Query 042715
Match_columns 212
No_of_seqs 151 out of 2363
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 15:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-32 3.9E-37 209.7 16.4 207 2-209 98-310 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-30 5.6E-35 219.0 18.1 208 2-209 463-746 (768)
3 1ozn_A Reticulon 4 receptor; N 100.0 3.6E-29 1.2E-33 188.0 15.3 205 4-208 31-243 (285)
4 3zyj_A Leucine-rich repeat-con 100.0 1.8E-28 6.2E-33 194.7 18.9 206 1-208 84-297 (440)
5 3zyi_A Leucine-rich repeat-con 100.0 3.3E-28 1.1E-32 193.8 18.4 201 6-208 76-308 (452)
6 3v47_A TOLL-like receptor 5B a 100.0 2.1E-28 7.1E-33 194.9 15.5 134 75-208 276-413 (455)
7 1p9a_G Platelet glycoprotein I 100.0 3.5E-28 1.2E-32 183.0 15.2 203 2-208 7-213 (290)
8 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-28 8.9E-33 185.7 13.6 198 4-203 75-281 (313)
9 2z66_A Variable lymphocyte rec 100.0 6.7E-28 2.3E-32 182.8 14.1 206 2-208 49-266 (306)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-27 5.5E-32 196.0 16.6 206 2-208 347-563 (606)
11 2o6q_A Variable lymphocyte rec 100.0 9E-27 3.1E-31 173.7 18.1 199 6-207 17-222 (270)
12 2z62_A TOLL-like receptor 4, v 100.0 4.9E-27 1.7E-31 175.6 16.1 202 5-207 28-241 (276)
13 3rgz_A Protein brassinosteroid 99.9 2.3E-27 7.8E-32 199.9 15.0 202 4-205 441-719 (768)
14 2z80_A TOLL-like receptor 2, v 99.9 2.8E-28 9.5E-33 188.4 8.5 204 3-207 74-318 (353)
15 4fcg_A Uncharacterized protein 99.9 2.3E-27 7.9E-32 181.5 13.2 197 5-205 81-292 (328)
16 3t6q_A CD180 antigen; protein- 99.9 5E-27 1.7E-31 193.1 15.3 206 2-208 347-565 (606)
17 4fcg_A Uncharacterized protein 99.9 8.1E-27 2.8E-31 178.5 14.3 197 2-202 101-313 (328)
18 2id5_A Lingo-1, leucine rich r 99.9 7.5E-27 2.6E-31 187.1 14.2 208 1-208 76-338 (477)
19 1ozn_A Reticulon 4 receptor; N 99.9 8.3E-27 2.8E-31 175.1 12.9 207 1-207 52-265 (285)
20 3oja_A Leucine-rich immune mol 99.9 5.6E-27 1.9E-31 188.1 11.9 202 3-207 32-254 (487)
21 1ziw_A TOLL-like receptor 3; i 99.9 4.4E-26 1.5E-30 189.8 16.6 206 3-208 403-627 (680)
22 3o53_A Protein LRIM1, AGAP0063 99.9 7.6E-27 2.6E-31 177.9 10.1 201 3-206 32-253 (317)
23 3o6n_A APL1; leucine-rich repe 99.9 3.8E-26 1.3E-30 178.7 13.4 203 2-207 90-356 (390)
24 3oja_B Anopheles plasmodium-re 99.9 4.3E-26 1.5E-30 187.3 13.4 202 2-206 96-361 (597)
25 3zyi_A Leucine-rich repeat-con 99.9 3.8E-25 1.3E-29 176.1 18.3 196 7-205 56-281 (452)
26 1xku_A Decorin; proteoglycan, 99.9 5.2E-25 1.8E-29 168.6 18.1 199 5-204 52-277 (330)
27 3v47_A TOLL-like receptor 5B a 99.9 3.2E-25 1.1E-29 176.6 16.3 104 103-206 280-387 (455)
28 3o6n_A APL1; leucine-rich repe 99.9 4.3E-25 1.5E-29 172.7 15.7 197 3-203 67-308 (390)
29 3zyj_A Leucine-rich repeat-con 99.9 1.4E-24 4.9E-29 172.3 17.6 202 5-206 64-271 (440)
30 1xku_A Decorin; proteoglycan, 99.9 3.4E-24 1.2E-28 164.1 18.3 198 1-205 72-308 (330)
31 3oja_B Anopheles plasmodium-re 99.9 7.6E-25 2.6E-29 179.9 15.3 197 3-203 73-314 (597)
32 2ft3_A Biglycan; proteoglycan, 99.9 9.6E-25 3.3E-29 167.3 14.9 197 5-203 54-307 (332)
33 2z63_A TOLL-like receptor 4, v 99.9 7.5E-25 2.6E-29 178.8 14.7 203 4-208 324-536 (570)
34 2id5_A Lingo-1, leucine rich r 99.9 1.7E-24 5.9E-29 173.4 15.3 202 2-203 53-309 (477)
35 2z66_A Variable lymphocyte rec 99.9 1.7E-24 5.8E-29 164.1 14.4 204 3-207 76-291 (306)
36 3j0a_A TOLL-like receptor 5; m 99.9 5.5E-25 1.9E-29 187.1 12.4 204 2-209 287-566 (844)
37 1wwl_A Monocyte differentiatio 99.9 1.2E-25 4E-30 171.0 7.1 197 3-204 93-310 (312)
38 4eco_A Uncharacterized protein 99.9 4.1E-25 1.4E-29 182.6 10.3 181 1-184 202-419 (636)
39 3rfs_A Internalin B, repeat mo 99.9 1.5E-24 5.1E-29 161.9 11.8 179 26-207 38-222 (272)
40 3m19_A Variable lymphocyte rec 99.9 1.2E-23 4.1E-28 155.2 16.1 175 5-182 14-194 (251)
41 3t6q_A CD180 antigen; protein- 99.9 8.4E-24 2.9E-28 173.9 16.6 201 2-203 298-536 (606)
42 2o6q_A Variable lymphocyte rec 99.9 1.5E-23 5.3E-28 156.2 16.5 179 5-183 37-221 (270)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.8E-24 9.5E-29 175.4 13.6 158 50-208 350-515 (562)
44 2ft3_A Biglycan; proteoglycan, 99.9 1E-23 3.4E-28 161.6 15.3 201 1-201 74-331 (332)
45 4eco_A Uncharacterized protein 99.9 4.3E-24 1.5E-28 176.6 13.7 57 144-201 489-547 (636)
46 2xwt_C Thyrotropin receptor; s 99.9 1.1E-23 3.9E-28 154.2 14.0 192 5-201 31-237 (239)
47 2z7x_B TOLL-like receptor 1, v 99.9 4.3E-24 1.5E-28 172.8 12.5 158 50-208 321-486 (520)
48 3o53_A Protein LRIM1, AGAP0063 99.9 4.3E-24 1.5E-28 162.7 11.3 197 6-204 11-228 (317)
49 4g8a_A TOLL-like receptor 4; l 99.9 4.6E-23 1.6E-27 169.9 17.8 205 3-208 369-585 (635)
50 2z81_A CD282 antigen, TOLL-lik 99.9 7E-24 2.4E-28 172.5 11.7 195 5-207 310-514 (549)
51 2z62_A TOLL-like receptor 4, v 99.9 2.3E-23 7.8E-28 155.7 13.5 187 1-187 48-244 (276)
52 4ecn_A Leucine-rich repeat pro 99.9 3.5E-24 1.2E-28 181.3 10.0 199 1-203 444-686 (876)
53 1h6u_A Internalin H; cell adhe 99.9 1.7E-23 5.9E-28 158.7 12.5 190 3-204 39-231 (308)
54 4fmz_A Internalin; leucine ric 99.9 1.8E-23 6.3E-28 160.9 12.4 190 4-202 154-345 (347)
55 2z80_A TOLL-like receptor 2, v 99.9 2.1E-23 7.2E-28 161.1 12.2 198 5-203 52-290 (353)
56 3rfs_A Internalin B, repeat mo 99.9 1.3E-22 4.6E-27 151.2 15.7 179 3-185 39-223 (272)
57 3j0a_A TOLL-like receptor 5; m 99.9 2.6E-22 8.8E-27 170.8 18.2 111 1-111 44-161 (844)
58 1ziw_A TOLL-like receptor 3; i 99.9 3.5E-22 1.2E-26 166.3 17.6 199 6-204 382-598 (680)
59 4ecn_A Leucine-rich repeat pro 99.9 2E-23 6.7E-28 176.7 9.9 181 21-204 440-658 (876)
60 2z63_A TOLL-like receptor 4, v 99.9 1.1E-22 3.7E-27 166.1 13.6 204 2-207 344-560 (570)
61 4glp_A Monocyte differentiatio 99.9 2.9E-23 9.8E-28 157.7 8.7 195 4-203 90-307 (310)
62 1p9a_G Platelet glycoprotein I 99.9 5.7E-22 1.9E-26 149.1 15.6 172 5-180 31-208 (290)
63 1wwl_A Monocyte differentiatio 99.9 7E-23 2.4E-27 155.6 10.8 175 2-181 118-310 (312)
64 3vq2_A TLR4, TOLL-like recepto 99.9 3.8E-22 1.3E-26 164.1 15.7 182 2-185 373-563 (606)
65 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-21 3.7E-26 161.7 17.4 67 139-205 490-557 (635)
66 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-22 6.1E-27 163.3 11.7 81 2-85 42-126 (520)
67 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.5E-22 2.9E-26 160.8 14.9 107 5-111 52-159 (562)
68 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-21 6.6E-26 154.9 16.1 186 3-202 40-245 (457)
69 3m19_A Variable lymphocyte rec 99.9 1.1E-21 3.6E-26 144.7 13.5 154 5-158 35-194 (251)
70 2z81_A CD282 antigen, TOLL-lik 99.9 4.2E-22 1.4E-26 162.0 12.1 196 5-201 26-234 (549)
71 2v9t_B SLIT homolog 2 protein 99.9 1.2E-21 4.2E-26 141.6 12.9 134 75-208 33-170 (220)
72 3oja_A Leucine-rich immune mol 99.9 1.1E-22 3.7E-27 163.3 8.1 203 1-208 54-287 (487)
73 1o6v_A Internalin A; bacterial 99.9 6.5E-22 2.2E-26 158.1 12.4 194 2-204 174-389 (466)
74 4fmz_A Internalin; leucine ric 99.9 8.2E-22 2.8E-26 151.7 11.9 200 1-207 106-328 (347)
75 3bz5_A Internalin-J, INLJ; leu 99.9 6.9E-21 2.4E-25 151.7 17.5 168 3-184 62-250 (457)
76 1h6u_A Internalin H; cell adhe 99.9 1.6E-21 5.6E-26 147.8 13.0 171 2-183 60-233 (308)
77 1o6v_A Internalin A; bacterial 99.9 2.3E-21 7.7E-26 154.9 13.3 188 1-200 152-341 (466)
78 2xot_A Amphoterin-induced prot 99.9 2.1E-21 7.1E-26 150.4 12.3 135 74-208 64-207 (361)
79 2v70_A SLIT-2, SLIT homolog 2 99.9 4.1E-21 1.4E-25 138.9 12.7 153 32-207 14-170 (220)
80 4glp_A Monocyte differentiatio 99.9 7.1E-22 2.4E-26 150.0 8.4 177 2-181 114-308 (310)
81 2xwt_C Thyrotropin receptor; s 99.9 6.5E-21 2.2E-25 139.5 12.9 173 1-178 51-237 (239)
82 3e6j_A Variable lymphocyte rec 99.8 2.2E-20 7.5E-25 135.9 13.3 151 55-207 21-176 (229)
83 1h6t_A Internalin B; cell adhe 99.8 4.2E-20 1.4E-24 139.0 14.2 170 3-183 44-216 (291)
84 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-19 3.7E-24 149.2 16.0 77 122-203 221-297 (622)
85 2v9t_B SLIT homolog 2 protein 99.8 9E-20 3.1E-24 131.8 12.9 149 8-180 14-165 (220)
86 2o6s_A Variable lymphocyte rec 99.8 2E-20 6.7E-25 134.1 9.1 170 8-187 10-185 (208)
87 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.9E-24 147.6 14.5 177 5-204 59-244 (571)
88 2v70_A SLIT-2, SLIT homolog 2 99.8 7.7E-20 2.6E-24 132.2 12.1 151 8-182 14-168 (220)
89 4ezg_A Putative uncharacterize 99.8 6.5E-20 2.2E-24 130.4 10.9 151 25-180 40-194 (197)
90 2ca6_A RAN GTPase-activating p 99.8 1.5E-22 5.2E-27 158.1 -3.2 204 3-206 58-319 (386)
91 1jl5_A Outer protein YOPM; leu 99.8 3.7E-20 1.3E-24 147.4 9.7 187 4-203 10-228 (454)
92 1jl5_A Outer protein YOPM; leu 99.8 5.8E-19 2E-23 140.5 16.1 186 3-204 193-410 (454)
93 2o6s_A Variable lymphocyte rec 99.8 5.1E-19 1.7E-23 126.7 14.2 149 32-183 10-164 (208)
94 1m9s_A Internalin B; cell inva 99.8 4.2E-19 1.4E-23 145.5 14.4 171 3-184 41-214 (605)
95 1xeu_A Internalin C; cellular 99.8 3.6E-20 1.2E-24 137.4 7.2 169 4-183 18-188 (263)
96 3e6j_A Variable lymphocyte rec 99.8 1.2E-18 4.1E-23 126.7 14.8 146 7-156 21-172 (229)
97 1h6t_A Internalin B; cell adhe 99.8 1.6E-19 5.5E-24 135.8 10.1 184 11-205 30-215 (291)
98 2ast_B S-phase kinase-associat 99.8 6.9E-21 2.4E-25 145.9 2.6 174 4-177 92-282 (336)
99 2ast_B S-phase kinase-associat 99.8 2.4E-21 8.3E-26 148.4 -0.3 195 5-200 70-282 (336)
100 3goz_A Leucine-rich repeat-con 99.8 1.6E-21 5.5E-26 151.1 -2.7 62 5-66 22-93 (362)
101 1xeu_A Internalin C; cellular 99.8 7.4E-19 2.5E-23 130.3 11.4 148 3-158 39-187 (263)
102 2ca6_A RAN GTPase-activating p 99.8 1.7E-21 5.8E-26 152.1 -3.1 201 3-203 30-287 (386)
103 4ay9_X Follicle-stimulating ho 99.8 4.1E-18 1.4E-22 131.4 15.1 194 5-200 30-233 (350)
104 1m9s_A Internalin B; cell inva 99.8 1.9E-19 6.5E-24 147.5 8.0 187 8-205 24-212 (605)
105 2xot_A Amphoterin-induced prot 99.8 8.3E-19 2.8E-23 135.8 11.2 170 8-180 21-202 (361)
106 4ezg_A Putative uncharacterize 99.8 4.6E-19 1.6E-23 126.0 8.6 147 50-202 41-193 (197)
107 4ay9_X Follicle-stimulating ho 99.8 1.5E-18 5.2E-23 133.8 11.5 199 1-204 50-259 (350)
108 1dce_A Protein (RAB geranylger 99.8 9.4E-22 3.2E-26 160.2 -7.0 190 2-196 346-566 (567)
109 3cvr_A Invasion plasmid antige 99.8 3.2E-18 1.1E-22 139.2 12.8 161 5-185 80-248 (571)
110 3g06_A SSPH2 (leucine-rich rep 99.8 2E-17 7E-22 135.8 17.7 54 143-203 221-274 (622)
111 3goz_A Leucine-rich repeat-con 99.8 1.5E-20 5.1E-25 145.6 -2.6 196 9-204 2-239 (362)
112 2wfh_A SLIT homolog 2 protein 99.8 5.4E-18 1.8E-22 120.0 10.7 110 98-208 31-144 (193)
113 1w8a_A SLIT protein; signaling 99.8 5E-18 1.7E-22 120.1 10.5 128 32-183 11-142 (192)
114 1w8a_A SLIT protein; signaling 99.8 8.3E-18 2.8E-22 119.0 10.8 128 78-208 12-144 (192)
115 1z7x_W Ribonuclease inhibitor; 99.7 1.8E-20 6.3E-25 149.3 -6.2 86 118-203 223-326 (461)
116 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-20 3.6E-25 150.6 -8.3 38 5-42 142-183 (461)
117 2ell_A Acidic leucine-rich nuc 99.7 2.8E-17 9.4E-22 113.8 8.9 133 28-183 23-163 (168)
118 2je0_A Acidic leucine-rich nuc 99.7 8.7E-17 3E-21 109.1 8.1 126 28-176 16-149 (149)
119 2ell_A Acidic leucine-rich nuc 99.7 1.1E-16 3.8E-21 110.7 8.6 131 3-156 22-160 (168)
120 2o6r_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 109.3 10.4 129 55-184 9-141 (177)
121 2wfh_A SLIT homolog 2 protein 99.7 3E-16 1E-20 111.0 9.3 125 32-181 13-140 (193)
122 2je0_A Acidic leucine-rich nuc 99.7 2.2E-16 7.5E-21 107.1 7.6 126 3-130 15-148 (149)
123 4b8c_D Glucose-repressible alc 99.6 1.7E-17 5.7E-22 139.0 1.5 155 5-164 173-337 (727)
124 3sb4_A Hypothetical leucine ri 99.6 2.9E-15 1E-19 114.4 12.6 191 4-196 48-327 (329)
125 2o6r_A Variable lymphocyte rec 99.6 2.6E-15 9E-20 104.6 10.9 110 98-207 28-141 (177)
126 4b8c_D Glucose-repressible alc 99.6 1.5E-16 5E-21 133.3 3.8 155 28-186 172-335 (727)
127 1a9n_A U2A', U2A'; complex (nu 99.6 1.5E-15 5.1E-20 105.8 7.0 130 25-180 15-153 (176)
128 1a9n_A U2A', U2A'; complex (nu 99.6 5.2E-15 1.8E-19 103.1 8.8 126 2-132 16-150 (176)
129 3g39_A Variable lymphocyte rec 99.6 6.6E-15 2.3E-19 102.0 9.3 85 122-206 30-118 (170)
130 1dce_A Protein (RAB geranylger 99.6 8.5E-18 2.9E-22 137.0 -8.1 177 26-208 346-551 (567)
131 2r9u_A Variable lymphocyte rec 99.6 1.8E-14 6.2E-19 100.2 9.4 101 77-180 15-118 (174)
132 1ds9_A Outer arm dynein; leuci 99.6 1.1E-17 3.7E-22 118.9 -7.3 128 26-157 15-154 (198)
133 1ds9_A Outer arm dynein; leuci 99.6 7.3E-18 2.5E-22 119.8 -8.5 126 5-135 18-153 (198)
134 3sb4_A Hypothetical leucine ri 99.5 7.8E-14 2.7E-18 106.5 10.0 195 4-202 24-309 (329)
135 3ogk_B Coronatine-insensitive 99.5 7.9E-16 2.7E-20 126.1 -3.2 195 3-198 110-350 (592)
136 2ifg_A High affinity nerve gro 99.5 1.6E-13 5.4E-18 105.5 9.2 105 102-208 12-121 (347)
137 4fdw_A Leucine rich hypothetic 99.5 3.2E-12 1.1E-16 100.1 15.7 163 6-175 158-331 (401)
138 3g39_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 94.3 7.9 86 98-183 30-118 (170)
139 2r9u_A Variable lymphocyte rec 99.4 4.1E-13 1.4E-17 93.2 8.0 100 56-156 15-118 (174)
140 4fdw_A Leucine rich hypothetic 99.4 1.1E-11 3.8E-16 97.0 16.8 177 1-183 176-361 (401)
141 3ogk_B Coronatine-insensitive 99.4 6.4E-15 2.2E-19 120.7 -2.6 35 165-199 376-412 (592)
142 3un9_A NLR family member X1; l 99.3 1.4E-14 4.9E-19 112.3 -5.0 154 28-181 71-253 (372)
143 2p1m_B Transport inhibitor res 99.3 4.5E-15 1.5E-19 121.7 -8.6 129 73-202 371-518 (594)
144 3un9_A NLR family member X1; l 99.3 7.6E-15 2.6E-19 113.8 -7.2 176 4-179 71-282 (372)
145 2p1m_B Transport inhibitor res 99.3 2.7E-14 9.1E-19 117.1 -4.6 194 4-199 104-347 (594)
146 2ifg_A High affinity nerve gro 99.2 1.7E-11 5.9E-16 94.1 7.6 86 94-180 27-116 (347)
147 2ra8_A Uncharacterized protein 98.9 6.2E-10 2.1E-14 85.8 4.3 156 25-180 135-320 (362)
148 4fs7_A Uncharacterized protein 98.9 5.4E-08 1.8E-12 76.0 15.0 195 1-200 158-376 (394)
149 2ra8_A Uncharacterized protein 98.9 6.1E-10 2.1E-14 85.8 2.9 171 3-178 137-341 (362)
150 4gt6_A Cell surface protein; l 98.7 6.1E-07 2.1E-11 70.0 15.0 103 95-200 262-367 (394)
151 4fs7_A Uncharacterized protein 98.6 6.1E-07 2.1E-11 70.0 12.3 171 1-177 181-376 (394)
152 3e4g_A ATP synthase subunit S, 98.5 9.7E-08 3.3E-12 65.6 3.6 81 98-178 61-150 (176)
153 1io0_A Tropomodulin; LRR prote 98.5 1.7E-08 6E-13 70.5 -0.1 116 48-180 31-164 (185)
154 1io0_A Tropomodulin; LRR prote 98.5 5.1E-09 1.8E-13 73.2 -2.9 119 21-156 28-164 (185)
155 4h09_A Hypothetical leucine ri 98.3 3.5E-05 1.2E-09 59.6 14.1 149 25-177 190-343 (379)
156 4gt6_A Cell surface protein; l 98.3 5.2E-06 1.8E-10 64.7 9.3 145 7-179 244-390 (394)
157 3rw6_A Nuclear RNA export fact 98.2 6E-07 2E-11 66.1 3.2 79 26-104 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.2 1E-06 3.5E-11 64.9 4.1 64 119-184 167-237 (267)
159 3rfe_A Platelet glycoprotein I 98.2 1.3E-06 4.5E-11 57.2 3.8 60 147-208 12-73 (130)
160 4h09_A Hypothetical leucine ri 98.1 0.00014 4.7E-09 56.2 14.4 189 6-198 136-341 (379)
161 3e4g_A ATP synthase subunit S, 98.0 7.7E-07 2.6E-11 61.2 0.6 91 28-135 60-152 (176)
162 3rfe_A Platelet glycoprotein I 97.3 0.0004 1.4E-08 45.2 5.2 36 144-179 32-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 8.2E-05 2.8E-09 52.0 0.6 86 94-179 66-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00084 2.9E-08 46.9 1.8 83 95-177 38-136 (197)
165 2lz0_A Uncharacterized protein 84.5 1.5 5.3E-05 26.6 4.1 48 15-63 6-53 (100)
166 2lz0_A Uncharacterized protein 80.0 2.9 0.0001 25.4 4.2 39 1-40 16-54 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-32 Score=209.71 Aligned_cols=207 Identities=31% Similarity=0.550 Sum_probs=159.0
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcccc----CCc
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG----KLK 77 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~----~l~ 77 (212)
+++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. +|+
T Consensus 98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 3456666666666666656666666666666666666666666666666666777777777666655554432 456
Q ss_pred eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC--cccCCcccccEEEccCCee
Q 042715 78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--STLGNLIVLESLDLSNNKL 155 (212)
Q Consensus 78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~L~~L~l~~n~i 155 (212)
+|++++|.+.+..|..+..+. |++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+++|++|++++|.+
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcc
Confidence 677777777766666666665 7777777777776677777788888888888887642 4467789999999999999
Q ss_pred eeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCCCC
Q 042715 156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLP 209 (212)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 209 (212)
.+.+|..+..+++|++|++++|++++.+|....+++++.+++.+||+.||.|++
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC
Confidence 989999999999999999999999999999889999999999999999998875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.6e-30 Score=218.97 Aligned_cols=208 Identities=41% Similarity=0.631 Sum_probs=175.2
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCce
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKP 78 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~ 78 (212)
+.+++|++|++++|.+.+..|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|..+ ++|++
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 346677777777777777777777778888888888888777777777788888888888888877777554 45678
Q ss_pred EEcccceeeeeCCC------------------------------------------------------------------
Q 042715 79 IAASSNNFRGSIPQ------------------------------------------------------------------ 92 (212)
Q Consensus 79 l~l~~n~~~~~~~~------------------------------------------------------------------ 92 (212)
|++++|.+++.+|.
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 88888877655443
Q ss_pred ----cccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCcccccEEEccCCeeeeecChhccC
Q 042715 93 ----TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSGQIPQQFGE 165 (212)
Q Consensus 93 ----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 165 (212)
.++.++++++|++++|.+++.+|..++.++.|+.|++++|.+ .+..++.++.|+.|+|++|++++.+|..+..
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 233456788999999999999999999999999999999987 4678899999999999999999999999999
Q ss_pred CCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCCCC
Q 042715 166 LTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLP 209 (212)
Q Consensus 166 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 209 (212)
+++|++|++++|++.|.+|....+..+....+.|||.+||.|++
T Consensus 703 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~ 746 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 746 (768)
T ss_dssp CCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC
T ss_pred CCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc
Confidence 99999999999999999999999999999999999999998875
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.6e-29 Score=188.01 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=181.0
Q ss_pred ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccc-ceecCCc---cccCCceE
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQ-LTGRIPS---EIGKLKPI 79 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~---~l~~l~~l 79 (212)
.++|++|+++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+. .+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4689999999999997777789999999999999999998889999999999999999997 6633343 45678999
Q ss_pred EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeee
Q 042715 80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLS 156 (212)
Q Consensus 80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~ 156 (212)
++++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.. ..+..+++|++|++++|.+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 999999987777888999999999999999996666678899999999999998743 45788999999999999999
Q ss_pred eecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCCC
Q 042715 157 GQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
+..|..+..+++|++|++++|.+.+.++. ...+++++.+++.+||+.|+|++
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 88899999999999999999999876654 44789999999999999999975
No 4
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=194.67 Aligned_cols=206 Identities=18% Similarity=0.178 Sum_probs=160.7
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCc
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLK 77 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~ 77 (212)
|+++++|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+ ..+++|+
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 4567777777777777776666677777777777777777776566667777778888887777763322 2445677
Q ss_pred eEEcccce-eeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCC
Q 042715 78 PIAASSNN-FRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNN 153 (212)
Q Consensus 78 ~l~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n 153 (212)
+|++++|. +....+..+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+. +..+.++++|+.|++++|
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 77777743 33333446777888888888888888 555 4778889999999999774 467888999999999999
Q ss_pred eeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715 154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
++.+..+..+..+++|++|+|++|++.+.++.. ..+++++.+++.+|||.|+|.+
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 999888889999999999999999999777664 4789999999999999999975
No 5
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.3e-28 Score=193.75 Aligned_cols=201 Identities=18% Similarity=0.171 Sum_probs=135.0
Q ss_pred eecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEcc
Q 042715 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAAS 82 (212)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~ 82 (212)
++++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+. .+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 455555555555544455555555555555555555555555555555555555555555422111 23344555555
Q ss_pred cceeeeeCC-------------------------CcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--
Q 042715 83 SNNFRGSIP-------------------------QTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF-- 135 (212)
Q Consensus 83 ~n~~~~~~~-------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-- 135 (212)
+|.+....+ ..+..+++|++|++++|.+. ..| .+..+++|+.|++++|.+.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCccc
Confidence 554443222 24555666777777777666 333 3666777888888888763
Q ss_pred -CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715 136 -SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 136 -~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
+..+.++++|+.|++++|++.+..+..+..+++|++|++++|++.+.++.. ..+++++.+++.+||+.|+|.+
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 356788899999999999998888888999999999999999998776654 3788999999999999999985
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.1e-28 Score=194.94 Aligned_cols=134 Identities=22% Similarity=0.184 Sum_probs=117.4
Q ss_pred CCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEcc
Q 042715 75 KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLS 151 (212)
Q Consensus 75 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~ 151 (212)
+++++++++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+. +..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 4566777777777667778888999999999999999777888999999999999999874 3567889999999999
Q ss_pred CCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715 152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
+|++.+..|..+..+++|++|++++|++.+.++.. ..+++++.+++.+|++.|+||.
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999888999999999999999999999877654 4889999999999999999983
No 7
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.96 E-value=3.5e-28 Score=183.02 Aligned_cols=203 Identities=22% Similarity=0.207 Sum_probs=176.7
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceEE
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPIA 80 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l~ 80 (212)
++++++++++++++.+. .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.++...+ ..+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 46788999999999998 6666553 689999999999998888899999999999999999874322 4677899999
Q ss_pred cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeee
Q 042715 81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSG 157 (212)
Q Consensus 81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~ 157 (212)
+++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.. ..+..+++|+.|++++|++.+
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 9999998 677788889999999999999996666789999999999999998753 446788999999999999996
Q ss_pred ecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCCC
Q 042715 158 QIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 158 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
..+..+..+++|++|++++|++...++.......++.+.+.+|||.|+|.+
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence 666677889999999999999997777667888999999999999999864
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.6e-28 Score=185.68 Aligned_cols=198 Identities=25% Similarity=0.423 Sum_probs=97.1
Q ss_pred ceeecEEEccC-CccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccCCceE
Q 042715 4 CFDIIYIKLSG-NQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGKLKPI 79 (212)
Q Consensus 4 l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~l 79 (212)
+++|++|++++ |.+.+.+|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 44444444442 4444444444444444444444444444444444444444444444444444333322 2334444
Q ss_pred EcccceeeeeCCCcccCCC-cccEEEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCcccccEEEccCCee
Q 042715 80 AASSNNFRGSIPQTCKNEA-NLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKL 155 (212)
Q Consensus 80 ~l~~n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i 155 (212)
++++|.+.+.+|..+..++ +|++|++++|.+.+..|..+..+. |+.|++++|.+ .+..+..+++|+.|++++|.+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 4444444444444444444 445555555544444444444443 55555555443 223445555566666666655
Q ss_pred eeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCc
Q 042715 156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGL 203 (212)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~ 203 (212)
.+.++. +..+++|++|++++|.+.+.+|.. ..+++++.+++++|...
T Consensus 234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 533333 455566666666666665544442 35566666666666544
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.7e-28 Score=182.81 Aligned_cols=206 Identities=18% Similarity=0.181 Sum_probs=163.4
Q ss_pred CCceeecEEEccCCccccc--cCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC----CccccC
Q 042715 2 SLCFDIIYIKLSGNQLTGP--IPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI----PSEIGK 75 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~ 75 (212)
+++++|++|++++|.+... .+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+.... ...+++
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence 4566777777777766522 2445556677777777777766 34455778888888888888887432 234567
Q ss_pred CceEEcccceeeeeCCCcccCCCcccEEEccCCcccc-cCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEcc
Q 042715 76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG-RVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLS 151 (212)
Q Consensus 76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~ 151 (212)
|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+. +..+..+++|++|+++
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 8999999999887777788888999999999998875 47788899999999999999874 3567889999999999
Q ss_pred CCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-cc-ccccccccccCCCccCCCC
Q 042715 152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-QF-NTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~-~~l~~l~l~~n~~~~~~~~ 208 (212)
+|.+.+..+..+..+++|++|++++|.+.+..+... .+ ++++.+++++|++.|+|++
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 999987767788899999999999999998777543 55 4899999999999999874
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.6e-27 Score=196.04 Aligned_cols=206 Identities=20% Similarity=0.175 Sum_probs=181.7
Q ss_pred CCceeecEEEccCCccccc--cCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccC
Q 042715 2 SLCFDIIYIKLSGNQLTGP--IPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGK 75 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~ 75 (212)
+.+++|++|++++|.+.+. .+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.+..+ ..+++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 4678999999999998854 37888999999999999999884 55889999999999999999986544 34568
Q ss_pred CceEEcccceeeeeCCCcccCCCcccEEEccCCcccc-cCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEcc
Q 042715 76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEG-RVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLS 151 (212)
Q Consensus 76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~ 151 (212)
|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..++.+++|+.|++++|.+. +..+.++++|++|+++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 8999999999998888889999999999999999986 37888999999999999999874 4668899999999999
Q ss_pred CCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccc-cccccccccCCCccCCCC
Q 042715 152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFN-TFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~l~~l~l~~n~~~~~~~~ 208 (212)
+|++.+..|..+..+++|++|++++|++...++....++ +++.+++.+||+.|+|++
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999998889999999999999999999986665555666 599999999999999986
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=9e-27 Score=173.68 Aligned_cols=199 Identities=23% Similarity=0.271 Sum_probs=171.2
Q ss_pred eecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEcc
Q 042715 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAAS 82 (212)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l~ 82 (212)
+.++++++++.+. .+|..+. +++++|++++|.+....+.+|..+++|++|++++|.+....+ ..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678999999998 6776554 689999999999997777789999999999999999873322 345688999999
Q ss_pred cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeec
Q 042715 83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQI 159 (212)
Q Consensus 83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~ 159 (212)
+|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.. ..+..+++|++|++++|.+.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 999986666677889999999999999997777778999999999999998754 34788999999999999999766
Q ss_pred ChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCC
Q 042715 160 PQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 160 ~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~ 207 (212)
+..+..+++|++|++++|.+.+.++. ...+++++.+++.+||+.|+|.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 77789999999999999999877665 3478899999999999999997
No 12
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=4.9e-27 Score=175.62 Aligned_cols=202 Identities=22% Similarity=0.233 Sum_probs=172.1
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAA 81 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l 81 (212)
++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+. .+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4699999999999966676899999999999999999988888999999999999999999855543 4567899999
Q ss_pred ccceeeeeCCCcccCCCcccEEEccCCccccc-CCcccccCCcccEEEccCCCCCC---cccCCccccc----EEEccCC
Q 042715 82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGR-VPKSLASCTELKFLNLVSEGIFS---STLGNLIVLE----SLDLSNN 153 (212)
Q Consensus 82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~----~L~l~~n 153 (212)
++|.+....+..+..+++|++|++++|.+.+. .|..++.+++|+.|++++|.+.. ..+..+.+|+ ++++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999876666788999999999999999853 58889999999999999998754 4455555665 8999999
Q ss_pred eeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCC
Q 042715 154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~ 207 (212)
.+.+..+..+ ...+|++|++++|.+.+.++.. ..+++++++++.+||+.|+|+
T Consensus 188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9985555544 4558999999999999777654 478999999999999999997
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=2.3e-27 Score=199.89 Aligned_cols=202 Identities=31% Similarity=0.476 Sum_probs=121.1
Q ss_pred ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCceEE
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIA 80 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~ 80 (212)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+ ++|++|+
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 3444445554444444445555555555555555555554555555555555555555555554444432 3455666
Q ss_pred cccceeeeeCCCcccCCCcccEEEccCCcccccCCccc------------------------------------------
Q 042715 81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSL------------------------------------------ 118 (212)
Q Consensus 81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------------------------ 118 (212)
+++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 66666666666666666666666666665554444322
Q ss_pred ----------------------------ccCCcccEEEccCCCC---CCcccCCcccccEEEccCCeeeeecChhccCCC
Q 042715 119 ----------------------------ASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELT 167 (212)
Q Consensus 119 ----------------------------~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 167 (212)
+.++.|+.|++++|.+ .+..++.++.|+.|++++|++++.+|..++.++
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 2234556666666654 345566677777777777777777777777777
Q ss_pred CccEEEeeCCeeecCCCCCc-ccccccccccccCCCccC
Q 042715 168 SLEFFDVSDNLVIGPIPQGK-QFNTFETSSFDGNPGLCG 205 (212)
Q Consensus 168 ~L~~L~l~~n~~~~~~~~~~-~~~~l~~l~l~~n~~~~~ 205 (212)
+|++||+++|++++.+|... .++.++.+++++|+....
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 77777777777777766543 667777777777765543
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.8e-28 Score=188.43 Aligned_cols=204 Identities=18% Similarity=0.186 Sum_probs=111.9
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc-----cccCCc
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS-----EIGKLK 77 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----~l~~l~ 77 (212)
++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|.+. .++. .+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence 3444444444444444333334444444444444444444322222444444444444444443 1211 233444
Q ss_pred eEEcccce-eeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCC
Q 042715 78 PIAASSNN-FRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNN 153 (212)
Q Consensus 78 ~l~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n 153 (212)
+|++++|. +....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.. ..+..+++|+.|++++|
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 44554442 333333344445555555555555554444555555555555555554422 11223566777777777
Q ss_pred eeeee-------------------------------cChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCC
Q 042715 154 KLSGQ-------------------------------IPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNP 201 (212)
Q Consensus 154 ~i~~~-------------------------------~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~ 201 (212)
.+.+. +|..+..+++|++|++++|++...++.. ..+++++++++.+|+
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 66532 3445678899999999999998655543 588999999999999
Q ss_pred CccCCC
Q 042715 202 GLCGEP 207 (212)
Q Consensus 202 ~~~~~~ 207 (212)
+.|+|+
T Consensus 313 ~~~~~~ 318 (353)
T 2z80_A 313 WDCSCP 318 (353)
T ss_dssp BCCCHH
T ss_pred ccCcCC
Confidence 999986
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.3e-27 Score=181.52 Aligned_cols=197 Identities=20% Similarity=0.284 Sum_probs=125.0
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cCCceEEc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GKLKPIAA 81 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~l~l 81 (212)
+.++.|+++++.+. .+|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..+ ++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45666777777666 55665666677777777777666 56666666677777777777666 555433 34566666
Q ss_pred ccceeeeeCCCcccC---------CCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEc
Q 042715 82 SSNNFRGSIPQTCKN---------EANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDL 150 (212)
Q Consensus 82 ~~n~~~~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l 150 (212)
++|...+.+|..+.. +++|++|++++|.+. .+|..++.+++|++|++++|.+. +..+..+++|++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 666655555554432 666677777666666 55666666666777777666653 244556666666777
Q ss_pred cCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccC
Q 042715 151 SNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCG 205 (212)
Q Consensus 151 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~ 205 (212)
++|.+.+.+|..+..+++|++|++++|.+.+.+|.. ..+++++.+++.+|+....
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 666666566666666666777777666666555543 3666666666666665443
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=5e-27 Score=193.07 Aligned_cols=206 Identities=18% Similarity=0.184 Sum_probs=153.1
Q ss_pred CCceeecEEEccCCcccccc--CccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccC
Q 042715 2 SLCFDIIYIKLSGNQLTGPI--PYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGK 75 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~ 75 (212)
+++++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 45666777777776666433 5566777777777777777776667777777777777777777764433 23456
Q ss_pred CceEEcccceeeeeCCCcccCCCcccEEEccCCccccc---CCcccccCCcccEEEccCCCCC---CcccCCcccccEEE
Q 042715 76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGR---VPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLD 149 (212)
Q Consensus 76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~ 149 (212)
|++|++++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+. +..+..+++|++|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 77778887777766666777778888888888877642 2245777788888888888763 35677888888888
Q ss_pred ccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715 150 LSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 150 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
+++|++.+..|..+..++.| +|++++|.+.+.+|.. ..+++++.+++.+||+.|+|+.
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 88888887778888888888 8888888888777664 3788999999999999999974
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=8.1e-27 Score=178.51 Aligned_cols=197 Identities=18% Similarity=0.240 Sum_probs=174.9
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---------
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE--------- 72 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------- 72 (212)
.++++|++|++++|.+. .+|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+.+.+|..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 45789999999999999 88999999999999999999999 77888999999999999998877677754
Q ss_pred ---ccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCccccc
Q 042715 73 ---IGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLE 146 (212)
Q Consensus 73 ---l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~ 146 (212)
+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..++.+++|+.|++++|.+ .+..+..+++|+
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 668899999999998 78888999999999999999999 5777899999999999999876 346788999999
Q ss_pred EEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-ccccccccccccCCC
Q 042715 147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-QFNTFETSSFDGNPG 202 (212)
Q Consensus 147 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~l~~l~l~~n~~ 202 (212)
+|++++|.+.+.+|..+..+++|++|++++|.+.+.+|... .++.++.+.+..+..
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999998888999999999999999999999988888754 778888887766543
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=7.5e-27 Score=187.07 Aligned_cols=208 Identities=22% Similarity=0.223 Sum_probs=137.3
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cc----
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EI---- 73 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l---- 73 (212)
|+++++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+. .+
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 34566677777777766644444566666666666666666655565666666666666666655432222 22
Q ss_pred --------------------cCCceEEcccceeeeeCCCcccCCCcccEEE------------------------ccCCc
Q 042715 74 --------------------GKLKPIAASSNNFRGSIPQTCKNEANLAMIE------------------------LSSNL 109 (212)
Q Consensus 74 --------------------~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~------------------------l~~~~ 109 (212)
++|++|++++|.+....+..+..+++|++|+ +++|.
T Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 2334444444444433333344444444443 34444
Q ss_pred ccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC
Q 042715 110 LEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG 186 (212)
Q Consensus 110 ~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 186 (212)
+.+..+..+..+++|+.|++++|.+.. ..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+.+..+..
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 442222345667788888888887642 45778888999999999998888889999999999999999998766653
Q ss_pred -cccccccccccccCCCccCCCC
Q 042715 187 -KQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 187 -~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
..+++++.+++.+||+.|+|.+
T Consensus 316 ~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp BSCGGGCCEEECCSSCEECSGGG
T ss_pred cCCCcccCEEEccCCCccCccch
Confidence 4788999999999999999874
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8.3e-27 Score=175.14 Aligned_cols=207 Identities=19% Similarity=0.203 Sum_probs=176.9
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCe-eeecCCCCCCCCCCccEEEcccccceecCCc---cccCC
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQ-LTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKL 76 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l 76 (212)
|+++++|++|++++|.+.+..+..|..+++|++|++++|. +....+..+..+++|++|++++|.+....+. .+++|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 4678999999999999997778899999999999999997 8867788999999999999999999855444 45678
Q ss_pred ceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCC
Q 042715 77 KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNN 153 (212)
Q Consensus 77 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n 153 (212)
++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..+..+++|++|++++|
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 99999999998666667888999999999999999666667899999999999999874 467888999999999999
Q ss_pred eeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCC
Q 042715 154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 207 (212)
.+.+..+..+..+++|++|++++|++....+......+++.+....+...|..|
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred cCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence 999666677999999999999999998655544444567777778888887665
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5.6e-27 Score=188.14 Aligned_cols=202 Identities=22% Similarity=0.210 Sum_probs=165.4
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-------------
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI------------- 69 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~------------- 69 (212)
.+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N 109 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence 45689999999999997777889999999999999999886554 888888998888888776321
Q ss_pred ------CccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccc-cCCcccEEEccCCCCCC-cccCC
Q 042715 70 ------PSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLA-SCTELKFLNLVSEGIFS-STLGN 141 (212)
Q Consensus 70 ------~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~-~~~~~ 141 (212)
+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+.. .....
T Consensus 110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (487)
T 3oja_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189 (487)
T ss_dssp CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc
Confidence 22355677888888888766677778888999999999998876776665 78899999999998754 33446
Q ss_pred cccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCC
Q 042715 142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 142 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 207 (212)
+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.+.++....+++++.+++.+|++.|++.
T Consensus 190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 8899999999999985 5555889999999999999999877666788999999999999998653
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=4.4e-26 Score=189.81 Aligned_cols=206 Identities=21% Similarity=0.222 Sum_probs=145.7
Q ss_pred CceeecEEEccCCccccccC-ccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccce--ecCCc---cccCC
Q 042715 3 LCFDIIYIKLSGNQLTGPIP-YWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT--GRIPS---EIGKL 76 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~---~l~~l 76 (212)
++++|++|++++|.+.+.+| ..|..+++|++|++++|.+....+..|..+++|+.|++++|.+. +..|. .+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 44555555555555543333 34555555666666655555555555666666666666666553 22333 34567
Q ss_pred ceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCC--------cccccCCcccEEEccCCCCCC---cccCCcccc
Q 042715 77 KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP--------KSLASCTELKFLNLVSEGIFS---STLGNLIVL 145 (212)
Q Consensus 77 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L 145 (212)
++|++++|.++...+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.. ..+.++++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 888888888876656667888888888888888774321 236777888889988887743 347788899
Q ss_pred cEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc--ccccccccccccCCCccCCCC
Q 042715 146 ESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK--QFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 146 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~--~~~~l~~l~l~~n~~~~~~~~ 208 (212)
+.|++++|++++..+..+..+++|+.|++++|++.+.++... .+++++.+++.+|||.|+|+.
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999986666677888999999999999987766533 578999999999999999985
No 22
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=7.6e-27 Score=177.92 Aligned_cols=201 Identities=22% Similarity=0.212 Sum_probs=159.6
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceec--------------
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR-------------- 68 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------- 68 (212)
.+++|++|++++|.+....|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence 46789999999999887667788889999999999998875444 78888888888888877631
Q ss_pred -----CCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCccc-ccCCcccEEEccCCCCCC-cccCC
Q 042715 69 -----IPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSL-ASCTELKFLNLVSEGIFS-STLGN 141 (212)
Q Consensus 69 -----~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~-~~~~~ 141 (212)
.+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.. .....
T Consensus 110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 189 (317)
T 3o53_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189 (317)
T ss_dssp CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc
Confidence 12234566777777777776555677778889999999998886555555 467899999999998754 33345
Q ss_pred cccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCC
Q 042715 142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGE 206 (212)
Q Consensus 142 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~ 206 (212)
+++|++|++++|.+. .++..+..+++|++|++++|.+.+.++....+++++.+++++|++.|++
T Consensus 190 l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp CTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred cccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence 889999999999998 4566688999999999999999876666668899999999999999764
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3.8e-26 Score=178.69 Aligned_cols=203 Identities=20% Similarity=0.181 Sum_probs=131.8
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCce
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKP 78 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~ 78 (212)
+++++|++|++++|.+.+..|..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+. .+++|++
T Consensus 90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCE
T ss_pred cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCE
Confidence 4566666666666666655555566666666666666666644444456666666666666665533222 2234455
Q ss_pred EEcccceeeeeC-----------------------------------------------------------CCcccCCCc
Q 042715 79 IAASSNNFRGSI-----------------------------------------------------------PQTCKNEAN 99 (212)
Q Consensus 79 l~l~~n~~~~~~-----------------------------------------------------------~~~~~~~~~ 99 (212)
|++++|.+.... ...+..+++
T Consensus 170 L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~ 249 (390)
T 3o6n_A 170 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG 249 (390)
T ss_dssp EECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTT
T ss_pred EECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCC
Confidence 555555433210 112344567
Q ss_pred ccEEEccCCcccccCCcccccCCcccEEEccCCCCCC--cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCC
Q 042715 100 LAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177 (212)
Q Consensus 100 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 177 (212)
|++|++++|.+.+..|..+..+++|+.|++++|.+.. ..+..+++|++|++++|++. .+|..+..+++|++|++++|
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCC
Confidence 7777777777776666777777778888887777643 33456778888888888887 56666777788888888888
Q ss_pred eeecCCCCCcccccccccccccCCCccCCC
Q 042715 178 LVIGPIPQGKQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 178 ~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~ 207 (212)
.+.... ...++.++.+++.+|++.|++.
T Consensus 329 ~i~~~~--~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 329 SIVTLK--LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CCCCCC--CCTTCCCSEEECCSSCEEHHHH
T ss_pred ccceeC--chhhccCCEEEcCCCCccchhH
Confidence 887553 4577888999999999888653
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.3e-26 Score=187.30 Aligned_cols=202 Identities=20% Similarity=0.186 Sum_probs=133.9
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCce
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKP 78 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~ 78 (212)
+++++|++|++++|.+.+..|..|..+++|++|++++|.+...++..|..+++|++|++++|.+.+..+. .+++|++
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 175 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence 4556666666666666655555556666666666666666644444455666666666666655533332 2234455
Q ss_pred EEcccceeeee-----------------------------------------------------------CCCcccCCCc
Q 042715 79 IAASSNNFRGS-----------------------------------------------------------IPQTCKNEAN 99 (212)
Q Consensus 79 l~l~~n~~~~~-----------------------------------------------------------~~~~~~~~~~ 99 (212)
|++++|.+... -+..+..+++
T Consensus 176 L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~ 255 (597)
T 3oja_B 176 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG 255 (597)
T ss_dssp EECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTT
T ss_pred EECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCC
Confidence 55555443321 0123455677
Q ss_pred ccEEEccCCcccccCCcccccCCcccEEEccCCCCCC--cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCC
Q 042715 100 LAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177 (212)
Q Consensus 100 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 177 (212)
|+.|++++|.+.+..|..++.+++|+.|++++|.+.. ..+..+++|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus 256 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence 7778888887776667777788888888888887643 44456778888888888887 56767777888888888888
Q ss_pred eeecCCCCCcccccccccccccCCCccCC
Q 042715 178 LVIGPIPQGKQFNTFETSSFDGNPGLCGE 206 (212)
Q Consensus 178 ~~~~~~~~~~~~~~l~~l~l~~n~~~~~~ 206 (212)
.+.+.. ...++.++.+++.+||+.|+|
T Consensus 335 ~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 335 SIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 887553 446788999999999998865
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.8e-25 Score=176.13 Aligned_cols=196 Identities=18% Similarity=0.127 Sum_probs=153.1
Q ss_pred ecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEccc
Q 042715 7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAASS 83 (212)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~~ 83 (212)
...++.++..+. .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+....+. .+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 457788887877 6676554 6899999999999988899999999999999999999855444 456789999999
Q ss_pred ceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccC-------------------------CCCCC-c
Q 042715 84 NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS-------------------------EGIFS-S 137 (212)
Q Consensus 84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-------------------------n~~~~-~ 137 (212)
|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++ |.+.. .
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 999866666788899999999999988855444555555555555554 44322 3
Q ss_pred ccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccC
Q 042715 138 TLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCG 205 (212)
Q Consensus 138 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~ 205 (212)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+.. ..+++++.+++.+|....-
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 3556677888888888888777888888999999999999888766553 4788999999999976543
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=5.2e-25 Score=168.62 Aligned_cols=199 Identities=19% Similarity=0.227 Sum_probs=136.3
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc-ccCCceEEccc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE-IGKLKPIAASS 83 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~l~l~~ 83 (212)
+++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|.. +++|++|++++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~ 130 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHE 130 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCC
Confidence 56788888888888666667888888999999888888777888888888989988888877 44433 35677777777
Q ss_pred ceeeeeCCCcccCCCcccEEEccCCcccc--cCCcccccCCcccEEEccC---------------------CCCC---Cc
Q 042715 84 NNFRGSIPQTCKNEANLAMIELSSNLLEG--RVPKSLASCTELKFLNLVS---------------------EGIF---SS 137 (212)
Q Consensus 84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~---------------------n~~~---~~ 137 (212)
|.+....+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++ |.+. +.
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG
T ss_pred CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH
Confidence 77664444445556666666666665532 3344455555555555544 4432 24
Q ss_pred ccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715 138 TLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC 204 (212)
Q Consensus 138 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~ 204 (212)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...+.....+++++++++.+|+...
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence 4566677777777777777666666777777777777777777544445567777777777777654
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.2e-25 Score=176.58 Aligned_cols=104 Identities=23% Similarity=0.194 Sum_probs=73.2
Q ss_pred EEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCee
Q 042715 103 IELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV 179 (212)
Q Consensus 103 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~ 179 (212)
|++++|.+.+..+..++.+++|+.|++++|.+. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence 333333333334555666677777777777663 34667778888888888888766677788888888888888888
Q ss_pred ecCCCC-CcccccccccccccCCCccCC
Q 042715 180 IGPIPQ-GKQFNTFETSSFDGNPGLCGE 206 (212)
Q Consensus 180 ~~~~~~-~~~~~~l~~l~l~~n~~~~~~ 206 (212)
.+..|. ...+++++++++++|....-+
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccChhhccccccccEEECCCCccccCC
Confidence 777554 347788888888888766533
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=4.3e-25 Score=172.72 Aligned_cols=197 Identities=24% Similarity=0.269 Sum_probs=127.5
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc----cccCCce
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS----EIGKLKP 78 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~ 78 (212)
++++|++|+++++.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++. .+++|++
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT 145 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcE
Confidence 4567777777777777555567777777777777777777666666777777777777777776 3332 3456777
Q ss_pred EEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCC------------------------------------
Q 042715 79 IAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCT------------------------------------ 122 (212)
Q Consensus 79 l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------------------------------ 122 (212)
|++++|.+....+..+..+++|++|++++|.+.+.. ++.++
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence 777777777655566777777777777777665321 11112
Q ss_pred ----cccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCccccccccccc
Q 042715 123 ----ELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSF 197 (212)
Q Consensus 123 ----~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l 197 (212)
+|+.|++++|.+.. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.......+++++++++
T Consensus 223 ~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 223 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEEC
T ss_pred cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEEC
Confidence 22333333333221 2344566777777777777766677777777777777777777655444445666777777
Q ss_pred ccCCCc
Q 042715 198 DGNPGL 203 (212)
Q Consensus 198 ~~n~~~ 203 (212)
++|...
T Consensus 303 ~~n~l~ 308 (390)
T 3o6n_A 303 SHNHLL 308 (390)
T ss_dssp CSSCCC
T ss_pred CCCcce
Confidence 776543
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=172.28 Aligned_cols=202 Identities=21% Similarity=0.177 Sum_probs=174.9
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAA 81 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l 81 (212)
++++.|++++|.+....+..|..+++|++|++++|.+....+.+|..+++|++|++++|.++...+ ..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 568999999999997778899999999999999999998888899999999999999999883332 34567899999
Q ss_pred ccceeeeeCCCcccCCCcccEEEccCC-cccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec
Q 042715 82 SSNNFRGSIPQTCKNEANLAMIELSSN-LLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI 159 (212)
Q Consensus 82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~ 159 (212)
++|.+....+..+..+++|++|++++| .+....+..+..+++|+.|++++|.+.. ..+..+++|+.|++++|.+.+..
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccC
Confidence 999999777778899999999999985 4554445578899999999999998854 45778899999999999999888
Q ss_pred ChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCC
Q 042715 160 PQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGE 206 (212)
Q Consensus 160 ~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~ 206 (212)
+..+..+++|++|++++|.+.+..+.. ..+++++.|++++|....-.
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 999999999999999999998876653 47899999999999876443
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=3.4e-24 Score=164.07 Aligned_cols=198 Identities=23% Similarity=0.263 Sum_probs=148.4
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----------
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---------- 70 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---------- 70 (212)
|+++++|++|++++|.+.+..|..|..+++|++|++++|.++. .|..+. ++|++|++++|.+....+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence 4678899999999999987778889999999999999998873 443322 455555555555442211
Q ss_pred -------------------ccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccC
Q 042715 71 -------------------SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131 (212)
Q Consensus 71 -------------------~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 131 (212)
..+++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 12334555555555554 2333222 5778888888888766678889999999999999
Q ss_pred CCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-------ccccccccccccCC
Q 042715 132 EGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-------QFNTFETSSFDGNP 201 (212)
Q Consensus 132 n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-------~~~~l~~l~l~~n~ 201 (212)
|.+.. ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+... ....++.+++.+||
T Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 98743 46788999999999999998 788889999999999999999987655432 34678899999999
Q ss_pred CccC
Q 042715 202 GLCG 205 (212)
Q Consensus 202 ~~~~ 205 (212)
+.+.
T Consensus 305 ~~~~ 308 (330)
T 1xku_A 305 VQYW 308 (330)
T ss_dssp SCGG
T ss_pred cccc
Confidence 8764
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.6e-25 Score=179.93 Aligned_cols=197 Identities=24% Similarity=0.263 Sum_probs=134.9
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc----cccCCce
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS----EIGKLKP 78 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~ 78 (212)
++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .+|. .+++|++
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT 151 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCE
Confidence 4677888888888887666667888888888888888888777777788888888888888777 3332 3456788
Q ss_pred EEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCc-----------------------------------
Q 042715 79 IAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTE----------------------------------- 123 (212)
Q Consensus 79 l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----------------------------------- 123 (212)
|++++|.+....+..+..+++|++|++++|.+.+.. ++.+++
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence 888888887666667777788888888888776321 111222
Q ss_pred -----ccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCccccccccccc
Q 042715 124 -----LKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSF 197 (212)
Q Consensus 124 -----L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l 197 (212)
|+.|++++|.+.. ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+.....+++++.|++
T Consensus 229 ~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 229 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308 (597)
T ss_dssp SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEEC
T ss_pred ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEEC
Confidence 3333333333321 3345667777777777777766677777777777777777777665544445667777777
Q ss_pred ccCCCc
Q 042715 198 DGNPGL 203 (212)
Q Consensus 198 ~~n~~~ 203 (212)
++|...
T Consensus 309 s~N~l~ 314 (597)
T 3oja_B 309 SHNHLL 314 (597)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 777654
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=9.6e-25 Score=167.27 Aligned_cols=197 Identities=22% Similarity=0.238 Sum_probs=117.8
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc-ccCCceEEccc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE-IGKLKPIAASS 83 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~l~l~~ 83 (212)
+++++|++++|.+....+..|..+++|++|++++|.+++..+.+|..+++|++|++++|.+. .+|.. +++|++|++++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~ 132 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHD 132 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECCC
Confidence 45677777777776555666777777777777777777666667777777777777777666 34332 24556666666
Q ss_pred ceeeeeCCCcccCCCcccEEEccCCcc----------------------------------------------cccCCcc
Q 042715 84 NNFRGSIPQTCKNEANLAMIELSSNLL----------------------------------------------EGRVPKS 117 (212)
Q Consensus 84 n~~~~~~~~~~~~~~~L~~L~l~~~~~----------------------------------------------~~~~~~~ 117 (212)
|.+....+..+..+++|++|++++|.+ .+..+..
T Consensus 133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~ 212 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED 212 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTS
T ss_pred CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHH
Confidence 655533333344455555555555544 3222334
Q ss_pred cccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-------
Q 042715 118 LASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK------- 187 (212)
Q Consensus 118 ~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~------- 187 (212)
+..+++|+.|++++|.+.. ..+..+++|++|++++|++. .+|..+..+++|++|++++|++.+..+...
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence 4455555555555555432 24556666667777777666 566666666777777777776665443321
Q ss_pred ccccccccccccCCCc
Q 042715 188 QFNTFETSSFDGNPGL 203 (212)
Q Consensus 188 ~~~~l~~l~l~~n~~~ 203 (212)
....++.+++.+||+.
T Consensus 292 ~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCCBSEEECCSSSSC
T ss_pred ccccccceEeecCccc
Confidence 1345666777777765
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=7.5e-25 Score=178.83 Aligned_cols=203 Identities=16% Similarity=0.154 Sum_probs=162.9
Q ss_pred ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecC--CCCCCCCCCccEEEcccccceecC--CccccCCceE
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCI--PFEIGNLKNLSTLCLEHKQLTGRI--PSEIGKLKPI 79 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~l 79 (212)
+++|++|+++++.+....+. ..+++|++|++++|.+.... +..+..+++|++|++++|.+.... ...+++|++|
T Consensus 324 l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L 401 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred ccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEE
Confidence 34455555555554433322 56778888888888776433 456677888888888888776322 2345678999
Q ss_pred EcccceeeeeCC-CcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC----CcccCCcccccEEEccCCe
Q 042715 80 AASSNNFRGSIP-QTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF----SSTLGNLIVLESLDLSNNK 154 (212)
Q Consensus 80 ~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~L~~L~l~~n~ 154 (212)
++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..+..+++|++|++++|+
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 999999886555 46788899999999999998788888999999999999999763 4678899999999999999
Q ss_pred eeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715 155 LSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 155 i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
+.+..|..+..+++|++|++++|++.+.++.. ..+++++.+++.+|++.|+|+.
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99888999999999999999999999887764 4889999999999999999985
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=173.40 Aligned_cols=202 Identities=20% Similarity=0.166 Sum_probs=115.7
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCce
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKP 78 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~ 78 (212)
+++++|++|++++|.+.+..|..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+. .+++|++
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 4566666666666666655566666666666666666666655555566666666666666666543332 3345666
Q ss_pred EEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC-----------------------
Q 042715 79 IAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF----------------------- 135 (212)
Q Consensus 79 l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~----------------------- 135 (212)
|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 777666666555555666666666666666555332223333444444444333221
Q ss_pred -------------------------C---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-
Q 042715 136 -------------------------S---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG- 186 (212)
Q Consensus 136 -------------------------~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~- 186 (212)
. ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 0 12334555666666666665555555666666666666666666554433
Q ss_pred cccccccccccccCCCc
Q 042715 187 KQFNTFETSSFDGNPGL 203 (212)
Q Consensus 187 ~~~~~l~~l~l~~n~~~ 203 (212)
..+++++.+++.+|...
T Consensus 293 ~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp TTCTTCCEEECCSSCCS
T ss_pred cCcccCCEEECCCCcCc
Confidence 25666777777776544
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.7e-24 Score=164.06 Aligned_cols=204 Identities=21% Similarity=0.266 Sum_probs=170.6
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCC-CCCCCCCCccEEEcccccceecCCc---cccCCce
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP-FEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKP 78 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~ 78 (212)
.+++|++|++++|.+. .+|..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+. .+++|++
T Consensus 76 ~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp SCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred cccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 4789999999999998 677779999999999999999996554 5789999999999999999865554 4567899
Q ss_pred EEcccceeee-eCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCe
Q 042715 79 IAASSNNFRG-SIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNK 154 (212)
Q Consensus 79 l~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~ 154 (212)
|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+++|++|++++|.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 9999999986 577888999999999999999997778889999999999999998754 467789999999999999
Q ss_pred eeeecChhccCCC-CccEEEeeCCeeecCCCCC---cccccccccccccCCCccCCC
Q 042715 155 LSGQIPQQFGELT-SLEFFDVSDNLVIGPIPQG---KQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 155 i~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~---~~~~~l~~l~l~~n~~~~~~~ 207 (212)
+.+..+..+..++ +|++|++++|++....+.. ..+...+.+....+...|..|
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred CcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 9988888888885 9999999999998654321 123334455666677777655
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=5.5e-25 Score=187.10 Aligned_cols=204 Identities=19% Similarity=0.241 Sum_probs=114.1
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCce
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKP 78 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~ 78 (212)
+.+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+. .+++|++
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 4456666666666666655555566666666666666666555555566666666666666655422221 2334445
Q ss_pred EEcccceeee------------------eCCC----------------------cccCCCcccEEEccCCcccccC----
Q 042715 79 IAASSNNFRG------------------SIPQ----------------------TCKNEANLAMIELSSNLLEGRV---- 114 (212)
Q Consensus 79 l~l~~n~~~~------------------~~~~----------------------~~~~~~~L~~L~l~~~~~~~~~---- 114 (212)
|++++|.+.. .++. .+..+++|++|++++|.+.+..
T Consensus 367 L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp EEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred EECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 5554444321 1110 0124566677777777665321
Q ss_pred --------------------------CcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccC
Q 042715 115 --------------------------PKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGE 165 (212)
Q Consensus 115 --------------------------~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 165 (212)
+..+..+++|+.|++++|.+. +..+.++++|+.|+|++|++++..+..+.
T Consensus 447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~- 525 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP- 525 (844)
T ss_dssp SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-
T ss_pred cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-
Confidence 122344445555555555332 23345556666666666666543333332
Q ss_pred CCCccEEEeeCCeeecCCCCCcccccccccccccCCCccCCCCC
Q 042715 166 LTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCGEPLP 209 (212)
Q Consensus 166 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 209 (212)
++|+.|++++|++.+.+|. .+.+++.+++.+||+.|+|++.
T Consensus 526 -~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 526 -ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp -SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSCC
T ss_pred -ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCcccccccH
Confidence 5566666666666665554 3568899999999999999864
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.2e-25 Score=171.01 Aligned_cols=197 Identities=20% Similarity=0.179 Sum_probs=156.0
Q ss_pred CceeecEEEccCCccccccCccc--cccCCCceEEccCCeeeecCCCCCCCC-----CCccEEEcccccceecCCcc---
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWL--ENLENISTLWLEKNQLTGCIPFEIGNL-----KNLSTLCLEHKQLTGRIPSE--- 72 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~--- 72 (212)
++++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 57889999999999987788765 8899999999999998865 6666666 89999999999988554443
Q ss_pred ccCCceEEcccceeeee--CCCcc--cCCCcccEEEccCCcccc---cCCcccccCCcccEEEccCCCCCC----cccCC
Q 042715 73 IGKLKPIAASSNNFRGS--IPQTC--KNEANLAMIELSSNLLEG---RVPKSLASCTELKFLNLVSEGIFS----STLGN 141 (212)
Q Consensus 73 l~~l~~l~l~~n~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~ 141 (212)
+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+.+ .....+..+++|+.|++++|.+.. ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 55779999999986543 22233 778899999999998872 122334567899999999998754 34556
Q ss_pred cccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715 142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC 204 (212)
Q Consensus 142 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~ 204 (212)
+++|++|++++|.++ .+|..+. ++|++|++++|++.+. |....+++++++++.+|++..
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 789999999999998 7777665 8899999999999877 557788999999999998753
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=4.1e-25 Score=182.62 Aligned_cols=181 Identities=20% Similarity=0.284 Sum_probs=132.7
Q ss_pred CCCceeecEEEccCCccccc-----------------cCcccc--ccCCCceEEccCCeeeecCCCCCCCCCCccEEEcc
Q 042715 1 ISLCFDIIYIKLSGNQLTGP-----------------IPYWLE--NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLE 61 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 61 (212)
|+++++|++|++++|.+.+. +|+.+. .+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 35688999999999998864 888888 89999999999999888888899999999999999
Q ss_pred ccc-cee-cCCccc---------cCCceEEcccceeeeeCCC--cccCCCcccEEEccCCcccccCCcccccCCcccEEE
Q 042715 62 HKQ-LTG-RIPSEI---------GKLKPIAASSNNFRGSIPQ--TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLN 128 (212)
Q Consensus 62 ~~~-~~~-~~~~~l---------~~l~~l~l~~n~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 128 (212)
+|. +++ .+|..+ ++|++|++++|.++ .+|. .++.+++|++|++++|.+.+.+| .++.+++|+.|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 997 775 555433 67788888888877 6666 67777778888888877776666 666777777777
Q ss_pred ccCCCC--CCcccCCccc-ccEEEccCCeeeeecChhccCCC--CccEEEeeCCeeecCCC
Q 042715 129 LVSEGI--FSSTLGNLIV-LESLDLSNNKLSGQIPQQFGELT--SLEFFDVSDNLVIGPIP 184 (212)
Q Consensus 129 l~~n~~--~~~~~~~~~~-L~~L~l~~n~i~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~ 184 (212)
+++|.+ .+..+..+++ |++|++++|.+. .+|..+...+ +|++|++++|.+.+.+|
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 777755 3344556666 666666666666 5555554433 56666666666555443
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.5e-24 Score=161.86 Aligned_cols=179 Identities=22% Similarity=0.283 Sum_probs=104.1
Q ss_pred cccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEEcccceeeeeCCCcccCCCcccEE
Q 042715 26 ENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMI 103 (212)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L 103 (212)
..+++|+.|++.++.+.. . ..+..+++|++|++++|.+.+ ++ ..+++|++|++++|.+....+..+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 445555666665555541 1 234555556666666555542 21 223445556666665554444445566666666
Q ss_pred EccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee
Q 042715 104 ELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 180 (212)
++++|.+.+..+..++.+++|+.|++++|.+.. ..+..+++|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 666666664444455666666666666665532 22456666666666666666555555566666677777766666
Q ss_pred cCCCCC-cccccccccccccCCCccCCC
Q 042715 181 GPIPQG-KQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 181 ~~~~~~-~~~~~l~~l~l~~n~~~~~~~ 207 (212)
+.++.. ..+++++.+++.+|++.|.|+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 655542 356666666777777666665
No 40
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=1.2e-23 Score=155.16 Aligned_cols=175 Identities=20% Similarity=0.203 Sum_probs=122.5
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAA 81 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l 81 (212)
...++++++++.+. .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+.+..+. .+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34678999998888 6666554 6899999999999887888889999999999999988744432 3445677777
Q ss_pred ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeee
Q 042715 82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQ 158 (212)
Q Consensus 82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~ 158 (212)
++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+++|++|++++|++.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 7777765555556666777777777777764444455666677777777766532 2455666677777777776655
Q ss_pred cChhccCCCCccEEEeeCCeeecC
Q 042715 159 IPQQFGELTSLEFFDVSDNLVIGP 182 (212)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~n~~~~~ 182 (212)
.+..+..+++|++|++++|++...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 555666666777777777766554
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=8.4e-24 Score=173.93 Aligned_cols=201 Identities=20% Similarity=0.172 Sum_probs=106.1
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecC-CCCCCCCCCccEEEcccccceecC--C---ccccC
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCI-PFEIGNLKNLSTLCLEHKQLTGRI--P---SEIGK 75 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~--~---~~l~~ 75 (212)
+++++|++|++++|.+....|..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+.. + ..+++
T Consensus 298 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377 (606)
T ss_dssp CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence 45666777777777666555555666666666666666554222 223555555555555555544221 1 22334
Q ss_pred CceEEcccceeeeeCCCcc-------------------------cCCCcccEEEccCCcccccCCcccccCCcccEEEcc
Q 042715 76 LKPIAASSNNFRGSIPQTC-------------------------KNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLV 130 (212)
Q Consensus 76 l~~l~l~~n~~~~~~~~~~-------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 130 (212)
|++|++++|.+....+..+ ..+++|++|++++|.+.+..+..++.+++|+.|+++
T Consensus 378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence 4445555444444434444 444555555555555544444445555555555555
Q ss_pred CCCCCC------cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCc
Q 042715 131 SEGIFS------STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGL 203 (212)
Q Consensus 131 ~n~~~~------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~ 203 (212)
+|.+.. ..+..+++|++|++++|.+.+..|.++..+++|++|++++|++.+..|.. ..++.+ .+++.+|...
T Consensus 458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred CCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 554422 23445555666666666665555555666666666666666665544432 244455 5555665544
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.5e-23 Score=156.18 Aligned_cols=179 Identities=22% Similarity=0.258 Sum_probs=154.8
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAA 81 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l 81 (212)
+++++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.+....+ ..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 469999999999996666789999999999999999997777778999999999999999984333 34568899999
Q ss_pred ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeee
Q 042715 82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQ 158 (212)
Q Consensus 82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~ 158 (212)
++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+++|++|++++|.+.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 9999987777778899999999999999996666668899999999999998753 4577899999999999999966
Q ss_pred cChhccCCCCccEEEeeCCeeecCC
Q 042715 159 IPQQFGELTSLEFFDVSDNLVIGPI 183 (212)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~n~~~~~~ 183 (212)
.+..+..+++|+.|++++|++...-
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CHHHhccccCCCEEEecCCCeeCCC
Confidence 6667889999999999999986443
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=2.8e-24 Score=175.45 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=127.6
Q ss_pred CCCCCccEEEcccccceecCCcc---ccCCceEEcccceeee--eCCCcccCCCcccEEEccCCcccccCC-cccccCCc
Q 042715 50 GNLKNLSTLCLEHKQLTGRIPSE---IGKLKPIAASSNNFRG--SIPQTCKNEANLAMIELSSNLLEGRVP-KSLASCTE 123 (212)
Q Consensus 50 ~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~l~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~ 123 (212)
..+++|++|++++|.+.+..+.. +++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..| ..+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 56788888888888887655543 4567888998888875 223457788889999999998886344 45778889
Q ss_pred ccEEEccCCCCCCcccCCc-ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCC
Q 042715 124 LKFLNLVSEGIFSSTLGNL-IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNP 201 (212)
Q Consensus 124 L~~L~l~~n~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~ 201 (212)
|+.|++++|.+....+..+ ++|+.|++++|+++ .+|..+..+++|++|++++|++...++. ...+++++.+++.+||
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 9999999998866555555 68999999999998 6777777999999999999999966655 5688999999999999
Q ss_pred CccCCCC
Q 042715 202 GLCGEPL 208 (212)
Q Consensus 202 ~~~~~~~ 208 (212)
+.|+|++
T Consensus 509 ~~c~c~~ 515 (562)
T 3a79_B 509 WDCTCPG 515 (562)
T ss_dssp BCCCHHH
T ss_pred cCCCcch
Confidence 9999974
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1e-23 Score=161.62 Aligned_cols=201 Identities=15% Similarity=0.127 Sum_probs=143.7
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeee---------------------cCCCCCCCCCCccEEE
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTG---------------------CIPFEIGNLKNLSTLC 59 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------------~~~~~~~~l~~L~~L~ 59 (212)
|+++++|++|++++|.+.+..|..|..+++|++|++++|.+.. ..+..+..+++|+.|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 3566777777777777776666677777777777777776552 2223355667777777
Q ss_pred ccccccee--cCCccc-----------------------cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccC
Q 042715 60 LEHKQLTG--RIPSEI-----------------------GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRV 114 (212)
Q Consensus 60 l~~~~~~~--~~~~~l-----------------------~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 114 (212)
+++|.+.. ..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+..
T Consensus 154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 77766541 111111 24556666666666555567888899999999999999777
Q ss_pred CcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecChhccC------CCCccEEEeeCCeee--cCCC
Q 042715 115 PKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIPQQFGE------LTSLEFFDVSDNLVI--GPIP 184 (212)
Q Consensus 115 ~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~------~~~L~~L~l~~n~~~--~~~~ 184 (212)
+..+..+++|+.|++++|.+. +..+..+++|++|++++|.+++..+..+.. .+.++.|++++|++. ...+
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 778999999999999999874 456788999999999999999666666654 367899999999986 3343
Q ss_pred C-CcccccccccccccCC
Q 042715 185 Q-GKQFNTFETSSFDGNP 201 (212)
Q Consensus 185 ~-~~~~~~l~~l~l~~n~ 201 (212)
. ...++.++.+++++|.
T Consensus 314 ~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGTTBCCSTTEEC----
T ss_pred ccccccchhhhhhccccc
Confidence 3 3377889999998874
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=4.3e-24 Score=176.56 Aligned_cols=57 Identities=26% Similarity=0.239 Sum_probs=30.0
Q ss_pred cccEEEccCCeeeeecChhcc--CCCCccEEEeeCCeeecCCCCCcccccccccccccCC
Q 042715 144 VLESLDLSNNKLSGQIPQQFG--ELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNP 201 (212)
Q Consensus 144 ~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~ 201 (212)
+|+.|++++|+++ .+|..+. .+++|++|++++|++.+.+.....+++++.+++++|.
T Consensus 489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCB
T ss_pred CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCc
Confidence 5555555555555 4555444 5555555555555555533333355555555554444
No 46
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.1e-23 Score=154.19 Aligned_cols=192 Identities=18% Similarity=0.211 Sum_probs=159.7
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCe-eeecCCCCCCCCCCccEEEccc-ccceecCCc---cccCCceE
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQ-LTGCIPFEIGNLKNLSTLCLEH-KQLTGRIPS---EIGKLKPI 79 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~---~l~~l~~l 79 (212)
+++++|++++|.+.+..+..|..+++|++|++++|. ++...+.+|..+++|++|++++ |.+....+. .+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999996667689999999999999997 8877777899999999999998 888744333 45678999
Q ss_pred EcccceeeeeCCCcccCCCccc---EEEccCC-cccccCCcccccCCccc-EEEccCCCCCC---cccCCcccccEEEcc
Q 042715 80 AASSNNFRGSIPQTCKNEANLA---MIELSSN-LLEGRVPKSLASCTELK-FLNLVSEGIFS---STLGNLIVLESLDLS 151 (212)
Q Consensus 80 ~l~~n~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~n~~~~---~~~~~~~~L~~L~l~ 151 (212)
++++|.+.. +|. +..+++++ +|++++| .+.+..+..+..+++|+ .|++++|.+.. ..+.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999885 554 77778887 9999999 88866666788999999 99999998743 23334 789999999
Q ss_pred CCe-eeeecChhccCC-CCccEEEeeCCeeecCCCCCcccccccccccccCC
Q 042715 152 NNK-LSGQIPQQFGEL-TSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNP 201 (212)
Q Consensus 152 ~n~-i~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~ 201 (212)
+|. +.+..+..+..+ ++|+.|++++|++.+.++. .+++++.+.+.++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 995 986667888899 9999999999999865554 78899999988775
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=4.3e-24 Score=172.76 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=119.4
Q ss_pred CCCCCccEEEcccccceecCCc---cccCCceEEcccceeee--eCCCcccCCCcccEEEccCCcccccCCc-ccccCCc
Q 042715 50 GNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAASSNNFRG--SIPQTCKNEANLAMIELSSNLLEGRVPK-SLASCTE 123 (212)
Q Consensus 50 ~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~ 123 (212)
..+++|++|++++|.+.+..+. .+++|++|++++|.+.. ..|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 5667777777777777654554 34566777777777764 3344566777888888888877753443 3667778
Q ss_pred ccEEEccCCCCCCcccCCc-ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCC
Q 042715 124 LKFLNLVSEGIFSSTLGNL-IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNP 201 (212)
Q Consensus 124 L~~L~l~~n~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~ 201 (212)
|+.|++++|.+.......+ ++|+.|++++|+++ .+|..+..+++|++|++++|++...++. ...+++++++++.+||
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 8888888887754333333 68999999999998 7888788999999999999999965554 4578999999999999
Q ss_pred CccCCCC
Q 042715 202 GLCGEPL 208 (212)
Q Consensus 202 ~~~~~~~ 208 (212)
+.|+|++
T Consensus 480 ~~c~c~~ 486 (520)
T 2z7x_B 480 WDCSCPR 486 (520)
T ss_dssp BCCCHHH
T ss_pred CcccCCc
Confidence 9999874
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=4.3e-24 Score=162.68 Aligned_cols=197 Identities=17% Similarity=0.145 Sum_probs=146.8
Q ss_pred eecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceEEcccc
Q 042715 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPIAASSN 84 (212)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l~l~~n 84 (212)
.++..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ ..+++|++|++++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 35555666666665555566778899999999999997777889999999999999999874332 35667889999988
Q ss_pred eeeeeCCC----------------cccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---ccc-CCccc
Q 042715 85 NFRGSIPQ----------------TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STL-GNLIV 144 (212)
Q Consensus 85 ~~~~~~~~----------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~-~~~~~ 144 (212)
.+....+. ....+++|++|++++|.+.+..+..++.+++|+.|++++|.+.. ..+ ..+++
T Consensus 91 ~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 91 YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp EEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 87642110 01124567777788887776556677778888888888887753 223 35788
Q ss_pred ccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715 145 LESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC 204 (212)
Q Consensus 145 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~ 204 (212)
|++|++++|.+++. +. ...+++|++|++++|.+.+.++....+++++.+++++|....
T Consensus 171 L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 171 LEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp CCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred CCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc
Confidence 88899998888754 32 335888999999999998777776688889999999997664
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=4.6e-23 Score=169.93 Aligned_cols=205 Identities=19% Similarity=0.199 Sum_probs=171.4
Q ss_pred CceeecEEEccCCccc--cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccCC
Q 042715 3 LCFDIIYIKLSGNQLT--GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGKL 76 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l 76 (212)
.+++|+.+++++|.+. +..+..+..+.+|+++++..+.+. ..+..+..+++|+.+++..+......+ ..+.++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence 4677888888888765 234556667888889988888777 345678889999999999887764333 345677
Q ss_pred ceEEcccceeeeeCCCcccCCCcccEEEccCCccc-ccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccC
Q 042715 77 KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE-GRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSN 152 (212)
Q Consensus 77 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~ 152 (212)
+.++++.|.+....+..+...+.++.|++++|.+. ...|..+..+++|+.|++++|.+. +..|.++++|++|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 89999999999888888889999999999999754 457788999999999999999874 46788999999999999
Q ss_pred CeeeeecChhccCCCCccEEEeeCCeeecCCCCCc-cc-ccccccccccCCCccCCCC
Q 042715 153 NKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-QF-NTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 153 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~-~~l~~l~l~~n~~~~~~~~ 208 (212)
|++++..+..+..+++|++|++++|++.+.+|... .+ ++++.+++++|||.|+|.+
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99998888899999999999999999998888754 44 6899999999999999975
No 50
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=7e-24 Score=172.48 Aligned_cols=195 Identities=21% Similarity=0.282 Sum_probs=163.4
Q ss_pred eeecEEEccCCccccccCccc-cccCCCceEEccCCeeeecC---CCCCCCCCCccEEEcccccceec-----CCccccC
Q 042715 5 FDIIYIKLSGNQLTGPIPYWL-ENLENISTLWLEKNQLTGCI---PFEIGNLKNLSTLCLEHKQLTGR-----IPSEIGK 75 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~-----~~~~l~~ 75 (212)
++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. ....+++
T Consensus 310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 46888888888887 666655 57999999999999988644 34578899999999999998632 2456788
Q ss_pred CceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCcccCCcccccEEEccCCee
Q 042715 76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKL 155 (212)
Q Consensus 76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i 155 (212)
|++|++++|.+. .+|..+..+++|++|++++|.+. .++..+ .++|+.|++++|.+... ...+++|++|++++|++
T Consensus 389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF-SLFLPRLQELYISRNKL 463 (549)
T ss_dssp CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCC-CCCCTTCCEEECCSSCC
T ss_pred CCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhh-cccCChhcEEECCCCcc
Confidence 999999999988 67788888899999999999988 444433 26899999999987653 46889999999999999
Q ss_pred eeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCC
Q 042715 156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~ 207 (212)
+ .+|. ...+++|++|++++|++.+.++. ...+++++.+++++||+.|+|+
T Consensus 464 ~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 464 K-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp S-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred C-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8 6776 46789999999999999988876 4588999999999999999997
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.3e-23 Score=155.69 Aligned_cols=187 Identities=21% Similarity=0.169 Sum_probs=158.0
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCc
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLK 77 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~ 77 (212)
|+++++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ ..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 4678999999999999997777789999999999999999998888899999999999999999874333 3456889
Q ss_pred eEEcccceeeee-CCCcccCCCcccEEEccCCcccccCCcccccCCccc----EEEccCCCCCC--cccCCcccccEEEc
Q 042715 78 PIAASSNNFRGS-IPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELK----FLNLVSEGIFS--STLGNLIVLESLDL 150 (212)
Q Consensus 78 ~l~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~--~~~~~~~~L~~L~l 150 (212)
+|++++|.+... +|..+..+++|++|++++|.+.+..+..+..+..++ .+++++|.+.. .......+|++|++
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L 207 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEEC
T ss_pred EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEEC
Confidence 999999998863 578899999999999999999976667777777776 89999998743 33334458999999
Q ss_pred cCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCc
Q 042715 151 SNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGK 187 (212)
Q Consensus 151 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 187 (212)
++|++++..+..+..+++|++|++++|++....+...
T Consensus 208 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 208 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp CSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred CCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 9999996666677899999999999999987766543
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=3.5e-24 Score=181.26 Aligned_cols=199 Identities=18% Similarity=0.165 Sum_probs=154.9
Q ss_pred CCCceeecEEEccCCcccc-----------------ccCcccc--ccCCCceEEccCCeeeecCCCCCCCCCCccEEEcc
Q 042715 1 ISLCFDIIYIKLSGNQLTG-----------------PIPYWLE--NLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLE 61 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 61 (212)
|+++++|++|++++|.+.+ .+|+.+. .+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 3568899999999999886 3788776 89999999999998888888889999999999999
Q ss_pred ccc-cee-cCCcc----------ccCCceEEcccceeeeeCCC--cccCCCcccEEEccCCcccccCCcccccCCcccEE
Q 042715 62 HKQ-LTG-RIPSE----------IGKLKPIAASSNNFRGSIPQ--TCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127 (212)
Q Consensus 62 ~~~-~~~-~~~~~----------l~~l~~l~l~~n~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 127 (212)
+|. +.+ .+|.. +++|++|++++|.+. .+|. .+..+++|+.|++++|.+. .+| .++.+++|+.|
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL 600 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence 997 765 45543 237889999999988 7777 7888889999999999888 777 78888899999
Q ss_pred EccCCCCC--CcccCCccc-ccEEEccCCeeeeecChhccCCCC--ccEEEeeCCeeecCCCCCc------ccccccccc
Q 042715 128 NLVSEGIF--SSTLGNLIV-LESLDLSNNKLSGQIPQQFGELTS--LEFFDVSDNLVIGPIPQGK------QFNTFETSS 196 (212)
Q Consensus 128 ~l~~n~~~--~~~~~~~~~-L~~L~l~~n~i~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~------~~~~l~~l~ 196 (212)
++++|.+. +..+..+++ |+.|++++|.+. .+|..+...+. |+.|++++|.+.+.+|... ..++++.|+
T Consensus 601 ~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp ECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred ECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 99998774 455777877 889999988887 67776666544 7788888887766554322 223555555
Q ss_pred cccCCCc
Q 042715 197 FDGNPGL 203 (212)
Q Consensus 197 l~~n~~~ 203 (212)
+.+|...
T Consensus 680 Ls~N~L~ 686 (876)
T 4ecn_A 680 LSYNEIQ 686 (876)
T ss_dssp CCSSCCC
T ss_pred ccCCcCC
Confidence 5555543
No 53
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.7e-23 Score=158.72 Aligned_cols=190 Identities=22% Similarity=0.274 Sum_probs=152.8
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEE
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIA 80 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~ 80 (212)
.+++|++|+++++.+. .++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+.. ++ ..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-chhhcCCCCCCEEE
Confidence 4678999999999887 455 57889999999999999885443 8899999999999998873 33 2456789999
Q ss_pred cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec
Q 042715 81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI 159 (212)
Q Consensus 81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~ 159 (212)
+++|.+... + .+..+++|++|++++|.+.+. +. ++.+++|+.|++++|.+.. ..+..+++|+.|++++|.+.+ +
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~ 188 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-I 188 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc-C
Confidence 999988753 2 378888999999999988843 33 7888999999999998754 337888999999999999984 3
Q ss_pred ChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715 160 PQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC 204 (212)
Q Consensus 160 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~ 204 (212)
+. +..+++|++|++++|++.+..+ ...+++++.+++.+|++.+
T Consensus 189 ~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred hh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 33 7888999999999999986664 5688889999999998765
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.8e-23 Score=160.95 Aligned_cols=190 Identities=24% Similarity=0.335 Sum_probs=119.4
Q ss_pred ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceEEcc
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPIAAS 82 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l~l~ 82 (212)
+++|++|+++++.+... +. +..+++|++|++++|.+....+ +..+++|+.+++++|.+.... ...+++|++|+++
T Consensus 154 l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDV-TP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG 229 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred CCCCcEEEecCCCcCCc-hh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEcc
Confidence 33444444444444311 11 4444555555555554442211 444555555555555544221 2334566777777
Q ss_pred cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecCh
Q 042715 83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQ 161 (212)
Q Consensus 83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~ 161 (212)
+|.+....+ +..+++|++|++++|.+.+ . ..+..+++|+.|++++|.+.. ..+..+++|++|++++|.+.+..+.
T Consensus 230 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 230 NNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred CCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChh
Confidence 777664322 6667778888888877763 3 356777788888888887654 4466778888888888888777777
Q ss_pred hccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCC
Q 042715 162 QFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPG 202 (212)
Q Consensus 162 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~ 202 (212)
.+..+++|++|++++|++.+..| ...+++++++++.+|+.
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred HhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 78888888888888888877666 56778888888888875
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=161.09 Aligned_cols=198 Identities=16% Similarity=0.101 Sum_probs=162.3
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc----cccCCceEE
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS----EIGKLKPIA 80 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~l~ 80 (212)
++|++|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++. .+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence 47999999999999666668999999999999999999888888999999999999999998 4443 456889999
Q ss_pred cccceeeeeCC-CcccCCCcccEEEccCC-cccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCee
Q 042715 81 ASSNNFRGSIP-QTCKNEANLAMIELSSN-LLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKL 155 (212)
Q Consensus 81 l~~n~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i 155 (212)
+++|.+..... ..+..+++|++|++++| .+....+..++.+++|+.|++++|.+. +..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999884333 36788999999999998 466566678889999999999999874 46788899999999999998
Q ss_pred eeecChhccCCCCccEEEeeCCeeecCCCCC--------------------------------cccccccccccccCCCc
Q 042715 156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQG--------------------------------KQFNTFETSSFDGNPGL 203 (212)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--------------------------------~~~~~l~~l~l~~n~~~ 203 (212)
.......+..+++|++|++++|.+.+..+.. ..+++++++++++|...
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 7333334456899999999999998654321 24678899999999766
No 56
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.3e-22 Score=151.25 Aligned_cols=179 Identities=24% Similarity=0.253 Sum_probs=152.7
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceE
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPI 79 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l 79 (212)
.+++|+.|+++++.+. .++ .+..+++|++|++++|.+.+ . ..+..+++|++|++++|.+.+..+ ..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 4678999999999987 343 47889999999999999884 2 478899999999999999985444 345678999
Q ss_pred EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeee
Q 042715 80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLS 156 (212)
Q Consensus 80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~ 156 (212)
++++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.. ..+..+++|++|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 999999987666678899999999999999996666678899999999999998754 34678999999999999999
Q ss_pred eecChhccCCCCccEEEeeCCeeecCCCC
Q 042715 157 GQIPQQFGELTSLEFFDVSDNLVIGPIPQ 185 (212)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 185 (212)
+..+..+..+++|++|++++|++.+..|.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 77777789999999999999999876654
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=2.6e-22 Score=170.78 Aligned_cols=111 Identities=20% Similarity=0.157 Sum_probs=65.4
Q ss_pred CCCceeecEEEccCCcccccc-CccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc-----ccc
Q 042715 1 ISLCFDIIYIKLSGNQLTGPI-PYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS-----EIG 74 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----~l~ 74 (212)
|+++++|++|++++|.....+ |..|..+++|++|++++|.+.+..|.+|..+++|++|++++|.+.+..+. .++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 345666666666666433233 55666666666666666666666666666666666666666666543322 344
Q ss_pred CCceEEcccceeeeeCC-CcccCCCcccEEEccCCccc
Q 042715 75 KLKPIAASSNNFRGSIP-QTCKNEANLAMIELSSNLLE 111 (212)
Q Consensus 75 ~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 111 (212)
+|++|++++|.+.+..+ ..++.+++|++|++++|.+.
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 55666666666654332 34556666666666665554
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=3.5e-22 Score=166.34 Aligned_cols=199 Identities=17% Similarity=0.170 Sum_probs=136.1
Q ss_pred eecEEEccCCccccccCccccccCCCceEEccCCeeeecCC-CCCCCCCCccEEEcccccceecCCc---cccCCceEEc
Q 042715 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP-FEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAA 81 (212)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l 81 (212)
+|+.|++++|.+.+..|..|..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+. .+++|++|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 34444445555554445556666666666666666554333 4555666666666666655533322 2345566666
Q ss_pred ccceee--eeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-----------cccCCcccccEE
Q 042715 82 SSNNFR--GSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-----------STLGNLIVLESL 148 (212)
Q Consensus 82 ~~n~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-----------~~~~~~~~L~~L 148 (212)
++|.+. +..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.. ..+.++++|+.|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 666654 2456667778888888888888886666678888889999998887642 126778889999
Q ss_pred EccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCcc
Q 042715 149 DLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLC 204 (212)
Q Consensus 149 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~ 204 (212)
++++|++....+..+..+++|++|++++|.+.+.++.. ..+++++.+++.+|....
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 99999988444456888999999999999998666654 377889999999986543
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2e-23 Score=176.68 Aligned_cols=181 Identities=20% Similarity=0.285 Sum_probs=154.5
Q ss_pred cCccccccCCCceEEccCCeeee-----------------cCCCCCC--CCCCccEEEcccccceecCCccc---cCCce
Q 042715 21 IPYWLENLENISTLWLEKNQLTG-----------------CIPFEIG--NLKNLSTLCLEHKQLTGRIPSEI---GKLKP 78 (212)
Q Consensus 21 ~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l---~~l~~ 78 (212)
+|..|..+++|++|++++|.+++ .+|..+. .+++|++|++++|.+.+.+|..+ ++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999997 3888887 99999999999999888888654 57799
Q ss_pred EEcccce-eee-eCCCcccCC-------CcccEEEccCCcccccCCc--ccccCCcccEEEccCCCCCC-cccCCccccc
Q 042715 79 IAASSNN-FRG-SIPQTCKNE-------ANLAMIELSSNLLEGRVPK--SLASCTELKFLNLVSEGIFS-STLGNLIVLE 146 (212)
Q Consensus 79 l~l~~n~-~~~-~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~ 146 (212)
|++++|. +++ .+|..++.+ ++|+.|++++|.+. .+|. .++.+++|+.|++++|.+.. ..+..+++|+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~ 598 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT 598 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEES
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcce
Confidence 9999998 776 566655544 49999999999999 8888 89999999999999998743 2678899999
Q ss_pred EEEccCCeeeeecChhccCCCC-ccEEEeeCCeeecCCCCCc-cc--ccccccccccCCCcc
Q 042715 147 SLDLSNNKLSGQIPQQFGELTS-LEFFDVSDNLVIGPIPQGK-QF--NTFETSSFDGNPGLC 204 (212)
Q Consensus 147 ~L~l~~n~i~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~-~~--~~l~~l~l~~n~~~~ 204 (212)
.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|... .. ++++.+++++|....
T Consensus 599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred EEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence 9999999998 88988999999 999999999998 444433 33 349999999998654
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=166.07 Aligned_cols=204 Identities=18% Similarity=0.170 Sum_probs=171.6
Q ss_pred CCceeecEEEccCCcccccc--CccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC----ccccC
Q 042715 2 SLCFDIIYIKLSGNQLTGPI--PYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP----SEIGK 75 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~ 75 (212)
..+++|++|++++|.+.... +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 46789999999999988443 67788999999999999999865554 8899999999999999885443 34578
Q ss_pred CceEEcccceeeeeCCCcccCCCcccEEEccCCccc-ccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEcc
Q 042715 76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE-GRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLS 151 (212)
Q Consensus 76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~ 151 (212)
|++|++++|.+....+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|.+. +..+..+++|++|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 899999999999888888999999999999999987 468889999999999999999874 4678899999999999
Q ss_pred CCeeeeecChhccCCCCccEEEeeCCeeecCCCCCccc-ccccc--cccccCCCccCCC
Q 042715 152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQF-NTFET--SSFDGNPGLCGEP 207 (212)
Q Consensus 152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~l~~--l~l~~n~~~~~~~ 207 (212)
+|++++..+..+..+++|++|++++|++.+..|....+ .+++. ..+.+.+ .|..|
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence 99999777788999999999999999999888775544 22222 3456666 77654
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.9e-23 Score=157.67 Aligned_cols=195 Identities=19% Similarity=0.199 Sum_probs=149.9
Q ss_pred ceeecEEEccCCccccccCccc--cccCCCceEEccCCeeeecCC----CCCCCCCCccEEEcccccceecCCc---ccc
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWL--ENLENISTLWLEKNQLTGCIP----FEIGNLKNLSTLCLEHKQLTGRIPS---EIG 74 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~---~l~ 74 (212)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+. .++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3568999999999888888877 889999999999998885433 2345688999999999988754444 456
Q ss_pred CCceEEcccceeeee--C--CCcccCCCcccEEEccCCcccccCCc----ccccCCcccEEEccCCCCCC---cccCCc-
Q 042715 75 KLKPIAASSNNFRGS--I--PQTCKNEANLAMIELSSNLLEGRVPK----SLASCTELKFLNLVSEGIFS---STLGNL- 142 (212)
Q Consensus 75 ~l~~l~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~---~~~~~~- 142 (212)
+|++|++++|.+.+. + +..+..+++|++|++++|.++ ..+. .++.+++|++|++++|.+.. ..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 789999999986531 1 233467788999999999886 3332 24677899999999998743 335554
Q ss_pred --ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715 143 --IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203 (212)
Q Consensus 143 --~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~ 203 (212)
++|++|++++|+++ .+|..+. ++|++|++++|++.+. |....+++++.+++++|++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 68999999999998 6676653 7899999999999865 44567889999999999875
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.7e-22 Score=149.13 Aligned_cols=172 Identities=26% Similarity=0.246 Sum_probs=151.2
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAA 81 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l 81 (212)
++++.|++++|.+....+..|..+++|++|++++|.++...+. ..+++|++|++++|.+. .+|. .+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 5789999999999977788999999999999999999865443 78999999999999998 5554 4567899999
Q ss_pred ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeee
Q 042715 82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQ 158 (212)
Q Consensus 82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~ 158 (212)
++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+++|++|++++|++. .
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 9999997666789999999999999999997666778899999999999998854 44678999999999999998 7
Q ss_pred cChhccCCCCccEEEeeCCeee
Q 042715 159 IPQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~n~~~ 180 (212)
+|..+...++|+.+++++|++.
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBC
T ss_pred cChhhcccccCCeEEeCCCCcc
Confidence 8888888899999999999875
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=7e-23 Score=155.65 Aligned_cols=175 Identities=22% Similarity=0.249 Sum_probs=146.3
Q ss_pred CCceeecEEEccCCccccccCcccccc-----CCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceec-------C
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENL-----ENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGR-------I 69 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------~ 69 (212)
+.+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6789999999999999966 8888887 9999999999999988889999999999999999986532 2
Q ss_pred CccccCCceEEcccceeee--eC-CCcccCCCcccEEEccCCcccccCC-cccccCCcccEEEccCCCCCC--cccCCcc
Q 042715 70 PSEIGKLKPIAASSNNFRG--SI-PQTCKNEANLAMIELSSNLLEGRVP-KSLASCTELKFLNLVSEGIFS--STLGNLI 143 (212)
Q Consensus 70 ~~~l~~l~~l~l~~n~~~~--~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~--~~~~~~~ 143 (212)
+..+++|++|++++|.+.. .. ...+..+++|++|++++|.+.+..| ..+..+++|+.|++++|.+.. ..+. +
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~ 274 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A 274 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence 3567889999999999873 11 1334567899999999999986554 456678999999999998854 3333 7
Q ss_pred cccEEEccCCeeeeecChhccCCCCccEEEeeCCeeec
Q 042715 144 VLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG 181 (212)
Q Consensus 144 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 181 (212)
+|++|++++|++++. |. +..+++|++|++++|++.+
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 899999999999854 66 8899999999999998864
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=3.8e-22 Score=164.09 Aligned_cols=182 Identities=20% Similarity=0.236 Sum_probs=160.0
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCC-CCCCCCCCccEEEcccccceecCCcc---ccCCc
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP-FEIGNLKNLSTLCLEHKQLTGRIPSE---IGKLK 77 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~ 77 (212)
..+++|++|++++|.+. .+|..|..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+.. +++|+
T Consensus 373 ~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp HCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 46789999999999988 577889999999999999999997766 68899999999999999998766654 46789
Q ss_pred eEEcccceeee-eCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCC
Q 042715 78 PIAASSNNFRG-SIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNN 153 (212)
Q Consensus 78 ~l~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n 153 (212)
+|++++|.+.+ ..+..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+. +..+..+++|+.|++++|
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 99999999987 46888999999999999999999888888999999999999999875 467889999999999999
Q ss_pred eeeeecChhccCCC-CccEEEeeCCeeecCCCC
Q 042715 154 KLSGQIPQQFGELT-SLEFFDVSDNLVIGPIPQ 185 (212)
Q Consensus 154 ~i~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~ 185 (212)
+++ .+|..+..++ +|++|++++|++....+.
T Consensus 532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 998 6676688887 599999999999765443
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.1e-21 Score=161.75 Aligned_cols=67 Identities=25% Similarity=0.294 Sum_probs=44.3
Q ss_pred cCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccC
Q 042715 139 LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCG 205 (212)
Q Consensus 139 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~ 205 (212)
+..+++|++|+|++|++.+..|.+|.++++|++|+|++|++.+.++.. ..+++++.|++++|....-
T Consensus 490 ~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred hhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence 344556677777777776666667777777777777777776655543 3566777777777765543
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=163.30 Aligned_cols=81 Identities=20% Similarity=0.143 Sum_probs=48.8
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccccee-cCCcc---ccCCc
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG-RIPSE---IGKLK 77 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~---l~~l~ 77 (212)
+++++|++|++++|.+.+..|+.|..+++|++|++++|.++. +|.. .+++|++|++++|.+.+ .+|.. +++|+
T Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence 456777777777777776666677777777777777777663 3332 56666666666666553 22322 23444
Q ss_pred eEEcccce
Q 042715 78 PIAASSNN 85 (212)
Q Consensus 78 ~l~l~~n~ 85 (212)
+|++++|.
T Consensus 119 ~L~L~~n~ 126 (520)
T 2z7x_B 119 FLGLSTTH 126 (520)
T ss_dssp EEEEEESS
T ss_pred EEEecCcc
Confidence 45544443
No 67
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=8.5e-22 Score=160.79 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=83.3
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSN 84 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n 84 (212)
++|++|++++|.+.+..+..|..+++|++|++++|.+++..|++|..+++|++|++++|.++......+++|++|++++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N 131 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFN 131 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 57888888888888666678888888888888888888777888888888888888888887322235667888888888
Q ss_pred eeee-eCCCcccCCCcccEEEccCCccc
Q 042715 85 NFRG-SIPQTCKNEANLAMIELSSNLLE 111 (212)
Q Consensus 85 ~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 111 (212)
.+.. ..|..+..+++|++|++++|.+.
T Consensus 132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CccccCchHhhcccCcccEEecCCCccc
Confidence 8775 23467777788888888877665
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.9e-21 Score=154.86 Aligned_cols=186 Identities=17% Similarity=0.223 Sum_probs=87.6
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcc
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAAS 82 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~ 82 (212)
++++|++|+++++.+.+ +| .+..+++|++|++++|.+++. + +..+++|++|++++|.+.+.....+++|++|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceeecCCCCcCCEEECC
Confidence 34556666666666653 23 355566666666666665532 2 4555555566655555553322334445555555
Q ss_pred cceeeeeCCCcccCCCcccEEEccCCcccccCC--------------------cccccCCcccEEEccCCCCCCcccCCc
Q 042715 83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP--------------------KSLASCTELKFLNLVSEGIFSSTLGNL 142 (212)
Q Consensus 83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~ 142 (212)
+|.+.. ++ +..+++|++|++++|.+++ .+ ..++.+++|+.|++++|.+....+..+
T Consensus 115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l 190 (457)
T 3bz5_A 115 TNKLTK-LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQN 190 (457)
T ss_dssp SSCCSC-CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTC
T ss_pred CCcCCe-ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccC
Confidence 555443 11 4444444555554444442 11 012233344444444443333233444
Q ss_pred ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCC
Q 042715 143 IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPG 202 (212)
Q Consensus 143 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~ 202 (212)
++|+.|++++|.+++. .+..+++|++|++++|++.+ +| ...+++++.+++.+|..
T Consensus 191 ~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCC
T ss_pred CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcC
Confidence 4444444444444421 14444555555555555544 22 33445555555555543
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.1e-21 Score=144.71 Aligned_cols=154 Identities=20% Similarity=0.214 Sum_probs=135.0
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAA 81 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l 81 (212)
+++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+ ..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 568999999999998888889999999999999999998888889999999999999999984433 34568899999
Q ss_pred ccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeee
Q 042715 82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQ 158 (212)
Q Consensus 82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~ 158 (212)
++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.. ..+..+++|+.|++++|.+...
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999986666667889999999999999996666678999999999999998754 4577899999999999999754
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=4.2e-22 Score=162.01 Aligned_cols=196 Identities=17% Similarity=0.163 Sum_probs=151.5
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCc---cccCCceEEc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAA 81 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l 81 (212)
++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+.+|..+++|++|++++|.+.+..+. .+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4789999999999877788899999999999999999988888899999999999999998854433 4567899999
Q ss_pred ccceeee-eCCCcccCCCcccEEEccCCc-ccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeee
Q 042715 82 SSNNFRG-SIPQTCKNEANLAMIELSSNL-LEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLS 156 (212)
Q Consensus 82 ~~n~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~ 156 (212)
++|.+.. ..+..+..+++|++|++++|. +....+..++.+++|++|++++|.+. +..+..+++|++|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9998875 345678888999999999997 44333467888999999999998773 466778888888888888876
Q ss_pred eecChh-ccCCCCccEEEeeCCeeecCC----CCCcccccccccccccCC
Q 042715 157 GQIPQQ-FGELTSLEFFDVSDNLVIGPI----PQGKQFNTFETSSFDGNP 201 (212)
Q Consensus 157 ~~~~~~-~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~l~~l~l~~n~ 201 (212)
.++.. +..+++|++|++++|.+.+.. +.....+.++.+.+.+|.
T Consensus 186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 44443 356888899999998887642 212234455555555543
No 71
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=1.2e-21 Score=141.62 Aligned_cols=134 Identities=22% Similarity=0.272 Sum_probs=99.2
Q ss_pred CCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEcc
Q 042715 75 KLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLS 151 (212)
Q Consensus 75 ~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~ 151 (212)
.+++|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.. ..+.++++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 34555555555554444566677778888888887776667777778888888888887643 335677888888888
Q ss_pred CCeeeeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCCC
Q 042715 152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
+|++.+..+..+..+++|++|++++|.+.+..+. ...+++++.+++.+||+.|+|.+
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 8888877777888888888888888888876665 34677888888888888888864
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.1e-22 Score=163.29 Aligned_cols=203 Identities=19% Similarity=0.179 Sum_probs=159.3
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCC----------------CCCCCCCccEEEccccc
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPF----------------EIGNLKNLSTLCLEHKQ 64 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------------~~~~l~~L~~L~l~~~~ 64 (212)
|+++++|++|++++|.+.+..| |..+++|++|++++|.+++..+. ....+++|+.|++++|.
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~ 131 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSC
T ss_pred HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCC
Confidence 3567888999999988875444 78888888888888877643221 01235788899999998
Q ss_pred ceecCCc---cccCCceEEcccceeeeeCCCccc-CCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--Ccc
Q 042715 65 LTGRIPS---EIGKLKPIAASSNNFRGSIPQTCK-NEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SST 138 (212)
Q Consensus 65 ~~~~~~~---~l~~l~~l~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~ 138 (212)
+.+..+. .+++|++|++++|.+++..+..+. .+++|++|++++|.+.+.. ....+++|+.|++++|.+. +..
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~ 209 (487)
T 3oja_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE 209 (487)
T ss_dssp CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh
Confidence 8855443 456789999999999987777665 7899999999999998553 2346899999999999884 356
Q ss_pred cCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee-cCCCC-Ccccccccccccc-------cCCCccCCCC
Q 042715 139 LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI-GPIPQ-GKQFNTFETSSFD-------GNPGLCGEPL 208 (212)
Q Consensus 139 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~-~~~~~~l~~l~l~-------~n~~~~~~~~ 208 (212)
+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. +.+|. ...++.++.+.+. +++..|.++.
T Consensus 210 ~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 788999999999999998 57888899999999999999997 33332 3366777778876 8999998874
No 73
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=6.5e-22 Score=158.08 Aligned_cols=194 Identities=23% Similarity=0.324 Sum_probs=116.7
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCC--------------------CCCCCCCCccEEEcc
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP--------------------FEIGNLKNLSTLCLE 61 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------~~~~~l~~L~~L~l~ 61 (212)
+++++|++|++++|.+.. + ..+..+++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 174 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp TTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred ccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence 345566666666665542 2 224555555555555555443222 133444555555555
Q ss_pred cccceecCC-ccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-ccc
Q 042715 62 HKQLTGRIP-SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STL 139 (212)
Q Consensus 62 ~~~~~~~~~-~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~ 139 (212)
+|.+.+..+ ..+++|++|++++|.+....+ +..+++|+.|++++|.+.+.. .++.+++|+.|++++|.+.. ..+
T Consensus 252 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~ 327 (466)
T 1o6v_A 252 NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISPV 327 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGGG
T ss_pred CCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCchhh
Confidence 554442211 233455666666665553222 555666777777776666332 25667777777777776643 335
Q ss_pred CCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715 140 GNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC 204 (212)
Q Consensus 140 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~ 204 (212)
..+++|+.|++++|.+.+. ..+..+++|+.|++++|++.+..| ...+++++.+++.+|++..
T Consensus 328 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 6777788888888877643 457778888888888888877766 5677888888888887765
No 74
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=8.2e-22 Score=151.73 Aligned_cols=200 Identities=17% Similarity=0.226 Sum_probs=124.5
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceE
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPI 79 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l 79 (212)
|+++++|++|++++|.+.. .+. +..+++|++|++++|..... ...+..+++|++|++++|.+.... ...+++|++|
T Consensus 106 ~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 182 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSL 182 (347)
T ss_dssp GTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred HcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchhhccCCCCCEE
Confidence 3567788888888887773 333 66777777777777744422 223566666666666666554211 1234445555
Q ss_pred EcccceeeeeCC--------------------CcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cc
Q 042715 80 AASSNNFRGSIP--------------------QTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-ST 138 (212)
Q Consensus 80 ~l~~n~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~ 138 (212)
++++|.+....+ ..+..+++|++|++++|.+.+ .+. +..+++|+.|++++|.+.. ..
T Consensus 183 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~ 260 (347)
T 4fmz_A 183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDINA 260 (347)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred EccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCChh
Confidence 555554432111 114555667777777776663 222 6667777777777776644 44
Q ss_pred cCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCC
Q 042715 139 LGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 139 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~ 207 (212)
+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+.. ..+++++++++++|+.....+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred HhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 6677777778888777763 3 34677778888888888776655442 367778888888887665544
No 75
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=6.9e-21 Score=151.66 Aligned_cols=168 Identities=24% Similarity=0.229 Sum_probs=110.2
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccccee---------------
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG--------------- 67 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------- 67 (212)
.+++|++|++++|.+.+ +| +..+++|++|++++|.+++. + +..+++|++|++++|.+.+
T Consensus 62 ~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCA 135 (457)
T ss_dssp GCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred ccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECC
Confidence 44555555555555553 22 44555555555555555432 1 4445555555555554442
Q ss_pred ------cCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCcccCC
Q 042715 68 ------RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSSTLGN 141 (212)
Q Consensus 68 ------~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 141 (212)
.....+++|++|++++|...+.+ .+..+++|++|++++|.+++ +| ++.+++|+.|++++|.+....+..
T Consensus 136 ~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~ 210 (457)
T 3bz5_A 136 RNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQ 210 (457)
T ss_dssp TSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTT
T ss_pred CCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeecccc
Confidence 21223334445555544322222 35667788888888888884 44 778899999999999887777889
Q ss_pred cccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCC
Q 042715 142 LIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184 (212)
Q Consensus 142 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 184 (212)
+++|++|++++|++++ +| +..+++|++|++++|++.+.++
T Consensus 211 l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 9999999999999985 56 7788999999999999987653
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.6e-21 Score=147.84 Aligned_cols=171 Identities=23% Similarity=0.315 Sum_probs=144.6
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceE
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPI 79 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l 79 (212)
+.+++|++|++++|.+.. .+. +..+++|++|++++|.+.. . ..+..+++|++|++++|.+.. ++ ..+++|++|
T Consensus 60 ~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L 134 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD-VTPLAGLSNLQVL 134 (308)
T ss_dssp GGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC-CGGGTTCTTCCEE
T ss_pred hccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCC-chhhcCCCCCCEE
Confidence 568899999999999984 444 8999999999999999884 3 368899999999999999873 33 356788999
Q ss_pred EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeee
Q 042715 80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQ 158 (212)
Q Consensus 80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~ 158 (212)
++++|.+....+ +..+++|++|++++|.+.+ .+. +..+++|+.|++++|.+.. ..+..+++|++|++++|.+.+.
T Consensus 135 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBC
T ss_pred ECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcc
Confidence 999999875432 7888999999999999984 443 8899999999999998854 3478899999999999999854
Q ss_pred cChhccCCCCccEEEeeCCeeecCC
Q 042715 159 IPQQFGELTSLEFFDVSDNLVIGPI 183 (212)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~n~~~~~~ 183 (212)
. .+..+++|++|++++|++.+.+
T Consensus 211 ~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 211 S--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp G--GGTTCTTCCEEEEEEEEEECCC
T ss_pred c--cccCCCCCCEEEccCCeeecCC
Confidence 4 3889999999999999998643
No 77
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=2.3e-21 Score=154.94 Aligned_cols=188 Identities=23% Similarity=0.328 Sum_probs=110.7
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceE
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPI 79 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l 79 (212)
++++++|++|++++ .+. ..+ .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ ..+++|++|
T Consensus 152 ~~~l~~L~~L~l~~-~~~-~~~-~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 226 (466)
T 1o6v_A 152 LSGLTSLQQLSFGN-QVT-DLK-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDEL 226 (466)
T ss_dssp GTTCTTCSEEEEEE-SCC-CCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred hccCCcccEeecCC-ccc-Cch-hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEE
Confidence 35788999999974 444 233 388999999999999998843 357889999999999998874333 345667777
Q ss_pred EcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeee
Q 042715 80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQ 158 (212)
Q Consensus 80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~ 158 (212)
++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.. ..+..+++|+.|++++|++.+.
T Consensus 227 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ 302 (466)
T 1o6v_A 227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 302 (466)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC
T ss_pred ECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCc
Confidence 7777776532 245555666666666666653322 4555556666665554432 2244444555555555544422
Q ss_pred cChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccC
Q 042715 159 IPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGN 200 (212)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n 200 (212)
.+ +..+++|++|++++|.+.+..+ ...+++++++++.+|
T Consensus 303 ~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 303 SP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp GG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred hh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence 11 3344444444444444443332 223333444444333
No 78
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=2.1e-21 Score=150.37 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=96.2
Q ss_pred cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEc
Q 042715 74 GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDL 150 (212)
Q Consensus 74 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l 150 (212)
++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. +..+..+++|++|+|
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 34444555555544444556777788888888888887666667788888888888888774 356778888999999
Q ss_pred cCCeeeeecChhc---cCCCCccEEEeeCCeeecCCCCC-ccccc--ccccccccCCCccCCCC
Q 042715 151 SNNKLSGQIPQQF---GELTSLEFFDVSDNLVIGPIPQG-KQFNT--FETSSFDGNPGLCGEPL 208 (212)
Q Consensus 151 ~~n~i~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~-~~~~~--l~~l~l~~n~~~~~~~~ 208 (212)
++|.+.+..+..+ ..+++|++|+|++|.+.+.++.. ..++. ++.+++.+||+.|+|.+
T Consensus 144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 9999884333344 56889999999999988654332 24444 47899999999999864
No 79
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=138.86 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=76.2
Q ss_pred ceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCccc
Q 042715 32 STLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE 111 (212)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 111 (212)
+.++++++.++ .+|..+ .+.+++|++++|.+....+ ...+..+++|++|++++|.+.
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~--------------------~~~~~~l~~L~~L~L~~N~i~ 70 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEA--------------------TGIFKKLPQLRKINFSNNKIT 70 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECC--------------------CCCGGGCTTCCEEECCSSCCC
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCc--------------------hhhhccCCCCCEEECCCCcCC
Confidence 46666666665 334332 2334566666666553222 122344445555555555554
Q ss_pred ccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-Cc
Q 042715 112 GRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GK 187 (212)
Q Consensus 112 ~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~ 187 (212)
+..+..+..+++|+.|++++|.+.. ..+.++++|++|++++|++.+..|..+..+++|++|++++|.+.+..|. ..
T Consensus 71 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 71 DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 3333344555555555555554422 2244455555555555555544455555555555555555555544332 22
Q ss_pred ccccccccccccCCCccCCC
Q 042715 188 QFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 188 ~~~~l~~l~l~~n~~~~~~~ 207 (212)
.+++++.+++.+||+.|+|+
T Consensus 151 ~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 151 TLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TCTTCCEEECCSCCEECSGG
T ss_pred CCCCCCEEEecCcCCcCCCc
Confidence 45555555555555555554
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=7.1e-22 Score=149.99 Aligned_cols=177 Identities=19% Similarity=0.198 Sum_probs=144.3
Q ss_pred CCceeecEEEccCCccccccC----ccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccccee-------cCC
Q 042715 2 SLCFDIIYIKLSGNQLTGPIP----YWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTG-------RIP 70 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~ 70 (212)
+.+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ...
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 568999999999999986544 344579999999999999998888899999999999999998653 223
Q ss_pred ccccCCceEEcccceeeeeCCC----cccCCCcccEEEccCCcccccCCcccccC---CcccEEEccCCCCCCcccCCcc
Q 042715 71 SEIGKLKPIAASSNNFRGSIPQ----TCKNEANLAMIELSSNLLEGRVPKSLASC---TELKFLNLVSEGIFSSTLGNLI 143 (212)
Q Consensus 71 ~~l~~l~~l~l~~n~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~ 143 (212)
..+++|++|++++|.++. ++. .+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.+....-.-.+
T Consensus 194 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 272 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA 272 (310)
T ss_dssp TSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCS
T ss_pred hcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcC
Confidence 567889999999999862 222 24677899999999999997767777666 6999999999988643222347
Q ss_pred cccEEEccCCeeeeecChhccCCCCccEEEeeCCeeec
Q 042715 144 VLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG 181 (212)
Q Consensus 144 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 181 (212)
+|++|++++|++++ +|. +..+++|+.|++++|++..
T Consensus 273 ~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 273 KLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 99999999999984 454 6788999999999998863
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=6.5e-21 Score=139.47 Aligned_cols=173 Identities=17% Similarity=0.147 Sum_probs=143.5
Q ss_pred CCCceeecEEEccCCc-cccccCccccccCCCceEEccC-CeeeecCCCCCCCCCCccEEEcccccceecCCc--cccCC
Q 042715 1 ISLCFDIIYIKLSGNQ-LTGPIPYWLENLENISTLWLEK-NQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPS--EIGKL 76 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l 76 (212)
|+++++|++|++++|. +....+..|..+++|++|++++ |.++...+..|..+++|++|++++|.+. .+|. .+.++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~~~~l~~L 129 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYST 129 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCCCTTCCBC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-ccccccccccc
Confidence 4678999999999997 8866666899999999999998 9999878888999999999999999988 4554 44556
Q ss_pred c---eEEcccc-eeeeeCCCcccCCCccc-EEEccCCcccccCCcccccCCcccEEEccCCC-CC---CcccCCc-cccc
Q 042715 77 K---PIAASSN-NFRGSIPQTCKNEANLA-MIELSSNLLEGRVPKSLASCTELKFLNLVSEG-IF---SSTLGNL-IVLE 146 (212)
Q Consensus 77 ~---~l~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~---~~~~~~~-~~L~ 146 (212)
+ +|++++| .+....+..+..+++|+ +|++++|.+. .+|......++|+.|++++|+ +. +..+.++ ++|+
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 6 9999999 88876667789999999 9999999998 444433333899999999995 53 3567888 9999
Q ss_pred EEEccCCeeeeecChhccCCCCccEEEeeCCe
Q 042715 147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178 (212)
Q Consensus 147 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 178 (212)
.|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 209 ~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 209 LLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred EEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 9999999998 55543 67889999998774
No 82
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=2.2e-20 Score=135.85 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=106.8
Q ss_pred ccEEEcccccceecCCccc-cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC
Q 042715 55 LSTLCLEHKQLTGRIPSEI-GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG 133 (212)
Q Consensus 55 L~~L~l~~~~~~~~~~~~l-~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 133 (212)
.+.++.+++.+. .+|..+ +++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcC-ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 334444444444 333332 345556666666555555667777788888888888875555566778888888888887
Q ss_pred CCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-CcccccccccccccCCCccCCC
Q 042715 134 IFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 134 ~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~ 207 (212)
+.. ..+..+++|++|++++|++. .+|..+..+++|++|++++|.+.+..+. ...+++++.+++.+||+.|+|+
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 643 34667888888888888887 6777788888888888888888866654 3467888888888888888875
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=4.2e-20 Score=139.01 Aligned_cols=170 Identities=24% Similarity=0.333 Sum_probs=140.6
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEE
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIA 80 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~ 80 (212)
.+++|++|+++++.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. ++ ..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEE
Confidence 4678999999999988 444 47889999999999999985444 8899999999999998873 33 3456789999
Q ss_pred cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec
Q 042715 81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI 159 (212)
Q Consensus 81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~ 159 (212)
+++|.+... ..+..+++|++|++++|.+.+. ..++.+++|+.|++++|.+.. ..+..+++|++|++++|.+++ +
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~-l 193 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-L 193 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-C
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC-C
Confidence 999998753 4677889999999999999843 578889999999999998754 347889999999999999984 4
Q ss_pred ChhccCCCCccEEEeeCCeeecCC
Q 042715 160 PQQFGELTSLEFFDVSDNLVIGPI 183 (212)
Q Consensus 160 ~~~~~~~~~L~~L~l~~n~~~~~~ 183 (212)
+ .+..+++|+.|++++|++....
T Consensus 194 ~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 194 R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred h-hhccCCCCCEEECcCCcccCCc
Confidence 4 4889999999999999987543
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.1e-19 Score=149.23 Aligned_cols=77 Identities=22% Similarity=0.162 Sum_probs=50.1
Q ss_pred CcccEEEccCCCCCCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCC
Q 042715 122 TELKFLNLVSEGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNP 201 (212)
Q Consensus 122 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~ 201 (212)
++|+.|++++|.+.... ..+++|+.|++++|.++ .+|. .+++|++|++++|.+...++....+++++.+++.+|+
T Consensus 221 ~~L~~L~Ls~N~L~~lp-~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP-VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCEEEccCCccCcCC-CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 44555566655554322 44566777777777776 4454 4577788888888877544444577788888888887
Q ss_pred Cc
Q 042715 202 GL 203 (212)
Q Consensus 202 ~~ 203 (212)
+.
T Consensus 296 l~ 297 (622)
T 3g06_A 296 LS 297 (622)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 85
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=9e-20 Score=131.82 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=94.1
Q ss_pred cEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceee
Q 042715 8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFR 87 (212)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~ 87 (212)
+.++.+++.+. .+|..+. +++++|++++|.+....+..|..+++|++|++++|.+...
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~------------------- 71 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL------------------- 71 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-------------------
Confidence 45677777766 5555443 5778888888877766666777777777777777777633
Q ss_pred eeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhcc
Q 042715 88 GSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFG 164 (212)
Q Consensus 88 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 164 (212)
.+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. +..+..+++|++|++++|.+.+..+..+.
T Consensus 72 --~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 72 --APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp --CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred --CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 3344455556666666666665333344555666666666666553 24455666666666666666655555566
Q ss_pred CCCCccEEEeeCCeee
Q 042715 165 ELTSLEFFDVSDNLVI 180 (212)
Q Consensus 165 ~~~~L~~L~l~~n~~~ 180 (212)
.+++|++|++++|++.
T Consensus 150 ~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred CCCCCCEEEeCCCCcC
Confidence 6666777777777664
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=2e-20 Score=134.13 Aligned_cols=170 Identities=18% Similarity=0.169 Sum_probs=134.3
Q ss_pred cEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEcccc
Q 042715 8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAASSN 84 (212)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l~~n 84 (212)
+.++.+++.+. .+|..+ .++|++|++++|.++...+..|..+++|++|++++|.+....+ ..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56777777776 455443 4689999999999887777778889999999999998874333 24567899999999
Q ss_pred eeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecCh
Q 042715 85 NFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQ 161 (212)
Q Consensus 85 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~ 161 (212)
.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 8886555667888999999999999986666668889999999999997743 346788999999999997753
Q ss_pred hccCCCCccEEEeeCCeeecCCCCCc
Q 042715 162 QFGELTSLEFFDVSDNLVIGPIPQGK 187 (212)
Q Consensus 162 ~~~~~~~L~~L~l~~n~~~~~~~~~~ 187 (212)
.++.++.|+++.|.+.+.+|...
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred ---CCCCHHHHHHHHHhCCceeeccC
Confidence 45678999999999998887643
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.1e-19 Score=147.58 Aligned_cols=177 Identities=23% Similarity=0.268 Sum_probs=134.6
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcccc-CCceEEccc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIG-KLKPIAASS 83 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~l~l~~ 83 (212)
.+++.|+++++.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. ++ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCS
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCC
Confidence 378899999999884 66654 378999999999988 455 457889999999998884 666 54 788999999
Q ss_pred ceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCcc-cCCcccccEEEccCCeeeeecChh
Q 042715 84 NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSST-LGNLIVLESLDLSNNKLSGQIPQQ 162 (212)
Q Consensus 84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~ 162 (212)
|.++. +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+.... +. ++|+.|++++|+|+ .+|.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS-SCCC-
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCC-chhh-
Confidence 98875 554 56788999999998884 554 4678899999998764311 33 78889999999887 6666
Q ss_pred ccCCCCc-------cEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715 163 FGELTSL-------EFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC 204 (212)
Q Consensus 163 ~~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~ 204 (212)
+.. +| ++|++++|.+...++....+++++.+++.+|++.+
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 444 67 88999999888655545578888888998888754
No 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=7.7e-20 Score=132.15 Aligned_cols=151 Identities=23% Similarity=0.236 Sum_probs=106.6
Q ss_pred cEEEccCCccccccCccccccCCCceEEccCCeeeecCC-CCCCCCCCccEEEcccccceecCCccccCCceEEccccee
Q 042715 8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP-FEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNF 86 (212)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~ 86 (212)
+.++++++.+. .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.++...
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~----------------- 73 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE----------------- 73 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-----------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-----------------
Confidence 58999999988 5676553 467999999999997644 55788999999999999887322
Q ss_pred eeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhc
Q 042715 87 RGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQF 163 (212)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 163 (212)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..+.++++|++|++++|++++..|..+
T Consensus 74 ----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 74 ----EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp ----TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred ----HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 234455566666666666666555555666666777777666653 3455666777777777777776556777
Q ss_pred cCCCCccEEEeeCCeeecC
Q 042715 164 GELTSLEFFDVSDNLVIGP 182 (212)
Q Consensus 164 ~~~~~L~~L~l~~n~~~~~ 182 (212)
..+++|++|++++|++...
T Consensus 150 ~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTCTTCCEEECCSCCEECS
T ss_pred cCCCCCCEEEecCcCCcCC
Confidence 7777777777777777643
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=6.5e-20 Score=130.36 Aligned_cols=151 Identities=13% Similarity=0.198 Sum_probs=94.9
Q ss_pred ccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEEcccceeeeeCCCcccCCCcccE
Q 042715 25 LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAASSNNFRGSIPQTCKNEANLAM 102 (212)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~ 102 (212)
...+++|++|+++++.+. ..+ .+..+++|++|++++|.+. .++ ..+++|++|++++|.+....+..+..+++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 356778888888888877 444 5777888888888887554 221 23345556666666555444556666677777
Q ss_pred EEccCCcccccCCcccccCCcccEEEccCCC-CCC-cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeee
Q 042715 103 IELSSNLLEGRVPKSLASCTELKFLNLVSEG-IFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 103 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 180 (212)
|++++|.+.+..+..++.+++|+.|++++|. +.. ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|++.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 7777777665555566666677777777765 322 345566667777777776663 33 4566666777777776654
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1.5e-22 Score=158.06 Aligned_cols=204 Identities=19% Similarity=0.181 Sum_probs=124.2
Q ss_pred CceeecEEEccCCccc---cccCccc-------cccCCCceEEccCCeeee----cCCCCCCCCCCccEEEcccccceec
Q 042715 3 LCFDIIYIKLSGNQLT---GPIPYWL-------ENLENISTLWLEKNQLTG----CIPFEIGNLKNLSTLCLEHKQLTGR 68 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~ 68 (212)
++++|++|+++++.+. +..|..+ ..+++|++|++++|.+.. ..+..+..+++|++|++++|.+...
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 4555666666554322 2223222 455666666666666553 2344455566666666666665421
Q ss_pred CC----ccc------------cCCceEEcccceeee-eCC---CcccCCCcccEEEccCCcccc-----cCCcccccCCc
Q 042715 69 IP----SEI------------GKLKPIAASSNNFRG-SIP---QTCKNEANLAMIELSSNLLEG-----RVPKSLASCTE 123 (212)
Q Consensus 69 ~~----~~l------------~~l~~l~l~~n~~~~-~~~---~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~ 123 (212)
.+ ..+ ++|++|++++|.+.. ..+ ..+..+++|++|++++|.+.. ..+..+..+++
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 11 111 566777777776652 222 234456677788887777662 23335667778
Q ss_pred ccEEEccCCCCC-------CcccCCcccccEEEccCCeeeee----cChhccC--CCCccEEEeeCCeeec----CCCCC
Q 042715 124 LKFLNLVSEGIF-------SSTLGNLIVLESLDLSNNKLSGQ----IPQQFGE--LTSLEFFDVSDNLVIG----PIPQG 186 (212)
Q Consensus 124 L~~L~l~~n~~~-------~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~--~~~L~~L~l~~n~~~~----~~~~~ 186 (212)
|+.|++++|.+. +..+..+++|++|++++|.+.+. ++..+.. +++|++|++++|.+.+ .++..
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 888888888763 34566777888888888887654 4555533 7888888888888876 24433
Q ss_pred c--ccccccccccccCCCccCC
Q 042715 187 K--QFNTFETSSFDGNPGLCGE 206 (212)
Q Consensus 187 ~--~~~~l~~l~l~~n~~~~~~ 206 (212)
. .+++++.+++.+|+.....
T Consensus 298 l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 298 IDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhcCCCceEEEccCCcCCcch
Confidence 2 4678888888888876544
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=3.7e-20 Score=147.37 Aligned_cols=187 Identities=18% Similarity=0.183 Sum_probs=99.6
Q ss_pred ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCc-------------cEEEccccccee---
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNL-------------STLCLEHKQLTG--- 67 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~--- 67 (212)
...|++|+++++.+ +.+|..++.+++|++|++++|.+.+..|..+..+.+| ++|++++|.+++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 35667777777777 3667667777777777777776666666666555443 555555554441
Q ss_pred ----------------cCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccC
Q 042715 68 ----------------RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVS 131 (212)
Q Consensus 68 ----------------~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 131 (212)
.+|..+++|++|++++|.+.+ ++.. .++|++|++++|.+.+ +| .++.+++|++|++++
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence 233334445555555554432 1111 1467777777777773 55 477777788888887
Q ss_pred CCCCCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715 132 EGIFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203 (212)
Q Consensus 132 n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~ 203 (212)
|.+.... ....+|++|++++|++.+ +| .+..+++|++|++++|.+.+.+ .. .++++++++.+|...
T Consensus 163 N~l~~lp-~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~-~~--~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 163 NSLKKLP-DLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLP-DL--PLSLESIVAGNNILE 228 (454)
T ss_dssp SCCSCCC-CCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCC-CC--CTTCCEEECCSSCCS
T ss_pred CcCcccC-CCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCC-CC--cCcccEEECcCCcCC
Confidence 7664311 123477888888887773 55 4777888888888888877532 22 247778888887654
No 92
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=5.8e-19 Score=140.47 Aligned_cols=186 Identities=22% Similarity=0.307 Sum_probs=86.6
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcc
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAAS 82 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~ 82 (212)
++++|++|++++|.+.+ +|.. .++|++|++++|.+. ..| .+..+++|++|++++|.+. .+|..++++++|+++
T Consensus 193 ~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~ 265 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVR 265 (454)
T ss_dssp TCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECC
T ss_pred CCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccccccccCEEECC
Confidence 34444444444444441 2221 134555555555544 333 3566677777777777666 345455566666666
Q ss_pred cceeeeeCCCcccCCCcccEEEccCCcccc--cCCccc-------------ccC-CcccEEEccCCCCCCcccCCccccc
Q 042715 83 SNNFRGSIPQTCKNEANLAMIELSSNLLEG--RVPKSL-------------ASC-TELKFLNLVSEGIFSSTLGNLIVLE 146 (212)
Q Consensus 83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~-------------~~~-~~L~~L~l~~n~~~~~~~~~~~~L~ 146 (212)
+|.+.+ +|.. .++|++|++++|.+++ ..|..+ ..+ ++|+.|++++|.+.... ..+++|+
T Consensus 266 ~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp-~~~~~L~ 340 (454)
T 1jl5_A 266 DNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP-ALPPRLE 340 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCC-CCCTTCC
T ss_pred CCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccc-ccCCcCC
Confidence 666553 2222 2455566666655553 111100 111 35556666665543311 1245666
Q ss_pred EEEccCCeeeeecChhccCCCCccEEEeeCCeeec--CCCCC-ccc-------------ccccccccccCCCcc
Q 042715 147 SLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG--PIPQG-KQF-------------NTFETSSFDGNPGLC 204 (212)
Q Consensus 147 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~-~~~-------------~~l~~l~l~~n~~~~ 204 (212)
+|++++|+++ .+|. .+++|++|++++|++.+ .+|.. ..+ ++++.+++++|+...
T Consensus 341 ~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 341 RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred EEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 6666666666 4444 35667777777777665 33332 233 556677777776654
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=5.1e-19 Score=126.74 Aligned_cols=149 Identities=23% Similarity=0.226 Sum_probs=86.4
Q ss_pred ceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEcccceeeeeCCCcccCCCcccEEEccCC
Q 042715 32 STLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSN 108 (212)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 108 (212)
+.++.+++.++ ..|..+ .+++++|++++|.+....+ ..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666666 333322 3577788888877763222 23345666666666666443444556666666666666
Q ss_pred cccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCC
Q 042715 109 LLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183 (212)
Q Consensus 109 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 183 (212)
.+.+..+..+..+++|+.|++++|.+.. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 6664444445566666666666665532 22455666666666666666444444556666666666666555443
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=4.2e-19 Score=145.53 Aligned_cols=171 Identities=24% Similarity=0.341 Sum_probs=140.0
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC--ccccCCceEE
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIA 80 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~ 80 (212)
.+++|+.|+++++.+. .++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.. ++ ..+++|++|+
T Consensus 41 ~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEE
Confidence 4678899999999987 444 58889999999999999885444 8899999999999998873 33 3456789999
Q ss_pred cccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeec
Q 042715 81 ASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQI 159 (212)
Q Consensus 81 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~ 159 (212)
+++|.+.. + ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.. ..+..+++|+.|+|++|.+.+ +
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-l 190 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-L 190 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-C
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC-C
Confidence 99999875 2 4678889999999999998843 578889999999999998754 347889999999999999984 4
Q ss_pred ChhccCCCCccEEEeeCCeeecCCC
Q 042715 160 PQQFGELTSLEFFDVSDNLVIGPIP 184 (212)
Q Consensus 160 ~~~~~~~~~L~~L~l~~n~~~~~~~ 184 (212)
..+..+++|+.|+|++|.+.+.+.
T Consensus 191 -~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 191 -RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp -GGGTTCTTCSEEECCSEEEECCCC
T ss_pred -hHHccCCCCCEEEccCCcCcCCcc
Confidence 458889999999999999986543
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=3.6e-20 Score=137.38 Aligned_cols=169 Identities=20% Similarity=0.300 Sum_probs=133.7
Q ss_pred ceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceEEcc
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPIAAS 82 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l~l~ 82 (212)
+.++..++++++.+. .++ .+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+.+.. ...+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence 445666777777777 333 57788999999999998883 44 6788899999999999887322 2345677899999
Q ss_pred cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecCh
Q 042715 83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQ 161 (212)
Q Consensus 83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~ 161 (212)
+|.+.. ++. +.. ++|++|++++|.+.+ .+ .+..+++|+.|++++|.+.. ..+..+++|+.|++++|.+.+. .
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--T
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--H
Confidence 998874 333 223 889999999999984 43 58889999999999998854 4677889999999999999854 6
Q ss_pred hccCCCCccEEEeeCCeeecCC
Q 042715 162 QFGELTSLEFFDVSDNLVIGPI 183 (212)
Q Consensus 162 ~~~~~~~L~~L~l~~n~~~~~~ 183 (212)
.+..+++|++|++++|++...+
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECCC
T ss_pred HhccCCCCCEEeCCCCcccCCc
Confidence 6889999999999999998664
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1.2e-18 Score=126.66 Aligned_cols=146 Identities=21% Similarity=0.222 Sum_probs=90.7
Q ss_pred ecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCceEEccc
Q 042715 7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKPIAASS 83 (212)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~l~l~~ 83 (212)
-+.++.+++.+. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+....+ ..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 356777777776 5665443 788888888888887777888888888888888888762221 2234556666666
Q ss_pred ceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeee
Q 042715 84 NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLS 156 (212)
Q Consensus 84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~ 156 (212)
|.++...+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.. ..+..+++|+.|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6655443444555566666666666665 455555555555555555554422 23445555555555555554
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.6e-19 Score=135.84 Aligned_cols=184 Identities=20% Similarity=0.272 Sum_probs=149.1
Q ss_pred EccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecC-CccccCCceEEcccceeeee
Q 042715 11 KLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRI-PSEIGKLKPIAASSNNFRGS 89 (212)
Q Consensus 11 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~l~l~~n~~~~~ 89 (212)
.+....+.... .+..+++|++|++++|.+... + .+..+++|++|++++|.+.+.. ...+++|++|++++|.+..
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~- 104 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD- 104 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-
Confidence 34444444222 346789999999999998843 3 5888999999999999998432 2456678999999999875
Q ss_pred CCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccCCCC
Q 042715 90 IPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGELTS 168 (212)
Q Consensus 90 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ 168 (212)
+ ..+..+++|++|++++|.+.+ . ..+..+++|+.|++++|.+.. ..+..+++|++|++++|.+.+..+ +..+++
T Consensus 105 ~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 105 L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCc
Confidence 3 348889999999999999984 4 468899999999999998854 567789999999999999985444 889999
Q ss_pred ccEEEeeCCeeecCCCCCcccccccccccccCCCccC
Q 042715 169 LEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCG 205 (212)
Q Consensus 169 L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~ 205 (212)
|++|++++|.+.+. +....+++++.+++.+|+....
T Consensus 180 L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 180 LQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEECC
T ss_pred cCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccCC
Confidence 99999999999864 4567889999999999986553
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=6.9e-21 Score=145.89 Aligned_cols=174 Identities=19% Similarity=0.220 Sum_probs=90.5
Q ss_pred ceeecEEEccCCccccc-cCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccc-cceec-CC---ccccCCc
Q 042715 4 CFDIIYIKLSGNQLTGP-IPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK-QLTGR-IP---SEIGKLK 77 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~---~~l~~l~ 77 (212)
+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++. ++ ..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 45566666666655433 4455555666666666666555444445555666666666665 34321 11 2344556
Q ss_pred eEEcccc-eeeee-CCCcccCCC-cccEEEccCCc--cc-ccCCcccccCCcccEEEccCCCC-C---CcccCCcccccE
Q 042715 78 PIAASSN-NFRGS-IPQTCKNEA-NLAMIELSSNL--LE-GRVPKSLASCTELKFLNLVSEGI-F---SSTLGNLIVLES 147 (212)
Q Consensus 78 ~l~l~~n-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~n~~-~---~~~~~~~~~L~~ 147 (212)
+|++++| .++.. ++..+..++ +|++|++++|. ++ +.++..+..+++|+.|++++|.. . ...+..+++|++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 6666665 44432 233344555 66666666662 22 23334445556666666666652 2 133445566666
Q ss_pred EEccCCe-eeeecChhccCCCCccEEEeeCC
Q 042715 148 LDLSNNK-LSGQIPQQFGELTSLEFFDVSDN 177 (212)
Q Consensus 148 L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n 177 (212)
|++++|. +.+.....+..+++|++|++++|
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 6666653 32222224555666666666666
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=2.4e-21 Score=148.41 Aligned_cols=195 Identities=18% Similarity=0.178 Sum_probs=145.8
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeec-CCCCCCCCCCccEEEcccccceecCCc---cccCCceEE
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGC-IPFEIGNLKNLSTLCLEHKQLTGRIPS---EIGKLKPIA 80 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~ 80 (212)
++++.++++++.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+. .+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5788888888888855555 45689999999999987744 666678889999999999887644443 356788999
Q ss_pred cccc-eeee-eCCCcccCCCcccEEEccCC-ccccc-CCcccccCC-cccEEEccCCC--CC----CcccCCcccccEEE
Q 042715 81 ASSN-NFRG-SIPQTCKNEANLAMIELSSN-LLEGR-VPKSLASCT-ELKFLNLVSEG--IF----SSTLGNLIVLESLD 149 (212)
Q Consensus 81 l~~n-~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~n~--~~----~~~~~~~~~L~~L~ 149 (212)
+++| .++. .++..+..+++|++|++++| .+++. .+..+..++ +|++|++++|. +. +..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9988 4554 24455677888999999998 77743 456677888 99999999984 32 24456788999999
Q ss_pred ccCCe-eeeecChhccCCCCccEEEeeCCe-eecC-CCCCcccccccccccccC
Q 042715 150 LSNNK-LSGQIPQQFGELTSLEFFDVSDNL-VIGP-IPQGKQFNTFETSSFDGN 200 (212)
Q Consensus 150 l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-~~~~-~~~~~~~~~l~~l~l~~n 200 (212)
+++|. +++..+..+..+++|++|++++|. +... +.....+++++.+++.+|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99998 666677788888999999999985 2211 112346788888888877
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=1.6e-21 Score=151.07 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=32.9
Q ss_pred eeecEEEccCCccccccC----ccccccC-CCceEEccCCeeeecCCCCCCCC-----CCccEEEcccccce
Q 042715 5 FDIIYIKLSGNQLTGPIP----YWLENLE-NISTLWLEKNQLTGCIPFEIGNL-----KNLSTLCLEHKQLT 66 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~ 66 (212)
++|++|++++|.+....+ ..|..++ +|++|++++|.+....+..+..+ ++|++|++++|.++
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 346666666666554333 4455555 56666666665554333333332 55555555555554
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=7.4e-19 Score=130.33 Aligned_cols=148 Identities=18% Similarity=0.269 Sum_probs=125.2
Q ss_pred CceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcc
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAAS 82 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~ 82 (212)
.+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.......+|++|+++
T Consensus 39 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~ 114 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD 114 (263)
T ss_dssp HHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECC
T ss_pred hcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccccCcccEEEcc
Confidence 5688999999999998 555 68899999999999999995444 8999999999999999984222222789999999
Q ss_pred cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeee
Q 042715 83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQ 158 (212)
Q Consensus 83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~ 158 (212)
+|.+... ..+..+++|++|++++|.+.+ .+ .++.+++|+.|++++|.+.. ..+..+++|+.|++++|.+.+.
T Consensus 115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 115 NNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred CCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence 9998853 358889999999999999984 44 68899999999999998854 5678899999999999999843
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.7e-21 Score=152.13 Aligned_cols=201 Identities=18% Similarity=0.148 Sum_probs=154.5
Q ss_pred CceeecEEEccCCcccccc----CccccccCCCceEEccCCeee---ecCCCC-------CCCCCCccEEEcccccceec
Q 042715 3 LCFDIIYIKLSGNQLTGPI----PYWLENLENISTLWLEKNQLT---GCIPFE-------IGNLKNLSTLCLEHKQLTGR 68 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~---~~~~~~-------~~~l~~L~~L~l~~~~~~~~ 68 (212)
.+++|++|++++|.+.... +..+..+++|++|++++|.+. +..|.. +..+++|++|++++|.+...
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 4688999999999988553 344778999999999997433 333333 36889999999999998752
Q ss_pred ----CC---ccccCCceEEcccceeeeeCCCc----ccCC---------CcccEEEccCCccc-ccCC---cccccCCcc
Q 042715 69 ----IP---SEIGKLKPIAASSNNFRGSIPQT----CKNE---------ANLAMIELSSNLLE-GRVP---KSLASCTEL 124 (212)
Q Consensus 69 ----~~---~~l~~l~~l~l~~n~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~-~~~~---~~~~~~~~L 124 (212)
++ ..+++|++|++++|.+....+.. +..+ ++|++|++++|.+. ...+ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 33 34568899999999986432222 3333 79999999999886 3333 356688899
Q ss_pred cEEEccCCCCCC--------cccCCcccccEEEccCCeee----eecChhccCCCCccEEEeeCCeeecC----CCCC--
Q 042715 125 KFLNLVSEGIFS--------STLGNLIVLESLDLSNNKLS----GQIPQQFGELTSLEFFDVSDNLVIGP----IPQG-- 186 (212)
Q Consensus 125 ~~L~l~~n~~~~--------~~~~~~~~L~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~-- 186 (212)
+.|++++|.+.. ..+..+++|++|++++|.++ ..++..+..+++|++|++++|.+.+. ++..
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 999999998763 26778899999999999995 46788889999999999999998754 2222
Q ss_pred -cccccccccccccCCCc
Q 042715 187 -KQFNTFETSSFDGNPGL 203 (212)
Q Consensus 187 -~~~~~l~~l~l~~n~~~ 203 (212)
..+++++.|++.+|...
T Consensus 270 ~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp TCSSCCCCEEECCSSCCB
T ss_pred hccCCCeEEEECcCCcCC
Confidence 23788999999999864
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=4.1e-18 Score=131.37 Aligned_cols=194 Identities=13% Similarity=0.104 Sum_probs=108.5
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeee-cCCCCCCCCCCccEE-EcccccceecCCc---cccCCceE
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTG-CIPFEIGNLKNLSTL-CLEHKQLTGRIPS---EIGKLKPI 79 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L-~l~~~~~~~~~~~---~l~~l~~l 79 (212)
+++++|++++|.++...+++|.++++|++|++++|.+.+ ..+.+|..+++++.+ .+.+|.+....+. .+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 457777777777774444567777777777777777643 344566777776653 4445666533332 34566777
Q ss_pred EcccceeeeeCCCcccCCCcccEEEccC-CcccccCCcccccCC-cccEEEccCCCCCC--cccCCcccccEEEccC-Ce
Q 042715 80 AASSNNFRGSIPQTCKNEANLAMIELSS-NLLEGRVPKSLASCT-ELKFLNLVSEGIFS--STLGNLIVLESLDLSN-NK 154 (212)
Q Consensus 80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~--~~~~~~~~L~~L~l~~-n~ 154 (212)
++++|.+....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.+.. .......+++.+++++ |.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 7777766544333344444555555544 234433333444433 46667777766532 2233445666676654 45
Q ss_pred eeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccC
Q 042715 155 LSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGN 200 (212)
Q Consensus 155 i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n 200 (212)
+....+++|..+++|++|++++|+++..++. .+..+++|...++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST 233 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC
Confidence 5533334566677777777777776644432 2334444444333
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.9e-19 Score=147.54 Aligned_cols=187 Identities=20% Similarity=0.290 Sum_probs=152.9
Q ss_pred cEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC-ccccCCceEEccccee
Q 042715 8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP-SEIGKLKPIAASSNNF 86 (212)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~l~l~~n~~ 86 (212)
..+.+..+.+.... .+..+++|+.|+++++.+.. .+ .+..+++|+.|++++|.+.+..+ ..+++|+.|++++|.+
T Consensus 24 ~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 24 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred HHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCC
Confidence 33445555555333 25678999999999999884 33 68899999999999999884332 4567889999999998
Q ss_pred eeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC-cccCCcccccEEEccCCeeeeecChhccC
Q 042715 87 RGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS-STLGNLIVLESLDLSNNKLSGQIPQQFGE 165 (212)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 165 (212)
.. + ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.. ..+..+++|+.|+|++|.+.+..| +..
T Consensus 100 ~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 173 (605)
T 1m9s_A 100 KD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAG 173 (605)
T ss_dssp CC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hcc
Confidence 74 3 378889999999999999984 4 468899999999999998855 567889999999999999986555 889
Q ss_pred CCCccEEEeeCCeeecCCCCCcccccccccccccCCCccC
Q 042715 166 LTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLCG 205 (212)
Q Consensus 166 ~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~ 205 (212)
+++|+.|+|++|.+.+. +....+++|+.|++.+|+....
T Consensus 174 l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence 99999999999999865 5667889999999999987554
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=8.3e-19 Score=135.77 Aligned_cols=170 Identities=22% Similarity=0.169 Sum_probs=140.0
Q ss_pred cEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCC-CCCCccEEEcccccceecCCc---cccCCceEEccc
Q 042715 8 IYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIG-NLKNLSTLCLEHKQLTGRIPS---EIGKLKPIAASS 83 (212)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~---~l~~l~~l~l~~ 83 (212)
+.++.+++.+. .+|..+. +.+++|++++|.++...+..+. .+++|+.|++++|.+....+. .+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888888 5676553 4689999999999988887787 899999999999999854433 456789999999
Q ss_pred ceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---ccc---CCcccccEEEccCCeeee
Q 042715 84 NNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STL---GNLIVLESLDLSNNKLSG 157 (212)
Q Consensus 84 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~---~~~~~L~~L~l~~n~i~~ 157 (212)
|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+ ..+++|+.|+|++|++.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99987777778899999999999999997778889999999999999998854 223 468899999999999985
Q ss_pred ecChhccCCCC--ccEEEeeCCeee
Q 042715 158 QIPQQFGELTS--LEFFDVSDNLVI 180 (212)
Q Consensus 158 ~~~~~~~~~~~--L~~L~l~~n~~~ 180 (212)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 55567777877 488999999885
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=4.6e-19 Score=125.97 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=124.2
Q ss_pred CCCCCccEEEcccccceecCC--ccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEE
Q 042715 50 GNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFL 127 (212)
Q Consensus 50 ~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 127 (212)
..+++|+.|++++|.+. .++ ..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..++.+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56789999999999988 444 34678899999999664 23477889999999999999997778889999999999
Q ss_pred EccCCCCCC---cccCCcccccEEEccCCe-eeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCC
Q 042715 128 NLVSEGIFS---STLGNLIVLESLDLSNNK-LSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPG 202 (212)
Q Consensus 128 ~l~~n~~~~---~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~ 202 (212)
++++|.+.. ..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+.+.. ....+++++++++.+|+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 999998863 567889999999999998 76 555 6889999999999999998644 667899999999999985
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.5e-18 Score=133.76 Aligned_cols=199 Identities=18% Similarity=0.162 Sum_probs=149.3
Q ss_pred CCCceeecEEEccCCccccccC-ccccccCCCce-EEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccc---cC
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIP-YWLENLENIST-LWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEI---GK 75 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~ 75 (212)
|+++++|++|++++|.+.+.+| ++|.+++++++ +.+.+|++....++.|..+++|++|++++|.+....+..+ .+
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 129 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence 5789999999999999865554 57889999876 5567788998888999999999999999999873333222 24
Q ss_pred CceEEccc-ceeeeeCCCcccCCC-cccEEEccCCcccccCCcccccCCcccEEEccC-CCCC--C-cccCCcccccEEE
Q 042715 76 LKPIAASS-NNFRGSIPQTCKNEA-NLAMIELSSNLLEGRVPKSLASCTELKFLNLVS-EGIF--S-STLGNLIVLESLD 149 (212)
Q Consensus 76 l~~l~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~--~-~~~~~~~~L~~L~ 149 (212)
+..+++.+ +.+....+..+.... .++.|++++|.++ .++.......+++.+++.+ |.+. + ..|.++++|+.|+
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 46677755 445544445555554 6899999999999 4554444567899999986 4442 2 5678999999999
Q ss_pred ccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCcc
Q 042715 150 LSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGLC 204 (212)
Q Consensus 150 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~ 204 (212)
+++|+++ .+|. ..+.+|+.|...++.-.+.+|....+++++.+++. +++.|
T Consensus 209 Ls~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~-~~~~c 259 (350)
T 4ay9_X 209 ISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT-YPSHC 259 (350)
T ss_dssp CTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS-CHHHH
T ss_pred cCCCCcC-ccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCC-CCccc
Confidence 9999998 5554 23566777777777666677877889999999986 55555
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=9.4e-22 Score=160.18 Aligned_cols=190 Identities=15% Similarity=0.132 Sum_probs=145.1
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCe-------------eeecCCCCCCCCCCccEEE-ccccccee
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQ-------------LTGCIPFEIGNLKNLSTLC-LEHKQLTG 67 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 67 (212)
..+++|+.|++++|.+. .+|+.++.+++|++|+++++. ..+..|..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677888889988887 788888889999999887664 2334455566777777777 5555332
Q ss_pred cCC---------cc--ccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC
Q 042715 68 RIP---------SE--IGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS 136 (212)
Q Consensus 68 ~~~---------~~--l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 136 (212)
.++ .. ...++.|++++|.++. +|. ++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.+..
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 111 11 1257889999998874 555 888899999999999998 778889999999999999998743
Q ss_pred -cccCCcccccEEEccCCeeeeec-ChhccCCCCccEEEeeCCeeecCCCCCc----ccccccccc
Q 042715 137 -STLGNLIVLESLDLSNNKLSGQI-PQQFGELTSLEFFDVSDNLVIGPIPQGK----QFNTFETSS 196 (212)
Q Consensus 137 -~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~l~~l~ 196 (212)
..+..+++|+.|++++|++++.. |..+..+++|+.|++++|.+++.++... .+++++.|+
T Consensus 501 lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 36778899999999999998665 8889999999999999999988777653 256666653
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=3.2e-18 Score=139.17 Aligned_cols=161 Identities=22% Similarity=0.278 Sum_probs=133.4
Q ss_pred eeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccc
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSN 84 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n 84 (212)
++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|..+++|++|++++|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPELPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCCCCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCCcCccccEEeCCCC
Confidence 57999999999998 677 457999999999999996 565 554 99999999999984 6667788999999999
Q ss_pred eeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCCcc-cCCcccc-------cEEEccCCeee
Q 042715 85 NFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFSST-LGNLIVL-------ESLDLSNNKLS 156 (212)
Q Consensus 85 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L-------~~L~l~~n~i~ 156 (212)
.++. +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.+.... +.. +| +.|++++|.|+
T Consensus 151 ~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 151 QLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCC
T ss_pred ccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcce
Confidence 9985 554 46799999999999995 666 55 89999999999885421 333 67 99999999998
Q ss_pred eecChhccCCCCccEEEeeCCeeecCCCC
Q 042715 157 GQIPQQFGELTSLEFFDVSDNLVIGPIPQ 185 (212)
Q Consensus 157 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 185 (212)
.+|..+..+++|++|++++|++.+.+|.
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 6888888899999999999999875543
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2e-17 Score=135.82 Aligned_cols=54 Identities=22% Similarity=0.077 Sum_probs=27.5
Q ss_pred ccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCCCcccccccccccccCCCc
Q 042715 143 IVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQGKQFNTFETSSFDGNPGL 203 (212)
Q Consensus 143 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~ 203 (212)
++|+.|++++|.++ .+| ..+++|++|++++|.+...++ .+++++.|++.+|...
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC
Confidence 34555555555554 233 234555566666665553222 4455666666666544
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=1.5e-20 Score=145.62 Aligned_cols=196 Identities=17% Similarity=0.121 Sum_probs=140.3
Q ss_pred EEEccCCccccccCccccccCCCceEEccCCeeeecCC----CCCCCCC-CccEEEcccccceecCCcc---c-----cC
Q 042715 9 YIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIP----FEIGNLK-NLSTLCLEHKQLTGRIPSE---I-----GK 75 (212)
Q Consensus 9 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~---l-----~~ 75 (212)
++.++++.+.+.+|..+...++|++|++++|.+....+ .++..++ +|++|++++|.+....+.. + ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999998888777666779999999999986555 6778888 8999999999998554432 2 67
Q ss_pred CceEEcccceeeeeCCCc----ccCC-CcccEEEccCCcccccCCcccc----c-CCcccEEEccCCCCCC-------cc
Q 042715 76 LKPIAASSNNFRGSIPQT----CKNE-ANLAMIELSSNLLEGRVPKSLA----S-CTELKFLNLVSEGIFS-------ST 138 (212)
Q Consensus 76 l~~l~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~L~l~~n~~~~-------~~ 138 (212)
|++|++++|.+....+.. +... ++|++|++++|.+.+..+..+. . ..+|++|++++|.+.. ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 899999999987544432 3334 7899999999998855443332 3 3589999999987753 22
Q ss_pred cCCcc-cccEEEccCCeeeeecCh----hccCC-CCccEEEeeCCeeecCCC----C-Ccc-cccccccccccCCCcc
Q 042715 139 LGNLI-VLESLDLSNNKLSGQIPQ----QFGEL-TSLEFFDVSDNLVIGPIP----Q-GKQ-FNTFETSSFDGNPGLC 204 (212)
Q Consensus 139 ~~~~~-~L~~L~l~~n~i~~~~~~----~~~~~-~~L~~L~l~~n~~~~~~~----~-~~~-~~~l~~l~l~~n~~~~ 204 (212)
+...+ +|++|++++|++.+..+. .+... ++|++|++++|.+.+... . ... .++++++++++|....
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 23343 788888888888755443 33444 488888888888875221 1 112 2478888888887543
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=5.4e-18 Score=120.01 Aligned_cols=110 Identities=23% Similarity=0.338 Sum_probs=77.6
Q ss_pred CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEe
Q 042715 98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDV 174 (212)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 174 (212)
+++++|++++|.+. .+|..+..+++|+.|++++|.+.. ..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35666677776666 555666666777777777776533 44667777777888888777666667777888888888
Q ss_pred eCCeeecCCCC-CcccccccccccccCCCccCCCC
Q 042715 175 SDNLVIGPIPQ-GKQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 175 ~~n~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
++|.+...++. ...+++++.+++.+||+.|+|.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 88888766554 33677788888888888887764
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=5e-18 Score=120.10 Aligned_cols=128 Identities=23% Similarity=0.280 Sum_probs=77.7
Q ss_pred ceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCC-cccCCCcccEEEccCCcc
Q 042715 32 STLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQ-TCKNEANLAMIELSSNLL 110 (212)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~-~~~~~~~L~~L~l~~~~~ 110 (212)
++++++++.++ .+|..+. .++++|++++|.+. ...+. .+..+++|++|++++|.+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~---------------------~~~~~~~~~~l~~L~~L~Ls~N~l 66 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELG---------------------RISSDGLFGRLPHLVKLELKRNQL 66 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCC---------------------SBCCSCSGGGCTTCCEEECCSSCC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCC---------------------ccCCccccccCCCCCEEECCCCCC
Confidence 56666666665 3443332 25666666666554 22221 245566666666666666
Q ss_pred cccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCC
Q 042715 111 EGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183 (212)
Q Consensus 111 ~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 183 (212)
++..|..+..+++|+.|++++|.+.. ..+.++++|++|++++|++++..|..+..+++|++|++++|++.+..
T Consensus 67 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 65556666666666666666666532 33556667777777777777666666777777777777777765443
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=8.3e-18 Score=118.98 Aligned_cols=128 Identities=18% Similarity=0.276 Sum_probs=105.7
Q ss_pred eEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCc-ccccCCcccEEEccCCCCC---CcccCCcccccEEEccCC
Q 042715 78 PIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPK-SLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNN 153 (212)
Q Consensus 78 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n 153 (212)
+++++++.+. .+|..+. .++++|++++|.+.+..+. .++.+++|+.|++++|.+. +..+.++++|++|++++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4444444443 4444443 3899999999999855543 4889999999999999874 467889999999999999
Q ss_pred eeeeecChhccCCCCccEEEeeCCeeecCCCCC-cccccccccccccCCCccCCCC
Q 042715 154 KLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
++.+..+..+..+++|++|++++|++.+.+|.. ..+++++++++.+|++.|+|++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 999888888999999999999999999887654 4789999999999999999975
No 115
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=1.8e-20 Score=149.29 Aligned_cols=86 Identities=15% Similarity=-0.002 Sum_probs=41.0
Q ss_pred cccCCcccEEEccCCCCCC--------cccCCcccccEEEccCCeeeee----cChhccCCCCccEEEeeCCeeecCCCC
Q 042715 118 LASCTELKFLNLVSEGIFS--------STLGNLIVLESLDLSNNKLSGQ----IPQQFGELTSLEFFDVSDNLVIGPIPQ 185 (212)
Q Consensus 118 ~~~~~~L~~L~l~~n~~~~--------~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~ 185 (212)
+..+++|++|++++|.+.. ..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 3344555555555554322 1112345555666665555532 344445556666666666655422111
Q ss_pred Cc------ccccccccccccCCCc
Q 042715 186 GK------QFNTFETSSFDGNPGL 203 (212)
Q Consensus 186 ~~------~~~~l~~l~l~~n~~~ 203 (212)
.. ..++++++++.+|...
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhccCCccceeeEcCCCCCc
Confidence 00 1135666666666543
No 116
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=1.1e-20 Score=150.65 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=20.6
Q ss_pred eeecEEEccCCccccc----cCccccccCCCceEEccCCeee
Q 042715 5 FDIIYIKLSGNQLTGP----IPYWLENLENISTLWLEKNQLT 42 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~ 42 (212)
++|++|++++|.+... ++..+..+++|++|++++|.+.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 4566666666655532 2344445556666666665544
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=2.8e-17 Score=113.78 Aligned_cols=133 Identities=24% Similarity=0.226 Sum_probs=92.4
Q ss_pred cCCCceEEccCCeee-ecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEcc
Q 042715 28 LENISTLWLEKNQLT-GCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELS 106 (212)
Q Consensus 28 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~ 106 (212)
.++|++|++++|.+. +..|..+..+++|++|++++|.+.. . ..+..+++|++|+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~----------------------~-~~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----------------------V-SNLPKLPKLKKLELS 79 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC----------------------C-SSCCCCSSCCEEEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC----------------------h-hhhccCCCCCEEECc
Confidence 366777777777766 4555556666777777777666551 1 344556777777887
Q ss_pred CCcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEccCCeeeeecC---hhccCCCCccEEEeeCCee
Q 042715 107 SNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSGQIP---QQFGELTSLEFFDVSDNLV 179 (212)
Q Consensus 107 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~~ 179 (212)
+|.+.+..|..+..+++|+.|++++|.+.. ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 777775566666667777888877776643 456677888888888888874433 3778888888888888877
Q ss_pred ecCC
Q 042715 180 IGPI 183 (212)
Q Consensus 180 ~~~~ 183 (212)
...+
T Consensus 160 ~~~~ 163 (168)
T 2ell_A 160 QEAP 163 (168)
T ss_dssp CBCC
T ss_pred hhcc
Confidence 6443
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=8.7e-17 Score=109.06 Aligned_cols=126 Identities=25% Similarity=0.295 Sum_probs=83.7
Q ss_pred cCCCceEEccCCeee-ecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEcc
Q 042715 28 LENISTLWLEKNQLT-GCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELS 106 (212)
Q Consensus 28 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~ 106 (212)
.+++++|++++|.+. +..|..+..+++|++|++++|.+... ..+..+++|++|+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----------------------ANLPKLNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-----------------------TTCCCCTTCCEEECC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-----------------------hhhhcCCCCCEEECC
Confidence 366777777777776 45666667777777777777766511 234455677777777
Q ss_pred CCcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEccCCeeeeecC---hhccCCCCccEEEeeC
Q 042715 107 SNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSGQIP---QQFGELTSLEFFDVSD 176 (212)
Q Consensus 107 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~ 176 (212)
+|.+.+..|..+..+++|+.|++++|.+.. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777775455555566777777777776643 445667777778888777774444 3667777777777653
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.1e-16 Score=110.72 Aligned_cols=131 Identities=21% Similarity=0.168 Sum_probs=88.5
Q ss_pred CceeecEEEccCCccc-cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEc
Q 042715 3 LCFDIIYIKLSGNQLT-GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAA 81 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l 81 (212)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+...++.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~---------- 89 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM---------- 89 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH----------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH----------
Confidence 3578999999999997 67888889999999999999999854 7889999999999999998743432
Q ss_pred ccceeeeeCCCcccCCCcccEEEccCCcccccC-CcccccCCcccEEEccCCCCCC--c----ccCCcccccEEEccCCe
Q 042715 82 SSNNFRGSIPQTCKNEANLAMIELSSNLLEGRV-PKSLASCTELKFLNLVSEGIFS--S----TLGNLIVLESLDLSNNK 154 (212)
Q Consensus 82 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~--~----~~~~~~~L~~L~l~~n~ 154 (212)
.+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.. . .+..+++|++|++++|.
T Consensus 90 -----------~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 90 -----------LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp -----------HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred -----------HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 2223345555555555554211 1344455555555555554422 1 34455666666666665
Q ss_pred ee
Q 042715 155 LS 156 (212)
Q Consensus 155 i~ 156 (212)
+.
T Consensus 159 ~~ 160 (168)
T 2ell_A 159 DQ 160 (168)
T ss_dssp SC
T ss_pred hh
Confidence 54
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=3.3e-16 Score=109.26 Aligned_cols=129 Identities=22% Similarity=0.218 Sum_probs=76.7
Q ss_pred ccEEEcccccceecCCcc-ccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC
Q 042715 55 LSTLCLEHKQLTGRIPSE-IGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG 133 (212)
Q Consensus 55 L~~L~l~~~~~~~~~~~~-l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 133 (212)
.+.++++++.+. .+|.. .+++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCc-cCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 456777777776 44433 3456777777776664444455666677777777776664444445666666666666665
Q ss_pred CCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCC
Q 042715 134 IFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP 184 (212)
Q Consensus 134 ~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 184 (212)
+.. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 532 234555666666666666654434444556666666666666654443
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=111.02 Aligned_cols=125 Identities=24% Similarity=0.334 Sum_probs=83.1
Q ss_pred ceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCccc
Q 042715 32 STLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLE 111 (212)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 111 (212)
++++++++.++ .+|..+ .+++++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~----------------------~ip~~~~~l~~L~~L~Ls~N~i~ 67 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT----------------------LVPKELSNYKHLTLIDLSNNRIS 67 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC----------------------SCCGGGGGCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc----------------------hhHHHhhcccCCCEEECCCCcCC
Confidence 45666666655 333322 245555555555554 34455666677777777777777
Q ss_pred ccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeec
Q 042715 112 GRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIG 181 (212)
Q Consensus 112 ~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~ 181 (212)
+..+..|..+++|+.|++++|.+.. ..+.++++|++|++++|.+....+..+..+++|++|++++|++..
T Consensus 68 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 5555667777777777777776632 456777788888888888875555567778888888888887753
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.2e-16 Score=107.06 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=95.7
Q ss_pred CceeecEEEccCCccc-cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccCCce
Q 042715 3 LCFDIIYIKLSGNQLT-GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGKLKP 78 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~ 78 (212)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|.. +++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999999998 67888889999999999999999855 78899999999999999998545542 556777
Q ss_pred EEcccceeeee-CCCcccCCCcccEEEccCCcccccCC---cccccCCcccEEEcc
Q 042715 79 IAASSNNFRGS-IPQTCKNEANLAMIELSSNLLEGRVP---KSLASCTELKFLNLV 130 (212)
Q Consensus 79 l~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 130 (212)
|++++|.+... .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777776642 22556667777777777777764333 356666677766654
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=1.7e-17 Score=138.96 Aligned_cols=155 Identities=23% Similarity=0.234 Sum_probs=78.8
Q ss_pred eeecEEEccCCccccccCccccccCCCceEE-----ccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccCC
Q 042715 5 FDIIYIKLSGNQLTGPIPYWLENLENISTLW-----LEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGKL 76 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~-----l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l 76 (212)
+.++.|++.++.+.. .+..+.....|+.+. +..+.+. ..++.+..++.|+.|++++|.+. .++.. +.+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 446667777766663 333332333333332 2223333 45666777777777777777776 45543 3566
Q ss_pred ceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCcccccEEEccCCe
Q 042715 77 KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLESLDLSNNK 154 (212)
Q Consensus 77 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~l~~n~ 154 (212)
++|++++|.++ .+|..+..+++|++|++++|.+. .+|..++.+++|+.|++++|.+ ++..+..+++|+.|+|++|.
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 77777777777 66667777777777777777777 6677777777777777777766 34556777777777777777
Q ss_pred eeeecChhcc
Q 042715 155 LSGQIPQQFG 164 (212)
Q Consensus 155 i~~~~~~~~~ 164 (212)
+.+.+|..+.
T Consensus 328 l~~~~p~~~~ 337 (727)
T 4b8c_D 328 LEKQFLKILT 337 (727)
T ss_dssp CCSHHHHHHH
T ss_pred cCCCChHHHh
Confidence 7766555543
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=2.9e-15 Score=114.43 Aligned_cols=191 Identities=13% Similarity=0.079 Sum_probs=136.2
Q ss_pred ceeecEEEccCCccc--------------------cccCccccc--------cCCCceEEccCCeeeecCCCCCCCCCCc
Q 042715 4 CFDIIYIKLSGNQLT--------------------GPIPYWLEN--------LENISTLWLEKNQLTGCIPFEIGNLKNL 55 (212)
Q Consensus 4 l~~L~~L~l~~~~~~--------------------~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~l~~L 55 (212)
+++|+.||+++|.+. ...+.+|.+ +++|+.+++.+ .+......+|..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 567999999998877 223447778 99999999998 7777788889999999
Q ss_pred cEEEcccccceecCCccccC---CceEEcccce------------e------e---------------------------
Q 042715 56 STLCLEHKQLTGRIPSEIGK---LKPIAASSNN------------F------R--------------------------- 87 (212)
Q Consensus 56 ~~L~l~~~~~~~~~~~~l~~---l~~l~l~~n~------------~------~--------------------------- 87 (212)
+.+++..+.+....+..|.. +.++...... + .
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 99999998765222222322 1222211100 0 0
Q ss_pred ----eeCC----Ccc-cCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCccccc-EEEccCCee
Q 042715 88 ----GSIP----QTC-KNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLE-SLDLSNNKL 155 (212)
Q Consensus 88 ----~~~~----~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~-~L~l~~n~i 155 (212)
+.+. ..+ ..+++|+.+++++|.+....+.+|..+.+|+.+++.+|-. ....|.++.+|+ .+++.+ .+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cc
Confidence 0000 000 1267899999999988866777899999999999998721 347789999999 999998 67
Q ss_pred eeecChhccCCCCccEEEeeCCeeecCCCC-Ccccccccccc
Q 042715 156 SGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSS 196 (212)
Q Consensus 156 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~ 196 (212)
....+.+|.++++|+.+++++|.+....+. ....++++.+.
T Consensus 286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 286 TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 657789999999999999999998766553 33566666654
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.6e-15 Score=104.64 Aligned_cols=110 Identities=25% Similarity=0.259 Sum_probs=56.3
Q ss_pred CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEe
Q 042715 98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDV 174 (212)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 174 (212)
+++++|++++|.+.+..+..++.+++|+.|++++|.+.. ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 355555555555553333344555555555555554422 22345555555555555555433444455555555555
Q ss_pred eCCeeecCCCCC-cccccccccccccCCCccCCC
Q 042715 175 SDNLVIGPIPQG-KQFNTFETSSFDGNPGLCGEP 207 (212)
Q Consensus 175 ~~n~~~~~~~~~-~~~~~l~~l~l~~n~~~~~~~ 207 (212)
++|.+.+.++.. ..+++++++++.+|++.|+|+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 555555444332 245555555555555555543
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.5e-16 Score=133.28 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=99.2
Q ss_pred cCCCceEEccCCeeeecCCCCCCCCCCccEEEccc-----ccce--ecCCccccCCceEEcccceeeeeCCCcccCCCcc
Q 042715 28 LENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEH-----KQLT--GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANL 100 (212)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----~~~~--~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L 100 (212)
.+.++.|++.++.+.. .+..+....+|+.+.+.. +.+. ......+..|+.|++++|.+. .++..+..+++|
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 3668889998888774 343333333344433332 3222 112234567899999999988 677777789999
Q ss_pred cEEEccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCe
Q 042715 101 AMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNL 178 (212)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 178 (212)
++|++++|.+. .+|..++.+++|+.|++++|.+. +..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 99999999999 88888999999999999999874 567889999999999999998 788889999999999999999
Q ss_pred eecCCCCC
Q 042715 179 VIGPIPQG 186 (212)
Q Consensus 179 ~~~~~~~~ 186 (212)
+.+.+|..
T Consensus 328 l~~~~p~~ 335 (727)
T 4b8c_D 328 LEKQFLKI 335 (727)
T ss_dssp CCSHHHHH
T ss_pred cCCCChHH
Confidence 98766653
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.5e-15 Score=105.83 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=85.4
Q ss_pred ccccCCCceEEccCCeeeecCCCCCCCC-CCccEEEcccccceecCCccccCCceEEcccceeeeeCCCcccCCCcccEE
Q 042715 25 LENLENISTLWLEKNQLTGCIPFEIGNL-KNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMI 103 (212)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L 103 (212)
+..+.+|++|++++|.+.. .+. +..+ ++|++|++++|.+.+ . ..+..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~---------------------~--~~l~~l~~L~~L 69 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK---------------------L--DGFPLLRRLKTL 69 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE---------------------E--CCCCCCSSCCEE
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc---------------------c--cccccCCCCCEE
Confidence 4566777777777777663 332 3333 366666666666552 1 244556677777
Q ss_pred EccCCcccccCCcccccCCcccEEEccCCCCCC--c--ccCCcccccEEEccCCeeeeecCh----hccCCCCccEEEee
Q 042715 104 ELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS--S--TLGNLIVLESLDLSNNKLSGQIPQ----QFGELTSLEFFDVS 175 (212)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~--~~~~~~~L~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~ 175 (212)
++++|.+.+..+..+..+++|+.|++++|.+.. . .+..+++|++|++++|.+. .+|. .+..+++|++|+++
T Consensus 70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp ECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred ECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCC
Confidence 777777774433444677777777777776643 2 4567778888888888887 4555 37788888888888
Q ss_pred CCeee
Q 042715 176 DNLVI 180 (212)
Q Consensus 176 ~n~~~ 180 (212)
+|...
T Consensus 149 ~n~~~ 153 (176)
T 1a9n_A 149 KVKLK 153 (176)
T ss_dssp ECCHH
T ss_pred cCCHH
Confidence 88764
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=5.2e-15 Score=103.10 Aligned_cols=126 Identities=11% Similarity=0.145 Sum_probs=80.8
Q ss_pred CCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---ccccCCce
Q 042715 2 SLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP---SEIGKLKP 78 (212)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~ 78 (212)
.++.+|+.|++++|.+. .++......++|++|++++|.+++. ..+..+++|++|++++|.+....+ ..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 35788999999999998 5565333344999999999999965 688999999999999999873222 22345555
Q ss_pred EEcccceeeeeCCC--cccCCCcccEEEccCCcccccCCcc----cccCCcccEEEccCC
Q 042715 79 IAASSNNFRGSIPQ--TCKNEANLAMIELSSNLLEGRVPKS----LASCTELKFLNLVSE 132 (212)
Q Consensus 79 l~l~~n~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n 132 (212)
|++++|.+. .++. .+..+++|+.|++++|.+. ..|.. +..+++|+.|+++.|
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 555555553 2222 3444555555555555554 23332 444444444444444
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=6.6e-15 Score=101.98 Aligned_cols=85 Identities=25% Similarity=0.262 Sum_probs=40.5
Q ss_pred CcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCCC-Cccccccccccc
Q 042715 122 TELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIPQ-GKQFNTFETSSF 197 (212)
Q Consensus 122 ~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~l~l 197 (212)
+.++.|++++|.+. +..+.++++|++|++++|++.+..+..|..+++|++|++++|++.+.++. ...+++++.+++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444432 12344444555555555555433334444555555555555555544433 224455555555
Q ss_pred ccCCCccCC
Q 042715 198 DGNPGLCGE 206 (212)
Q Consensus 198 ~~n~~~~~~ 206 (212)
.+||+.|+|
T Consensus 110 ~~N~~~c~c 118 (170)
T 3g39_A 110 LNNPWDCAC 118 (170)
T ss_dssp CSSCBCTTB
T ss_pred CCCCCCCCc
Confidence 555555554
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=8.5e-18 Score=136.96 Aligned_cols=177 Identities=18% Similarity=0.125 Sum_probs=134.5
Q ss_pred cccCCCceEEccCCeeeecCCCCCCCCCCccEEEccccc-------------ceecCCc---cccCCceEE-cccceeee
Q 042715 26 ENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQ-------------LTGRIPS---EIGKLKPIA-ASSNNFRG 88 (212)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~---~l~~l~~l~-l~~n~~~~ 88 (212)
..+++|+.|++++|.+. .+|..+..+++|+.|+++++. ..+..|. .+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 56789999999999988 678888899999999987764 2222222 234455565 33332211
Q ss_pred eC--------CCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCC--CcccCCcccccEEEccCCeeeee
Q 042715 89 SI--------PQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIF--SSTLGNLIVLESLDLSNNKLSGQ 158 (212)
Q Consensus 89 ~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~i~~~ 158 (212)
.. ...+. ...|+.|++++|.++ .+|. ++.+++|+.|++++|.+. +..+..+++|+.|+|++|.+++
T Consensus 425 L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKME-YADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHH-HTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccC-ccCceEEEecCCCCC-CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-
Confidence 00 00011 135899999999999 4676 999999999999999884 5678899999999999999984
Q ss_pred cChhccCCCCccEEEeeCCeeecCC--CCCcccccccccccccCCCccCCCC
Q 042715 159 IPQQFGELTSLEFFDVSDNLVIGPI--PQGKQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
+| .+..+++|++|++++|.+.+.. .....+++++.|++++|+....++.
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 66 7999999999999999999884 4455899999999999998766553
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=1.8e-14 Score=100.15 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=48.4
Q ss_pred ceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCC
Q 042715 77 KPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNN 153 (212)
Q Consensus 77 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n 153 (212)
+.++++++.+. .+|..+. +++++|++++|.+.+..|..+..+++|+.|++++|.+.. ..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555543 3333332 455555555555554444455555555555555554422 12344455555555555
Q ss_pred eeeeecChhccCCCCccEEEeeCCeee
Q 042715 154 KLSGQIPQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 154 ~i~~~~~~~~~~~~~L~~L~l~~n~~~ 180 (212)
++.+..+..+..+++|++|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 554333333444555555555555544
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.1e-17 Score=118.94 Aligned_cols=128 Identities=23% Similarity=0.294 Sum_probs=60.2
Q ss_pred cccCCCceEEccCCeeeecCCC------CCCCCCCccEEEcccccceecCC--ccccCCceEEcccceeeeeCCCcccCC
Q 042715 26 ENLENISTLWLEKNQLTGCIPF------EIGNLKNLSTLCLEHKQLTGRIP--SEIGKLKPIAASSNNFRGSIPQTCKNE 97 (212)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~l~l~~n~~~~~~~~~~~~~ 97 (212)
.....++.++++.+.+.+..|. .+..+++|++|++++|.+.. ++ ..+++|++|++++|.+. .++..+..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 3444555555555555444333 44445555555555555442 22 01123333334333333 233333444
Q ss_pred CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC----cccCCcccccEEEccCCeeee
Q 042715 98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGNLIVLESLDLSNNKLSG 157 (212)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~L~~L~l~~n~i~~ 157 (212)
++|++|++++|.+.+ +| .+..+++|+.|++++|.+.. ..+..+++|++|++++|.+.+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 556666666666553 32 34455555555555555432 134455555555555555543
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=7.3e-18 Score=119.82 Aligned_cols=126 Identities=21% Similarity=0.289 Sum_probs=100.5
Q ss_pred eeecEEEccCCccccccCc------cccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCcc---ccC
Q 042715 5 FDIIYIKLSGNQLTGPIPY------WLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSE---IGK 75 (212)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~ 75 (212)
+.++.++++.+.+.+..|. .+..+++|++|++++|.+.. .| .+..+++|+.|++++|.+. .+|.. +++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 4555556666666555554 89999999999999999985 55 8888999999999999998 66653 357
Q ss_pred CceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCC-cccccCCcccEEEccCCCCC
Q 042715 76 LKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVP-KSLASCTELKFLNLVSEGIF 135 (212)
Q Consensus 76 l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~ 135 (212)
|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 8999999999875 33 57778899999999999884222 36788999999999999763
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=7.8e-14 Score=106.51 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=132.8
Q ss_pred ceeecEEEccCCccccccCccccc-cCCCceEEccCCeee--------------------ecCCCCCCC--------CCC
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLEN-LENISTLWLEKNQLT--------------------GCIPFEIGN--------LKN 54 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~--------------------~~~~~~~~~--------l~~ 54 (212)
+.+++.|.++++- ...-...+.. +++|++||+++|.+. .....+|.. +++
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 4567888887642 2111123333 788999999999987 344566777 888
Q ss_pred ccEEEccccccee---cCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcc----cccCCccc---------
Q 042715 55 LSTLCLEHKQLTG---RIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLL----EGRVPKSL--------- 118 (212)
Q Consensus 55 L~~L~l~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~--------- 118 (212)
|+.+++.. .+.. .....+.+|+++.+.+|.+....+..|....++..+....... ......++
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~ 181 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence 88888887 5542 2334556788888888877656566666666666555444211 00000000
Q ss_pred -----------------------------------------ccCCcccEEEccCCCCC---CcccCCcccccEEEccCCe
Q 042715 119 -----------------------------------------ASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNK 154 (212)
Q Consensus 119 -----------------------------------------~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~ 154 (212)
..+++|+.+++.+|.+. ...|.++.+|+.+++.+|
T Consensus 182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n- 260 (329)
T 3sb4_A 182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN- 260 (329)
T ss_dssp EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-
T ss_pred EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-
Confidence 13689999999998663 377899999999999998
Q ss_pred eeeecChhccCCCCcc-EEEeeCCeeecCC-CCCcccccccccccccCCC
Q 042715 155 LSGQIPQQFGELTSLE-FFDVSDNLVIGPI-PQGKQFNTFETSSFDGNPG 202 (212)
Q Consensus 155 i~~~~~~~~~~~~~L~-~L~l~~n~~~~~~-~~~~~~~~l~~l~l~~n~~ 202 (212)
+......+|.++++|+ .+++.+ .+.... .....+++|+.+.+.+|..
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 7767788999999999 999998 554433 3344788999999877654
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.48 E-value=7.9e-16 Score=126.13 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=110.0
Q ss_pred CceeecEEEccCCccccccCccccc-cCC-CceEEccCCe-eee-cCCCCCCCCCCccEEEcccccceec-------CCc
Q 042715 3 LCFDIIYIKLSGNQLTGPIPYWLEN-LEN-ISTLWLEKNQ-LTG-CIPFEIGNLKNLSTLCLEHKQLTGR-------IPS 71 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~~~~-------~~~ 71 (212)
.+++|++|+++++.+....+..+.. +++ |++|++++|. +.. ..+.....+++|++|++++|.+.+. .+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4566777777777665444444444 333 7777777765 221 1111223567788888887776533 223
Q ss_pred cccCCceEEcccceee----eeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC-------------
Q 042715 72 EIGKLKPIAASSNNFR----GSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI------------- 134 (212)
Q Consensus 72 ~l~~l~~l~l~~n~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~------------- 134 (212)
.+++|++|++++|.+. ..++..+..+++|++|++++|.+. ..+..+..+++|+.|+++....
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4567778888777765 222333455677888888887766 3445556666666666653211
Q ss_pred ----------------CCcccCCcccccEEEccCCeeeeecC-hhccCCCCccEEEeeCCeeecCCCCC-cccccccccc
Q 042715 135 ----------------FSSTLGNLIVLESLDLSNNKLSGQIP-QQFGELTSLEFFDVSDNLVIGPIPQG-KQFNTFETSS 196 (212)
Q Consensus 135 ----------------~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~l~~l~ 196 (212)
.+..+..+++|++|++++|.+.+... ..+..+++|++|+++++.....++.. ..++++++|+
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 12233455667777777766543322 33466677777777632211112211 2456677777
Q ss_pred cc
Q 042715 197 FD 198 (212)
Q Consensus 197 l~ 198 (212)
+.
T Consensus 349 L~ 350 (592)
T 3ogk_B 349 IE 350 (592)
T ss_dssp EE
T ss_pred ee
Confidence 77
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=1.6e-13 Score=105.49 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=74.4
Q ss_pred EEEccCC-cccccCCcccccCCcccEEEccC-CCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeC
Q 042715 102 MIELSSN-LLEGRVPKSLASCTELKFLNLVS-EGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSD 176 (212)
Q Consensus 102 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 176 (212)
.++++++ .+. .+|. +..+.+|+.|++++ |.+.. ..|.++++|+.|+|++|++.+..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3466665 566 4566 66677777777775 65532 4567777888888888888777777778888888888888
Q ss_pred CeeecCCCCCcccccccccccccCCCccCCCC
Q 042715 177 NLVIGPIPQGKQFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 177 n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 208 (212)
|++.+.++.......|+.|++.+|++.|+|.+
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCcc
Confidence 88876666544434478888888888888763
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=3.2e-12 Score=100.06 Aligned_cols=163 Identities=12% Similarity=0.101 Sum_probs=71.3
Q ss_pred eecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccce---ecCCccccCCceEEcc
Q 042715 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT---GRIPSEIGKLKPIAAS 82 (212)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~l~l~ 82 (212)
+|+.+.+.+ .+......+|..|.+|+.+++.++.+......+|. ..+|+.+.+..+ +. ........+|+++.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 466666654 44434445666666666666666655544444444 355555555533 21 1122233344555554
Q ss_pred cceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--------CCcccCCcccccEEEccCCe
Q 042715 83 SNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--------FSSTLGNLIVLESLDLSNNK 154 (212)
Q Consensus 83 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--------~~~~~~~~~~L~~L~l~~n~ 154 (212)
.+ +...-...|.. .+|+.+.+.. .+......+|..+++|+.+.+.++.. ....|.+|++|+.+++.+ .
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~ 310 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S 310 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T
T ss_pred CC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c
Confidence 32 22122223333 3444444422 22222333444444444444444321 123344444444444442 2
Q ss_pred eeeecChhccCCCCccEEEee
Q 042715 155 LSGQIPQQFGELTSLEFFDVS 175 (212)
Q Consensus 155 i~~~~~~~~~~~~~L~~L~l~ 175 (212)
+......+|.++.+|+.+.+.
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEEC
T ss_pred eEEEhhhhhcCCCCccEEEEC
Confidence 332333444444444444443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2.2e-13 Score=94.26 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=54.1
Q ss_pred CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC---cccCCcccccEEEccCCeeeeecChhccCCCCccEEEe
Q 042715 98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS---STLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDV 174 (212)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 174 (212)
+++++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+.++++|++|++++|++.+..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 455666666666664445556666666666666665532 23456667777777777776555556677777777777
Q ss_pred eCCeeecCC
Q 042715 175 SDNLVIGPI 183 (212)
Q Consensus 175 ~~n~~~~~~ 183 (212)
++|++....
T Consensus 110 ~~N~~~c~c 118 (170)
T 3g39_A 110 LNNPWDCAC 118 (170)
T ss_dssp CSSCBCTTB
T ss_pred CCCCCCCCc
Confidence 777776443
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=4.1e-13 Score=93.24 Aligned_cols=100 Identities=21% Similarity=0.235 Sum_probs=58.8
Q ss_pred cEEEcccccceecCCccc-cCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC
Q 042715 56 STLCLEHKQLTGRIPSEI-GKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI 134 (212)
Q Consensus 56 ~~L~l~~~~~~~~~~~~l-~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 134 (212)
+.++++++.+. .+|..+ .++++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCC-ccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 45666666665 444433 3556666666666655555566666666666666666644334455666666666666655
Q ss_pred CC---cccCCcccccEEEccCCeee
Q 042715 135 FS---STLGNLIVLESLDLSNNKLS 156 (212)
Q Consensus 135 ~~---~~~~~~~~L~~L~l~~n~i~ 156 (212)
.. ..+..+++|++|++++|.+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ceeCHHHhccccCCCEEEeCCCCcc
Confidence 32 23555666666666666665
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=1.1e-11 Score=96.97 Aligned_cols=177 Identities=13% Similarity=0.111 Sum_probs=130.6
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccc--eecCCccccCCce
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQL--TGRIPSEIGKLKP 78 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~ 78 (212)
|.+|++|+.+++.++.+......+|. +.+|+.+.+..+ +......+|..+++|+.+.+..+-- ....... .+|++
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSE
T ss_pred hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccE
Confidence 56788999999998888855555666 689999999855 5657778899999999999886521 1122222 56788
Q ss_pred EEcccceeeeeCCCcccCCCcccEEEccCCccc-----ccCCcccccCCcccEEEccCCC--CCCcccCCcccccEEEcc
Q 042715 79 IAASSNNFRGSIPQTCKNEANLAMIELSSNLLE-----GRVPKSLASCTELKFLNLVSEG--IFSSTLGNLIVLESLDLS 151 (212)
Q Consensus 79 l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~L~~L~l~ 151 (212)
+.+. +.+...-...|..+++|+.+.+.++.+. ...+.+|..|++|+.+.+..+- +....|.+|.+|+.+++.
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEEC
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEEC
Confidence 8884 3344455677888899999999887553 3455678888999999988541 134778888999999996
Q ss_pred CCeeeeecChhccCCCCccEEEeeCCeeecCC
Q 042715 152 NNKLSGQIPQQFGELTSLEFFDVSDNLVIGPI 183 (212)
Q Consensus 152 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 183 (212)
.+ +......+|.++ +|+.+++.+|......
T Consensus 332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp TT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 55 555667888888 8999999998765433
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.41 E-value=6.4e-15 Score=120.74 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=16.9
Q ss_pred CCCCccEEEeeCCeeecCCCCCc--cccccccccccc
Q 042715 165 ELTSLEFFDVSDNLVIGPIPQGK--QFNTFETSSFDG 199 (212)
Q Consensus 165 ~~~~L~~L~l~~n~~~~~~~~~~--~~~~l~~l~l~~ 199 (212)
.+++|++|+++.|.+++...... .+++++.+++.+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEee
Confidence 35555555555555543221111 245566666653
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=1.4e-14 Score=112.27 Aligned_cols=154 Identities=19% Similarity=0.219 Sum_probs=100.4
Q ss_pred cCCCceEEccCCeeeecCCCCC----C-CCCCccEEEcccccceec----CCccccCCceEEcccceeeeeCCCcc----
Q 042715 28 LENISTLWLEKNQLTGCIPFEI----G-NLKNLSTLCLEHKQLTGR----IPSEIGKLKPIAASSNNFRGSIPQTC---- 94 (212)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~~~~~----~~~~l~~l~~l~l~~n~~~~~~~~~~---- 94 (212)
+++|++|++++|.++......+ . ..++|+.|++++|.+... +...+.++++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3677888888877663222222 2 235788888888877532 22345567888888887754222222
Q ss_pred -cCCCcccEEEccCCccccc----CCcccccCCcccEEEccCCCCCC-------cccCCcccccEEEccCCeeeee----
Q 042715 95 -KNEANLAMIELSSNLLEGR----VPKSLASCTELKFLNLVSEGIFS-------STLGNLIVLESLDLSNNKLSGQ---- 158 (212)
Q Consensus 95 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~n~i~~~---- 158 (212)
...++|++|++++|.++.. ++..+...++|++|++++|.+.. ..+...++|++|+|++|.|++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2346788888888887632 33344667788888888887643 3345667888888888888753
Q ss_pred cChhccCCCCccEEEeeCCeeec
Q 042715 159 IPQQFGELTSLEFFDVSDNLVIG 181 (212)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~n~~~~ 181 (212)
++..+...++|++|+|++|.+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 33445566888888888888753
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.32 E-value=4.5e-15 Score=121.66 Aligned_cols=129 Identities=15% Similarity=0.126 Sum_probs=75.6
Q ss_pred ccCCceEEcccceeeeeCCCcc-cCCCcccEEEcc--C----Ccccc-----cCCcccccCCcccEEEccCCCCCC---c
Q 042715 73 IGKLKPIAASSNNFRGSIPQTC-KNEANLAMIELS--S----NLLEG-----RVPKSLASCTELKFLNLVSEGIFS---S 137 (212)
Q Consensus 73 l~~l~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~---~ 137 (212)
+++|++|.+..+.++......+ ..+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .+.. .
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 4455666555555443222222 235677777777 2 23331 1111245667778887765 3322 1
Q ss_pred ccC-CcccccEEEccCCeeeeecChhc-cCCCCccEEEeeCCeeecCCCC--CcccccccccccccCCC
Q 042715 138 TLG-NLIVLESLDLSNNKLSGQIPQQF-GELTSLEFFDVSDNLVIGPIPQ--GKQFNTFETSSFDGNPG 202 (212)
Q Consensus 138 ~~~-~~~~L~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~--~~~~~~l~~l~l~~n~~ 202 (212)
.+. .+++|+.|++++|.+++.....+ ..+++|++|++++|.+.+.... ...+++++.+++.+|+.
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 122 26778888888888765544444 5678888888888887432221 22567888888888875
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=7.6e-15 Score=113.83 Aligned_cols=176 Identities=16% Similarity=0.121 Sum_probs=121.6
Q ss_pred ceeecEEEccCCccccccCcccccc-----CCCceEEccCCeeeecCCCCC-CCCCCccEEEcccccceecCCc------
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLENL-----ENISTLWLEKNQLTGCIPFEI-GNLKNLSTLCLEHKQLTGRIPS------ 71 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~------ 71 (212)
++.|++|++++|.++......+... .+|++|++++|.++......+ ..+++|+.|++++|.++.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3578999999999874443333333 799999999999864322222 3457899999999988643221
Q ss_pred --cccCCceEEcccceeeee----CCCcccCCCcccEEEccCCccccc----CCcccccCCcccEEEccCCCCCC-----
Q 042715 72 --EIGKLKPIAASSNNFRGS----IPQTCKNEANLAMIELSSNLLEGR----VPKSLASCTELKFLNLVSEGIFS----- 136 (212)
Q Consensus 72 --~l~~l~~l~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~----- 136 (212)
..++|++|++++|.++.. ++..+...++|++|++++|.+.+. ++..+...++|+.|++++|.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 235789999999998642 233446678999999999988743 24556777899999999998854
Q ss_pred --cccCCcccccEEEccCCeeeeecChhccCCCC-----ccEEE--eeCCee
Q 042715 137 --STLGNLIVLESLDLSNNKLSGQIPQQFGELTS-----LEFFD--VSDNLV 179 (212)
Q Consensus 137 --~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~-----L~~L~--l~~n~~ 179 (212)
..+...+.|++|+|++|.|.+.....+..+.. ++.+. +..+.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 22345688999999999998655544443321 55555 555544
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.31 E-value=2.7e-14 Score=117.07 Aligned_cols=194 Identities=14% Similarity=0.089 Sum_probs=95.2
Q ss_pred ceeecEEEccCCccccccCcccc-ccCCCceEEccCC-eeeec-CCCCCCCCCCccEEEcccccceecC-------Cccc
Q 042715 4 CFDIIYIKLSGNQLTGPIPYWLE-NLENISTLWLEKN-QLTGC-IPFEIGNLKNLSTLCLEHKQLTGRI-------PSEI 73 (212)
Q Consensus 4 l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~-------~~~l 73 (212)
+++|++|+++++.+.+..+..+. .+++|++|++++| .+... .+..+..+++|++|++++|.+.... +..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34555555555555433333333 4556666666555 23211 2222234556666666655544221 1233
Q ss_pred cCCceEEcccce--eee-eCCCcccCCCcccEEEccCC-cccccCCcccccCCcccEEEccCCCC---------------
Q 042715 74 GKLKPIAASSNN--FRG-SIPQTCKNEANLAMIELSSN-LLEGRVPKSLASCTELKFLNLVSEGI--------------- 134 (212)
Q Consensus 74 ~~l~~l~l~~n~--~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~--------------- 134 (212)
++|++|++++|. +.. .+...+..+++|++|++++| .+. ..+..+..+++|+.|++..+..
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 355566665554 110 01111123456666666655 222 2344444555555555433210
Q ss_pred ------------------CCcccCCcccccEEEccCCeeeeec-ChhccCCCCccEEEeeCCeeec-CCCCCc-cccccc
Q 042715 135 ------------------FSSTLGNLIVLESLDLSNNKLSGQI-PQQFGELTSLEFFDVSDNLVIG-PIPQGK-QFNTFE 193 (212)
Q Consensus 135 ------------------~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~~~~-~~~~~~-~~~~l~ 193 (212)
.+..+..+++|++|++++|.+.+.. ...+..+++|++|++++| +.. .++... .+++++
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 0111124677888888888865432 233557788888888887 321 111111 367788
Q ss_pred cccccc
Q 042715 194 TSSFDG 199 (212)
Q Consensus 194 ~l~l~~ 199 (212)
++++.+
T Consensus 342 ~L~L~~ 347 (594)
T 2p1m_B 342 ELRVFP 347 (594)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 888744
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.7e-11 Score=94.09 Aligned_cols=86 Identities=22% Similarity=0.202 Sum_probs=48.2
Q ss_pred ccCCCcccEEEccC-CcccccCCcccccCCcccEEEccCCCCC---CcccCCcccccEEEccCCeeeeecChhccCCCCc
Q 042715 94 CKNEANLAMIELSS-NLLEGRVPKSLASCTELKFLNLVSEGIF---SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSL 169 (212)
Q Consensus 94 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L 169 (212)
+..+++|++|++++ |.+.+..+..|+.+++|+.|++++|.+. +..|.++++|++|+|++|++.+..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44455566666654 5555444455556666666666666542 23455566666666666666643334444444 6
Q ss_pred cEEEeeCCeee
Q 042715 170 EFFDVSDNLVI 180 (212)
Q Consensus 170 ~~L~l~~n~~~ 180 (212)
+.|++++|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 66666666654
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=6.2e-10 Score=85.82 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=83.3
Q ss_pred ccccCCCceEEccCCeee---------ecCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCccc
Q 042715 25 LENLENISTLWLEKNQLT---------GCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCK 95 (212)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~ 95 (212)
...+++|+.|.+.+.... ..+...+..+|+|+.|.+.++.-....+-..++|++|.+..+.+.......+.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHH
Confidence 445677777777553211 01112234567777777766621111111355677777776665432212222
Q ss_pred --CCCcccEEEccCC--ccccc-----CCccc--ccCCcccEEEccCCCCCC---cc---cCCcccccEEEccCCeeeee
Q 042715 96 --NEANLAMIELSSN--LLEGR-----VPKSL--ASCTELKFLNLVSEGIFS---ST---LGNLIVLESLDLSNNKLSGQ 158 (212)
Q Consensus 96 --~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~n~~~~---~~---~~~~~~L~~L~l~~n~i~~~ 158 (212)
.+++|+.|+++.+ ...+. +...+ ..+++|+.|++.+|.+.. .. ...+++|++|+|+.|.+.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 4567777776421 11100 11112 246778888887776532 11 12467788888888877653
Q ss_pred c----ChhccCCCCccEEEeeCCeee
Q 042715 159 I----PQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 159 ~----~~~~~~~~~L~~L~l~~n~~~ 180 (212)
. +..+..+++|+.|++++|.+.
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhhcccCCcceEEECCCCcCC
Confidence 2 222234577888888887765
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.92 E-value=5.4e-08 Score=75.96 Aligned_cols=195 Identities=14% Similarity=0.100 Sum_probs=100.3
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccce-ecCCccccCCceE
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT-GRIPSEIGKLKPI 79 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~l 79 (212)
|.+|++|+.+.+.++-.. .....|..+.+|+.+.+..+ +......+|..+..|+.+.+..+... +.....-.+++++
T Consensus 158 F~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i 235 (394)
T 4fs7_A 158 FATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNI 235 (394)
T ss_dssp TTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEE
T ss_pred hcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceE
Confidence 345666666666544322 34445666666666666554 23344455666666665555443221 1111111233344
Q ss_pred EcccceeeeeCCCcccCCCcccEEEccCCccc--------------------ccCCcccccCCcccEEEccCCC--CCCc
Q 042715 80 AASSNNFRGSIPQTCKNEANLAMIELSSNLLE--------------------GRVPKSLASCTELKFLNLVSEG--IFSS 137 (212)
Q Consensus 80 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~~~~~~~~~~~~L~~L~l~~n~--~~~~ 137 (212)
.+.... ...-...+.....++.+.+..+... .....++..+.+|+.+.+..+- +-..
T Consensus 236 ~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~I~~~ 314 (394)
T 4fs7_A 236 IIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFIGEE 314 (394)
T ss_dssp EECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCCEECTT
T ss_pred EECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccccceechh
Confidence 332211 1111123333444444444333211 0112345566677777765542 1346
Q ss_pred ccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCCeeecCCC-CCcccccccccccccC
Q 042715 138 TLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP-QGKQFNTFETSSFDGN 200 (212)
Q Consensus 138 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~l~~l~l~~n 200 (212)
.|.++.+|+.+++..+ +......+|.++.+|+.+++..+ +..... +.....+|+.+.+..+
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 6778888888888654 55455678888888888888766 432222 2235566777666443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=6.1e-10 Score=85.85 Aligned_cols=171 Identities=13% Similarity=0.117 Sum_probs=113.6
Q ss_pred CceeecEEEccCCccc---------cccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCC---
Q 042715 3 LCFDIIYIKLSGNQLT---------GPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIP--- 70 (212)
Q Consensus 3 ~l~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--- 70 (212)
++++|+.|.+.+.... ..+...+..+|+|+.|.++++.-. ..+. + .+++|+.|++..+.+.....
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 3578999988764321 124455677899999999887312 2332 3 38999999999887753221
Q ss_pred --ccccCCceEEcccc--eeee-----eCCCcc--cCCCcccEEEccCCcccccCCccc---ccCCcccEEEccCCCCCC
Q 042715 71 --SEIGKLKPIAASSN--NFRG-----SIPQTC--KNEANLAMIELSSNLLEGRVPKSL---ASCTELKFLNLVSEGIFS 136 (212)
Q Consensus 71 --~~l~~l~~l~l~~n--~~~~-----~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~ 136 (212)
..+++|++|.++.+ ...+ .+...+ ..+++|+.|.+.+|.+.+..+..+ ..+++|++|+++.|.+..
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 25788999987532 1100 111122 246899999999998874332223 257899999999998754
Q ss_pred -------cccCCcccccEEEccCCeeeeecChhccC-CCCccEEEeeCCe
Q 042715 137 -------STLGNLIVLESLDLSNNKLSGQIPQQFGE-LTSLEFFDVSDNL 178 (212)
Q Consensus 137 -------~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~~n~ 178 (212)
..+..+++|+.|+++.|.+++.....+.. + ...++++.++
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 22345789999999999998655444443 2 3568888876
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.72 E-value=6.1e-07 Score=69.97 Aligned_cols=103 Identities=16% Similarity=0.263 Sum_probs=49.3
Q ss_pred cCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC--CCCcccCCcccccEEEccCCeeeeecChhccCCCCccEE
Q 042715 95 KNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG--IFSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFF 172 (212)
Q Consensus 95 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 172 (212)
..+..|+.+.+..+... ....++..+..|+.+.+...- +-...|.+|.+|+.+++..+ ++.....+|.++.+|+.+
T Consensus 262 ~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred eecccccEEecccccce-ecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 33444555554433221 223344445555555554321 12245566666666666544 333445566666666666
Q ss_pred EeeCCeeecCCCC-CcccccccccccccC
Q 042715 173 DVSDNLVIGPIPQ-GKQFNTFETSSFDGN 200 (212)
Q Consensus 173 ~l~~n~~~~~~~~-~~~~~~l~~l~l~~n 200 (212)
.+..+ +...... .....+|+.+.+.++
T Consensus 340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 340 AIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred EECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 66544 3222111 124455666665554
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.62 E-value=6.1e-07 Score=69.98 Aligned_cols=171 Identities=16% Similarity=0.130 Sum_probs=106.9
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCeee---------------------ecCCCCCCCCCCccEEE
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLT---------------------GCIPFEIGNLKNLSTLC 59 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---------------------~~~~~~~~~l~~L~~L~ 59 (212)
|.+|.+|+.+.+..+ +......+|..+..|+.+.+..+... .....+|..+..++.+.
T Consensus 181 F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 181 FSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESIS 259 (394)
T ss_dssp TTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEE
T ss_pred ccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEE
Confidence 456778888887665 33344556777777777766554322 11223344444455444
Q ss_pred cccccce--ecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCC--CC
Q 042715 60 LEHKQLT--GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEG--IF 135 (212)
Q Consensus 60 l~~~~~~--~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~ 135 (212)
+..+... .........+..+...... .....+..+.+|+.+.+..+ +......+|..+.+|+.+++..+- +-
T Consensus 260 ~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~ 335 (394)
T 4fs7_A 260 IQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIG 335 (394)
T ss_dssp ECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEEC
T ss_pred cCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEh
Confidence 4433221 1111122233333333322 22245667788999988765 443556788899999999997652 23
Q ss_pred CcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCC
Q 042715 136 SSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177 (212)
Q Consensus 136 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 177 (212)
...|.+|.+|+.+++..+ +......+|.++.+|+.+++..+
T Consensus 336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 478899999999999877 66567789999999999998755
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=9.7e-08 Score=65.64 Aligned_cols=81 Identities=7% Similarity=0.080 Sum_probs=62.4
Q ss_pred CcccEEEccCCcccccCCcccccCCcccEEEccCCCCCC----cccCC----cccccEEEccCC-eeeeecChhccCCCC
Q 042715 98 ANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGIFS----STLGN----LIVLESLDLSNN-KLSGQIPQQFGELTS 168 (212)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~----~~~L~~L~l~~n-~i~~~~~~~~~~~~~ 168 (212)
..|++|+++++.+++.--..+..+++|+.|++++|..+. ..+.. +++|++|+|++| +|++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 478999999998875544566788899999999986543 22333 347999999998 588766667788999
Q ss_pred ccEEEeeCCe
Q 042715 169 LEFFDVSDNL 178 (212)
Q Consensus 169 L~~L~l~~n~ 178 (212)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=1.7e-08 Score=70.46 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=72.2
Q ss_pred CCCCCCCccEEEcccc-cceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEccCCccccc----CCcccccCC
Q 042715 48 EIGNLKNLSTLCLEHK-QLTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGR----VPKSLASCT 122 (212)
Q Consensus 48 ~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~ 122 (212)
.+...+.|++|++++| .+....... +...+...++|++|++++|.+.+. +...+...+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~-----------------l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~ 93 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKA-----------------CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN 93 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHH-----------------HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHH-----------------HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC
Confidence 3455677777777777 665221111 112233345677777777776532 223344556
Q ss_pred cccEEEccCCCCCC-------cccCCcccccEEEc--cCCeeeee----cChhccCCCCccEEEeeCCeee
Q 042715 123 ELKFLNLVSEGIFS-------STLGNLIVLESLDL--SNNKLSGQ----IPQQFGELTSLEFFDVSDNLVI 180 (212)
Q Consensus 123 ~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l--~~n~i~~~----~~~~~~~~~~L~~L~l~~n~~~ 180 (212)
+|++|++++|.+.. ..+...+.|++|++ ++|.+.+. +...+...++|++|++++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 77888888877643 34556677888888 77888643 3445556688888888888764
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=5.1e-09 Score=73.19 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=72.4
Q ss_pred cCccccccCCCceEEccCC-eeee----cCCCCCCCCCCccEEEcccccceecCCccccCCceEEcccceeeeeCCCccc
Q 042715 21 IPYWLENLENISTLWLEKN-QLTG----CIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNFRGSIPQTCK 95 (212)
Q Consensus 21 ~~~~~~~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~ 95 (212)
+...+...++|++|++++| .+.. .+...+...++|++|++++|.+.......+ ...+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l-----------------~~~L~ 90 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL-----------------AEMLK 90 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH-----------------HHHHH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH-----------------HHHHH
Confidence 3445667888999999998 7662 233455667889999999998763221111 11222
Q ss_pred CCCcccEEEccCCccccc----CCcccccCCcccEEEc--cCCCCCC-------cccCCcccccEEEccCCeee
Q 042715 96 NEANLAMIELSSNLLEGR----VPKSLASCTELKFLNL--VSEGIFS-------STLGNLIVLESLDLSNNKLS 156 (212)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~n~~~~-------~~~~~~~~L~~L~l~~n~i~ 156 (212)
..++|++|++++|.+.+. +...+...+.|++|++ ++|.+.+ ..+...+.|++|++++|.+.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 334566666666666532 2334455566777777 6666533 23334567788888877765
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.26 E-value=3.5e-05 Score=59.60 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=85.5
Q ss_pred ccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccce--ecCCccccCCceEEcccceeeeeCCCcccCCCcccE
Q 042715 25 LENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLT--GRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAM 102 (212)
Q Consensus 25 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~ 102 (212)
+..+..+..+.+...... ....++..+.+++.+.+..+-.. .........|+++.+..+ +...-...+....+++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccccccccceeE-EeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 444455555555443322 34455666667777666544211 122223345566665443 23233445666677777
Q ss_pred EEccCCcccccCCcccccCCcccEEEccCCCC---CCcccCCcccccEEEccCCeeeeecChhccCCCCccEEEeeCC
Q 042715 103 IELSSNLLEGRVPKSLASCTELKFLNLVSEGI---FSSTLGNLIVLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDN 177 (212)
Q Consensus 103 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 177 (212)
+.+..+ +......+|..+.+|+.+.+..+.+ -...|.+|.+|+.+.+..+ +......+|.++.+|+.+.+..+
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 777553 3324445677777788877766543 2466777777888877654 44355667777777777776544
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.26 E-value=5.2e-06 Score=64.71 Aligned_cols=145 Identities=12% Similarity=0.147 Sum_probs=88.2
Q ss_pred ecEEEccCCccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccccceecCCccccCCceEEccccee
Q 042715 7 IIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQLTGRIPSEIGKLKPIAASSNNF 86 (212)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~l~l~~n~~ 86 (212)
+..+.+.. .+......+|..+..|+.+.+...... ....+|..+..|+.+.+... +. .
T Consensus 244 ~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~-~------------------ 301 (394)
T 4gt6_A 244 DPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-IT-E------------------ 301 (394)
T ss_dssp CSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC-E------------------
T ss_pred cceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCCc-cc-c------------------
Confidence 33444432 233345568899999999999876544 66778999999999888643 22 0
Q ss_pred eeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCC--CCCCcccCCcccccEEEccCCeeeeecChhcc
Q 042715 87 RGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSE--GIFSSTLGNLIVLESLDLSNNKLSGQIPQQFG 164 (212)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 164 (212)
.-...|.++.+|+.+.+..+ +......+|..|.+|+.+.+..+ .+-...|.+|.+|+.+++.++... . ..+.
T Consensus 302 --I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~~~ 375 (394)
T 4gt6_A 302 --LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQ-W--NAIS 375 (394)
T ss_dssp --ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHH-H--HTCB
T ss_pred --cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceee-h--hhhh
Confidence 11235566677777777654 44344567777788888887654 123467778888888888877543 1 3566
Q ss_pred CCCCccEEEeeCCee
Q 042715 165 ELTSLEFFDVSDNLV 179 (212)
Q Consensus 165 ~~~~L~~L~l~~n~~ 179 (212)
.+..|+.+.+..+.+
T Consensus 376 ~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 376 TDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCCCC----------
T ss_pred ccCCCCEEEeCCCCE
Confidence 677787777766544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=6e-07 Score=66.09 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=51.1
Q ss_pred cccCCCceEEccCCeeee--cCCCCCCCCCCccEEEcccccceec-CCcccc--CCceEEcccceeeeeCCC-------c
Q 042715 26 ENLENISTLWLEKNQLTG--CIPFEIGNLKNLSTLCLEHKQLTGR-IPSEIG--KLKPIAASSNNFRGSIPQ-------T 93 (212)
Q Consensus 26 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~--~l~~l~l~~n~~~~~~~~-------~ 93 (212)
..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.+. ....+. +|++|.+.+|++....+. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 457788888888887774 2334455678888888888877632 112333 677888888887654431 2
Q ss_pred ccCCCcccEEE
Q 042715 94 CKNEANLAMIE 104 (212)
Q Consensus 94 ~~~~~~L~~L~ 104 (212)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45667777764
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=1e-06 Score=64.85 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=42.9
Q ss_pred ccCCcccEEEccCCCCCC-----cccCCcccccEEEccCCeeeeecChhccCCC--CccEEEeeCCeeecCCC
Q 042715 119 ASCTELKFLNLVSEGIFS-----STLGNLIVLESLDLSNNKLSGQIPQQFGELT--SLEFFDVSDNLVIGPIP 184 (212)
Q Consensus 119 ~~~~~L~~L~l~~n~~~~-----~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~ 184 (212)
..++.|+.|++++|.+.. ..+..+++|+.|+|++|++.+. ..+..+. +|+.|+|++|++++..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 456778888888887644 2334677888888888888743 2233333 78888888888876554
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.18 E-value=1.3e-06 Score=57.21 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=33.7
Q ss_pred EEEccCCeee-eecChhccCCCCccEEEeeCCeeecCCCCCc-ccccccccccccCCCccCCCC
Q 042715 147 SLDLSNNKLS-GQIPQQFGELTSLEFFDVSDNLVIGPIPQGK-QFNTFETSSFDGNPGLCGEPL 208 (212)
Q Consensus 147 ~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~l~~l~l~~n~~~~~~~~ 208 (212)
.++.+++.++ ..+|..+ -+++++|+|++|++....+... .+++++.+.|.+|||.|+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 4555555553 1233221 1346666666666665444332 556667777777777777753
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.10 E-value=0.00014 Score=56.23 Aligned_cols=189 Identities=16% Similarity=0.046 Sum_probs=106.6
Q ss_pred eecEEEccCCccccccCccccccCCCceEEccCCeeee------------cCCCCCCCCCCccEEEcccccce--ecCCc
Q 042715 6 DIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQLTG------------CIPFEIGNLKNLSTLCLEHKQLT--GRIPS 71 (212)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~l~~L~~L~l~~~~~~--~~~~~ 71 (212)
+++.+.+..+ +.......|..+.+++.+.+....... .....+.....+..+.+...... .....
T Consensus 136 ~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~ 214 (379)
T 4h09_A 136 SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFS 214 (379)
T ss_dssp CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTT
T ss_pred eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccc
Confidence 3444444432 333445567777888777765542110 01112334444555544433221 11122
Q ss_pred cccCCceEEcccceeeeeCCCcccCCCcccEEEccCCcccccCCcccccCCcccEEEccCCCC--CCcccCCcccccEEE
Q 042715 72 EIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELSSNLLEGRVPKSLASCTELKFLNLVSEGI--FSSTLGNLIVLESLD 149 (212)
Q Consensus 72 ~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~~~~L~~L~ 149 (212)
...+++.+.+..+ +...-...+.....|+.+.+..+ +......++..+..|+.+.+..+-. ....|.++.+|+.+.
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccccc
Confidence 2334556655443 22233455667778888888665 4434456777788888888765421 236677888888888
Q ss_pred ccCCeeeeecChhccCCCCccEEEeeCCeeecCCC-CCcccccccccccc
Q 042715 150 LSNNKLSGQIPQQFGELTSLEFFDVSDNLVIGPIP-QGKQFNTFETSSFD 198 (212)
Q Consensus 150 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~l~~l~l~ 198 (212)
+.++.+......+|.++.+|+.+.+..+ +..... +.....+|+++.+.
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 8888777566778888888888888655 322221 22244556666553
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=7.7e-07 Score=61.16 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=51.9
Q ss_pred cCCCceEEccCCeeeecCCCCCCCCCCccEEEccccc-ceecCCccccCCceEEcccceeeeeCCCcccCCCcccEEEcc
Q 042715 28 LENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHKQ-LTGRIPSEIGKLKPIAASSNNFRGSIPQTCKNEANLAMIELS 106 (212)
Q Consensus 28 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~ 106 (212)
-.+|++||++++.++...-..+..+++|+.|++++|. ++......+..+ -...++|++|+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-----------------~~~~~~L~~L~Ls 122 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-----------------ENLQKSMLEMEII 122 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-----------------HHHHHHCCEEEEE
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-----------------ccccCCCCEEEcC
Confidence 3467788888877765444556677778888777774 442211111100 0001357777777
Q ss_pred CCc-ccccCCcccccCCcccEEEccCCCCC
Q 042715 107 SNL-LEGRVPKSLASCTELKFLNLVSEGIF 135 (212)
Q Consensus 107 ~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~ 135 (212)
+|. +++.--..+..+++|+.|+++++..+
T Consensus 123 ~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 123 SCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp SCTTCCHHHHHHGGGCTTCCEEEEESCTTC
T ss_pred CCCcCCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 763 55333334556777777777777543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.32 E-value=0.0004 Score=45.24 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=20.5
Q ss_pred cccEEEccCCeeeeecChhccCCCCccEEEeeCCee
Q 042715 144 VLESLDLSNNKLSGQIPQQFGELTSLEFFDVSDNLV 179 (212)
Q Consensus 144 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~ 179 (212)
++++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455566666666544444555556666666666654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.16 E-value=8.2e-05 Score=52.03 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=54.4
Q ss_pred ccCCCcccEEEccCCcccccCC----cccccCCcccEEEccCCCCCC-------cccCCcccccEEEccCC---eeee--
Q 042715 94 CKNEANLAMIELSSNLLEGRVP----KSLASCTELKFLNLVSEGIFS-------STLGNLIVLESLDLSNN---KLSG-- 157 (212)
Q Consensus 94 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~n---~i~~-- 157 (212)
+..-+.|+.|++++|.+.+... ..+..-..|+.|+++.|.+.+ ..+...+.|++|+|+++ .+.+
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 3445677888888887764322 233344678888888887743 34455566888888754 3332
Q ss_pred --ecChhccCCCCccEEEeeCCee
Q 042715 158 --QIPQQFGELTSLEFFDVSDNLV 179 (212)
Q Consensus 158 --~~~~~~~~~~~L~~L~l~~n~~ 179 (212)
.+...+..-+.|..|+++.|.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 2345556667888888877754
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.56 E-value=0.00084 Score=46.91 Aligned_cols=83 Identities=11% Similarity=0.184 Sum_probs=61.0
Q ss_pred cCCCcccEEEccCC-cccc----cCCcccccCCcccEEEccCCCCCC-------cccCCcccccEEEccCCeeeee----
Q 042715 95 KNEANLAMIELSSN-LLEG----RVPKSLASCTELKFLNLVSEGIFS-------STLGNLIVLESLDLSNNKLSGQ---- 158 (212)
Q Consensus 95 ~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~L~~L~l~~n~i~~~---- 158 (212)
..-+.|++|+++++ .+.. .+..++..-..|+.|++++|.+.+ ..+...+.|++|+|+.|.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34567899999885 6653 233455555789999999998854 3344567899999999999753
Q ss_pred cChhccCCCCccEEEeeCC
Q 042715 159 IPQQFGELTSLEFFDVSDN 177 (212)
Q Consensus 159 ~~~~~~~~~~L~~L~l~~n 177 (212)
+.+++..-..|+.|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 4456667788999999876
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=84.47 E-value=1.5 Score=26.63 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=35.4
Q ss_pred CccccccCccccccCCCceEEccCCeeeecCCCCCCCCCCccEEEcccc
Q 042715 15 NQLTGPIPYWLENLENISTLWLEKNQLTGCIPFEIGNLKNLSTLCLEHK 63 (212)
Q Consensus 15 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 63 (212)
..+...-..+|.+|.+|+.+.+...- +.....+|..+.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 34555556688889999999887753 3356678888999988887654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.97 E-value=2.9 Score=25.36 Aligned_cols=39 Identities=13% Similarity=-0.021 Sum_probs=31.7
Q ss_pred CCCceeecEEEccCCccccccCccccccCCCceEEccCCe
Q 042715 1 ISLCFDIIYIKLSGNQLTGPIPYWLENLENISTLWLEKNQ 40 (212)
Q Consensus 1 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 40 (212)
|.+|.+|+.+.|..+ +...-..+|.+|.+|+.+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 678999999999864 444666789999999999997753
Done!