BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042716
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2
Length = 356
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK-LQPIKSLCTVIQLLPPSKQE 59
++L E DKL+ DA +R +E+Y ++ CC+ SK + PI+S C +++ PS ++
Sbjct: 132 VLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIED 191
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVIL-TGW 118
I VL + ++EG+ LP QLA ++A+ S NLR+A+ EA R YPF Q I T W
Sbjct: 192 ICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDW 251
Query: 119 EDDITNIATKIIEEQSPKQ 137
E + A I+ +Q+P++
Sbjct: 252 EVYLRETANAIVSQQTPQR 270
>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1
Length = 356
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK-LQPIKSLCTVIQLLPPSKQE 59
++L E DKL+ DA +R +E+Y ++ CC+ SK + PI+S C +++ PS ++
Sbjct: 132 VLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIED 191
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVIL-TGW 118
I VL + ++EG+ LP QLA ++A+ S NLR+A+ EA R YPF Q I T W
Sbjct: 192 ICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDW 251
Query: 119 EDDITNIATKIIEEQSPKQ 137
E + A I+ +Q+P++
Sbjct: 252 EVYLRETANAIVSQQTPQR 270
>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1
Length = 356
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK-LQPIKSLCTVIQLLPPSKQE 59
++L E DKL+ DA +R +E+Y ++ CC+ SK + PI+S C +++ PS ++
Sbjct: 132 VLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIED 191
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVIL-TGW 118
I VL + +EG+ LP LA ++A+ S NLR+A+ EA R YPF E Q I T W
Sbjct: 192 ICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDW 251
Query: 119 EDDITNIATKIIEEQSPKQ 137
E + A I+ +Q+P++
Sbjct: 252 EVYLRETANAIVSQQTPQR 270
>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=Dictyostelium discoideum
GN=rfc3 PE=3 SV=1
Length = 347
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK-LQPIKSLCTVIQLLPPSKQE 59
+IL E DKLS DA +R +E+Y ++ CC +K + PIKS C I++ PS++E
Sbjct: 132 VILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEE 191
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVILTGWE 119
I +VL +A E LP +LA +A S NLR A+ E+ + YPF ++ L WE
Sbjct: 192 IEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQSTELPLLDWE 251
Query: 120 DDITNIATKIIEEQSPKQ 137
+ I+ I EEQSP +
Sbjct: 252 NYISQIVKDCFEEQSPAR 269
>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=B14D6.460 PE=3 SV=1
Length = 352
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYK-GLNKVFFCCSDVSKLQPIKSLCTVIQLLPPSKQE 59
+++ EAD L+ DA +R +E+Y L + S + + PI+S C ++++ P+ +E
Sbjct: 132 VVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRVAAPTHKE 191
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI-LTGW 118
I +VL A++EG + L ++IA+ S NLR+A+ +EA N + I W
Sbjct: 192 ICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDSTPIPPPDW 251
Query: 119 EDDITNIATKIIEEQSPKQ 137
E I IA +I+EE +P +
Sbjct: 252 EALIGQIAKEIMEEHTPAR 270
>sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc5 PE=1 SV=1
Length = 358
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+++ AD+L+ DA +R +E+Y ++ + SK+ +PI+S ++++ P+ +E
Sbjct: 131 VVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTPEE 190
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAI---RSFEASRQMNYPFVE--GQVI 114
I+ V+ I +G++ P L IA+N NLR+AI + A N ++ Q+
Sbjct: 191 IILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQLIDTGAQLP 250
Query: 115 LTGWEDDITNIATKIIEEQSPKQ 137
L W+ I + +++EQSP +
Sbjct: 251 LPDWQTFIQQVGDSMLQEQSPAR 273
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
++L EAD +++DA +R L+E Y + + + SK+ PI+S C + P SKQ+
Sbjct: 108 VLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQD 167
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVILTG 117
++E L +IAE EG+ + + I + S+ ++R+AI +A+ + V+ + G
Sbjct: 168 VIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYLGKVTVDAVYRVVG 225
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
++L EAD ++ DA +R L+E Y + + SK+ +PI+S C V + P K++
Sbjct: 112 VLLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKED 171
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVILTG 117
++ L++IAEQE +++ + E I D S+ ++R+AI +A+ + V+ + G
Sbjct: 172 VISRLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAAAALGKVTVDSVYKVVG 229
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
++L EAD ++ DA +R +E Y + C+ +SK+ +PI+S + + P K++
Sbjct: 108 VLLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKED 167
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
+V L +IA+ E ++ + E I D ++ ++R+AI +AS
Sbjct: 168 VVARLAYIAKNEKVEYDQKALETIYDITQGDMRKAINILQAS 209
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+IL EAD ++ DA +R +E + + + SK+ +PI+S C V + P K +
Sbjct: 105 VILDEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGD 164
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVE 110
+ L +IA+QEGI + E I + S+ +LR+AI + +A+ ++ E
Sbjct: 165 AFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQAASAISRNVTE 215
>sp|Q5JHP2|RFCS_PYRKO Replication factor C small subunit OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rfcS PE=1
SV=1
Length = 866
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L EAD L+ DA +R +E + + C+ SK+ +PI+S C + + P ++
Sbjct: 654 IFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDED 713
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVILTG 117
I + + +IAE EG++L + + I ++ +LR+AI +A+ ++ + V L
Sbjct: 714 IAKRIRYIAENEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDTKITDENVFLVA 771
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L E D ++ DA +R +E Y + C+ SK+ PI+S C + + LP +
Sbjct: 106 IFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQ 165
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQV 113
I++ LE+IAE+E ++ E I ++ +LR+AI +++ + E +
Sbjct: 166 IIKRLEYIAEKENLEYEAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSI 219
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
IIL EAD ++ DA +R +E Y G+ + C+ V+++ P+ S C+ +
Sbjct: 137 IILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASN 196
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVILT 116
++ L FI+EQE ++ + E+I D S +LR+ I +++ + +G+ I +
Sbjct: 197 AIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITS 253
>sp|Q8U4J3|RFCS_PYRFU Replication factor C small subunit OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rfcS PE=1
SV=1
Length = 852
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L EAD L+ DA +R +E + + C+ SK+ +PI+S C + + P ++
Sbjct: 639 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDED 698
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVILTG 117
I + L +IAE EG++L + + I ++ ++R+AI +A+ ++ + V +
Sbjct: 699 IAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVA 756
>sp|O57852|RFCS_PYRHO Replication factor C small subunit OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rfcS PE=3 SV=1
Length = 855
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L EAD L+ DA +R +E + + C+ SK+ +PI+S C + + P ++
Sbjct: 641 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDED 700
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVILT 116
I + L +IAE EG++L + + I ++ ++R+AI +A+ ++ + V +
Sbjct: 701 IAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 757
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L EAD L++DA +R +E++ + C+ S++ PI+S C V + P
Sbjct: 112 IFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAA 171
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMN 105
+ E + IA+ EGI+L + + + ++R+AI +A+ M
Sbjct: 172 VDEQIRIIADTEGIELTDDGVDALVYAADGDMRKAINGLQAAAVMG 217
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L EAD L+ DA +R +ER+ + C+ SK+ +PI+S C V + S +
Sbjct: 115 IFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEA 174
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
I E LE+IA +G+ + E + ++ ++R+A+ S +A+
Sbjct: 175 IKERLEYIAGDQGLSITEGGYEALIYVAQGDMRKAVNSLQAA 216
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+IL EAD +++DA +R ++E Y + + VS++ PI S C V + P +
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSL 164
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMN 105
+ E L+FIA+ EG++L I + S+ ++R+AI + + N
Sbjct: 165 MAERLKFIAKNEGVELREDAINMIYELSEGDMRKAINLLQVAAATN 210
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+IL EAD +++DA +R ++E Y + + +S + +PI+S +I+ P K+
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEA 164
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFE 99
++ L +IAE EG+++ E I + ++ ++R+AI + +
Sbjct: 165 VISRLRYIAENEGVKISDDALETIYEFTQGDMRKAINALQ 204
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L EAD L++DA +R +ERY + C+ SK+ +PI+S C V + P + +
Sbjct: 106 IFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATD 165
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
I + IA+ EG+++ + + ++ ++R+AI + +++
Sbjct: 166 ITTGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSA 207
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+IL EAD +++DA +R ++E Y + + VS + +PI+S +I+ P K+
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEA 164
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFE 99
+ L +IAE EG+++ E I + ++ ++R+AI + +
Sbjct: 165 VFARLRYIAENEGVKVSDDALEAIYEFTQGDMRRAINALQ 204
>sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1
Length = 354
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+I+ EA+ L+ DA +R +E+Y ++ C +S + PIKS C +I+ PS E
Sbjct: 138 VIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSE 197
Query: 60 IVEVLEFIAEQEGIQL-PHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQ--VILT 116
I +L + E IQL + ++IA S NLR ++ E+ N ++ +I
Sbjct: 198 ISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKP 257
Query: 117 GWEDDITNIATKIIEEQS 134
W I + KI++E+S
Sbjct: 258 DWIIVIHKLTRKIVKERS 275
>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum
GN=rfc4 PE=3 SV=1
Length = 347
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
IIL EAD ++TDA +R +E + C+ +S++ P+ S C + P
Sbjct: 120 IILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVA 179
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVILTGWE 119
+E L+FI++QEGI+ + + I S ++R+AI +++ + F ++ E
Sbjct: 180 TIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSA----FRFFANKI----SE 231
Query: 120 DDITNIA 126
D I NIA
Sbjct: 232 DVIYNIA 238
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+IL EAD +++DA +R ++E Y + + +S + +PI+S +I+ P K+
Sbjct: 105 VILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEA 164
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFE 99
+ L +IA+ EG+++ E I + ++ ++R+AI + +
Sbjct: 165 VFARLRYIADNEGVKISDDALEAIYEFTQGDMRRAINALQ 204
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+IL EAD +++DA +R ++E Y + + VS++ PI S C V + P +
Sbjct: 105 VILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSL 164
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAI 95
+ E L IA+ EGI+L + I + S+ ++R+AI
Sbjct: 165 MAERLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAI 200
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+IL EAD +++DA +R ++E Y + + VS++ PI S C V + P +
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHL 164
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMN 105
+ E L++IA+ EG+++ + I + S+ ++R+AI + + N
Sbjct: 165 MAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINILQVAAATN 210
>sp|Q2NH89|RFCS_METST Replication factor C small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcS PE=3 SV=1
Length = 321
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L E D ++ DA +R +E Y + C+ SK+ PI+S C + + P
Sbjct: 103 IFLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAAN 162
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
I++ L++IA +EGI+ E I ++ ++R++I +AS
Sbjct: 163 IIKRLKYIASEEGIEAEQSALENIVYFTQGDMRKSINILQAS 204
>sp|Q5UQ72|RFCS4_MIMIV Putative replication factor C small subunit L510 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1
Length = 363
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
IIL EAD ++ +A +R ++E+Y + F C+ ++K+ IKS C+ + S +
Sbjct: 116 IILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDEC 175
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAI 95
+VE L I+ +E ++LP + I D S ++R+AI
Sbjct: 176 MVEKLNDISLKESMELPKNILHTIIDVSNGDMRKAI 211
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L EAD L++DA +R +ER+ + C+ S++ +PI+S C V + S +
Sbjct: 111 IFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEA 170
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
I + LE+IA+ + + + E + S+ ++R+A+ S +A+
Sbjct: 171 IRKRLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAA 212
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK-LQPIKSLCTVIQLLPPSKQE 59
I+L EAD ++ DA +R +E Y + C+ +SK ++PI+S + + P K++
Sbjct: 106 ILLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKED 165
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
+V L IA+ E ++ + E I D ++ ++R+AI +A+
Sbjct: 166 VVNRLIQIAKNEKVEFDPKGIETIFDITQGDMRKAINVIQAA 207
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+ L EAD L+TDA +R +E Y + C+ SK+ PI+S C + + P ++
Sbjct: 107 LFLDEADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREA 166
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
++E IA EG+ + + I + ++R+AI + + +
Sbjct: 167 VIEETRRIAAAEGLTVTEGALDAIVYVASGDMRKAINALQGA 208
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK-LQPIKSLCTVIQLLPPSKQE 59
+ L EAD L+ DA +R ++E+Y + C+ SK ++PI+S TV + P K+
Sbjct: 103 VFLDEADALTRDAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEA 162
Query: 60 IVEVLEFIAEQEGIQLPH--QLAEKIADNSKNNLRQAIRSFEASRQMN 105
E++ I + EG+ L + ++ + D ++ +LR+AI +A+ M+
Sbjct: 163 FRELINRIVKGEGLILENEDEIINALYDIAEGDLRKAINILQAAAMMS 210
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L EAD L+ DA +R +E Y + C+ VS++ +PI+S C V + P K+
Sbjct: 106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEA 165
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
+ + L I E+EG+++ E + S + R+AI + + +
Sbjct: 166 MKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGA 207
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L EAD L++DA +R +E++ + C+ SK+ +PI+S C V + S +
Sbjct: 115 IFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKA 174
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
I E LE+IA+++ + + E + ++ ++R+A+ S +A+
Sbjct: 175 IRERLEYIAKEQDLSITDGGYEALIYVAQGDMRKAVNSLQAA 216
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
++L EAD ++ DA +R +E Y + C+ +SK+ +PI+S + + P K++
Sbjct: 109 VLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKED 168
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
+V L +IA+ E + + E I D + ++R++I +A+
Sbjct: 169 VVNRLIYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAA 210
>sp|O29072|RFCL_ARCFU Replication factor C large subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcL PE=1 SV=1
Length = 479
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 30 VFFCCSDVSKLQP-IKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSK 88
+ +D KL P +++LC +I +KQ++ VLE IA +EGI++ + KIA+N+
Sbjct: 140 LILIANDPYKLSPELRNLCEMINFKRLTKQQVARVLERIALKEGIKVDKSVLLKIAENAG 199
Query: 89 NNLRQAIRSFEASRQMNYPFVEGQVILTGW--EDDITNIATKIIEEQSP 135
+LR AI F+A + V LT E DI + I + ++P
Sbjct: 200 GDLRAAINDFQALAEGKEELKPEDVFLTKRTQEKDIFRVMQMIFKTKNP 248
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L E+D L++DA +R +E+Y + + C+ SK+ PI+S C + + P ++
Sbjct: 104 IFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTED 163
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
+VE L+ I+E+E + L + I S+ ++R+AI + +
Sbjct: 164 LVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTA 205
>sp|A1RWU6|RFCL_THEPD Replication factor C large subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcL PE=3 SV=1
Length = 413
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 41/62 (66%)
Query: 39 KLQPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSF 98
KL+P++ LC +I+ K++I++VLE I +EG++ ++ IADN+K +LR AI
Sbjct: 152 KLRPLRDLCELIEFKKIGKRDIMKVLENICSKEGVECSREVLSAIADNAKGDLRAAINDL 211
Query: 99 EA 100
++
Sbjct: 212 QS 213
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L E+D L++DA +R +E+Y + + C+ SK+ PI+S C + + P ++
Sbjct: 104 IFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTED 163
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
+VE L+ I+E+E + L + I S+ ++R+AI + +
Sbjct: 164 LVENLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTA 205
>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc2 PE=1 SV=1
Length = 340
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
IIL EAD ++ DA +R +E Y + + C+ ++++ P+ S C+ + P +
Sbjct: 127 IILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNEN 186
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMN 105
+V+ LEFIA + + + + + + S ++R+AI +++ ++
Sbjct: 187 MVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLH 232
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L E+D L++DA +R +E+Y + + C+ SK+ PI+S C + + P ++
Sbjct: 104 IFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTED 163
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
+VE L+ I+E+E + L + I S+ ++R+AI + +
Sbjct: 164 LVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTA 205
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L E+D L++DA +R +E+Y + + C+ SK+ PI+S C + + P ++
Sbjct: 104 IFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTED 163
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
+VE L+ I+E+E + L + I S+ ++R+AI + +
Sbjct: 164 LVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTA 205
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+IL EAD +++DA +R ++E Y + + VS++ PI S C V + P +
Sbjct: 105 VILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHL 164
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAI 95
+ E L IA EG++L + I + S+ ++R+AI
Sbjct: 165 MAERLREIARSEGVELKDDAIDLIYEISEGDMRKAI 200
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L EAD L++DA +R +E++ + C+ S++ PI+S C V + P +
Sbjct: 114 IFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDA 173
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
+ E + IA +E I+L + + + ++R+AI +A+
Sbjct: 174 VAEEIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAA 215
>sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subunit L478 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L478 PE=3 SV=1
Length = 370
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK-LQPIKSLCTVIQLLPPSKQE 59
I++ + L+ ++ +R +ERY + C+++SK + P++S C + P+ +
Sbjct: 130 IVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFCVPLPTIEN 189
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAI 95
I V+++IA E I+L + I DN NNL+ AI
Sbjct: 190 INTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAI 225
>sp|Q9HI47|RFCS_THEAC Replication factor C small subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rfcS PE=3 SV=2
Length = 318
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+ L EAD+L+ +A +R +E Y + F C+ SK+ PI+S V++ P +
Sbjct: 104 LFLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEY 163
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEA 100
I L+ IA+ EG Q+ + + + S ++R+AI +A
Sbjct: 164 ISRKLQEIAKNEGFQIDEESMHALVEVSAGDMRKAINVLQA 204
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
I L E+D L++DA +R +E+Y + + C+ SK+ PI+S C + + P ++
Sbjct: 104 IFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTED 163
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAI 95
+V+ L+ I+E+E I + + I S+ ++R+AI
Sbjct: 164 LVKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAI 199
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+ L EAD L+ DA +R +E Y + C+ SK+ PI+S C + + P + +
Sbjct: 107 LFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEA 166
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
I E + IA++EGI + I S ++R+AI + + +
Sbjct: 167 ISEEIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQGA 208
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK-LQPIKSLCTVIQLLPPSKQE 59
+ L EAD+L+ +A +R +E Y + F C+ SK + PI+S V++ P +
Sbjct: 104 LFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEF 163
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEA 100
I + L IA+ EG + + E + + S ++R+AI +A
Sbjct: 164 IKKKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQA 204
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE 59
+ L EAD L+TDA +R +E Y + C+ +K+ PI+S C + + P +Q
Sbjct: 107 LFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQA 166
Query: 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101
+ E+++ I+ + + + ++ + I ++ ++R+AI + + +
Sbjct: 167 VSEMVKRISADQNLTVTEEVIDAIFYVAQGDMRKAINALQGA 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,881,668
Number of Sequences: 539616
Number of extensions: 1547478
Number of successful extensions: 5518
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 5254
Number of HSP's gapped (non-prelim): 248
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)