum_probs=129.4
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCc
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLK 77 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~ 77 (212)
|.++++|+.|++..|.|....--.|.++++|+.|.+..|.|.....++|-.+.++++|++..|++...--. ++.+|+
T Consensus 217 Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~ 296 (873)
T KOG4194|consen 217 FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLE 296 (873)
T ss_pred hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhh
Confidence 34577788888888877733344677777777777777777766666777777777777777777633322 334556
Q ss_pred eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---------------------
Q 042715 78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--------------------- 136 (212)
Q Consensus 78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--------------------- 136 (212)
.|++++|.+....+..|...++|++|++++|.++...+..+..+..|+.|++++|.+..
T Consensus 297 ~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 297 QLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 67777777776666667667777777777777765555555555666666666654321
Q ss_pred ---------cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-ccccccccccccCCCccCC
Q 042715 137 ---------STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-QFNTFETSSFDGNPGLCGE 206 (212)
Q Consensus 137 ---------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~l~~l~l~~n~~~~~~ 206 (212)
..|.+++.|+.|.+.+|++..+...+|.+++.|++|||.+|.+.+.=+... .+ .+++|.+..-.++|+|
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 334455555566666666554444556666666666666666554333322 33 5666666666666666
Q ss_pred CC
Q 042715 207 PL 208 (212)
Q Consensus 207 ~~ 208 (212)
.+
T Consensus 456 ql 457 (873)
T KOG4194|consen 456 QL 457 (873)
T ss_pred cH
Confidence 54
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=9.1e-23 Score=159.75 Aligned_cols=207 Identities=20% Similarity=0.199 Sum_probs=164.2
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccccee---cCCccccCCc
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG---RIPSEIGKLK 77 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~l~ 77 (212)
|.++.+|.+|.++.|.++...+..|..+++|+.|++..|.|.-...-.|..+++|+.|.+..|.+.. -..-++.+++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 5678899999999999997777789999999999999999986667789999999999999998872 2233567889
Q ss_pred eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCC-------------
Q 042715 78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGN------------- 141 (212)
Q Consensus 78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~------------- 141 (212)
+|++..|+++..-..++.+++.|+.|++++|.++...++.|..++.|+.|++++|++.. ..|..
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 99999999986666777889999999999999998888999999999999999997743 22322
Q ss_pred -----------cccccEEEccCCeeeee---cChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCC
Q 042715 142 -----------LIVLESLDLSNNKLSGQ---IPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGE 206 (212)
Q Consensus 142 -----------~~~L~~L~l~~n~i~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~ 206 (212)
+.+|+.|||..|.++.. -..+|.++++|+.|++.+|++...... ...++.+++|++.+|+...-.
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq 432 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ 432 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec
Confidence 34566666666665432 234667788888888888888644433 237888888899888876544
Q ss_pred C
Q 042715 207 P 207 (212)
Q Consensus 207 ~ 207 (212)
+
T Consensus 433 ~ 433 (873)
T KOG4194|consen 433 P 433 (873)
T ss_pred c
Confidence 3
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.80 E-value=8.9e-22 Score=132.54 Aligned_cols=174 Identities=28% Similarity=0.441 Sum_probs=138.4
Q ss_pred ccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCceEEcccceeeeeCCCcccCCCcccEE
Q 042715 27 NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIAASSNNFRGSIPQTCKNEANLAMI 103 (212)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L 103 (212)
.+.+++.|.+++|+++ ..|..++.+.+|+.|++.+|.++ ..|.++ ++|+.|++.-|++. .+|..|+.++.|..|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 5677788888888888 45556778888888888888887 666544 45566777766665 778889999999999
Q ss_pred EccCCccc-ccCCcccccCCcccEEEccCCCC--CCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee
Q 042715 104 ELSSNLLE-GRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 104 ~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 180 (212)
++.+|.+. ...|..|..+..|+-|.+++|.+ .+..++.+++|+.|.+.+|.+. ..|.+++.+..|+.|.+++|.+.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 99998875 35788888889999999999976 6788899999999999999887 78999999999999999999998
Q ss_pred cCCCCCccc---ccccccccccCCCcc
Q 042715 181 GPIPQGKQF---NTFETSSFDGNPGLC 204 (212)
Q Consensus 181 ~~~~~~~~~---~~l~~l~l~~n~~~~ 204 (212)
..+|..+.+ .+-..+.+.+|||..
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 777776533 233556888899864
No 6
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=6.9e-21 Score=142.84 Aligned_cols=204 Identities=23% Similarity=0.282 Sum_probs=141.8
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccc-ccceecCCc----cccC----
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEH-KQLTGRIPS----EIGK---- 75 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~----~l~~---- 75 (212)
+..+.+.+..|+|+...+++|..+++|++||+++|.|+.+.|++|.+++.+..|-+.+ |+|+ .+|+ +++.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 3456788999999977778999999999999999999999999999999988876555 7776 4442 2222
Q ss_pred --------------------CceEEcccceeeeeCCCcccCCCcccEEEccCCccc--------------------c---
Q 042715 76 --------------------LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE--------------------G--- 112 (212)
Q Consensus 76 --------------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~--- 112 (212)
+..|.+-+|.+.......+..+..++++++..|.+- +
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 233333444443222234445555555555444310 0
Q ss_pred ------------------------c---------------CCcccccCCcccEEEccCCCCC---CcccCCcccccEEEc
Q 042715 113 ------------------------R---------------VPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDL 150 (212)
Q Consensus 113 ------------------------~---------------~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l 150 (212)
. ....|..+++|+.+++++|++. +.+|.+...+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 0 0013455667777777777663 366777777777777
Q ss_pred cCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCCCC
Q 042715 151 SNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEPLP 209 (212)
Q Consensus 151 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~~ 209 (212)
..|++...-...|.++..|+.|+|.+|+|+..-|- +.....+.++++.+|||.|+|.++
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 77777655566788889999999999999865554 347788999999999999999864
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=2.9e-20 Score=147.46 Aligned_cols=196 Identities=24% Similarity=0.294 Sum_probs=114.3
Q ss_pred CceeecEEEccCCccc-cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc-cC---Cc
Q 042715 3 LCFDIIYIKLSGNQLT-GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI-GK---LK 77 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~---l~ 77 (212)
.++.|+.+++.+|++. .-+|+.+..+..|+.||+++|++. ..|..+...+++-+|++++|.|. .+|..+ .+ |-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHh
Confidence 3455555555555544 224444555666666666666666 45556666666666666666665 444332 22 34
Q ss_pred eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC----CCcccCCcccccEEEccCC
Q 042715 78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI----FSSTLGNLIVLESLDLSNN 153 (212)
Q Consensus 78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~----~~~~~~~~~~L~~L~l~~n 153 (212)
.|++++|++. .+|+.++.+..|++|.+++|.+....-..+..+.+|..|++++.+. +|.++..+.+|..+|++.|
T Consensus 154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 4556666655 4555555556666666666655433333444455555566655433 3455666677777777777
Q ss_pred eeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCC
Q 042715 154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPG 202 (212)
Q Consensus 154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~ 202 (212)
.+. .+|+.+..+++|++|+|++|+++..--....-.+++.|+++.|..
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence 776 677777777777777777777764333333444566666666653
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=1.1e-19 Score=144.26 Aligned_cols=195 Identities=29% Similarity=0.319 Sum_probs=147.8
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccCCceE
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGKLKPI 79 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~l 79 (212)
+++.|+.||+++|++. ..|..+...+++-+|++++|.|..++-..|.++..|-+|++++|++. .+|+. +..|++|
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 5788999999999998 88888888899999999999999655566778899999999999987 66653 4556777
Q ss_pred Ecccceeee-------------------------eCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC
Q 042715 80 AASSNNFRG-------------------------SIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI 134 (212)
Q Consensus 80 ~l~~n~~~~-------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 134 (212)
.+++|++.. .+|..+..+.+|..++++.|.+. ..|+.+..+++|+.|++++|.+
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence 777775432 34555666667777777777766 6677777777788888888877
Q ss_pred CC--cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee--cCCCCCcccccccccccccCC
Q 042715 135 FS--STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI--GPIPQGKQFNTFETSSFDGNP 201 (212)
Q Consensus 135 ~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~l~~l~l~~n~ 201 (212)
+. ...+...+|++|+++.|+++ ..|.++.+++.|+.|.+.+|+++ |.+.-..++.+++.+...+|-
T Consensus 258 teL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 258 TELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred eeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 55 33345667788888888887 78888888888888888888775 333334477888888887775
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=2.6e-19 Score=134.97 Aligned_cols=197 Identities=25% Similarity=0.364 Sum_probs=131.7
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccccee---------------
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG--------------- 67 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------- 67 (212)
++.++..||+.+|.+. ..|+....+.+|.+||+++|.|+ ..|..++++ .|+.|-+.+|.+..
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 4666777777777777 66776777777777777777777 566677777 77777777775420
Q ss_pred ---c--------------------CCccccC------C--------------------------ceEEcccceee-----
Q 042715 68 ---R--------------------IPSEIGK------L--------------------------KPIAASSNNFR----- 87 (212)
Q Consensus 68 ---~--------------------~~~~l~~------l--------------------------~~l~l~~n~~~----- 87 (212)
. .+..++. . ..++++.|++.
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~ 406 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR 406 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh
Confidence 0 0000000 0 11223333221
Q ss_pred ------------------eeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCcccccE
Q 042715 88 ------------------GSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLES 147 (212)
Q Consensus 88 ------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~ 147 (212)
+.+|..+..++++..|++++|.+. ..|..++.+..|+.++++.|++ .|........++.
T Consensus 407 L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 407 LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLET 485 (565)
T ss_pred hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHH
Confidence 112333444667777777777666 6677777777778888887765 3344445555666
Q ss_pred EEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715 148 LDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203 (212)
Q Consensus 148 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~ 203 (212)
+-.++|++....++.+..+.+|.+||+.+|.+...+|-...+.+++++.+.|||+.
T Consensus 486 llas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 66666777755556688889999999999999988888889999999999999987
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.70 E-value=3.8e-16 Score=137.26 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=105.8
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcc
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAAS 82 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~ 82 (212)
.+++|++|++++|.....+|..+..+++|+.|++++|......|..+ .+++|+.|++++|.....+|....++++|++.
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~ 733 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLD 733 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecC
Confidence 34555555555544333455555555666666665543222333332 45555555555543332333333344444444
Q ss_pred cceeeeeCCCcc------------------------------cCCCcccEEEccCCcccccCCcccccCCcccEEEccCC
Q 042715 83 SNNFRGSIPQTC------------------------------KNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSE 132 (212)
Q Consensus 83 ~n~~~~~~~~~~------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 132 (212)
+|.+. .+|..+ ...++|+.|++++|.....+|..++.+++|+.|++++|
T Consensus 734 ~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 734 ETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred CCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 44432 111110 01124555555555444445555566666666666554
Q ss_pred C-----------------------CCCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCC-eeecCCCCCcc
Q 042715 133 G-----------------------IFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN-LVIGPIPQGKQ 188 (212)
Q Consensus 133 ~-----------------------~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~ 188 (212)
. ..........+|+.|++++|.+. .+|..+..+++|+.|++++| .+...++....
T Consensus 813 ~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 813 INLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred CCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccc
Confidence 3 22111112345677777777776 67888888888899988885 44444444446
Q ss_pred cccccccccccCCCcc
Q 042715 189 FNTFETSSFDGNPGLC 204 (212)
Q Consensus 189 ~~~l~~l~l~~n~~~~ 204 (212)
+++++.+.+.+|+.+-
T Consensus 892 L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 892 LKHLETVDFSDCGALT 907 (1153)
T ss_pred ccCCCeeecCCCcccc
Confidence 7778888887776543
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=2.7e-19 Score=120.62 Aligned_cols=155 Identities=23% Similarity=0.407 Sum_probs=135.2
Q ss_pred CCCCCCccEEEcccccceecCCccc---cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCccc
Q 042715 49 IGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK 125 (212)
Q Consensus 49 ~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 125 (212)
+..+..+..|.+++|.++ .+|+.+ .+|+.|++++|.+. .+|..+..+++|+.|.+..|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446778888999999998 666654 56788999999998 78889999999999999999998 8899999999999
Q ss_pred EEEccCCCC----CCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCC
Q 042715 126 FLNLVSEGI----FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNP 201 (212)
Q Consensus 126 ~L~l~~n~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~ 201 (212)
.|++.+|.. .+..|..+..|+-|++++|.+. .+|..++++.+|+.|.+++|.+...+.....+.+++++++.||.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 999999976 4466667889999999999997 88999999999999999999998776667799999999999998
Q ss_pred CccCCC
Q 042715 202 GLCGEP 207 (212)
Q Consensus 202 ~~~~~~ 207 (212)
..--+|
T Consensus 185 l~vlpp 190 (264)
T KOG0617|consen 185 LTVLPP 190 (264)
T ss_pred eeecCh
Confidence 765544
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=6.7e-20 Score=138.08 Aligned_cols=191 Identities=26% Similarity=0.376 Sum_probs=132.5
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc-----------
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI----------- 73 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----------- 73 (212)
..+..++.++|.+. .+|+....+..++.++++.|.+. ..++.+..+..+..++.++|.+. ..|+++
T Consensus 91 ~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 91 EALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDL 167 (565)
T ss_pred HHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhc
Confidence 34445555555555 55555555555555555555554 34444555555555555555554 333322
Q ss_pred ---------------cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--C
Q 042715 74 ---------------GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--S 136 (212)
Q Consensus 74 ---------------~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~ 136 (212)
..|++++...|-+. .+|+.++.+.+|.-|++.+|++. ..| .|.+|..|.+++++.|.+. +
T Consensus 168 ~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lp 244 (565)
T KOG0472|consen 168 EGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLP 244 (565)
T ss_pred cccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhH
Confidence 22344554444444 67778888888888888888888 666 5777888888888888763 3
Q ss_pred -cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715 137 -STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203 (212)
Q Consensus 137 -~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~ 203 (212)
....+++++..||+.+|++. ..|+.+..+.+|.+||+++|.+++.++....+ +++.+.+.|||..
T Consensus 245 ae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 33347888999999999998 89999999999999999999999888887787 9999999999963
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=1.4e-18 Score=142.37 Aligned_cols=194 Identities=26% Similarity=0.380 Sum_probs=142.8
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeee----------------------cCCCCCCCCCCccEEEccc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTG----------------------CIPFEIGNLKNLSTLCLEH 62 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----------------------~~~~~~~~l~~L~~L~l~~ 62 (212)
.++++++++++.+. .+|+++..+.+|+.+...+|.+.. ..|.....+..|++|++..
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 35566666666655 444555556556555555554321 3445556678888888888
Q ss_pred ccceecCCc-----------------------------cccCCceEEcccceeeeeCCCcccCCCcccEEEccCCccccc
Q 042715 63 KQLTGRIPS-----------------------------EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGR 113 (212)
Q Consensus 63 ~~~~~~~~~-----------------------------~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 113 (212)
|.+. ..|. ..+.|+.|++.+|.++....+.+.....|+.|++++|.+...
T Consensus 320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred cccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 8775 3321 112346778888888877777777888999999999999855
Q ss_pred CCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCC-CCCcccc
Q 042715 114 VPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI-PQGKQFN 190 (212)
Q Consensus 114 ~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~ 190 (212)
....+.++..|++|++++|++. +..+..+..|+.|...+|++. .+| .+..++.|+.+|++.|.+.... +....-+
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p 476 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP 476 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence 5566788899999999999874 577788999999999999998 778 6899999999999999997543 3333338
Q ss_pred cccccccccCCC
Q 042715 191 TFETSSFDGNPG 202 (212)
Q Consensus 191 ~l~~l~l~~n~~ 202 (212)
+|+.|+++||++
T Consensus 477 ~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 477 NLKYLDLSGNTR 488 (1081)
T ss_pred ccceeeccCCcc
Confidence 999999999996
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=2.3e-15 Score=132.41 Aligned_cols=194 Identities=21% Similarity=0.255 Sum_probs=114.8
Q ss_pred ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCceEE
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIA 80 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~ 80 (212)
+.+|+.|++.++.+. .++..+..+++|++++++++......| .+..+++|+.|++.+|.....+|..+ .+|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 356777777777666 555556667777777776654332344 35566677777776664443455433 4456666
Q ss_pred cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC------------------------
Q 042715 81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS------------------------ 136 (212)
Q Consensus 81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~------------------------ 136 (212)
+++|.....+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.+..
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence 66654433444433 3455566666555333233321 1234444444443211
Q ss_pred --------cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715 137 --------STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203 (212)
Q Consensus 137 --------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~ 203 (212)
.....+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|....+++++.+++++|...
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence 1111235678888888865557788888888888888888865556666667778888888877554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=1.9e-15 Score=125.81 Aligned_cols=78 Identities=22% Similarity=0.142 Sum_probs=44.6
Q ss_pred cccEEEccCCCCCCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCC
Q 042715 123 ELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPG 202 (212)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~ 202 (212)
+|+.|++++|.+.... ....+|+.|++++|++. .+|.. ..+|+.|++++|++...+.....++.+..+++.+|++
T Consensus 383 ~L~~LdLs~N~Lt~LP-~l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 383 GLKELIVSGNRLTSLP-VLPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ccceEEecCCcccCCC-CcccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence 3444555555443211 11234566666666665 34432 2346667777777764443445778888899999987
Q ss_pred ccC
Q 042715 203 LCG 205 (212)
Q Consensus 203 ~~~ 205 (212)
...
T Consensus 458 s~~ 460 (788)
T PRK15387 458 SER 460 (788)
T ss_pred Cch
Confidence 643
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.61 E-value=2.5e-15 Score=125.48 Aligned_cols=183 Identities=22% Similarity=0.311 Sum_probs=96.8
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcccc-CCceEEccc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG-KLKPIAASS 83 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~l~l~~ 83 (212)
++|+.|++++|.+. .+|..+. .+|++|++++|.++ .+|..+ ..+|+.|++++|.+. .+|..++ +|+.|++++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSINRIT-ELPERLPSALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCCccC-cCChhHhCCCCEEECcC
Confidence 35677777777777 4555443 47777777777776 344333 235777777777766 5554443 567777777
Q ss_pred ceeeeeCCCcccCCCcccEEEccCCcccccCCcccc-------------------cCCcccEEEccCCCCCCcccCCccc
Q 042715 84 NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLA-------------------SCTELKFLNLVSEGIFSSTLGNLIV 144 (212)
Q Consensus 84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------------~~~~L~~L~l~~n~~~~~~~~~~~~ 144 (212)
|.+. .+|..+. .+|+.|++++|.+. .+|..+. -.++|+.|++++|.+....-.-.++
T Consensus 272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~s 347 (754)
T PRK15370 272 NKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPE 347 (754)
T ss_pred CccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCc
Confidence 7666 3444332 36777777777666 3333221 0123444444444332211111235
Q ss_pred ccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715 145 LESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203 (212)
Q Consensus 145 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~ 203 (212)
|+.|++++|++. .+|..+ .+.|++|++++|.+...++.. ...++.+++.+|...
T Consensus 348 L~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l--~~sL~~LdLs~N~L~ 401 (754)
T PRK15370 348 LQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENL--PAALQIMQASRNNLV 401 (754)
T ss_pred ccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhH--HHHHHHHhhccCCcc
Confidence 555555555554 344333 245556666666555333221 124555556555543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=1.2e-15 Score=127.30 Aligned_cols=185 Identities=23% Similarity=0.300 Sum_probs=110.4
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCC-------------------CCCccEEEcccccc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGN-------------------LKNLSTLCLEHKQL 65 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------l~~L~~L~l~~~~~ 65 (212)
++|++|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+.. .++|+.|++++|.+
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~L 295 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSI 295 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCcc
Confidence 35666666666665 4444332 24555555555544 23322210 12444555555544
Q ss_pred eecCCcccc-CCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCcccCCccc
Q 042715 66 TGRIPSEIG-KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIV 144 (212)
Q Consensus 66 ~~~~~~~l~-~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 144 (212)
+ .+|..++ +++.|++++|.+. .+|..+ .++|+.|++++|.+. .+|..+. ++|+.|++++|.+...+-.-.+.
T Consensus 296 t-~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~ 368 (754)
T PRK15370 296 R-TLPAHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETLPPT 368 (754)
T ss_pred c-cCcccchhhHHHHHhcCCccc-cCCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhhcCC
Confidence 4 2333222 3444555555444 222222 257888888888887 4665443 68999999999875322222468
Q ss_pred ccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc----ccccccccccccCCCc
Q 042715 145 LESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK----QFNTFETSSFDGNPGL 203 (212)
Q Consensus 145 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~l~~l~l~~n~~~ 203 (212)
|+.|++++|++. .+|..+. ..|+.|++++|++...+.... ..+.+..+.+.+||+.
T Consensus 369 L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 369 ITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 999999999998 5676554 368999999999975432221 3467788999999974
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=7.1e-17 Score=123.89 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=17.3
Q ss_pred ccccEEEccCCeeee----ecChhccCCCCccEEEeeCCeee
Q 042715 143 IVLESLDLSNNKLSG----QIPQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 143 ~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~~~ 180 (212)
+.|++|++++|.+++ .+...+..+++|+++++++|.+.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 445555555555431 11223333445555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.58 E-value=4.9e-17 Score=124.77 Aligned_cols=200 Identities=20% Similarity=0.169 Sum_probs=112.7
Q ss_pred ceeecEEEccCCccc------cccCccccccCCCceEEccCCeeeecCCCCCCCCC---CccEEEccccccee----c--
Q 042715 4 CFDIIYIKLSGNQLT------GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLK---NLSTLCLEHKQLTG----R-- 68 (212)
Q Consensus 4 l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~----~-- 68 (212)
.+++++++++++.+. ..++..+..+++|++|+++++.+....+..+..+. +|++|++++|.+.. .
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 345666666666554 12234455666777777777766533333333333 37777777776652 1
Q ss_pred -CCccc-cCCceEEcccceeee----eCCCcccCCCcccEEEccCCccccc----CCcccccCCcccEEEccCCCCCC--
Q 042715 69 -IPSEI-GKLKPIAASSNNFRG----SIPQTCKNEANLAMIELSSNLLEGR----VPKSLASCTELKFLNLVSEGIFS-- 136 (212)
Q Consensus 69 -~~~~l-~~l~~l~l~~n~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~-- 136 (212)
....+ ++++++++++|.++. .....+..+..|++|++++|.+.+. ++..+...++|+.|++++|.+.+
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 11233 566777777777652 1222344556677777777766531 22233444577777777776532
Q ss_pred -----cccCCcccccEEEccCCeeeeecChhcc-----CCCCccEEEeeCCeeec--C---CCCCcccccccccccccCC
Q 042715 137 -----STLGNLIVLESLDLSNNKLSGQIPQQFG-----ELTSLEFFDVSDNLVIG--P---IPQGKQFNTFETSSFDGNP 201 (212)
Q Consensus 137 -----~~~~~~~~L~~L~l~~n~i~~~~~~~~~-----~~~~L~~L~l~~n~~~~--~---~~~~~~~~~l~~l~l~~n~ 201 (212)
..+..+++|++|++++|.+.+.....+. ..+.|++|++++|.+.+ . ......+++++.+++++|.
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 2344566777788877777642222221 13677788888777651 1 1111234567777777776
Q ss_pred Cc
Q 042715 202 GL 203 (212)
Q Consensus 202 ~~ 203 (212)
..
T Consensus 290 l~ 291 (319)
T cd00116 290 FG 291 (319)
T ss_pred Cc
Confidence 53
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=6.4e-17 Score=121.79 Aligned_cols=179 Identities=22% Similarity=0.254 Sum_probs=133.2
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccC-CeeeecCCCCCCCCCCccE----------------------
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEK-NQLTGCIPFEIGNLKNLST---------------------- 57 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~---------------------- 57 (212)
|+.+++|+.||+++|.|+..-|++|.+++.+..|-+.+ |+|+....++|.++..++.
T Consensus 87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l 166 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL 166 (498)
T ss_pred ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence 57789999999999999999999999999998887766 8888655555655544444
Q ss_pred --EEcccccceecCCc-ccc---CCceEEcccce----------------------------------------------
Q 042715 58 --LCLEHKQLTGRIPS-EIG---KLKPIAASSNN---------------------------------------------- 85 (212)
Q Consensus 58 --L~l~~~~~~~~~~~-~l~---~l~~l~l~~n~---------------------------------------------- 85 (212)
|.+..|.+. .++. .+. .++++.+..|.
T Consensus 167 ~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~ 245 (498)
T KOG4237|consen 167 SLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL 245 (498)
T ss_pred chhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhh
Confidence 444444333 1111 121 11222221111
Q ss_pred ---------------eeeeCC-CcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCccccc
Q 042715 86 ---------------FRGSIP-QTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLE 146 (212)
Q Consensus 86 ---------------~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~ 146 (212)
.....| ..|.++++|+++++++|.++...+.+|.....+++|.+..|++. ...|.++..|+
T Consensus 246 c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~ 325 (498)
T KOG4237|consen 246 CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLK 325 (498)
T ss_pred hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccce
Confidence 000111 23567899999999999999888889999999999999999873 37788999999
Q ss_pred EEEccCCeeeeecChhccCCCCccEEEeeCCeee
Q 042715 147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 147 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 180 (212)
.|+|.+|+|+...|.+|..+.+|.+|++-.|.+.
T Consensus 326 tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 326 TLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999999999888999999999999999999774
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=1.8e-14 Score=120.17 Aligned_cols=121 Identities=25% Similarity=0.267 Sum_probs=81.3
Q ss_pred CccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC
Q 042715 54 NLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG 133 (212)
Q Consensus 54 ~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 133 (212)
+|+.|++++|.+. .+|....+++.|++++|.+. .+|.. ..+|+.|++++|.+. .+|.. ...|+.|++++|.
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNR 413 (788)
T ss_pred ccceEecCCCccC-CCCCCCcccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCc
Confidence 3444444444444 33333334444444444444 22322 246888889888888 45543 3579999999998
Q ss_pred CCCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC
Q 042715 134 IFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ 185 (212)
Q Consensus 134 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 185 (212)
+...+ ....+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+.
T Consensus 414 LssIP-~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 414 LTSLP-MLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCCCC-cchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 75422 12357889999999998 7899999999999999999999876544
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=4.6e-16 Score=127.92 Aligned_cols=194 Identities=25% Similarity=0.247 Sum_probs=128.5
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc-------------
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS------------- 71 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------- 71 (212)
++++.|..++|.+....+. .--.+|++++++++.++ ..|+....+.+|+.++..+|++. .+|.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 5677777777777633332 22468999999999999 56688899999999999999875 3322
Q ss_pred -------------cccCCceEEcccceeeeeCCCccc-------------------------CCCcccEEEccCCccccc
Q 042715 72 -------------EIGKLKPIAASSNNFRGSIPQTCK-------------------------NEANLAMIELSSNLLEGR 113 (212)
Q Consensus 72 -------------~l~~l~~l~l~~n~~~~~~~~~~~-------------------------~~~~L~~L~l~~~~~~~~ 113 (212)
.+..+++|++..|.+....+..+. ....|+.|.+.+|.+++.
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 123345566655554321110000 123355555566655544
Q ss_pred CCcccccCCcccEEEccCCCCC--C-cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccc
Q 042715 114 VPKSLASCTELKFLNLVSEGIF--S-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFN 190 (212)
Q Consensus 114 ~~~~~~~~~~L~~L~l~~n~~~--~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 190 (212)
.-..+.++..|+.|++++|++. + ..+.++..|++|+|++|+++ .+|+.+..++.|++|...+|++...+ ...+++
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~ 452 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLP 452 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcC
Confidence 4445666677777777777553 2 44556777777888888887 67777777888888888888777444 777888
Q ss_pred cccccccccCCCcc
Q 042715 191 TFETSSFDGNPGLC 204 (212)
Q Consensus 191 ~l~~l~l~~n~~~~ 204 (212)
+++.++++.|...-
T Consensus 453 qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSE 466 (1081)
T ss_pred cceEEecccchhhh
Confidence 88888888776543
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.39 E-value=2.6e-13 Score=107.28 Aligned_cols=176 Identities=30% Similarity=0.455 Sum_probs=126.9
Q ss_pred ceeecEEEccCCccccccCccccccC-CCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceE
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLENLE-NISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPI 79 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l 79 (212)
.+.++.+++.++.+. .++.....+. +|+.|++++|.+. ..+..+..+++|+.|++++|.+. .++. ..+++.++
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 356788888888887 5655555553 8888888888887 45556778888888888888887 5554 55677888
Q ss_pred EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC--cccCCcccccEEEccCCeeee
Q 042715 80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--STLGNLIVLESLDLSNNKLSG 157 (212)
Q Consensus 80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~L~~L~l~~n~i~~ 157 (212)
++++|.+. .+|........|.++.+++|... ..+..+..+.++..+.+..|+... ..+..++.++.|++++|.+.
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~- 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS- 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-
Confidence 88888877 44444444455888888888544 445567777777777777777654 66777777888888888887
Q ss_pred ecChhccCCCCccEEEeeCCeeecCCCCC
Q 042715 158 QIPQQFGELTSLEFFDVSDNLVIGPIPQG 186 (212)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 186 (212)
.++. ++...+++.|++++|.+...++..
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccc-ccccCccCEEeccCccccccchhh
Confidence 4444 777888888888888776555443
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=8.5e-15 Score=115.11 Aligned_cols=172 Identities=28% Similarity=0.411 Sum_probs=141.0
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccC--CceEEcc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGK--LKPIAAS 82 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--l~~l~l~ 82 (212)
......|++.|.+. .+|..+..+-.|+.+.+.+|.+. .+|.++..+..|.+++++.|.+. ..|..+.. |+.+.++
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVS 151 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEe
Confidence 34456778888887 77887888888888888888888 78888889999999999999887 77777664 4788888
Q ss_pred cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecC
Q 042715 83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIP 160 (212)
Q Consensus 83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~ 160 (212)
+|++. .+|..++....+..|+.+.|.+. ..|..++++..|+.|.+..|... +..+. .-.|..||++.|++. .+|
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecc
Confidence 88887 67788888888999999999988 77888888899999999888774 44455 334788999999998 788
Q ss_pred hhccCCCCccEEEeeCCeeecCC
Q 042715 161 QQFGELTSLEFFDVSDNLVIGPI 183 (212)
Q Consensus 161 ~~~~~~~~L~~L~l~~n~~~~~~ 183 (212)
-.|..+..|++|-|++|.+.+.+
T Consensus 228 v~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhhhhhheeeeeccCCCCCCh
Confidence 88999999999999999987544
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=6.4e-14 Score=106.98 Aligned_cols=202 Identities=17% Similarity=0.139 Sum_probs=121.7
Q ss_pred CceeecEEEccCCccccccC-ccccccCCCceEEccCCeeeec--CCCCCCCCCCccEEEccccccee----cCCccccC
Q 042715 3 LCFDIIYIKLSGNQLTGPIP-YWLENLENISTLWLEKNQLTGC--IPFEIGNLKNLSTLCLEHKQLTG----RIPSEIGK 75 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~ 75 (212)
++++|+.+.+.++.+..... +....|++++.||+++|-+... .......+|+|+.|+++.|++.. ..-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 46677888888877762221 3456788888888888765421 11223567888888888887651 11124556
Q ss_pred CceEEcccceeeeeC-CCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEc
Q 042715 76 LKPIAASSNNFRGSI-PQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDL 150 (212)
Q Consensus 76 l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l 150 (212)
++.|.++.|+++..- ......++++..|.+++|............++.|++|++++|.+.. ..++.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 677777777766321 1223456777777777774221222333455677788888877654 23456777777777
Q ss_pred cCCeeeee-cChh-----ccCCCCccEEEeeCCeeecC--CCCCcccccccccccccCCCcc
Q 042715 151 SNNKLSGQ-IPQQ-----FGELTSLEFFDVSDNLVIGP--IPQGKQFNTFETSSFDGNPGLC 204 (212)
Q Consensus 151 ~~n~i~~~-~~~~-----~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~l~~l~l~~n~~~~ 204 (212)
+.+.+.+. .|+. -...++|++|++..|++... +.....+++++.+.+..|+.--
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 77777632 2222 23457778888888877432 2223355566666666666543
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.29 E-value=5.2e-12 Score=104.81 Aligned_cols=109 Identities=32% Similarity=0.589 Sum_probs=97.0
Q ss_pred cccEEEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEee
Q 042715 99 NLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVS 175 (212)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 175 (212)
.++.|++++|.+.+..|..++.+++|+.|++++|.+ .+..+..+++|+.|+|++|++.+.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 378899999999989999999999999999999976 34678899999999999999999999999999999999999
Q ss_pred CCeeecCCCCCc--ccccccccccccCCCccCCC
Q 042715 176 DNLVIGPIPQGK--QFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 176 ~n~~~~~~~~~~--~~~~l~~l~l~~n~~~~~~~ 207 (212)
+|.+.+.+|... ...++..+.+.+|+..|+.|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999888754 23456788999999999976
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=8.8e-14 Score=109.51 Aligned_cols=171 Identities=24% Similarity=0.333 Sum_probs=144.9
Q ss_pred ccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcccc---CCceEEcccceeeeeCCCcccCCCcccEE
Q 042715 27 NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG---KLKPIAASSNNFRGSIPQTCKNEANLAMI 103 (212)
Q Consensus 27 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~---~l~~l~l~~n~~~~~~~~~~~~~~~L~~L 103 (212)
.+..-...|++.|++. ..|..+..+..|+.+.+..|.+. .+|..+. .+..++++.|.++ .+|..+..++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 4555677899999988 78888888999999999999887 6666554 4577888989887 6676776654 8899
Q ss_pred EccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeec
Q 042715 104 ELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG 181 (212)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 181 (212)
-+++|++. ..|..++....|..|+.+.|.+. +..++++.+|+.|.+..|++. .+|.++..++ |.+||++.|++..
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~ 225 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISY 225 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceee
Confidence 99999999 88888998889999999999884 577888999999999999998 6788888665 9999999999998
Q ss_pred CCCCCcccccccccccccCCCcc
Q 042715 182 PIPQGKQFNTFETSSFDGNPGLC 204 (212)
Q Consensus 182 ~~~~~~~~~~l~~l~l~~n~~~~ 204 (212)
.+-.+..+.+|+++.|++||.+.
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCC
Confidence 88778899999999999999876
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.4e-11 Score=97.51 Aligned_cols=190 Identities=31% Similarity=0.406 Sum_probs=148.7
Q ss_pred EEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCC-CccEEEcccccceec--CCccccCCceEEcccce
Q 042715 9 YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLK-NLSTLCLEHKQLTGR--IPSEIGKLKPIAASSNN 85 (212)
Q Consensus 9 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~--~~~~l~~l~~l~l~~n~ 85 (212)
.++...+.+. ........+..++.+++.++.+. .++.....+. +|+.|++++|.+... ....+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3566666653 22333455688999999999998 5555666664 999999999999832 23567789999999999
Q ss_pred eeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCcccccEEEccCCeeeeecChhc
Q 042715 86 FRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQQF 163 (212)
Q Consensus 86 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 163 (212)
+. .++......++++.|++++|.+. .+|........|+++.+++|.. ....+..++.+..+.+++|++. ..+..+
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~ 251 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESI 251 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchh
Confidence 88 44444446789999999999999 6766655666799999999953 3466778888999999999997 557778
Q ss_pred cCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715 164 GELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC 204 (212)
Q Consensus 164 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~ 204 (212)
..+++++.|++++|.+..... ...+..++.+++.+|...-
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence 889999999999999986655 6788899999999987653
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.22 E-value=2e-11 Score=70.24 Aligned_cols=61 Identities=38% Similarity=0.401 Sum_probs=56.1
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL 65 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 65 (212)
++|++|++++|.+....++.|..+++|++|++++|.+....+++|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999966677999999999999999999988899999999999999999874
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.3e-12 Score=97.79 Aligned_cols=179 Identities=23% Similarity=0.221 Sum_probs=131.3
Q ss_pred CceeecEEEccCCcccc--ccCccccccCCCceEEccCCeeeecCCCC-CCCCCCccEEEccccccee----cCCccccC
Q 042715 3 LCFDIIYIKLSGNQLTG--PIPYWLENLENISTLWLEKNQLTGCIPFE-IGNLKNLSTLCLEHKQLTG----RIPSEIGK 75 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~----~~~~~l~~ 75 (212)
.|++++.||++.|-+.. .+......+|+|+.|+++.|++....... -..++.|+.|.++.|.++. .+...+++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 58999999999987652 23334567999999999999876222211 1356889999999998872 34467899
Q ss_pred CceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCC--cccccCCcccEEEccCCCCCC---cc------cCCccc
Q 042715 76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP--KSLASCTELKFLNLVSEGIFS---ST------LGNLIV 144 (212)
Q Consensus 76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~---~~------~~~~~~ 144 (212)
+..|++.+|...........-+..|++|++++|.+- ..+ ...+.++.|+.|+++.+++.. .. ...+++
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 999999999522222233344568999999999886 333 456889999999999998743 11 246789
Q ss_pred ccEEEccCCeeeeec-ChhccCCCCccEEEeeCCeeecC
Q 042715 145 LESLDLSNNKLSGQI-PQQFGELTSLEFFDVSDNLVIGP 182 (212)
Q Consensus 145 L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~~~~~ 182 (212)
|++|+++.|+|.++- -..+..+++|+.|.+..|.+...
T Consensus 303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 999999999996321 23456678899999999988643
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=6e-11 Score=82.39 Aligned_cols=103 Identities=23% Similarity=0.315 Sum_probs=22.6
Q ss_pred ceeecEEEccCCccccccCcccc-ccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccCCce
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLE-NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGKLKP 78 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~ 78 (212)
+..+++|++.++.|. .+. .+. .+.+|+.|++++|.+.. . +.+..++.|+.|++++|+++ .+. ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 334566666666665 222 232 35566666666666652 2 23555666666666666665 221 12344444
Q ss_pred EEcccceeeeeC-CCcccCCCcccEEEccCCccc
Q 042715 79 IAASSNNFRGSI-PQTCKNEANLAMIELSSNLLE 111 (212)
Q Consensus 79 l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 111 (212)
|++++|.+...- -..+..+++|+.|++.+|.+.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555444443211 112233444444444444443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=2.6e-11 Score=84.20 Aligned_cols=104 Identities=28% Similarity=0.341 Sum_probs=34.7
Q ss_pred CCceEEcccceeeeeCCCccc-CCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCc--cc-CCcccccEEEc
Q 042715 75 KLKPIAASSNNFRGSIPQTCK-NEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSS--TL-GNLIVLESLDL 150 (212)
Q Consensus 75 ~l~~l~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~-~~~~~L~~L~l 150 (212)
++++|++.+|.++.. ..++ .+.+++.|++++|.+. .++ .+..++.|+.|++++|.+..- .+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 457777777777632 2333 4567778888888777 332 466677778888888777542 23 35677788888
Q ss_pred cCCeeeee-cChhccCCCCccEEEeeCCeeecC
Q 042715 151 SNNKLSGQ-IPQQFGELTSLEFFDVSDNLVIGP 182 (212)
Q Consensus 151 ~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~ 182 (212)
++|+|.+. .-..+..+++|++|++.+|+++..
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 88777632 124456677778888888877644
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=5e-12 Score=93.01 Aligned_cols=129 Identities=28% Similarity=0.356 Sum_probs=78.6
Q ss_pred CCccEEEcccccceecCCc---cccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEc
Q 042715 53 KNLSTLCLEHKQLTGRIPS---EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNL 129 (212)
Q Consensus 53 ~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 129 (212)
..|..+++++|.|. .+.. -+++++.|++++|++.. + ..+..+.+|+.|++++|.+. ....+-..+.+++.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 44555566666554 2222 23445555555555542 2 23555677777777777776 44444455667777777
Q ss_pred cCCCCCC-cccCCcccccEEEccCCeeeee-cChhccCCCCccEEEeeCCeeecCCCC
Q 042715 130 VSEGIFS-STLGNLIVLESLDLSNNKLSGQ-IPQQFGELTSLEFFDVSDNLVIGPIPQ 185 (212)
Q Consensus 130 ~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~ 185 (212)
+.|.+.. .-++.+-+|..||+++|+|... --..++.+|+|+++.|.+|++.+.+..
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 7776643 3345566677888888877521 123466778888888888888765544
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=3.5e-12 Score=95.08 Aligned_cols=177 Identities=18% Similarity=0.221 Sum_probs=94.1
Q ss_pred CceeecEEEccCCccccc----cCccccccCCCceEEccCCee---eecCC-------CCCCCCCCccEEEcccccceec
Q 042715 3 LCFDIIYIKLSGNQLTGP----IPYWLENLENISTLWLEKNQL---TGCIP-------FEIGNLKNLSTLCLEHKQLTGR 68 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~---~~~~~-------~~~~~l~~L~~L~l~~~~~~~~ 68 (212)
.+..++++++++|.+... +...+...+.|+..++++-.- ....| .++..+|+|+.++++.|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 356788888888887632 333445556777777766421 11222 2344566777777777777654
Q ss_pred CCccc-------cCCceEEcccceeeee-------------CCCcccCCCcccEEEccCCccccc----CCcccccCCcc
Q 042715 69 IPSEI-------GKLKPIAASSNNFRGS-------------IPQTCKNEANLAMIELSSNLLEGR----VPKSLASCTEL 124 (212)
Q Consensus 69 ~~~~l-------~~l~~l~l~~n~~~~~-------------~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L 124 (212)
.++.+ ..|++|++.+|.+... ...-....+.|+.+.+.+|.+... ....+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 44332 3456777777765421 111222345666666666655421 12234444556
Q ss_pred cEEEccCCCCCC-------cccCCcccccEEEccCCeeeee----cChhccCCCCccEEEeeCCee
Q 042715 125 KFLNLVSEGIFS-------STLGNLIVLESLDLSNNKLSGQ----IPQQFGELTSLEFFDVSDNLV 179 (212)
Q Consensus 125 ~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~ 179 (212)
+.+++..|.+.+ ..+..+++|+.||+.+|.++.. +...+..+++|+.|++.+|.+
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 666666665533 2234555566666655555421 223444445555555555544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=1.1e-11 Score=91.34 Aligned_cols=128 Identities=24% Similarity=0.260 Sum_probs=94.4
Q ss_pred CCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceec-CCccccCCceEEcccceeeeeCCCcccCCCcccEEEccC
Q 042715 29 ENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR-IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSS 107 (212)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 107 (212)
+.|+++|+++|.|+ .+..+..-+|+++.|++++|.+... -...+++|++|++++|.++ .+..+-.++-++++|.+++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 56777888888877 5566677778888888888877621 1245667788888888766 3333444567889999999
Q ss_pred CcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEccCCeeeeecCh
Q 042715 108 NLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSGQIPQ 161 (212)
Q Consensus 108 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~ 161 (212)
|.+. .. ..++.+.+|..|++.+|++.. ..+++++.|+++.|-+|.+. .+++
T Consensus 362 N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 362 NKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVD 416 (490)
T ss_pred hhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccch
Confidence 9887 33 357788889999999998743 67788999999999999887 4443
No 36
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=6e-10 Score=92.67 Aligned_cols=103 Identities=32% Similarity=0.541 Sum_probs=54.9
Q ss_pred CceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccCCceEEcccceeeeeCCCcccCCCcccEEEccC
Q 042715 31 ISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSS 107 (212)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 107 (212)
++.|+++++.+.+..|..+..+++|+.|++++|.+.+.+|.. +++|+.|++++|.+++.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 445555555555555555555555555555555554444432 23345555555555555555555666666666666
Q ss_pred CcccccCCcccccC-CcccEEEccCCC
Q 042715 108 NLLEGRVPKSLASC-TELKFLNLVSEG 133 (212)
Q Consensus 108 ~~~~~~~~~~~~~~-~~L~~L~l~~n~ 133 (212)
|.+.+..|..++.. .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 66666666555432 234455555553
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.97 E-value=9.1e-12 Score=101.11 Aligned_cols=125 Identities=24% Similarity=0.264 Sum_probs=94.6
Q ss_pred CceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccC
Q 042715 76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSN 152 (212)
Q Consensus 76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~ 152 (212)
|.+.++++|.+. .....++-++.++.|++++|++++ .. ++..++.|++|++++|.+.. ....+++ |+.|.+.+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 344555666654 344555566789999999999984 33 78899999999999997743 2233555 99999999
Q ss_pred CeeeeecChhccCCCCccEEEeeCCeeecC--CCCCcccccccccccccCCCccCC
Q 042715 153 NKLSGQIPQQFGELTSLEFFDVSDNLVIGP--IPQGKQFNTFETSSFDGNPGLCGE 206 (212)
Q Consensus 153 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~l~~l~l~~n~~~~~~ 206 (212)
|.++ ...+ +.++.+|+.||+++|-+.+. +.....+..+++|+|.|||..|.+
T Consensus 242 N~l~-tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 242 NALT-TLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cHHH-hhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9987 4443 67899999999999988753 344457888999999999998865
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=1.4e-09 Score=62.45 Aligned_cols=57 Identities=37% Similarity=0.597 Sum_probs=31.8
Q ss_pred cccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCee
Q 042715 123 ELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV 179 (212)
Q Consensus 123 ~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~ 179 (212)
+|+.|++++|.+. +..|.++++|++|++++|.+....+.+|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3444444444331 13445555666666666666655556666666666666666643
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.89 E-value=5.5e-11 Score=88.80 Aligned_cols=179 Identities=18% Similarity=0.221 Sum_probs=116.2
Q ss_pred cccccCCCceEEccCCeeeecCCCC----CCCCCCccEEEcccccceecC----------------CccccCCceEEccc
Q 042715 24 WLENLENISTLWLEKNQLTGCIPFE----IGNLKNLSTLCLEHKQLTGRI----------------PSEIGKLKPIAASS 83 (212)
Q Consensus 24 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~----------------~~~l~~l~~l~l~~ 83 (212)
.+..+++|++++|++|-+....+.. +..+..|++|.+.+|.+.... .++-++|+.+....
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 3445677888888887765333322 345677888888887665211 12223567777777
Q ss_pred ceeeee----CCCcccCCCcccEEEccCCccccc----CCcccccCCcccEEEccCCCCCC-------cccCCcccccEE
Q 042715 84 NNFRGS----IPQTCKNEANLAMIELSSNLLEGR----VPKSLASCTELKFLNLVSEGIFS-------STLGNLIVLESL 148 (212)
Q Consensus 84 n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L 148 (212)
|++... +...++..+.|..+.+..|.+... ....+..++.|+.|++.+|.+.. ..+..+++|+.+
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 776432 223455567888888888877622 22356778889999999887643 556677788889
Q ss_pred EccCCeeeeecChhc----c-CCCCccEEEeeCCeeecCC-----CCCcccccccccccccCCC
Q 042715 149 DLSNNKLSGQIPQQF----G-ELTSLEFFDVSDNLVIGPI-----PQGKQFNTFETSSFDGNPG 202 (212)
Q Consensus 149 ~l~~n~i~~~~~~~~----~-~~~~L~~L~l~~n~~~~~~-----~~~~~~~~l~~l~l~~n~~ 202 (212)
++++|.+.+....++ . ..|.|+.|.+.+|.++..- -.....+.+++|.+.+|..
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 988888875433322 2 3588899999999876321 1112467788888888887
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=4e-10 Score=89.67 Aligned_cols=124 Identities=23% Similarity=0.240 Sum_probs=65.4
Q ss_pred eecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceEEcccc
Q 042715 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPIAASSN 84 (212)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l~l~~n 84 (212)
.+..+.+..+.+. ..-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.|+... ...+..|++|++.+|
T Consensus 73 ~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 73 SLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred hHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccchhhccchhhheeccC
Confidence 3444444555444 222234556666666666666662 2222556666666666666665221 123445666666666
Q ss_pred eeeeeCCCcccCCCcccEEEccCCcccccCCcc-cccCCcccEEEccCCCC
Q 042715 85 NFRGSIPQTCKNEANLAMIELSSNLLEGRVPKS-LASCTELKFLNLVSEGI 134 (212)
Q Consensus 85 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~ 134 (212)
.+... ..+..+..++.+++++|.+....+ . ...+..++.+.+..|.+
T Consensus 151 ~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 151 LISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSI 198 (414)
T ss_pred cchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCch
Confidence 66532 233345666666666666652222 1 24455566666666544
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=5.9e-10 Score=88.66 Aligned_cols=172 Identities=24% Similarity=0.291 Sum_probs=108.4
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceEE
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPIA 80 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l~ 80 (212)
..+++++.+++.+|.+. .+...+..+++|++|++++|.|+... .+..++.|+.|++.+|.+...- ...+..++.++
T Consensus 92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCCccchhhhccc
Confidence 45788999999999988 44333678999999999999988433 4667788999999999887221 22367788889
Q ss_pred cccceeeeeCCCc-ccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCccc--ccEEEccCCeee
Q 042715 81 ASSNNFRGSIPQT-CKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIV--LESLDLSNNKLS 156 (212)
Q Consensus 81 l~~n~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~--L~~L~l~~n~i~ 156 (212)
+++|.+...-. . ...+.+++.+.+.+|.+.. + ..+..+..+..+.+..|.+.. ..+..... |+.+++++|.+.
T Consensus 169 l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~-i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 169 LSYNRIVDIEN-DELSELISLEELDLGGNSIRE-I-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred CCcchhhhhhh-hhhhhccchHHHhccCCchhc-c-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc
Confidence 99988764332 1 3566778888888887662 2 223333334444555554432 22222222 556666666665
Q ss_pred eecChhccCCCCccEEEeeCCeee
Q 042715 157 GQIPQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~n~~~ 180 (212)
..+..+..+..+..+++.+|.+.
T Consensus 246 -~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 246 -RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred -cccccccccccccccchhhcccc
Confidence 33233445555555555555543
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=3.4e-09 Score=78.15 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=28.1
Q ss_pred CcccEEEccCCCCCC----cccCCcccccEEEccCCeeeeec-ChhccCCCCccEEEeeCCeee
Q 042715 122 TELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSGQI-PQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 122 ~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~~~ 180 (212)
+++..+.+..|.+.. ..+..++.+..|+|+.++|.++. -+++.+++.+..|.+.++++.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 444444444443311 33334444445555555554332 244555555555555555553
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.4e-10 Score=85.31 Aligned_cols=171 Identities=20% Similarity=0.198 Sum_probs=122.2
Q ss_pred eecEEEccCCccc-cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccc-ccee----cCCccccCCceE
Q 042715 6 DIIYIKLSGNQLT-GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK-QLTG----RIPSEIGKLKPI 79 (212)
Q Consensus 6 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~----~~~~~l~~l~~l 79 (212)
.|+++|++...++ ..+...+..|.+|+.|.++++.+...+...++.-.+|+.++++.+ .++. -+..+...|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4788899988776 345566788999999999999988766677788899999999887 3432 123455678899
Q ss_pred EcccceeeeeCCC-ccc-CCCcccEEEccCCccc--cc-CCcccccCCcccEEEccCCCCCC----cccCCcccccEEEc
Q 042715 80 AASSNNFRGSIPQ-TCK-NEANLAMIELSSNLLE--GR-VPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDL 150 (212)
Q Consensus 80 ~l~~n~~~~~~~~-~~~-~~~~L~~L~l~~~~~~--~~-~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l 150 (212)
++++|.+...... .+. --.++..|+++|+.-. .. +.-....+++|.+|+++++.... ..+..++.|+++++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 9999887643221 111 1247888999888432 11 11123578999999999987654 33457888999999
Q ss_pred cCCeeeeecCh---hccCCCCccEEEeeCCe
Q 042715 151 SNNKLSGQIPQ---QFGELTSLEFFDVSDNL 178 (212)
Q Consensus 151 ~~n~i~~~~~~---~~~~~~~L~~L~l~~n~ 178 (212)
+.|... +|. .+...|+|.+|+..++-
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 988753 454 45567999999988774
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=9.2e-10 Score=81.05 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=120.5
Q ss_pred ccCCCceEEccCCeeee--cCCCCCCCCCCccEEEccccccee---cCCccccCCceEEcccceeeeeC-CCcccCCCcc
Q 042715 27 NLENISTLWLEKNQLTG--CIPFEIGNLKNLSTLCLEHKQLTG---RIPSEIGKLKPIAASSNNFRGSI-PQTCKNEANL 100 (212)
Q Consensus 27 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~~-~~~~~~~~~L 100 (212)
.+..++++|+.+|.|+. .+...+.++|.|++|+++.|.+.. ..|....+++++.+.+..+.-.. ......++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46788899999998873 233446788999999999998763 33334457788888777655432 2345567788
Q ss_pred cEEEccCCccccc--CCcccc-cCCcccEEEccCCCCCC-----cccCCcccccEEEccCCeeeeecC-hhccCCCCccE
Q 042715 101 AMIELSSNLLEGR--VPKSLA-SCTELKFLNLVSEGIFS-----STLGNLIVLESLDLSNNKLSGQIP-QQFGELTSLEF 171 (212)
Q Consensus 101 ~~L~l~~~~~~~~--~~~~~~-~~~~L~~L~l~~n~~~~-----~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~ 171 (212)
++|+++.|..... ...... .-+.+++++...|.... .-..-++++..+.+..+.+.+.-. ..+..++.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 8888888854421 111122 22467777777774421 222346788888899997764432 34456788889
Q ss_pred EEeeCCeeec--CCCCCcccccccccccccCCCc
Q 042715 172 FDVSDNLVIG--PIPQGKQFNTFETSSFDGNPGL 203 (212)
Q Consensus 172 L~l~~n~~~~--~~~~~~~~~~l~~l~l~~n~~~ 203 (212)
|+|+.|++.+ .+.+...|+++..+.+.+||..
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 9999999975 4566679999999999999864
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=1.2e-08 Score=87.40 Aligned_cols=176 Identities=21% Similarity=0.232 Sum_probs=96.3
Q ss_pred CceeecEEEccCCc--cccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCC---c
Q 042715 3 LCFDIIYIKLSGNQ--LTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKL---K 77 (212)
Q Consensus 3 ~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l---~ 77 (212)
.+++|++|-+..|. +.....+.|..++.|++||+++|.-.+..|..++.+-+||+|+++++.+. .+|.++.+| .
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 34567777777664 33233334667778888888776655577777777777888888777776 677666543 5
Q ss_pred eEEcccceeeeeCCCcccCCCcccEEEccCCccc--ccCCcccccCCcccEEEccCCCC-CCcccCCccccc----EEEc
Q 042715 78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE--GRVPKSLASCTELKFLNLVSEGI-FSSTLGNLIVLE----SLDL 150 (212)
Q Consensus 78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~~~L~----~L~l 150 (212)
+|++..+......+.....+.+|++|.+...... ...-..+..+..|+.+....... .-..+..+..|. .+.+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence 6666655544344444455677777777554322 11111122333333333222111 001122222222 2222
Q ss_pred cCCeeeeecChhccCCCCccEEEeeCCeee
Q 042715 151 SNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 151 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 180 (212)
.++... ..+..+..+.+|+.|.+.++...
T Consensus 702 ~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 702 EGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred cccccc-eeecccccccCcceEEEEcCCCc
Confidence 222222 34445677888888888888775
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.47 E-value=8.7e-08 Score=82.24 Aligned_cols=82 Identities=26% Similarity=0.317 Sum_probs=66.3
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCc
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLK 77 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~ 77 (212)
|..++.|+.||+++|.-.+.+|+.++.+-+||+|++++..+. .+|..+..+..|.+|++..+.....++. .+++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 346899999999987766689999999999999999999998 7888999999999999998765433332 356677
Q ss_pred eEEccc
Q 042715 78 PIAASS 83 (212)
Q Consensus 78 ~l~l~~ 83 (212)
+|.+..
T Consensus 646 ~L~l~~ 651 (889)
T KOG4658|consen 646 VLRLPR 651 (889)
T ss_pred EEEeec
Confidence 766543
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.37 E-value=2.1e-07 Score=49.31 Aligned_cols=38 Identities=37% Similarity=0.628 Sum_probs=30.7
Q ss_pred ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeec
Q 042715 143 IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG 181 (212)
Q Consensus 143 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 181 (212)
++|++|++++|+|+ .+|..++.+++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46889999999998 667678999999999999998874
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.31 E-value=4.7e-07 Score=47.97 Aligned_cols=37 Identities=38% Similarity=0.491 Sum_probs=24.8
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeee
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLT 42 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 42 (212)
++|++|++++|++. .+|+.++.|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777777 55555777777777777777766
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=7.1e-08 Score=63.38 Aligned_cols=111 Identities=22% Similarity=0.205 Sum_probs=78.0
Q ss_pred cCCCcccEEEccCCcccccCCcccc-cCCcccEEEccCCCC--CCcccCCcccccEEEccCCeeeeecChhccCCCCccE
Q 042715 95 KNEANLAMIELSSNLLEGRVPKSLA-SCTELKFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEF 171 (212)
Q Consensus 95 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 171 (212)
.....|...++++|.+. .+|+.|. ..+..+.+++.+|.+ +|..+..++.|+.++++.|.+. ..|..+..+.++..
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 34456777888888888 4555554 445788888888876 4455778888888888888887 66777777888888
Q ss_pred EEeeCCeeecCCCCCcccccccccccccCCCccCCC
Q 042715 172 FDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 172 L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 207 (212)
|+..+|++....-+...........+.++||.-+|+
T Consensus 128 Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 128 LDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred hcCCCCccccCcHHHhccccHHHHHhcCCcccccCc
Confidence 888888776444333344444555677788777665
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.18 E-value=3.5e-06 Score=59.05 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=37.3
Q ss_pred cccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee--cCCCCCccccccccccccc
Q 042715 123 ELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI--GPIPQGKQFNTFETSSFDG 199 (212)
Q Consensus 123 ~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~l~~l~l~~ 199 (212)
+...+++++|.+.. ..+..++.|..|.+.+|.|+++.|..-..+++++.|.+.+|.+. +.+.....+++|+.|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 34444555554432 33444555555555555555444443334455555555555443 2233333445555555555
Q ss_pred CC
Q 042715 200 NP 201 (212)
Q Consensus 200 n~ 201 (212)
||
T Consensus 123 Np 124 (233)
T KOG1644|consen 123 NP 124 (233)
T ss_pred Cc
Confidence 54
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=1.7e-08 Score=82.65 Aligned_cols=122 Identities=25% Similarity=0.223 Sum_probs=82.7
Q ss_pred ecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEccc
Q 042715 7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAASS 83 (212)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~~ 83 (212)
|-+.+++.|.+. .+.+++.-+++++.|++++|+++.. +.+..+++|++||+++|+++ .+|. .-..|+-|.+.+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 444556666665 5666777788999999999988833 37788899999999999887 4432 122467777777
Q ss_pred ceeeeeCCCcccCCCcccEEEccCCccccc-CCcccccCCcccEEEccCCCC
Q 042715 84 NNFRGSIPQTCKNEANLAMIELSSNLLEGR-VPKSLASCTELKFLNLVSEGI 134 (212)
Q Consensus 84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~ 134 (212)
|-++.. ..+.++.+|+.|++++|-+.+- --..++.+..|+.|.+.+|.+
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 766532 3556677788888888765521 113455667777788887765
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.16 E-value=2.5e-07 Score=67.65 Aligned_cols=176 Identities=19% Similarity=0.222 Sum_probs=102.9
Q ss_pred ceeecEEEccCCccccccC----ccccccCCCceEEccCCeee---ecC-------CCCCCCCCCccEEEcccccceecC
Q 042715 4 CFDIIYIKLSGNQLTGPIP----YWLENLENISTLWLEKNQLT---GCI-------PFEIGNLKNLSTLCLEHKQLTGRI 69 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~---~~~-------~~~~~~l~~L~~L~l~~~~~~~~~ 69 (212)
+..+..+++++|.|...-. ..+++-.+|+..+++.-... ... ..++..||.|+..+++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5677888888888774322 23444566777766654211 111 123557788888888888877666
Q ss_pred Cccc-------cCCceEEcccceeeeeCCCc-------------ccCCCcccEEEccCCcccccCCc-----ccccCCcc
Q 042715 70 PSEI-------GKLKPIAASSNNFRGSIPQT-------------CKNEANLAMIELSSNLLEGRVPK-----SLASCTEL 124 (212)
Q Consensus 70 ~~~l-------~~l~~l~l~~n~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L 124 (212)
|..+ ..+.+|.+++|.+-..-..- ...-+.|+.+.+.+|++. ..+. .+..-..|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence 5433 35678888887654211111 112456777777777665 2222 12223467
Q ss_pred cEEEccCCCCCCcc--------cCCcccccEEEccCCeeeee----cChhccCCCCccEEEeeCCeee
Q 042715 125 KFLNLVSEGIFSST--------LGNLIVLESLDLSNNKLSGQ----IPQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 125 ~~L~l~~n~~~~~~--------~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~ 180 (212)
+.+.+..|.+.+.- ...+.+|+.|||.+|.++-. ...++..++.|+.|.+.+|-++
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 77777777775531 23456677777777766522 2334445566777777777554
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=1e-05 Score=56.79 Aligned_cols=121 Identities=20% Similarity=0.204 Sum_probs=57.2
Q ss_pred CceEEccCCeeeecCCCCCCCCCCccEEEccccccee-cCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCc
Q 042715 31 ISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG-RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNL 109 (212)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 109 (212)
-+++++.+.++.... .--....+...+++++|.+.. ...+.++.|.+|.+.+|+++..-|..-..+++++.|.+.+|.
T Consensus 21 e~e~~LR~lkip~ie-nlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE-NLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchh-hccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 355666665554111 111122345566777776641 122445556666666666654333222334456666666665
Q ss_pred cccc-CCcccccCCcccEEEccCCCCCC------cccCCcccccEEEccC
Q 042715 110 LEGR-VPKSLASCTELKFLNLVSEGIFS------STLGNLIVLESLDLSN 152 (212)
Q Consensus 110 ~~~~-~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~L~~L~l~~ 152 (212)
+... .-..+..++.|+.|.+-+|.+.. ..+..+++|+.||...
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 5411 01233455555555555554432 2223444555555443
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=2.3e-05 Score=61.51 Aligned_cols=15 Identities=0% Similarity=-0.121 Sum_probs=7.4
Q ss_pred ceeecEEEccCCccc
Q 042715 4 CFDIIYIKLSGNQLT 18 (212)
Q Consensus 4 l~~L~~L~l~~~~~~ 18 (212)
|.+++.|+++++.+.
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 344555555555444
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=1.3e-07 Score=62.11 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=67.8
Q ss_pred eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCee
Q 042715 78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKL 155 (212)
Q Consensus 78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i 155 (212)
.+++++|.+....+......+.++.+++++|.++ .+|..+..++.|+.++++.|.+. +..+..+.++..|+..+|.+
T Consensus 57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 57 KISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred EEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 3445555544222222234457788888888888 67777888999999999998773 35555688888888888888
Q ss_pred eeecChhccCCCCccEEEeeCCeeecCCCC
Q 042715 156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQ 185 (212)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 185 (212)
. .++..+-.-......++..+.+.+.-+.
T Consensus 136 ~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 136 A-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred c-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 6 5554333323333445566666554444
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7.5e-08 Score=71.23 Aligned_cols=178 Identities=18% Similarity=0.151 Sum_probs=116.5
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCe-eeec-CCCCCCCCCCccEEEcccccceecC----Cccc-c
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQ-LTGC-IPFEIGNLKNLSTLCLEHKQLTGRI----PSEI-G 74 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~----~~~l-~ 74 (212)
+.|.+|+.|.+.++++.+.+...+++..+|+.|+++.+. ++.. ..--+..+..|..|++++|.+.... ...+ +
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 457889999999999998888889999999999999874 4311 1122567899999999999775322 1122 2
Q ss_pred CCceEEcccceee---eeCCCcccCCCcccEEEccCCcc-cccCCcccccCCcccEEEccCCCCCC----cccCCccccc
Q 042715 75 KLKPIAASSNNFR---GSIPQTCKNEANLAMIELSSNLL-EGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLE 146 (212)
Q Consensus 75 ~l~~l~l~~n~~~---~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~ 146 (212)
++..|+++++.-. ..+......++++..|+++.+.. ....-..+..++-|+++.++.|..++ ..+...+.|.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceE
Confidence 5667777776421 11222345678999999998843 32222345677889999999986543 4456788999
Q ss_pred EEEccCCeeeeecChhccCCCCccEEEeeCCee
Q 042715 147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV 179 (212)
Q Consensus 147 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~ 179 (212)
+|++.++--.+..--....+++|+.-....|.+
T Consensus 367 yLdv~g~vsdt~mel~~e~~~~lkin~q~~~~i 399 (419)
T KOG2120|consen 367 YLDVFGCVSDTTMELLKEMLSHLKINCQHFNFI 399 (419)
T ss_pred EEEeccccCchHHHHHHHhCccccccceeeeee
Confidence 999877643322222223456665433333333
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=0.00011 Score=57.71 Aligned_cols=135 Identities=14% Similarity=0.226 Sum_probs=80.2
Q ss_pred ccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcccc-CCceEEcccceeeeeCCCcccCCCcccEE
Q 042715 25 LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG-KLKPIAASSNNFRGSIPQTCKNEANLAMI 103 (212)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~l~l~~n~~~~~~~~~~~~~~~L~~L 103 (212)
+..+.++++|++++|.++ ..| .-..+|+.|.+++|.-...+|..++ +|+.|.+++|.....+| .+|+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP------~sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP------ESVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc------cccceE
Confidence 445789999999999877 445 1234699999988644446665554 68899998874222333 356777
Q ss_pred EccCCcccccCCcccccC-CcccEEEccCCC-CCCcccC--CcccccEEEccCCeeeeecChhccCCCCccEEEeeCC
Q 042715 104 ELSSNLLEGRVPKSLASC-TELKFLNLVSEG-IFSSTLG--NLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177 (212)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~-~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 177 (212)
.+..+... . +..+ ++|+.|.+.++. ....... -.++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 118 ~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCc-c----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 77655433 1 2222 256666664322 1111111 1256888888877654 3443332 56778887765
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=2.8e-06 Score=71.45 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=6.8
Q ss_pred CCCccEEEeeCCee
Q 042715 166 LTSLEFFDVSDNLV 179 (212)
Q Consensus 166 ~~~L~~L~l~~n~~ 179 (212)
+|.|+.||.+++.+
T Consensus 249 LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 249 LPELRFLDCSGTDI 262 (699)
T ss_pred CccccEEecCCcch
Confidence 44555555554443
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.79 E-value=4.6e-06 Score=61.24 Aligned_cols=179 Identities=18% Similarity=0.125 Sum_probs=97.6
Q ss_pred cccccCCCceEEccCCeeeecCCCC----CCCCCCccEEEcccccceecCC----------------ccccCCceEEccc
Q 042715 24 WLENLENISTLWLEKNQLTGCIPFE----IGNLKNLSTLCLEHKQLTGRIP----------------SEIGKLKPIAASS 83 (212)
Q Consensus 24 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~----------------~~l~~l~~l~l~~ 83 (212)
++.+||+|+..+++.|.+....|.. +..-..|.+|.+.+|.+..... ..-+.|+++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3455677777777776655333322 3344566677777665542211 1223456666666
Q ss_pred ceeeeeCC----CcccCCCcccEEEccCCcccccCC-----cccccCCcccEEEccCCCCCC-------cccCCcccccE
Q 042715 84 NNFRGSIP----QTCKNEANLAMIELSSNLLEGRVP-----KSLASCTELKFLNLVSEGIFS-------STLGNLIVLES 147 (212)
Q Consensus 84 n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~ 147 (212)
|++..-.. ..+..-.+|+++.+.+|.+...-. ..+.++.+|+.|++++|.++. ......+.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 65542111 112222467777777777662200 123456778888888886643 33445566788
Q ss_pred EEccCCeeeeecChhc----c--CCCCccEEEeeCCeeecCCC------CC--cccccccccccccCCC
Q 042715 148 LDLSNNKLSGQIPQQF----G--ELTSLEFFDVSDNLVIGPIP------QG--KQFNTFETSSFDGNPG 202 (212)
Q Consensus 148 L~l~~n~i~~~~~~~~----~--~~~~L~~L~l~~n~~~~~~~------~~--~~~~~l~~l~l~~n~~ 202 (212)
|.+.+|-++.....++ . ..|+|..|..++|...+... .. ..++-+..+.+.||.+
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 8887777654332211 1 24777888888886543221 11 1455566666666654
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.74 E-value=0.00019 Score=47.46 Aligned_cols=118 Identities=20% Similarity=0.251 Sum_probs=42.9
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEc
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAA 81 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l 81 (212)
.+|++|+.+.+.. .+.......|..+.+|+.+.+.++ +......+|..+++++.+.+..+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~------------------ 68 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN------------------ 68 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST------------------
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc------------------
Confidence 3444555555543 233233344555555555555443 33333444555545555555332
Q ss_pred ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCC--CCCCcccCCcccc
Q 042715 82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSE--GIFSSTLGNLIVL 145 (212)
Q Consensus 82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~L 145 (212)
+.......+...++++.+.+..+ +.......+..+ .++.+.+..+ .+....|.++++|
T Consensus 69 ----~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 69 ----LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSNITKIEENAFKNCTKL 128 (129)
T ss_dssp ----T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB-SS----GGG-----
T ss_pred ----ccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCCccEECCccccccccC
Confidence 11122234455666777766554 332334455555 6666666543 1223444555444
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=1.6e-05 Score=67.04 Aligned_cols=146 Identities=17% Similarity=0.190 Sum_probs=99.5
Q ss_pred CCCceEEccCCeee-ecCC-CCCCCCCCccEEEccccccee----cCCccccCCceEEcccceeeeeCCCcccCCCcccE
Q 042715 29 ENISTLWLEKNQLT-GCIP-FEIGNLKNLSTLCLEHKQLTG----RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAM 102 (212)
Q Consensus 29 ~~L~~L~l~~~~~~-~~~~-~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~ 102 (212)
.+|++|++++...- ...+ ..-.-+|.|+.|.+++-.+.. .....|++|..|++++.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 67899999885422 1111 112457999999998865531 3557889999999999988744 56778899999
Q ss_pred EEccCCcccc-cCCcccccCCcccEEEccCCCCCC---------cccCCcccccEEEccCCeeeeecChh-ccCCCCccE
Q 042715 103 IELSSNLLEG-RVPKSLASCTELKFLNLVSEGIFS---------STLGNLIVLESLDLSNNKLSGQIPQQ-FGELTSLEF 171 (212)
Q Consensus 103 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~---------~~~~~~~~L~~L~l~~n~i~~~~~~~-~~~~~~L~~ 171 (212)
|.+.+-.+.. ..-..+..+.+|+.||++...... ..-..+|.|+.||.+++.+...+-+. ...-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9887766652 122346678999999999875533 12235789999999988887544332 334566665
Q ss_pred EEeeC
Q 042715 172 FDVSD 176 (212)
Q Consensus 172 L~l~~ 176 (212)
+..-+
T Consensus 280 i~~~~ 284 (699)
T KOG3665|consen 280 IAALD 284 (699)
T ss_pred hhhhh
Confidence 55443
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.39 E-value=0.0015 Score=43.05 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=50.2
Q ss_pred ccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccE
Q 042715 23 YWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAM 102 (212)
Q Consensus 23 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~ 102 (212)
..|.++.+|+.+.+.. .+......+|..+.+|+.+.+..+ +. . .-...+....+++.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~--------------------i~~~~F~~~~~l~~ 62 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-S--------------------IGDNAFSNCKSLES 62 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-C--------------------E-TTTTTT-TT-EE
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-c--------------------cceeeeeccccccc
Confidence 3566777777777764 344455566777767777666553 22 1 11234455556777
Q ss_pred EEccCCcccccCCcccccCCcccEEEccCCC--CCCcccCCcccccEEEccCCeeeeecChhccCCCCc
Q 042715 103 IELSSNLLEGRVPKSLASCTELKFLNLVSEG--IFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSL 169 (212)
Q Consensus 103 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L 169 (212)
+.+.. .+.......+..+++++.+.+..+- +....+.++ .++.+.+.. .+.......|.++++|
T Consensus 63 i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 63 ITFPN-NLKSIGDNAFSNCTNLKNIDIPSNITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETS-TT-EE-TTTTTT-TTECEEEETTT-BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccc-cccccccccccccccccccccCccccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77754 3332334455566777777765441 122445555 666666654 2222334455555444
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=6.2e-06 Score=60.75 Aligned_cols=84 Identities=20% Similarity=0.159 Sum_probs=53.1
Q ss_pred CCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec-ChhccCCCCccEEEe
Q 042715 97 EANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI-PQQFGELTSLEFFDV 174 (212)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l 174 (212)
+.+.++|++.+|.+.+ + .....|+.|+.|.++-|++.. .++..|++|++|+|..|.|.+.. -..+..+|+|+.|-|
T Consensus 18 l~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3456677777777763 2 245567777777777777754 56667777777777777775321 123456677777777
Q ss_pred eCCeeecC
Q 042715 175 SDNLVIGP 182 (212)
Q Consensus 175 ~~n~~~~~ 182 (212)
..|+=++.
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 77665543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.10 E-value=0.00041 Score=50.72 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=56.4
Q ss_pred ccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC--CC---CcccCCcccccEEEccCCeeeee-cChhccCCC
Q 042715 94 CKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG--IF---SSTLGNLIVLESLDLSNNKLSGQ-IPQQFGELT 167 (212)
Q Consensus 94 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~---~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~ 167 (212)
......++.+++.+..++ .. ..+-.+++|+.|.++.|. .. ......+++|+++++++|+|... --..+..++
T Consensus 39 ~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 334556666777666665 22 245567888999998883 32 23334568899999999988631 012345567
Q ss_pred CccEEEeeCCeeec
Q 042715 168 SLEFFDVSDNLVIG 181 (212)
Q Consensus 168 ~L~~L~l~~n~~~~ 181 (212)
+|..|++.+|..+.
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 78888988887765
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00023 Score=52.01 Aligned_cols=60 Identities=33% Similarity=0.362 Sum_probs=26.9
Q ss_pred CCCcccEEEccCC--cccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEccCCee
Q 042715 96 NEANLAMIELSSN--LLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKL 155 (212)
Q Consensus 96 ~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i 155 (212)
.+++|++|.++.| .+.+.++.....+++|++++++.|++.. ..+..+.+|..|++.+|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 3445555555555 3332333333334555555555555432 2223344455555555543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=7.4e-05 Score=55.26 Aligned_cols=97 Identities=27% Similarity=0.336 Sum_probs=66.0
Q ss_pred ccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEE
Q 042715 73 IGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESL 148 (212)
Q Consensus 73 l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L 148 (212)
+.+.+.|+.+++.++.. ..+..++.|..|.++-|+++ .. ..+..|.+|++|++..|.+.. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44556677777777643 34556788888888888887 33 346778888888888887744 456788888888
Q ss_pred EccCCeeeeecC-----hhccCCCCccEEE
Q 042715 149 DLSNNKLSGQIP-----QQFGELTSLEFFD 173 (212)
Q Consensus 149 ~l~~n~i~~~~~-----~~~~~~~~L~~L~ 173 (212)
.|..|.=.+.-+ ..+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888775433322 2445567777765
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.38 E-value=0.0026 Score=28.02 Aligned_cols=19 Identities=58% Similarity=0.889 Sum_probs=11.7
Q ss_pred ccEEEccCCeeeeecChhcc
Q 042715 145 LESLDLSNNKLSGQIPQQFG 164 (212)
Q Consensus 145 L~~L~l~~n~i~~~~~~~~~ 164 (212)
|++|++++|+++ .+|..+.
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 566777777766 5555444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.33 E-value=0.002 Score=28.40 Aligned_cols=12 Identities=42% Similarity=0.390 Sum_probs=5.8
Q ss_pred CceEEccCCeee
Q 042715 31 ISTLWLEKNQLT 42 (212)
Q Consensus 31 L~~L~l~~~~~~ 42 (212)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444555555444
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=0.0073 Score=42.78 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=55.0
Q ss_pred CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC----cccC-CcccccEEEccCC-eeeeecChhccCCCCccE
Q 042715 98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLG-NLIVLESLDLSNN-KLSGQIPQQFGELTSLEF 171 (212)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~-~~~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~ 171 (212)
..++.++-+++.+..+--..+..++.++.|.+.++..+. ..++ ..++|+.|++++| +|++..-..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 356777777776664433456677777778887776544 1122 4577888899887 677655667777888888
Q ss_pred EEeeCCe
Q 042715 172 FDVSDNL 178 (212)
Q Consensus 172 L~l~~n~ 178 (212)
|.+.+=+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8876554
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.15 E-value=0.029 Score=22.88 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=3.7
Q ss_pred ccEEEeeCCee
Q 042715 169 LEFFDVSDNLV 179 (212)
Q Consensus 169 L~~L~l~~n~~ 179 (212)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.75 E-value=0.073 Score=24.23 Aligned_cols=13 Identities=46% Similarity=0.567 Sum_probs=6.0
Q ss_pred CCceEEccCCeee
Q 042715 30 NISTLWLEKNQLT 42 (212)
Q Consensus 30 ~L~~L~l~~~~~~ 42 (212)
+|++|++.+|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.75 E-value=0.073 Score=24.23 Aligned_cols=13 Identities=46% Similarity=0.567 Sum_probs=6.0
Q ss_pred CCceEEccCCeee
Q 042715 30 NISTLWLEKNQLT 42 (212)
Q Consensus 30 ~L~~L~l~~~~~~ 42 (212)
+|++|++.+|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.72 E-value=0.037 Score=24.73 Aligned_cols=15 Identities=53% Similarity=0.727 Sum_probs=6.8
Q ss_pred ccccEEEccCCeeee
Q 042715 143 IVLESLDLSNNKLSG 157 (212)
Q Consensus 143 ~~L~~L~l~~n~i~~ 157 (212)
++|++|++++|+|.+
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.12 E-value=0.0062 Score=49.49 Aligned_cols=166 Identities=19% Similarity=0.121 Sum_probs=78.4
Q ss_pred ceeecEEEccCCccccc--cCccccccCCCceEEccCC-eeeecC----CCCCCCCCCccEEEccccc-ceecCCc----
Q 042715 4 CFDIIYIKLSGNQLTGP--IPYWLENLENISTLWLEKN-QLTGCI----PFEIGNLKNLSTLCLEHKQ-LTGRIPS---- 71 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~---- 71 (212)
++.|+.+.+..+.--.. .-.....+++|+.|+++++ ...... ......+++|+.++++++. ++.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45666666655432211 2233456777777777762 111011 1123445777777777766 4322221
Q ss_pred cccCCceEEcccce-eee-eCCCcccCCCcccEEEccCCccc-c-cCCcccccCCcccEEEccCCC--------------
Q 042715 72 EIGKLKPIAASSNN-FRG-SIPQTCKNEANLAMIELSSNLLE-G-RVPKSLASCTELKFLNLVSEG-------------- 133 (212)
Q Consensus 72 ~l~~l~~l~l~~n~-~~~-~~~~~~~~~~~L~~L~l~~~~~~-~-~~~~~~~~~~~L~~L~l~~n~-------------- 133 (212)
..++|++|.+..+. ++. .+......++.|++|+++++... + ........+++++.+.+....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 23456666655554 222 11122334566777777766432 1 111112234444443322221
Q ss_pred C------CCcccCCcccccEEEccCCeeeeec-ChhccCCCCc
Q 042715 134 I------FSSTLGNLIVLESLDLSNNKLSGQI-PQQFGELTSL 169 (212)
Q Consensus 134 ~------~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L 169 (212)
. .......+++++.+.+..+.+.+.. ...+.+++.+
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 1 1122346677777777776644222 2344555554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.92 E-value=0.0007 Score=54.90 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=7.2
Q ss_pred CCccEEEeeCCeee
Q 042715 167 TSLEFFDVSDNLVI 180 (212)
Q Consensus 167 ~~L~~L~l~~n~~~ 180 (212)
..++.++++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 262 ETLRVLDLSRNSIT 275 (478)
T ss_pred hhhhhhhhhcCCcc
Confidence 34455555555554
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.58 E-value=0.00075 Score=54.72 Aligned_cols=175 Identities=23% Similarity=0.223 Sum_probs=108.6
Q ss_pred ecEEEccCCccccc----cCccccccCCCceEEccCCeeeecC----CCCCCCC-CCccEEEcccccceecCC----ccc
Q 042715 7 IIYIKLSGNQLTGP----IPYWLENLENISTLWLEKNQLTGCI----PFEIGNL-KNLSTLCLEHKQLTGRIP----SEI 73 (212)
Q Consensus 7 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l-~~L~~L~l~~~~~~~~~~----~~l 73 (212)
+..+++.+|.+... +...+..++.|+.|++++|.+.... ...+... ..+++|.+..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56677777776633 3335566788888999998876221 1223333 457777777777763322 222
Q ss_pred ---cCCceEEcccceeee----eCCCc----ccCCCcccEEEccCCccccc----CCcccccCCc-ccEEEccCCCCCC-
Q 042715 74 ---GKLKPIAASSNNFRG----SIPQT----CKNEANLAMIELSSNLLEGR----VPKSLASCTE-LKFLNLVSEGIFS- 136 (212)
Q Consensus 74 ---~~l~~l~l~~n~~~~----~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~n~~~~- 136 (212)
..++++++..|.+.. .++.. +....++++|.+.+|.++.. ....+...+. +..+++..|..-+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 234566666666521 11222 22456788899988876621 1123344454 6668888887643
Q ss_pred ------cccCCc-ccccEEEccCCeeeee----cChhccCCCCccEEEeeCCeeec
Q 042715 137 ------STLGNL-IVLESLDLSNNKLSGQ----IPQQFGELTSLEFFDVSDNLVIG 181 (212)
Q Consensus 137 ------~~~~~~-~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~~ 181 (212)
..+..+ ..++.++++.|.|.+. ....+..++.++.+.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 333444 5678999999998753 34556677889999999998753
No 77
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=89.18 E-value=0.18 Score=41.24 Aligned_cols=61 Identities=26% Similarity=0.278 Sum_probs=40.1
Q ss_pred CcccccEEEccCCeeeee--cChhccCCCCccEEEeeCC--eeec--CCCCCcccccccccccccCCC
Q 042715 141 NLIVLESLDLSNNKLSGQ--IPQQFGELTSLEFFDVSDN--LVIG--PIPQGKQFNTFETSSFDGNPG 202 (212)
Q Consensus 141 ~~~~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n--~~~~--~~~~~~~~~~l~~l~l~~n~~ 202 (212)
+.+.+..++|++|++... +.......|++..|+|++| .+.. .++. .+...++++.+.|||.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K-~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK-LKGLPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh-hcCCCHHHeeecCCcc
Confidence 566778888888877532 2333345688888888888 4432 2222 2556788888888884
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.00 E-value=0.0093 Score=43.38 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=52.8
Q ss_pred cccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCcccccEEEccCCeeeeecChhccCCCCcc
Q 042715 93 TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLE 170 (212)
Q Consensus 93 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 170 (212)
++......+.|+++.|.+. .....+..+..+..++++.|.+ .+..+.....++++++..|+.. ..|..+...++++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 3344456666777776655 3444555566666666666644 4555555556666666666665 5666677777777
Q ss_pred EEEeeCCee
Q 042715 171 FFDVSDNLV 179 (212)
Q Consensus 171 ~L~l~~n~~ 179 (212)
++++.+|.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 777776654
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.08 E-value=0.027 Score=41.06 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=46.5
Q ss_pred cCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCccccccccccc
Q 042715 120 SCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSF 197 (212)
Q Consensus 120 ~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l 197 (212)
.....+.|+++.|+.. ...|+-++.++.++++.|.+. -.|..+.....+..+++..|..+..+....+.++++.+..
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 3345555666666542 244445555666666666665 5565566666666666666666544444455666666666
Q ss_pred ccCC
Q 042715 198 DGNP 201 (212)
Q Consensus 198 ~~n~ 201 (212)
.++|
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5555
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.31 E-value=0.12 Score=36.93 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=19.8
Q ss_pred CcccEEEccCC-cccccCCcccccCCcccEEEccC
Q 042715 98 ANLAMIELSSN-LLEGRVPKSLASCTELKFLNLVS 131 (212)
Q Consensus 98 ~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~ 131 (212)
++|+.|++++| .|++.--..+..+++|+.|++.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 56777777766 34433333455566666666555
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.07 E-value=1.1 Score=20.49 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=9.2
Q ss_pred CCccEEEeeCCeee
Q 042715 167 TSLEFFDVSDNLVI 180 (212)
Q Consensus 167 ~~L~~L~l~~n~~~ 180 (212)
.+|+.|++++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45667777777664
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=80.48 E-value=0.22 Score=40.52 Aligned_cols=38 Identities=29% Similarity=0.218 Sum_probs=17.3
Q ss_pred cccccEEEccCCe-eeee-cChhccCCCCccEEEeeCCee
Q 042715 142 LIVLESLDLSNNK-LSGQ-IPQQFGELTSLEFFDVSDNLV 179 (212)
Q Consensus 142 ~~~L~~L~l~~n~-i~~~-~~~~~~~~~~L~~L~l~~n~~ 179 (212)
+++|+.|.+.++. +++. +......++.|++|+++++..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555555544443 3322 122233455555555555543
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.19 E-value=1.1 Score=20.71 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=10.6
Q ss_pred CCccEEEeeCCeee
Q 042715 167 TSLEFFDVSDNLVI 180 (212)
Q Consensus 167 ~~L~~L~l~~n~~~ 180 (212)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888774
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.95 E-value=1.7 Score=19.90 Aligned_cols=17 Identities=41% Similarity=0.813 Sum_probs=8.8
Q ss_pred cccEEEccCCeeeeecCh
Q 042715 144 VLESLDLSNNKLSGQIPQ 161 (212)
Q Consensus 144 ~L~~L~l~~n~i~~~~~~ 161 (212)
+|+.|++++|+++ ..|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 3555555555555 4443
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=70.67 E-value=1.3 Score=35.43 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=81.7
Q ss_pred cCCCceEEccCCe-eeecC-CCCCCCCCCccEEEccccccee-cCC----ccccCCceEEccccee-eeeCCCcc-cCCC
Q 042715 28 LENISTLWLEKNQ-LTGCI-PFEIGNLKNLSTLCLEHKQLTG-RIP----SEIGKLKPIAASSNNF-RGSIPQTC-KNEA 98 (212)
Q Consensus 28 l~~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~l~~~~~~~-~~~----~~l~~l~~l~l~~n~~-~~~~~~~~-~~~~ 98 (212)
++-+..+++.++. ++... ...-..+.+|+.++.+++...+ .+. ..-++|+.+.+..+.- +..-...+ .+..
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 4555666665553 22110 1111345677777777664321 111 2224566666666552 21111111 2345
Q ss_pred cccEEEccCCccc--ccCCcccccCCcccEEEccCCCCCC--------cccCCcccccEEEccCCe-eeeecChhccCCC
Q 042715 99 NLAMIELSSNLLE--GRVPKSLASCTELKFLNLVSEGIFS--------STLGNLIVLESLDLSNNK-LSGQIPQQFGELT 167 (212)
Q Consensus 99 ~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~--------~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~ 167 (212)
.|+.+++..+... +.+...-.+++.|+.+.++.+..+. ....+...++.+-++++. +++..-+.+..++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 6777777666432 2233334566778888887664432 222356677778888775 4444455667788
Q ss_pred CccEEEeeCCee
Q 042715 168 SLEFFDVSDNLV 179 (212)
Q Consensus 168 ~L~~L~l~~n~~ 179 (212)
+|+++++-+++-
T Consensus 427 ~Leri~l~~~q~ 438 (483)
T KOG4341|consen 427 NLERIELIDCQD 438 (483)
T ss_pred ccceeeeechhh
Confidence 888888887754
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=70.19 E-value=1.4 Score=35.25 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=87.4
Q ss_pred CCCCccEEEcccccc-eec----CCccccCCceEEccccee-eeeCCCc-ccCCCcccEEEccCCc-cccc-CCcccccC
Q 042715 51 NLKNLSTLCLEHKQL-TGR----IPSEIGKLKPIAASSNNF-RGSIPQT-CKNEANLAMIELSSNL-LEGR-VPKSLASC 121 (212)
Q Consensus 51 ~l~~L~~L~l~~~~~-~~~----~~~~l~~l~~l~l~~n~~-~~~~~~~-~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~ 121 (212)
+++.+..+++..|.. +.. +......++.+..+++.. ....-.. -.+..+|+.+.+.++. ++.. +-.--.++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 455566677656532 211 111233557777666542 2111112 2355789999998885 3311 11122466
Q ss_pred CcccEEEccCCCCCC-----cccCCcccccEEEccCCe-eeeec----ChhccCCCCccEEEeeCCeeec--CCCCCccc
Q 042715 122 TELKFLNLVSEGIFS-----STLGNLIVLESLDLSNNK-LSGQI----PQQFGELTSLEFFDVSDNLVIG--PIPQGKQF 189 (212)
Q Consensus 122 ~~L~~L~l~~n~~~~-----~~~~~~~~L~~L~l~~n~-i~~~~----~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~ 189 (212)
+.|+.+++..+.... ..-.+++.|+.+.++++. +++.. ...-.....+..+.|++++... .+......
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 788888888876533 223478899999999885 44331 2222456778899999997642 22223345
Q ss_pred ccccccccccCCCcc
Q 042715 190 NTFETSSFDGNPGLC 204 (212)
Q Consensus 190 ~~l~~l~l~~n~~~~ 204 (212)
+.++.+.+.++..+.
T Consensus 426 ~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 426 RNLERIELIDCQDVT 440 (483)
T ss_pred cccceeeeechhhhh
Confidence 566666666655443
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=66.44 E-value=4 Score=18.30 Aligned_cols=11 Identities=27% Similarity=0.181 Sum_probs=5.4
Q ss_pred CCCceEEccCC
Q 042715 29 ENISTLWLEKN 39 (212)
Q Consensus 29 ~~L~~L~l~~~ 39 (212)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555544
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.92 E-value=3 Score=34.59 Aligned_cols=59 Identities=25% Similarity=0.269 Sum_probs=31.3
Q ss_pred CCcccEEEccCCCCCC-----cccCCcccccEEEccCC--eeeeecChhccC--CCCccEEEeeCCeeec
Q 042715 121 CTELKFLNLVSEGIFS-----STLGNLIVLESLDLSNN--KLSGQIPQQFGE--LTSLEFFDVSDNLVIG 181 (212)
Q Consensus 121 ~~~L~~L~l~~n~~~~-----~~~~~~~~L~~L~l~~n--~i~~~~~~~~~~--~~~L~~L~l~~n~~~~ 181 (212)
.+.+..+.+++|++.. .-....|+|..|+|++| .+.. ..++.+ ...|+.|-+.+|+++.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 3556666667766532 22234566777777777 3331 111222 2336667777777754
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=51.64 E-value=9.4 Score=38.13 Aligned_cols=30 Identities=33% Similarity=0.317 Sum_probs=15.0
Q ss_pred ccCCeeeeecChhccCCCCccEEEeeCCee
Q 042715 150 LSNNKLSGQIPQQFGELTSLEFFDVSDNLV 179 (212)
Q Consensus 150 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~ 179 (212)
|++|+|....+..|..+++|+.|+|++|++
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 445555433344444555555555555544
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.55 E-value=17 Score=36.52 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=26.3
Q ss_pred EccCCccccccCccccccCCCceEEccCCeee
Q 042715 11 KLSGNQLTGPIPYWLENLENISTLWLEKNQLT 42 (212)
Q Consensus 11 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 42 (212)
||++|+|....++.|..+++|++|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888666778888999999999998755
No 91
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=27.45 E-value=25 Score=15.89 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=5.2
Q ss_pred CCceeecEEEcc
Q 042715 2 SLCFDIIYIKLS 13 (212)
Q Consensus 2 ~~l~~L~~L~l~ 13 (212)
.+|.++..|+++
T Consensus 3 ~~~~~~~~ldls 14 (26)
T TIGR02167 3 SGCSSLTSLDVS 14 (26)
T ss_pred Cccccccccccc
Confidence 344444444443
No 92
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=25.26 E-value=29 Score=15.85 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=9.2
Q ss_pred ccccCCCceEEccC
Q 042715 25 LENLENISTLWLEK 38 (212)
Q Consensus 25 ~~~l~~L~~L~l~~ 38 (212)
+..+|+|+.||...
T Consensus 9 i~~LPqL~~LD~~~ 22 (26)
T smart00446 9 IRLLPQLRKLDXXX 22 (26)
T ss_pred HHHCCccceecccc
Confidence 45677777777643
Done!