Query 042716
Match_columns 137
No_of_seqs 137 out of 1180
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2035 Replication factor C, 100.0 2.1E-31 4.7E-36 201.9 13.2 137 1-137 131-270 (351)
2 KOG0989 Replication factor C, 100.0 2.3E-30 4.9E-35 198.4 10.3 135 1-135 133-272 (346)
3 KOG0991 Replication factor C, 100.0 1.9E-29 4.2E-34 187.9 9.7 131 1-132 117-252 (333)
4 PRK04132 replication factor C 99.9 9.3E-27 2E-31 199.3 13.7 132 1-132 634-769 (846)
5 PLN03025 replication factor C 99.9 5.6E-26 1.2E-30 177.5 13.2 133 1-133 103-239 (319)
6 PRK07003 DNA polymerase III su 99.9 2E-25 4.4E-30 188.3 13.2 133 1-133 123-260 (830)
7 PRK14956 DNA polymerase III su 99.9 1.8E-25 3.9E-30 181.7 12.2 133 1-133 125-262 (484)
8 COG2812 DnaX DNA polymerase II 99.9 5.1E-25 1.1E-29 180.2 10.3 133 1-133 123-260 (515)
9 PRK12323 DNA polymerase III su 99.9 1.1E-24 2.4E-29 181.7 11.3 132 1-132 128-264 (700)
10 PRK14958 DNA polymerase III su 99.9 3.4E-24 7.5E-29 176.4 11.5 133 1-133 123-260 (509)
11 PRK08451 DNA polymerase III su 99.9 8.8E-24 1.9E-28 174.2 13.7 133 1-133 121-258 (535)
12 PRK07994 DNA polymerase III su 99.9 1.1E-23 2.4E-28 176.7 12.9 113 1-113 123-237 (647)
13 PRK14952 DNA polymerase III su 99.9 1.3E-23 2.8E-28 175.0 13.2 133 1-133 122-260 (584)
14 PRK14949 DNA polymerase III su 99.9 2.7E-23 5.8E-28 177.9 12.9 132 1-132 123-259 (944)
15 PRK14960 DNA polymerase III su 99.9 5.2E-23 1.1E-27 172.0 12.4 133 1-133 122-259 (702)
16 PRK14951 DNA polymerase III su 99.9 5.5E-23 1.2E-27 172.0 12.6 133 1-133 128-265 (618)
17 PRK14964 DNA polymerase III su 99.9 5E-23 1.1E-27 168.4 12.0 134 1-134 120-258 (491)
18 PRK14965 DNA polymerase III su 99.9 5E-23 1.1E-27 171.8 11.6 133 1-133 123-260 (576)
19 PRK07764 DNA polymerase III su 99.9 7.3E-23 1.6E-27 175.9 12.8 133 1-133 124-262 (824)
20 PRK14961 DNA polymerase III su 99.9 1.5E-22 3.4E-27 160.7 13.0 133 1-133 123-260 (363)
21 PRK14957 DNA polymerase III su 99.9 3E-22 6.6E-27 165.7 13.4 132 1-132 123-259 (546)
22 PRK08691 DNA polymerase III su 99.9 1.8E-22 3.9E-27 169.7 12.2 133 1-133 123-260 (709)
23 PRK14963 DNA polymerase III su 99.9 5E-22 1.1E-26 163.5 14.0 134 1-134 120-257 (504)
24 PRK14969 DNA polymerase III su 99.9 2.6E-22 5.6E-27 166.0 12.1 133 1-133 123-260 (527)
25 KOG0990 Replication factor C, 99.9 1.7E-22 3.7E-27 155.8 10.0 133 1-133 135-276 (360)
26 PRK05563 DNA polymerase III su 99.9 5.1E-22 1.1E-26 165.3 12.8 133 1-133 123-260 (559)
27 PRK06645 DNA polymerase III su 99.9 6.1E-22 1.3E-26 162.8 13.1 134 1-134 132-273 (507)
28 PRK14971 DNA polymerase III su 99.9 4.7E-22 1E-26 166.9 12.3 133 1-133 125-262 (614)
29 PRK09111 DNA polymerase III su 99.9 3E-21 6.6E-26 161.4 13.5 133 1-133 136-273 (598)
30 PRK07133 DNA polymerase III su 99.9 2.3E-21 5E-26 163.9 12.5 132 1-132 122-258 (725)
31 PRK05896 DNA polymerase III su 99.9 1.9E-21 4E-26 161.8 11.6 133 1-133 123-260 (605)
32 PRK14948 DNA polymerase III su 99.9 4E-21 8.6E-26 161.4 13.5 132 1-132 125-260 (620)
33 PRK14959 DNA polymerase III su 99.9 3.4E-21 7.4E-26 160.9 11.7 131 1-131 123-258 (624)
34 PRK06305 DNA polymerase III su 99.9 1.1E-20 2.3E-25 154.0 12.9 132 1-132 125-261 (451)
35 PRK06647 DNA polymerase III su 99.9 9.2E-21 2E-25 157.7 12.6 133 1-133 123-260 (563)
36 PRK14962 DNA polymerase III su 99.8 1.2E-20 2.7E-25 154.2 12.7 133 1-133 121-258 (472)
37 PRK14954 DNA polymerase III su 99.8 2.4E-20 5.2E-25 156.4 13.1 133 1-133 131-273 (620)
38 PRK14953 DNA polymerase III su 99.8 2.4E-20 5.2E-25 153.0 12.6 133 1-133 123-260 (486)
39 PRK12402 replication factor C 99.8 7.1E-20 1.5E-24 142.8 14.3 133 1-133 129-266 (337)
40 PRK00440 rfc replication facto 99.8 7.8E-20 1.7E-24 141.5 14.1 133 1-133 106-242 (319)
41 TIGR02397 dnaX_nterm DNA polym 99.8 1.2E-19 2.6E-24 142.6 12.3 133 1-133 121-258 (355)
42 PRK14955 DNA polymerase III su 99.8 9E-20 2E-24 146.4 11.4 133 1-133 131-273 (397)
43 PRK14970 DNA polymerase III su 99.8 1.6E-19 3.4E-24 143.3 12.3 134 1-134 112-250 (367)
44 PRK04195 replication factor C 99.8 1.7E-19 3.7E-24 147.9 11.2 133 1-135 102-243 (482)
45 PRK14950 DNA polymerase III su 99.8 3.4E-19 7.4E-24 149.2 13.1 133 1-133 124-261 (585)
46 PRK07993 DNA polymerase III su 99.8 9.8E-20 2.1E-24 143.4 8.7 94 1-99 112-206 (334)
47 PRK09112 DNA polymerase III su 99.8 2E-19 4.3E-24 142.5 10.2 98 1-100 145-243 (351)
48 PRK08485 DNA polymerase III su 99.8 8.2E-20 1.8E-24 133.5 6.6 101 1-102 58-172 (206)
49 PRK07399 DNA polymerase III su 99.8 2.8E-19 6.1E-24 139.7 9.6 98 1-102 128-226 (314)
50 PRK08769 DNA polymerase III su 99.8 1E-18 2.2E-23 136.8 9.4 93 1-99 117-210 (319)
51 PRK06871 DNA polymerase III su 99.8 1.2E-18 2.6E-23 136.6 9.5 94 1-99 111-205 (325)
52 COG2256 MGS1 ATPase related to 99.8 2.2E-18 4.9E-23 136.5 10.2 104 1-106 108-221 (436)
53 PRK05707 DNA polymerase III su 99.8 1.8E-18 3.9E-23 135.9 9.5 95 1-99 110-205 (328)
54 PRK06090 DNA polymerase III su 99.8 1.5E-18 3.2E-23 135.8 8.8 91 1-99 112-203 (319)
55 COG0470 HolB ATPase involved i 99.8 2.6E-19 5.6E-24 138.6 4.0 93 1-104 113-206 (325)
56 TIGR00678 holB DNA polymerase 99.7 4.3E-18 9.4E-23 123.6 7.5 88 1-94 100-188 (188)
57 PRK05564 DNA polymerase III su 99.7 1.7E-17 3.7E-22 129.3 10.1 94 1-98 97-191 (313)
58 PRK07940 DNA polymerase III su 99.7 1.2E-17 2.6E-22 134.0 9.2 94 1-99 121-215 (394)
59 PHA02544 44 clamp loader, smal 99.7 6.1E-17 1.3E-21 125.8 12.8 128 1-130 104-240 (316)
60 PRK08058 DNA polymerase III su 99.7 1.8E-17 3.9E-22 130.3 8.9 93 1-100 114-207 (329)
61 PRK06964 DNA polymerase III su 99.7 2.5E-17 5.4E-22 130.0 9.2 90 1-98 136-226 (342)
62 PRK07471 DNA polymerase III su 99.7 9E-17 1.9E-21 127.9 10.1 96 1-100 145-241 (365)
63 PRK07276 DNA polymerase III su 99.7 8.2E-17 1.8E-21 124.5 8.9 91 1-99 108-199 (290)
64 PF13177 DNA_pol3_delta2: DNA 99.7 1.9E-17 4E-22 118.3 4.2 56 1-56 106-162 (162)
65 PRK05818 DNA polymerase III su 99.7 1.6E-16 3.6E-21 120.7 8.6 92 1-101 92-194 (261)
66 PRK07132 DNA polymerase III su 99.7 4.1E-16 8.9E-21 121.2 9.9 91 1-98 94-185 (299)
67 PRK05917 DNA polymerase III su 99.7 2.6E-16 5.5E-21 121.6 7.9 77 1-92 99-176 (290)
68 KOG1969 DNA replication checkp 99.6 1.8E-14 3.9E-19 121.1 13.0 131 1-131 391-553 (877)
69 PRK13342 recombination factor 99.6 1E-14 2.2E-19 117.8 10.8 108 1-110 96-209 (413)
70 PRK06581 DNA polymerase III su 99.6 5.1E-15 1.1E-19 111.4 8.3 99 1-102 93-192 (263)
71 PRK08084 DNA replication initi 99.6 1.7E-14 3.8E-19 108.5 9.8 102 1-102 101-214 (235)
72 PRK13341 recombination factor 99.6 1.5E-14 3.3E-19 123.5 10.0 101 1-103 113-223 (725)
73 PRK08727 hypothetical protein; 99.6 4.3E-14 9.3E-19 106.2 10.7 102 1-102 97-209 (233)
74 PF05496 RuvB_N: Holliday junc 99.5 1.5E-14 3.3E-19 107.8 7.4 102 1-102 105-226 (233)
75 PRK00080 ruvB Holliday junctio 99.5 1.1E-13 2.5E-18 108.5 11.0 102 1-102 106-227 (328)
76 TIGR00635 ruvB Holliday juncti 99.5 1.7E-13 3.6E-18 106.1 10.3 102 1-102 85-206 (305)
77 TIGR02902 spore_lonB ATP-depen 99.5 2.6E-13 5.6E-18 112.8 11.3 102 1-103 179-310 (531)
78 PF06068 TIP49: TIP49 C-termin 99.5 2.2E-13 4.7E-18 107.9 8.7 100 1-102 282-396 (398)
79 PRK06893 DNA replication initi 99.4 1.1E-12 2.5E-17 98.3 10.0 102 1-102 95-208 (229)
80 PRK05642 DNA replication initi 99.4 1.6E-12 3.5E-17 97.8 10.4 102 1-102 101-213 (234)
81 PRK06620 hypothetical protein; 99.4 2.9E-12 6.4E-17 95.3 11.6 99 1-102 89-194 (214)
82 PRK09087 hypothetical protein; 99.4 1.3E-12 2.8E-17 97.9 8.9 101 1-102 91-200 (226)
83 KOG2028 ATPase related to the 99.4 8E-13 1.7E-17 104.6 7.7 100 1-102 226-341 (554)
84 PRK08903 DnaA regulatory inact 99.4 4.4E-12 9.6E-17 94.4 10.4 102 1-102 94-204 (227)
85 PRK14700 recombination factor 99.4 1.4E-12 3E-17 100.8 7.6 79 25-103 6-93 (300)
86 TIGR01128 holA DNA polymerase 99.4 9.8E-12 2.1E-16 95.7 11.4 133 1-133 50-194 (302)
87 PRK08699 DNA polymerase III su 99.4 2.4E-12 5.2E-17 101.2 7.5 66 1-66 117-183 (325)
88 TIGR02881 spore_V_K stage V sp 99.3 1.2E-11 2.7E-16 94.1 10.7 103 1-103 109-236 (261)
89 COG1224 TIP49 DNA helicase TIP 99.3 6.7E-12 1.4E-16 98.9 9.2 99 1-101 295-408 (450)
90 PF00308 Bac_DnaA: Bacterial d 99.3 2.2E-11 4.7E-16 90.9 11.0 103 1-103 101-214 (219)
91 TIGR00602 rad24 checkpoint pro 99.3 1.4E-11 3E-16 104.0 11.0 105 1-105 199-331 (637)
92 COG2255 RuvB Holliday junction 99.3 2.6E-11 5.6E-16 93.1 9.9 102 1-102 107-228 (332)
93 PRK00149 dnaA chromosomal repl 99.2 1.4E-10 3E-15 94.7 12.4 102 1-102 215-327 (450)
94 TIGR03420 DnaA_homol_Hda DnaA 99.2 8.8E-11 1.9E-15 86.9 9.6 103 1-103 94-207 (226)
95 PRK12422 chromosomal replicati 99.2 9.2E-11 2E-15 95.8 10.3 102 1-102 206-318 (445)
96 TIGR00362 DnaA chromosomal rep 99.2 3.2E-10 6.9E-15 91.3 12.5 102 1-102 203-315 (405)
97 TIGR02903 spore_lon_C ATP-depe 99.2 1.9E-10 4.2E-15 97.2 11.6 101 1-102 269-399 (615)
98 PTZ00112 origin recognition co 99.2 7.8E-11 1.7E-15 101.8 9.0 104 1-104 873-988 (1164)
99 PRK14088 dnaA chromosomal repl 99.2 4.1E-10 8.9E-15 91.9 12.9 102 1-102 198-310 (440)
100 PRK14087 dnaA chromosomal repl 99.2 1.8E-10 3.9E-15 94.2 10.4 102 1-102 210-324 (450)
101 KOG2680 DNA helicase TIP49, TB 99.2 2.8E-10 6E-15 88.5 9.9 101 1-103 292-407 (454)
102 CHL00181 cbbX CbbX; Provisiona 99.2 2.9E-10 6.4E-15 88.0 10.0 103 1-103 126-252 (287)
103 KOG1942 DNA helicase, TBP-inte 99.1 4.1E-10 8.9E-15 87.3 9.2 99 1-101 300-414 (456)
104 TIGR02880 cbbX_cfxQ probable R 99.1 8.3E-10 1.8E-14 85.4 9.9 103 1-103 125-251 (284)
105 PRK07452 DNA polymerase III su 99.1 2E-09 4.3E-14 84.2 11.5 133 1-133 65-214 (326)
106 KOG1968 Replication factor C, 99.1 5.8E-10 1.3E-14 96.9 8.5 101 1-103 432-537 (871)
107 PRK14086 dnaA chromosomal repl 99.0 2E-09 4.4E-14 90.5 10.5 102 1-102 381-493 (617)
108 COG0593 DnaA ATPase involved i 99.0 8.7E-09 1.9E-13 83.1 12.1 103 1-103 179-292 (408)
109 PRK07914 hypothetical protein; 98.9 1.2E-08 2.7E-13 79.9 11.2 134 1-134 68-211 (320)
110 TIGR02928 orc1/cdc6 family rep 98.9 5.6E-09 1.2E-13 82.5 8.7 103 1-103 133-252 (365)
111 PRK05629 hypothetical protein; 98.9 2.8E-08 6.1E-13 77.8 12.1 134 1-134 68-209 (318)
112 PRK00411 cdc6 cell division co 98.9 1.6E-08 3.4E-13 80.8 10.1 102 1-102 142-259 (394)
113 PF06144 DNA_pol3_delta: DNA p 98.8 1.3E-08 2.9E-13 72.3 6.7 101 2-102 62-171 (172)
114 TIGR00763 lon ATP-dependent pr 98.8 8.4E-09 1.8E-13 89.3 6.0 99 1-99 418-548 (775)
115 PRK08487 DNA polymerase III su 98.8 1.4E-07 3.1E-12 74.1 11.5 132 2-133 76-216 (328)
116 PRK05574 holA DNA polymerase I 98.7 2.5E-07 5.3E-12 72.4 11.1 133 1-133 80-229 (340)
117 PRK06585 holA DNA polymerase I 98.6 5.5E-07 1.2E-11 70.9 11.5 124 11-134 92-227 (343)
118 PRK05907 hypothetical protein; 98.6 4E-07 8.7E-12 71.4 10.5 129 4-134 76-220 (311)
119 TIGR03015 pepcterm_ATPase puta 98.6 7.2E-07 1.6E-11 67.5 11.5 103 1-103 127-244 (269)
120 TIGR02640 gas_vesic_GvpN gas v 98.6 1.6E-06 3.5E-11 66.2 12.7 120 1-132 109-260 (262)
121 PF03215 Rad17: Rad17 cell cyc 98.6 7.4E-07 1.6E-11 74.2 11.5 103 1-103 136-269 (519)
122 TIGR03345 VI_ClpV1 type VI sec 98.6 3.1E-07 6.7E-12 80.4 9.6 103 1-103 672-828 (852)
123 PRK10787 DNA-binding ATP-depen 98.6 1.1E-07 2.3E-12 82.6 6.0 86 1-87 420-535 (784)
124 TIGR02639 ClpA ATP-dependent C 98.6 2.6E-07 5.7E-12 79.7 8.3 100 1-102 278-402 (731)
125 TIGR03345 VI_ClpV1 type VI sec 98.4 4.5E-07 9.8E-12 79.4 6.5 99 1-101 284-406 (852)
126 TIGR02974 phageshock_pspF psp 98.4 2.6E-06 5.7E-11 67.2 8.8 105 1-105 97-233 (329)
127 COG1474 CDC6 Cdc6-related prot 98.3 2.8E-06 6.1E-11 68.0 7.6 106 1-106 127-246 (366)
128 TIGR01817 nifA Nif-specific re 98.2 9.2E-06 2E-10 67.8 9.9 105 1-105 294-428 (534)
129 CHL00095 clpC Clp protease ATP 98.2 8E-06 1.7E-10 71.5 9.3 101 1-101 615-777 (821)
130 COG0466 Lon ATP-dependent Lon 98.2 1.4E-06 3.1E-11 74.1 4.5 99 1-99 421-551 (782)
131 KOG1970 Checkpoint RAD17-RFC c 98.2 1.4E-05 2.9E-10 66.6 9.8 59 44-102 256-320 (634)
132 KOG2227 Pre-initiation complex 98.2 1.6E-06 3.5E-11 70.8 4.4 100 1-100 260-374 (529)
133 PRK10865 protein disaggregatio 98.2 1.8E-05 4E-10 69.5 11.1 102 1-102 674-825 (857)
134 TIGR03346 chaperone_ClpB ATP-d 98.2 1.7E-05 3.7E-10 69.7 10.5 103 1-103 671-823 (852)
135 COG1221 PspF Transcriptional r 98.1 2.1E-05 4.6E-10 63.5 9.0 106 1-106 177-310 (403)
136 KOG2004 Mitochondrial ATP-depe 98.1 3.9E-06 8.5E-11 71.6 4.8 87 1-87 509-625 (906)
137 TIGR02639 ClpA ATP-dependent C 98.1 2.1E-05 4.6E-10 68.0 9.0 102 1-102 557-708 (731)
138 PRK15115 response regulator Gl 98.1 6.1E-05 1.3E-09 61.1 11.1 105 1-105 232-367 (444)
139 PRK11034 clpA ATP-dependent Cl 98.1 1.3E-05 2.7E-10 69.6 7.4 100 1-102 282-406 (758)
140 TIGR03346 chaperone_ClpB ATP-d 98.1 1.8E-05 3.8E-10 69.6 8.4 101 1-103 270-394 (852)
141 TIGR02915 PEP_resp_reg putativ 98.0 4.5E-05 9.7E-10 61.9 9.7 106 1-106 237-373 (445)
142 TIGR01818 ntrC nitrogen regula 98.0 5.6E-05 1.2E-09 61.6 10.1 106 1-106 232-368 (463)
143 COG1223 Predicted ATPase (AAA+ 98.0 1.4E-05 3E-10 61.6 5.9 86 1-87 214-315 (368)
144 PF01637 Arch_ATPase: Archaeal 98.0 2.8E-05 6.1E-10 56.8 7.3 94 1-95 122-232 (234)
145 CHL00176 ftsH cell division pr 98.0 6.5E-05 1.4E-09 64.2 10.3 95 1-96 279-397 (638)
146 PRK10820 DNA-binding transcrip 98.0 5.8E-05 1.3E-09 63.0 9.6 105 1-105 302-437 (520)
147 PRK10365 transcriptional regul 98.0 9.2E-05 2E-09 59.9 10.5 104 1-104 237-371 (441)
148 PRK11388 DNA-binding transcrip 98.0 9.5E-05 2.1E-09 63.0 10.8 105 1-105 420-554 (638)
149 COG1466 HolA DNA polymerase II 98.0 0.0001 2.2E-09 58.3 10.0 124 11-134 89-224 (334)
150 PRK05022 anaerobic nitric oxid 97.9 0.00016 3.5E-09 60.1 10.8 105 1-105 285-420 (509)
151 PRK11608 pspF phage shock prot 97.9 0.00018 3.8E-09 56.8 10.2 104 1-104 104-239 (326)
152 PRK11034 clpA ATP-dependent Cl 97.9 8E-05 1.7E-09 64.7 8.7 100 1-100 561-710 (758)
153 CHL00095 clpC Clp protease ATP 97.9 5.4E-05 1.2E-09 66.3 7.8 101 1-103 275-399 (821)
154 TIGR01242 26Sp45 26S proteasom 97.9 6.9E-05 1.5E-09 59.7 7.8 95 1-97 219-338 (364)
155 TIGR01241 FtsH_fam ATP-depende 97.8 0.00013 2.8E-09 60.4 9.3 95 1-96 151-269 (495)
156 PRK10865 protein disaggregatio 97.8 3.4E-05 7.4E-10 67.9 5.5 100 1-102 275-398 (857)
157 PF00004 AAA: ATPase family as 97.8 3.1E-05 6.7E-10 52.0 3.8 52 1-52 62-130 (132)
158 COG2204 AtoC Response regulato 97.8 0.0003 6.6E-09 57.9 10.1 106 1-106 239-375 (464)
159 TIGR02030 BchI-ChlI magnesium 97.7 0.00069 1.5E-08 53.8 11.6 103 1-103 135-287 (337)
160 PRK11361 acetoacetate metaboli 97.7 0.00045 9.8E-09 56.1 10.7 105 1-105 241-376 (457)
161 PRK10923 glnG nitrogen regulat 97.7 0.00034 7.5E-09 57.2 10.0 105 1-105 236-371 (469)
162 PTZ00454 26S protease regulato 97.7 0.00029 6.3E-09 57.1 9.3 101 1-102 242-363 (398)
163 PRK15424 propionate catabolism 97.7 0.00037 8.1E-09 58.5 9.8 104 1-104 326-464 (538)
164 TIGR02329 propionate_PrpR prop 97.7 0.00031 6.7E-09 58.9 9.2 104 1-104 311-449 (526)
165 PRK03992 proteasome-activating 97.7 0.0004 8.7E-09 56.0 9.4 97 1-98 228-348 (389)
166 PRK15429 formate hydrogenlyase 97.6 0.0011 2.5E-08 57.0 11.4 106 1-106 474-610 (686)
167 TIGR01243 CDC48 AAA family ATP 97.6 0.00018 3.9E-09 62.3 6.5 86 1-88 550-654 (733)
168 CHL00195 ycf46 Ycf46; Provisio 97.6 0.00021 4.5E-09 59.4 6.4 97 1-97 322-439 (489)
169 PHA02244 ATPase-like protein 97.6 0.00063 1.4E-08 54.7 8.9 58 1-58 184-264 (383)
170 cd00009 AAA The AAA+ (ATPases 97.5 0.00014 3E-09 48.7 4.4 53 1-53 88-150 (151)
171 PLN00020 ribulose bisphosphate 97.5 0.00029 6.3E-09 56.7 6.5 87 1-90 216-331 (413)
172 PTZ00361 26 proteosome regulat 97.5 0.00061 1.3E-08 55.9 8.3 94 1-96 280-398 (438)
173 PRK05342 clpX ATP-dependent pr 97.5 0.00062 1.3E-08 55.5 8.3 47 41-87 297-357 (412)
174 PRK10733 hflB ATP-dependent me 97.4 0.00082 1.8E-08 57.6 7.7 101 1-102 248-372 (644)
175 PRK13407 bchI magnesium chelat 97.3 0.0034 7.3E-08 49.9 10.5 103 1-103 132-284 (334)
176 TIGR00390 hslU ATP-dependent p 97.2 0.00052 1.1E-08 56.1 4.9 102 1-102 251-401 (441)
177 PRK05201 hslU ATP-dependent pr 97.2 0.00073 1.6E-08 55.2 5.7 102 1-102 253-403 (443)
178 TIGR03689 pup_AAA proteasome A 97.2 0.00079 1.7E-08 56.2 5.9 76 1-77 293-386 (512)
179 CHL00081 chlI Mg-protoporyphyr 97.2 0.0026 5.6E-08 50.8 8.6 103 1-103 148-300 (350)
180 KOG1514 Origin recognition com 97.2 0.0016 3.4E-08 55.9 7.5 105 1-106 512-629 (767)
181 TIGR00382 clpX endopeptidase C 97.2 0.0016 3.4E-08 53.1 7.2 48 40-87 301-363 (413)
182 COG1222 RPT1 ATP-dependent 26S 97.2 0.0022 4.7E-08 51.4 7.5 85 1-88 248-354 (406)
183 TIGR02442 Cob-chelat-sub cobal 97.0 0.0083 1.8E-07 51.4 10.2 102 1-102 130-281 (633)
184 smart00350 MCM minichromosome 96.9 0.0064 1.4E-07 50.8 8.9 67 1-67 304-399 (509)
185 TIGR02031 BchD-ChlD magnesium 96.9 0.011 2.4E-07 50.3 10.4 127 1-131 88-260 (589)
186 COG3604 FhlA Transcriptional r 96.9 0.0089 1.9E-07 49.7 9.3 105 1-105 321-456 (550)
187 TIGR00764 lon_rel lon-related 96.9 0.007 1.5E-07 51.7 8.8 101 1-101 221-367 (608)
188 PF07728 AAA_5: AAA domain (dy 96.9 0.00061 1.3E-08 46.6 1.8 47 1-47 69-139 (139)
189 TIGR01243 CDC48 AAA family ATP 96.8 0.0063 1.4E-07 52.9 7.7 89 1-91 275-381 (733)
190 TIGR01650 PD_CobS cobaltochela 96.8 0.0061 1.3E-07 48.3 6.9 134 1-136 138-321 (327)
191 PF13173 AAA_14: AAA domain 96.7 0.0022 4.7E-08 43.6 3.8 58 1-60 65-127 (128)
192 COG3829 RocR Transcriptional r 96.7 0.017 3.8E-07 48.4 9.5 103 1-103 344-477 (560)
193 PRK04841 transcriptional regul 96.6 0.025 5.3E-07 49.7 10.6 98 1-101 125-229 (903)
194 PRK13765 ATP-dependent proteas 96.6 0.012 2.5E-07 50.6 8.2 102 1-102 230-377 (637)
195 TIGR00368 Mg chelatase-related 96.6 0.005 1.1E-07 51.4 5.8 59 1-59 299-395 (499)
196 COG3284 AcoR Transcriptional a 96.5 0.018 4E-07 48.8 8.7 106 1-106 411-541 (606)
197 KOG0737 AAA+-type ATPase [Post 96.4 0.003 6.4E-08 50.6 3.1 87 1-88 190-293 (386)
198 CHL00206 ycf2 Ycf2; Provisiona 96.4 0.01 2.2E-07 56.2 6.9 88 1-88 1736-1839(2281)
199 PF07724 AAA_2: AAA domain (Cd 96.3 0.0045 9.8E-08 44.5 3.6 39 1-39 72-132 (171)
200 PRK13531 regulatory ATPase Rav 96.3 0.035 7.7E-07 46.3 9.2 102 1-102 111-261 (498)
201 PF00158 Sigma54_activat: Sigm 96.3 0.0054 1.2E-07 44.0 3.7 52 1-52 97-167 (168)
202 PRK13406 bchD magnesium chelat 96.3 0.16 3.5E-06 43.3 13.0 127 1-131 97-252 (584)
203 KOG0728 26S proteasome regulat 96.3 0.015 3.3E-07 45.0 6.2 73 1-73 244-336 (404)
204 COG0714 MoxR-like ATPases [Gen 96.2 0.017 3.6E-07 45.5 6.5 58 1-58 116-192 (329)
205 PF00931 NB-ARC: NB-ARC domain 96.2 0.014 3.1E-07 44.3 5.7 99 1-101 105-206 (287)
206 KOG0730 AAA+-type ATPase [Post 96.0 0.015 3.2E-07 49.8 5.4 100 1-102 531-649 (693)
207 COG0464 SpoVK ATPases of the A 96.0 0.026 5.6E-07 46.7 6.7 102 1-102 339-459 (494)
208 KOG0730 AAA+-type ATPase [Post 96.0 0.039 8.4E-07 47.3 7.7 90 1-91 282-386 (693)
209 PF14532 Sigma54_activ_2: Sigm 95.9 0.013 2.8E-07 40.2 4.0 54 1-54 73-137 (138)
210 COG0542 clpA ATP-binding subun 95.9 0.073 1.6E-06 46.7 9.3 102 1-102 597-751 (786)
211 COG3283 TyrR Transcriptional r 95.9 0.094 2E-06 42.5 9.1 103 1-103 297-430 (511)
212 CHL00195 ycf46 Ycf46; Provisio 95.8 0.21 4.7E-06 41.7 11.6 97 2-99 86-187 (489)
213 PTZ00111 DNA replication licen 95.8 0.028 6E-07 50.0 6.6 58 1-58 561-646 (915)
214 COG3267 ExeA Type II secretory 95.8 0.14 2.9E-06 39.5 9.5 98 1-98 135-246 (269)
215 COG0542 clpA ATP-binding subun 95.8 0.016 3.5E-07 50.6 5.0 101 1-103 266-391 (786)
216 COG1220 HslU ATP-dependent pro 95.8 0.011 2.4E-07 47.3 3.6 87 1-87 254-381 (444)
217 PRK09862 putative ATP-dependen 95.8 0.026 5.7E-07 47.2 5.9 58 1-58 298-391 (506)
218 KOG0478 DNA replication licens 95.7 0.073 1.6E-06 46.0 8.4 57 2-58 531-616 (804)
219 KOG0727 26S proteasome regulat 95.6 0.04 8.6E-07 42.8 5.9 74 1-74 252-345 (408)
220 KOG0740 AAA+-type ATPase [Post 95.4 0.026 5.7E-07 46.2 4.5 70 27-96 290-365 (428)
221 KOG0733 Nuclear AAA ATPase (VC 95.2 0.076 1.7E-06 45.6 6.9 91 1-92 286-397 (802)
222 PRK08116 hypothetical protein; 95.2 0.028 6.1E-07 43.2 4.1 57 1-57 182-251 (268)
223 PF05673 DUF815: Protein of un 95.1 0.23 5.1E-06 37.9 8.7 89 14-102 124-246 (249)
224 KOG2170 ATPase of the AAA+ sup 94.9 0.14 3E-06 40.4 7.0 38 1-38 182-226 (344)
225 PF00493 MCM: MCM2/3/5 family 94.8 0.045 9.7E-07 43.3 4.4 56 1-56 125-209 (331)
226 PF05621 TniB: Bacterial TniB 94.7 0.12 2.6E-06 40.6 6.4 102 1-103 149-267 (302)
227 KOG0742 AAA+-type ATPase [Post 94.6 0.062 1.3E-06 44.3 4.7 70 1-70 447-530 (630)
228 PF05729 NACHT: NACHT domain 94.6 0.1 2.2E-06 35.8 5.2 68 1-68 85-163 (166)
229 PF10923 DUF2791: P-loop Domai 94.5 0.51 1.1E-05 38.7 9.6 102 1-102 243-398 (416)
230 PRK06526 transposase; Provisio 94.3 0.067 1.4E-06 40.9 4.0 58 1-58 163-237 (254)
231 PF07693 KAP_NTPase: KAP famil 94.3 0.43 9.2E-06 36.9 8.6 68 1-68 176-263 (325)
232 PF14516 AAA_35: AAA-like doma 94.1 0.81 1.7E-05 36.2 9.9 98 1-103 131-245 (331)
233 KOG0733 Nuclear AAA ATPase (VC 94.0 0.13 2.9E-06 44.1 5.5 85 1-85 608-710 (802)
234 KOG0738 AAA+-type ATPase [Post 93.6 0.042 9.2E-07 44.7 1.9 100 1-100 308-430 (491)
235 PRK08181 transposase; Validate 93.4 0.17 3.6E-06 39.1 4.8 57 1-57 171-244 (269)
236 PRK12377 putative replication 93.3 0.13 2.8E-06 39.3 3.9 56 1-56 167-236 (248)
237 KOG0652 26S proteasome regulat 92.8 0.56 1.2E-05 36.7 6.8 73 1-73 268-360 (424)
238 PF07726 AAA_3: ATPase family 92.5 0.21 4.5E-06 34.6 3.8 48 1-48 66-130 (131)
239 PRK11331 5-methylcytosine-spec 92.0 0.35 7.5E-06 40.1 5.1 65 1-65 276-369 (459)
240 KOG0732 AAA+-type ATPase conta 91.9 0.94 2E-05 41.2 8.0 98 1-98 367-481 (1080)
241 COG1239 ChlI Mg-chelatase subu 91.8 0.95 2.1E-05 37.1 7.3 89 1-92 148-253 (423)
242 smart00763 AAA_PrkA PrkA AAA d 91.6 0.4 8.6E-06 38.6 5.0 85 2-86 241-348 (361)
243 PRK09183 transposase/IS protei 91.3 0.36 7.7E-06 36.9 4.3 57 1-57 168-242 (259)
244 COG2909 MalT ATP-dependent tra 91.0 0.73 1.6E-05 40.9 6.3 94 1-98 133-233 (894)
245 KOG0735 AAA+-type ATPase [Post 90.5 1 2.2E-05 39.6 6.6 99 1-99 498-618 (952)
246 COG1241 MCM2 Predicted ATPase 90.3 0.38 8.3E-06 41.8 4.0 46 2-47 388-460 (682)
247 KOG0736 Peroxisome assembly fa 90.1 0.78 1.7E-05 40.6 5.6 90 1-92 768-880 (953)
248 KOG0480 DNA replication licens 89.7 0.8 1.7E-05 39.6 5.3 57 2-58 447-532 (764)
249 smart00382 AAA ATPases associa 89.6 1.2 2.5E-05 28.8 5.2 36 1-36 82-125 (148)
250 PRK06835 DNA replication prote 89.5 0.57 1.2E-05 37.2 4.1 56 1-56 250-318 (329)
251 smart00487 DEXDc DEAD-like hel 89.3 0.22 4.8E-06 34.6 1.5 39 1-39 133-172 (201)
252 PF05872 DUF853: Bacterial pro 89.0 0.55 1.2E-05 39.0 3.8 47 1-47 259-311 (502)
253 KOG0744 AAA+-type ATPase [Post 88.6 0.81 1.8E-05 36.7 4.4 66 1-66 254-338 (423)
254 PRK06921 hypothetical protein; 88.6 0.73 1.6E-05 35.4 4.1 56 1-56 181-255 (266)
255 PF01078 Mg_chelatase: Magnesi 88.5 0.59 1.3E-05 34.8 3.4 24 1-24 110-133 (206)
256 PF07034 ORC3_N: Origin recogn 88.3 8.8 0.00019 30.3 10.1 103 1-103 203-319 (330)
257 PRK13695 putative NTPase; Prov 88.2 2 4.3E-05 30.3 5.9 63 1-66 100-170 (174)
258 COG2842 Uncharacterized ATPase 87.8 1.7 3.7E-05 34.1 5.6 96 1-103 169-277 (297)
259 PF03969 AFG1_ATPase: AFG1-lik 87.1 0.91 2E-05 36.5 3.9 57 1-57 131-203 (362)
260 KOG0739 AAA+-type ATPase [Post 86.7 0.84 1.8E-05 36.4 3.4 88 1-89 229-333 (439)
261 KOG0726 26S proteasome regulat 85.4 1.5 3.2E-05 35.0 4.1 63 1-63 282-364 (440)
262 TIGR01587 cas3_core CRISPR-ass 85.3 1 2.2E-05 35.4 3.3 39 1-39 128-167 (358)
263 COG2607 Predicted ATPase (AAA+ 84.1 12 0.00025 29.1 8.3 59 44-102 214-278 (287)
264 PLN03210 Resistant to P. syrin 84.0 5.4 0.00012 36.7 7.8 89 1-92 300-390 (1153)
265 COG1067 LonB Predicted ATP-dep 84.0 6.4 0.00014 34.2 7.7 103 1-103 229-377 (647)
266 KOG0734 AAA+-type ATPase conta 84.0 1.7 3.7E-05 37.2 4.2 94 1-96 400-515 (752)
267 COG1373 Predicted ATPase (AAA+ 83.8 4.4 9.5E-05 32.9 6.5 59 1-62 98-161 (398)
268 COG5271 MDN1 AAA ATPase contai 83.4 3.5 7.6E-05 40.5 6.1 91 1-96 959-1071(4600)
269 PF05707 Zot: Zonular occluden 83.3 0.65 1.4E-05 33.6 1.4 55 1-55 83-146 (193)
270 KOG0731 AAA+-type ATPase conta 82.8 6.6 0.00014 34.8 7.4 90 1-90 407-517 (774)
271 COG1485 Predicted ATPase [Gene 82.6 2.1 4.6E-05 34.5 4.1 57 1-57 134-206 (367)
272 PRK07952 DNA replication prote 82.3 1.8 3.8E-05 33.0 3.4 56 1-56 166-235 (244)
273 PF07652 Flavi_DEAD: Flaviviru 81.9 1.8 3.9E-05 30.6 3.1 38 1-39 99-138 (148)
274 KOG0729 26S proteasome regulat 80.1 3 6.5E-05 32.9 4.0 44 1-44 274-334 (435)
275 PF02463 SMC_N: RecF/RecN/SMC 79.7 2.9 6.2E-05 30.5 3.8 37 1-37 162-199 (220)
276 TIGR02746 TraC-F-type type-IV 79.5 2 4.3E-05 37.7 3.3 84 1-88 641-735 (797)
277 KOG0745 Putative ATP-dependent 79.4 1 2.2E-05 37.5 1.3 63 41-103 427-506 (564)
278 COG1219 ClpX ATP-dependent pro 78.9 0.72 1.6E-05 36.9 0.3 56 41-96 286-361 (408)
279 cd00268 DEADc DEAD-box helicas 78.6 1.6 3.6E-05 31.2 2.1 39 1-39 147-186 (203)
280 KOG0651 26S proteasome regulat 78.2 3 6.5E-05 33.4 3.5 88 1-89 229-339 (388)
281 KOG0479 DNA replication licens 78.1 2.9 6.3E-05 36.2 3.6 48 1-48 402-476 (818)
282 PF12846 AAA_10: AAA-like doma 77.8 3.4 7.3E-05 31.0 3.7 62 1-62 224-294 (304)
283 KOG0330 ATP-dependent RNA heli 77.5 4.6 0.0001 33.2 4.5 40 1-40 208-249 (476)
284 PRK10536 hypothetical protein; 77.4 2.6 5.6E-05 32.5 2.9 33 1-36 180-212 (262)
285 KOG0481 DNA replication licens 76.9 1.8 4E-05 36.8 2.1 53 1-53 432-512 (729)
286 PRK04296 thymidine kinase; Pro 76.7 4.2 9.1E-05 29.4 3.8 34 1-36 82-115 (190)
287 PF12774 AAA_6: Hydrolytic ATP 76.3 30 0.00065 26.0 9.3 70 2-74 89-183 (231)
288 KOG0477 DNA replication licens 75.9 1.7 3.6E-05 37.8 1.6 63 2-64 551-645 (854)
289 PF03474 DMA: DMRTA motif; In 75.4 5.8 0.00013 21.6 3.2 22 76-97 16-37 (39)
290 PHA00729 NTP-binding motif con 74.1 3.3 7.1E-05 31.3 2.7 27 40-66 111-138 (226)
291 PTZ00424 helicase 45; Provisio 73.5 2.5 5.4E-05 33.7 2.1 38 1-38 174-212 (401)
292 PF13604 AAA_30: AAA domain; P 73.2 3.6 7.9E-05 29.9 2.7 35 1-37 97-131 (196)
293 PF02562 PhoH: PhoH-like prote 73.0 2.1 4.4E-05 31.8 1.4 34 1-37 123-156 (205)
294 PF03266 NTPase_1: NTPase; In 72.7 5.4 0.00012 28.4 3.5 59 1-62 99-165 (168)
295 KOG0736 Peroxisome assembly fa 72.5 26 0.00056 31.5 8.0 46 28-73 534-581 (953)
296 TIGR02562 cas3_yersinia CRISPR 72.3 4.2 9E-05 37.3 3.3 38 1-38 597-636 (1110)
297 PHA02774 E1; Provisional 71.7 5.1 0.00011 34.5 3.6 72 2-73 484-586 (613)
298 COG4098 comFA Superfamily II D 71.6 4.2 9.1E-05 33.0 2.9 38 1-40 206-247 (441)
299 KOG2228 Origin recognition com 71.3 14 0.00029 30.1 5.6 68 1-68 141-219 (408)
300 PF01695 IstB_IS21: IstB-like 70.6 3 6.5E-05 30.0 1.8 37 1-37 112-150 (178)
301 PF02845 CUE: CUE domain; Int 70.1 11 0.00024 20.2 3.7 27 74-100 14-40 (42)
302 KOG0741 AAA+-type ATPase [Post 69.4 22 0.00049 30.7 6.8 99 1-104 602-722 (744)
303 KOG0482 DNA replication licens 69.4 2.7 5.8E-05 35.8 1.4 24 2-25 444-467 (721)
304 KOG1051 Chaperone HSP104 and r 68.8 5.1 0.00011 36.1 3.1 36 1-36 664-710 (898)
305 PF00072 Response_reg: Respons 68.5 19 0.0004 22.5 5.1 52 13-65 58-112 (112)
306 COG0465 HflB ATP-dependent Zn 67.9 13 0.00027 32.1 5.1 94 1-96 246-364 (596)
307 COG1875 NYN ribonuclease and A 67.8 5.3 0.00011 32.7 2.7 32 1-35 355-386 (436)
308 PF12775 AAA_7: P-loop contain 67.4 17 0.00037 27.9 5.4 69 1-69 104-194 (272)
309 smart00546 CUE Domain that may 66.0 16 0.00034 19.7 3.7 25 74-98 15-39 (43)
310 PHA00350 putative assembly pro 65.9 2.7 5.8E-05 34.4 0.7 48 1-48 85-157 (399)
311 PRK09694 helicase Cas3; Provis 65.4 5.4 0.00012 35.9 2.6 44 1-44 443-489 (878)
312 PRK11634 ATP-dependent RNA hel 65.2 5.3 0.00011 34.5 2.5 37 1-37 153-190 (629)
313 COG0497 RecN ATPase involved i 65.1 26 0.00057 30.0 6.4 79 1-81 457-546 (557)
314 KOG0743 AAA+-type ATPase [Post 65.1 51 0.0011 27.6 7.9 83 15-98 322-427 (457)
315 COG1203 CRISPR-associated heli 65.0 3.8 8.2E-05 36.0 1.6 48 1-48 342-393 (733)
316 KOG0342 ATP-dependent RNA heli 63.6 5 0.00011 33.7 1.9 64 1-64 234-304 (543)
317 PHA03368 DNA packaging termina 63.2 9.4 0.0002 33.5 3.5 35 1-37 356-390 (738)
318 PF02969 TAF: TATA box binding 62.5 11 0.00024 22.8 2.9 38 62-99 7-45 (66)
319 PTZ00110 helicase; Provisional 62.5 5.8 0.00013 33.5 2.2 36 1-36 281-317 (545)
320 PRK10590 ATP-dependent RNA hel 62.4 5.5 0.00012 32.7 2.0 37 1-37 153-191 (456)
321 PRK14981 DNA-directed RNA poly 61.6 45 0.00098 22.2 7.5 49 51-101 43-91 (112)
322 cd00267 ABC_ATPase ABC (ATP-bi 61.4 10 0.00023 26.0 3.0 47 1-47 102-150 (157)
323 KOG4284 DEAD box protein [Tran 61.2 6.3 0.00014 34.6 2.1 40 1-40 171-213 (980)
324 PRK13898 type IV secretion sys 61.1 32 0.0007 30.5 6.6 81 1-89 646-736 (800)
325 PF00176 SNF2_N: SNF2 family N 60.6 2.1 4.6E-05 32.2 -0.7 55 1-56 138-193 (299)
326 cd03214 ABC_Iron-Siderophores_ 60.3 12 0.00026 26.4 3.3 51 1-51 119-172 (180)
327 TIGR03411 urea_trans_UrtD urea 59.1 13 0.00029 27.4 3.4 50 1-50 165-215 (242)
328 cd03263 ABC_subfamily_A The AB 58.4 15 0.00032 26.7 3.5 50 1-50 155-205 (220)
329 TIGR01389 recQ ATP-dependent D 57.6 13 0.00028 31.6 3.5 45 1-45 131-182 (591)
330 TIGR00929 VirB4_CagE type IV s 57.5 37 0.00079 29.7 6.3 79 1-85 633-720 (785)
331 TIGR00614 recQ_fam ATP-depende 57.0 13 0.00028 30.7 3.3 39 1-40 131-176 (470)
332 PHA02562 46 endonuclease subun 56.2 24 0.00053 29.5 4.9 48 1-50 500-549 (562)
333 KOG2543 Origin recognition com 56.1 89 0.0019 25.9 7.7 117 1-117 119-247 (438)
334 PHA01513 mnt Mnt 55.9 21 0.00045 22.7 3.3 30 58-87 14-43 (82)
335 PHA03333 putative ATPase subun 55.6 17 0.00037 32.1 3.8 35 1-37 298-332 (752)
336 PLN03142 Probable chromatin-re 55.5 15 0.00033 33.7 3.7 38 1-39 295-332 (1033)
337 PRK14251 phosphate ABC transpo 55.2 16 0.00036 27.1 3.4 51 1-51 169-220 (251)
338 PRK14253 phosphate ABC transpo 55.1 17 0.00036 27.0 3.4 50 1-50 167-217 (249)
339 KOG0385 Chromatin remodeling c 55.0 11 0.00024 33.6 2.7 38 1-39 293-330 (971)
340 PHA02558 uvsW UvsW helicase; P 54.8 10 0.00023 31.6 2.4 34 1-37 226-260 (501)
341 cd00561 CobA_CobO_BtuR ATP:cor 54.6 10 0.00022 27.0 2.0 48 1-48 99-153 (159)
342 PRK14241 phosphate transporter 54.3 18 0.00039 27.1 3.5 50 1-50 170-220 (258)
343 PRK06369 nac nascent polypepti 54.2 61 0.0013 21.9 5.6 40 54-99 74-113 (115)
344 PF12781 AAA_9: ATP-binding dy 53.8 43 0.00093 25.1 5.4 52 25-76 119-172 (228)
345 cd03239 ABC_SMC_head The struc 53.8 21 0.00046 25.4 3.7 51 1-52 120-172 (178)
346 cd03262 ABC_HisP_GlnQ_permease 53.8 17 0.00038 26.1 3.2 50 1-50 157-208 (213)
347 cd03278 ABC_SMC_barmotin Barmo 53.5 24 0.00052 25.6 3.9 38 1-38 139-177 (197)
348 cd03274 ABC_SMC4_euk Eukaryoti 52.4 30 0.00066 25.4 4.4 52 1-53 153-205 (212)
349 cd03264 ABC_drug_resistance_li 52.4 21 0.00045 25.7 3.5 50 1-50 152-202 (211)
350 PRK14261 phosphate ABC transpo 52.2 19 0.00042 26.8 3.3 50 1-50 171-221 (253)
351 PF03869 Arc: Arc-like DNA bin 52.2 19 0.00041 20.4 2.6 29 58-86 13-41 (50)
352 COG3593 Predicted ATP-dependen 52.1 26 0.00057 30.2 4.4 46 2-47 306-354 (581)
353 KOG0343 RNA Helicase [RNA proc 51.8 9.8 0.00021 32.8 1.8 40 1-40 219-260 (758)
354 cd08045 TAF4 TATA Binding Prot 51.8 48 0.001 24.4 5.3 51 55-105 45-96 (212)
355 PRK14262 phosphate ABC transpo 51.7 22 0.00048 26.4 3.6 50 1-50 168-218 (250)
356 TIGR00264 alpha-NAC-related pr 51.5 67 0.0015 21.7 5.5 39 55-99 77-115 (116)
357 PF15610 PRTase_3: PRTase ComF 51.5 26 0.00057 27.2 3.9 84 1-91 142-228 (274)
358 PRK14274 phosphate ABC transpo 51.3 22 0.00048 26.6 3.6 50 1-50 177-227 (259)
359 COG1618 Predicted nucleotide k 51.0 63 0.0014 23.5 5.6 61 1-64 104-171 (179)
360 PRK14260 phosphate ABC transpo 50.9 23 0.00051 26.5 3.6 51 1-51 172-223 (259)
361 PRK15177 Vi polysaccharide exp 50.6 22 0.00047 26.0 3.3 47 1-47 126-173 (213)
362 PF00627 UBA: UBA/TS-N domain; 50.5 36 0.00077 17.6 4.8 25 72-98 13-37 (37)
363 cd03279 ABC_sbcCD SbcCD and ot 50.5 28 0.0006 25.4 3.9 49 1-49 155-205 (213)
364 TIGR03005 ectoine_ehuA ectoine 50.4 19 0.00042 26.8 3.1 50 1-50 168-220 (252)
365 PF12767 SAGA-Tad1: Transcript 50.2 41 0.0009 25.5 4.9 44 52-95 200-244 (252)
366 PF09848 DUF2075: Uncharacteri 50.1 11 0.00023 29.9 1.7 98 1-102 87-214 (352)
367 KOG0338 ATP-dependent RNA heli 49.7 6.6 0.00014 33.5 0.5 47 1-47 331-379 (691)
368 PRK13539 cytochrome c biogenes 49.2 31 0.00068 24.9 4.0 52 1-56 149-202 (207)
369 PF05272 VirE: Virulence-assoc 49.1 18 0.0004 26.5 2.7 54 1-54 99-169 (198)
370 TIGR00972 3a0107s01c2 phosphat 49.1 22 0.00047 26.4 3.2 50 1-50 166-216 (247)
371 cd03228 ABCC_MRP_Like The MRP 49.0 30 0.00066 24.1 3.8 40 1-40 118-158 (171)
372 COG1196 Smc Chromosome segrega 49.0 21 0.00046 33.1 3.6 38 1-38 1092-1130(1163)
373 PRK10253 iron-enterobactin tra 49.0 21 0.00046 26.9 3.2 50 1-50 165-217 (265)
374 PRK14245 phosphate ABC transpo 48.9 24 0.00053 26.2 3.4 51 1-51 168-219 (250)
375 cd03231 ABC_CcmA_heme_exporter 48.9 31 0.00066 24.8 3.9 52 1-52 147-200 (201)
376 PRK14729 miaA tRNA delta(2)-is 48.7 1.2E+02 0.0026 23.8 7.3 54 54-110 116-177 (300)
377 PRK11776 ATP-dependent RNA hel 48.7 9.8 0.00021 31.1 1.3 37 1-37 151-189 (460)
378 TIGR03522 GldA_ABC_ATP gliding 48.6 26 0.00057 27.0 3.7 50 1-50 155-205 (301)
379 cd03273 ABC_SMC2_euk Eukaryoti 48.5 41 0.0009 25.1 4.6 52 1-53 192-244 (251)
380 PHA03372 DNA packaging termina 48.5 22 0.00048 31.0 3.4 35 1-37 303-337 (668)
381 cd03272 ABC_SMC3_euk Eukaryoti 48.4 37 0.0008 25.0 4.3 53 1-54 184-237 (243)
382 PRK14256 phosphate ABC transpo 48.1 23 0.00049 26.4 3.1 50 1-50 170-220 (252)
383 PLN00206 DEAD-box ATP-dependen 48.0 13 0.00029 31.1 2.0 37 1-37 274-311 (518)
384 PRK14267 phosphate ABC transpo 48.0 25 0.00053 26.2 3.3 50 1-50 171-221 (253)
385 cd03221 ABCF_EF-3 ABCF_EF-3 E 47.9 29 0.00063 23.6 3.5 48 1-50 92-140 (144)
386 PRK01172 ski2-like helicase; P 47.7 24 0.00052 30.5 3.6 37 1-37 139-179 (674)
387 cd03216 ABC_Carb_Monos_I This 47.4 30 0.00064 24.1 3.5 50 1-50 104-155 (163)
388 PRK14272 phosphate ABC transpo 47.4 28 0.00062 25.8 3.6 50 1-50 170-220 (252)
389 PRK07414 cob(I)yrinic acid a,c 47.3 13 0.00029 27.0 1.7 39 1-39 119-160 (178)
390 cd03258 ABC_MetN_methionine_tr 47.2 21 0.00045 26.2 2.8 50 1-50 162-214 (233)
391 PRK14249 phosphate ABC transpo 46.7 28 0.0006 25.9 3.4 50 1-50 169-219 (251)
392 cd01120 RecA-like_NTPases RecA 46.7 21 0.00046 23.7 2.6 39 1-39 89-139 (165)
393 PRK11057 ATP-dependent DNA hel 46.6 23 0.00051 30.3 3.3 39 1-40 143-188 (607)
394 TIGR00603 rad25 DNA repair hel 46.6 21 0.00046 31.6 3.1 34 1-37 379-412 (732)
395 PRK14247 phosphate ABC transpo 46.6 32 0.00069 25.5 3.8 51 1-51 168-219 (250)
396 cd03235 ABC_Metallic_Cations A 46.6 27 0.0006 25.1 3.3 50 1-50 154-205 (213)
397 PRK14275 phosphate ABC transpo 46.5 28 0.00061 26.7 3.5 50 1-50 204-254 (286)
398 cd03298 ABC_ThiQ_thiamine_tran 46.3 24 0.00053 25.4 3.0 50 1-50 150-202 (211)
399 PRK05986 cob(I)alamin adenolsy 46.0 14 0.00031 27.1 1.7 49 1-49 119-174 (191)
400 PRK14244 phosphate ABC transpo 46.0 31 0.00066 25.7 3.6 50 1-50 171-221 (251)
401 smart00489 DEXDc3 DEAD-like he 45.8 9.2 0.0002 29.6 0.7 18 1-18 240-257 (289)
402 smart00488 DEXDc2 DEAD-like he 45.8 9.2 0.0002 29.6 0.7 18 1-18 240-257 (289)
403 PRK13652 cbiO cobalt transport 45.7 26 0.00057 26.6 3.2 50 1-50 159-211 (277)
404 cd03213 ABCG_EPDR ABCG transpo 45.5 40 0.00086 24.1 4.0 50 1-50 133-185 (194)
405 cd03225 ABC_cobalt_CbiO_domain 45.4 25 0.00055 25.3 3.0 49 1-49 156-206 (211)
406 PRK10771 thiQ thiamine transpo 45.1 27 0.00059 25.6 3.2 50 1-50 151-203 (232)
407 PRK14270 phosphate ABC transpo 45.1 27 0.00058 26.0 3.1 50 1-50 169-219 (251)
408 TIGR03817 DECH_helic helicase/ 44.9 24 0.00053 31.1 3.2 38 1-38 161-205 (742)
409 PF10236 DAP3: Mitochondrial r 44.9 67 0.0015 25.1 5.4 48 49-96 258-308 (309)
410 TIGR00708 cobA cob(I)alamin ad 44.9 15 0.00032 26.6 1.6 49 1-49 101-156 (173)
411 cd03300 ABC_PotA_N PotA is an 44.7 25 0.00054 25.9 2.9 50 1-50 152-204 (232)
412 PRK14243 phosphate transporter 44.6 32 0.0007 25.9 3.6 51 1-51 173-224 (264)
413 KOG0328 Predicted ATP-dependen 44.6 21 0.00045 28.4 2.5 38 1-38 173-211 (400)
414 TIGR01448 recD_rel helicase, p 44.5 22 0.00048 31.3 2.9 34 1-37 420-453 (720)
415 TIGR01277 thiQ thiamine ABC tr 44.5 27 0.00058 25.3 3.0 50 1-50 150-202 (213)
416 cd03218 ABC_YhbG The ABC trans 44.5 29 0.00063 25.3 3.2 50 1-50 155-206 (232)
417 PRK14265 phosphate ABC transpo 44.4 34 0.00073 26.0 3.6 51 1-51 183-234 (274)
418 PRK14255 phosphate ABC transpo 44.0 32 0.00069 25.6 3.4 50 1-50 170-220 (252)
419 PRK14263 phosphate ABC transpo 43.9 35 0.00075 25.8 3.6 51 1-51 171-222 (261)
420 COG3914 Spy Predicted O-linked 43.9 69 0.0015 27.8 5.6 48 27-74 429-487 (620)
421 PF11116 DUF2624: Protein of u 43.8 46 0.001 21.3 3.6 35 52-90 12-46 (85)
422 cd03251 ABCC_MsbA MsbA is an e 43.7 40 0.00086 24.6 3.9 49 1-50 160-209 (234)
423 PRK13634 cbiO cobalt transport 43.5 26 0.00057 26.9 3.0 51 1-51 167-220 (290)
424 PRK14273 phosphate ABC transpo 43.3 35 0.00076 25.4 3.5 50 1-50 172-222 (254)
425 PRK14269 phosphate ABC transpo 43.3 37 0.0008 25.2 3.7 50 1-50 164-214 (246)
426 TIGR01714 phage_rep_org_N phag 43.1 18 0.00039 24.6 1.7 48 72-121 49-97 (119)
427 cd03226 ABC_cobalt_CbiO_domain 43.1 36 0.00078 24.4 3.5 49 1-49 148-198 (205)
428 cd03260 ABC_PstB_phosphate_tra 43.0 34 0.00073 24.9 3.4 48 1-48 163-211 (227)
429 TIGR02673 FtsE cell division A 43.0 28 0.00061 25.1 2.9 49 1-49 159-209 (214)
430 PF06648 DUF1160: Protein of u 42.9 78 0.0017 21.6 4.8 66 42-112 38-103 (122)
431 TIGR02770 nickel_nikD nickel i 42.8 28 0.0006 25.6 2.9 50 1-50 147-199 (230)
432 PRK10419 nikE nickel transport 42.8 26 0.00057 26.5 2.8 50 1-50 173-225 (268)
433 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 42.7 31 0.00067 25.3 3.1 50 1-50 164-215 (224)
434 PRK10744 pstB phosphate transp 42.7 35 0.00075 25.6 3.5 50 1-50 178-228 (260)
435 KOG0347 RNA helicase [RNA proc 42.5 16 0.00035 31.5 1.7 40 1-40 344-390 (731)
436 PRK14240 phosphate transporter 42.3 37 0.00081 25.2 3.5 50 1-50 168-218 (250)
437 PRK09493 glnQ glutamine ABC tr 42.2 33 0.00072 25.3 3.3 50 1-50 158-209 (240)
438 cd03219 ABC_Mj1267_LivG_branch 42.0 37 0.00081 24.8 3.5 50 1-50 165-216 (236)
439 PRK13766 Hef nuclease; Provisi 42.0 61 0.0013 28.5 5.3 13 1-13 135-147 (773)
440 PRK14237 phosphate transporter 42.0 38 0.00081 25.6 3.6 50 1-50 185-235 (267)
441 PRK14239 phosphate transporter 41.9 37 0.00081 25.2 3.5 50 1-50 170-220 (252)
442 PRK14268 phosphate ABC transpo 41.8 35 0.00076 25.5 3.4 50 1-50 176-226 (258)
443 TIGR02315 ABC_phnC phosphonate 41.7 36 0.00077 25.1 3.3 50 1-50 167-219 (243)
444 PRK11192 ATP-dependent RNA hel 41.6 15 0.00032 29.8 1.3 36 1-36 151-188 (434)
445 cd03257 ABC_NikE_OppD_transpor 41.4 32 0.00069 25.0 3.0 50 1-50 167-219 (228)
446 PRK09984 phosphonate/organopho 41.4 32 0.00069 25.8 3.1 50 1-50 174-226 (262)
447 PHA02653 RNA helicase NPH-II; 41.3 18 0.00039 31.7 1.8 37 1-38 295-333 (675)
448 PRK14252 phosphate ABC transpo 41.3 35 0.00076 25.6 3.3 50 1-50 183-233 (265)
449 cd03241 ABC_RecN RecN ATPase i 41.2 44 0.00095 25.5 3.8 38 1-38 196-234 (276)
450 cd03266 ABC_NatA_sodium_export 41.1 36 0.00077 24.6 3.2 49 1-49 158-208 (218)
451 PRK14259 phosphate ABC transpo 41.1 41 0.00089 25.5 3.6 51 1-51 176-227 (269)
452 cd04411 Ribosomal_P1_P2_L12p R 41.0 1E+02 0.0023 20.3 5.5 43 54-100 16-59 (105)
453 KOG0735 AAA+-type ATPase [Post 40.9 1.5E+02 0.0033 26.8 7.3 100 1-101 764-884 (952)
454 PRK11124 artP arginine transpo 40.9 34 0.00073 25.2 3.1 49 1-49 163-213 (242)
455 PRK00254 ski2-like helicase; P 40.8 29 0.00063 30.4 3.1 37 1-37 142-179 (720)
456 PRK13546 teichoic acids export 40.8 34 0.00073 26.0 3.1 50 1-50 165-216 (264)
457 TIGR00968 3a0106s01 sulfate AB 40.6 33 0.00071 25.3 3.0 50 1-50 152-204 (237)
458 COG3899 Predicted ATPase [Gene 40.5 1.6E+02 0.0034 26.7 7.6 103 1-104 158-267 (849)
459 PF00270 DEAD: DEAD/DEAH box h 40.5 9.4 0.0002 26.0 0.0 24 1-24 123-147 (169)
460 TIGR00643 recG ATP-dependent D 40.3 25 0.00055 30.3 2.6 36 1-36 361-396 (630)
461 PRK14242 phosphate transporter 40.2 40 0.00086 25.0 3.4 50 1-50 171-221 (253)
462 cd03230 ABC_DR_subfamily_A Thi 40.1 36 0.00078 23.8 3.0 50 1-50 117-168 (173)
463 PRK04147 N-acetylneuraminate l 40.1 1.7E+02 0.0037 22.5 9.5 94 5-98 50-177 (293)
464 PRK14271 phosphate ABC transpo 40.0 40 0.00086 25.7 3.4 50 1-50 185-235 (276)
465 PF02572 CobA_CobO_BtuR: ATP:c 40.0 12 0.00026 27.0 0.5 49 1-49 100-155 (172)
466 PRK14236 phosphate transporter 39.7 40 0.00087 25.5 3.4 50 1-50 190-240 (272)
467 PRK10869 recombination and rep 39.5 43 0.00093 28.6 3.8 37 1-37 456-493 (553)
468 PF12696 TraG-D_C: TraM recogn 39.5 64 0.0014 21.4 4.1 67 1-69 4-80 (128)
469 PF03028 Dynein_heavy: Dynein 39.5 26 0.00056 30.6 2.6 55 2-57 175-234 (707)
470 TIGR03410 urea_trans_UrtE urea 39.4 36 0.00078 24.8 3.0 50 1-50 153-205 (230)
471 smart00165 UBA Ubiquitin assoc 39.3 55 0.0012 16.6 4.2 25 74-98 12-36 (37)
472 PRK14266 phosphate ABC transpo 39.2 45 0.00099 24.7 3.6 48 1-48 168-216 (250)
473 cd03292 ABC_FtsE_transporter F 39.1 45 0.00098 23.9 3.5 49 1-49 158-208 (214)
474 TIGR01547 phage_term_2 phage t 39.0 36 0.00079 27.2 3.2 38 1-38 105-142 (396)
475 TIGR03740 galliderm_ABC gallid 39.0 39 0.00084 24.6 3.1 48 1-48 146-195 (223)
476 PRK02362 ski2-like helicase; P 38.7 45 0.00097 29.3 3.9 37 1-37 141-181 (737)
477 PRK11231 fecE iron-dicitrate t 38.6 41 0.0009 25.1 3.3 50 1-50 160-211 (255)
478 COG1119 ModF ABC-type molybden 38.2 62 0.0014 25.0 4.1 50 1-50 193-246 (257)
479 PF06207 DUF1002: Protein of u 38.2 79 0.0017 23.9 4.7 34 53-86 170-203 (225)
480 cd03247 ABCC_cytochrome_bd The 38.1 60 0.0013 22.7 3.9 48 1-49 120-168 (178)
481 PRK14248 phosphate ABC transpo 38.0 42 0.0009 25.3 3.3 50 1-50 186-236 (268)
482 cd03268 ABC_BcrA_bacitracin_re 37.9 40 0.00087 24.2 3.0 50 1-50 148-199 (208)
483 cd03301 ABC_MalK_N The N-termi 37.9 37 0.0008 24.4 2.9 48 1-48 152-202 (213)
484 PF00580 UvrD-helicase: UvrD/R 37.9 28 0.00061 26.1 2.3 37 1-40 260-296 (315)
485 cd03269 ABC_putative_ATPase Th 37.6 50 0.0011 23.7 3.5 50 1-50 150-201 (210)
486 PF14555 UBA_4: UBA-like domai 37.5 69 0.0015 17.2 4.9 23 76-98 14-36 (43)
487 KOG0331 ATP-dependent RNA heli 37.4 38 0.00083 28.8 3.2 39 1-39 243-284 (519)
488 PRK11264 putative amino-acid A 37.4 43 0.00094 24.8 3.2 51 1-51 166-218 (250)
489 PRK04537 ATP-dependent RNA hel 37.3 27 0.00059 29.8 2.3 36 1-36 163-202 (572)
490 TIGR03744 traC_PFL_4706 conjug 37.3 90 0.0019 28.3 5.6 81 1-87 737-824 (893)
491 cd03276 ABC_SMC6_euk Eukaryoti 37.2 80 0.0017 22.8 4.5 54 1-55 135-193 (198)
492 cd03299 ABC_ModC_like Archeal 37.1 40 0.00086 24.9 3.0 50 1-50 151-203 (235)
493 TIGR02168 SMC_prok_B chromosom 37.1 45 0.00098 30.2 3.8 52 1-53 1115-1167(1179)
494 cd07985 LPLAT_GPAT Lysophospho 37.1 85 0.0018 23.9 4.7 33 16-48 10-43 (235)
495 KOG0350 DEAD-box ATP-dependent 36.9 16 0.00035 31.1 0.9 25 1-25 299-323 (620)
496 PRK13538 cytochrome c biogenes 36.9 57 0.0012 23.4 3.7 40 1-40 151-192 (204)
497 cd03229 ABC_Class3 This class 36.6 40 0.00087 23.7 2.8 48 1-48 122-172 (178)
498 TIGR03873 F420-0_ABC_ATP propo 36.5 48 0.001 24.7 3.4 50 1-50 159-210 (256)
499 TIGR01184 ntrCD nitrate transp 36.5 42 0.00092 24.6 3.0 50 1-50 136-188 (230)
500 TIGR02323 CP_lyasePhnK phospho 36.5 42 0.0009 24.9 3.0 50 1-50 170-222 (253)
No 1
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.97 E-value=2.1e-31 Score=201.90 Aligned_cols=137 Identities=39% Similarity=0.668 Sum_probs=132.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|.|+|.|+.+||++|+++||+++.++++|++||+.+++ +||||||..++.+.|+++++...|..++++||+.++.+.
T Consensus 131 vvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 131 VVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL 210 (351)
T ss_pred EEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH
Confidence 5789999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccC-ccc-cCCcHHHHHHHHHHHHhcCCCCC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEG-QVI-LTGWEDDITNIATKIIEEQSPKQ 137 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~-~~~-~~~~~~~~~~i~~~i~~~~~~~~ 137 (137)
+..|++.|+||+|.|+-+|+.+...+.+++.+ +++ .+||+.++.+++..|+++|||.+
T Consensus 211 l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~ 270 (351)
T KOG2035|consen 211 LKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAK 270 (351)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHH
Confidence 99999999999999999999999999999888 666 69999999999999999999963
No 2
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.97 E-value=2.3e-30 Score=198.35 Aligned_cols=135 Identities=24% Similarity=0.443 Sum_probs=123.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
|||||+|.|+.++|++|+++||.++.+++|||+||+..+| ++|.|||+-|+|+++.++++..+|+.||.+||+++++++
T Consensus 133 iIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~a 212 (346)
T KOG0989|consen 133 IILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDA 212 (346)
T ss_pred EEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 6899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc--cCC--cHHHHHHHHHHHHhcCCC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI--LTG--WEDDITNIATKIIEEQSP 135 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~~~i~~~~~~ 135 (137)
+..|++.|+||+|+|+.+||+++..+.+|+.+.+. .-| -.+.+.++.+..++.+.|
T Consensus 213 l~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~ 272 (346)
T KOG0989|consen 213 LKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTP 272 (346)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChH
Confidence 99999999999999999999999988888866654 222 355667777877777655
No 3
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.96 E-value=1.9e-29 Score=187.93 Aligned_cols=131 Identities=21% Similarity=0.365 Sum_probs=120.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
||+||+|+|+.++|++|+++||-++..|+|.|+||...|| .||.|||.+++|.+++++++.++|.++++.|++.++++.
T Consensus 117 iILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dg 196 (333)
T KOG0991|consen 117 IILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDG 196 (333)
T ss_pred EEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcch
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCc-ccCccc-cCC--cHHHHHHHHHHHHhc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPF-VEGQVI-LTG--WEDDITNIATKIIEE 132 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~-~~~~~~-~~~--~~~~~~~i~~~i~~~ 132 (137)
++.++..+.||||+++|.||+.. .+.++ +.+.|+ ..| ++..++.+++.++..
T Consensus 197 Leaiifta~GDMRQalNnLQst~-~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~ 252 (333)
T KOG0991|consen 197 LEAIIFTAQGDMRQALNNLQSTV-NGFGLVNQENVFKVCDEPHPLLVKKMLQACLKR 252 (333)
T ss_pred HHHhhhhccchHHHHHHHHHHHh-ccccccchhhhhhccCCCChHHHHHHHHHHHhc
Confidence 99999999999999999999998 56664 445555 444 899999998888764
No 4
>PRK04132 replication factor C small subunit; Provisional
Probab=99.94 E-value=9.3e-27 Score=199.34 Aligned_cols=132 Identities=27% Similarity=0.469 Sum_probs=119.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|+|+.++|++|+++||+|+++++|||+||++.++ +||+|||+.++|++++.+++..+|.++|++||+++++++
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~ 713 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEG 713 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCcccc---CCcHHHHHHHHHHHHhc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVIL---TGWEDDITNIATKIIEE 132 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~i~~~ 132 (137)
+..++..++||+|.|+|+||.+...+..++.+.+.. ...+..+.++++.++.+
T Consensus 714 L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~ 769 (846)
T PRK04132 714 LQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKG 769 (846)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999886666777777652 23456777777766644
No 5
>PLN03025 replication factor C subunit; Provisional
Probab=99.94 E-value=5.6e-26 Score=177.50 Aligned_cols=133 Identities=24% Similarity=0.336 Sum_probs=118.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+..+|++|++++|+++.+++||++||..+++ ++|+|||..++|++++++++..+|..++++||+.+++++
T Consensus 103 iiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~ 182 (319)
T PLN03025 103 VILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEG 182 (319)
T ss_pred EEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc---cCCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI---LTGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~~ 133 (137)
+.++++.++||+|.++|.||........++.+.+. ....+..+..+++.+..++
T Consensus 183 l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~~~ 239 (319)
T PLN03025 183 LEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGK 239 (319)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999876544456655554 2336778888888776543
No 6
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=2e-25 Score=188.25 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=116.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+..++|+|+|+||+++.+++|||+||+.++| ++|+|||+.|+|++++.+++.++|++++++||+.+++++
T Consensus 123 IIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eA 202 (830)
T PRK07003 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQA 202 (830)
T ss_pred EEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHH-hcCCCcccCccc-cCC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASR-QMNYPFVEGQVI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~-~~~~~~~~~~~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
+..|++.++||+|.++++|+... ..+..++.+.+. ..+ -...+.++.+.++.++
T Consensus 203 L~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~~d 260 (830)
T PRK07003 203 LRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAAGD 260 (830)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999976544 333456666554 222 3556788888877755
No 7
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=1.8e-25 Score=181.73 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=119.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||||+|+.+++++|++++|+|+.++.||++|+++++| ++|+|||+.|.|++++.+++..+|++++++||+.+++++
T Consensus 125 ~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eA 204 (484)
T PRK14956 125 YIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEG 204 (484)
T ss_pred EEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc-c--CCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI-L--TGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~ 133 (137)
+..|++.++||+|.|+++|+.+... +..++...+. . ..+...+.++++.|...+
T Consensus 205 L~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d 262 (484)
T PRK14956 205 LFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPD 262 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999875433 3346666664 2 336777888888888754
No 8
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.92 E-value=5.1e-25 Score=180.23 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=116.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++|+|+|++||||.++.|||+|+++.|+ .|++|||+.|.|++++.+++...|..++.+||+.+++++
T Consensus 123 yiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~a 202 (515)
T COG2812 123 YIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDA 202 (515)
T ss_pred EEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHH
Confidence 4899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCC-CcccCccc-cCC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNY-PFVEGQVI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~-~~~~~~~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
+..+++.++|++|+++++|+.+...+. .++.+.+. ..| -...+...+..|+.++
T Consensus 203 L~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~~~i~~~d 260 (515)
T COG2812 203 LSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLLEAILKGD 260 (515)
T ss_pred HHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 999999999999999999998886654 35555554 233 3555566666666554
No 9
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=1.1e-24 Score=181.72 Aligned_cols=132 Identities=20% Similarity=0.203 Sum_probs=113.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++|+|+|+||+|++++.|||+||++++| ++|+|||+.|+|++++.+++.++|++++.+||+.+++++
T Consensus 128 iIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eA 207 (700)
T PRK12323 128 YMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNA 207 (700)
T ss_pred EEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHh-cCCCcccCccc-cCC--cHHHHHHHHHHHHhc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQ-MNYPFVEGQVI-LTG--WEDDITNIATKIIEE 132 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~-~~~~~~~~~~~-~~~--~~~~~~~i~~~i~~~ 132 (137)
+..|++.++|++|.++++++.... .+..++.+.+. ..+ -...+.++++.+..+
T Consensus 208 L~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~~ 264 (700)
T PRK12323 208 LRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQSYLVRLLDALAAE 264 (700)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcC
Confidence 999999999999999999876443 33345555443 233 244566666666644
No 10
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=3.4e-24 Score=176.45 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=119.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|+.++.|||+|+++.++ ++|+|||..|+|++++.+++.+++.+++++||+.+++++
T Consensus 123 ~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~a 202 (509)
T PRK14958 123 YLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAA 202 (509)
T ss_pred EEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc-c--CCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI-L--TGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~ 133 (137)
+..+++.++||+|.++|.|+.+... +..++.+.|. . ..-+..++++++.|..++
T Consensus 203 l~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~~d 260 (509)
T PRK14958 203 LDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAAKA 260 (509)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999765543 3446666664 2 346888888888888754
No 11
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=8.8e-24 Score=174.22 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=117.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|++++.|||+|+++.++ ++|+|||+.|+|.+++.+++..++.+++++||+.+++++
T Consensus 121 vIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~A 200 (535)
T PRK08451 121 FIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEA 200 (535)
T ss_pred EEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcC-CCcccCccc-cCC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMN-YPFVEGQVI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~-~~~~~~~~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+...+ ..++.+.+. ..+ -+..+.++++.++.++
T Consensus 201 l~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~~lg~~~~~~I~~li~ai~~~d 258 (535)
T PRK08451 201 LEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGLLDPSKLEDFFQAILNQD 258 (535)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999998765433 356666654 223 4667888888777654
No 12
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=1.1e-23 Score=176.69 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=103.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|+|+.+++|+|+|++|+|+++++|||+|+++++| ++|+|||+.|+|++++.+++..+|.+++++||+.+++++
T Consensus 123 ~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~a 202 (647)
T PRK07994 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRA 202 (647)
T ss_pred EEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcC-CCcccCcc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMN-YPFVEGQV 113 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~-~~~~~~~~ 113 (137)
+..|+..++||+|.++++++.+...+ ..++.+.+
T Consensus 203 L~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v 237 (647)
T PRK07994 203 LQLLARAADGSMRDALSLTDQAIASGNGQVTTDDV 237 (647)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999997655433 33544443
No 13
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=1.3e-23 Score=175.04 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=116.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|+++||+|+.++.|||+|++++++ ++|+|||+.|+|++++.+++.++|.++++++|+.+++++
T Consensus 122 vIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~a 201 (584)
T PRK14952 122 FIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAV 201 (584)
T ss_pred EEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcC--CCcccCccc-cCC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMN--YPFVEGQVI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~--~~~~~~~~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
+..+++.++||+|.++|.|+.+.... ..++...+. ..+ -+..++++++.+..++
T Consensus 202 l~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~llg~~~~~~i~~lv~al~~~d 260 (584)
T PRK14952 202 YPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLLGATDVALIDDAVDALAADD 260 (584)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999887542 346655554 222 4666777777766544
No 14
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=2.7e-23 Score=177.95 Aligned_cols=132 Identities=19% Similarity=0.223 Sum_probs=111.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|+|+.+++++|+|+||+|+++++|||+|+++++| ++|+|||+.|+|++++.+++..+|.+++.++|+.+++++
T Consensus 123 iIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeA 202 (944)
T PRK14949 123 YLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEA 202 (944)
T ss_pred EEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcC-CCcccCccc-cCC--cHHHHHHHHHHHHhc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMN-YPFVEGQVI-LTG--WEDDITNIATKIIEE 132 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~-~~~~~~~~~-~~~--~~~~~~~i~~~i~~~ 132 (137)
+..|+..++||+|.++++|+.+...+ ..++.+.+. ..+ -..++..+++.|..+
T Consensus 203 L~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V~~llG~iD~~~V~~llksI~~~ 259 (944)
T PRK14949 203 LTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTMLGSIDEQHVIALLKALTDA 259 (944)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999997544322 223333332 111 244455666665543
No 15
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=5.2e-23 Score=172.01 Aligned_cols=133 Identities=23% Similarity=0.235 Sum_probs=117.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|+|+..++++|++++|+++.+++|||+|+++.++ ++++|||..|+|++++.+++.++|.+++++||+.+++++
T Consensus 122 ~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eA 201 (702)
T PRK14960 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDA 201 (702)
T ss_pred EEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHh-cCCCcccCccc-cCC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQ-MNYPFVEGQVI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~-~~~~~~~~~~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
+..|++.++||+|.++|.|+.+.. .+..++.+.+. ..+ -+..++++++.++.++
T Consensus 202 L~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e~IfdLldAI~k~d 259 (702)
T PRK14960 202 IWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQ 259 (702)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHHHHHHHHHHHHhcC
Confidence 999999999999999999865443 33446666654 233 3556888888887765
No 16
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=5.5e-23 Score=171.99 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=117.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|+|+.+++|+|++++|+|+.++.|||+|+++.++ ++++|||..|+|++++.+++..+|.+++.+||+.+++++
T Consensus 128 ~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~A 207 (618)
T PRK14951 128 FMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQA 207 (618)
T ss_pred EEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcC-CCcccCccc-c--CCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMN-YPFVEGQVI-L--TGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~-~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~ 133 (137)
+..|++.++||+|.++++++.+...+ ..++...+. . ..-+..++++++.+..++
T Consensus 208 L~~La~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d 265 (618)
T PRK14951 208 LRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQGD 265 (618)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999997554333 346655553 2 224777888888887765
No 17
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=5e-23 Score=168.43 Aligned_cols=134 Identities=25% Similarity=0.271 Sum_probs=119.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|++++.|||+|++..++ ++|+|||+.+.|++++.+++.+++..++++||+.+++++
T Consensus 120 vIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eA 199 (491)
T PRK14964 120 YIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEES 199 (491)
T ss_pred EEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc-cCC--cHHHHHHHHHHHHhcCC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI-LTG--WEDDITNIATKIIEEQS 134 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~-~~~--~~~~~~~i~~~i~~~~~ 134 (137)
+..|++.++||+|.+++.|+.+... +..++.+.|. ..+ -+..++++++.|+.++.
T Consensus 200 L~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~llg~~~~~~If~L~~aI~~~d~ 258 (491)
T PRK14964 200 LKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVDKHILEDLVEAILLGDA 258 (491)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHccCCHHHHHHHHHHHHCCCH
Confidence 9999999999999999999877643 3456666654 222 36668899999888763
No 18
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=5e-23 Score=171.80 Aligned_cols=133 Identities=23% Similarity=0.308 Sum_probs=115.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|+++||+|+.++.|||+|+++.+| ++|+|||+.|.|++++.+++..+|..+++++|+.+++++
T Consensus 123 vIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~a 202 (576)
T PRK14965 123 FIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAA 202 (576)
T ss_pred EEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc-cCC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+... +..++...+. .++ -+..+.++++.++.++
T Consensus 203 l~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~llG~~~~~~l~~ll~al~~~d 260 (576)
T PRK14965 203 LALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVVDRRLLLDISAAVFGRD 260 (576)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999876533 3345555443 222 3555777777776654
No 19
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.89 E-value=7.3e-23 Score=175.86 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=117.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|+|+.+++|+|+|+||+++.++.|||+|++.++| ++|+|||++|+|++++.+++.++|.+++++||+.+++++
T Consensus 124 ~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~ea 203 (824)
T PRK07764 124 FIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGV 203 (824)
T ss_pred EEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc--CCCcccCccc-c--CCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM--NYPFVEGQVI-L--TGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~--~~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~ 133 (137)
+..+++.++||+|.+++.|+.+... ...++...+. . ...+..++++++.+..++
T Consensus 204 l~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~~~D 262 (824)
T PRK07764 204 LPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALAAGD 262 (824)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999987743 2346666554 2 335667777877776543
No 20
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=1.5e-22 Score=160.72 Aligned_cols=133 Identities=20% Similarity=0.200 Sum_probs=117.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+..++++|++++|+|+.++.||++|++.+++ ++|+|||+.++|++++.+++.++|..+++++|+.+++++
T Consensus 123 iIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~a 202 (363)
T PRK14961 123 YLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYA 202 (363)
T ss_pred EEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcC-CCcccCccc---cCCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMN-YPFVEGQVI---LTGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+...+ ..++...+. ....+..++++++.+..++
T Consensus 203 l~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l~~~~~~~i~~l~~ai~~~~ 260 (363)
T PRK14961 203 LKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLLNEKQSFLLTDALLKKD 260 (363)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999998775443 335555443 2346778888888887654
No 21
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=3e-22 Score=165.67 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=112.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|+|+.+++++|++++|+|++++.|||+|++..++ ++|+|||++++|++++.+++..+|..++++||+.+++++
T Consensus 123 iIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~A 202 (546)
T PRK14957 123 YLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQS 202 (546)
T ss_pred EEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc-c--CCcHHHHHHHHHHHHhc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI-L--TGWEDDITNIATKIIEE 132 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~~~i~~~ 132 (137)
+..++..++||+|.++|+|+.+... +..++.+.+. . ..-+..++++++.+..+
T Consensus 203 l~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V~~~l~~~~~~~v~~ll~Al~~~ 259 (546)
T PRK14957 203 LEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLGIIDSEEVYSIINAIIDN 259 (546)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHccCCHHHHHHHHHHHHcC
Confidence 9999999999999999999976543 3334443332 1 12345566766666553
No 22
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=1.8e-22 Score=169.68 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=118.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+..++++|+++||++++++.|||+|+++.++ .+|+|||..|+|++++.+++..+|.+++++||+.+++++
T Consensus 123 IIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eA 202 (709)
T PRK08691 123 YIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPA 202 (709)
T ss_pred EEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcC-CCcccCccc-cCC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMN-YPFVEGQVI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~-~~~~~~~~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
+..|++.++||+|.++++|+.+...+ ..++.+.|. ..+ -+..++++++.|+.++
T Consensus 203 L~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~~d 260 (709)
T PRK08691 203 LQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQD 260 (709)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHcCC
Confidence 99999999999999999997765433 346655544 223 3667888888888765
No 23
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=5e-22 Score=163.46 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=123.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+..++++|++.+|+++.++.||++|+++.++ ++++|||..|+|.+++.+++..+|.++++++|+.+++++
T Consensus 120 VIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~A 199 (504)
T PRK14963 120 YILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEA 199 (504)
T ss_pred EEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc---cCCcHHHHHHHHHHHHhcCC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI---LTGWEDDITNIATKIIEEQS 134 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~~~ 134 (137)
+..+++.++||+|.++|.|+.+...+..++.+.+. ...|+..++++++.+..++.
T Consensus 200 l~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al~~~d~ 257 (504)
T PRK14963 200 LQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAALAQGDA 257 (504)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHHHcCCH
Confidence 99999999999999999999987665567777765 35589999999999987653
No 24
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=2.6e-22 Score=166.03 Aligned_cols=133 Identities=22% Similarity=0.240 Sum_probs=113.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++|+|++++|+|+.++.|||+|++++++ ++|+|||+.++|++++.+++.++|.+++++||+.+++++
T Consensus 123 vIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~a 202 (527)
T PRK14969 123 YIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATA 202 (527)
T ss_pred EEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCC-CcccCccc-cCC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNY-PFVEGQVI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~-~~~~~~~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
+..+++.++||+|.++++++.+...+. .++...+. ..+ -+..++++++.+..++
T Consensus 203 l~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v~~~~~~~~~~~i~~ll~al~~~~ 260 (527)
T PRK14969 203 LQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLGAIDQDYLFALLEALLAQD 260 (527)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999986654433 34444432 122 2455667777766543
No 25
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.88 E-value=1.7e-22 Score=155.82 Aligned_cols=133 Identities=22% Similarity=0.244 Sum_probs=122.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
||+||+|.|+.+||++|++++|++..+++|.++||++.++ ++++|||..|+|.+++.++...++.++++.|..+++++.
T Consensus 135 vILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~ 214 (360)
T KOG0990|consen 135 VILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEG 214 (360)
T ss_pred EEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHH
Confidence 6899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCc-----cc-cCC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQ-----VI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~-----~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
...++..+.||||.++|.||.........++.. ++ +.+ .+.++..|.++++...
T Consensus 215 ~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~ 276 (360)
T KOG0990|consen 215 YSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGE 276 (360)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCChhHHHHHHHHHhcCc
Confidence 999999999999999999999987766666666 55 555 4668899999988764
No 26
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=5.1e-22 Score=165.28 Aligned_cols=133 Identities=22% Similarity=0.320 Sum_probs=115.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|+.++.|||+|+.++++ ++|+|||+.+.|++++.+++..+|..+++++|+.+++++
T Consensus 123 iIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~a 202 (559)
T PRK05563 123 YIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEA 202 (559)
T ss_pred EEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc-cCC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+... +..++.+.+. .++ -+..++++++.+..++
T Consensus 203 l~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~~vlg~~~~~~i~~l~~al~~~d 260 (559)
T PRK05563 203 LRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVTGSVSQEALDDLVDAIVEGD 260 (559)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 9999999999999999999877543 3345555544 223 3555677777776554
No 27
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=6.1e-22 Score=162.81 Aligned_cols=134 Identities=23% Similarity=0.224 Sum_probs=120.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|+.++.||++|++..++ ++|+|||+.+.|++++.+++.+++..++++||+.+++++
T Consensus 132 vIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eA 211 (507)
T PRK06645 132 FIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEA 211 (507)
T ss_pred EEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCC----CcccCccc---cCCcHHHHHHHHHHHHhcCC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNY----PFVEGQVI---LTGWEDDITNIATKIIEEQS 134 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~----~~~~~~~~---~~~~~~~~~~i~~~i~~~~~ 134 (137)
+..|+..++||+|.+++.|+.+...+. .++.+.|. ...-+..++++++.|+.++.
T Consensus 212 L~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~ 273 (507)
T PRK06645 212 LRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIHRET 273 (507)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCH
Confidence 999999999999999999998754332 47666664 23368889999999987763
No 28
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=4.7e-22 Score=166.86 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=116.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|+.++.|||+|++..++ ++|+|||.+++|.+++.+++..+|..+++++|+.+++++
T Consensus 125 vIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~a 204 (614)
T PRK14971 125 YIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEA 204 (614)
T ss_pred EEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHh-cCCCcccCccc---cCCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQ-MNYPFVEGQVI---LTGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~-~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~~ 133 (137)
+..|+..++||+|.+++.|+.+.. .+..++...+. ...-+..++++++.+++++
T Consensus 205 l~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~~~~ 262 (614)
T PRK14971 205 LNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALLAGK 262 (614)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999987643 34446655443 2223445688888888765
No 29
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.86 E-value=3e-21 Score=161.40 Aligned_cols=133 Identities=17% Similarity=0.220 Sum_probs=116.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
|||||+|.|+.+++++|++++|+|+.++.|||+|++..++ ++|+|||+.|.|++++.+++..||.++++++|+.+++++
T Consensus 136 vIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eA 215 (598)
T PRK09111 136 YIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEA 215 (598)
T ss_pred EEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCC-CcccCccc-c--CCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNY-PFVEGQVI-L--TGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~-~~~~~~~~-~--~~~~~~~~~i~~~i~~~~ 133 (137)
+..|+..++||+|.+++.|+.+...+. .++.+.|- . ...+..++++.+.++.++
T Consensus 216 l~lIa~~a~Gdlr~al~~Ldkli~~g~g~It~e~V~~llg~~~~~~if~L~~ai~~gd 273 (598)
T PRK09111 216 LALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRARVIDLFEALMRGD 273 (598)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999987654332 35555554 2 335667778887777654
No 30
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.86 E-value=2.3e-21 Score=163.92 Aligned_cols=132 Identities=25% Similarity=0.245 Sum_probs=112.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|+++||+|+.++.|||+|+++.+| ++|+|||+.++|.+++.+++..+|..+++++|+.+++++
T Consensus 122 ~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eA 201 (725)
T PRK07133 122 YIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNA 201 (725)
T ss_pred EEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCC-CcccCccc-cCC--cHHHHHHHHHHHHhc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNY-PFVEGQVI-LTG--WEDDITNIATKIIEE 132 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~-~~~~~~~~-~~~--~~~~~~~i~~~i~~~ 132 (137)
+..++..++||+|.|+++|+.+...+. .++...+. ..+ .+..+..+++.|...
T Consensus 202 l~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V~ellg~~~~e~If~Ll~aI~~k 258 (725)
T PRK07133 202 LKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFGLVSNENLINLLNLLYSK 258 (725)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCHHHHHHHHHHHHcC
Confidence 999999999999999999997754332 24444332 122 344466666666554
No 31
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.86 E-value=1.9e-21 Score=161.84 Aligned_cols=133 Identities=22% Similarity=0.224 Sum_probs=113.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|++++.|||+|+.+.++ ++|+|||+.++|.+++.+++..+|..++.++|+.+++++
T Consensus 123 IIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~ea 202 (605)
T PRK05896 123 YIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNA 202 (605)
T ss_pred EEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCC-CcccCcccc-C--CcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNY-PFVEGQVIL-T--GWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~-~~~~~~~~~-~--~~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.|++.|+.+..... +++...+.. . .-+..+..+++.+...+
T Consensus 203 l~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V~ellg~~~~~~Vf~Ll~AI~~kd 260 (605)
T PRK05896 203 IDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTFGLVDNNKKINLIELIQKND 260 (605)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCCHHHHHHHHHHHHCCC
Confidence 999999999999999999998765332 255544331 1 12344566666665543
No 32
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=4e-21 Score=161.37 Aligned_cols=132 Identities=22% Similarity=0.234 Sum_probs=115.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|+.++.|||+|+++.++ ++|+|||+.+.|++++.+++..+|.++++++|+.+++++
T Consensus 125 iIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~a 204 (620)
T PRK14948 125 YVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEA 204 (620)
T ss_pred EEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc-c--CCcHHHHHHHHHHHHhc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI-L--TGWEDDITNIATKIIEE 132 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~~~i~~~ 132 (137)
+..+++.++||+|.|+++|+.+......++.+.+. . ...+..+.++++.+..+
T Consensus 205 l~~La~~s~G~lr~A~~lLeklsL~~~~It~e~V~~lvg~~~e~~i~~Ll~ai~~~ 260 (620)
T PRK14948 205 LTLVAQRSQGGLRDAESLLDQLSLLPGPITPEAVWDLLGAVPEQDLLNLLKALASN 260 (620)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHHHHHHhcCCCHHHHHHHHHHHHCC
Confidence 99999999999999999999887655555554443 1 12355566777776643
No 33
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=3.4e-21 Score=160.86 Aligned_cols=131 Identities=14% Similarity=0.147 Sum_probs=111.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
|||||+|.|+.+++++|++++|+++.++.|||+|+++.++ ++|+|||++|+|++++.+++..+|..+++++|+.+++++
T Consensus 123 IIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~ea 202 (624)
T PRK14959 123 FIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAA 202 (624)
T ss_pred EEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCC-CcccCccc-c--CCcHHHHHHHHHHHHh
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNY-PFVEGQVI-L--TGWEDDITNIATKIIE 131 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~-~~~~~~~~-~--~~~~~~~~~i~~~i~~ 131 (137)
+..+++.++||+|.++++|+.+...+. .++.+.+. . ......++++++.+..
T Consensus 203 l~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V~~~lg~~~~e~vfeLl~AL~~ 258 (624)
T PRK14959 203 VRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLGLAGQELFLRLMEALAA 258 (624)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 999999999999999999986553332 35544443 1 2234456666666544
No 34
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.85 E-value=1.1e-20 Score=153.98 Aligned_cols=132 Identities=22% Similarity=0.274 Sum_probs=113.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
|||||+|.|+.+++++|++++|+|++++.||++|++..++ ++|+|||..++|++++.+++.++|..+++++|+.+++++
T Consensus 125 vIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~a 204 (451)
T PRK06305 125 YIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREA 204 (451)
T ss_pred EEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc---cCCcHHHHHHHHHHHHhc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI---LTGWEDDITNIATKIIEE 132 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~i~~~ 132 (137)
+..++..++||+|.+++.|+.+... +..++...+. ...-+..++++++.+..+
T Consensus 205 l~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~~vf~L~~ai~~~ 261 (451)
T PRK06305 205 LLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLYTLDEAITTQ 261 (451)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999987632 2234444332 122456666666666543
No 35
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.85 E-value=9.2e-21 Score=157.71 Aligned_cols=133 Identities=21% Similarity=0.243 Sum_probs=114.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|+.++.|||+|+++.++ ++|+|||+.++|++++.+++..+|.++++++|+.+++++
T Consensus 123 vIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eA 202 (563)
T PRK06647 123 YIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEA 202 (563)
T ss_pred EEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc-c--CCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI-L--TGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~ 133 (137)
+..|+..++||+|.+++.|+.+... +..++...+. . ...+..+.++++.|..++
T Consensus 203 l~lLa~~s~GdlR~alslLdklis~~~~~It~e~V~~llg~~~~~~if~LidaI~~~D 260 (563)
T PRK06647 203 LKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGLTGDEFLEKLASSILNED 260 (563)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999876543 2335544443 1 224556777777776654
No 36
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=1.2e-20 Score=154.19 Aligned_cols=133 Identities=21% Similarity=0.221 Sum_probs=117.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++.+|++++++.||++|+++.++ ++|+|||.++.|.+++.+++..+++.+++++|+.+++++
T Consensus 121 vIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~ea 200 (472)
T PRK14962 121 YIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREA 200 (472)
T ss_pred EEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999998899 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc---cCCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI---LTGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~i~~~~ 133 (137)
+..|++.++||+|.++|.|+.+... +..++.+.+. ....+..+.++++.|..++
T Consensus 201 l~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~si~~~d 258 (472)
T PRK14962 201 LSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINAIFNGD 258 (472)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999987643 2346655553 2235667788888887654
No 37
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=2.4e-20 Score=156.41 Aligned_cols=133 Identities=21% Similarity=0.228 Sum_probs=114.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|++++.|||+|++..++ ++|+|||++++|++++.+++..+|..+++++|+.+++++
T Consensus 131 vIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~ea 210 (620)
T PRK14954 131 YIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADA 210 (620)
T ss_pred EEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcC------CCcccCccc---cCCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMN------YPFVEGQVI---LTGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~------~~~~~~~~~---~~~~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+.... ..++...+. ...-+..++++++.|..++
T Consensus 211 l~~La~~s~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d 273 (620)
T PRK14954 211 LQLIARKAQGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAEND 273 (620)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999766432 235544332 1224666777777766554
No 38
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=2.4e-20 Score=153.01 Aligned_cols=133 Identities=20% Similarity=0.281 Sum_probs=115.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|+.++.||++|++..++ ++|+|||+.+.|++++.+++..+|..+++++|+.+++++
T Consensus 123 vIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~a 202 (486)
T PRK14953 123 YIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKA 202 (486)
T ss_pred EEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcC-CCcccCcccc-CC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMN-YPFVEGQVIL-TG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~-~~~~~~~~~~-~~--~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+...+ ..++...+.. .+ -+..++++++.|+.++
T Consensus 203 l~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai~~~d 260 (486)
T PRK14953 203 LDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLLLESD 260 (486)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHHHCCC
Confidence 99999999999999999999875433 2355555442 22 3555778888777654
No 39
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.84 E-value=7.1e-20 Score=142.78 Aligned_cols=133 Identities=27% Similarity=0.368 Sum_probs=120.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
|||||+|.|+.++++.|++++|+++.+++||++|+.+.++ ++|+|||..+.|.+++.+++..++..++.++|+.+++++
T Consensus 129 lilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~a 208 (337)
T PRK12402 129 ILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDG 208 (337)
T ss_pred EEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999998899999999988888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc---c-CCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI---L-TGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~---~-~~~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+...+..++...+- . ..++..++++++.+..++
T Consensus 209 l~~l~~~~~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~~ 266 (337)
T PRK12402 209 LELIAYYAGGDLRKAILTLQTAALAAGEITMEAAYEALGDVGTDEVIESLLDAAEAGD 266 (337)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999887555567766654 2 357889999999887764
No 40
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.84 E-value=7.8e-20 Score=141.48 Aligned_cols=133 Identities=30% Similarity=0.473 Sum_probs=120.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|||+|.++...++.|+++++.++.++.||++||...++ ++++|||..+.|++++.+++..++..++.++|+.+++++
T Consensus 106 viiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~a 185 (319)
T PRK00440 106 IFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDA 185 (319)
T ss_pred EEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5799999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc---cCCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI---LTGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+...+..++.+.+. ....+..++++++.++.++
T Consensus 186 l~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~~~~~~ 242 (319)
T PRK00440 186 LEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELALNGD 242 (319)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999988766667777665 2346778888888887543
No 41
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.82 E-value=1.2e-19 Score=142.65 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=115.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
|+|||+|.|+.+++++|++.+|+++.++.||++|+++.++ ++|+|||..+.|++|+.+++..++..+++++|+.+++++
T Consensus 121 viidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a 200 (355)
T TIGR02397 121 YIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEA 200 (355)
T ss_pred EEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCC-CcccCccc---cCCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNY-PFVEGQVI---LTGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~-~~~~~~~~---~~~~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+...+. .++...+- ....+..++++++.+++++
T Consensus 201 ~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~~~~ 258 (355)
T TIGR02397 201 LELIARAADGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELLEAILNKD 258 (355)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999998765433 25544443 2235667788888877644
No 42
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=9e-20 Score=146.44 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=114.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++.+|+|++.+.||++|++..++ ++|+|||.+++|++++.+++..++..+++++|+.+++++
T Consensus 131 vIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~a 210 (397)
T PRK14955 131 YIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADA 210 (397)
T ss_pred EEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999998999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc------CCCcccCccc---cCCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM------NYPFVEGQVI---LTGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~------~~~~~~~~~~---~~~~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+... +..++.+.+. ...-+..++++++.+.+++
T Consensus 211 l~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~ 273 (397)
T PRK14955 211 LQLIGRKAQGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGD 273 (397)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999976532 2235554442 2224656777777766544
No 43
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=1.6e-19 Score=143.33 Aligned_cols=134 Identities=22% Similarity=0.237 Sum_probs=115.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
|+|||+|.|+..++++|++.+|+++.++.||++|+...++ ++++|||.+++|++++.+++..++..+++++|+.+++++
T Consensus 112 viIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~a 191 (367)
T PRK14970 112 YIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDA 191 (367)
T ss_pred EEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc---cCCcHHHHHHHHHHHHhcCC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI---LTGWEDDITNIATKIIEEQS 134 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~i~~~~~ 134 (137)
+..++..++||+|.+++.|+.+... +.+++...+. ...-+..++++++.+..++.
T Consensus 192 l~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~~ai~~~~~ 250 (367)
T PRK14970 192 LHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDLILENKI 250 (367)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHcCCH
Confidence 9999999999999999999987743 3335444332 22234567788888877654
No 44
>PRK04195 replication factor C large subunit; Provisional
Probab=99.81 E-value=1.7e-19 Score=147.91 Aligned_cols=133 Identities=22% Similarity=0.308 Sum_probs=117.0
Q ss_pred CcccccCcCCH----HHHHHHHHHHHhccCCceEEEEeCCCCCc-h-hhhhcceeeEecCCCHHHHHHHHHHHHHHcCCC
Q 042716 1 IILCEADKLST----DALLYMRWLLERYKGLNKVFFCCSDVSKL-Q-PIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQ 74 (137)
Q Consensus 1 iiiDEid~l~~----~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~-~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~ 74 (137)
|||||+|.|+. +++++|+++++ ..++++||+||++..+ . +|+|||..+.|++|+..++..+|..++.++|+.
T Consensus 102 IiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~ 179 (482)
T PRK04195 102 ILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE 179 (482)
T ss_pred EEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 68999999987 67899999999 5678899999999887 5 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCcc--c-cCCcHHHHHHHHHHHHhcCCC
Q 042716 75 LPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQV--I-LTGWEDDITNIATKIIEEQSP 135 (137)
Q Consensus 75 i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~--~-~~~~~~~~~~i~~~i~~~~~~ 135 (137)
++++++..|++.++||+|.++|.||.+......++.+.+ + ..+|+..++++++.++..+.+
T Consensus 180 i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~d~~~~if~~l~~i~~~k~~ 243 (482)
T PRK04195 180 CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRRDREESIFDALDAVFKARNA 243 (482)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcCCCCCCHHHHHHHHHCCCCH
Confidence 999999999999999999999999997654445665555 2 377888999999999986543
No 45
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=3.4e-19 Score=149.15 Aligned_cols=133 Identities=22% Similarity=0.226 Sum_probs=116.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
|||||+|.|+.+++++|++++|+++.++.|||+|++..++ ++|+|||..+.|++++.+++..++.+++.++|+.+++++
T Consensus 124 vIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~ea 203 (585)
T PRK14950 124 YIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGA 203 (585)
T ss_pred EEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc---cCCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI---LTGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+... +..++.+.+. ...-+..++++++.++.++
T Consensus 204 l~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V~~ll~~s~~~~vf~Lidal~~~d 261 (585)
T PRK14950 204 LEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSLLGISGDEEVKALAEALLAKD 261 (585)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999987642 2345554442 2224667788888887655
No 46
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.81 E-value=9.8e-20 Score=143.38 Aligned_cols=94 Identities=19% Similarity=0.228 Sum_probs=86.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||++|.|+.+++|+|+|++|||++++.|||+|++++++ +||+|||+.+.|++|+.+++..+|.+ ...++++.
T Consensus 112 ~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~-----~~~~~~~~ 186 (334)
T PRK07993 112 VWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSR-----EVTMSQDA 186 (334)
T ss_pred EEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHH-----ccCCCHHH
Confidence 5899999999999999999999999999999999999999 99999999999999999999999964 23467777
Q ss_pred HHHHHHHcCCcHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~ 99 (137)
+..++..++|++..|+.+++
T Consensus 187 a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 187 LLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred HHHHHHHcCCCHHHHHHHhc
Confidence 88899999999999998865
No 47
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.80 E-value=2e-19 Score=142.46 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=91.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|+.++.|||+|+.+.++ ++|+|||+.++|++++.+++..+|.+.+..++ +++++
T Consensus 145 viIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~ 222 (351)
T PRK09112 145 VIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEI 222 (351)
T ss_pred EEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHH
Confidence 5899999999999999999999999999999999999999 99999999999999999999999998655444 77999
Q ss_pred HHHHHHHcCCcHHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFEA 100 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~ 100 (137)
+..++..++|++|.|+++++.
T Consensus 223 ~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 223 TEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred HHHHHHHcCCCHHHHHHHHhc
Confidence 999999999999999999953
No 48
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.80 E-value=8.2e-20 Score=133.48 Aligned_cols=101 Identities=21% Similarity=0.136 Sum_probs=93.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhccee-------------eEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTV-------------IQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~-------------i~~~~~~~~~i~~~l~~ 66 (137)
++|+++|.|+.+++|+|+|++||||.++.|||+|++++++ +|++|||+. +.|++++.+++...|.+
T Consensus 58 ~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 58 IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999 999999986 77999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 67 IAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 67 i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.++|++...++++..|+..+.|.+|+++.+.+..-
T Consensus 138 -~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l 172 (206)
T PRK08485 138 -LEKENKLSKEELKELIESLLKECVKYKIPLNEEEL 172 (206)
T ss_pred -HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 78899988899999999999999999987776543
No 49
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.80 E-value=2.8e-19 Score=139.73 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=87.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||++|.|+.+++|+|+|++|+|+ ++.|||+|+++.++ +||+|||+.++|++++.+++..+|......++.+ ..
T Consensus 128 vII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~ 203 (314)
T PRK07399 128 VVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---IN 203 (314)
T ss_pred EEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hH
Confidence 5899999999999999999999999 88999999999999 9999999999999999999999999876555433 23
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
...++..++||++.|++.++...
T Consensus 204 ~~~l~~~a~Gs~~~al~~l~~~~ 226 (314)
T PRK07399 204 FPELLALAQGSPGAAIANIEQLQ 226 (314)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Confidence 57889999999999999997543
No 50
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.78 E-value=1e-18 Score=136.76 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=84.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||++|.|+.+++|+|+|++|||++++.|||+|++++++ +||+|||+.++|.+|+.+++..+|.. .| +++..
T Consensus 117 ~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~ 190 (319)
T PRK08769 117 VIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERA 190 (319)
T ss_pred EEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHH
Confidence 5899999999999999999999999999999999999999 99999999999999999999999974 34 45666
Q ss_pred HHHHHHHcCCcHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~ 99 (137)
...++..++|.+..|+..++
T Consensus 191 a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 191 AQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred HHHHHHHcCCCHHHHHHHhc
Confidence 67789999999998887764
No 51
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.78 E-value=1.2e-18 Score=136.58 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=83.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||++|.|+.+++|+|+|++|||++++.|||+|++++++ +||+|||+.++|.+|+.+++..+|.... ..++..
T Consensus 111 ~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~ 185 (325)
T PRK06871 111 VYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS-----SAEISE 185 (325)
T ss_pred EEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh-----ccChHH
Confidence 5799999999999999999999999999999999999999 9999999999999999999999998643 223445
Q ss_pred HHHHHHHcCCcHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~ 99 (137)
+...+..++|.+..|+.+++
T Consensus 186 ~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 186 ILTALRINYGRPLLALTFLE 205 (325)
T ss_pred HHHHHHHcCCCHHHHHHHhh
Confidence 66778889999988887764
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.77 E-value=2.2e-18 Score=136.49 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=89.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH--HcCCC-
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE--QEGIQ- 74 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~--~egi~- 74 (137)
+||||||++++..|.+|+..+| .+...||-+|++.+. + ++|+|||++|.|++++.+++.+.|.+.+. .+|+.
T Consensus 108 LflDEIHRfnK~QQD~lLp~vE--~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~ 185 (436)
T COG2256 108 LFLDEIHRFNKAQQDALLPHVE--NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGG 185 (436)
T ss_pred EEEehhhhcChhhhhhhhhhhc--CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCc
Confidence 5899999999999999999999 555556666655543 7 99999999999999999999999999554 55666
Q ss_pred ----CCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCC
Q 042716 75 ----LPHQLAEKIADNSKNNLRQAIRSFEASRQMNY 106 (137)
Q Consensus 75 ----i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~ 106 (137)
+++++...++..++||.|.++|+|+.+.....
T Consensus 186 ~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~ 221 (436)
T COG2256 186 QIIVLDEEALDYLVRLSNGDARRALNLLELAALSAE 221 (436)
T ss_pred ccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999986554
No 53
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=1.8e-18 Score=135.90 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=84.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||++|.|+.+++|+|+|++|+|++++.|||+|++++++ +||+|||+.++|.+|+.+++..+|.... -..+++.
T Consensus 110 ~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~----~~~~~~~ 185 (328)
T PRK05707 110 VLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL----PESDERE 185 (328)
T ss_pred EEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc----ccCChHH
Confidence 5799999999999999999999999999999999999999 9999999999999999999999997532 1345667
Q ss_pred HHHHHHHcCCcHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~ 99 (137)
...++..++|++..|+.+++
T Consensus 186 ~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 186 RIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred HHHHHHHcCCCHHHHHHHHC
Confidence 77889999999999887754
No 54
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=1.5e-18 Score=135.78 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=82.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||++|.|+.+++|+|+|++|||++++.|||+|++++++ +||+|||+.++|.+|+.+++..+|.. +|++ .
T Consensus 112 ~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~----~~~~----~ 183 (319)
T PRK06090 112 FVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKG----QGIT----V 183 (319)
T ss_pred EEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHH----cCCc----h
Confidence 5899999999999999999999999999999999999999 99999999999999999999999864 5654 2
Q ss_pred HHHHHHHcCCcHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~ 99 (137)
...++..++|++..|+.+++
T Consensus 184 ~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 184 PAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred HHHHHHHcCCCHHHHHHHhC
Confidence 35678889999999988775
No 55
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.76 E-value=2.6e-19 Score=138.61 Aligned_cols=93 Identities=35% Similarity=0.430 Sum_probs=83.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
|||||+|.|+.+++++|++++|+|+.+++|||+||++.++ +||+|||+.++|++++. +..++..+ +++
T Consensus 113 iiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~------~~~i~~~e-----~~~ 181 (325)
T COG0470 113 VIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSR------LEAIAWLE-----DQG 181 (325)
T ss_pred EEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCchH------HHHHHHhh-----ccc
Confidence 5899999999999999999999999999999999999999 99999999999998544 44444445 567
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQM 104 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~ 104 (137)
+..++..+.||+|.++|.||.....
T Consensus 182 l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 182 LEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 8999999999999999999999865
No 56
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.74 E-value=4.3e-18 Score=123.60 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=82.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
|||||+|.|++.++++|++.+|++++++.|||+|++..++ ++++|||.++.|.+++.+++.++|... | +++++
T Consensus 100 iiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~----g--i~~~~ 173 (188)
T TIGR00678 100 VIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ----G--ISEEA 173 (188)
T ss_pred EEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc----C--CCHHH
Confidence 5899999999999999999999999999999999998889 999999999999999999999999774 5 68999
Q ss_pred HHHHHHHcCCcHHHH
Q 042716 80 AEKIADNSKNNLRQA 94 (137)
Q Consensus 80 l~~i~~~~~gd~R~a 94 (137)
+..++..++||+|.|
T Consensus 174 ~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 174 AELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHHHcCCCcccC
Confidence 999999999999975
No 57
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.73 E-value=1.7e-17 Score=129.35 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=84.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||++|.|+.+++|+|++++|+|++++.|||+|++++++ +||+|||++++|.+++.+++..+|..... .++++.
T Consensus 97 ~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~ 172 (313)
T PRK05564 97 IIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEE 172 (313)
T ss_pred EEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHH
Confidence 5899999999999999999999999999999999999999 99999999999999999999999976332 467888
Q ss_pred HHHHHHHcCCcHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L 98 (137)
+..++..++|++..|...+
T Consensus 173 ~~~l~~~~~g~~~~a~~~~ 191 (313)
T PRK05564 173 KKSAIAFSDGIPGKVEKFI 191 (313)
T ss_pred HHHHHHHcCCCHHHHHHHh
Confidence 8999999999998887554
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.73 E-value=1.2e-17 Score=134.04 Aligned_cols=94 Identities=22% Similarity=0.334 Sum_probs=85.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+++++++|++++|+|+.++.||++|+++..+ +||+|||+.++|++|+.+++..+|.. ++| ++++.
T Consensus 121 iiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~ 195 (394)
T PRK07940 121 VVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPET 195 (394)
T ss_pred EEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHH
Confidence 5899999999999999999999999999999999999999 99999999999999999999999873 334 57888
Q ss_pred HHHHHHHcCCcHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~ 99 (137)
+..++..++|+++.|+.++.
T Consensus 196 a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 196 ARRAARASQGHIGRARRLAT 215 (394)
T ss_pred HHHHHHHcCCCHHHHHHHhc
Confidence 89999999999999987753
No 59
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.73 E-value=6.1e-17 Score=125.76 Aligned_cols=128 Identities=22% Similarity=0.358 Sum_probs=103.1
Q ss_pred CcccccCcC-CHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHH-------HHHHHHHc
Q 042716 1 IILCEADKL-STDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEV-------LEFIAEQE 71 (137)
Q Consensus 1 iiiDEid~l-~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~-------l~~i~~~e 71 (137)
++|||+|.+ +.++++.|+.++|+++.+++||++||...++ ++|+|||..+.|+.|+.++...+ +..++.++
T Consensus 104 liiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~ 183 (316)
T PHA02544 104 IIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAE 183 (316)
T ss_pred EEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999 7778899999999999999999999999999 99999999999999999876644 45567789
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccccCCcHHHHHHHHHHHH
Q 042716 72 GIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVILTGWEDDITNIATKII 130 (137)
Q Consensus 72 gi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 130 (137)
|+.++++++..+++.+.||+|.+++.|+.... +..++... +..-+...++++++.+.
T Consensus 184 ~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~-~~~i~~~~-l~~~~~~~~~~l~~~l~ 240 (316)
T PHA02544 184 GVEVDMKVLAALVKKNFPDFRRTINELQRYAS-TGKIDAGI-LSEVTNSDIDDVVEALK 240 (316)
T ss_pred CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCCCCHHH-HHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999998763 33333222 11113445555655543
No 60
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=1.8e-17 Score=130.31 Aligned_cols=93 Identities=24% Similarity=0.346 Sum_probs=81.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++|+|+|++|+||+++.|||+|+++.++ +||+|||++++|.+++.+++..+|.. +| ++++.
T Consensus 114 viI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~----~g--i~~~~ 187 (329)
T PRK08058 114 YIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE----EG--ISESL 187 (329)
T ss_pred EEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH----cC--CChHH
Confidence 5899999999999999999999999999999999999999 99999999999999999999888853 56 45666
Q ss_pred HHHHHHHcCCcHHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFEA 100 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~ 100 (137)
...++.. .|+++.|+.+++.
T Consensus 188 ~~~l~~~-~g~~~~A~~l~~~ 207 (329)
T PRK08058 188 ATLLAGL-TNSVEEALALSED 207 (329)
T ss_pred HHHHHHH-cCCHHHHHHHhcC
Confidence 6566655 4789999887653
No 61
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=2.5e-17 Score=129.97 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=79.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||++|.|+.+++|+|+|++|||++++.|||+|++++++ +||+|||+.++|++|+.+++..+|.. .|+ ++
T Consensus 136 ~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~----~~~--~~-- 207 (342)
T PRK06964 136 VVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAA----QGV--AD-- 207 (342)
T ss_pred EEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHH----cCC--Ch--
Confidence 5899999999999999999999999999999999999999 99999999999999999999999975 243 33
Q ss_pred HHHHHHHcCCcHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L 98 (137)
...++..++|++..|+.++
T Consensus 208 ~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 208 ADALLAEAGGAPLAALALA 226 (342)
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 2345777899999888765
No 62
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.70 E-value=9e-17 Score=127.93 Aligned_cols=96 Identities=20% Similarity=0.339 Sum_probs=86.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|||+|.|+..++++|++++|+|+.++.||++|++++.+ ++++|||+.++|.+++.+++..+|.. .+...+++.
T Consensus 145 viIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~----~~~~~~~~~ 220 (365)
T PRK07471 145 VIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAA----AGPDLPDDP 220 (365)
T ss_pred EEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHH----hcccCCHHH
Confidence 5899999999999999999999999999999999999999 99999999999999999999999976 334456666
Q ss_pred HHHHHHHcCCcHHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFEA 100 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~ 100 (137)
+..++..++|+++.++++++.
T Consensus 221 ~~~l~~~s~Gsp~~Al~ll~~ 241 (365)
T PRK07471 221 RAALAALAEGSVGRALRLAGG 241 (365)
T ss_pred HHHHHHHcCCCHHHHHHHhcc
Confidence 678999999999999999863
No 63
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.69 E-value=8.2e-17 Score=124.46 Aligned_cols=91 Identities=22% Similarity=0.304 Sum_probs=75.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||++|.|+.+++|+|+|++|||++++.|||+|++++++ |||+|||+.++|++ +.+++..+|. ++|+. .+.
T Consensus 108 ~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~----~~g~~--~~~ 180 (290)
T PRK07276 108 FIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE----QKGLL--KTQ 180 (290)
T ss_pred EEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH----HcCCC--hHH
Confidence 5899999999999999999999999999999999999999 99999999999966 6777666664 46754 444
Q ss_pred HHHHHHHcCCcHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~ 99 (137)
...++..+ |++..|+.+++
T Consensus 181 a~~la~~~-~s~~~A~~l~~ 199 (290)
T PRK07276 181 AELLAKLA-QSTSEAEKLAQ 199 (290)
T ss_pred HHHHHHHC-CCHHHHHHHhC
Confidence 44455444 57988888773
No 64
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.69 E-value=1.9e-17 Score=118.30 Aligned_cols=56 Identities=34% Similarity=0.389 Sum_probs=49.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPS 56 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~ 56 (137)
+||||+|.|+.++||+|+|+||+|+.+++|||+|+++.+| +||+|||+.++|+++|
T Consensus 106 iiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 106 IIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 5899999999999999999999999999999999999999 9999999999999875
No 65
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.68 E-value=1.6e-16 Score=120.71 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=79.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCC----------CHHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPP----------SKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~----------~~~~i~~~l~~i~~ 69 (137)
+||+++|+|+.+++|+|+|++|||++++.|||+|++++++ +||+|||+.+.|+++ +++++...+..
T Consensus 92 ~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~~~L~~--- 168 (261)
T PRK05818 92 YIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQYILLS--- 168 (261)
T ss_pred EEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHHHHHHHH---
Confidence 5899999999999999999999999999999999999999 999999999999888 55565555543
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
+.+ +++ .++..++|++.+++..++.+
T Consensus 169 ~~~--~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 169 FYS--VDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred ccC--ccH----HHHHHcCCCHHHHHHHHHHH
Confidence 222 343 77788999999999999965
No 66
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.67 E-value=4.1e-16 Score=121.17 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=80.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||++|.|+.+++++|++++|+||+++.|||+|+++.++ +||+|||++++|.+++.+++..+|.. .| ++++.
T Consensus 94 vII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~----~~--~~~~~ 167 (299)
T PRK07132 94 LIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS----KN--KEKEY 167 (299)
T ss_pred EEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH----cC--CChhH
Confidence 5899999999999999999999999999999999999999 99999999999999999999999875 24 56777
Q ss_pred HHHHHHHcCCcHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L 98 (137)
...++..++ ++.+|+.++
T Consensus 168 a~~~a~~~~-~~~~a~~~~ 185 (299)
T PRK07132 168 NWFYAYIFS-NFEQAEKYI 185 (299)
T ss_pred HHHHHHHcC-CHHHHHHHH
Confidence 677777776 488888765
No 67
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=2.6e-16 Score=121.58 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=67.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||++|.|+.+++|+|+|++|||++++.|||+|++++++ +||+|||+.++|+++. ...++++.
T Consensus 99 ~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~---------------~~~i~~~~ 163 (290)
T PRK05917 99 YIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE---------------KTLVSKED 163 (290)
T ss_pred EEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh---------------ccCCCHHH
Confidence 4899999999999999999999999999999999999999 9999999999998862 12357777
Q ss_pred HHHHHHHcCCcHH
Q 042716 80 AEKIADNSKNNLR 92 (137)
Q Consensus 80 l~~i~~~~~gd~R 92 (137)
+..++..++|+++
T Consensus 164 ~~~l~~~~~g~~~ 176 (290)
T PRK05917 164 IAYLIGYAQGKES 176 (290)
T ss_pred HHHHHHHhCCChh
Confidence 7777777888774
No 68
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.60 E-value=1.8e-14 Score=121.09 Aligned_cols=131 Identities=18% Similarity=0.301 Sum_probs=108.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHh--c----cC---------------CceEEEEeCCCCC--chhhhhcceeeEecCCCH
Q 042716 1 IILCEADKLSTDALLYMRWLLER--Y----KG---------------LNKVFFCCSDVSK--LQPIKSLCTVIQLLPPSK 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~--~----~~---------------~~~~Il~~n~~~~--i~~l~SRc~~i~~~~~~~ 57 (137)
+||||||+=...+.+.++++++. . ++ .-|+|++||+.+. +++||--|.++.|.+|++
T Consensus 391 LViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 391 LVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred EEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCCh
Confidence 58999999999999999999982 1 11 2469999999865 699999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCc----ccCccc-----cCCcHHHHHHHHHH
Q 042716 58 QEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPF----VEGQVI-----LTGWEDDITNIATK 128 (137)
Q Consensus 58 ~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~~~----~~~~~~-----~~~~~~~~~~i~~~ 128 (137)
..++++|+.||.+||+..+..++..+++.+++|+|.++|+||.+...+... +...+- .++..+.++.+++.
T Consensus 471 s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~slf~~w~e 550 (877)
T KOG1969|consen 471 SRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKNVGAKSNSDSLFSWWKE 550 (877)
T ss_pred hHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhhhcccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999999877653 222211 23345556777777
Q ss_pred HHh
Q 042716 129 IIE 131 (137)
Q Consensus 129 i~~ 131 (137)
|++
T Consensus 551 i~q 553 (877)
T KOG1969|consen 551 IFQ 553 (877)
T ss_pred HHH
Confidence 765
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.59 E-value=1e-14 Score=117.76 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=89.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC--CCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc--CC-C
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV--SKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE--GI-Q 74 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~--~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e--gi-~ 74 (137)
+||||+|.++...|++|++.+|+ +...+|.+++.. ..+ ++|+|||.++.|.+++.+++..++..++... |+ .
T Consensus 96 L~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~ 173 (413)
T PRK13342 96 LFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVE 173 (413)
T ss_pred EEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCC
Confidence 58999999999999999999994 444455554433 357 9999999999999999999999999987653 55 8
Q ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCccc
Q 042716 75 LPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVE 110 (137)
Q Consensus 75 i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~ 110 (137)
++++++..+++.++||+|.++|.|+.+...+..++.
T Consensus 174 i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~ 209 (413)
T PRK13342 174 LDDEALDALARLANGDARRALNLLELAALGVDSITL 209 (413)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCH
Confidence 999999999999999999999999988654333433
No 70
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=5.1e-15 Score=111.36 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=79.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|+++|.|+.+|+|+|+|++|||++++.|||+|+++..+ +||+|||+.++|+.|.......+....+.-. .+...
T Consensus 93 iII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~~~p~---~~~~~ 169 (263)
T PRK06581 93 AIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQFIQPI---ADNKT 169 (263)
T ss_pred EEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHHhcccc---cccHH
Confidence 5899999999999999999999999999999999999999 9999999999999999977766654432222 23445
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
++.|.+....|-..++...+.+.
T Consensus 170 l~~i~~~~~~d~~~w~~~~~~~~ 192 (263)
T PRK06581 170 LDFINRFTTKDRELWLDFIDNLL 192 (263)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Confidence 77777777767666666655443
No 71
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.57 E-value=1.7e-14 Score=108.51 Aligned_cols=102 Identities=14% Similarity=0.216 Sum_probs=87.2
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhc--cCCceEEEEeCCCCC----c-hhhhhcc---eeeEecCCCHHHHHHHHHHHH
Q 042716 1 IILCEADKLST--DALLYMRWLLERY--KGLNKVFFCCSDVSK----L-QPIKSLC---TVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~--~~~~~~Il~~n~~~~----i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~ 68 (137)
++|||+|.+.. ..+..|+.+++.. .+++.+|++++.++. + ++|+||| .++.+.+|++++...+|++.+
T Consensus 101 liiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 101 VCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred EEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 48999999964 4466666666654 334579999987743 5 9999999 899999999999999999989
Q ss_pred HHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 69 EQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 69 ~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
..+|+.++++++.+|+++++||+|.+++.|+.+.
T Consensus 181 ~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 181 RLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred HHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 72
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.56 E-value=1.5e-14 Score=123.53 Aligned_cols=101 Identities=11% Similarity=0.196 Sum_probs=87.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC--CCc-hhhhhcceeeEecCCCHHHHHHHHHHHHH-------H
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV--SKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE-------Q 70 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~--~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~-------~ 70 (137)
+||||+|.|+...|++|++.+|+ +...+|.+++.. ..+ ++|+|||.+|.|++++.+++..++.+++. +
T Consensus 113 L~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~ 190 (725)
T PRK13341 113 LFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGD 190 (725)
T ss_pred EEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 58999999999999999999983 333344444333 357 99999999999999999999999999887 5
Q ss_pred cCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 71 EGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 71 egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
+++.++++++..|++.++||+|.++|.|+.+..
T Consensus 191 ~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 191 RKVDLEPEAEKHLVDVANGDARSLLNALELAVE 223 (725)
T ss_pred cccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999998764
No 73
>PRK08727 hypothetical protein; Validated
Probab=99.56 E-value=4.3e-14 Score=106.24 Aligned_cols=102 Identities=12% Similarity=0.173 Sum_probs=89.9
Q ss_pred CcccccCcCC--HHHHHHHHHHHHhccC-CceEEEEeCCCCC----c-hhhhhc---ceeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLS--TDALLYMRWLLERYKG-LNKVFFCCSDVSK----L-QPIKSL---CTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~--~~~~~~L~~~le~~~~-~~~~Il~~n~~~~----i-~~l~SR---c~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+. .+.+..|+.+++.... +.++|+++|.++. + ++|+|| |.++.|++|++++...+|+..|.
T Consensus 97 LiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 97 VALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred EEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 5899999995 4557788888886433 4569999997754 5 999999 89999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.+|+.++++++.+|+++++||+|.++++|+.+.
T Consensus 177 ~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 177 RRGLALDEAAIDWLLTHGERELAGLVALLDRLD 209 (233)
T ss_pred HcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999775
No 74
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.55 E-value=1.5e-14 Score=107.84 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=82.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccC------------------CceEEEEeCCCCCc-hhhhhccee-eEecCCCHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKG------------------LNKVFFCCSDVSKL-QPIKSLCTV-IQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~------------------~~~~Il~~n~~~~i-~~l~SRc~~-i~~~~~~~~~i 60 (137)
+||||+|+|++..|+.|+..||.+.- ...+|-+|+....+ +||++|+.+ .++..++.+++
T Consensus 105 LFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el 184 (233)
T PF05496_consen 105 LFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEEL 184 (233)
T ss_dssp EEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHH
T ss_pred EEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHH
Confidence 58999999999999999999997631 23366667777889 999999966 58999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.+++++.+...|+++++++...|+.+|.|++|-|.++|+.+.
T Consensus 185 ~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 185 AKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp HHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998875
No 75
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.52 E-value=1.1e-13 Score=108.48 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=91.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc------------------CCceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK------------------GLNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~------------------~~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i 60 (137)
+||||+|.++...++.|+..+|.+. +...+|.+||....+ ++|+||| ..+.|.+++.+++
T Consensus 106 l~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~ 185 (328)
T PRK00080 106 LFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEEL 185 (328)
T ss_pred EEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHH
Confidence 5899999999999999999999753 124578888888889 9999998 6799999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
..++...+.+.++.++++++..|+++++|++|.+.+.|+...
T Consensus 186 ~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 186 EKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999998754
No 76
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.50 E-value=1.7e-13 Score=106.06 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=91.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc------------------CCceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK------------------GLNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~------------------~~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i 60 (137)
++|||+|.+.+..++.|+..+++.. ....+|.++|.+.++ ++++||| ..+.|.+++.+++
T Consensus 85 l~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~ 164 (305)
T TIGR00635 85 LFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEEL 164 (305)
T ss_pred EEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHH
Confidence 5899999999999999999988544 124577788888889 9999999 5689999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.++++..+..+++.++++++..+++.+.|++|.+.++++.+.
T Consensus 165 ~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~ 206 (305)
T TIGR00635 165 AEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVR 206 (305)
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 77
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.49 E-value=2.6e-13 Score=112.80 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=89.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc----------------------------cCCceEEEEeC-CCCCc-hhhhhcceee
Q 042716 1 IILCEADKLSTDALLYMRWLLERY----------------------------KGLNKVFFCCS-DVSKL-QPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~----------------------------~~~~~~Il~~n-~~~~i-~~l~SRc~~i 50 (137)
++|||+|.|+...|+.|++++|+. +.++++|++|+ ++..+ ++++|||..+
T Consensus 179 L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I 258 (531)
T TIGR02902 179 LFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEI 258 (531)
T ss_pred EEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhee
Confidence 589999999999999999999862 12346666655 56678 9999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 51 QLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 51 ~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
.|++++.+++..++++.++++|+.+++++++.+..++. |.|.+.|+++.+..
T Consensus 259 ~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 259 FFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAG 310 (531)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887764 99999999998764
No 78
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.47 E-value=2.2e-13 Score=107.86 Aligned_cols=100 Identities=17% Similarity=0.315 Sum_probs=80.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCce-EEEEeC------------CCCCc-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNK-VFFCCS------------DVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~-~Il~~n------------~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
+||||+|.|+-++...|.+.+| +.-.| +||+|| .++.+ .+|++||.+++..|++.+++.++|.-
T Consensus 282 LFIDEvHmLDiEcFsfLnralE--s~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~i 359 (398)
T PF06068_consen 282 LFIDEVHMLDIECFSFLNRALE--SELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKI 359 (398)
T ss_dssp EEEESGGGSBHHHHHHHHHHHT--STT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHH
T ss_pred EEecchhhccHHHHHHHHHHhc--CCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHh
Confidence 5899999999999999999999 66777 777777 33568 89999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHH
Q 042716 67 IAEQEGIQLPHQLAEKIADN-SKNNLRQAIRSFEASR 102 (137)
Q Consensus 67 i~~~egi~i~~~~l~~i~~~-~~gd~R~aln~L~~~~ 102 (137)
.|+.|+++++++++..+.+. .+.++|+|+++|..++
T Consensus 360 R~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 360 RAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred hhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 99999999999999999986 6789999999997654
No 79
>PRK06893 DNA replication initiation factor; Validated
Probab=99.43 E-value=1.1e-12 Score=98.25 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=86.0
Q ss_pred CcccccCcCC--HHHHHHHHHHHHhccC-Cce-EEEEeCCCCC----c-hhhhhcce---eeEecCCCHHHHHHHHHHHH
Q 042716 1 IILCEADKLS--TDALLYMRWLLERYKG-LNK-VFFCCSDVSK----L-QPIKSLCT---VIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 1 iiiDEid~l~--~~~~~~L~~~le~~~~-~~~-~Il~~n~~~~----i-~~l~SRc~---~i~~~~~~~~~i~~~l~~i~ 68 (137)
++|||+|.+. ...+..|+.+++.... +.+ ++++++..+. . ++|+||+. ++++++|++++...++++.+
T Consensus 95 LilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a 174 (229)
T PRK06893 95 VCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA 174 (229)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH
Confidence 5899999985 3346678888876543 333 4666776543 4 89999986 99999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 69 EQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 69 ~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
..+|+.++++++.+|+++++||+|.+++.|+.+.
T Consensus 175 ~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 175 YQRGIELSDEVANFLLKRLDRDMHTLFDALDLLD 208 (229)
T ss_pred HHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 80
>PRK05642 DNA replication initiation factor; Validated
Probab=99.42 E-value=1.6e-12 Score=97.77 Aligned_cols=102 Identities=17% Similarity=0.240 Sum_probs=88.4
Q ss_pred CcccccCcCC--HHHHHHHHHHHHhccC-CceEEEEeCCCCC----c-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLS--TDALLYMRWLLERYKG-LNKVFFCCSDVSK----L-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~--~~~~~~L~~~le~~~~-~~~~Il~~n~~~~----i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+. +..+..|+.+++.... +.+++++|+..+. . ++|+||+ .++.+++|++++...+++..+.
T Consensus 101 LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 101 VCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred EEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 4799999885 3457889999987554 5678888886542 4 9999999 8999999999999999998888
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
..|+.++++++.+++++++||+|.+.+.|+.+.
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTRSMSALFDLLERLD 213 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999875
No 81
>PRK06620 hypothetical protein; Validated
Probab=99.42 E-value=2.9e-12 Score=95.31 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=80.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccC-CceEEEEeCCCCC---chhhhhcce---eeEecCCCHHHHHHHHHHHHHHcCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKG-LNKVFFCCSDVSK---LQPIKSLCT---VIQLLPPSKQEIVEVLEFIAEQEGI 73 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~---i~~l~SRc~---~i~~~~~~~~~i~~~l~~i~~~egi 73 (137)
++|||+|.+.. ..|..+++.... +..++++++.++. +++|+||+. ++.+++|+++++..++++.+...|+
T Consensus 89 lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 89 FIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred EEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 57999997743 345555443322 3457777765543 399999987 9999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 74 QLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 74 ~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.++++++.+|+++++||+|.+++.|+.+.
T Consensus 166 ~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 166 TISRQIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 82
>PRK09087 hypothetical protein; Validated
Probab=99.41 E-value=1.3e-12 Score=97.94 Aligned_cols=101 Identities=10% Similarity=0.064 Sum_probs=87.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccC-CceEEEEeCCCCC----c-hhhhhcc---eeeEecCCCHHHHHHHHHHHHHHc
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKG-LNKVFFCCSDVSK----L-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~----i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
++|||+|.+. ..+.+|+.+++.... ++.++++|+..+. . ++|+||+ .++.+++|+.++...+|++.++.+
T Consensus 91 l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 91 VLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred EEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 5789999884 357788888887655 5678888886643 4 8999999 899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 72 GIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 72 gi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
|+.++++++++|++++.||+|.++..|..+.
T Consensus 170 ~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~ 200 (226)
T PRK09087 170 QLYVDPHVVYYLVSRMERSLFAAQTIVDRLD 200 (226)
T ss_pred CCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999998666554
No 83
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.40 E-value=8e-13 Score=104.64 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=84.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCC--Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHH----Hc--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVS--KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE----QE-- 71 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~--~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~----~e-- 71 (137)
+||||+|++.+..|..++..+| .+...+|-+|++.+ .+ .+|.|||.+|-+.+++.+.+..+|.+... .|
T Consensus 226 lFiDEiHRFNksQQD~fLP~VE--~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~ 303 (554)
T KOG2028|consen 226 LFIDEIHRFNKSQQDTFLPHVE--NGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERP 303 (554)
T ss_pred EEeHHhhhhhhhhhhcccceec--cCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhcccccc
Confidence 5899999999999999999999 55666777666554 47 99999999999999999999999987432 11
Q ss_pred -------CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 72 -------GIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 72 -------gi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.+.+++..+++++..+.||.|.++|.||+..
T Consensus 304 ~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~ 341 (554)
T KOG2028|consen 304 TDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSL 341 (554)
T ss_pred CCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1246788999999999999999999999873
No 84
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.38 E-value=4.4e-12 Score=94.43 Aligned_cols=102 Identities=14% Similarity=0.275 Sum_probs=88.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCce--EEEEeCCCC---Cc-hhhhhcc---eeeEecCCCHHHHHHHHHHHHHHc
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNK--VFFCCSDVS---KL-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~--~Il~~n~~~---~i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
++|||+|.++...+..|+.+++....+.. ++++++..+ .+ ++|+||+ ..+.+++|+.++....+...+.++
T Consensus 94 liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~ 173 (227)
T PRK08903 94 YAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAER 173 (227)
T ss_pred EEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999987554433 555555443 36 8999996 799999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 72 GIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 72 gi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
|+.++++++.++++++.||+|.+.+.|+.+.
T Consensus 174 ~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 174 GLQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred CCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 85
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.38 E-value=1.4e-12 Score=100.78 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=68.0
Q ss_pred cCCceEEEEeCCCC--Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCcHHHHH
Q 042716 25 KGLNKVFFCCSDVS--KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE------GIQLPHQLAEKIADNSKNNLRQAI 95 (137)
Q Consensus 25 ~~~~~~Il~~n~~~--~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e------gi~i~~~~l~~i~~~~~gd~R~al 95 (137)
.+...+|-+|++.+ .+ ++|+|||++|.|++++.+++...|++....+ .+.++++++..|+..++||.|.++
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aL 85 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKIL 85 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHH
Confidence 45566777776554 47 9999999999999999999999999988752 368999999999999999999999
Q ss_pred HHHHHHHh
Q 042716 96 RSFEASRQ 103 (137)
Q Consensus 96 n~L~~~~~ 103 (137)
|+|+.+..
T Consensus 86 N~LE~a~~ 93 (300)
T PRK14700 86 NLLERMFL 93 (300)
T ss_pred HHHHHHHh
Confidence 99999653
No 86
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.36 E-value=9.8e-12 Score=95.70 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=105.9
Q ss_pred CcccccCcCC-HHHHHHHHHHHHhccCCceEEEEeCCCCC---c-hhhh--hcceeeEecCCCHHHHHHHHHHHHHHcCC
Q 042716 1 IILCEADKLS-TDALLYMRWLLERYKGLNKVFFCCSDVSK---L-QPIK--SLCTVIQLLPPSKQEIVEVLEFIAEQEGI 73 (137)
Q Consensus 1 iiiDEid~l~-~~~~~~L~~~le~~~~~~~~Il~~n~~~~---i-~~l~--SRc~~i~~~~~~~~~i~~~l~~i~~~egi 73 (137)
|+|++++.+. ....++|.+.+++++.++.+|++++...+ + +.+. ++|.++.|.+++..++..++...++++|+
T Consensus 50 iii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~ 129 (302)
T TIGR01128 50 VELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGL 129 (302)
T ss_pred EEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5789999986 45689999999999999999998886543 2 3333 59999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHHHhc--CCCcccCccc-c--CCcHHHHHHHHHHHHhcC
Q 042716 74 QLPHQLAEKIADNSKNNLRQAIRSFEASRQM--NYPFVEGQVI-L--TGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 74 ~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~--~~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~ 133 (137)
.+++++++.+++.++||++.+.|.++.+... +.+++...+. . ...+..++++++.++.++
T Consensus 130 ~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~ 194 (302)
T TIGR01128 130 RIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGK 194 (302)
T ss_pred CCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCC
Confidence 9999999999999999999999999988764 2345544443 1 123344666777666554
No 87
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=2.4e-12 Score=101.24 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=62.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
++||++|+|+.+++++|++++|+|+.++.||++|.++..+ ++++|||+.++|.+|+.+++..+|..
T Consensus 117 ~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 117 ILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred EEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 4789999999999999999999999889999999999999 99999999999999999999999964
No 88
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.34 E-value=1.2e-11 Score=94.14 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=86.3
Q ss_pred CcccccCcCC--------HHHHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcc-eeeEecCCCHHHHHHHHH
Q 042716 1 IILCEADKLS--------TDALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLC-TVIQLLPPSKQEIVEVLE 65 (137)
Q Consensus 1 iiiDEid~l~--------~~~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc-~~i~~~~~~~~~i~~~l~ 65 (137)
+||||+|.|. .++++.|++.||+.+.+..+|++++... .+ ++|+||| ..+.|++++.+++..+++
T Consensus 109 L~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~ 188 (261)
T TIGR02881 109 LFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAE 188 (261)
T ss_pred EEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHH
Confidence 5899999986 4578899999998766666777664332 36 8999999 679999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH----------cCCcHHHHHHHHHHHHh
Q 042716 66 FIAEQEGIQLPHQLAEKIADN----------SKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 66 ~i~~~egi~i~~~~l~~i~~~----------~~gd~R~aln~L~~~~~ 103 (137)
+.+...++.++++++..+.+. +.||.|.+.|+++.+..
T Consensus 189 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 189 RMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred HHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 999999999999999888653 36999999999998664
No 89
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.34 E-value=6.7e-12 Score=98.92 Aligned_cols=99 Identities=20% Similarity=0.343 Sum_probs=89.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCce-EEEEeC------------CCCCc-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNK-VFFCCS------------DVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~-~Il~~n------------~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
+||||+|.|.-++...|.+.|| +.-+| +||+|| .|+.| .+|..|..+++-.|++.+++..+++.
T Consensus 295 LFIDEvHmLDIE~FsFlnrAlE--se~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~i 372 (450)
T COG1224 295 LFIDEVHMLDIECFSFLNRALE--SELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRI 372 (450)
T ss_pred EEEechhhhhHHHHHHHHHHhh--cccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHH
Confidence 5899999999999999999999 66677 666676 34568 89999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHH
Q 042716 67 IAEQEGIQLPHQLAEKIADN-SKNNLRQAIRSFEAS 101 (137)
Q Consensus 67 i~~~egi~i~~~~l~~i~~~-~~gd~R~aln~L~~~ 101 (137)
.|+.|++.++++++++++.. ...++|+++++|.-+
T Consensus 373 Ra~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa 408 (450)
T COG1224 373 RAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPA 408 (450)
T ss_pred hhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHH
Confidence 99999999999999999997 568999999999833
No 90
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.33 E-value=2.2e-11 Score=90.89 Aligned_cols=103 Identities=18% Similarity=0.310 Sum_probs=83.3
Q ss_pred CcccccCcCCHHH--HHHHHHHHHhcc-CCceEEEEeCCCCC----c-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDA--LLYMRWLLERYK-GLNKVFFCCSDVSK----L-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~~~--~~~L~~~le~~~-~~~~~Il~~n~~~~----i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++||++|.+.... |..|..+++... .+.++|++++.++. + +.|+||+ .++.+.+|++++...+|++.+.
T Consensus 101 L~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 101 LIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp EEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred EEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 5899999997665 899999999864 34579999976643 6 8999995 6899999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
..|+.++++++.+++++..+|+|.+...|..+..
T Consensus 181 ~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFRRDVRELEGALNRLDA 214 (219)
T ss_dssp HTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987764
No 91
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=1.4e-11 Score=104.03 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=79.1
Q ss_pred CcccccCcCCHHHHHHHHHHHH-hc--cCCceEEEEeCCCC--------------C-c-hhhhh--cceeeEecCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLE-RY--KGLNKVFFCCSDVS--------------K-L-QPIKS--LCTVIQLLPPSKQE 59 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le-~~--~~~~~~Il~~n~~~--------------~-i-~~l~S--Rc~~i~~~~~~~~~ 59 (137)
|+|||++.+......++..++. .+ .+.+++|+++++.+ . + +.|+| ||.+|.|+|++..+
T Consensus 199 ILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~ 278 (637)
T TIGR00602 199 ILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTI 278 (637)
T ss_pred EEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHH
Confidence 5899997765433333333333 11 45678888887431 1 4 68998 56779999999999
Q ss_pred HHHHHHHHHHHcCCC------C-CHHHHHHHHHHcCCcHHHHHHHHHHHHhcC
Q 042716 60 IVEVLEFIAEQEGIQ------L-PHQLAEKIADNSKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 60 i~~~l~~i~~~egi~------i-~~~~l~~i~~~~~gd~R~aln~L~~~~~~~ 105 (137)
+.++|..|+++|+.. + +++++..|+..+.||+|.|||+||.+...+
T Consensus 279 l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 279 MKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred HHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcC
Confidence 999999999988643 2 467899999999999999999999986544
No 92
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.29 E-value=2.6e-11 Score=93.14 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=91.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc------------------CCceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK------------------GLNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~------------------~~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i 60 (137)
+||||+|+|++...+.|+..||.+. +...+|-+|+....+ .|||+|+ .+.++..++.+++
T Consensus 107 LFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL 186 (332)
T COG2255 107 LFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEEL 186 (332)
T ss_pred EEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHH
Confidence 5899999999999999999999884 122355566777788 9999998 6789999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
..++.+-+..-++++++++...|+++|.|.+|-|.++|....
T Consensus 187 ~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 187 EEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998765
No 93
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.24 E-value=1.4e-10 Score=94.67 Aligned_cols=102 Identities=19% Similarity=0.284 Sum_probs=85.4
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhcc-CCceEEEEeCCCC----Cc-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLST--DALLYMRWLLERYK-GLNKVFFCCSDVS----KL-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~~-~~~~~Il~~n~~~----~i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+.. ..|..|+.+++... .+..+|++|+.++ .+ +.|+||+ .++.|.+|+.++...+|+..++
T Consensus 215 LiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 215 LLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 58999999854 34777888776643 3456888888764 37 8999998 5899999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
..|+.++++++.+|+.++.||+|.+...|..+.
T Consensus 295 ~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~ 327 (450)
T PRK00149 295 EEGIDLPDEVLEFIAKNITSNVRELEGALNRLI 327 (450)
T ss_pred HcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999777776654
No 94
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.23 E-value=8.8e-11 Score=86.90 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=87.1
Q ss_pred CcccccCcCCHHH--HHHHHHHHHhcc-CCceEEEEeCCCC----Cc-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDA--LLYMRWLLERYK-GLNKVFFCCSDVS----KL-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~~~--~~~L~~~le~~~-~~~~~Il~~n~~~----~i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+.... ++.|+.+++... .+.++|++|+... .. +.|+||+ ..+++++++.++....+...+.
T Consensus 94 LvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 94 VCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 5799999998744 888988887643 3457888888653 23 7889996 5899999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
+.|+.++++++..++..+.||+|.+.+.++.+..
T Consensus 174 ~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 174 RRGLQLPDEVADYLLRHGSRDMGSLMALLDALDR 207 (226)
T ss_pred HcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887653
No 95
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.22 E-value=9.2e-11 Score=95.77 Aligned_cols=102 Identities=12% Similarity=0.143 Sum_probs=89.2
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhc-cCCceEEEEeCCCC----Cc-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLST--DALLYMRWLLERY-KGLNKVFFCCSDVS----KL-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~-~~~~~~Il~~n~~~----~i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+.. ..|+.|+.+++.. ..+.++|++|+.++ .+ ++|+||| .++.+.+|+.++...+|++.++
T Consensus 206 LiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 206 LFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred EEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 58999999964 4578888887753 34567999998763 47 8999999 7999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
..|+.++++++.+++.+..+|+|.+.+.|..+.
T Consensus 286 ~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~ 318 (445)
T PRK12422 286 ALSIRIEETALDFLIEALSSNVKSLLHALTLLA 318 (445)
T ss_pred HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999884
No 96
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.20 E-value=3.2e-10 Score=91.32 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=85.1
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhc-cCCceEEEEeCCCC----Cc-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLST--DALLYMRWLLERY-KGLNKVFFCCSDVS----KL-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~-~~~~~~Il~~n~~~----~i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+.. ..|..|+.+++.. ..+.++|++++.++ .+ +.|+||+ .++.|++|+.++...+|+..++
T Consensus 203 LiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 203 LLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 58999999854 3577788888764 34567899988764 36 8899998 5799999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
..|+.++++++.+|+.+..||+|.+...|..+.
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~ 315 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRSNVRELEGALNRLL 315 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999999999999999998666655443
No 97
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.20 E-value=1.9e-10 Score=97.19 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=84.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc--------------------------CCceEEEEe---CCCCCc-hhhhhcceee
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK--------------------------GLNKVFFCC---SDVSKL-QPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~--------------------------~~~~~Il~~---n~~~~i-~~l~SRc~~i 50 (137)
+||||+|.|+...|+.|++++++.. ..+.|++++ +++..+ ++|+|||..+
T Consensus 269 L~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i 348 (615)
T TIGR02903 269 LFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEV 348 (615)
T ss_pred EEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEE
Confidence 5899999999999999999998632 122355553 345568 9999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 51 QLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 51 ~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.|.+++.+++..++.+.+.+.++.++++++..|..++. +.|+++|.|+.+.
T Consensus 349 ~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~ 399 (615)
T TIGR02903 349 FFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI-EGRKAVNILADVY 399 (615)
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888764 7899999998664
No 98
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.19 E-value=7.8e-11 Score=101.85 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=85.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc---CCceEEEEeCCC---CCc-hhhhhcce--eeEecCCCHHHHHHHHHHHHHHc
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK---GLNKVFFCCSDV---SKL-QPIKSLCT--VIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~---~~~~~Il~~n~~---~~i-~~l~SRc~--~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
|+|||+|.|....|..|+.+++-+. ....+|.++|+. ..+ +.++|||. .+.|+|++.+++..+|...++..
T Consensus 873 IILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A 952 (1164)
T PTZ00112 873 LIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC 952 (1164)
T ss_pred EEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 5899999998878888888877543 223466777764 457 99999985 49999999999999999988865
Q ss_pred CCCCCHHHHHHHHH---HcCCcHHHHHHHHHHHHhc
Q 042716 72 GIQLPHQLAEKIAD---NSKNNLRQAIRSFEASRQM 104 (137)
Q Consensus 72 gi~i~~~~l~~i~~---~~~gd~R~aln~L~~~~~~ 104 (137)
.-.+++++++.++. ...||+|.|+++|+.+...
T Consensus 953 ~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 953 KEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred CCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 45689999999998 6789999999999988753
No 99
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=4.1e-10 Score=91.85 Aligned_cols=102 Identities=16% Similarity=0.233 Sum_probs=85.3
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhccC-CceEEEEeCCCC----Cc-hhhhhcce---eeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLST--DALLYMRWLLERYKG-LNKVFFCCSDVS----KL-QPIKSLCT---VIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~~~-~~~~Il~~n~~~----~i-~~l~SRc~---~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+.. ..|..|+.+++.... +..+|++|+..+ .+ +.++||+. ++.|.+|+.+....+|++.++
T Consensus 198 LlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 198 LLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred EEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 58999998843 346778777776433 456888886553 36 89999986 999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.+|+.++++++.+|++++.||+|.+...|..+.
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~ 310 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDDNLRRLRGAIIKLL 310 (440)
T ss_pred hcCCCCCHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 999999999999999999999999988887664
No 100
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=1.8e-10 Score=94.16 Aligned_cols=102 Identities=10% Similarity=0.163 Sum_probs=88.7
Q ss_pred CcccccCcCC--HHHHHHHHHHHHhccC-CceEEEEeCCCC----Cc-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLS--TDALLYMRWLLERYKG-LNKVFFCCSDVS----KL-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~--~~~~~~L~~~le~~~~-~~~~Il~~n~~~----~i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+. ...++.|+.+++.... +..+|++++.++ .+ +.|+||+ .++.+++|+.++...+|++.++
T Consensus 210 LiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 210 LIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHH
Confidence 5899999997 5678889998887543 346899988775 36 8999997 5999999999999999999999
Q ss_pred HcCC--CCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 70 QEGI--QLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 70 ~egi--~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
..|+ .++++++.+|+++++||+|.+.+.|..+.
T Consensus 290 ~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 290 NQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLN 324 (450)
T ss_pred hcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 9886 69999999999999999999999998775
No 101
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.16 E-value=2.8e-10 Score=88.45 Aligned_cols=101 Identities=14% Similarity=0.281 Sum_probs=88.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEE-EEeC------------CCCCc-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVF-FCCS------------DVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~I-l~~n------------~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
+||||+|.|.-++...|.+.+| ...+|++ +++| +++.+ .++..|..++.-.|++.+++.++|+-
T Consensus 292 LFIDEvHMLDIEcFsFlNrAlE--~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~i 369 (454)
T KOG2680|consen 292 LFIDEVHMLDIECFSFLNRALE--NDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILRI 369 (454)
T ss_pred EEEeeehhhhhHHHHHHHHHhh--hccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHHh
Confidence 5899999999999999999999 6677754 4454 33568 89999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHh
Q 042716 67 IAEQEGIQLPHQLAEKIADN-SKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 67 i~~~egi~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~ 103 (137)
.|..|++.++++++..+... .+-++|++++++-...+
T Consensus 370 Rc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~ 407 (454)
T KOG2680|consen 370 RCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASL 407 (454)
T ss_pred hhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999886 56789999999976654
No 102
>CHL00181 cbbX CbbX; Provisional
Probab=99.16 E-value=2.9e-10 Score=88.03 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=86.6
Q ss_pred CcccccCcC---------CHHHHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcce-eeEecCCCHHHHHHHH
Q 042716 1 IILCEADKL---------STDALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLCT-VIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l---------~~~~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc~-~i~~~~~~~~~i~~~l 64 (137)
+||||+|.| +.++++.|+..||....++.+|++++... .+ |+|+|||. .+.|++++.+++..++
T Consensus 126 LfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~ 205 (287)
T CHL00181 126 LFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIA 205 (287)
T ss_pred EEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHH
Confidence 589999987 56679999999998777777777765331 35 89999985 7999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHHHh
Q 042716 65 EFIAEQEGIQLPHQLAEKIADN--------SKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 65 ~~i~~~egi~i~~~~l~~i~~~--------~~gd~R~aln~L~~~~~ 103 (137)
...+++++..+++++...+..+ ..|+.|.+.|+++.+..
T Consensus 206 ~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 206 KIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 9999999999999988777764 34889999999997765
No 103
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.12 E-value=4.1e-10 Score=87.35 Aligned_cols=99 Identities=20% Similarity=0.379 Sum_probs=87.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCce-EEEEeC-------------CCCCc-hhhhhcceeeEecCCCHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNK-VFFCCS-------------DVSKL-QPIKSLCTVIQLLPPSKQEIVEVLE 65 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~-~Il~~n-------------~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~ 65 (137)
+||||+|.|.-++...|.+.+| ++-.| +||++| .++.+ ++|..|..+++-.+++++++..+++
T Consensus 300 LFIDEVhMLDiEcFTyL~kalE--S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~ 377 (456)
T KOG1942|consen 300 LFIDEVHMLDIECFTYLHKALE--SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIK 377 (456)
T ss_pred eEeeehhhhhhHHHHHHHHHhc--CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHH
Confidence 5899999999999999999999 44445 677776 33568 8999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHH
Q 042716 66 FIAEQEGIQLPHQLAEKIADN-SKNNLRQAIRSFEAS 101 (137)
Q Consensus 66 ~i~~~egi~i~~~~l~~i~~~-~~gd~R~aln~L~~~ 101 (137)
..++.||+.++++++..+... ...++|+++.+|--+
T Consensus 378 ~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~ 414 (456)
T KOG1942|consen 378 IRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPA 414 (456)
T ss_pred HHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHH
Confidence 999999999999999999985 678999999998733
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.10 E-value=8.3e-10 Score=85.36 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=87.4
Q ss_pred CcccccCcC---------CHHHHHHHHHHHHhccCCceEEEEeCCC-----CCc-hhhhhcc-eeeEecCCCHHHHHHHH
Q 042716 1 IILCEADKL---------STDALLYMRWLLERYKGLNKVFFCCSDV-----SKL-QPIKSLC-TVIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l---------~~~~~~~L~~~le~~~~~~~~Il~~n~~-----~~i-~~l~SRc-~~i~~~~~~~~~i~~~l 64 (137)
+||||+|.| +.+.++.|+..||....+..+|++++.. ..+ ++++||| ..+.|++++.+++...+
T Consensus 125 L~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~ 204 (284)
T TIGR02880 125 LFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIA 204 (284)
T ss_pred EEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHH
Confidence 589999988 3556899999999877777777776543 236 8999999 57999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHHHh
Q 042716 65 EFIAEQEGIQLPHQLAEKIADN--------SKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 65 ~~i~~~egi~i~~~~l~~i~~~--------~~gd~R~aln~L~~~~~ 103 (137)
...+++.+..+++++...+..+ ..||.|.+.|+++.+..
T Consensus 205 ~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 205 GLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 9999999999999999888775 45999999999998775
No 105
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.08 E-value=2e-09 Score=84.21 Aligned_cols=133 Identities=14% Similarity=0.184 Sum_probs=104.9
Q ss_pred CcccccCc---CCHHHHHHHHHHHHhccCCceEEEEeCC-CC---Cc-hhhhhcceeeEecCC---CHHHHHHHHHHHHH
Q 042716 1 IILCEADK---LSTDALLYMRWLLERYKGLNKVFFCCSD-VS---KL-QPIKSLCTVIQLLPP---SKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~---l~~~~~~~L~~~le~~~~~~~~Il~~n~-~~---~i-~~l~SRc~~i~~~~~---~~~~i~~~l~~i~~ 69 (137)
|++++++. .+++..++|...++.+++++.+|+++.. .. +. +.+...+.+..|.++ +.+++.+|+...++
T Consensus 65 Vvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~ 144 (326)
T PRK07452 65 VWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQ 144 (326)
T ss_pred EEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHH
Confidence 35666654 3567788999999999889988887543 32 36 778888888888766 45779999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhc----CCCcccCccc--cCCcHHHHHHHHHHHHhcC
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQM----NYPFVEGQVI--LTGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~----~~~~~~~~~~--~~~~~~~~~~i~~~i~~~~ 133 (137)
++|+.+++++++.++...++|++.+.|-|+.+..- +.+++.+.+- +.+.+..++++++.++.++
T Consensus 145 ~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~~~~if~l~dai~~~~ 214 (326)
T PRK07452 145 ELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNTTQNSLQLADALLQGN 214 (326)
T ss_pred HcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccCcCcHHHHHHHHHCCC
Confidence 99999999999999999999999999999998764 2247766664 2344556778888888765
No 106
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.06 E-value=5.8e-10 Score=96.85 Aligned_cols=101 Identities=21% Similarity=0.322 Sum_probs=92.0
Q ss_pred CcccccCcCCH---HHHHHHHHHHHhccCCceEEEEeCCCCCc--hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCC
Q 042716 1 IILCEADKLST---DALLYMRWLLERYKGLNKVFFCCSDVSKL--QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQL 75 (137)
Q Consensus 1 iiiDEid~l~~---~~~~~L~~~le~~~~~~~~Il~~n~~~~i--~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i 75 (137)
|++||+|.|.. +.+..|-.+++ ....++|++||+.... +++.+-|..++|+.|+...+..++..+|..|++.+
T Consensus 432 il~devD~~~~~dRg~v~~l~~l~~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki 509 (871)
T KOG1968|consen 432 ILMDEVDGMFGEDRGGVSKLSSLCK--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKI 509 (871)
T ss_pred EEEeccccccchhhhhHHHHHHHHH--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceec
Confidence 58999999987 45777888888 5678999999999764 78888899999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 76 PHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 76 ~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
+++.++.+++.++||+|++++.|+++..
T Consensus 510 ~~~~l~~~s~~~~~DiR~~i~~lq~~~~ 537 (871)
T KOG1968|consen 510 SDDVLEEISKLSGGDIRQIIMQLQFWSL 537 (871)
T ss_pred CcHHHHHHHHhcccCHHHHHHHHhhhhc
Confidence 9999999999999999999999999953
No 107
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.04 E-value=2e-09 Score=90.48 Aligned_cols=102 Identities=14% Similarity=0.206 Sum_probs=88.6
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhccC-CceEEEEeCCCC----Cc-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLST--DALLYMRWLLERYKG-LNKVFFCCSDVS----KL-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~~~-~~~~Il~~n~~~----~i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+.. ..+..|+.+++.... +..+|++|+..+ .+ +.|+||+ .++.+.+|+.+....+|+..++
T Consensus 381 LlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 381 LLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred EEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 58999999944 347888899887654 456888888774 36 8999997 6899999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.+|+.++++++++|+.+..+|+|.+...|..+.
T Consensus 461 ~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~ 493 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISRNIRELEGALIRVT 493 (617)
T ss_pred hcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999999999999999999999999998888765
No 108
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.99 E-value=8.7e-09 Score=83.06 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=89.5
Q ss_pred CcccccCcCCHH--HHHHHHHHHHhccCCc-eEEEEeCCCCC----c-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTD--ALLYMRWLLERYKGLN-KVFFCCSDVSK----L-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~~--~~~~L~~~le~~~~~~-~~Il~~n~~~~----i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++||+++.+... .|..++.+.+....+. .++++|..+++ + +.|+||+ .++.+.+|+.+....+|+..++
T Consensus 179 llIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 179 LLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred eeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 479999999665 3888888888765544 68888877764 6 8999996 7999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
..|+.++++++.+++.+..+|+|.+...|..+..
T Consensus 259 ~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~ 292 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDA 292 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 9999999999999999999999999988876654
No 109
>PRK07914 hypothetical protein; Reviewed
Probab=98.95 E-value=1.2e-08 Score=79.86 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=107.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCC---Cc-hhhhhc-ceeeEecCC-CHHHHHHHHHHHHHHcCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVS---KL-QPIKSL-CTVIQLLPP-SKQEIVEVLEFIAEQEGIQ 74 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~---~i-~~l~SR-c~~i~~~~~-~~~~i~~~l~~i~~~egi~ 74 (137)
|+++++..+.+.....|...++.+++.+.+||+++... ++ ++|+.. +.++.+.++ +..++.+|+.+.+++.|+.
T Consensus 68 V~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~ 147 (320)
T PRK07914 68 VVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVK 147 (320)
T ss_pred EEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCC
Confidence 35566666666677889999999988888888765432 25 678776 468999999 9999999999999999999
Q ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHHHHh-cCCCcccCccc--cCCc-HHHHHHHHHHHHhcCC
Q 042716 75 LPHQLAEKIADNSKNNLRQAIRSFEASRQ-MNYPFVEGQVI--LTGW-EDDITNIATKIIEEQS 134 (137)
Q Consensus 75 i~~~~l~~i~~~~~gd~R~aln~L~~~~~-~~~~~~~~~~~--~~~~-~~~~~~i~~~i~~~~~ 134 (137)
+++++++.++...++|+..+-+-|+.+.. .+..++...|- +.+. +..++++++.+++++.
T Consensus 148 i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~ 211 (320)
T PRK07914 148 VDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDV 211 (320)
T ss_pred CCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCH
Confidence 99999999999999999999999998764 34457766664 3343 5578899999887764
No 110
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.93 E-value=5.6e-09 Score=82.49 Aligned_cols=103 Identities=22% Similarity=0.171 Sum_probs=76.1
Q ss_pred CcccccCcCCHHHHH---HHHHH--HHhcc-CCceEEEEeCCCC---Cc-hhhhhcc--eeeEecCCCHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALL---YMRWL--LERYK-GLNKVFFCCSDVS---KL-QPIKSLC--TVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 1 iiiDEid~l~~~~~~---~L~~~--le~~~-~~~~~Il~~n~~~---~i-~~l~SRc--~~i~~~~~~~~~i~~~l~~i~ 68 (137)
++|||+|.|....+. .|+++ ..+.+ .+..+|+++|.+. .+ +.+.||+ ..+.|++++.+++..++...+
T Consensus 133 lvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 133 IVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred EEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 589999999643333 34444 22222 4567899999875 47 8899998 479999999999999999887
Q ss_pred HH--cCCCCCHHHHHHHHH---HcCCcHHHHHHHHHHHHh
Q 042716 69 EQ--EGIQLPHQLAEKIAD---NSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 69 ~~--egi~i~~~~l~~i~~---~~~gd~R~aln~L~~~~~ 103 (137)
+. .+-.++++++..++. .+.||+|.++++|+.+..
T Consensus 213 ~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 213 EKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred HhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 63 233478888777554 457999999999987654
No 111
>PRK05629 hypothetical protein; Validated
Probab=98.91 E-value=2.8e-08 Score=77.77 Aligned_cols=134 Identities=10% Similarity=0.031 Sum_probs=108.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCC---c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK---L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLP 76 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~---i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~ 76 (137)
|++++.+...+.....+...++.+++.+.+|+++....+ + +.++..+.++.+.++...++..|+.+.+++.|+.++
T Consensus 68 V~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~ 147 (318)
T PRK05629 68 IVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPT 147 (318)
T ss_pred EEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 355666666555677889999998888888888864432 5 688889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHhc-CCCcccCccc--cCC-cHHHHHHHHHHHHhcCC
Q 042716 77 HQLAEKIADNSKNNLRQAIRSFEASRQM-NYPFVEGQVI--LTG-WEDDITNIATKIIEEQS 134 (137)
Q Consensus 77 ~~~l~~i~~~~~gd~R~aln~L~~~~~~-~~~~~~~~~~--~~~-~~~~~~~i~~~i~~~~~ 134 (137)
+++++.++..+++|+..+-+-++.+... +.++|...|- +.+ -+..++++++.++.++.
T Consensus 148 ~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~ 209 (318)
T PRK05629 148 PDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQV 209 (318)
T ss_pred HHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCH
Confidence 9999999999999999999999987643 3457766664 233 36678899998887764
No 112
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.89 E-value=1.6e-08 Score=80.80 Aligned_cols=102 Identities=25% Similarity=0.264 Sum_probs=79.6
Q ss_pred CcccccCcCC----HHHHHHHHHHHHhccC-CceEEEEeCCCC---Cc-hhhhhcc--eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLS----TDALLYMRWLLERYKG-LNKVFFCCSDVS---KL-QPIKSLC--TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~----~~~~~~L~~~le~~~~-~~~~Il~~n~~~---~i-~~l~SRc--~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
|+|||+|.+. .+....|++.++..+. +..+|+++|... .+ +.++||+ ..+.|++++.+++..++...++
T Consensus 142 iviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 142 VALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred EEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 5799999996 3345556666655443 455899998774 36 7888987 5789999999999999998876
Q ss_pred Hc--CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHHH
Q 042716 70 QE--GIQLPHQLAEKIADNS---KNNLRQAIRSFEASR 102 (137)
Q Consensus 70 ~e--gi~i~~~~l~~i~~~~---~gd~R~aln~L~~~~ 102 (137)
.. +-.+++++++.+++.+ .||+|.++++|..+.
T Consensus 222 ~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 222 EGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred hhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 43 2358999999998877 899999999998654
No 113
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=98.82 E-value=1.3e-08 Score=72.30 Aligned_cols=101 Identities=20% Similarity=0.242 Sum_probs=77.4
Q ss_pred ccccc----CcCCHHHHHHHHHHHHhccCCceEEEEeC-CCC---Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcC
Q 042716 2 ILCEA----DKLSTDALLYMRWLLERYKGLNKVFFCCS-DVS---KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEG 72 (137)
Q Consensus 2 iiDEi----d~l~~~~~~~L~~~le~~~~~~~~Il~~n-~~~---~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~eg 72 (137)
++.++ +.........|...++.+++++.+|+.++ ... ++ +.+...+.++.+.+|+..++..|++..+++.|
T Consensus 62 ii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g 141 (172)
T PF06144_consen 62 IIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNG 141 (172)
T ss_dssp EEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT
T ss_pred EEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcC
Confidence 45565 55666778999999999999999999988 443 36 88888999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 73 IQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 73 i~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
+.+++++++.+++..++|++.+.+-|+.+.
T Consensus 142 ~~i~~~a~~~L~~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 142 LKIDPDAAQYLIERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp -EE-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 999999999999999999999999998765
No 114
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.79 E-value=8.4e-09 Score=89.34 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=74.6
Q ss_pred CcccccCcCCHHH----HHHHHHHHHhc---------------cCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHH
Q 042716 1 IILCEADKLSTDA----LLYMRWLLERY---------------KGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~----~~~L~~~le~~---------------~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i 60 (137)
|+|||+|.+++.. .++|+.+++.. .+++.||+|||....+ ++|++||.++.|++++.++.
T Consensus 418 illDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~ 497 (775)
T TIGR00763 418 FLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEK 497 (775)
T ss_pred EEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHH
Confidence 5899999997643 47899988731 0356789999999999 99999999999999999988
Q ss_pred HHHHHHHH-----HH-----cCCCCCHHHHHHHHHHcC--CcHHHHHHHHH
Q 042716 61 VEVLEFIA-----EQ-----EGIQLPHQLAEKIADNSK--NNLRQAIRSFE 99 (137)
Q Consensus 61 ~~~l~~i~-----~~-----egi~i~~~~l~~i~~~~~--gd~R~aln~L~ 99 (137)
..+++... ++ +++.++++++..+++... ...|.+-..++
T Consensus 498 ~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 498 LEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 88776543 22 346799999999998543 23444444333
No 115
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=98.76 E-value=1.4e-07 Score=74.13 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=101.0
Q ss_pred cccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCC---c-hhhhhc--ceeeEecCCCHHHHHHHHHHHHHHcCCCC
Q 042716 2 ILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK---L-QPIKSL--CTVIQLLPPSKQEIVEVLEFIAEQEGIQL 75 (137)
Q Consensus 2 iiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~---i-~~l~SR--c~~i~~~~~~~~~i~~~l~~i~~~egi~i 75 (137)
++.+...........|...++.++..+.+|++.+...+ + +-+... ...+.|.+++..++..|+...+++.|+.+
T Consensus 76 iv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i 155 (328)
T PRK08487 76 IIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQERAKELGLDI 155 (328)
T ss_pred EEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHHHHHhCCCC
Confidence 44555555566677888889888766655554444432 3 322222 56899999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc--cCC-cHHHHHHHHHHHHhcC
Q 042716 76 PHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI--LTG-WEDDITNIATKIIEEQ 133 (137)
Q Consensus 76 ~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~--~~~-~~~~~~~i~~~i~~~~ 133 (137)
+++++..++..+++|+..+.+-|+.+......+|...+- +.+ -+..++++++.+++++
T Consensus 156 ~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g~ 216 (328)
T PRK08487 156 DQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNKK 216 (328)
T ss_pred CHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCCC
Confidence 999999999999999999999999988765567777664 233 4666888888888765
No 116
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=98.70 E-value=2.5e-07 Score=72.42 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=93.1
Q ss_pred CcccccCcCCHHH-HHHHHHHHH--hccCC--ceEEEEeCCCC------Cc-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDA-LLYMRWLLE--RYKGL--NKVFFCCSDVS------KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le--~~~~~--~~~Il~~n~~~------~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
|++++++.+.... ...+..+.+ +++++ ..+++.++..+ +. +++.++|.++.+.+++..++..++...+
T Consensus 80 vii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~ 159 (340)
T PRK05574 80 VELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWIQQRL 159 (340)
T ss_pred EEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4788999886653 233333332 23333 33444444432 22 6788899999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC--CCcccCccc-c--CCcHHHHHHHHHHHHhcC
Q 042716 69 EQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMN--YPFVEGQVI-L--TGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 69 ~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~--~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~ 133 (137)
++.|+.+++++++.+++.++||++.+.+-++.+.... .+++.+.+- . ..-+..++++++.+++.+
T Consensus 160 ~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~ 229 (340)
T PRK05574 160 KQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGK 229 (340)
T ss_pred HHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCC
Confidence 9999999999999999999999999999999887532 235555443 1 112344556666665543
No 117
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=98.64 E-value=5.5e-07 Score=70.93 Aligned_cols=124 Identities=10% Similarity=0.096 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhccCCceEEEEeCCCCC---c-hhhh--hcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042716 11 TDALLYMRWLLERYKGLNKVFFCCSDVSK---L-QPIK--SLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIA 84 (137)
Q Consensus 11 ~~~~~~L~~~le~~~~~~~~Il~~n~~~~---i-~~l~--SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~ 84 (137)
+.....|...++.++..+.+|+.+....+ + +.+. .....+.+.+++..++..|+.+.+++.|+.+++++++.++
T Consensus 92 ~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~ 171 (343)
T PRK06585 92 KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEAGLRITPDARALLV 171 (343)
T ss_pred hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 34566788899988888888887755432 4 3331 2346789999999999999999999999999999999999
Q ss_pred HHcCCcHHHHHHHHHHHHhcC---CCcccCccc--cCC-cHHHHHHHHHHHHhcCC
Q 042716 85 DNSKNNLRQAIRSFEASRQMN---YPFVEGQVI--LTG-WEDDITNIATKIIEEQS 134 (137)
Q Consensus 85 ~~~~gd~R~aln~L~~~~~~~---~~~~~~~~~--~~~-~~~~~~~i~~~i~~~~~ 134 (137)
+.++||++.+.|-|+.+.... ..+|.+.+. +.+ -+..++++++.+++++.
T Consensus 172 ~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~ 227 (343)
T PRK06585 172 ALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDL 227 (343)
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCH
Confidence 999999999999999988642 247777765 222 36668888888887764
No 118
>PRK05907 hypothetical protein; Provisional
Probab=98.64 E-value=4e-07 Score=71.37 Aligned_cols=129 Identities=12% Similarity=0.164 Sum_probs=98.5
Q ss_pred cccCcCCHHHHHHHHHHHHhccCCceEE-EEeCCCCC---c-hhhhhcceee----EecCCCHHHHHHHHHHHHHHcCCC
Q 042716 4 CEADKLSTDALLYMRWLLERYKGLNKVF-FCCSDVSK---L-QPIKSLCTVI----QLLPPSKQEIVEVLEFIAEQEGIQ 74 (137)
Q Consensus 4 DEid~l~~~~~~~L~~~le~~~~~~~~I-l~~n~~~~---i-~~l~SRc~~i----~~~~~~~~~i~~~l~~i~~~egi~ 74 (137)
.+.+.++......|.+.+++|++.+.+| +++ ...+ + +.+. .+..+ .|.++...++..|+.+.++++|..
T Consensus 76 ~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i~-k~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~ 153 (311)
T PRK05907 76 YQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKLS-SALCLSLFGEWFADRDKRIAQLLIQRAKELGIS 153 (311)
T ss_pred ecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHHh-hcceeccccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 3445566666788999999999876666 555 3322 3 4444 35555 899999999999999999999999
Q ss_pred CCHHHHHHHHHHc-CCcHHHHHHHHHHHHhc---CCCcccCccc--cCC-cHHHHHHHHHHHHhcCC
Q 042716 75 LPHQLAEKIADNS-KNNLRQAIRSFEASRQM---NYPFVEGQVI--LTG-WEDDITNIATKIIEEQS 134 (137)
Q Consensus 75 i~~~~l~~i~~~~-~gd~R~aln~L~~~~~~---~~~~~~~~~~--~~~-~~~~~~~i~~~i~~~~~ 134 (137)
++++++..++..+ ++|+..+.+-|+.+... +..|+.+.+- +.+ -+..++++++.|+.++.
T Consensus 154 i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~ 220 (311)
T PRK05907 154 CSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDR 220 (311)
T ss_pred cCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCH
Confidence 9999999999999 69999999999988654 2347666664 233 46668888888887653
No 119
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.63 E-value=7.2e-07 Score=67.54 Aligned_cols=103 Identities=19% Similarity=0.189 Sum_probs=78.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccC---CceEEEEeCCC-------CCchhhhhcc-eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKG---LNKVFFCCSDV-------SKLQPIKSLC-TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~---~~~~Il~~n~~-------~~i~~l~SRc-~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.++..+.+.|+.+.+.... ...+++++... +...++++|. ..+.+++++.+++..++...+.
T Consensus 127 liiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 127 LVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred EEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHH
Confidence 58999999999888888766553221 23456665432 1125688884 6799999999999999998887
Q ss_pred HcC----CCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 70 QEG----IQLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 70 ~eg----i~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
..| ..++++++..|.+.+.|++|.+..++..+..
T Consensus 207 ~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~ 244 (269)
T TIGR03015 207 RAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLL 244 (269)
T ss_pred HcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 665 4799999999999999999998777776643
No 120
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.60 E-value=1.6e-06 Score=66.25 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=87.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc----------------cCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCCHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERY----------------KGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPSKQ 58 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~----------------~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~~~ 58 (137)
++|||+|++.++.|+.|+.++|+. ++++++|+|+|... .+ ++|++||..+.+..|+.+
T Consensus 109 lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~ 188 (262)
T TIGR02640 109 LVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDID 188 (262)
T ss_pred EEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHH
Confidence 589999999999999999999863 13567888888652 36 899999999999999998
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc----------CCcHHHHHHHHHHHHhcCCCcccCccccCCcHHHHHHHHHH
Q 042716 59 EIVEVLEFIAEQEGIQLPHQLAEKIADNS----------KNNLRQAIRSFEASRQMNYPFVEGQVILTGWEDDITNIATK 128 (137)
Q Consensus 59 ~i~~~l~~i~~~egi~i~~~~l~~i~~~~----------~gd~R~aln~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 128 (137)
+-..++... ..++++.++++++.. .-.+|.++...+.+...+.+ ....++++.++...
T Consensus 189 ~e~~Il~~~-----~~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 256 (262)
T TIGR02640 189 TETAILRAK-----TDVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQDIP-------VDVDDEDFVDLCID 256 (262)
T ss_pred HHHHHHHHh-----hCCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcCCC-------CCCCcHHHHHHHHH
Confidence 888887753 346777777766543 12378888887777654321 00136667777777
Q ss_pred HHhc
Q 042716 129 IIEE 132 (137)
Q Consensus 129 i~~~ 132 (137)
++.+
T Consensus 257 ~~~~ 260 (262)
T TIGR02640 257 ILAS 260 (262)
T ss_pred Hhcc
Confidence 7754
No 121
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.59 E-value=7.4e-07 Score=74.20 Aligned_cols=103 Identities=21% Similarity=0.308 Sum_probs=73.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc--cCCc-eEEEEeCCC---------C-------Cc--hhhhhc--ceeeEecCCCH
Q 042716 1 IILCEADKLSTDALLYMRWLLERY--KGLN-KVFFCCSDV---------S-------KL--QPIKSL--CTVIQLLPPSK 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~--~~~~-~~Il~~n~~---------~-------~i--~~l~SR--c~~i~~~~~~~ 57 (137)
|+|+|.=.+.......++..+.++ ...+ |+|++.++. . .+ +.+++. +..+.|.|+..
T Consensus 136 ILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~ 215 (519)
T PF03215_consen 136 ILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAP 215 (519)
T ss_pred EEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCH
Confidence 356666665433334555554443 3455 866665521 1 13 566654 57899999999
Q ss_pred HHHHHHHHHHHHHc-----CC-CCC--HHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 58 QEIVEVLEFIAEQE-----GI-QLP--HQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 58 ~~i~~~l~~i~~~e-----gi-~i~--~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
.-+.+.|.+|+.+| |. ..+ ..+++.|+..+.||+|.|+|.||++..
T Consensus 216 T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 216 TFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 99999999999999 33 333 346899999999999999999999987
No 122
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.59 E-value=3.1e-07 Score=80.44 Aligned_cols=103 Identities=15% Similarity=0.218 Sum_probs=85.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-----------------------------CCc
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-----------------------------SKL 40 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-----------------------------~~i 40 (137)
|+|||+|.++++.++.|+.++++.. .++.||||+|-. ...
T Consensus 672 vllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 751 (852)
T TIGR03345 672 VLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVF 751 (852)
T ss_pred EEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhc
Confidence 5899999999999999999999765 678899998831 015
Q ss_pred -hhhhhcceeeEecCCCHHHHHHHHHHHHH--------HcC--CCCCHHHHHHHHHHcCC---cHHHHHHHHHHHHh
Q 042716 41 -QPIKSLCTVIQLLPPSKQEIVEVLEFIAE--------QEG--IQLPHQLAEKIADNSKN---NLRQAIRSFEASRQ 103 (137)
Q Consensus 41 -~~l~SRc~~i~~~~~~~~~i~~~l~~i~~--------~eg--i~i~~~~l~~i~~~~~g---d~R~aln~L~~~~~ 103 (137)
|.++|||.++.|.+++.+++.+++..... +.| +.++++++.+|++.+.+ +.|.+.+.++....
T Consensus 752 ~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~ 828 (852)
T TIGR03345 752 KPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLL 828 (852)
T ss_pred cHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 78999999999999999998888754332 225 47899999999999887 89999999987653
No 123
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.56 E-value=1.1e-07 Score=82.57 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=68.6
Q ss_pred CcccccCcCCHHH----HHHHHHHHHhc---------------cCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHH
Q 042716 1 IILCEADKLSTDA----LLYMRWLLERY---------------KGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~----~~~L~~~le~~---------------~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i 60 (137)
++|||+|.+++.. +.+|+.+++.- -+++.||+|+|+. .| ++|++||.+++|.+++.++.
T Consensus 420 illDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek 498 (784)
T PRK10787 420 FLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEK 498 (784)
T ss_pred EEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHH
Confidence 5899999998765 58999999831 1466688888776 59 99999999999999999999
Q ss_pred HHHHHHHHH-----H-----cCCCCCHHHHHHHHHHc
Q 042716 61 VEVLEFIAE-----Q-----EGIQLPHQLAEKIADNS 87 (137)
Q Consensus 61 ~~~l~~i~~-----~-----egi~i~~~~l~~i~~~~ 87 (137)
..+++.... + ..+.++++++..+++.+
T Consensus 499 ~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~y 535 (784)
T PRK10787 499 LNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYY 535 (784)
T ss_pred HHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhC
Confidence 888765542 2 13578999999999754
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.56 E-value=2.6e-07 Score=79.68 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=81.2
Q ss_pred CcccccCcCC---------HHHHHHHHHHHHhccCCceEEEEeCCC-----CCc-hhhhhcceeeEecCCCHHHHHHHHH
Q 042716 1 IILCEADKLS---------TDALLYMRWLLERYKGLNKVFFCCSDV-----SKL-QPIKSLCTVIQLLPPSKQEIVEVLE 65 (137)
Q Consensus 1 iiiDEid~l~---------~~~~~~L~~~le~~~~~~~~Il~~n~~-----~~i-~~l~SRc~~i~~~~~~~~~i~~~l~ 65 (137)
+||||+|.+. ..+++.|+..++ .+...+|.+||.. ... ++|.+||..+.+.+|+.++...+|+
T Consensus 278 LfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~ 355 (731)
T TIGR02639 278 LFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILK 355 (731)
T ss_pred EEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHH
Confidence 5899999995 235788888888 5677788888863 236 8999999999999999999999998
Q ss_pred HHHHH----cCCCCCHHHHHHHHHHcCC---c---HHHHHHHHHHHH
Q 042716 66 FIAEQ----EGIQLPHQLAEKIADNSKN---N---LRQAIRSFEASR 102 (137)
Q Consensus 66 ~i~~~----egi~i~~~~l~~i~~~~~g---d---~R~aln~L~~~~ 102 (137)
....+ .++.++++++..++..+.+ | +++|+.+|+.+.
T Consensus 356 ~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~ 402 (731)
T TIGR02639 356 GLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAG 402 (731)
T ss_pred HHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhh
Confidence 76654 4678999999999988754 3 888999997654
No 125
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.43 E-value=4.5e-07 Score=79.41 Aligned_cols=99 Identities=13% Similarity=0.178 Sum_probs=78.4
Q ss_pred CcccccCcCCH-----H---HHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLST-----D---ALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~~-----~---~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
+||||+|.|.+ + +.+.|...++ .+...+|.+|+... .+ ++|++||+.+.+++|+.++...+|+.
T Consensus 284 LfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 284 LFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRG 361 (852)
T ss_pred EEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHH
Confidence 58999999964 2 2346888887 66777888888641 26 99999999999999999999999766
Q ss_pred HHHH----cCCCCCHHHHHHHHHHcCC------cHHHHHHHHHHH
Q 042716 67 IAEQ----EGIQLPHQLAEKIADNSKN------NLRQAIRSFEAS 101 (137)
Q Consensus 67 i~~~----egi~i~~~~l~~i~~~~~g------d~R~aln~L~~~ 101 (137)
+... .++.++++++..++..+.+ =+.+|+.+|+.+
T Consensus 362 ~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea 406 (852)
T TIGR03345 362 LAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTA 406 (852)
T ss_pred HHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHH
Confidence 5543 4788999999999998853 367888888754
No 126
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.37 E-value=2.6e-06 Score=67.20 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=81.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcc--eeeEecCCC--H
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLC--TVIQLLPPS--K 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc--~~i~~~~~~--~ 57 (137)
++|||+|.|+...|..|+.++++.. .++++|++++.. ..+ ++|..|+ ..+.++|+. .
T Consensus 97 L~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~ 176 (329)
T TIGR02974 97 LFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQ 176 (329)
T ss_pred EEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhh
Confidence 5899999999999999999998642 346888888754 246 8899998 467887777 3
Q ss_pred HHHHHHHHH----HHHHcC----CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhcC
Q 042716 58 QEIVEVLEF----IAEQEG----IQLPHQLAEKIADNS-KNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 58 ~~i~~~l~~----i~~~eg----i~i~~~~l~~i~~~~-~gd~R~aln~L~~~~~~~ 105 (137)
+|+...+.. .+.+.| ..++++++..+..+. .||+|.+-|.++.+....
T Consensus 177 eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 177 EDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 566555443 444444 358999999999985 999999999999887644
No 127
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.8e-06 Score=68.01 Aligned_cols=106 Identities=20% Similarity=0.166 Sum_probs=79.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc---CCceEEEEeCCCC---Cc-hhhhhcce--eeEecCCCHHHHHHHHHHHHHH-
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK---GLNKVFFCCSDVS---KL-QPIKSLCT--VIQLLPPSKQEIVEVLEFIAEQ- 70 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~---~~~~~Il~~n~~~---~i-~~l~SRc~--~i~~~~~~~~~i~~~l~~i~~~- 70 (137)
|++||+|.|....+..|+.+..-+. .++-+|.++|+.. .+ +.++|+.. .+.|+|++.+|+.++|...++.
T Consensus 127 vvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~ 206 (366)
T COG1474 127 VILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG 206 (366)
T ss_pred EEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh
Confidence 5899999997776555555554333 2334777777774 36 89999973 5789999999999999987763
Q ss_pred -cCCCCCHHHHHHHHHH---cCCcHHHHHHHHHHHHhcCC
Q 042716 71 -EGIQLPHQLAEKIADN---SKNNLRQAIRSFEASRQMNY 106 (137)
Q Consensus 71 -egi~i~~~~l~~i~~~---~~gd~R~aln~L~~~~~~~~ 106 (137)
..-.+++++++.++.. ..||.|.|+..|..+...+.
T Consensus 207 ~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 207 FSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred ccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 3346888888887743 56799999999998776443
No 128
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.24 E-value=9.2e-06 Score=67.79 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=79.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcce--eeEecCCC--H
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCT--VIQLLPPS--K 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~--~i~~~~~~--~ 57 (137)
++|||+|.|+...|..|+.++++.. .++++|++|+.. ..+ ++|..|+. .+.++|+. .
T Consensus 294 L~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~ 373 (534)
T TIGR01817 294 LFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERR 373 (534)
T ss_pred EEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCccccc
Confidence 5899999999999999999998632 136888888765 235 78888874 56677776 4
Q ss_pred HHHHHHHHHH----HHHcC--CCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhcC
Q 042716 58 QEIVEVLEFI----AEQEG--IQLPHQLAEKIADN-SKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 58 ~~i~~~l~~i----~~~eg--i~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~~~ 105 (137)
+++...+... +.+.| +.++++++..+..+ -+||+|.+.|.++.+....
T Consensus 374 eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 374 EDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred ccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 5665554443 33333 57899999999998 5999999999999887543
No 129
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.22 E-value=8e-06 Score=71.46 Aligned_cols=101 Identities=13% Similarity=0.193 Sum_probs=75.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-----------cCCceEEEEeCCCCC------------------------------
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-----------KGLNKVFFCCSDVSK------------------------------ 39 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-----------~~~~~~Il~~n~~~~------------------------------ 39 (137)
|++||+|.++++.+++|+.++|+. -.++.||+|||....
T Consensus 615 vllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~ 694 (821)
T CHL00095 615 VLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLV 694 (821)
T ss_pred EEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHH
Confidence 579999999999999999999974 257789999884210
Q ss_pred -------c-hhhhhcc-eeeEecCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHHcC---CcHHHHHHHH
Q 042716 40 -------L-QPIKSLC-TVIQLLPPSKQEIVEVLEFIAE-------QEG--IQLPHQLAEKIADNSK---NNLRQAIRSF 98 (137)
Q Consensus 40 -------i-~~l~SRc-~~i~~~~~~~~~i~~~l~~i~~-------~eg--i~i~~~~l~~i~~~~~---gd~R~aln~L 98 (137)
. |.+.+|+ .++.|++++.+++..++..... ..| +.+++++..++++.+. .-.|.+-..+
T Consensus 695 ~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i 774 (821)
T CHL00095 695 NEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAI 774 (821)
T ss_pred HHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHH
Confidence 3 5689999 8999999999999888765443 233 5788999999998742 1245444444
Q ss_pred HHH
Q 042716 99 EAS 101 (137)
Q Consensus 99 ~~~ 101 (137)
+..
T Consensus 775 ~~~ 777 (821)
T CHL00095 775 MRL 777 (821)
T ss_pred HHH
Confidence 433
No 130
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.4e-06 Score=74.10 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=75.4
Q ss_pred CcccccCcCCHHH----HHHHHHHHHhcc---------------CCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHH
Q 042716 1 IILCEADKLSTDA----LLYMRWLLERYK---------------GLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~----~~~L~~~le~~~---------------~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i 60 (137)
++|||+|.|+... ..||+.+++--. +++-||+|+|+...| .||+.|..++++..++.++-
T Consensus 421 ~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EK 500 (782)
T COG0466 421 FLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEK 500 (782)
T ss_pred EEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHH
Confidence 5799999997653 889999986211 255699999999999 99999999999999999998
Q ss_pred HHHHHHH-----HHHcC-----CCCCHHHHHHHHHHcCC--cHHHHHHHHH
Q 042716 61 VEVLEFI-----AEQEG-----IQLPHQLAEKIADNSKN--NLRQAIRSFE 99 (137)
Q Consensus 61 ~~~l~~i-----~~~eg-----i~i~~~~l~~i~~~~~g--d~R~aln~L~ 99 (137)
..+.++. .+..| +.++++++..|+++..+ -.|.+-.-+.
T Consensus 501 l~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ 551 (782)
T COG0466 501 LEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIA 551 (782)
T ss_pred HHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHH
Confidence 8877653 34444 46899999999987532 2444444443
No 131
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.21 E-value=1.4e-05 Score=66.59 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=53.3
Q ss_pred hhcceeeEecCCCHHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 44 KSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLP------HQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 44 ~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~------~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.-|...+.|.|+.+.-+.+.|..||..|+...+ ...++.++..+.||+|.|+|+||..+
T Consensus 256 ~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 256 EPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGGDIRSAINSLQLSS 320 (634)
T ss_pred ccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCccHHHHHhHhhhhc
Confidence 344578999999999999999999999998888 67789999999999999999999985
No 132
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=1.6e-06 Score=70.77 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=77.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-CCce--EEEEeCCCC---Cc-hhhhhcc----eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-GLNK--VFFCCSDVS---KL-QPIKSLC----TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-~~~~--~Il~~n~~~---~i-~~l~SRc----~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
+++||.|.|....+..|+.+.|-+. .+.+ +|-++|... .. +.|..|| .++.|+|++.+|+..+|++...
T Consensus 260 lVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 260 LVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred EEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 5789999999888999888887653 2344 445567664 35 8999976 5899999999999999998877
Q ss_pred HcCCCCC-HHHHHHHHHH---cCCcHHHHHHHHHH
Q 042716 70 QEGIQLP-HQLAEKIADN---SKNNLRQAIRSFEA 100 (137)
Q Consensus 70 ~egi~i~-~~~l~~i~~~---~~gd~R~aln~L~~ 100 (137)
.+-...- +.+++..+.- ..||+|+|+..++.
T Consensus 340 ~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 340 EESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred cccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 7655433 4477777653 57999999999983
No 133
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.20 E-value=1.8e-05 Score=69.55 Aligned_cols=102 Identities=16% Similarity=0.236 Sum_probs=77.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------------------------CCc-hhh
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------------------------SKL-QPI 43 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------------------------~~i-~~l 43 (137)
++|||+|.+++..++.|+.++++.. .++.||+|||.. ... |.|
T Consensus 674 LllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEL 753 (857)
T PRK10865 674 ILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEF 753 (857)
T ss_pred EEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHH
Confidence 5899999999999999999998642 345589999862 125 789
Q ss_pred hhcc-eeeEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHcCC---cHHHHHHHHHHHH
Q 042716 44 KSLC-TVIQLLPPSKQEIVEVLEFIAEQ-------EG--IQLPHQLAEKIADNSKN---NLRQAIRSFEASR 102 (137)
Q Consensus 44 ~SRc-~~i~~~~~~~~~i~~~l~~i~~~-------eg--i~i~~~~l~~i~~~~~g---d~R~aln~L~~~~ 102 (137)
++|+ .++.|.|++.+++..++.....+ .| +.++++++.+|++.... ..|.+-+.++...
T Consensus 754 lnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i 825 (857)
T PRK10865 754 INRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQI 825 (857)
T ss_pred HHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHH
Confidence 9999 89999999999988876654432 24 46799999999986532 3666666666554
No 134
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.18 E-value=1.7e-05 Score=69.71 Aligned_cols=103 Identities=12% Similarity=0.203 Sum_probs=81.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC-------------------------Cc-hhh
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS-------------------------KL-QPI 43 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~-------------------------~i-~~l 43 (137)
+++||+|.+++..++.|+.++++.. .++.||+|||-.. .. |.|
T Consensus 671 lllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel 750 (852)
T TIGR03346 671 VLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEF 750 (852)
T ss_pred EEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHH
Confidence 5899999999999999999998752 4566999998621 14 678
Q ss_pred hhcc-eeeEecCCCHHHHHHHHHHHH-------HHcC--CCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHh
Q 042716 44 KSLC-TVIQLLPPSKQEIVEVLEFIA-------EQEG--IQLPHQLAEKIADNS---KNNLRQAIRSFEASRQ 103 (137)
Q Consensus 44 ~SRc-~~i~~~~~~~~~i~~~l~~i~-------~~eg--i~i~~~~l~~i~~~~---~gd~R~aln~L~~~~~ 103 (137)
.+|+ .++.|.|++.+++.+++.... ...| +.++++++.+|++.. .+..|.+-+.++....
T Consensus 751 ~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~ 823 (852)
T TIGR03346 751 LNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIE 823 (852)
T ss_pred hcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHH
Confidence 8888 799999999998887765433 2233 578999999999974 4889999999887763
No 135
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.11 E-value=2.1e-05 Score=63.55 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=79.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHh-----------ccCCceEEEEeCCCC--Cc-h--hhhhcce--eeEecCCCHH--HH
Q 042716 1 IILCEADKLSTDALLYMRWLLER-----------YKGLNKVFFCCSDVS--KL-Q--PIKSLCT--VIQLLPPSKQ--EI 60 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~-----------~~~~~~~Il~~n~~~--~i-~--~l~SRc~--~i~~~~~~~~--~i 60 (137)
+|+||+|.|.++.|..|++++|+ .+.++++|++|+... .+ . ++..|+. .++++++..- |+
T Consensus 177 LfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di 256 (403)
T COG1221 177 LFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDI 256 (403)
T ss_pred EehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhH
Confidence 58999999999999999999998 456788999988773 46 7 9999885 4555555442 33
Q ss_pred H----HHHHHHHHHcCCCCC---HHHHHHHHHH-cCCcHHHHHHHHHHHHhcCC
Q 042716 61 V----EVLEFIAEQEGIQLP---HQLAEKIADN-SKNNLRQAIRSFEASRQMNY 106 (137)
Q Consensus 61 ~----~~l~~i~~~egi~i~---~~~l~~i~~~-~~gd~R~aln~L~~~~~~~~ 106 (137)
. -.++..|++-|..++ ++++..+..+ ..|++|...|.++.......
T Consensus 257 ~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 257 LLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 3 334566777777544 4667776665 79999999999998877654
No 136
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=3.9e-06 Score=71.62 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=69.3
Q ss_pred CcccccCcCCHH----HHHHHHHHHHhcc---------------CCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHH
Q 042716 1 IILCEADKLSTD----ALLYMRWLLERYK---------------GLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~----~~~~L~~~le~~~---------------~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i 60 (137)
|+|||+|.+..+ ...||+.+++--. +.+-||+|+|....| +||+.|..++.+..+..++-
T Consensus 509 iLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEK 588 (906)
T KOG2004|consen 509 ILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEK 588 (906)
T ss_pred EEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHH
Confidence 579999999743 3778888886211 245699999999999 99999999999999999998
Q ss_pred HHHHHHHH-----HH-----cCCCCCHHHHHHHHHHc
Q 042716 61 VEVLEFIA-----EQ-----EGIQLPHQLAEKIADNS 87 (137)
Q Consensus 61 ~~~l~~i~-----~~-----egi~i~~~~l~~i~~~~ 87 (137)
.++.++.. +. +.++++++++..++++.
T Consensus 589 v~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 589 VKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred HHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence 88876543 33 34689999999988764
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.08 E-value=2.1e-05 Score=68.01 Aligned_cols=102 Identities=11% Similarity=0.184 Sum_probs=77.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC-------------------------Cc-hhh
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS-------------------------KL-QPI 43 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~-------------------------~i-~~l 43 (137)
|+|||+|.++++.++.|+.++++.. .++.||+|+|-.. .+ |.+
T Consensus 557 vllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef 636 (731)
T TIGR02639 557 LLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEF 636 (731)
T ss_pred EEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHH
Confidence 5899999999999999999999641 3566888887531 25 788
Q ss_pred hhcc-eeeEecCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHHcC---CcHHHHHHHHHHHH
Q 042716 44 KSLC-TVIQLLPPSKQEIVEVLEFIAE-------QEG--IQLPHQLAEKIADNSK---NNLRQAIRSFEASR 102 (137)
Q Consensus 44 ~SRc-~~i~~~~~~~~~i~~~l~~i~~-------~eg--i~i~~~~l~~i~~~~~---gd~R~aln~L~~~~ 102 (137)
++|+ .++.|++++.+++.+++....+ ..| +.++++++.+|++.+. ...|.+-..++...
T Consensus 637 ~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~ 708 (731)
T TIGR02639 637 RNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEI 708 (731)
T ss_pred HhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHh
Confidence 9998 6999999999999988876553 222 6789999999998642 33566655555444
No 138
>PRK15115 response regulator GlrR; Provisional
Probab=98.07 E-value=6.1e-05 Score=61.12 Aligned_cols=105 Identities=12% Similarity=0.160 Sum_probs=73.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcce--eeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCT--VIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~--~i~~~~~~~-- 57 (137)
++|||+|.|+...|..|++.+++.. .++++|++|+.. ..+ +.|..|.. .+.++|+.+
T Consensus 232 l~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~ 311 (444)
T PRK15115 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERT 311 (444)
T ss_pred EEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhcc
Confidence 5899999999999999999998642 145788888754 123 45555543 344444433
Q ss_pred HHHHHH----HHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhcC
Q 042716 58 QEIVEV----LEFIAEQEG---IQLPHQLAEKIADNS-KNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 58 ~~i~~~----l~~i~~~eg---i~i~~~~l~~i~~~~-~gd~R~aln~L~~~~~~~ 105 (137)
+++... +...+.+.| ..++++++..+..+. +||+|++.|.++.+....
T Consensus 312 eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 312 EDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 344333 333344334 248999999999987 999999999999877543
No 139
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.07 E-value=1.3e-05 Score=69.65 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=76.5
Q ss_pred CcccccCcCC---------HHHHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCCHHHHHHHHH
Q 042716 1 IILCEADKLS---------TDALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPSKQEIVEVLE 65 (137)
Q Consensus 1 iiiDEid~l~---------~~~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~~~~i~~~l~ 65 (137)
+||||+|.|. .+..+.|...++ .+...+|.+||... .. ++|.+|+..+.+++|+.++...+|+
T Consensus 282 LfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~ 359 (758)
T PRK11034 282 LFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIIN 359 (758)
T ss_pred EEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHH
Confidence 5899999982 123455667776 55667777777653 35 8999999999999999999999998
Q ss_pred HHH----HHcCCCCCHHHHHHHHHHcCC------cHHHHHHHHHHHH
Q 042716 66 FIA----EQEGIQLPHQLAEKIADNSKN------NLRQAIRSFEASR 102 (137)
Q Consensus 66 ~i~----~~egi~i~~~~l~~i~~~~~g------d~R~aln~L~~~~ 102 (137)
.+. ...++.++++++..+++.+.+ =+.+|+.+|+.+.
T Consensus 360 ~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~ 406 (758)
T PRK11034 360 GLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAG 406 (758)
T ss_pred HHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHH
Confidence 654 345789999999988876554 2458999998765
No 140
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.07 E-value=1.8e-05 Score=69.58 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=78.9
Q ss_pred CcccccCcCCH--------HHHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLST--------DALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~~--------~~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
+||||+|.|.+ ++++.|...++ .+..++|.+|+... .. +++.+|++.+.+..|+.++...+|+.
T Consensus 270 LfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~ 347 (852)
T TIGR03346 270 LFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRG 347 (852)
T ss_pred EEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHH
Confidence 58999999963 24667777776 56677888887662 36 89999999999999999999998876
Q ss_pred HHHH----cCCCCCHHHHHHHHHHcC---Cc---HHHHHHHHHHHHh
Q 042716 67 IAEQ----EGIQLPHQLAEKIADNSK---NN---LRQAIRSFEASRQ 103 (137)
Q Consensus 67 i~~~----egi~i~~~~l~~i~~~~~---gd---~R~aln~L~~~~~ 103 (137)
...+ .++.++++++...+..+. +| +.+|+.+|+.+..
T Consensus 348 ~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 348 LKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred HHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHH
Confidence 6543 467889999988887664 44 7899999987653
No 141
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.04 E-value=4.5e-05 Score=61.91 Aligned_cols=106 Identities=12% Similarity=0.097 Sum_probs=76.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcce--eeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCT--VIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~--~i~~~~~~~-- 57 (137)
++|||+|.|+...|..|++++++.. .++++|++++.. ..+ +.|..|+. .+.++|+.+
T Consensus 237 l~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~ 316 (445)
T TIGR02915 237 LFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRD 316 (445)
T ss_pred EEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhch
Confidence 5899999999999999999998632 256889988765 235 67878875 455555544
Q ss_pred HHHHH----HHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhcCC
Q 042716 58 QEIVE----VLEFIAEQEG---IQLPHQLAEKIADNS-KNNLRQAIRSFEASRQMNY 106 (137)
Q Consensus 58 ~~i~~----~l~~i~~~eg---i~i~~~~l~~i~~~~-~gd~R~aln~L~~~~~~~~ 106 (137)
+++.. .+.+.+.+.| ..++++++..+..+. +||+|.+-|.++.+.....
T Consensus 317 ~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 317 GDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 23332 3344444444 468999999998874 8999999999998876443
No 142
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.03 E-value=5.6e-05 Score=61.61 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=80.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC-------Cc-hhhhhcce--eeEecCCC--H
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS-------KL-QPIKSLCT--VIQLLPPS--K 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~-------~i-~~l~SRc~--~i~~~~~~--~ 57 (137)
++|||+|.|+...|..|+.++++.. .++++|++++... .. +.|..|.. .+.++|+. .
T Consensus 232 l~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~ 311 (463)
T TIGR01818 232 LFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERR 311 (463)
T ss_pred EEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccch
Confidence 5899999999999999999998632 2457888887552 35 68888864 67777777 5
Q ss_pred HHHHHHHH----HHHHHcC---CCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhcCC
Q 042716 58 QEIVEVLE----FIAEQEG---IQLPHQLAEKIADN-SKNNLRQAIRSFEASRQMNY 106 (137)
Q Consensus 58 ~~i~~~l~----~i~~~eg---i~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~~~~ 106 (137)
+++...+. +.+.+.| ..++++++..+..+ -.||+|.+-|.++.+...+.
T Consensus 312 ~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 312 EDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 66665554 3444444 46899999999887 58999999999998876543
No 143
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.02 E-value=1.4e-05 Score=61.56 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=66.9
Q ss_pred CcccccCcCCH------------HHHHHHHHHHHhccC--CceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHHHHHH
Q 042716 1 IILCEADKLST------------DALLYMRWLLERYKG--LNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~~------------~~~~~L~~~le~~~~--~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i~~~l 64 (137)
+||||.|.+.- +..|||+.-|+-... ++.+|.+||.+.-+ +++|||+ ..+.|.-|++++....|
T Consensus 214 vFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~il 293 (368)
T COG1223 214 VFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEIL 293 (368)
T ss_pred EEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHH
Confidence 58999998732 236788877765443 34577888888889 9999999 47999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc
Q 042716 65 EFIAEQEGIQLPHQLAEKIADNS 87 (137)
Q Consensus 65 ~~i~~~egi~i~~~~l~~i~~~~ 87 (137)
...+++--+.++-. +.+++..+
T Consensus 294 e~y~k~~Plpv~~~-~~~~~~~t 315 (368)
T COG1223 294 EYYAKKFPLPVDAD-LRYLAAKT 315 (368)
T ss_pred HHHHHhCCCccccC-HHHHHHHh
Confidence 99998887776655 56666553
No 144
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.01 E-value=2.8e-05 Score=56.80 Aligned_cols=94 Identities=27% Similarity=0.239 Sum_probs=62.8
Q ss_pred CcccccCcCC------HHHHHHHHHHHHh--ccCCceEEEEeCCCC------Cc-hhhhhcceeeEecCCCHHHHHHHHH
Q 042716 1 IILCEADKLS------TDALLYMRWLLER--YKGLNKVFFCCSDVS------KL-QPIKSLCTVIQLLPPSKQEIVEVLE 65 (137)
Q Consensus 1 iiiDEid~l~------~~~~~~L~~~le~--~~~~~~~Il~~n~~~------~i-~~l~SRc~~i~~~~~~~~~i~~~l~ 65 (137)
|+|||+|.+. +.....|...++. ...+..+|+++.... .- .++..|+..+.+++++.++..+.+.
T Consensus 122 iviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~ 201 (234)
T PF01637_consen 122 IVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLK 201 (234)
T ss_dssp EEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHH
T ss_pred EEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHH
Confidence 5899999998 4557778888886 234455666665431 22 5788999889999999999999999
Q ss_pred HHHHHcCCCC--CHHHHHHHHHHcCCcHHHHH
Q 042716 66 FIAEQEGIQL--PHQLAEKIADNSKNNLRQAI 95 (137)
Q Consensus 66 ~i~~~egi~i--~~~~l~~i~~~~~gd~R~al 95 (137)
...... .++ +++.+..+...++|.++.+.
T Consensus 202 ~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 202 ELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp HHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 876665 655 99999999999999998764
No 145
>CHL00176 ftsH cell division protein; Validated
Probab=98.00 E-value=6.5e-05 Score=64.19 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=68.3
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHh---cc--CCceEEEEeCCCCCc-hhhhhcc---eeeEecCCCHHHH
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLER---YK--GLNKVFFCCSDVSKL-QPIKSLC---TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~---~~--~~~~~Il~~n~~~~i-~~l~SRc---~~i~~~~~~~~~i 60 (137)
+||||+|.+. .+.++.|..++++ +. .+..+|.+||.+..+ +++++++ ..+.|..|+.++.
T Consensus 279 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R 358 (638)
T CHL00176 279 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGR 358 (638)
T ss_pred EEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHH
Confidence 5899999984 2334455555543 22 345688888888888 8888743 6899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSKN----NLRQAIR 96 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~g----d~R~aln 96 (137)
..+++..+++..+ .++..+..++..+.| |++.++|
T Consensus 359 ~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 359 LDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred HHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999998877543 245567889988777 5555555
No 146
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.98 E-value=5.8e-05 Score=63.01 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=80.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC-------Cc-hhhhhcc--eeeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS-------KL-QPIKSLC--TVIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~-------~i-~~l~SRc--~~i~~~~~~~-- 57 (137)
++|||+|.|+...|..|+.++++.. .++++|++|+... .. ++|..|. ..+.++|+.+
T Consensus 302 L~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~ 381 (520)
T PRK10820 302 VLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRP 381 (520)
T ss_pred EEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccCh
Confidence 5899999999999999999998631 2457888887652 35 7899995 5677777766
Q ss_pred HHHHHH----HHHHHHHcCC---CCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhcC
Q 042716 58 QEIVEV----LEFIAEQEGI---QLPHQLAEKIADN-SKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 58 ~~i~~~----l~~i~~~egi---~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~~~ 105 (137)
+++... +.+.+.+.|. .++++++..+..+ -.||+|++-|.++.+....
T Consensus 382 ~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 382 QDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 344433 4555666654 6899999999888 8999999999999887543
No 147
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.98 E-value=9.2e-05 Score=59.86 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=73.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC-------Cc-hhhhhcceee--EecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS-------KL-QPIKSLCTVI--QLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~-------~i-~~l~SRc~~i--~~~~~~~-- 57 (137)
++|||+|.|+...|..|+..+++.. .++++|++++... .+ +.|..|+..+ .++|+..
T Consensus 237 l~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~ 316 (441)
T PRK10365 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRR 316 (441)
T ss_pred EEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcc
Confidence 5899999999999999999998632 1456888876652 24 6677776544 4444443
Q ss_pred HHHHHHH----HHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhc
Q 042716 58 QEIVEVL----EFIAEQEG---IQLPHQLAEKIADNS-KNNLRQAIRSFEASRQM 104 (137)
Q Consensus 58 ~~i~~~l----~~i~~~eg---i~i~~~~l~~i~~~~-~gd~R~aln~L~~~~~~ 104 (137)
+++...+ .+.+.+.| ..++++++..+..+. +||+|.+.|.++.+...
T Consensus 317 ~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 317 EDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 2343333 33344333 358999999999986 99999999999987654
No 148
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.97 E-value=9.5e-05 Score=62.96 Aligned_cols=105 Identities=10% Similarity=0.049 Sum_probs=77.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcc--eeeEecCCCHH-
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLC--TVIQLLPPSKQ- 58 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc--~~i~~~~~~~~- 58 (137)
++|||+|.|....|..|++++++.. -++++|++|+.. ..+ +.|..|. ..+.++|+.+-
T Consensus 420 L~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~ 499 (638)
T PRK11388 420 LFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRR 499 (638)
T ss_pred EEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhh
Confidence 5899999999999999999998542 145788888754 235 6777775 45666666653
Q ss_pred -HHHHHHHHH----HHHcC--CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhcC
Q 042716 59 -EIVEVLEFI----AEQEG--IQLPHQLAEKIADNS-KNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 59 -~i~~~l~~i----~~~eg--i~i~~~~l~~i~~~~-~gd~R~aln~L~~~~~~~ 105 (137)
|+...+... +.+.| +.++++++..+..+. +||+|.+.|.++.+....
T Consensus 500 ~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 500 EDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC
Confidence 454444433 33322 568999999999986 999999999999877543
No 149
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=97.95 E-value=0.0001 Score=58.27 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhcc-CCceEEEEeCCCCC---c-hhhhhc--ceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042716 11 TDALLYMRWLLERYK-GLNKVFFCCSDVSK---L-QPIKSL--CTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKI 83 (137)
Q Consensus 11 ~~~~~~L~~~le~~~-~~~~~Il~~n~~~~---i-~~l~SR--c~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i 83 (137)
......+......++ ..+.+++.++...+ . +.+.+- +.++...+++.+++..|+...+++.|+.+++++++.+
T Consensus 89 ~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L 168 (334)
T COG1466 89 KDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIKKRAKELGLKIDQEAIQLL 168 (334)
T ss_pred chhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344455556665555 44445555555443 3 444443 6689999999999999999999999999999999999
Q ss_pred HHHcCCcHHHHHHHHHHHHhcCCC--cccCccc--cCC-cHHHHHHHHHHHHhcCC
Q 042716 84 ADNSKNNLRQAIRSFEASRQMNYP--FVEGQVI--LTG-WEDDITNIATKIIEEQS 134 (137)
Q Consensus 84 ~~~~~gd~R~aln~L~~~~~~~~~--~~~~~~~--~~~-~~~~~~~i~~~i~~~~~ 134 (137)
+...+||++.+.+-++.+.....+ ++.+.+. ..+ -+...++.++.++.++.
T Consensus 169 ~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~ 224 (334)
T COG1466 169 LEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDV 224 (334)
T ss_pred HHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCH
Confidence 999999999999999988875443 6655554 122 23345677777777664
No 150
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.90 E-value=0.00016 Score=60.14 Aligned_cols=105 Identities=10% Similarity=0.100 Sum_probs=78.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcce--eeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCT--VIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~--~i~~~~~~~-- 57 (137)
++|||+|.|....|..|++++++.. .++++|++|+.. ..+ .+|..|.. .+.++|+.+
T Consensus 285 L~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~ 364 (509)
T PRK05022 285 LFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERG 364 (509)
T ss_pred EEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhch
Confidence 5899999999999999999998532 256899999865 235 77888864 456666554
Q ss_pred HHHHHHH----HHHHHHcC---CCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhcC
Q 042716 58 QEIVEVL----EFIAEQEG---IQLPHQLAEKIADN-SKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 58 ~~i~~~l----~~i~~~eg---i~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~~~ 105 (137)
+++-..+ .+.+.+.| +.++++++..+..+ -.||+|.+-|.++.+....
T Consensus 365 eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 365 DDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 3444433 34444433 57999999998887 6899999999999887644
No 151
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.88 E-value=0.00018 Score=56.75 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=78.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcc--eeeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLC--TVIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc--~~i~~~~~~~-- 57 (137)
++|||+|.|+...|..|+.+++... .++++|++++.. ..+ ++|..|+ ..+.++|+.+
T Consensus 104 L~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~ 183 (326)
T PRK11608 104 LFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQ 183 (326)
T ss_pred EEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhh
Confidence 5899999999999999999998532 146788888764 236 8888887 4577777765
Q ss_pred HHHHHHHH----HHHHHcCC----CCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhc
Q 042716 58 QEIVEVLE----FIAEQEGI----QLPHQLAEKIADN-SKNNLRQAIRSFEASRQM 104 (137)
Q Consensus 58 ~~i~~~l~----~i~~~egi----~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~~ 104 (137)
+|+...+. +.+.+.|. .++++++..+..+ -.||+|.+-|.++.+...
T Consensus 184 eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 184 SDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 35544443 34555443 4799999998886 789999999999987754
No 152
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.87 E-value=8e-05 Score=64.75 Aligned_cols=100 Identities=13% Similarity=0.183 Sum_probs=73.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------------------------CCc-hhh
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------------------------SKL-QPI 43 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------------------------~~i-~~l 43 (137)
+++||+|.++++.++.|+.++++.. .++.||+|||.- ..+ |.+
T Consensus 561 lllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pef 640 (758)
T PRK11034 561 LLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEF 640 (758)
T ss_pred EEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHH
Confidence 5899999999999999999999642 356699999822 125 889
Q ss_pred hhcc-eeeEecCCCHHHHHHHHHHHH-------HHcCC--CCCHHHHHHHHHHcC---CcHHHHHHHHHH
Q 042716 44 KSLC-TVIQLLPPSKQEIVEVLEFIA-------EQEGI--QLPHQLAEKIADNSK---NNLRQAIRSFEA 100 (137)
Q Consensus 44 ~SRc-~~i~~~~~~~~~i~~~l~~i~-------~~egi--~i~~~~l~~i~~~~~---gd~R~aln~L~~ 100 (137)
.+|+ .++.|++++.+++..++.... +..|+ .++++++.+|++.+. ...|.+-+.++.
T Consensus 641 l~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 641 RNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred HccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 9999 589999999999887765432 33354 578999999997642 124444444443
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.87 E-value=5.4e-05 Score=66.34 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=79.1
Q ss_pred CcccccCcCCHH--------HHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLSTD--------ALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~~~--------~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
+||||+|.+... +++.|...+. .+..++|.+|+... .. +.+.+|+..+.+..|+.++...+++.
T Consensus 275 LfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 275 LVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred EEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 589999988542 4677777777 56677888888653 25 89999999999999999998877765
Q ss_pred HHH----HcCCCCCHHHHHHHHHHcCC---c---HHHHHHHHHHHHh
Q 042716 67 IAE----QEGIQLPHQLAEKIADNSKN---N---LRQAIRSFEASRQ 103 (137)
Q Consensus 67 i~~----~egi~i~~~~l~~i~~~~~g---d---~R~aln~L~~~~~ 103 (137)
+.. ..++.++++++..++..+.| | +++|+.+|+.+..
T Consensus 353 l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 353 LRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 443 35677999999998887764 3 7889999997653
No 154
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.87 E-value=6.9e-05 Score=59.71 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=64.6
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHhc-----cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLERY-----KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~~-----~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|+|||+|.+. ...+..+...+.+. ..++.+|++||.+..+ ++++. |+ ..+.|+.|+.++.
T Consensus 219 l~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r 298 (364)
T TIGR01242 219 IFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGR 298 (364)
T ss_pred EEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHH
Confidence 5899999983 23355566665442 2467799999999888 88874 65 5799999999999
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHcC----CcHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPH-QLAEKIADNSK----NNLRQAIRS 97 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~-~~l~~i~~~~~----gd~R~aln~ 97 (137)
..++...+.+.++ ++ -....++..+. +|++.+.+.
T Consensus 299 ~~Il~~~~~~~~l--~~~~~~~~la~~t~g~sg~dl~~l~~~ 338 (364)
T TIGR01242 299 LEILKIHTRKMKL--AEDVDLEAIAKMTEGASGADLKAICTE 338 (364)
T ss_pred HHHHHHHHhcCCC--CccCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999877655443 22 13455665554 366655443
No 155
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.84 E-value=0.00013 Score=60.45 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=65.5
Q ss_pred CcccccCcCCHH--------------HHHHHHHHHHhccC--CceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLSTD--------------ALLYMRWLLERYKG--LNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~--------------~~~~L~~~le~~~~--~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+... ..+.|+..|+.+.. +..+|.+||.+..+ +++++ |+ ..+.|+.|+.++.
T Consensus 151 l~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 151 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGR 230 (495)
T ss_pred EEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHH
Confidence 589999998532 23345555554433 34577778888889 99987 54 5799999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcC----CcHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSK----NNLRQAIR 96 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~----gd~R~aln 96 (137)
..+++..+.+.++. ++..+..++..+. +|++.+++
T Consensus 231 ~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 231 EEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred HHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHH
Confidence 99998877665543 3344667777654 45565555
No 156
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.81 E-value=3.4e-05 Score=67.88 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=76.1
Q ss_pred CcccccCcCCHH--------HHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLSTD--------ALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~~~--------~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
+||||+|.|.+. +++.|...++ .+...+|.+|+..+ .. +++++||+.+.+..|+.++....|+.
T Consensus 275 LfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~ 352 (857)
T PRK10865 275 LFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRG 352 (857)
T ss_pred EEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHH
Confidence 589999999643 5888888887 66777888887764 26 89999999999999999999998877
Q ss_pred HHHH----cCCCCCHHHHHHHHHHcC------CcHHHHHHHHHHHH
Q 042716 67 IAEQ----EGIQLPHQLAEKIADNSK------NNLRQAIRSFEASR 102 (137)
Q Consensus 67 i~~~----egi~i~~~~l~~i~~~~~------gd~R~aln~L~~~~ 102 (137)
+..+ .++.++++++...+..+. .=+.+|+.++....
T Consensus 353 l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aa 398 (857)
T PRK10865 353 LKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAA 398 (857)
T ss_pred HhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHh
Confidence 6543 367888888887655542 33456777776655
No 157
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.77 E-value=3.1e-05 Score=51.96 Aligned_cols=52 Identities=21% Similarity=0.184 Sum_probs=43.9
Q ss_pred CcccccCcCCHHH-----------HHHHHHHHHhccC---CceEEEEeCCCCCc-hhhh-hcce-eeEe
Q 042716 1 IILCEADKLSTDA-----------LLYMRWLLERYKG---LNKVFFCCSDVSKL-QPIK-SLCT-VIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~-----------~~~L~~~le~~~~---~~~~Il~~n~~~~i-~~l~-SRc~-~i~~ 52 (137)
++|||+|.+.... .+.|+..++.... ++.+|++||...++ ++++ +||. .++|
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEF 130 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEc
Confidence 5899999998876 8889999998776 36799999999999 9999 9985 4555
No 158
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.77 E-value=0.0003 Score=57.90 Aligned_cols=106 Identities=12% Similarity=0.135 Sum_probs=82.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcceeeEecCCCHH---
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCTVIQLLPPSKQ--- 58 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~~i~~~~~~~~--- 58 (137)
+|||||..|.-+.|..|++++++-. -++++|.+||.. .+. .+|..|.-++++.-|+-.
T Consensus 239 LfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~ 318 (464)
T COG2204 239 LFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERK 318 (464)
T ss_pred EEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccc
Confidence 5899999999999999999999642 246788888866 346 899999877666655543
Q ss_pred -HHH----HHHHHHHHHcCC---CCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhcCC
Q 042716 59 -EIV----EVLEFIAEQEGI---QLPHQLAEKIADN-SKNNLRQAIRSFEASRQMNY 106 (137)
Q Consensus 59 -~i~----~~l~~i~~~egi---~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~~~~ 106 (137)
||- ..+++.|++.|. .++++++..+..+ -.|++|.+-|.++.+.....
T Consensus 319 EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 319 EDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSE 375 (464)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCC
Confidence 333 345566666655 6889999998887 79999999999998887654
No 159
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.75 E-value=0.00069 Score=53.83 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=70.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC--C-Cc-hhhhhcce-eeEecCCCH-HHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV--S-KL-QPIKSLCT-VIQLLPPSK-QEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~--~-~i-~~l~SRc~-~i~~~~~~~-~~i~~~ 63 (137)
+++||++.|+...|..|+..|++.. ..++|++++... . .+ +++.+|+. .+.+..+++ ++-...
T Consensus 135 L~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eI 214 (337)
T TIGR02030 135 LYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEI 214 (337)
T ss_pred EEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHH
Confidence 4799999999999999999998632 134567666543 2 47 89999984 578887876 443444
Q ss_pred HHHHH-----------------------------HHcCCCCCHHHHHHHHHH---cCC-cHHHHHHHHHHHHh
Q 042716 64 LEFIA-----------------------------EQEGIQLPHQLAEKIADN---SKN-NLRQAIRSFEASRQ 103 (137)
Q Consensus 64 l~~i~-----------------------------~~egi~i~~~~l~~i~~~---~~g-d~R~aln~L~~~~~ 103 (137)
+.... .-.++.++++.+.+++.. .+. ++|..+.++..+..
T Consensus 215 L~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA 287 (337)
T TIGR02030 215 VERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKA 287 (337)
T ss_pred HHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 43311 113567888888887764 222 57888888876554
No 160
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.73 E-value=0.00045 Score=56.15 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=75.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcce--eeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCT--VIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~--~i~~~~~~~-- 57 (137)
++|||+|.|....|..|+.++++.. .++++|++++.. ..+ +.+..|+. .+.++|+..
T Consensus 241 l~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~ 320 (457)
T PRK11361 241 LLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRR 320 (457)
T ss_pred EEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhch
Confidence 5899999999999999999998532 246888888755 235 66777764 345555542
Q ss_pred HHHHHH----HHHHHHHcC---CCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhcC
Q 042716 58 QEIVEV----LEFIAEQEG---IQLPHQLAEKIADN-SKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 58 ~~i~~~----l~~i~~~eg---i~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~~~ 105 (137)
+++... +.+.+.+.| ..++++++..+..+ ..||+|.+-|.++.+....
T Consensus 321 ~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 321 EDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 344332 344444333 35899999999887 5999999999999877544
No 161
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.73 E-value=0.00034 Score=57.17 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=77.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcce--eeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCT--VIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~--~i~~~~~~~-- 57 (137)
++|||+|.|+...|..|++++++.. .++++|++++.. ..+ ++|..|+. .+.++|+.+
T Consensus 236 l~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~ 315 (469)
T PRK10923 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERR 315 (469)
T ss_pred EEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccch
Confidence 4899999999999999999998642 235899998765 246 88999974 566666554
Q ss_pred HHHHHHH----HHHHHHcCC---CCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhcC
Q 042716 58 QEIVEVL----EFIAEQEGI---QLPHQLAEKIADN-SKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 58 ~~i~~~l----~~i~~~egi---~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~~~ 105 (137)
+++...+ .+.+.+.|. .++++++..+..+ -.||+|.+-|.++.+....
T Consensus 316 ~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 316 EDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 3444443 333444443 4789999998887 7899999999999887643
No 162
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.72 E-value=0.00029 Score=57.10 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=66.3
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHHhc-----cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLST-----------DALLYMRWLLERY-----KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le~~-----~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|+|||+|.+.. ..+..+..++... ..++.+|++||.+..+ ++++. |+ ..+.|+.|+.++.
T Consensus 242 LfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R 321 (398)
T PTZ00454 242 IFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 321 (398)
T ss_pred EEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHH
Confidence 58999998732 2344555554432 2356699999999999 88764 65 5699999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSK-NNLRQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~-gd~R~aln~L~~~~ 102 (137)
..+++..+.+.++.-+ -.+..++..+. -+.+.+.++++.+.
T Consensus 322 ~~Il~~~~~~~~l~~d-vd~~~la~~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 322 RLIFQTITSKMNLSEE-VDLEDFVSRPEKISAADIAAICQEAG 363 (398)
T ss_pred HHHHHHHHhcCCCCcc-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999888777665422 23555665543 23444444444444
No 163
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.69 E-value=0.00037 Score=58.52 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=74.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC-------Cc-hhhhhcc--eeeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS-------KL-QPIKSLC--TVIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~-------~i-~~l~SRc--~~i~~~~~~~-- 57 (137)
+||||++.|....|..|++++++.. .++++|++|+..- .. ++|..|+ ..+.++|+.+
T Consensus 326 LfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~ 405 (538)
T PRK15424 326 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERV 405 (538)
T ss_pred EEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhch
Confidence 5899999999999999999998632 2457888887652 24 5777786 4566666655
Q ss_pred HHHHHHHHHH----HHHcCCCCCHHHH-------HHHHHH-cCCcHHHHHHHHHHHHhc
Q 042716 58 QEIVEVLEFI----AEQEGIQLPHQLA-------EKIADN-SKNNLRQAIRSFEASRQM 104 (137)
Q Consensus 58 ~~i~~~l~~i----~~~egi~i~~~~l-------~~i~~~-~~gd~R~aln~L~~~~~~ 104 (137)
+|+...+... +.+.+..++++++ ..+..+ -+||+|.+-|.++.+...
T Consensus 406 eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 406 ADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 4555444443 3446777888776 344443 689999999999987753
No 164
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.69 E-value=0.00031 Score=58.87 Aligned_cols=104 Identities=14% Similarity=0.054 Sum_probs=77.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC-------Cc-hhhhhcc--eeeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS-------KL-QPIKSLC--TVIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~-------~i-~~l~SRc--~~i~~~~~~~-- 57 (137)
+||||+|.|....|..|++++++.. .++++|++|+..- .+ ++|..|. ..+.++|+.+
T Consensus 311 LfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~ 390 (526)
T TIGR02329 311 LFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERP 390 (526)
T ss_pred EEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhch
Confidence 5899999999999999999998642 2347888887652 24 5777775 5677777766
Q ss_pred HHHHHH----HHHHHHHcCCCCCHHHHHH-------HHHH-cCCcHHHHHHHHHHHHhc
Q 042716 58 QEIVEV----LEFIAEQEGIQLPHQLAEK-------IADN-SKNNLRQAIRSFEASRQM 104 (137)
Q Consensus 58 ~~i~~~----l~~i~~~egi~i~~~~l~~-------i~~~-~~gd~R~aln~L~~~~~~ 104 (137)
+|+... |.+.+...++.++++++.. +..+ -+||+|.+-|.++.+...
T Consensus 391 eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 391 GDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 455444 3444445577899999887 6665 789999999999988753
No 165
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.67 E-value=0.0004 Score=56.02 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=66.4
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHhcc-----CCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLERYK-----GLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~~~-----~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+. .+.+..+..++.+.. .+..+|++||.+..+ ++++. |+ ..+.|++|+.++.
T Consensus 228 lfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R 307 (389)
T PRK03992 228 IFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGR 307 (389)
T ss_pred EEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHH
Confidence 5899999983 344566666664432 356799999999889 88874 66 5799999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc----CCcHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNS----KNNLRQAIRSF 98 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~----~gd~R~aln~L 98 (137)
..+++..+.+.++.- +-.+..++..+ .+|++.+.+..
T Consensus 308 ~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sgadl~~l~~eA 348 (389)
T PRK03992 308 LEILKIHTRKMNLAD-DVDLEELAELTEGASGADLKAICTEA 348 (389)
T ss_pred HHHHHHHhccCCCCC-cCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999988776544421 12345566554 35666554443
No 166
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.58 E-value=0.0011 Score=56.98 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=77.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC-------Cc-hhhhhcc--eeeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS-------KL-QPIKSLC--TVIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~-------~i-~~l~SRc--~~i~~~~~~~-- 57 (137)
++|||+|.|....|..|+.++++.. .++++|++++..- .+ +.|..|. ..+.++|+.+
T Consensus 474 L~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~ 553 (686)
T PRK15429 474 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERP 553 (686)
T ss_pred EEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhH
Confidence 5899999999999999999998632 3568888887652 24 5677775 4566666655
Q ss_pred HHHHHHH----HHHHHHcCC---CCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhcCC
Q 042716 58 QEIVEVL----EFIAEQEGI---QLPHQLAEKIADN-SKNNLRQAIRSFEASRQMNY 106 (137)
Q Consensus 58 ~~i~~~l----~~i~~~egi---~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~~~~ 106 (137)
+++-..+ .+.+.+.|. .++++++..+..+ -+||+|.+-|.++.+.....
T Consensus 554 ~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 554 EDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTR 610 (686)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCC
Confidence 3444333 344554453 4789999998876 78999999999998876443
No 167
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.58 E-value=0.00018 Score=62.30 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=60.4
Q ss_pred CcccccCcCCH------------HHHHHHHHHHHh--ccCCceEEEEeCCCCCc-hhhh--hcc-eeeEecCCCHHHHHH
Q 042716 1 IILCEADKLST------------DALLYMRWLLER--YKGLNKVFFCCSDVSKL-QPIK--SLC-TVIQLLPPSKQEIVE 62 (137)
Q Consensus 1 iiiDEid~l~~------------~~~~~L~~~le~--~~~~~~~Il~~n~~~~i-~~l~--SRc-~~i~~~~~~~~~i~~ 62 (137)
|||||+|.|.+ ...+.|+..|+. ...+..+|.+||.+..+ ++++ +|| ..+.|+.|+.++...
T Consensus 550 ifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~ 629 (733)
T TIGR01243 550 IFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKE 629 (733)
T ss_pred EEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHH
Confidence 58999998842 124556666763 23456688888999999 8887 588 679999999999888
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHcC
Q 042716 63 VLEFIAEQEGIQLPHQ-LAEKIADNSK 88 (137)
Q Consensus 63 ~l~~i~~~egi~i~~~-~l~~i~~~~~ 88 (137)
+++.... +..++++ .+..+++.+.
T Consensus 630 i~~~~~~--~~~~~~~~~l~~la~~t~ 654 (733)
T TIGR01243 630 IFKIHTR--SMPLAEDVDLEELAEMTE 654 (733)
T ss_pred HHHHHhc--CCCCCccCCHHHHHHHcC
Confidence 8876544 3444433 3667777654
No 168
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.56 E-value=0.00021 Score=59.36 Aligned_cols=97 Identities=18% Similarity=0.108 Sum_probs=67.3
Q ss_pred CcccccCcCCHH------------HHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHHHH
Q 042716 1 IILCEADKLSTD------------ALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~~~------------~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~~l 64 (137)
++|||+|.+... ..+.++..|.+......+|.+||++..+ ++++- |+ ..+.++.|+.++...++
T Consensus 322 L~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il 401 (489)
T CHL00195 322 LWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIF 401 (489)
T ss_pred EEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHH
Confidence 579999987431 1344566666555556688888999999 88864 77 67999999999999999
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHH----cCCcHHHHHHH
Q 042716 65 EFIAEQEGIQ-LPHQLAEKIADN----SKNNLRQAIRS 97 (137)
Q Consensus 65 ~~i~~~egi~-i~~~~l~~i~~~----~~gd~R~aln~ 97 (137)
+....+.+.. .++..+..++.. +++|++.++..
T Consensus 402 ~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 402 KIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred HHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 8888775432 234446666665 44566655543
No 169
>PHA02244 ATPase-like protein
Probab=97.56 E-value=0.00063 Score=54.69 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=49.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHh-----------ccCCceEEEEeCCC-----------CCc-hhhhhcceeeEecCCCH
Q 042716 1 IILCEADKLSTDALLYMRWLLER-----------YKGLNKVFFCCSDV-----------SKL-QPIKSLCTVIQLLPPSK 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~-----------~~~~~~~Il~~n~~-----------~~i-~~l~SRc~~i~~~~~~~ 57 (137)
++|||++.+.+..+..|...++. .+.++++|+++|.. ..+ +++++|+..+.|..|+.
T Consensus 184 LiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 184 FFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred EEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 58999999999999999999962 24678899999973 347 99999999999999874
Q ss_pred H
Q 042716 58 Q 58 (137)
Q Consensus 58 ~ 58 (137)
.
T Consensus 264 ~ 264 (383)
T PHA02244 264 I 264 (383)
T ss_pred H
Confidence 3
No 170
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54 E-value=0.00014 Score=48.69 Aligned_cols=53 Identities=19% Similarity=0.118 Sum_probs=44.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc------CCceEEEEeCCCC--Cc-hhhhhcc-eeeEec
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK------GLNKVFFCCSDVS--KL-QPIKSLC-TVIQLL 53 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~------~~~~~Il~~n~~~--~i-~~l~SRc-~~i~~~ 53 (137)
+++||+|.+....+..+...++... .++++|++++... .+ +.+++|| ..+.|.
T Consensus 88 lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 88 LFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred EEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 5899999998888889999888863 5778999999887 67 9999999 666664
No 171
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.52 E-value=0.00029 Score=56.71 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=65.2
Q ss_pred CcccccCcCCHH---------HH---HHHHHHHHh--------------ccCCceEEEEeCCCCCc-hhhhh--cceeeE
Q 042716 1 IILCEADKLSTD---------AL---LYMRWLLER--------------YKGLNKVFFCCSDVSKL-QPIKS--LCTVIQ 51 (137)
Q Consensus 1 iiiDEid~l~~~---------~~---~~L~~~le~--------------~~~~~~~Il~~n~~~~i-~~l~S--Rc~~i~ 51 (137)
|||||+|.+.+. .| ..|+..++. ....+++|.+||.++.| ++|+- |+-.+
T Consensus 216 LFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~- 294 (413)
T PLN00020 216 LFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF- 294 (413)
T ss_pred EEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce-
Confidence 589999988542 11 345555543 23457789999999999 99988 77543
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Q 042716 52 LLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNN 90 (137)
Q Consensus 52 ~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd 90 (137)
|..|+.++...+|+.+.++.++ +...+..++...+|-
T Consensus 295 i~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 295 YWAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQ 331 (413)
T ss_pred eCCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCC
Confidence 3479999999999988887765 578889999998875
No 172
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.50 E-value=0.00061 Score=55.92 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=62.8
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHHhc-----cCCceEEEEeCCCCCc-hhhh--hcc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLST-----------DALLYMRWLLERY-----KGLNKVFFCCSDVSKL-QPIK--SLC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le~~-----~~~~~~Il~~n~~~~i-~~l~--SRc-~~i~~~~~~~~~i 60 (137)
+||||+|.+.. +.+..++.++.+. ..+..+|++||.+..+ +.+. +|+ ..+.|+.|+.++.
T Consensus 280 LfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R 359 (438)
T PTZ00361 280 VFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTK 359 (438)
T ss_pred EeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHH
Confidence 58999998732 2345555555432 3467799999999999 8776 466 5799999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHH----cCCcHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQ-LAEKIADN----SKNNLRQAIR 96 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~-~l~~i~~~----~~gd~R~aln 96 (137)
..+++..+.+.++. ++ .+..++.. +..|++.++.
T Consensus 360 ~~Il~~~~~k~~l~--~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 360 RRIFEIHTSKMTLA--EDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred HHHHHHHHhcCCCC--cCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 99998877665543 22 24445533 4445555443
No 173
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.50 E-value=0.00062 Score=55.45 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=36.5
Q ss_pred hhhhhcc-eeeEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Q 042716 41 QPIKSLC-TVIQLLPPSKQEIVEVLE-----------FIAEQEGI--QLPHQLAEKIADNS 87 (137)
Q Consensus 41 ~~l~SRc-~~i~~~~~~~~~i~~~l~-----------~i~~~egi--~i~~~~l~~i~~~~ 87 (137)
|.+..|+ .++.|++++.+++..++. .....+|+ .++++++.+|++.+
T Consensus 297 PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 297 PEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred HHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 6777787 678999999999888886 22234454 58899999999874
No 174
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.36 E-value=0.00082 Score=57.59 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=70.6
Q ss_pred CcccccCcCCHH--------------HHHHHHHHHHhccCC--ceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLSTD--------------ALLYMRWLLERYKGL--NKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~--------------~~~~L~~~le~~~~~--~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+... ..+.|+..|+.+..+ +.+|.+||.+..+ ++++. |+ ..+.|+.|+.++.
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 589999998431 234555556654443 4577788888889 88773 77 6899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSKN----NLRQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~g----d~R~aln~L~~~~ 102 (137)
..+++....+..+.- +-.+..+++.+.| |+..+++......
T Consensus 328 ~~Il~~~~~~~~l~~-~~d~~~la~~t~G~sgadl~~l~~eAa~~a 372 (644)
T PRK10733 328 EQILKVHMRRVPLAP-DIDAAIIARGTPGFSGADLANLVNEAALFA 372 (644)
T ss_pred HHHHHHHhhcCCCCC-cCCHHHHHhhCCCCCHHHHHHHHHHHHHHH
Confidence 999888776554321 1235668888887 8888887766544
No 175
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.34 E-value=0.0034 Score=49.88 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=70.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC---Cc-hhhhhcce-eeEecCCCH-HHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS---KL-QPIKSLCT-VIQLLPPSK-QEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~---~i-~~l~SRc~-~i~~~~~~~-~~i~~~ 63 (137)
+++||++.+++..|++|+..|++.. ...+|++++...+ .+ +++..|+. .+.+.++++ ++-...
T Consensus 132 L~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~i 211 (334)
T PRK13407 132 LYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEV 211 (334)
T ss_pred EEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHH
Confidence 5799999999999999999998642 2345777765442 47 89999984 577777766 443333
Q ss_pred HHHHH-----------------------------HHcCCCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Q 042716 64 LEFIA-----------------------------EQEGIQLPHQLAEKIADNS----KNNLRQAIRSFEASRQ 103 (137)
Q Consensus 64 l~~i~-----------------------------~~egi~i~~~~l~~i~~~~----~gd~R~aln~L~~~~~ 103 (137)
+.... .-.++.++++.+.++++.+ ...+|..+.++..+..
T Consensus 212 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a 284 (334)
T PRK13407 212 IRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARA 284 (334)
T ss_pred HHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 33211 1134678999888877652 2468888887765543
No 176
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.24 E-value=0.00052 Score=56.06 Aligned_cols=102 Identities=16% Similarity=0.254 Sum_probs=72.5
Q ss_pred CcccccCcCCHH------------HHHHHHHHHHhcc--------CCceEEEEeC------CCCCc-hhhhhcc-eeeEe
Q 042716 1 IILCEADKLSTD------------ALLYMRWLLERYK--------GLNKVFFCCS------DVSKL-QPIKSLC-TVIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~------------~~~~L~~~le~~~--------~~~~~Il~~n------~~~~i-~~l~SRc-~~i~~ 52 (137)
|||||+|.+... .|++|++++|-.. .+..+.|+|. .++.+ |-|.-|. .++.+
T Consensus 251 VfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L 330 (441)
T TIGR00390 251 IFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVEL 330 (441)
T ss_pred EEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEEC
Confidence 689999999532 4999999999421 1233455543 23447 9999999 57999
Q ss_pred cCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHH
Q 042716 53 LPPSKQEIVEVLE-----------FIAEQEGI--QLPHQLAEKIADNS--------KNNLRQAIRSFEASR 102 (137)
Q Consensus 53 ~~~~~~~i~~~l~-----------~i~~~egi--~i~~~~l~~i~~~~--------~gd~R~aln~L~~~~ 102 (137)
.+++.+++..+|. ...+.+|+ .++++++..|++.+ +--.|.+-..++.+-
T Consensus 331 ~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 9999999998872 23356676 46899999999875 444666666666544
No 177
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.23 E-value=0.00073 Score=55.21 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=72.8
Q ss_pred CcccccCcCCH------------HHHHHHHHHHHhcc--------CCceEEEEeCC------CCCc-hhhhhcc-eeeEe
Q 042716 1 IILCEADKLST------------DALLYMRWLLERYK--------GLNKVFFCCSD------VSKL-QPIKSLC-TVIQL 52 (137)
Q Consensus 1 iiiDEid~l~~------------~~~~~L~~~le~~~--------~~~~~Il~~n~------~~~i-~~l~SRc-~~i~~ 52 (137)
|||||+|.+.. +.|++|++++|-.. .+..++|+|.- ++.+ |.|.-|. .++.+
T Consensus 253 VfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L 332 (443)
T PRK05201 253 VFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVEL 332 (443)
T ss_pred EEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEEC
Confidence 68999999942 35999999999522 12335555532 3347 9999999 57999
Q ss_pred cCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHH
Q 042716 53 LPPSKQEIVEVLE-----------FIAEQEGI--QLPHQLAEKIADNS--------KNNLRQAIRSFEASR 102 (137)
Q Consensus 53 ~~~~~~~i~~~l~-----------~i~~~egi--~i~~~~l~~i~~~~--------~gd~R~aln~L~~~~ 102 (137)
.+++.+++..+|. ...+.+|+ .++++++..|++.+ +--.|.+-..++.+-
T Consensus 333 ~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 333 DALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 9999999998883 23455676 57799999999875 334666666666554
No 178
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.21 E-value=0.00079 Score=56.22 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=55.3
Q ss_pred CcccccCcCCHH------------HHHHHHHHHHhcc--CCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHH
Q 042716 1 IILCEADKLSTD------------ALLYMRWLLERYK--GLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVE 62 (137)
Q Consensus 1 iiiDEid~l~~~------------~~~~L~~~le~~~--~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~ 62 (137)
|||||+|.+... ..+.|+..|+... .+..+|.+||.+..| ++|+. |+ ..+.|++|+.++...
T Consensus 293 IfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~ 372 (512)
T TIGR03689 293 VFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAAD 372 (512)
T ss_pred EEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHH
Confidence 589999998432 1245666665433 356688888999999 99986 76 469999999999999
Q ss_pred HHHHHHHHcCCCCCH
Q 042716 63 VLEFIAEQEGIQLPH 77 (137)
Q Consensus 63 ~l~~i~~~egi~i~~ 77 (137)
+++..... .+.+++
T Consensus 373 Il~~~l~~-~l~l~~ 386 (512)
T TIGR03689 373 IFSKYLTD-SLPLDA 386 (512)
T ss_pred HHHHHhhc-cCCchH
Confidence 99887654 455543
No 179
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.21 E-value=0.0026 Score=50.85 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=72.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC---Cc-hhhhhcc-eeeEecCCCH-HHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS---KL-QPIKSLC-TVIQLLPPSK-QEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~---~i-~~l~SRc-~~i~~~~~~~-~~i~~~ 63 (137)
+++||++.|++..|..|+..|++.. ...+|+++++..+ .+ +.+..|+ ..+.+..|+. ++-...
T Consensus 148 L~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 148 LYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred EEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHH
Confidence 5799999999999999999998621 2356777776552 47 9999998 4688888874 444344
Q ss_pred HHHHH-----------------------------HHcCCCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHh
Q 042716 64 LEFIA-----------------------------EQEGIQLPHQLAEKIADNS---K-NNLRQAIRSFEASRQ 103 (137)
Q Consensus 64 l~~i~-----------------------------~~egi~i~~~~l~~i~~~~---~-gd~R~aln~L~~~~~ 103 (137)
+++.. .-.++.++++.+.++++.+ + .++|..+.+++.+..
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA 300 (350)
T CHL00081 228 VEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKA 300 (350)
T ss_pred HHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHH
Confidence 33211 1135778999988877653 2 368998888876654
No 180
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.19 E-value=0.0016 Score=55.92 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=78.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-CCce--EEEEeCCCC---C-c-hhhhhcc--eeeEecCCCHHHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-GLNK--VFFCCSDVS---K-L-QPIKSLC--TVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-~~~~--~Il~~n~~~---~-i-~~l~SRc--~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
|+|||.|.|-...|..|+-+.+=|. ++.+ +|.++|... + + ..+-||. ..+.|.|++.+|+..++.....-
T Consensus 512 vLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 512 VLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred EEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcc
Confidence 5799999999999999999888654 2333 555566654 3 3 6777885 78999999999988887654432
Q ss_pred cCCCCCHHHHHHHHHH---cCCcHHHHHHHHHHHHhcCC
Q 042716 71 EGIQLPHQLAEKIADN---SKNNLRQAIRSFEASRQMNY 106 (137)
Q Consensus 71 egi~i~~~~l~~i~~~---~~gd~R~aln~L~~~~~~~~ 106 (137)
- -.++.++++.+++. -.||.|+|+..+..+..-..
T Consensus 592 ~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~ 629 (767)
T KOG1514|consen 592 L-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAE 629 (767)
T ss_pred h-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 2 24567777777664 46999999999998876443
No 181
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.18 E-value=0.0016 Score=53.14 Aligned_cols=48 Identities=10% Similarity=0.234 Sum_probs=36.6
Q ss_pred c-hhhhhcc-eeeEecCCCHHHHHHHHHH----HHH-------HcCC--CCCHHHHHHHHHHc
Q 042716 40 L-QPIKSLC-TVIQLLPPSKQEIVEVLEF----IAE-------QEGI--QLPHQLAEKIADNS 87 (137)
Q Consensus 40 i-~~l~SRc-~~i~~~~~~~~~i~~~l~~----i~~-------~egi--~i~~~~l~~i~~~~ 87 (137)
+ |.+..|+ .++.|.+++.+++..++.. +.+ .+|+ .++++++.+|++.+
T Consensus 301 ~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 301 LIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred hHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 5 7888888 6789999999998888754 121 2244 57899999999874
No 182
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0022 Score=51.38 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=63.8
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHhc-----cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLERY-----KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~~-----~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+. .+-|.-++.++.+. .+++.+|++||-+.-+ |+|.- |. ..+.|+.|+.+.-
T Consensus 248 IFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR 327 (406)
T COG1222 248 IFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGR 327 (406)
T ss_pred EEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHH
Confidence 6899999983 23488888888775 3578899999999999 88765 44 6799999999988
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHHcC
Q 042716 61 VEVLEFIAEQEGIQ--LPHQLAEKIADNSK 88 (137)
Q Consensus 61 ~~~l~~i~~~egi~--i~~~~l~~i~~~~~ 88 (137)
..+++-.+.+.++. ++ ++.++..++
T Consensus 328 ~~Il~IHtrkM~l~~dvd---~e~la~~~~ 354 (406)
T COG1222 328 AEILKIHTRKMNLADDVD---LELLARLTE 354 (406)
T ss_pred HHHHHHHhhhccCccCcC---HHHHHHhcC
Confidence 88888877776653 33 444555433
No 183
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.99 E-value=0.0083 Score=51.41 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=65.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCC-CCc-hhhhhcce-eeEecCCCH-HHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDV-SKL-QPIKSLCT-VIQLLPPSK-QEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~-~~i-~~l~SRc~-~i~~~~~~~-~~i~~~ 63 (137)
++|||++.|+...|+.|+..|++.. ..+.+|.++|-. ..+ ++|.+|+. .+.+..+.. ++....
T Consensus 130 L~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 130 LYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred EEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHH
Confidence 5899999999999999999998541 123344444422 247 89999983 466666653 332222
Q ss_pred HHHH-------------------------H----HHcCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHH
Q 042716 64 LEFI-------------------------A----EQEGIQLPHQLAEKIADNS---KN-NLRQAIRSFEASR 102 (137)
Q Consensus 64 l~~i-------------------------~----~~egi~i~~~~l~~i~~~~---~g-d~R~aln~L~~~~ 102 (137)
+... + ....+.++++++.+++..+ +- .+|..+.+++.+.
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ar 281 (633)
T TIGR02442 210 IRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAAR 281 (633)
T ss_pred HHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 2211 0 1125788988888887764 22 4788887777654
No 184
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.94 E-value=0.0064 Score=50.76 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=48.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCCC-------------Cc-hhhhhcc-eeeEe
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDVS-------------KL-QPIKSLC-TVIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~~-------------~i-~~l~SRc-~~i~~ 52 (137)
++|||+|.|....|.+|+..||+.. ..+++|.++|... .+ +++.||+ .++.+
T Consensus 304 l~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~ 383 (509)
T smart00350 304 CCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVV 383 (509)
T ss_pred EEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEe
Confidence 4799999999999999999998643 3466777777542 47 9999999 55444
Q ss_pred -cCCCHHHHHHHHHHH
Q 042716 53 -LPPSKQEIVEVLEFI 67 (137)
Q Consensus 53 -~~~~~~~i~~~l~~i 67 (137)
..++.+.-...+.++
T Consensus 384 ~d~~~~~~d~~i~~~i 399 (509)
T smart00350 384 LDEVDEERDRELAKHV 399 (509)
T ss_pred cCCCChHHHHHHHHHH
Confidence 455555444444443
No 185
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.94 E-value=0.011 Score=50.25 Aligned_cols=127 Identities=10% Similarity=0.035 Sum_probs=76.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCCC---Cc-hhhhhccee-eEecCC-CHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDVS---KL-QPIKSLCTV-IQLLPP-SKQEIV 61 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~~---~i-~~l~SRc~~-i~~~~~-~~~~i~ 61 (137)
+++||++.+++..|+.|+..|++.. ..+++|.++|... .+ ++|..|+.+ +.+..+ +.++-.
T Consensus 88 L~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~ 167 (589)
T TIGR02031 88 LYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRV 167 (589)
T ss_pred EeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHH
Confidence 5899999999999999999998643 2345665555443 57 999999843 444443 333323
Q ss_pred HHHHHH---------------------H--HHcCCCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHhcCCCcccCccc
Q 042716 62 EVLEFI---------------------A--EQEGIQLPHQLAEKIADNS---K-NNLRQAIRSFEASRQMNYPFVEGQVI 114 (137)
Q Consensus 62 ~~l~~i---------------------~--~~egi~i~~~~l~~i~~~~---~-gd~R~aln~L~~~~~~~~~~~~~~~~ 114 (137)
.++... + ....+.++++.+.+++..+ + ..+|..+.+++.+..... +.....
T Consensus 168 eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aa-l~gr~~- 245 (589)
T TIGR02031 168 EIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAA-LHGRTE- 245 (589)
T ss_pred HHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-HhCCCC-
Confidence 333221 1 1235788999888877652 2 247888877775543210 000000
Q ss_pred cCCcHHHHHHHHHHHHh
Q 042716 115 LTGWEDDITNIATKIIE 131 (137)
Q Consensus 115 ~~~~~~~~~~i~~~i~~ 131 (137)
--++++...+..++.
T Consensus 246 --V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 246 --VTEEDLKLAVELVLL 260 (589)
T ss_pred --CCHHHHHHHHHHHhh
Confidence 125666666666663
No 186
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.92 E-value=0.0089 Score=49.74 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=80.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcceeeEecCCCHH---
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCTVIQLLPPSKQ--- 58 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~~i~~~~~~~~--- 58 (137)
+|+|||-.|....|-.|++++-+.. -.+++|.+||-. .+. .+|.-|.-+|++.-|+--
T Consensus 321 LFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~ 400 (550)
T COG3604 321 LFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERP 400 (550)
T ss_pred EechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCC
Confidence 5899999999999999999997642 246789999854 356 788888887777666543
Q ss_pred -HH----HHHHHHHHHHcCC---CCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhcC
Q 042716 59 -EI----VEVLEFIAEQEGI---QLPHQLAEKIADN-SKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 59 -~i----~~~l~~i~~~egi---~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~~~ 105 (137)
++ ...+++...+.|. .+++++++.+.++ ..|+.|..-|.++..+...
T Consensus 401 ~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 401 EDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred ccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 22 2334555555555 7899999999987 8999999999999888744
No 187
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.89 E-value=0.007 Score=51.66 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=70.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc---------------------CCceEEEEeCCC--CCc-hhhhhcce----eeEe
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK---------------------GLNKVFFCCSDV--SKL-QPIKSLCT----VIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~---------------------~~~~~Il~~n~~--~~i-~~l~SRc~----~i~~ 52 (137)
++|||++.|....|..|++.+++.. .++++|+++|.. ..+ +++++|+. .+.|
T Consensus 221 L~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~ 300 (608)
T TIGR00764 221 LYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGYEVYM 300 (608)
T ss_pred EEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEe
Confidence 5799999999999999999997531 234577777754 568 99999986 2344
Q ss_pred c---CCCHHH---HHHHHHHHHHHcC-C-CCCHHHHHHHHHHcC----------CcHHHHHHHHHHH
Q 042716 53 L---PPSKQE---IVEVLEFIAEQEG-I-QLPHQLAEKIADNSK----------NNLRQAIRSFEAS 101 (137)
Q Consensus 53 ~---~~~~~~---i~~~l~~i~~~eg-i-~i~~~~l~~i~~~~~----------gd~R~aln~L~~~ 101 (137)
+ +.+.+. +..++.+.+++.| + .++++++..+++.+. .+.|.+-++++.+
T Consensus 301 ~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 301 KDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred eccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 3 223333 3455555566664 3 589999999986432 3578888888766
No 188
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.85 E-value=0.00061 Score=46.62 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=36.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-------------C------CceEEEEeCCCC----Cc-hhhhhcc
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-------------G------LNKVFFCCSDVS----KL-QPIKSLC 47 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-------------~------~~~~Il~~n~~~----~i-~~l~SRc 47 (137)
++|||++...++.+++|+.++++-. . +.++|.++|... .+ ++++|||
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred EEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 5899999999999999999998642 1 268899999887 68 9999997
No 189
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.76 E-value=0.0063 Score=52.87 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=62.2
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHHhccCCc--eEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLST-----------DALLYMRWLLERYKGLN--KVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le~~~~~~--~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~~ 63 (137)
++|||+|.+.+ ..++.|+..++...... .+|.+||.+..+ ++++. |+ ..+.|..|+.++...+
T Consensus 275 l~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~I 354 (733)
T TIGR01243 275 IFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEI 354 (733)
T ss_pred EEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHH
Confidence 58999998843 34677888887654433 355577888889 88876 55 5789999999998888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHcCCcH
Q 042716 64 LEFIAEQEGIQLP-HQLAEKIADNSKNNL 91 (137)
Q Consensus 64 l~~i~~~egi~i~-~~~l~~i~~~~~gd~ 91 (137)
++... .++.+. +..+..++..+.|-.
T Consensus 355 l~~~~--~~~~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 355 LKVHT--RNMPLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred HHHHh--cCCCCccccCHHHHHHhCCCCC
Confidence 87544 344443 334677777776643
No 190
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.75 E-value=0.0061 Score=48.29 Aligned_cols=134 Identities=13% Similarity=0.149 Sum_probs=81.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHh--------------ccCCceEEEEeCCCC------------Cc-hhhhhcce-eeEe
Q 042716 1 IILCEADKLSTDALLYMRWLLER--------------YKGLNKVFFCCSDVS------------KL-QPIKSLCT-VIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~--------------~~~~~~~Il~~n~~~------------~i-~~l~SRc~-~i~~ 52 (137)
+++||+|...++.+.+|..++|. +++..++|.|+|... .+ .+.++|+. ++.+
T Consensus 138 lllDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~ 217 (327)
T TIGR01650 138 LCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTL 217 (327)
T ss_pred EEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeC
Confidence 47999999999999999999983 123455677777632 36 89999996 4689
Q ss_pred cCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH---cCC-----------cHHHHHHHHHHHHhcCCCcccCcccc-
Q 042716 53 LPPSKQEIVEVLEFIAEQEGIQ--LPHQLAEKIADN---SKN-----------NLRQAIRSFEASRQMNYPFVEGQVIL- 115 (137)
Q Consensus 53 ~~~~~~~i~~~l~~i~~~egi~--i~~~~l~~i~~~---~~g-----------d~R~aln~L~~~~~~~~~~~~~~~~~- 115 (137)
..|+.++=.++|...+ .++. .++..++++++. ... ++|..+...+.....+.++...-..+
T Consensus 218 ~Yp~~e~E~~Il~~~~--~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~f~~~~~~a~~~~~ 295 (327)
T TIGR01650 218 NYLEHDNEAAIVLAKA--KGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEIFDHDIALAFRLTF 295 (327)
T ss_pred CCCCHHHHHHHHHhhc--cCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHhhCccHHHHHHHHH
Confidence 9999988777776533 2222 123455554433 222 56666666655443221111111111
Q ss_pred ---CC--cHHHHHHHHHHHHhcCCCC
Q 042716 116 ---TG--WEDDITNIATKIIEEQSPK 136 (137)
Q Consensus 116 ---~~--~~~~~~~i~~~i~~~~~~~ 136 (137)
.+ -+.-+.++.+.++..+-|+
T Consensus 296 ~n~~~~~er~~~~e~~q~~f~~~~~~ 321 (327)
T TIGR01650 296 LNKCDELERPTVAEFFQRAFGEDLPE 321 (327)
T ss_pred HhcCCHHHHHHHHHHHHHHcCCCCcc
Confidence 11 2344668888888776553
No 191
>PF13173 AAA_14: AAA domain
Probab=96.73 E-value=0.0022 Score=43.55 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=47.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCC----c-hhhhhcceeeEecCCCHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK----L-QPIKSLCTVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~----i-~~l~SRc~~i~~~~~~~~~i 60 (137)
+||||+|.+. +....+..+.+.. .+..|++++..... . ..+..|...+++.|++-.|.
T Consensus 65 i~iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 65 IFIDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 5899999996 6888888888855 57889999887743 4 67888999999999998764
No 192
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=96.70 E-value=0.017 Score=48.41 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=76.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcceeeEecCCCH----
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCTVIQLLPPSK---- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~~i~~~~~~~---- 57 (137)
+|+||+-.|...-|..|++++.+-. -..|+|-+||.. ... .+|.-|.-++++.=|+-
T Consensus 344 LFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~ 423 (560)
T COG3829 344 LFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERK 423 (560)
T ss_pred EEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCc
Confidence 6899999999999999999998742 256789999876 236 78888886655544442
Q ss_pred HHHHHH----HHHHHHHcCC--C-CCHHHHHHHHHH-cCCcHHHHHHHHHHHHh
Q 042716 58 QEIVEV----LEFIAEQEGI--Q-LPHQLAEKIADN-SKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 58 ~~i~~~----l~~i~~~egi--~-i~~~~l~~i~~~-~~gd~R~aln~L~~~~~ 103 (137)
+|+... |.+..++.|- . ++++++..+.++ -+|++|.+-|+++.+..
T Consensus 424 eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 424 EDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred chHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 344333 3444455554 3 789999998886 78999999999998874
No 193
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.63 E-value=0.025 Score=49.65 Aligned_cols=98 Identities=7% Similarity=0.083 Sum_probs=73.6
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCCCc--hhhhhcceeeEec----CCCHHHHHHHHHHHHHHcCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVSKL--QPIKSLCTVIQLL----PPSKQEIVEVLEFIAEQEGI 73 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~~i--~~l~SRc~~i~~~----~~~~~~i~~~l~~i~~~egi 73 (137)
++|||+|.+.... ...|..++...+.+..+|+++...+.+ ..++-+-..+.+. +.+.++....+.. ..|.
T Consensus 125 lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~---~~~~ 201 (903)
T PRK04841 125 LVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQ---RLSS 201 (903)
T ss_pred EEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHh---ccCC
Confidence 5899999997555 557888888878888998988876554 4555444445555 8899999888754 3577
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 74 QLPHQLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 74 ~i~~~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
.++++.+..+.+.++|.+-.+--.....
T Consensus 202 ~~~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 202 PIEAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred CCCHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 8999999999999999997665444333
No 194
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.62 E-value=0.012 Score=50.63 Aligned_cols=102 Identities=11% Similarity=0.116 Sum_probs=70.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc---------------------CCceEEEEeCCC--CCc-hhhhhcce----eeEe
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK---------------------GLNKVFFCCSDV--SKL-QPIKSLCT----VIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~---------------------~~~~~Il~~n~~--~~i-~~l~SRc~----~i~~ 52 (137)
++|||++.|.+..|..|++.+++.. -++++|+++|.. +.+ ++|++|+. .+.|
T Consensus 230 L~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f 309 (637)
T PRK13765 230 LFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYEVYM 309 (637)
T ss_pred EEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEEEEc
Confidence 5899999999999999999996432 134688888765 347 99999984 3556
Q ss_pred cCC---CHHHHHHHHHHHHHH---c--CCCCCHHHHHHHHHHcC---Cc-------HHHHHHHHHHHH
Q 042716 53 LPP---SKQEIVEVLEFIAEQ---E--GIQLPHQLAEKIADNSK---NN-------LRQAIRSFEASR 102 (137)
Q Consensus 53 ~~~---~~~~i~~~l~~i~~~---e--gi~i~~~~l~~i~~~~~---gd-------~R~aln~L~~~~ 102 (137)
+.- +.+....++..+++. + -..++++++..+++++. |+ .|.+-++++.+.
T Consensus 310 ~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~ 377 (637)
T PRK13765 310 RDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAG 377 (637)
T ss_pred ccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHH
Confidence 532 345566666655543 2 23689999999987532 33 667777766543
No 195
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.60 E-value=0.005 Score=51.39 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=46.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCC-----------------------CCc-hhh
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDV-----------------------SKL-QPI 43 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~-----------------------~~i-~~l 43 (137)
+||||++.+.+..|+.|+..||... .++++|.++|.- .++ .+|
T Consensus 299 LfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pl 378 (499)
T TIGR00368 299 LFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPF 378 (499)
T ss_pred EecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhH
Confidence 5899999999999999999998642 356788888742 158 999
Q ss_pred hhcc-eeeEecCCCHHH
Q 042716 44 KSLC-TVIQLLPPSKQE 59 (137)
Q Consensus 44 ~SRc-~~i~~~~~~~~~ 59 (137)
++|+ ..+.+++++.++
T Consensus 379 lDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 379 LDRIDLSVEVPLLPPEK 395 (499)
T ss_pred HhhCCEEEEEcCCCHHH
Confidence 9998 567887775543
No 196
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.54 E-value=0.018 Score=48.84 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=77.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc----C------CceEEEEeCCC-------CCc-hhhhhcc--eeeEecCCCHH-H
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK----G------LNKVFFCCSDV-------SKL-QPIKSLC--TVIQLLPPSKQ-E 59 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~----~------~~~~Il~~n~~-------~~i-~~l~SRc--~~i~~~~~~~~-~ 59 (137)
+|+||+-.|.-+.|..|++++++-. + ..++|-+|+.. .+. .+|.-|. .++.++|+.+- +
T Consensus 411 lFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d 490 (606)
T COG3284 411 LFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSD 490 (606)
T ss_pred cHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccc
Confidence 5899999999999999999999742 1 23466666543 346 7888887 45666555442 3
Q ss_pred HHHHHHHHHHHc---CCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHHhcCC
Q 042716 60 IVEVLEFIAEQE---GIQLPHQLAEKIADN-SKNNLRQAIRSFEASRQMNY 106 (137)
Q Consensus 60 i~~~l~~i~~~e---gi~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~~~~ 106 (137)
-...|.++..++ .+.++++++..+..+ -.|++|.+.|.++.++...+
T Consensus 491 ~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~ 541 (606)
T COG3284 491 RIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSD 541 (606)
T ss_pred cHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Confidence 344455555544 478999999997664 89999999999999987654
No 197
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.003 Score=50.59 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=56.5
Q ss_pred CcccccCcCCHHH----HHHHHHHHHhc---------cCCce-EEE-EeCCCCCc-hhhhhcc-eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLSTDA----LLYMRWLLERY---------KGLNK-VFF-CCSDVSKL-QPIKSLC-TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~~----~~~L~~~le~~---------~~~~~-~Il-~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i~~~ 63 (137)
|||||+|.+...- -++-..+-.++ ..+.+ +|+ +||.+..+ .++.+|. ..|.+.-|+..+-.++
T Consensus 190 IFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kI 269 (386)
T KOG0737|consen 190 IFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKI 269 (386)
T ss_pred eehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHH
Confidence 6899999986321 11111111112 12323 444 45666779 9999994 7899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcC
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADNSK 88 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~~~ 88 (137)
|+-+.++|.++ ++=.+..+++.++
T Consensus 270 LkviLk~e~~e-~~vD~~~iA~~t~ 293 (386)
T KOG0737|consen 270 LKVILKKEKLE-DDVDLDEIAQMTE 293 (386)
T ss_pred HHHHhcccccC-cccCHHHHHHhcC
Confidence 99999999885 2223555555544
No 198
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.40 E-value=0.01 Score=56.19 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=58.1
Q ss_pred CcccccCcCCHHH-----HHHHHHHHHhc-----cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLSTDA-----LLYMRWLLERY-----KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~~~~-----~~~L~~~le~~-----~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~~l~~ 66 (137)
|+|||+|.+.... .+.|+..|... ..++.+|.+||.+..| |+|+. |. ..+.++.|+..+-.+.+..
T Consensus 1736 IFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~I 1815 (2281)
T CHL00206 1736 IWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFT 1815 (2281)
T ss_pred EEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHH
Confidence 5899999997653 34555666422 1234466667777888 99997 76 6788888887766666654
Q ss_pred HHHHcCCCCCHH--HHHHHHHHcC
Q 042716 67 IAEQEGIQLPHQ--LAEKIADNSK 88 (137)
Q Consensus 67 i~~~egi~i~~~--~l~~i~~~~~ 88 (137)
.....|+.+.++ .+..+++.+.
T Consensus 1816 Ll~tkg~~L~~~~vdl~~LA~~T~ 1839 (2281)
T CHL00206 1816 LSYTRGFHLEKKMFHTNGFGSITM 1839 (2281)
T ss_pred HHhhcCCCCCcccccHHHHHHhCC
Confidence 445556666543 2566777653
No 199
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.35 E-value=0.0045 Score=44.49 Aligned_cols=39 Identities=18% Similarity=0.042 Sum_probs=32.1
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHHhcc-----------CCceEEEEeCCCCC
Q 042716 1 IILCEADKLST-----------DALLYMRWLLERYK-----------GLNKVFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le~~~-----------~~~~~Il~~n~~~~ 39 (137)
|++||+|+.++ +.|++|++++|+-. .++.||+|+|-...
T Consensus 72 VllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 72 VLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp EEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred hhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 58999999999 99999999999642 35668888886654
No 200
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.34 E-value=0.035 Score=46.26 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=67.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc---------CCceEEEEeCC-CC---Cc-hhhhhcce-eeEecCCCH-HHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK---------GLNKVFFCCSD-VS---KL-QPIKSLCT-VIQLLPPSK-QEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~---------~~~~~Il~~n~-~~---~i-~~l~SRc~-~i~~~~~~~-~~i~~~l 64 (137)
+|+||++.+++..|++|+..|++-. -..+|+++|++ .+ .. +++..|+. .+.+++|++ ++....|
T Consensus 111 LfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL 190 (498)
T PRK13531 111 VFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSML 190 (498)
T ss_pred EeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHH
Confidence 5899999999999999999996533 23456665553 33 13 68999985 488888874 4434444
Q ss_pred HHH-----------------------HHHcCCCCCHHHHHHHHHHcC----------CcHHHHHHHHHHHH
Q 042716 65 EFI-----------------------AEQEGIQLPHQLAEKIADNSK----------NNLRQAIRSFEASR 102 (137)
Q Consensus 65 ~~i-----------------------~~~egi~i~~~~l~~i~~~~~----------gd~R~aln~L~~~~ 102 (137)
... ..-..+.+++.+.++|.+... -+.|..+.++..+.
T Consensus 191 ~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~ak 261 (498)
T PRK13531 191 TSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQ 261 (498)
T ss_pred HcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHH
Confidence 321 112456788888888766531 35677776665443
No 201
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.29 E-value=0.0054 Score=43.96 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=38.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-----------cCCceEEEEeCCC-------CCc-hhhhhcceeeEe
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-----------KGLNKVFFCCSDV-------SKL-QPIKSLCTVIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-----------~~~~~~Il~~n~~-------~~i-~~l~SRc~~i~~ 52 (137)
++|||++.|+...|..|++++++. +.++++|++|+.. ..+ ++|.-|..++++
T Consensus 97 L~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL~~~~i 167 (168)
T PF00158_consen 97 LFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRLNVFTI 167 (168)
T ss_dssp EEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTTEEE
T ss_pred EeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCChHHHHHHhceEec
Confidence 589999999999999999999964 2367899999866 245 778777765554
No 202
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.28 E-value=0.16 Score=43.35 Aligned_cols=127 Identities=12% Similarity=0.128 Sum_probs=82.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCC-----------ceEEEEeCCCC-----Cc-hhhhhcc-eeeEecCCCHHHHH-
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGL-----------NKVFFCCSDVS-----KL-QPIKSLC-TVIQLLPPSKQEIV- 61 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~-----------~~~Il~~n~~~-----~i-~~l~SRc-~~i~~~~~~~~~i~- 61 (137)
+++||+..+.+..+.+|+..||+-.-. .+|++++.+.. ++ +++..|+ ..+.+..++..+..
T Consensus 97 L~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~ 176 (584)
T PRK13406 97 LVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDARE 176 (584)
T ss_pred EEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcc
Confidence 589999999999999999999964211 35888875433 48 8999998 56888888766532
Q ss_pred ------HHHHHHHHHcCCCCCHHHHHHHHHH---cCC-cHHHHHHHHHHHHhcCCCcccCccccCCcHHHHHHHHHHHHh
Q 042716 62 ------EVLEFIAEQEGIQLPHQLAEKIADN---SKN-NLRQAIRSFEASRQMNYPFVEGQVILTGWEDDITNIATKIIE 131 (137)
Q Consensus 62 ------~~l~~i~~~egi~i~~~~l~~i~~~---~~g-d~R~aln~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 131 (137)
.++.....-.++.++++.+.+++.. .+- ++|..+.++..+..... +.....+ -++++.+.+..+|.
T Consensus 177 ~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~Aa-L~Gr~~V---~~~dv~~Aa~lvL~ 252 (584)
T PRK13406 177 IPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAA-LAGRTAV---EEEDLALAARLVLA 252 (584)
T ss_pred cCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHH-HcCCCCC---CHHHHHHHHHHHHH
Confidence 1111111224789999999987764 222 67888888876654221 1111111 25566666666654
No 203
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.015 Score=44.98 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=56.0
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHhc-----cCCceEEEEeCCCCCc-hhhhhcc---eeeEecCCCHHHH
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLERY-----KGLNKVFFCCSDVSKL-QPIKSLC---TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~~-----~~~~~~Il~~n~~~~i-~~l~SRc---~~i~~~~~~~~~i 60 (137)
||+||+|++. .+.|..++.++++. +.|..+|++||...-+ ++|.--. ..+.|++|+.+..
T Consensus 244 ifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar 323 (404)
T KOG0728|consen 244 IFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEAR 323 (404)
T ss_pred EeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHH
Confidence 6899999983 23477788888764 3578899999999888 7776533 4699999999988
Q ss_pred HHHHHHHHHHcCC
Q 042716 61 VEVLEFIAEQEGI 73 (137)
Q Consensus 61 ~~~l~~i~~~egi 73 (137)
.++|+-..++.++
T Consensus 324 ~~ilkihsrkmnl 336 (404)
T KOG0728|consen 324 LDILKIHSRKMNL 336 (404)
T ss_pred HHHHHHhhhhhch
Confidence 8888766665543
No 204
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.21 E-value=0.017 Score=45.45 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=42.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc----------cCCceEEE-Ee-C-----CCCCc-hhhhhcc-eeeEecCCCHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERY----------KGLNKVFF-CC-S-----DVSKL-QPIKSLC-TVIQLLPPSKQ 58 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~----------~~~~~~Il-~~-n-----~~~~i-~~l~SRc-~~i~~~~~~~~ 58 (137)
+++||+++-.+..|++|+..|++. .-..+|++ +| | ..+.+ .+++.|| ..+.+..|..+
T Consensus 116 ll~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~ 192 (329)
T COG0714 116 LLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSE 192 (329)
T ss_pred EEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCch
Confidence 479999999999999999999983 12233333 34 4 22448 9999999 77888888444
No 205
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.17 E-value=0.014 Score=44.26 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=58.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeEecCCCHHHHHHHHHHHHHHcC---CCCCH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEG---IQLPH 77 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~eg---i~i~~ 77 (137)
+|+|+++... ....+...+-....++++|+||.+..-.......+..+++.+++.++....+...+.... -.-.+
T Consensus 105 lVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~ 182 (287)
T PF00931_consen 105 LVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLE 182 (287)
T ss_dssp EEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSC
T ss_pred eeeeeecccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4788887655 444455555444567899999987542255544488999999999999999998876544 11224
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 78 QLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 78 ~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
+....|++.|+|-+-.+.-+-..+
T Consensus 183 ~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 183 DLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp THHHHHHHHTTT-HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccc
Confidence 567899999988665544443333
No 206
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.015 Score=49.80 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=64.4
Q ss_pred CcccccCcCCHHH-----------HHHHHHHHHhc--cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLSTDA-----------LLYMRWLLERY--KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~~-----------~~~L~~~le~~--~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~~ 63 (137)
+|+||+|.+..+- -+.|+.-|+=. .+++.+|-+||-+..| ++|.. |. .++.++.|+.+....+
T Consensus 531 iFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~I 610 (693)
T KOG0730|consen 531 IFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEI 610 (693)
T ss_pred EehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHH
Confidence 5899999985432 33344444321 2345566667777889 99999 77 7899999999888888
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHcCC-cHHHHHHHHHHHH
Q 042716 64 LEFIAEQEGIQLPHQ-LAEKIADNSKN-NLRQAIRSFEASR 102 (137)
Q Consensus 64 l~~i~~~egi~i~~~-~l~~i~~~~~g-d~R~aln~L~~~~ 102 (137)
++..+++ ++++++ .+..|+...+| +=+.+.++.|.+.
T Consensus 611 lk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~lCq~A~ 649 (693)
T KOG0730|consen 611 LKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAVCQEAA 649 (693)
T ss_pred HHHHHhc--CCCCccccHHHHHHHhccCChHHHHHHHHHHH
Confidence 8876654 556666 57777774322 2333444444433
No 207
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.026 Score=46.72 Aligned_cols=102 Identities=13% Similarity=0.079 Sum_probs=67.5
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHH--hccCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLST-----------DALLYMRWLLE--RYKGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le--~~~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~~ 63 (137)
|||||+|.+.. ...+.|+..++ +...++.+|.+||.+..+ ++++- |+ ..+.|++|+.++..+.
T Consensus 339 iFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i 418 (494)
T COG0464 339 IFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEI 418 (494)
T ss_pred EEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHH
Confidence 68999999822 34666777774 233445567778888888 77666 77 5899999999999999
Q ss_pred HHHHHHHcCCC-CCHHHHHHHHHHcCC-cHHHHHHHHHHHH
Q 042716 64 LEFIAEQEGIQ-LPHQLAEKIADNSKN-NLRQAIRSFEASR 102 (137)
Q Consensus 64 l~~i~~~egi~-i~~~~l~~i~~~~~g-d~R~aln~L~~~~ 102 (137)
++......+.. ..+-.+..+++...| .-..+.+.++.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~ 459 (494)
T COG0464 419 FKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAA 459 (494)
T ss_pred HHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 98887766554 233445556664332 3334444444443
No 208
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.039 Score=47.29 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=69.4
Q ss_pred CcccccCcCCH----------HHHHHHHHHHHhcc--CCceEEEEeCCCCCc-hhhhh-cc-eeeEecCCCHHHHHHHHH
Q 042716 1 IILCEADKLST----------DALLYMRWLLERYK--GLNKVFFCCSDVSKL-QPIKS-LC-TVIQLLPPSKQEIVEVLE 65 (137)
Q Consensus 1 iiiDEid~l~~----------~~~~~L~~~le~~~--~~~~~Il~~n~~~~i-~~l~S-Rc-~~i~~~~~~~~~i~~~l~ 65 (137)
++|||+|.+.+ .....|+..++-.. .+..++-++|.+..| +.+|- |+ ..+.+.-|+..+-.++++
T Consensus 282 i~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~ 361 (693)
T KOG0730|consen 282 IFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILR 361 (693)
T ss_pred EeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHH
Confidence 58999999975 23566888888665 444466667888889 99994 77 568888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcH
Q 042716 66 FIAEQEGIQLPHQLAEKIADNSKNNL 91 (137)
Q Consensus 66 ~i~~~egi~i~~~~l~~i~~~~~gd~ 91 (137)
...++.+.. ++..+..++..+.|-.
T Consensus 362 ~l~k~~~~~-~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 362 VLTKKMNLL-SDVDLEDIAVSTHGYV 386 (693)
T ss_pred HHHHhcCCc-chhhHHHHHHHccchh
Confidence 998888876 6677888887766543
No 209
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.91 E-value=0.013 Score=40.24 Aligned_cols=54 Identities=22% Similarity=0.210 Sum_probs=39.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-cCCceEEEEeCCCC-------Cc-hhhhhcc--eeeEecC
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-KGLNKVFFCCSDVS-------KL-QPIKSLC--TVIQLLP 54 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-~~~~~~Il~~n~~~-------~i-~~l~SRc--~~i~~~~ 54 (137)
++|+|+|.|+.+.|..|...+++. ..++++|++|.... .+ +.|..|. ..+.+++
T Consensus 73 L~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 73 LYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLPP 137 (138)
T ss_dssp EEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE--
T ss_pred EEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCCC
Confidence 579999999999999999999964 56789999998663 25 6777775 3455543
No 210
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.073 Score=46.69 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=75.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC---------------------------C-c-
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS---------------------------K-L- 40 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~---------------------------~-i- 40 (137)
|++||+++=++.-.+.|+-+++.-. .||.+|||+|--. + .
T Consensus 597 iLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~ 676 (786)
T COG0542 597 ILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFR 676 (786)
T ss_pred EEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCC
Confidence 5799999999999999999999643 4778999998210 1 3
Q ss_pred hhhhhcce-eeEecCCCHHHHHHHHHH-------HHHHcCC--CCCHHHHHHHHHHcC---CcHHHHHHHHHHHH
Q 042716 41 QPIKSLCT-VIQLLPPSKQEIVEVLEF-------IAEQEGI--QLPHQLAEKIADNSK---NNLRQAIRSFEASR 102 (137)
Q Consensus 41 ~~l~SRc~-~i~~~~~~~~~i~~~l~~-------i~~~egi--~i~~~~l~~i~~~~~---gd~R~aln~L~~~~ 102 (137)
|.+++|.- ++.|.+++.+++..++.. ...+.|+ .+++++..++++.+. .-.|-+-+.+|...
T Consensus 677 PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i 751 (786)
T COG0542 677 PEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEI 751 (786)
T ss_pred HHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHH
Confidence 66777875 999999999987766532 3334454 678999999998754 33566666666554
No 211
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.86 E-value=0.094 Score=42.52 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=75.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhccee--eEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCTV--IQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~~--i~~~~~~~-- 57 (137)
+++||+-.|++.-|..|++++..-+ -++++|++|..+ .+. .+|--|.-+ ++++|+-+
T Consensus 297 VlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~ 376 (511)
T COG3283 297 VLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERP 376 (511)
T ss_pred EEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCc
Confidence 5899999999999999999997432 246788887654 346 788888754 44444433
Q ss_pred HHH----HHHHHHHHHHcCC---CCCHHHHHHHHHH-cCCcHHHHHHHHHHHHh
Q 042716 58 QEI----VEVLEFIAEQEGI---QLPHQLAEKIADN-SKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 58 ~~i----~~~l~~i~~~egi---~i~~~~l~~i~~~-~~gd~R~aln~L~~~~~ 103 (137)
+++ .-.+.+++.+-|+ +++++.+.++.++ -.|++|+.-|.+-.+..
T Consensus 377 ~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 377 QDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred ccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 222 2346778888887 4678888888876 78999999999876543
No 212
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.85 E-value=0.21 Score=41.68 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=66.9
Q ss_pred cccccCcC--CHHHHHHHHHHHHhccCCc-eEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 042716 2 ILCEADKL--STDALLYMRWLLERYKGLN-KVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPH 77 (137)
Q Consensus 2 iiDEid~l--~~~~~~~L~~~le~~~~~~-~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~ 77 (137)
++.|.|.+ .+.....|+.+........ .+|+.+ ..-.+ +.|..-+.++.|+-|+.+++...+..++...++.+++
T Consensus 86 vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~-~~~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~ 164 (489)
T CHL00195 86 LLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIA-SELNIPKELKDLITVLEFPLPTESEIKKELTRLIKSLNIKIDS 164 (489)
T ss_pred EEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEc-CCCCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhcCCCCCH
Confidence 56667776 3334555655554443333 344444 34557 6777778899999999999999999998888999999
Q ss_pred HHHHHHHHHcCCc-HHHHHHHHH
Q 042716 78 QLAEKIADNSKNN-LRQAIRSFE 99 (137)
Q Consensus 78 ~~l~~i~~~~~gd-~R~aln~L~ 99 (137)
+.++.+++.+.|= .-.+-+.+.
T Consensus 165 ~~~~~l~~~~~gls~~~~~~~~~ 187 (489)
T CHL00195 165 ELLENLTRACQGLSLERIRRVLS 187 (489)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999986553 333333333
No 213
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=95.84 E-value=0.028 Score=49.97 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=43.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCC-------------CCc-hhhhhcc-eeeEe
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDV-------------SKL-QPIKSLC-TVIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~-------------~~i-~~l~SRc-~~i~~ 52 (137)
++|||+|.|+...|.+|+..||+.. ..+++|.+||.. -.+ ++|.||+ .+|-+
T Consensus 561 L~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l 640 (915)
T PTZ00111 561 CCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLV 640 (915)
T ss_pred EEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEe
Confidence 4799999999999999999999753 356788888753 137 8999999 55444
Q ss_pred cCCCHH
Q 042716 53 LPPSKQ 58 (137)
Q Consensus 53 ~~~~~~ 58 (137)
....+.
T Consensus 641 ~D~~d~ 646 (915)
T PTZ00111 641 LDHIDQ 646 (915)
T ss_pred cCCCCh
Confidence 444443
No 214
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.83 E-value=0.14 Score=39.45 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=74.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc---CCceEEEEeCCC--C--C--c-hhhhhccee-eEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK---GLNKVFFCCSDV--S--K--L-QPIKSLCTV-IQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~---~~~~~Il~~n~~--~--~--i-~~l~SRc~~-i~~~~~~~~~i~~~l~~i~~ 69 (137)
+++||+|.++.++-.+|+.+.|--. +.-.+++++-.. + + . ..+.-||.+ |.++|++.++...+|++..+
T Consensus 135 l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le 214 (269)
T COG3267 135 LMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLE 214 (269)
T ss_pred EeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHh
Confidence 3689999999999999988877533 223366666432 1 1 2 677789988 99999999999999999888
Q ss_pred HcCCC---CCHHHHHHHHHHcCCcHHHHHHHH
Q 042716 70 QEGIQ---LPHQLAEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 70 ~egi~---i~~~~l~~i~~~~~gd~R~aln~L 98 (137)
..|.. ++++++..+...+.|-+|..-+..
T Consensus 215 ~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 215 GAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred ccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 77664 568889999999999666554443
No 215
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.016 Score=50.62 Aligned_cols=101 Identities=14% Similarity=0.182 Sum_probs=77.9
Q ss_pred CcccccCcCC---------HHHHHHHHHHHHhccCCceEEEEeCCC-C-C-c---hhhhhcceeeEecCCCHHHHHHHHH
Q 042716 1 IILCEADKLS---------TDALLYMRWLLERYKGLNKVFFCCSDV-S-K-L---QPIKSLCTVIQLLPPSKQEIVEVLE 65 (137)
Q Consensus 1 iiiDEid~l~---------~~~~~~L~~~le~~~~~~~~Il~~n~~-~-~-i---~~l~SRc~~i~~~~~~~~~i~~~l~ 65 (137)
+||||+|.+. ..+.|.|...+. .+..++|-+|+.. + + + ++|--|++.+.+..|+.++...+|+
T Consensus 266 LFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILr 343 (786)
T COG0542 266 LFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILR 343 (786)
T ss_pred EEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHH
Confidence 5899999982 225677777887 6667788888644 2 2 3 7888899999999999999999997
Q ss_pred HHHH----HcCCCCCHHHHHHHHHHcCCc------HHHHHHHHHHHHh
Q 042716 66 FIAE----QEGIQLPHQLAEKIADNSKNN------LRQAIRSFEASRQ 103 (137)
Q Consensus 66 ~i~~----~egi~i~~~~l~~i~~~~~gd------~R~aln~L~~~~~ 103 (137)
-+.. ..|+.++++++.+.+..|.+- +.+|+.+++.+..
T Consensus 344 Glk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a 391 (786)
T COG0542 344 GLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGA 391 (786)
T ss_pred HHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHH
Confidence 6654 458899999999988877543 4578888876653
No 216
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.011 Score=47.29 Aligned_cols=87 Identities=18% Similarity=0.294 Sum_probs=63.6
Q ss_pred CcccccCcCCHH------------HHHHHHHHHHhccC--------CceEEEEeCC------CCCc-hhhhhcce-eeEe
Q 042716 1 IILCEADKLSTD------------ALLYMRWLLERYKG--------LNKVFFCCSD------VSKL-QPIKSLCT-VIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~------------~~~~L~~~le~~~~--------~~~~Il~~n~------~~~i-~~l~SRc~-~i~~ 52 (137)
|||||+|.+... .|..|+.++|-..- +-+++|++.- |+.+ |.|+-|+- .+.+
T Consensus 254 vFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVEL 333 (444)
T COG1220 254 VFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVEL 333 (444)
T ss_pred EEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEEc
Confidence 689999998322 38889999984321 2246666653 3457 99999995 5999
Q ss_pred cCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Q 042716 53 LPPSKQEIVEVLE-----------FIAEQEGI--QLPHQLAEKIADNS 87 (137)
Q Consensus 53 ~~~~~~~i~~~l~-----------~i~~~egi--~i~~~~l~~i~~~~ 87 (137)
.+++.++...+|. ...+-||+ .++++++..|++.+
T Consensus 334 ~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA 381 (444)
T COG1220 334 DALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIA 381 (444)
T ss_pred ccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHH
Confidence 9999999988873 23456776 46799999988764
No 217
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.76 E-value=0.026 Score=47.21 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=44.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCCC---------------------Cc-hhhhh
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDVS---------------------KL-QPIKS 45 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~~---------------------~i-~~l~S 45 (137)
+|+||++.+....+++|+..||+.. .++++|.++|..+ ++ .++++
T Consensus 298 LfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD 377 (506)
T PRK09862 298 LFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD 377 (506)
T ss_pred EecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh
Confidence 5899999999999999999998642 2456777777542 47 79999
Q ss_pred cce-eeEecCCCHH
Q 042716 46 LCT-VIQLLPPSKQ 58 (137)
Q Consensus 46 Rc~-~i~~~~~~~~ 58 (137)
|+- .+.+.+++.+
T Consensus 378 RfdL~v~v~~~~~~ 391 (506)
T PRK09862 378 RFDLSLEIPLPPPG 391 (506)
T ss_pred hccEEEEeCCCCHH
Confidence 994 5788877533
No 218
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=95.71 E-value=0.073 Score=46.00 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=40.8
Q ss_pred cccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCC------C-------Cc-hhhhhcce--eeEe
Q 042716 2 ILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDV------S-------KL-QPIKSLCT--VIQL 52 (137)
Q Consensus 2 iiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~------~-------~i-~~l~SRc~--~i~~ 52 (137)
+|||+|+|+...+..|..+||+-. ..+-++-+||.. . .+ ++|+||+- .+-|
T Consensus 531 CIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylll 610 (804)
T KOG0478|consen 531 CIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLL 610 (804)
T ss_pred EchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEe
Confidence 699999999999999999999653 133466666622 1 26 89999983 3455
Q ss_pred cCCCHH
Q 042716 53 LPPSKQ 58 (137)
Q Consensus 53 ~~~~~~ 58 (137)
.+++..
T Consensus 611 D~~DE~ 616 (804)
T KOG0478|consen 611 DKPDER 616 (804)
T ss_pred cCcchh
Confidence 565554
No 219
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.04 Score=42.76 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=54.1
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHhcc-----CCceEEEEeCCCCCc-hhhhhcc---eeeEecCCCHHHH
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLERYK-----GLNKVFFCCSDVSKL-QPIKSLC---TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~~~-----~~~~~Il~~n~~~~i-~~l~SRc---~~i~~~~~~~~~i 60 (137)
|||||+|.+. .+.|.-|+.++++.. .|+.+|++||....+ |+|.--. ..+.|+-|+..+-
T Consensus 252 ifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqk 331 (408)
T KOG0727|consen 252 IFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK 331 (408)
T ss_pred EEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhh
Confidence 6899999983 334788888887653 367799999999988 7776533 4688877777776
Q ss_pred HHHHHHHHHHcCCC
Q 042716 61 VEVLEFIAEQEGIQ 74 (137)
Q Consensus 61 ~~~l~~i~~~egi~ 74 (137)
.-....++.+.++.
T Consensus 332 rlvf~titskm~ls 345 (408)
T KOG0727|consen 332 RLVFSTITSKMNLS 345 (408)
T ss_pred hhhHHhhhhcccCC
Confidence 66667777766553
No 220
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.026 Score=46.18 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=51.9
Q ss_pred CceEEEEeCCCCCc-hhhhhcce-eeEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cCCcHHHHHH
Q 042716 27 LNKVFFCCSDVSKL-QPIKSLCT-VIQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADN----SKNNLRQAIR 96 (137)
Q Consensus 27 ~~~~Il~~n~~~~i-~~l~SRc~-~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~----~~gd~R~aln 96 (137)
+..+|-+||-+..+ .+++-|+. .+.++.|+.+.....+.+...+.+..+.+..+..+++. +.+|+.....
T Consensus 290 rvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~k 365 (428)
T KOG0740|consen 290 RVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCK 365 (428)
T ss_pred eEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHH
Confidence 34466666777778 76666984 56688888888888888888888888888888888876 4456655443
No 221
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.076 Score=45.56 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=64.3
Q ss_pred CcccccCcCCHHH-----------HHHHHHHHHhccCC------ceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHH
Q 042716 1 IILCEADKLSTDA-----------LLYMRWLLERYKGL------NKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQE 59 (137)
Q Consensus 1 iiiDEid~l~~~~-----------~~~L~~~le~~~~~------~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~ 59 (137)
+||||+|.+++.- ...|+..|++.... +.+|-+||-+..+ ++||- |+ ..+.+.-|+..+
T Consensus 286 vFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~a 365 (802)
T KOG0733|consen 286 VFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETA 365 (802)
T ss_pred EEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHH
Confidence 5899999997653 23456666655422 3366677888889 99986 44 478999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHH
Q 042716 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLR 92 (137)
Q Consensus 60 i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R 92 (137)
..++|+.+|+.-.++-+ -....|++...|=..
T Consensus 366 R~~IL~~~~~~lrl~g~-~d~~qlA~lTPGfVG 397 (802)
T KOG0733|consen 366 REEILRIICRGLRLSGD-FDFKQLAKLTPGFVG 397 (802)
T ss_pred HHHHHHHHHhhCCCCCC-cCHHHHHhcCCCccc
Confidence 99999999986655432 235667777766443
No 222
>PRK08116 hypothetical protein; Validated
Probab=95.22 E-value=0.028 Score=43.18 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=45.1
Q ss_pred Cccccc--CcCCHHHHHHHHHHHHhc-cCCceEEEEeCCCCC-----c-hhhhhc----ceeeEecCCCH
Q 042716 1 IILCEA--DKLSTDALLYMRWLLERY-KGLNKVFFCCSDVSK-----L-QPIKSL----CTVIQLLPPSK 57 (137)
Q Consensus 1 iiiDEi--d~l~~~~~~~L~~~le~~-~~~~~~Il~~n~~~~-----i-~~l~SR----c~~i~~~~~~~ 57 (137)
++|||+ +..+...+..|+.+++.- ..+.++|++||.++. + ..+.|| |..+.|..++.
T Consensus 182 LviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 182 LILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 579999 667888899999999963 455779999998753 4 578888 78899987764
No 223
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.12 E-value=0.23 Score=37.91 Aligned_cols=89 Identities=12% Similarity=0.184 Sum_probs=66.6
Q ss_pred HHHHHHHHH----hccCCceEEEEeCCCCCc-h-----------------------hhhhcc-eeeEecCCCHHHHHHHH
Q 042716 14 LLYMRWLLE----RYKGLNKVFFCCSDVSKL-Q-----------------------PIKSLC-TVIQLLPPSKQEIVEVL 64 (137)
Q Consensus 14 ~~~L~~~le----~~~~~~~~Il~~n~~~~i-~-----------------------~l~SRc-~~i~~~~~~~~~i~~~l 64 (137)
-..|..++| ..|.|+.+..|+|--+-+ . .|-.|+ ..+.|.+|+.++-.+++
T Consensus 124 yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV 203 (249)
T PF05673_consen 124 YKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIV 203 (249)
T ss_pred HHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHH
Confidence 445555554 456677777777733211 1 455666 68999999999999999
Q ss_pred HHHHHHcCCCCC-----HHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 65 EFIAEQEGIQLP-----HQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 65 ~~i~~~egi~i~-----~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
...+++.|+.++ .+++++-..+..++-|.|-.....+.
T Consensus 204 ~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~l~ 246 (249)
T PF05673_consen 204 RHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFIDDLA 246 (249)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 999999999999 45667777788889999998887664
No 224
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.90 E-value=0.14 Score=40.40 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=31.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccC-------CceEEEEeCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKG-------LNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~-------~~~~Il~~n~~~ 38 (137)
+|+||+|.|.++-.++|...++.++. ++.|||.+|.-.
T Consensus 182 FIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 182 FIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred EEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 47999999999999999999996653 456999998543
No 225
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=94.85 E-value=0.045 Score=43.31 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=35.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-------------cCCceEEEEeCCCC-------------Cc-hhhhhcce-eeEe
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-------------KGLNKVFFCCSDVS-------------KL-QPIKSLCT-VIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-------------~~~~~~Il~~n~~~-------------~i-~~l~SRc~-~i~~ 52 (137)
++|||.|.|..+...+|...||.- +..|.++.+||... .+ ++|.||+= +|.+
T Consensus 125 ccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l 204 (331)
T PF00493_consen 125 CCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLL 204 (331)
T ss_dssp EEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC
T ss_pred eeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEe
Confidence 379999999999999999999963 23456888887553 36 79999984 4444
Q ss_pred -cCCC
Q 042716 53 -LPPS 56 (137)
Q Consensus 53 -~~~~ 56 (137)
.+++
T Consensus 205 ~D~~d 209 (331)
T PF00493_consen 205 RDKPD 209 (331)
T ss_dssp --TTT
T ss_pred ccccc
Confidence 4444
No 226
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.72 E-value=0.12 Score=40.57 Aligned_cols=102 Identities=15% Similarity=0.077 Sum_probs=65.8
Q ss_pred CcccccCcC---CHHHHHHHHHHHHhc--cCCceEEEEeCCCC----Cc-hhhhhcceeeEecCCCHHH-HHHHHHHHHH
Q 042716 1 IILCEADKL---STDALLYMRWLLERY--KGLNKVFFCCSDVS----KL-QPIKSLCTVIQLLPPSKQE-IVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l---~~~~~~~L~~~le~~--~~~~~~Il~~n~~~----~i-~~l~SRc~~i~~~~~~~~~-i~~~l~~i~~ 69 (137)
+||||+|.+ +...|..++..+... .-..++|++++... .- +.+.||+..+.+++-..++ ....|...-.
T Consensus 149 LIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~ 228 (302)
T PF05621_consen 149 LIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFER 228 (302)
T ss_pred EEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHH
Confidence 589999997 233355554444433 23566787765442 23 7899999998888776653 3333332211
Q ss_pred ------HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 70 ------QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 70 ------~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
..++ -+++...+|...|+|.+....++|..+..
T Consensus 229 ~LPLr~~S~l-~~~~la~~i~~~s~G~iG~l~~ll~~aA~ 267 (302)
T PF05621_consen 229 ALPLRKPSNL-ASPELARRIHERSEGLIGELSRLLNAAAI 267 (302)
T ss_pred hCCCCCCCCC-CCHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 1122 24566688999999999999999887664
No 227
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.062 Score=44.25 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=52.1
Q ss_pred CcccccCcC---------CHHHHHHHHHHHHh---ccCCceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKL---------STDALLYMRWLLER---YKGLNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l---------~~~~~~~L~~~le~---~~~~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i~~~l~~ 66 (137)
+||||+|.+ +.....+|..++=+ .+....++|++|.+..+ .++-.|. .++.|+-|-.++..+.|..
T Consensus 447 lFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~l 526 (630)
T KOG0742|consen 447 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNL 526 (630)
T ss_pred EEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHH
Confidence 589999974 54444445444432 34455688899999999 9999998 7899999999998888876
Q ss_pred HHHH
Q 042716 67 IAEQ 70 (137)
Q Consensus 67 i~~~ 70 (137)
+..+
T Consensus 527 Ylnk 530 (630)
T KOG0742|consen 527 YLNK 530 (630)
T ss_pred HHHH
Confidence 5543
No 228
>PF05729 NACHT: NACHT domain
Probab=94.56 E-value=0.1 Score=35.80 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=47.0
Q ss_pred CcccccCcCCHHHHH--------HHHHHHHh-ccCCceEEEEeCCCCC--chhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALL--------YMRWLLER-YKGLNKVFFCCSDVSK--LQPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 1 iiiDEid~l~~~~~~--------~L~~~le~-~~~~~~~Il~~n~~~~--i~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
++||-+|.+...... .|...+.. ...+++++++|+.... +.........+.+.+.+.+++..++++..
T Consensus 85 lilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 85 LILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred EEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHHh
Confidence 478888888764432 45556665 3567889999986654 43333333789999999999999887643
No 229
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=94.45 E-value=0.51 Score=38.73 Aligned_cols=102 Identities=16% Similarity=0.240 Sum_probs=69.8
Q ss_pred CcccccCcC----C----HHHHHHHHHHHHhccC----CceEEEEeCCC-----C-Cc---hhhhhcc------------
Q 042716 1 IILCEADKL----S----TDALLYMRWLLERYKG----LNKVFFCCSDV-----S-KL---QPIKSLC------------ 47 (137)
Q Consensus 1 iiiDEid~l----~----~~~~~~L~~~le~~~~----~~~~Il~~n~~-----~-~i---~~l~SRc------------ 47 (137)
|+|||++.+ + ...-+.|+.++++..+ +..|+++++.. . .+ ++|.+|.
T Consensus 243 I~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~~~n 322 (416)
T PF10923_consen 243 ILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDGFDN 322 (416)
T ss_pred EEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhccccccccccC
Confidence 579999987 1 1236788899887543 56677887632 1 23 7888884
Q ss_pred ---eeeEecCCCHHHHHHHHHHHHH------HcCCCCCHHHHHHHHHHcCCc------------HHHHHHHHHHHH
Q 042716 48 ---TVIQLLPPSKQEIVEVLEFIAE------QEGIQLPHQLAEKIADNSKNN------------LRQAIRSFEASR 102 (137)
Q Consensus 48 ---~~i~~~~~~~~~i~~~l~~i~~------~egi~i~~~~l~~i~~~~~gd------------~R~aln~L~~~~ 102 (137)
.++++++++.+++...+.++.. .....++++.+..+++.+.+. +|..++.|..+.
T Consensus 323 ~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~fv~~Ld~~~ 398 (416)
T PF10923_consen 323 LRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDFVDVLDILE 398 (416)
T ss_pred ccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHHHHHHHHHH
Confidence 3788999999999888776653 122478899998888665433 455666666665
No 230
>PRK06526 transposase; Provisional
Probab=94.26 E-value=0.067 Score=40.86 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=42.2
Q ss_pred CcccccCcC--CHHHHHHHHHHHHhccCCceEEEEeCCCCC----------c-hhhhhc----ceeeEecCCCHH
Q 042716 1 IILCEADKL--STDALLYMRWLLERYKGLNKVFFCCSDVSK----------L-QPIKSL----CTVIQLLPPSKQ 58 (137)
Q Consensus 1 iiiDEid~l--~~~~~~~L~~~le~~~~~~~~Il~~n~~~~----------i-~~l~SR----c~~i~~~~~~~~ 58 (137)
+||||++.+ +...++.|+.+++.-..+..+|++||.+.. + .++.|| |.++.|...|.-
T Consensus 163 LIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R 237 (254)
T PRK06526 163 LIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYR 237 (254)
T ss_pred EEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcc
Confidence 589999987 577788899998865555679999998742 2 345565 677888776644
No 231
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.26 E-value=0.43 Score=36.90 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=47.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc--CCceEEEEeCCCC---------------Cc-hhhhhcc--eeeEecCCCHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK--GLNKVFFCCSDVS---------------KL-QPIKSLC--TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~--~~~~~Il~~n~~~---------------~i-~~l~SRc--~~i~~~~~~~~~i 60 (137)
|+|||.|++.++....++..+...- +++.||++++... .. .....+. ..|.+++++..++
T Consensus 176 iiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~~~~~ 255 (325)
T PF07693_consen 176 IIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPSPSDL 255 (325)
T ss_pred EEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCCHHHH
Confidence 5899999999997766666665432 5777888886431 12 3334444 3588999999888
Q ss_pred HHHHHHHH
Q 042716 61 VEVLEFIA 68 (137)
Q Consensus 61 ~~~l~~i~ 68 (137)
...+....
T Consensus 256 ~~~~~~~~ 263 (325)
T PF07693_consen 256 ERYLNELL 263 (325)
T ss_pred HHHHHHHH
Confidence 88887663
No 232
>PF14516 AAA_35: AAA-like domain
Probab=94.05 E-value=0.81 Score=36.15 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=67.5
Q ss_pred CcccccCcCCH------HHHHHHHHHHHhcc-----CCceEEEEeCCCCC----c--hhhhhcceeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLST------DALLYMRWLLERYK-----GLNKVFFCCSDVSK----L--QPIKSLCTVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~------~~~~~L~~~le~~~-----~~~~~Il~~n~~~~----i--~~l~SRc~~i~~~~~~~~~i~~~ 63 (137)
++|||+|.+.. +-...|+...++-. .+.+|+++...... . .|+ +.+..+.++..+.+++...
T Consensus 131 L~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPF-NIg~~i~L~~Ft~~ev~~L 209 (331)
T PF14516_consen 131 LFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPF-NIGQPIELPDFTPEEVQEL 209 (331)
T ss_pred EEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCc-ccccceeCCCCCHHHHHHH
Confidence 57999999865 22555667776533 22346665543322 2 344 5678899999999998776
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
+.. .|.+.+++.++.+....+|-+=-.-.++..++.
T Consensus 210 ~~~----~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 210 AQR----YGLEFSQEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred HHh----hhccCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 544 578889999999999999998655555555553
No 233
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.13 Score=44.10 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=59.2
Q ss_pred CcccccCcCCHH-----------HHHHHHHHHHhc--cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLSTD-----------ALLYMRWLLERY--KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~-----------~~~~L~~~le~~--~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~~ 63 (137)
||+||+|.|.+. -.|.|+--|+-. ..++++|-+||-+..| ++++- |. ..+.+..|+.++...+
T Consensus 608 IFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~I 687 (802)
T KOG0733|consen 608 IFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAI 687 (802)
T ss_pred EEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHH
Confidence 689999999432 255666655432 2356677777888888 77765 44 5678888999999999
Q ss_pred HHHHHHHcCCCCCHHH-HHHHHH
Q 042716 64 LEFIAEQEGIQLPHQL-AEKIAD 85 (137)
Q Consensus 64 l~~i~~~egi~i~~~~-l~~i~~ 85 (137)
|+.+.+..+..+++++ +..|+.
T Consensus 688 LK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 688 LKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred HHHHhccCCCCCCcccCHHHHhh
Confidence 9999887666666554 444554
No 234
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.042 Score=44.73 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=55.0
Q ss_pred CcccccCcCCHH------------HHHHHHHHHHhcc-----CCceEEEEeCCC-CCc-hhhhhcceeeEecCCCHHHHH
Q 042716 1 IILCEADKLSTD------------ALLYMRWLLERYK-----GLNKVFFCCSDV-SKL-QPIKSLCTVIQLLPPSKQEIV 61 (137)
Q Consensus 1 iiiDEid~l~~~------------~~~~L~~~le~~~-----~~~~~Il~~n~~-~~i-~~l~SRc~~i~~~~~~~~~i~ 61 (137)
|||||||.|... -..-|+--|+-.. ....|+|++++. -.| .++|-|+..=-|-|+++.+-.
T Consensus 308 IFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R 387 (491)
T KOG0738|consen 308 IFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEAR 387 (491)
T ss_pred eehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHH
Confidence 799999999322 1333444443211 133577776554 579 999999964333355555566
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH----cCCcHHHHHHHHHH
Q 042716 62 EVLEFIAEQEGIQLPHQLAEKIADN----SKNNLRQAIRSFEA 100 (137)
Q Consensus 62 ~~l~~i~~~egi~i~~~~l~~i~~~----~~gd~R~aln~L~~ 100 (137)
+.|.+++-.+-..-++-.+..|++. ++-|++.+.....+
T Consensus 388 ~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm 430 (491)
T KOG0738|consen 388 SALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASM 430 (491)
T ss_pred HHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 6666665544332233234445544 44466655444333
No 235
>PRK08181 transposase; Validated
Probab=93.36 E-value=0.17 Score=39.06 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=41.4
Q ss_pred CcccccCcC--CHHHHHHHHHHHHhccCCceEEEEeCCCCC----------c-hhhhhc----ceeeEecCCCH
Q 042716 1 IILCEADKL--STDALLYMRWLLERYKGLNKVFFCCSDVSK----------L-QPIKSL----CTVIQLLPPSK 57 (137)
Q Consensus 1 iiiDEid~l--~~~~~~~L~~~le~~~~~~~~Il~~n~~~~----------i-~~l~SR----c~~i~~~~~~~ 57 (137)
+||||++.+ +...++.|+.+++.-..+.++|+++|.+.. + .++.|| |.++.|...|.
T Consensus 171 LIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~ 244 (269)
T PRK08181 171 LILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESY 244 (269)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccc
Confidence 589999887 445577899999976556789999997732 2 345555 67788877553
No 236
>PRK12377 putative replication protein; Provisional
Probab=93.25 E-value=0.13 Score=39.27 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=42.2
Q ss_pred Cccccc--CcCCHHHHHHHHHHHHhccC-CceEEEEeCCCCC-----c-hhhhhcc-----eeeEecCCC
Q 042716 1 IILCEA--DKLSTDALLYMRWLLERYKG-LNKVFFCCSDVSK-----L-QPIKSLC-----TVIQLLPPS 56 (137)
Q Consensus 1 iiiDEi--d~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~-----i-~~l~SRc-----~~i~~~~~~ 56 (137)
++|||+ +.+++..+..|+.+++.-.. ..+.|+++|.... + ..+.||. ..+.|...|
T Consensus 167 LiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 167 LVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 589999 66788899999999998544 5789999997632 4 5666763 457777665
No 237
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.56 Score=36.74 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=49.4
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHhccC-----CceEEEEeCCCCCc-hhhh-h-cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLERYKG-----LNKVFFCCSDVSKL-QPIK-S-LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~~~~-----~~~~Il~~n~~~~i-~~l~-S-Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+. .+.|..++.++++..+ ...+|-+||...-+ |+|. | |. ..+.|+.|+.+..
T Consensus 268 IFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aR 347 (424)
T KOG0652|consen 268 IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEAR 347 (424)
T ss_pred EEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHH
Confidence 6899999983 3447788888876432 34477778877778 6654 3 33 5799988888766
Q ss_pred HHHHHHHHHHcCC
Q 042716 61 VEVLEFIAEQEGI 73 (137)
Q Consensus 61 ~~~l~~i~~~egi 73 (137)
..+++-.+++.++
T Consensus 348 arIlQIHsRKMnv 360 (424)
T KOG0652|consen 348 ARILQIHSRKMNV 360 (424)
T ss_pred HHHHHHhhhhcCC
Confidence 6666655555544
No 238
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.53 E-value=0.21 Score=34.56 Aligned_cols=48 Identities=6% Similarity=-0.012 Sum_probs=32.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCC----c------eEEEEeCCC-C-----Cc-hhhhhcce
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGL----N------KVFFCCSDV-S-----KL-QPIKSLCT 48 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~----~------~~Il~~n~~-~-----~i-~~l~SRc~ 48 (137)
+++||+.+-.+..|.+|+..|++..-. + -+|++|-++ . .+ .+++.|+.
T Consensus 66 ll~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 66 LLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp EEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred eeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 478999999999999999999986422 1 255555444 2 47 78888864
No 239
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.03 E-value=0.35 Score=40.13 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=46.8
Q ss_pred CcccccCcCCHHH-HHHHHHHHHh----------------------ccCCceEEEEeCCCC----Cc-hhhhhcceeeEe
Q 042716 1 IILCEADKLSTDA-LLYMRWLLER----------------------YKGLNKVFFCCSDVS----KL-QPIKSLCTVIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~----------------------~~~~~~~Il~~n~~~----~i-~~l~SRc~~i~~ 52 (137)
+||||+++-.... ...++..+|. .|.|.++|.|.|... .+ .+++-|+..+++
T Consensus 276 liIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i 355 (459)
T PRK11331 276 FIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDI 355 (459)
T ss_pred EEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheEEe
Confidence 5899999998664 6666666662 235667888888876 37 899999999999
Q ss_pred cCC-CHHHHHHHHH
Q 042716 53 LPP-SKQEIVEVLE 65 (137)
Q Consensus 53 ~~~-~~~~i~~~l~ 65 (137)
.+- +...+.+++.
T Consensus 356 ~p~~~~~~~~~~l~ 369 (459)
T PRK11331 356 EPGFDTPQFRNFLL 369 (459)
T ss_pred cCCCChHHHHHHHH
Confidence 873 4445555543
No 240
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=0.94 Score=41.18 Aligned_cols=98 Identities=10% Similarity=0.124 Sum_probs=70.2
Q ss_pred CcccccCcCCHH-----------HHHHHHHHHHhccCCceE--EEEeCCCCCc-hhhhhcc---eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLSTD-----------ALLYMRWLLERYKGLNKV--FFCCSDVSKL-QPIKSLC---TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~-----------~~~~L~~~le~~~~~~~~--Il~~n~~~~i-~~l~SRc---~~i~~~~~~~~~i~~~ 63 (137)
|++||+|+|.+- -..-|+.+|.-.+...++ |-+||.+..+ ++||-+. ..|.|.-|+.+.-.++
T Consensus 367 IffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~I 446 (1080)
T KOG0732|consen 367 IFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKI 446 (1080)
T ss_pred EeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHH
Confidence 588999988432 134567777765555554 4446778899 9997664 5799999988888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L 98 (137)
+.-.-.+..-.++...+..+++.+.|-...-+..|
T Consensus 447 l~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaL 481 (1080)
T KOG0732|consen 447 LDIHTRKWEPPISRELLLWLAEETSGYGGADLKAL 481 (1080)
T ss_pred HHHhccCCCCCCCHHHHHHHHHhccccchHHHHHH
Confidence 87666677778888889999987666554444333
No 241
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=91.77 E-value=0.95 Score=37.14 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=56.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC---CCc-hhhhhcc-eeeEecCCCH-HHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV---SKL-QPIKSLC-TVIQLLPPSK-QEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~---~~i-~~l~SRc-~~i~~~~~~~-~~i~~~ 63 (137)
+.+||+-.|...-|++|+.++++-. --..|+|+++.. ..| +.|+.|+ ..+....+++ ++-..+
T Consensus 148 lYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 148 LYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred EEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHH
Confidence 4689999999999999999999731 123477765544 248 9999996 5677777665 344455
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCcHH
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADNSKNNLR 92 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~~~gd~R 92 (137)
+.+.+..+ ..++..++.+... ...+|
T Consensus 228 i~r~~~f~--~~Pe~f~~~~~~~-~~~lR 253 (423)
T COG1239 228 IRRRLAFE--AVPEAFLEKYADA-QRALR 253 (423)
T ss_pred HHHHHHhh--cCcHHHHHHHHHH-HHHHH
Confidence 55544443 3344444444333 23455
No 242
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=91.60 E-value=0.4 Score=38.62 Aligned_cols=85 Identities=8% Similarity=-0.069 Sum_probs=55.5
Q ss_pred cccccCcCCHHHHHHHHHHHHhccC----C-------ceEEEEeCCC-------CCc-hhhhhcceeeEecCCCHHH-HH
Q 042716 2 ILCEADKLSTDALLYMRWLLERYKG----L-------NKVFFCCSDV-------SKL-QPIKSLCTVIQLLPPSKQE-IV 61 (137)
Q Consensus 2 iiDEid~l~~~~~~~L~~~le~~~~----~-------~~~Il~~n~~-------~~i-~~l~SRc~~i~~~~~~~~~-i~ 61 (137)
-++|+.......++.|+.++++..- . ..||.++|.. .+. .+|+.||..+.++.+..=. =.
T Consensus 241 ~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E~ 320 (361)
T smart00763 241 EFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEEA 320 (361)
T ss_pred EEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcCCHHHHH
Confidence 4679999999999999999997421 1 1145555655 256 9999999998887766522 22
Q ss_pred HHHHHHHHH---cCCCCCHHHHHHHHHH
Q 042716 62 EVLEFIAEQ---EGIQLPHQLAEKIADN 86 (137)
Q Consensus 62 ~~l~~i~~~---egi~i~~~~l~~i~~~ 86 (137)
++.++.+.. .+..+.|.+++.++..
T Consensus 321 ~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 321 QIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred HHHHHHhccCcCcccccCchHHHHHHHH
Confidence 333333332 2556777766665543
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=91.34 E-value=0.36 Score=36.90 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=40.3
Q ss_pred CcccccCcC--CHHHHHHHHHHHHhccCCceEEEEeCCCCC-----------c-hhhhhc----ceeeEecCCCH
Q 042716 1 IILCEADKL--STDALLYMRWLLERYKGLNKVFFCCSDVSK-----------L-QPIKSL----CTVIQLLPPSK 57 (137)
Q Consensus 1 iiiDEid~l--~~~~~~~L~~~le~~~~~~~~Il~~n~~~~-----------i-~~l~SR----c~~i~~~~~~~ 57 (137)
++|||++.+ +...++.|+.+++.-..+..+|+|+|.+.. + .++.|| |.++.|...|.
T Consensus 168 LiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~s~ 242 (259)
T PRK09183 168 LIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGESY 242 (259)
T ss_pred EEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEEeecCCCC
Confidence 489999974 666677899999765555678999987632 2 356665 56788877553
No 244
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.97 E-value=0.73 Score=40.88 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=70.5
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCCCc--hhhhhcceeeEec----CCCHHHHHHHHHHHHHHcCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVSKL--QPIKSLCTVIQLL----PPSKQEIVEVLEFIAEQEGI 73 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~~i--~~l~SRc~~i~~~----~~~~~~i~~~l~~i~~~egi 73 (137)
++|||-|.++..+ ..+|...++..|.+..+|++|...+.+ ..+|=|-..+.+. ..+.++....+.. .-|.
T Consensus 133 LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~---~~~l 209 (894)
T COG2909 133 LVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLND---RGSL 209 (894)
T ss_pred EEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHH---cCCC
Confidence 4799999997776 777999999989999999999988875 6666664433332 3466777766654 2348
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHH
Q 042716 74 QLPHQLAEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 74 ~i~~~~l~~i~~~~~gd~R~aln~L 98 (137)
.++...++.+.+.++| --.++.+.
T Consensus 210 ~Ld~~~~~~L~~~teG-W~~al~L~ 233 (894)
T COG2909 210 PLDAADLKALYDRTEG-WAAALQLI 233 (894)
T ss_pred CCChHHHHHHHhhccc-HHHHHHHH
Confidence 9999999999999998 44555444
No 245
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=1 Score=39.61 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=66.2
Q ss_pred CcccccCcCCHH----------H----HHHHHHHHHhccC---CceEEEEeCCCCCc-hhhhhc--c-eeeEecCCCHHH
Q 042716 1 IILCEADKLSTD----------A----LLYMRWLLERYKG---LNKVFFCCSDVSKL-QPIKSL--C-TVIQLLPPSKQE 59 (137)
Q Consensus 1 iiiDEid~l~~~----------~----~~~L~~~le~~~~---~~~~Il~~n~~~~i-~~l~SR--c-~~i~~~~~~~~~ 59 (137)
|++|++|.|... . ..+|..++..+.+ ...||.+.++...+ +.|.|- + .++.+++|...+
T Consensus 498 IvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~ 577 (952)
T KOG0735|consen 498 IVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTR 577 (952)
T ss_pred EEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhH
Confidence 578999988441 1 2233333343332 23467777777778 766664 3 478999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHH
Q 042716 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKN-NLRQAIRSFE 99 (137)
Q Consensus 60 i~~~l~~i~~~egi~i~~~~l~~i~~~~~g-d~R~aln~L~ 99 (137)
..++|..++.+....+..+.+..++..++| +++...-+.+
T Consensus 578 R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVe 618 (952)
T KOG0735|consen 578 RKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVE 618 (952)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHH
Confidence 999999999988877778888888777665 3343333333
No 246
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=90.30 E-value=0.38 Score=41.75 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=36.3
Q ss_pred cccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCCC-------------Cc-hhhhhcc
Q 042716 2 ILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDVS-------------KL-QPIKSLC 47 (137)
Q Consensus 2 iiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~~-------------~i-~~l~SRc 47 (137)
+|||.|.|......++...||+.. ..|-++.+||... .+ ++|.||+
T Consensus 388 cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRF 460 (682)
T COG1241 388 CIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRF 460 (682)
T ss_pred EEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhC
Confidence 699999999999999999999763 1334666677542 26 8999998
No 247
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=0.78 Score=40.55 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=54.6
Q ss_pred CcccccCcCCHHH-------------HHHHHHHHHhccC--Cc-eEEEEe-CCCCCc-hhhhh--cc-eeeEecCCCHHH
Q 042716 1 IILCEADKLSTDA-------------LLYMRWLLERYKG--LN-KVFFCC-SDVSKL-QPIKS--LC-TVIQLLPPSKQE 59 (137)
Q Consensus 1 iiiDEid~l~~~~-------------~~~L~~~le~~~~--~~-~~Il~~-n~~~~i-~~l~S--Rc-~~i~~~~~~~~~ 59 (137)
||+||+|.+.++- ...|+.-|+-.+. +. .||+.+ |-|+-+ ++|.- |+ ..+.+.+..+++
T Consensus 768 IFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~e 847 (953)
T KOG0736|consen 768 IFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAE 847 (953)
T ss_pred EEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHH
Confidence 6899999996542 5567777776553 22 255554 555556 77765 55 467777777665
Q ss_pred HHHH-HHHHHHHcCCCCCHHH-HHHHHHHcCCcHH
Q 042716 60 IVEV-LEFIAEQEGIQLPHQL-AEKIADNSKNNLR 92 (137)
Q Consensus 60 i~~~-l~~i~~~egi~i~~~~-l~~i~~~~~gd~R 92 (137)
-..+ |+...++ +.+++++ +..|++.|..++-
T Consensus 848 sk~~vL~AlTrk--FkLdedVdL~eiAk~cp~~~T 880 (953)
T KOG0736|consen 848 SKLRVLEALTRK--FKLDEDVDLVEIAKKCPPNMT 880 (953)
T ss_pred HHHHHHHHHHHH--ccCCCCcCHHHHHhhCCcCCc
Confidence 4443 4433333 4444443 6778887765554
No 248
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=89.70 E-value=0.8 Score=39.60 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=39.7
Q ss_pred cccccCcCCHHHHHHHHHHHHhccC-------------CceEEEEeCCCC-------------Cc-hhhhhcce--eeEe
Q 042716 2 ILCEADKLSTDALLYMRWLLERYKG-------------LNKVFFCCSDVS-------------KL-QPIKSLCT--VIQL 52 (137)
Q Consensus 2 iiDEid~l~~~~~~~L~~~le~~~~-------------~~~~Il~~n~~~-------------~i-~~l~SRc~--~i~~ 52 (137)
+|||.|.|+...|.|+...||+-.- .+.++-++|... ++ +||.||+- .+-+
T Consensus 447 CIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLl 526 (764)
T KOG0480|consen 447 CIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILL 526 (764)
T ss_pred EechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEe
Confidence 6999999999999999999997531 223555555331 36 89999983 3444
Q ss_pred cCCCHH
Q 042716 53 LPPSKQ 58 (137)
Q Consensus 53 ~~~~~~ 58 (137)
..++..
T Consensus 527 D~~nE~ 532 (764)
T KOG0480|consen 527 DDCNEV 532 (764)
T ss_pred cCCchH
Confidence 555443
No 249
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.60 E-value=1.2 Score=28.81 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=26.2
Q ss_pred CcccccCcCCHHHHHHHHH--------HHHhccCCceEEEEeCC
Q 042716 1 IILCEADKLSTDALLYMRW--------LLERYKGLNKVFFCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~--------~le~~~~~~~~Il~~n~ 36 (137)
+++||++.+.......... .......+..+|+++|.
T Consensus 82 iiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 5899999998887666543 33344567778888885
No 250
>PRK06835 DNA replication protein DnaC; Validated
Probab=89.49 E-value=0.57 Score=37.18 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=40.8
Q ss_pred CcccccCc--CCHHHHHHHHHHHHhccC-CceEEEEeCCCCC-----c-hhhhhc----ceeeEecCCC
Q 042716 1 IILCEADK--LSTDALLYMRWLLERYKG-LNKVFFCCSDVSK-----L-QPIKSL----CTVIQLLPPS 56 (137)
Q Consensus 1 iiiDEid~--l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~-----i-~~l~SR----c~~i~~~~~~ 56 (137)
+||||+.. .+...+..|+.+++.-.. +.+.|++||.+.. + +.+.|| |.++.|...+
T Consensus 250 LIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 250 LIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcC
Confidence 58999954 577778999999997543 5679999997743 4 577777 4577776543
No 251
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=89.26 E-value=0.22 Score=34.56 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=26.3
Q ss_pred CcccccCcCCH-HHHHHHHHHHHhccCCceEEEEeCCCCC
Q 042716 1 IILCEADKLST-DALLYMRWLLERYKGLNKVFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid~l~~-~~~~~L~~~le~~~~~~~~Il~~n~~~~ 39 (137)
+|+||+|.+.. .....+..++.......++++.+..+.+
T Consensus 133 iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 133 VILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred EEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCch
Confidence 58999999987 4555555666554456666666666654
No 252
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=88.96 E-value=0.55 Score=39.04 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=37.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-----cCCceEEEEeCCCCCc-hhhhhcc
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-----KGLNKVFFCCSDVSKL-QPIKSLC 47 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-----~~~~~~Il~~n~~~~i-~~l~SRc 47 (137)
+|+||+|.|-.++-.+|+.-+|.. ++.+-+.|+|-+|..| .++.|-+
T Consensus 259 fFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P~DiP~~VL~QL 311 (502)
T PF05872_consen 259 FFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNPTDIPDDVLGQL 311 (502)
T ss_pred EEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCCCCCCHHHHHhh
Confidence 479999999888877877777764 4566788999888888 7777765
No 253
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.63 E-value=0.81 Score=36.74 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=47.1
Q ss_pred CcccccCcCCHH---------------HHHHHHHHHHhccCCc-eEEEEeCCC-CCc-hhhhhcc-eeeEecCCCHHHHH
Q 042716 1 IILCEADKLSTD---------------ALLYMRWLLERYKGLN-KVFFCCSDV-SKL-QPIKSLC-TVIQLLPPSKQEIV 61 (137)
Q Consensus 1 iiiDEid~l~~~---------------~~~~L~~~le~~~~~~-~~Il~~n~~-~~i-~~l~SRc-~~i~~~~~~~~~i~ 61 (137)
++|||++.|+.. ..|+|+.-+++.+..- .+||+|.+. ..+ .++..|. .++.+.+|+.+.+.
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~ 333 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIY 333 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHH
Confidence 479999998432 2678887777654322 255555554 679 9999999 56888888888888
Q ss_pred HHHHH
Q 042716 62 EVLEF 66 (137)
Q Consensus 62 ~~l~~ 66 (137)
.+++.
T Consensus 334 ~Ilks 338 (423)
T KOG0744|consen 334 EILKS 338 (423)
T ss_pred HHHHH
Confidence 87754
No 254
>PRK06921 hypothetical protein; Provisional
Probab=88.58 E-value=0.73 Score=35.38 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=38.3
Q ss_pred CcccccCc-------CCHHHHHHHHHHHHhccC-CceEEEEeCCCCC----c-hhhhhc----ce--eeEecCCC
Q 042716 1 IILCEADK-------LSTDALLYMRWLLERYKG-LNKVFFCCSDVSK----L-QPIKSL----CT--VIQLLPPS 56 (137)
Q Consensus 1 iiiDEid~-------l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~----i-~~l~SR----c~--~i~~~~~~ 56 (137)
+||||++. ++...+..|+.+++.... +.++|+++|.++. + +.+.|| |. ++.|...|
T Consensus 181 LiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~~~~~l~sRi~~r~~~~~i~~~g~s 255 (266)
T PRK06921 181 LFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSRIVEMCKDYLVIIKGDS 255 (266)
T ss_pred EEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhhhhhHHHHHHHHhccCeEEEecCcc
Confidence 58999954 555567789999987543 4678999997643 3 455665 43 67776654
No 255
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=88.54 E-value=0.59 Score=34.78 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc
Q 042716 1 IILCEADKLSTDALLYMRWLLERY 24 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~ 24 (137)
+|+||+-.+.+...++|+..+|+.
T Consensus 110 LflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 110 LFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp EEECETTTS-HHHHHHHHHHHHHS
T ss_pred EEechhhhcCHHHHHHHHHHHHCC
Confidence 489999999999999999999964
No 256
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=88.31 E-value=8.8 Score=30.35 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=76.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeC---CC----CCc-hhhhhcceeeEecCCCHHHHHHHHH-HHHH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCS---DV----SKL-QPIKSLCTVIQLLPPSKQEIVEVLE-FIAE-- 69 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n---~~----~~i-~~l~SRc~~i~~~~~~~~~i~~~l~-~i~~-- 69 (137)
|+|.|.+.++.+.-+.|..++-.+....||+|+-. .. ..+ ....|+...-.|.-++..+....+- .+.-
T Consensus 203 Ii~eD~EsF~~~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~~~Lp~~~~~~L~~~~F~~~~~~~~l~~v~~~~l~~~ 282 (330)
T PF07034_consen 203 IIFEDFESFDSQVLQDLILILSSYLDRLPFVLIFGIATSVEAFHSRLPRSTLSLLRIKKFQLQSSSEILERVLEKVLLSP 282 (330)
T ss_pred EEEcccccCCHHHHHHHHHHHHhccCCcCEEEEEecCCChHHHHhhCCHHHHhhcCceEEEeCChHHHHHHHHHHHhcCC
Confidence 57899999999999999999988888888766643 22 235 7788888777788888777666654 3322
Q ss_pred HcCCCCCHHHHHHHHHH---cCCcHHHHHHHHHHHHh
Q 042716 70 QEGIQLPHQLAEKIADN---SKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~---~~gd~R~aln~L~~~~~ 103 (137)
...+.+++.++..+..+ .+.++...+..|+.+.+
T Consensus 283 ~~~~~l~~~~~~~L~~~f~~~~~Sv~~fi~~lk~~~m 319 (330)
T PF07034_consen 283 DFPFKLGPRVLQFLLDRFLDHDFSVDSFISGLKYAYM 319 (330)
T ss_pred CCCceECHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 23567888888887764 67888888888886654
No 257
>PRK13695 putative NTPase; Provisional
Probab=88.17 E-value=2 Score=30.34 Aligned_cols=63 Identities=24% Similarity=0.202 Sum_probs=44.8
Q ss_pred CcccccCcC---CHHHHHHHHHHHHhccCCceEEEEeCCCC--Cc-hhhhhc--ceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKL---STDALLYMRWLLERYKGLNKVFFCCSDVS--KL-QPIKSL--CTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l---~~~~~~~L~~~le~~~~~~~~Il~~n~~~--~i-~~l~SR--c~~i~~~~~~~~~i~~~l~~ 66 (137)
+++||+-.+ +....+.+...++ .+.++|++++... .. +.|.+| +.++.+.+-+.+++...+.+
T Consensus 100 lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~ 170 (174)
T PRK13695 100 IIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILN 170 (174)
T ss_pred EEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHH
Confidence 578986443 4445667777774 3567899988753 35 778887 68899988888887776655
No 258
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=87.80 E-value=1.7 Score=34.08 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=62.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC--------CCc-hhhhhcce---eeEecCCCHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV--------SKL-QPIKSLCT---VIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~--------~~i-~~l~SRc~---~i~~~~~~~~~i~~~l~~i~ 68 (137)
|++||+|.|...+.+.|+++.++ ..+-+++..+.- ... .-+.||.. .+...-+..++.......
T Consensus 169 iivDEA~~L~~~ale~lr~i~d~--~Gi~~vLvG~prL~~~l~~~~~~~~rl~srv~v~~~~~~~~~d~d~~~~~~~~-- 244 (297)
T COG2842 169 IIVDEADRLPYRALEELRRIHDK--TGIGVVLVGMPRLFKVLRRPEDELSRLYSRVRVGKLLGEKFPDADELAEIAAL-- 244 (297)
T ss_pred eeeehhhccChHHHHHHHHHHHh--hCceEEEecChHHHhccccchHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHh--
Confidence 57999999999999999999994 456688887644 112 34555532 122111221333333222
Q ss_pred HHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 69 EQEGIQ-LPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 69 ~~egi~-i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
+++ ..+.++..+.....|.+|.+-..|.....
T Consensus 245 ---~l~~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~ 277 (297)
T COG2842 245 ---VLPTEDELVLMQVIKETEGNIRRLDKILAGAVG 277 (297)
T ss_pred ---hCccchHHHHHHHHHhcchhHhHHHHHHhhhhh
Confidence 222 46778888999999999998888776654
No 259
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=87.11 E-value=0.91 Score=36.53 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=42.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-cCCceEEEEeCCCCC---------------chhhhhcceeeEecCCCH
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-KGLNKVFFCCSDVSK---------------LQPIKSLCTVIQLLPPSK 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-~~~~~~Il~~n~~~~---------------i~~l~SRc~~i~~~~~~~ 57 (137)
+++||.|--.....-.|.++++.. ..++.+|.|+|.++. |..|.++|.++++....+
T Consensus 131 LcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~~D 203 (362)
T PF03969_consen 131 LCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGGVD 203 (362)
T ss_pred EEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCCCc
Confidence 478999988877776666666653 456778888887641 357889999999988744
No 260
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.73 E-value=0.84 Score=36.37 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=47.4
Q ss_pred CcccccCcCCHH----HHHHHHHHHHhc---------cCCceEEEEeCC-CCCc-hhhhhccee-eEecCCCHHHHHHHH
Q 042716 1 IILCEADKLSTD----ALLYMRWLLERY---------KGLNKVFFCCSD-VSKL-QPIKSLCTV-IQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~~~----~~~~L~~~le~~---------~~~~~~Il~~n~-~~~i-~~l~SRc~~-i~~~~~~~~~i~~~l 64 (137)
|||||+|.|... --.+-+++--++ .....++|.+++ +-.+ .+||-|+.. +.+ |+++......+
T Consensus 229 IFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~M 307 (439)
T KOG0739|consen 229 IFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARM 307 (439)
T ss_pred EEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhh
Confidence 689999999332 244444443332 112335555544 4567 999999954 444 45554444333
Q ss_pred HHH-HHHcCCCCCHHHHHHHHHHcCC
Q 042716 65 EFI-AEQEGIQLPHQLAEKIADNSKN 89 (137)
Q Consensus 65 ~~i-~~~egi~i~~~~l~~i~~~~~g 89 (137)
-.+ .-.--..+++.....++...+|
T Consensus 308 F~lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 308 FKLHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred heeccCCCccccchhhHHHHHhhcCC
Confidence 221 1111235666677777765443
No 261
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=85.43 E-value=1.5 Score=34.97 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=44.5
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHHhcc-----CCceEEEEeCCCCCc-hhhhhcc---eeeEecCCCHHHH
Q 042716 1 IILCEADKLST-----------DALLYMRWLLERYK-----GLNKVFFCCSDVSKL-QPIKSLC---TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le~~~-----~~~~~Il~~n~~~~i-~~l~SRc---~~i~~~~~~~~~i 60 (137)
+||||+|.+.. +.|..++.++++.. +.+.+|++||....+ |+|.--. ..+.|+.|+...-
T Consensus 282 vFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~Tk 361 (440)
T KOG0726|consen 282 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 361 (440)
T ss_pred EEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhh
Confidence 58999999832 23788888888653 356799999999998 7765432 4588877766544
Q ss_pred HHH
Q 042716 61 VEV 63 (137)
Q Consensus 61 ~~~ 63 (137)
.++
T Consensus 362 kkI 364 (440)
T KOG0726|consen 362 KKI 364 (440)
T ss_pred cee
Confidence 433
No 262
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=85.27 E-value=1 Score=35.44 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=25.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-CCceEEEEeCCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-GLNKVFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~ 39 (137)
+||||+|.+.......+..+++... .++++++.|...++
T Consensus 128 iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SATlp~ 167 (358)
T TIGR01587 128 LIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSATLPK 167 (358)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCchH
Confidence 5899999998765555666555433 45666665544433
No 263
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=84.08 E-value=12 Score=29.05 Aligned_cols=59 Identities=10% Similarity=0.152 Sum_probs=49.0
Q ss_pred hhcc-eeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH-----HHHHHHHcCCcHHHHHHHHHHHH
Q 042716 44 KSLC-TVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL-----AEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 44 ~SRc-~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~-----l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
-.|+ .-+.|.+.+.++..+.+...+++.|++++++. ++.-..+.+++=|.|....+.+.
T Consensus 214 SDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~~ 278 (287)
T COG2607 214 SDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRDLA 278 (287)
T ss_pred hhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHHHH
Confidence 3454 56899999999999999999999999998744 45556678889999999888776
No 264
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=84.01 E-value=5.4 Score=36.75 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=55.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCC--HH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLP--HQ 78 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~--~~ 78 (137)
|++|+++. ....++|....+-...+.++|+||.+..-+.... -..++.+..++.++....+.+.|.+....-+ .+
T Consensus 300 LVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~-~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~ 376 (1153)
T PLN03210 300 IFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHG-IDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFME 376 (1153)
T ss_pred EEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcC-CCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHH
Confidence 47898875 3445555554443345678899888765442110 1257888999999988888877765432211 13
Q ss_pred HHHHHHHHcCCcHH
Q 042716 79 LAEKIADNSKNNLR 92 (137)
Q Consensus 79 ~l~~i~~~~~gd~R 92 (137)
....+++.++|-+-
T Consensus 377 l~~~iv~~c~GLPL 390 (1153)
T PLN03210 377 LASEVALRAGNLPL 390 (1153)
T ss_pred HHHHHHHHhCCCcH
Confidence 45667888887553
No 265
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=83.98 E-value=6.4 Score=34.25 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=66.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc---------------------cCCceEEEEeCCC--CCc-hhhhhccee----eEe
Q 042716 1 IILCEADKLSTDALLYMRWLLERY---------------------KGLNKVFFCCSDV--SKL-QPIKSLCTV----IQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~---------------------~~~~~~Il~~n~~--~~i-~~l~SRc~~----i~~ 52 (137)
+||||+..|....|+.+++.+.+- |-...+|+++|.. ..+ ++.+||-.- ..|
T Consensus 229 LiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~ 308 (647)
T COG1067 229 LIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEF 308 (647)
T ss_pred EEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEE
Confidence 589999999988887777777653 1233466666644 457 888888533 344
Q ss_pred cC--C-CHHHHHHH----HHHHHHH-cCCCCCHHHHHHHHHHc----------CCcHHHHHHHHHHHHh
Q 042716 53 LP--P-SKQEIVEV----LEFIAEQ-EGIQLPHQLAEKIADNS----------KNNLRQAIRSFEASRQ 103 (137)
Q Consensus 53 ~~--~-~~~~i~~~----l~~i~~~-egi~i~~~~l~~i~~~~----------~gd~R~aln~L~~~~~ 103 (137)
+. + +++...+. .+.+++. .-..++.+++..|+..+ .-.+|.+.++++.+..
T Consensus 309 ~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ 377 (647)
T COG1067 309 EDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGD 377 (647)
T ss_pred cCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhH
Confidence 33 3 34443333 3444555 34468889988887654 2468888888885543
No 266
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=83.98 E-value=1.7 Score=37.17 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=57.0
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHHhccCCceEE--EEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLST-----------DALLYMRWLLERYKGLNKVF--FCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le~~~~~~~~I--l~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~~ 63 (137)
|||||+|.+.. ...|.|+.-|+-+++|-.+| -+||-+..+ ++|.- |+ ..+.++.|+..=..++
T Consensus 400 IFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eI 479 (752)
T KOG0734|consen 400 IFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEI 479 (752)
T ss_pred EEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHH
Confidence 68999999832 22566677777677765544 445666778 66654 44 5788888887767777
Q ss_pred HHHHHHHcCCCCCHHH-HHHHHHHcC----CcHHHHHH
Q 042716 64 LEFIAEQEGIQLPHQL-AEKIADNSK----NNLRQAIR 96 (137)
Q Consensus 64 l~~i~~~egi~i~~~~-l~~i~~~~~----gd~R~aln 96 (137)
|+....+- .+++++ ...|++.+. -|+-.++|
T Consensus 480 L~~yl~ki--~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 480 LKLYLSKI--PLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred HHHHHhcC--CcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 77665443 233222 344555433 34544444
No 267
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=83.77 E-value=4.4 Score=32.95 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=46.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCC----Cc-hhhhhcceeeEecCCCHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVS----KL-QPIKSLCTVIQLLPPSKQEIVE 62 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~----~i-~~l~SRc~~i~~~~~~~~~i~~ 62 (137)
+|+||||.+- +=+.++..+.+.... .+++++++.. ++ ..|.-|...+.+.|+|-.+...
T Consensus 98 ifLDEIq~v~-~W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 98 IFLDEIQNVP-DWERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred EEEecccCch-hHHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 5899999985 477788888884332 5677766553 35 7888899999999999999875
No 268
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=83.37 E-value=3.5 Score=40.46 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=63.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccC------------Cce-EEEEeCCCC------C-c-hhhhhcceeeEecCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKG------------LNK-VFFCCSDVS------K-L-QPIKSLCTVIQLLPPSKQE 59 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~------------~~~-~Il~~n~~~------~-i-~~l~SRc~~i~~~~~~~~~ 59 (137)
|++||...-....-++|.+++..... +-- .+|+|-+|+ | + +++|.|+..++|...+.++
T Consensus 959 IVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedE 1038 (4600)
T COG5271 959 IVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDE 1038 (4600)
T ss_pred EEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHH
Confidence 57888877777778999999875421 111 344554443 2 6 8999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CcHHHHHH
Q 042716 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSK-NNLRQAIR 96 (137)
Q Consensus 60 i~~~l~~i~~~egi~i~~~~l~~i~~~~~-gd~R~aln 96 (137)
+..+|.. +.++.+.-...|++... -+.|+-.+
T Consensus 1039 le~ILh~-----rc~iapSyakKiVeVyr~Ls~rRs~~ 1071 (4600)
T COG5271 1039 LEEILHG-----RCEIAPSYAKKIVEVYRGLSSRRSIN 1071 (4600)
T ss_pred HHHHHhc-----cCccCHHHHHHHHHHHHHhhhhhhHH
Confidence 9988864 56777777777776532 23444333
No 269
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=83.30 E-value=0.65 Score=33.65 Aligned_cols=55 Identities=13% Similarity=0.075 Sum_probs=33.3
Q ss_pred CcccccCcCCHHHH------HHHHHHHHhccC-CceEEEEeCCCCCc-hhhhhcce-eeEecCC
Q 042716 1 IILCEADKLSTDAL------LYMRWLLERYKG-LNKVFFCCSDVSKL-QPIKSLCT-VIQLLPP 55 (137)
Q Consensus 1 iiiDEid~l~~~~~------~~L~~~le~~~~-~~~~Il~~n~~~~i-~~l~SRc~-~i~~~~~ 55 (137)
++||||+..-+... ......+..+.. +.-++|+|-++..+ +.+|..+. .+.+..+
T Consensus 83 iviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 83 IVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 58999998733322 223355554433 34499999999999 99998763 4555444
No 270
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=82.79 E-value=6.6 Score=34.80 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=62.0
Q ss_pred CcccccCcCCHHH---------------HHHHHHHHHhccCCc--eEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHH
Q 042716 1 IILCEADKLSTDA---------------LLYMRWLLERYKGLN--KVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQE 59 (137)
Q Consensus 1 iiiDEid~l~~~~---------------~~~L~~~le~~~~~~--~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~ 59 (137)
|+|||+|.++..- .|.|+--|+-+..+. .|+.+||.+.-+ ++|+- |+ ..+.+..|+...
T Consensus 407 ifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~ 486 (774)
T KOG0731|consen 407 IFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKG 486 (774)
T ss_pred EEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhh
Confidence 5899999874321 456666666554443 355556666667 77765 44 578999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Q 042716 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNN 90 (137)
Q Consensus 60 i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd 90 (137)
-..+++..+.+-.+..++..+..++.+..|-
T Consensus 487 r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf 517 (774)
T KOG0731|consen 487 RASILKVHLRKKKLDDEDVDLSKLASLTPGF 517 (774)
T ss_pred hHHHHHHHhhccCCCcchhhHHHHHhcCCCC
Confidence 9999988777776665666677788776653
No 271
>COG1485 Predicted ATPase [General function prediction only]
Probab=82.61 E-value=2.1 Score=34.46 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=41.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHh-ccCCceEEEEeCCCCC---------------chhhhhcceeeEecCCCH
Q 042716 1 IILCEADKLSTDALLYMRWLLER-YKGLNKVFFCCSDVSK---------------LQPIKSLCTVIQLLPPSK 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~-~~~~~~~Il~~n~~~~---------------i~~l~SRc~~i~~~~~~~ 57 (137)
+++||.+-=.....--|.++++. +..++.++.|+|..+. |..|.++|.++++..+.+
T Consensus 134 LCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~~D 206 (367)
T COG1485 134 LCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGPVD 206 (367)
T ss_pred EEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCCcc
Confidence 47899888777777777777777 3556667777776531 367899999988887743
No 272
>PRK07952 DNA replication protein DnaC; Validated
Probab=82.32 E-value=1.8 Score=32.97 Aligned_cols=56 Identities=7% Similarity=0.008 Sum_probs=39.0
Q ss_pred CcccccCcCC--HHHHHHHHHHHHh-ccCCceEEEEeCCCCC-----c-hhhhhcc-----eeeEecCCC
Q 042716 1 IILCEADKLS--TDALLYMRWLLER-YKGLNKVFFCCSDVSK-----L-QPIKSLC-----TVIQLLPPS 56 (137)
Q Consensus 1 iiiDEid~l~--~~~~~~L~~~le~-~~~~~~~Il~~n~~~~-----i-~~l~SRc-----~~i~~~~~~ 56 (137)
++|||++... ...+..|..+++. +..+.+.|++||.... + ..+.||+ ..+.|...|
T Consensus 166 LvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 166 LVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCCc
Confidence 5899998864 3346678889986 3346789999997743 4 5666665 367777654
No 273
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=81.88 E-value=1.8 Score=30.55 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=21.3
Q ss_pred CcccccCcCCHHHH--HHHHHHHHhccCCceEEEEeCCCCC
Q 042716 1 IILCEADKLSTDAL--LYMRWLLERYKGLNKVFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid~l~~~~~--~~L~~~le~~~~~~~~Il~~n~~~~ 39 (137)
||+||+|-.++.+. ..+++..++ .+.+.+|+.+-.++.
T Consensus 99 II~DEcH~~Dp~sIA~rg~l~~~~~-~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 99 IIMDECHFTDPTSIAARGYLRELAE-SGEAKVIFMTATPPG 138 (148)
T ss_dssp EEECTTT--SHHHHHHHHHHHHHHH-TTS-EEEEEESS-TT
T ss_pred EEEeccccCCHHHHhhheeHHHhhh-ccCeeEEEEeCCCCC
Confidence 68999999998863 333444432 344577777766654
No 274
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.10 E-value=3 Score=32.88 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=32.8
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHhc-----cCCceEEEEeCCCCCc-hhhh
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLERY-----KGLNKVFFCCSDVSKL-QPIK 44 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~~-----~~~~~~Il~~n~~~~i-~~l~ 44 (137)
||+||+|.+. .+.|..++.++.+. .+|..++++||.+.-+ |+|.
T Consensus 274 iffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpall 334 (435)
T KOG0729|consen 274 IFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALL 334 (435)
T ss_pred EEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhc
Confidence 5889999883 33477788888764 4678899999988766 5554
No 275
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=79.74 E-value=2.9 Score=30.50 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=28.5
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+++||+|. |+..-...+...+.+...+..||++|...
T Consensus 162 ~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~ 199 (220)
T PF02463_consen 162 LILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNP 199 (220)
T ss_dssp EEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-H
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 47999997 67777888999999888888899888654
No 276
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=79.53 E-value=2 Score=37.70 Aligned_cols=84 Identities=13% Similarity=0.039 Sum_probs=52.1
Q ss_pred CcccccCcCCH--H--HHHHHHHHHHhc-cCCceEEEEeCCCCCc------hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLST--D--ALLYMRWLLERY-KGLNKVFFCCSDVSKL------QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~--~--~~~~L~~~le~~-~~~~~~Il~~n~~~~i------~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+.. . ....+.....+. +-++.++++|-++..+ +++.+-|...-|-+.+.+++... .+
T Consensus 641 ~viDEaw~ll~~~~~~~~~~i~~~~r~~RK~g~~~~~~TQ~~~D~~~~~~~~~il~n~~~~i~L~~~~~~~~~~----~~ 716 (797)
T TIGR02746 641 CIIDEAWSLLDGANPQAADFIETGYRRARKYGGAFITITQGIEDFYSSPEARAAYANSDWKIILRQSAESIAKL----KA 716 (797)
T ss_pred EEEecHHHHhhcccHHHHHHHHHHHHHHhhcCceEEEEEecHHHhccCHHHHHHHhcccceeeecCCHHHHHHH----Hh
Confidence 57999999976 2 234444444433 3356688888766433 57888886655555565554433 23
Q ss_pred HcCCCCCHHHHHHHHHHcC
Q 042716 70 QEGIQLPHQLAEKIADNSK 88 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~ 88 (137)
..++.+++.....|.+...
T Consensus 717 ~~~~~ls~~e~~~l~~~~~ 735 (797)
T TIGR02746 717 ENPFTFSPFEKRLIKSLRT 735 (797)
T ss_pred hCCCCCCHHHHHHHhccCC
Confidence 3457888888777765543
No 277
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=79.42 E-value=1 Score=37.47 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=41.8
Q ss_pred hhhhhcc-eeeEecCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHh
Q 042716 41 QPIKSLC-TVIQLLPPSKQEIVEVLEF-----------IAEQEG--IQLPHQLAEKIADNS---KNNLRQAIRSFEASRQ 103 (137)
Q Consensus 41 ~~l~SRc-~~i~~~~~~~~~i~~~l~~-----------i~~~eg--i~i~~~~l~~i~~~~---~gd~R~aln~L~~~~~ 103 (137)
|.+.-|+ .++.|++++.+++..+|.. .....+ +.+++++++.|++.+ +--.|.+-.+|+.+.+
T Consensus 427 PEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Ll 506 (564)
T KOG0745|consen 427 PEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLL 506 (564)
T ss_pred HHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 6666677 4799999999998888742 112223 357899999998763 2235555555665553
No 278
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.94 E-value=0.72 Score=36.94 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=35.5
Q ss_pred hhhhhcc-eeeEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc------CCcHHHHHH
Q 042716 41 QPIKSLC-TVIQLLPPSKQEIVEVLE-----------FIAEQEGI--QLPHQLAEKIADNS------KNNLRQAIR 96 (137)
Q Consensus 41 ~~l~SRc-~~i~~~~~~~~~i~~~l~-----------~i~~~egi--~i~~~~l~~i~~~~------~gd~R~aln 96 (137)
|.+.-|. .+..+.+++.+++..+|. ...+-+|+ .++++++..|++.+ .+-+|.++.
T Consensus 286 PEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E 361 (408)
T COG1219 286 PEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIE 361 (408)
T ss_pred HHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 5666666 456778888888777763 22334454 46788988888653 234555554
No 279
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=78.62 E-value=1.6 Score=31.15 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=25.7
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~~ 39 (137)
+++||+|.+.... ...+..++...+..+++++.|..+++
T Consensus 147 lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 147 LVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred EEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCH
Confidence 5799999987443 44455566665666777766666553
No 280
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=78.21 E-value=3 Score=33.38 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=46.0
Q ss_pred CcccccCcCC--------HH---HHHHHHHHHHhcc-----CCceEEEEeCCCCCc-hhhhh--cce-eeEecCCCHHHH
Q 042716 1 IILCEADKLS--------TD---ALLYMRWLLERYK-----GLNKVFFCCSDVSKL-QPIKS--LCT-VIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~--------~~---~~~~L~~~le~~~-----~~~~~Il~~n~~~~i-~~l~S--Rc~-~i~~~~~~~~~i 60 (137)
+||||+|... .+ -|..|-.++++.. ..+++|+++|.++-+ ++|.- |.- .+..+-|+...-
T Consensus 229 ifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r 308 (388)
T KOG0651|consen 229 IFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQAR 308 (388)
T ss_pred EeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhc
Confidence 5889999862 22 2444544444332 367899999999887 66654 332 233322332222
Q ss_pred HHHHHHHH---HHcCCCCCHHHHHHHHHHcCC
Q 042716 61 VEVLEFIA---EQEGIQLPHQLAEKIADNSKN 89 (137)
Q Consensus 61 ~~~l~~i~---~~egi~i~~~~l~~i~~~~~g 89 (137)
..+++-.+ .+.| .++.+++-.+.+.++|
T Consensus 309 ~~I~Kih~~~i~~~G-eid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 309 LGILKIHVQPIDFHG-EIDDEAILKLVDGFNG 339 (388)
T ss_pred eeeEeeccccccccc-cccHHHHHHHHhccCh
Confidence 22221111 1111 3556666666666655
No 281
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=78.12 E-value=2.9 Score=36.16 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=37.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCCC-------------Cc-hhhhhcce
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDVS-------------KL-QPIKSLCT 48 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~~-------------~i-~~l~SRc~ 48 (137)
++|||.|.|+....-|+..+||+-. ..|.++-++|..+ .+ ..|+||+-
T Consensus 402 VCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFD 476 (818)
T KOG0479|consen 402 VCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFD 476 (818)
T ss_pred EEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhc
Confidence 5899999999999999999999653 2455777777432 26 78999973
No 282
>PF12846 AAA_10: AAA-like domain
Probab=77.79 E-value=3.4 Score=31.02 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=43.5
Q ss_pred CcccccCcCCHH--HHHHHHHHHHhc-cCCceEEEEeCCCCCc------hhhhhcceeeEecCCCHHHHHH
Q 042716 1 IILCEADKLSTD--ALLYMRWLLERY-KGLNKVFFCCSDVSKL------QPIKSLCTVIQLLPPSKQEIVE 62 (137)
Q Consensus 1 iiiDEid~l~~~--~~~~L~~~le~~-~~~~~~Il~~n~~~~i------~~l~SRc~~i~~~~~~~~~i~~ 62 (137)
+++||+|.+... ....+..++.+. +-++.+++++.++..+ +.+.+-|..+-+-+.++.+...
T Consensus 224 i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~ 294 (304)
T PF12846_consen 224 IVIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAE 294 (304)
T ss_pred EEeCCccccccccchhhhhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHH
Confidence 579999999765 455555666553 3456688888877554 4788899877777777766555
No 283
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=77.45 E-value=4.6 Score=33.17 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=28.0
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCce-EEEEeCCCCCc
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNK-VFFCCSDVSKL 40 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~-~Il~~n~~~~i 40 (137)
+++||+|++-... -..|-++++..|.... |++.++-+.++
T Consensus 208 LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv 249 (476)
T KOG0330|consen 208 LVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKV 249 (476)
T ss_pred HhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhh
Confidence 4799999997666 4456677777665444 77777766655
No 284
>PRK10536 hypothetical protein; Provisional
Probab=77.37 E-value=2.6 Score=32.55 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=26.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~ 36 (137)
||+||+++++......++.-+ ..++.+|++.+.
T Consensus 180 vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~ 212 (262)
T PRK10536 180 VILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDI 212 (262)
T ss_pred EEEechhcCCHHHHHHHHhhc---CCCCEEEEeCCh
Confidence 689999999997766666555 578889998863
No 285
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=76.87 E-value=1.8 Score=36.77 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=37.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCCC-----------C--c-hhhhhcc-eeeEe
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDVS-----------K--L-QPIKSLC-TVIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~~-----------~--i-~~l~SRc-~~i~~ 52 (137)
++|||.|.|..+..=|....||+-. ..|.++-++|..+ . . ++|+||+ .+|-+
T Consensus 432 vCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIV 511 (729)
T KOG0481|consen 432 VCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIV 511 (729)
T ss_pred EEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEE
Confidence 5799999999999999999999653 1233555566442 1 4 8999998 44444
Q ss_pred c
Q 042716 53 L 53 (137)
Q Consensus 53 ~ 53 (137)
+
T Consensus 512 K 512 (729)
T KOG0481|consen 512 K 512 (729)
T ss_pred e
Confidence 3
No 286
>PRK04296 thymidine kinase; Provisional
Probab=76.73 E-value=4.2 Score=29.35 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=26.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~ 36 (137)
|+|||++.++.+....|.+.+. +.+..+|++..+
T Consensus 82 viIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~ 115 (190)
T PRK04296 82 VLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLD 115 (190)
T ss_pred EEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecC
Confidence 5899999998776666666665 557788888866
No 287
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=76.35 E-value=30 Score=25.99 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=41.0
Q ss_pred cccccCcCCHHHHHHHHHHHHh-------c-------------cCCceEEEEeCCC----CCc-hhhhhcceeeEecCCC
Q 042716 2 ILCEADKLSTDALLYMRWLLER-------Y-------------KGLNKVFFCCSDV----SKL-QPIKSLCTVIQLLPPS 56 (137)
Q Consensus 2 iiDEid~l~~~~~~~L~~~le~-------~-------------~~~~~~Il~~n~~----~~i-~~l~SRc~~i~~~~~~ 56 (137)
++||+++|+.+....+-..+.. . .+++.+++|.|.. ..+ +.|++-+..+.+..|+
T Consensus 89 cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD 168 (231)
T PF12774_consen 89 CFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPD 168 (231)
T ss_dssp EEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCC
Confidence 6899999998874333222221 1 1245666676643 348 8999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 042716 57 KQEIVEVLEFIAEQEGIQ 74 (137)
Q Consensus 57 ~~~i~~~l~~i~~~egi~ 74 (137)
.+.+.+.+- -..|+.
T Consensus 169 ~~~I~ei~L---~s~GF~ 183 (231)
T PF12774_consen 169 LSLIAEILL---LSQGFK 183 (231)
T ss_dssp HHHHHHHHH---HCCCTS
T ss_pred HHHHHHHHH---HHcCch
Confidence 988877753 345664
No 288
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=75.87 E-value=1.7 Score=37.82 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=44.2
Q ss_pred cccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCC---C----------Cc-hhhhhcceeeE---
Q 042716 2 ILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDV---S----------KL-QPIKSLCTVIQ--- 51 (137)
Q Consensus 2 iiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~---~----------~i-~~l~SRc~~i~--- 51 (137)
+|||.|+|......+....||+-+ ..|.+|.++|.. + .+ .||.||+-++.
T Consensus 551 lIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvk 630 (854)
T KOG0477|consen 551 LIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVK 630 (854)
T ss_pred EeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeee
Confidence 699999999988888888888653 356688888852 1 36 89999974433
Q ss_pred --ecCCCHHHHHHHH
Q 042716 52 --LLPPSKQEIVEVL 64 (137)
Q Consensus 52 --~~~~~~~~i~~~l 64 (137)
+.+..++...+.+
T Consensus 631 D~vd~~~De~lA~fV 645 (854)
T KOG0477|consen 631 DTVDPVQDEKLAKFV 645 (854)
T ss_pred cccCchhHHHHHHHH
Confidence 4455555555444
No 289
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=75.44 E-value=5.8 Score=21.57 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHcCCcHHHHHHH
Q 042716 76 PHQLAEKIADNSKNNLRQAIRS 97 (137)
Q Consensus 76 ~~~~l~~i~~~~~gd~R~aln~ 97 (137)
...+++.+.+.|+||+-+|+..
T Consensus 16 kr~~Le~iL~~C~GDvv~AIE~ 37 (39)
T PF03474_consen 16 KRSVLELILQRCNGDVVQAIEQ 37 (39)
T ss_pred ChHHHHHHHHHcCCcHHHHHHH
Confidence 4678999999999999998864
No 290
>PHA00729 NTP-binding motif containing protein
Probab=74.08 E-value=3.3 Score=31.27 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=25.2
Q ss_pred c-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 40 L-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 40 i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
+ +.++|||..+.|.+++.+++..+|+.
T Consensus 111 L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 111 IYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred HHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 7 99999999999999999999998865
No 291
>PTZ00424 helicase 45; Provisional
Probab=73.46 E-value=2.5 Score=33.66 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=26.9
Q ss_pred CcccccCcCCHH-HHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTD-ALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~-~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+||||+|.+... ....+..++...+.+.++++.+...+
T Consensus 174 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 212 (401)
T PTZ00424 174 FILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP 212 (401)
T ss_pred EEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC
Confidence 589999998653 34567777777677777777766554
No 292
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=73.22 E-value=3.6 Score=29.87 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=26.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+||||+-.++......|++.++ ..++++||+....
T Consensus 97 liVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 97 LIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp EEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred EEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 5899999999999999988887 4578899998765
No 293
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=73.05 E-value=2.1 Score=31.83 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=19.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
||+||++++++.....+ +-+...++.+|++.+..
T Consensus 123 iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 123 IIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDPS 156 (205)
T ss_dssp EEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE---
T ss_pred EEEecccCCCHHHHHHH---HcccCCCcEEEEecCce
Confidence 68999999999765555 44446688999988654
No 294
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=72.68 E-value=5.4 Score=28.41 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=37.1
Q ss_pred CcccccCcC---CHHHHHHHHHHHHhccCCceEEEEeCCC--CCc-hhhhhc--ceeeEecCCCHHHHHH
Q 042716 1 IILCEADKL---STDALLYMRWLLERYKGLNKVFFCCSDV--SKL-QPIKSL--CTVIQLLPPSKQEIVE 62 (137)
Q Consensus 1 iiiDEid~l---~~~~~~~L~~~le~~~~~~~~Il~~n~~--~~i-~~l~SR--c~~i~~~~~~~~~i~~ 62 (137)
++|||+=.| ++.-++++.++++ ++.++|.+-... ..+ ..+++| +.++.+.+-+.+.+..
T Consensus 99 iviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~~ 165 (168)
T PF03266_consen 99 IVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALPE 165 (168)
T ss_dssp EEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHHH
T ss_pred EEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHhh
Confidence 579999887 6666888999997 345555554443 345 999999 8999998887766544
No 295
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.47 E-value=26 Score=31.51 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=38.5
Q ss_pred ceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHHHHHHHHHHHHcCC
Q 042716 28 NKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEIVEVLEFIAEQEGI 73 (137)
Q Consensus 28 ~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i~~~l~~i~~~egi 73 (137)
..||.+|+...++ +.++|-+ ..++++.|+++|...+|++.+...-+
T Consensus 534 ~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~ 581 (953)
T KOG0736|consen 534 VIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPL 581 (953)
T ss_pred eEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcccc
Confidence 3477778888999 8999887 57999999999999999998876654
No 296
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=72.31 E-value=4.2 Score=37.30 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=27.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-cCCce-EEEEeCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-KGLNK-VFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-~~~~~-~Il~~n~~~ 38 (137)
+||||+|..++.....|.++++-. .-+++ ++++++=|+
T Consensus 597 lVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 597 LILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPP 636 (1110)
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 589999999999999999998832 22344 555555543
No 297
>PHA02774 E1; Provisional
Probab=71.65 E-value=5.1 Score=34.49 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=44.6
Q ss_pred cccccCcC-CHHHHHHHHHHHHhcc-------------CCceEEEEeCCCCC----chhhhhcceeeEecCC--------
Q 042716 2 ILCEADKL-STDALLYMRWLLERYK-------------GLNKVFFCCSDVSK----LQPIKSLCTVIQLLPP-------- 55 (137)
Q Consensus 2 iiDEid~l-~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~~~----i~~l~SRc~~i~~~~~-------- 55 (137)
++||+-.- ..-....|+.+++-.+ ...|+|+|+|.... ...|.||...|+|+.+
T Consensus 484 vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~~P~d~~G~ 563 (613)
T PHA02774 484 LLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNPFPLDENGN 563 (613)
T ss_pred EEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCCCCcCCCCC
Confidence 57777111 1122446777776331 12679999996633 3899999999888754
Q ss_pred -----CHHHHHHHHHHHHHHcCC
Q 042716 56 -----SKQEIVEVLEFIAEQEGI 73 (137)
Q Consensus 56 -----~~~~i~~~l~~i~~~egi 73 (137)
++..+....++...+-++
T Consensus 564 P~f~ltd~~WKsFF~rlw~~LdL 586 (613)
T PHA02774 564 PVFELTDANWKSFFERLWSQLDL 586 (613)
T ss_pred EeeeeCchhHHHHHHHHHHHcCC
Confidence 445666666665555444
No 298
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=71.62 E-value=4.2 Score=32.97 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=26.5
Q ss_pred CcccccCcC----CHHHHHHHHHHHHhccCCceEEEEeCCCCCc
Q 042716 1 IILCEADKL----STDALLYMRWLLERYKGLNKVFFCCSDVSKL 40 (137)
Q Consensus 1 iiiDEid~l----~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i 40 (137)
+||||+|.. ++.-+.|+.+... ..+..+.|+++.+.++
T Consensus 206 liIDEVDAFP~~~d~~L~~Av~~ark--~~g~~IylTATp~k~l 247 (441)
T COG4098 206 LIIDEVDAFPFSDDQSLQYAVKKARK--KEGATIYLTATPTKKL 247 (441)
T ss_pred EEEeccccccccCCHHHHHHHHHhhc--ccCceEEEecCChHHH
Confidence 589999998 4444777777665 4456678888777443
No 299
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=71.30 E-value=14 Score=30.06 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=43.5
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhcc-CCce--EEEEeCCC---CCc-hhhhhcc---eeeEecCCCHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYK-GLNK--VFFCCSDV---SKL-QPIKSLC---TVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~-~~~~--~Il~~n~~---~~i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~ 68 (137)
+|+||+|...+.. |..|+...+... ...| +|..|... ..+ +..+||+ +++-+++.+-++..+..+...
T Consensus 141 FIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 141 FILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 4789999997766 666666666432 2344 33333222 347 8999998 366666777777777776543
No 300
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=70.63 E-value=3 Score=29.97 Aligned_cols=37 Identities=8% Similarity=-0.069 Sum_probs=25.8
Q ss_pred CcccccCcC--CHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKL--STDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l--~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+||||+-.. +......|+.+++.--.+.+.|+|||..
T Consensus 112 LilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 112 LILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp EEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 478888664 5556777888888755566889999966
No 301
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=70.14 E-value=11 Score=20.24 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 042716 74 QLPHQLAEKIADNSKNNLRQAIRSFEA 100 (137)
Q Consensus 74 ~i~~~~l~~i~~~~~gd~R~aln~L~~ 100 (137)
.++.+.+......++||+-.+++.|-.
T Consensus 14 ~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 14 DLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp SS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 578899999999999999999988743
No 302
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=69.40 E-value=22 Score=30.67 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=59.8
Q ss_pred CcccccCcC----------CHHHHHHHHHHHHhccCCce--EEEEeCCCCC-c-h-hhhhcc-eeeEecCCCH-HHHHHH
Q 042716 1 IILCEADKL----------STDALLYMRWLLERYKGLNK--VFFCCSDVSK-L-Q-PIKSLC-TVIQLLPPSK-QEIVEV 63 (137)
Q Consensus 1 iiiDEid~l----------~~~~~~~L~~~le~~~~~~~--~Il~~n~~~~-i-~-~l~SRc-~~i~~~~~~~-~~i~~~ 63 (137)
|++|++++| +...-++|+-.+++.|+..+ ||++|++... + . .+.+-+ ..+.++.++. ++..++
T Consensus 602 ivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~v 681 (744)
T KOG0741|consen 602 IVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEV 681 (744)
T ss_pred EEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHH
Confidence 578888886 34447788888877665544 6666655533 2 1 232222 4678888877 666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHhc
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADNSK-----NNLRQAIRSFEASRQM 104 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~~~-----gd~R~aln~L~~~~~~ 104 (137)
|.+ -++ ++++....++..-. --+.+++.++++....
T Consensus 682 l~~----~n~-fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q~ 722 (744)
T KOG0741|consen 682 LEE----LNI-FSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQD 722 (744)
T ss_pred HHH----ccC-CCcchhHHHHHHHhccccchhHHHHHHHHHHHhcc
Confidence 654 232 44555555554322 2388889888888743
No 303
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=69.36 E-value=2.7 Score=35.82 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.8
Q ss_pred cccccCcCCHHHHHHHHHHHHhcc
Q 042716 2 ILCEADKLSTDALLYMRWLLERYK 25 (137)
Q Consensus 2 iiDEid~l~~~~~~~L~~~le~~~ 25 (137)
+|||.|.|......+...+||+-+
T Consensus 444 CIDEfDKM~e~DRtAIHEVMEQQT 467 (721)
T KOG0482|consen 444 CIDEFDKMDESDRTAIHEVMEQQT 467 (721)
T ss_pred eehhhhhhhhhhhHHHHHHHHhhh
Confidence 699999999999999999999753
No 304
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=68.77 E-value=5.1 Score=36.08 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=31.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~ 36 (137)
|++||||.=++..++.|+.++++.. +|+.||||+|.
T Consensus 664 VLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 664 VLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred EEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 5799999999999999999999764 47889999875
No 305
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=68.50 E-value=19 Score=22.52 Aligned_cols=52 Identities=8% Similarity=0.070 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHH
Q 042716 13 ALLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLE 65 (137)
Q Consensus 13 ~~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~ 65 (137)
+...+..+-..+ .++++|+.+++... . ..++..+.-+-.+|.+.+++..+++
T Consensus 58 ~~~~~~~i~~~~-~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 58 GLELLEQIRQIN-PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHHHHHHHHHHT-TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cccccccccccc-ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 344444444433 67888888866653 4 6776677778888889998887763
No 306
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=67.89 E-value=13 Score=32.14 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=55.2
Q ss_pred CcccccCcCCHH--------------HHHHHHHHHHhccCCceEEEEe--CCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLSTD--------------ALLYMRWLLERYKGLNKVFFCC--SDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~--------------~~~~L~~~le~~~~~~~~Il~~--n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+.+. .-|.|+--|+-+..+..+|+++ |-+.-+ ++|.- |+ ..+.+..|+-...
T Consensus 246 IFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gR 325 (596)
T COG0465 246 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGR 325 (596)
T ss_pred EEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhH
Confidence 589999998543 2566777777666655544443 333335 55442 33 5788888887877
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHc----CCcHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQL-AEKIADNS----KNNLRQAIR 96 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~-l~~i~~~~----~gd~R~aln 96 (137)
..+++..+++-.+. +++ +..+++.. ..|+-..+|
T Consensus 326 e~IlkvH~~~~~l~--~~Vdl~~iAr~tpGfsGAdL~nl~N 364 (596)
T COG0465 326 EQILKVHAKNKPLA--EDVDLKKIARGTPGFSGADLANLLN 364 (596)
T ss_pred HHHHHHHhhcCCCC--CcCCHHHHhhhCCCcccchHhhhHH
Confidence 88887555544443 221 33355553 345554443
No 307
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=67.84 E-value=5.3 Score=32.67 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=23.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCS 35 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n 35 (137)
|||||+++|++... ..++-+.-+++.++|+.|
T Consensus 355 iIIDEaQNLTphei---kTiltR~G~GsKIVl~gd 386 (436)
T COG1875 355 IIIDEAQNLTPHEL---KTILTRAGEGSKIVLTGD 386 (436)
T ss_pred EEEehhhccCHHHH---HHHHHhccCCCEEEEcCC
Confidence 58999999998654 444444456888888886
No 308
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=67.37 E-value=17 Score=27.95 Aligned_cols=69 Identities=9% Similarity=0.141 Sum_probs=42.4
Q ss_pred CcccccCcCCHHH------HHHHHHHHHhcc------------CCceEEEEeCCCC---Cc-hhhhhcceeeEecCCCHH
Q 042716 1 IILCEADKLSTDA------LLYMRWLLERYK------------GLNKVFFCCSDVS---KL-QPIKSLCTVIQLLPPSKQ 58 (137)
Q Consensus 1 iiiDEid~l~~~~------~~~L~~~le~~~------------~~~~~Il~~n~~~---~i-~~l~SRc~~i~~~~~~~~ 58 (137)
++|||++.-..+. .+.|+-.++... .++.|+.+++... .+ +.+.+.+.++.+..|+++
T Consensus 104 ~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~ 183 (272)
T PF12775_consen 104 LFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSDE 183 (272)
T ss_dssp EEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----TCC
T ss_pred EEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCChH
Confidence 4788888775442 456677776321 2445776666543 27 899999999999999999
Q ss_pred HHHHHHHHHHH
Q 042716 59 EIVEVLEFIAE 69 (137)
Q Consensus 59 ~i~~~l~~i~~ 69 (137)
.+..+...+..
T Consensus 184 sl~~If~~il~ 194 (272)
T PF12775_consen 184 SLNTIFSSILQ 194 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88887776655
No 309
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=65.97 E-value=16 Score=19.68 Aligned_cols=25 Identities=12% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHH
Q 042716 74 QLPHQLAEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 74 ~i~~~~l~~i~~~~~gd~R~aln~L 98 (137)
.++.+.+......++||+-.+++.|
T Consensus 15 ~l~~~~I~~~L~~~~g~ve~~i~~L 39 (43)
T smart00546 15 NLDEEVIKAVLEANNGNVEATINNL 39 (43)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5778889999999999999999876
No 310
>PHA00350 putative assembly protein
Probab=65.89 E-value=2.7 Score=34.40 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=32.7
Q ss_pred CcccccCcCCHHH-----------------------HHHHHHHHHhc-cCCceEEEEeCCCCCc-hhhhhcce
Q 042716 1 IILCEADKLSTDA-----------------------LLYMRWLLERY-KGLNKVFFCCSDVSKL-QPIKSLCT 48 (137)
Q Consensus 1 iiiDEid~l~~~~-----------------------~~~L~~~le~~-~~~~~~Il~~n~~~~i-~~l~SRc~ 48 (137)
|+|||++.+-+.. -......+.++ +.+.-|+|+|-++..| +.+|..+.
T Consensus 85 IViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~~Id~~iR~lvE 157 (399)
T PHA00350 85 YVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIRKIHSDIRAMIE 157 (399)
T ss_pred EEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHHHhhHHHHHhhh
Confidence 5899999883321 12344444443 3345599999999999 99998775
No 311
>PRK09694 helicase Cas3; Provisional
Probab=65.39 E-value=5.4 Score=35.90 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=26.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-cCCce-EEEEeCCCCCc-hhhh
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-KGLNK-VFFCCSDVSKL-QPIK 44 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-~~~~~-~Il~~n~~~~i-~~l~ 44 (137)
|||||||....-....|..+++.. ..+++ ++|+++-+..+ ..|.
T Consensus 443 vIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 443 LIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLL 489 (878)
T ss_pred EEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHH
Confidence 689999999887666666666543 22444 45555544434 4443
No 312
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=65.24 E-value=5.3 Score=34.50 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=24.1
Q ss_pred CcccccCcCCHH-HHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTD-ALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~-~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
|||||+|.|... ....+..+++..+....+++.+...
T Consensus 153 lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~ 190 (629)
T PRK11634 153 LVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190 (629)
T ss_pred EEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccC
Confidence 589999987543 3556777777766666645444443
No 313
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.12 E-value=26 Score=30.00 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=53.8
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCC---------Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVS---------KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~---------~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
+|+||||. +++....+.-+-+.+.+.++.++++|--|+ .+ +....--..-.+.+++.++...-|.+.
T Consensus 457 lIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad~H~~V~K~~~~~~T~s~V~~L~~eeRveEiARM-- 534 (557)
T COG0497 457 LIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMADTHFLVEKESEDGRTESRVRPLDKEERVEEIARM-- 534 (557)
T ss_pred EEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhhcceEEEEEecCCCceEEeeeeCCHhHHHHHHHHH--
Confidence 58999995 788888998888888888999999997663 24 444444456677778887544433322
Q ss_pred HcCCCCCHHHHH
Q 042716 70 QEGIQLPHQLAE 81 (137)
Q Consensus 70 ~egi~i~~~~l~ 81 (137)
--|.++++.++.
T Consensus 535 l~G~~iT~~a~a 546 (557)
T COG0497 535 LGGSEVTDEALA 546 (557)
T ss_pred hcCchhhHHHHH
Confidence 235566665543
No 314
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=65.07 E-value=51 Score=27.58 Aligned_cols=83 Identities=10% Similarity=0.031 Sum_probs=49.5
Q ss_pred HHHHHHHHhccCCc----eEEEEeCCCCCc-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH--------------HcC
Q 042716 15 LYMRWLLERYKGLN----KVFFCCSDVSKL-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE--------------QEG 72 (137)
Q Consensus 15 ~~L~~~le~~~~~~----~~Il~~n~~~~i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~--------------~eg 72 (137)
..|+..+.=.-..| .+|||||+..++ |+|.-+. ..+.+..=+.++......+... .++
T Consensus 322 SGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~ 401 (457)
T KOG0743|consen 322 SGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEE 401 (457)
T ss_pred HHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhc
Confidence 34666666544445 499999999999 9998843 4677766666655555444332 234
Q ss_pred CCCCHHHHHH-HHHHcCCcHHHHHHHH
Q 042716 73 IQLPHQLAEK-IADNSKNNLRQAIRSF 98 (137)
Q Consensus 73 i~i~~~~l~~-i~~~~~gd~R~aln~L 98 (137)
.+++|..+.. ++...+ |.-.++.-|
T Consensus 402 ~~~tPA~V~e~lm~~~~-dad~~lk~L 427 (457)
T KOG0743|consen 402 TEVTPAQVAEELMKNKN-DADVALKGL 427 (457)
T ss_pred CccCHHHHHHHHhhccc-cHHHHHHHH
Confidence 5666655444 444433 444444433
No 315
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=65.04 E-value=3.8 Score=36.00 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=32.2
Q ss_pred CcccccCcCCHH-HHHHHHHHHHhcc-CCceEEEEeCCCC-Cc-hhhhhcce
Q 042716 1 IILCEADKLSTD-ALLYMRWLLERYK-GLNKVFFCCSDVS-KL-QPIKSLCT 48 (137)
Q Consensus 1 iiiDEid~l~~~-~~~~L~~~le~~~-~~~~~Il~~n~~~-~i-~~l~SRc~ 48 (137)
+|+||+|.+..+ ...++.++++... .++++|+.|...+ .+ .-|.+++.
T Consensus 342 vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~ 393 (733)
T COG1203 342 VILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALG 393 (733)
T ss_pred hhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 589999999888 6667777666543 3556555555444 45 67777653
No 316
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=63.57 E-value=5 Score=33.73 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=43.7
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCce-EEEEeCCCCCc-----hhhhhcceeeEecCCCHHHHHHHH
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNK-VFFCCSDVSKL-----QPIKSLCTVIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~-~Il~~n~~~~i-----~~l~SRc~~i~~~~~~~~~i~~~l 64 (137)
+||||+|++..-. ...+.++++-.+.+.. ++|.++.+.++ -.|.+.|..+........+-.+.+
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l 304 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERL 304 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcc
Confidence 4899999985544 6667888877665444 99999999874 255566776666665555444444
No 317
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=63.22 E-value=9.4 Score=33.53 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=29.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+|+||++-+..++.++++.+|. ..++..|+++...
T Consensus 356 LIVDEAqFIk~~al~~ilp~l~--~~n~k~I~ISS~N 390 (738)
T PHA03368 356 LFVDEANFIRPDAVQTIMGFLN--QTNCKIIFVSSTN 390 (738)
T ss_pred EEEechhhCCHHHHHHHHHHHh--ccCccEEEEecCC
Confidence 5899999999999999999998 5577788887543
No 318
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=62.52 E-value=11 Score=22.82 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHH
Q 042716 62 EVLEFIAEQEGI-QLPHQLAEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 62 ~~l~~i~~~egi-~i~~~~l~~i~~~~~gd~R~aln~L~ 99 (137)
+.++.+|+.-|+ ++++++...++...+.-+|..+.--.
T Consensus 7 esvk~iAes~Gi~~l~de~a~~La~dveyrlreiiq~a~ 45 (66)
T PF02969_consen 7 ESVKDIAESLGISNLSDEAAKALAEDVEYRLREIIQEAL 45 (66)
T ss_dssp HHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888999 89999999999988888888876544
No 319
>PTZ00110 helicase; Provisional
Probab=62.50 E-value=5.8 Score=33.53 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=23.8
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~ 36 (137)
+||||+|.|.... ...+.+++........+++.+..
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT 317 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSAT 317 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeC
Confidence 5899999986543 45577777766555555544433
No 320
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=62.36 E-value=5.5 Score=32.72 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=24.3
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCce-EEEEeCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNK-VFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~-~Il~~n~~ 37 (137)
+||||+|.|.... ...+..+++..+.... +.++++-+
T Consensus 153 lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191 (456)
T ss_pred EEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCc
Confidence 5899999986543 5667777776665554 44444443
No 321
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=61.57 E-value=45 Score=22.18 Aligned_cols=49 Identities=20% Similarity=0.183 Sum_probs=36.6
Q ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 51 QLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 51 ~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
+|.+.+.++............+ +.+.....|++.++.|.-.+-.++...
T Consensus 43 kFsk~~~e~a~elve~L~~~~~--l~e~~a~~I~nL~P~~~dElrai~~~~ 91 (112)
T PRK14981 43 RFSKLDPEDAEELVEELLELEK--MKEKTAVKIADILPETRDELRAIFAKE 91 (112)
T ss_pred HHhCCCHHHHHHHHHHHHHccC--CCHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 4556667777777766665554 578889999999999988888777655
No 322
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.35 E-value=10 Score=26.01 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=32.2
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCC-ceEEEEeCCCCCchhhhhcc
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGL-NKVFFCCSDVSKLQPIKSLC 47 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~-~~~Il~~n~~~~i~~l~SRc 47 (137)
+++||.. .|+......+...+.+.... ..+++++.+..-++.+-++.
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i 150 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRV 150 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 4788887 67888888888888876443 55777777665554443333
No 323
>KOG4284 consensus DEAD box protein [Transcription]
Probab=61.21 E-value=6.3 Score=34.64 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=29.2
Q ss_pred CcccccCcCC--HHHHHHHHHHHHhccCCce-EEEEeCCCCCc
Q 042716 1 IILCEADKLS--TDALLYMRWLLERYKGLNK-VFFCCSDVSKL 40 (137)
Q Consensus 1 iiiDEid~l~--~~~~~~L~~~le~~~~~~~-~Il~~n~~~~i 40 (137)
+++||+|.|- +.-|+.+.++++..|.+.. +.+.++++..|
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nL 213 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNL 213 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhH
Confidence 4799999994 4559999999998777655 44445666543
No 324
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=61.11 E-value=32 Score=30.54 Aligned_cols=81 Identities=19% Similarity=0.090 Sum_probs=51.4
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhc-cCCceEEEEeCCC-----CCc-hhhhhccee-eEecCCCHHHHHHHHHHHHHH
Q 042716 1 IILCEADKLST--DALLYMRWLLERY-KGLNKVFFCCSDV-----SKL-QPIKSLCTV-IQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~-~~~~~~Il~~n~~-----~~i-~~l~SRc~~-i~~~~~~~~~i~~~l~~i~~~ 70 (137)
+++||+..+.. ..+..+...+... ..++.++++|.++ +.+ ++|...|.. +-++.+... +.. .
T Consensus 646 l~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn~~a~---~~y-----~ 717 (800)
T PRK13898 646 IVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPNLKAT---DIY-----R 717 (800)
T ss_pred EEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCChhhH---HHH-----H
Confidence 57999999844 4454555555443 3466688888766 347 899999976 555443322 211 2
Q ss_pred cCCCCCHHHHHHHHHHcCC
Q 042716 71 EGIQLPHQLAEKIADNSKN 89 (137)
Q Consensus 71 egi~i~~~~l~~i~~~~~g 89 (137)
+++.+++...+.|.+...|
T Consensus 718 ~~~gLt~~e~~~i~~~~~~ 736 (800)
T PRK13898 718 SVFMLSEREYILIKHTDPT 736 (800)
T ss_pred HHcCCCHHHHHHHhcCCcc
Confidence 4678899888888765443
No 325
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=60.59 E-value=2.1 Score=32.24 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=30.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPS 56 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~ 56 (137)
||+||+|.+.. ........+.......+++|+++....= ..+.+-+..+.....+
T Consensus 138 vIvDEaH~~k~-~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~ 193 (299)
T PF00176_consen 138 VIVDEAHRLKN-KDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFS 193 (299)
T ss_dssp EEETTGGGGTT-TTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCS
T ss_pred EEEeccccccc-ccccccccccccccceEEeeccccccccccccccchheeeccccc
Confidence 58999999942 2223333333344556677777755543 6666655555544444
No 326
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=60.33 E-value=12 Score=26.42 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=35.6
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceeeE
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVIQ 51 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i~ 51 (137)
+++||.- .|+..+...+.+.+.+... +..+|+++.+..-+..+-.|+..+.
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~ 172 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLK 172 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4678876 6888888888888887654 4567888777665555556665543
No 327
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=59.05 E-value=13 Score=27.41 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=36.4
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+......+|+++.+...++.+-+|+.++
T Consensus 165 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l 215 (242)
T TIGR03411 165 LLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVL 215 (242)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 4678875 4788888899888888766567888888776556666666544
No 328
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=58.45 E-value=15 Score=26.72 Aligned_cols=50 Identities=8% Similarity=0.119 Sum_probs=34.9
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+.+.+.+...+..+|+++.+...+..+-.|+..+
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l 205 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIM 205 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 4678864 4788889999999988766666788887776555555555433
No 329
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=57.60 E-value=13 Score=31.58 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=25.5
Q ss_pred CcccccCcCCHHH------HHHHHHHHHhccCCceEEEEeCCCCCc-hhhhh
Q 042716 1 IILCEADKLSTDA------LLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKS 45 (137)
Q Consensus 1 iiiDEid~l~~~~------~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~S 45 (137)
|+|||+|.++.-. ...|..+.+.++....+.|+++.+... ..+..
T Consensus 131 iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~ 182 (591)
T TIGR01389 131 VAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRE 182 (591)
T ss_pred EEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHH
Confidence 5899999986421 234555555555444455565655444 44443
No 330
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=57.46 E-value=37 Score=29.75 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=48.1
Q ss_pred CcccccCcCC--HHHHHHHHHHHHhcc-CCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 1 IILCEADKLS--TDALLYMRWLLERYK-GLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 1 iiiDEid~l~--~~~~~~L~~~le~~~-~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
++|||++.+. +.....+..++.+.. .++.++++|-++. .. +++.+-|...-|-+.+.++...+..
T Consensus 633 i~iDEa~~ll~~~~~~~~i~~~~r~~RK~~~~~~~~TQ~~~d~~~~~~~~~il~n~~~ki~l~~~~~~~~~~~~------ 706 (785)
T TIGR00929 633 IIIDEAWQYLGNPVFAAKIRDWLKTLRKANGIVVLATQSINDALGSRIADSILEQCATKIFLPNPEADREDYAE------ 706 (785)
T ss_pred EEEechhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHHhCCEEEEcCCCCCCHHHHHH------
Confidence 5799999984 445555655555433 4566888887663 45 7788888643343444333333322
Q ss_pred CCCCCHHHHHHHHH
Q 042716 72 GIQLPHQLAEKIAD 85 (137)
Q Consensus 72 gi~i~~~~l~~i~~ 85 (137)
.+.+++...+.|.+
T Consensus 707 ~~~ls~~e~~~i~~ 720 (785)
T TIGR00929 707 GFKLTEREFELLKS 720 (785)
T ss_pred HcCCCHHHHHHHHc
Confidence 23468888777766
No 331
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.97 E-value=13 Score=30.70 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=20.5
Q ss_pred CcccccCcCCHH------HHHHHHHHHHhccCCceE-EEEeCCCCCc
Q 042716 1 IILCEADKLSTD------ALLYMRWLLERYKGLNKV-FFCCSDVSKL 40 (137)
Q Consensus 1 iiiDEid~l~~~------~~~~L~~~le~~~~~~~~-Il~~n~~~~i 40 (137)
++|||+|.++.- ....|..+...++ +.++ .|+++-...+
T Consensus 131 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~l~lTAT~~~~~ 176 (470)
T TIGR00614 131 IAVDEAHCISQWGHDFRPDYKALGSLKQKFP-NVPIMALTATASPSV 176 (470)
T ss_pred EEEeCCcccCccccccHHHHHHHHHHHHHcC-CCceEEEecCCCHHH
Confidence 589999998642 2223333444444 4554 4444444333
No 332
>PHA02562 46 endonuclease subunit; Provisional
Probab=56.22 E-value=24 Score=29.48 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=33.6
Q ss_pred Cccccc-C-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEA-D-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEi-d-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||. + .|+......+..++.+. .+..+|+++... .+...-.|+..+
T Consensus 500 lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~-~~~~~~d~~~~l 549 (562)
T PHA02562 500 LILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKD-HDPQKFDRHLKM 549 (562)
T ss_pred EEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECch-hchhhhhcEEEE
Confidence 478998 6 49999999999999987 455577777764 332333555433
No 333
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=56.07 E-value=89 Score=25.87 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=66.0
Q ss_pred CcccccCcCC---HHHHHHHHHHHHhccC-CceEEEEeCCCCCc-h-hhhhcc-eeeEecCCCHHHHHHHHHHHHH-HcC
Q 042716 1 IILCEADKLS---TDALLYMRWLLERYKG-LNKVFFCCSDVSKL-Q-PIKSLC-TVIQLLPPSKQEIVEVLEFIAE-QEG 72 (137)
Q Consensus 1 iiiDEid~l~---~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i-~-~l~SRc-~~i~~~~~~~~~i~~~l~~i~~-~eg 72 (137)
+++|.+|.+. +.-.+.|++.-|-.+. ++.|+++....++. . ..---| .++.|+.++.+++..++.+--- +.+
T Consensus 119 liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~ 198 (438)
T KOG2543|consen 119 LILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRK 198 (438)
T ss_pred EEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccc
Confidence 5789999884 3335555555554333 55577776655543 1 111122 5799999999998888754111 111
Q ss_pred CCCCHHHHHHHH---HHcCCcHHHHHHHHHHHHhcCC-CcccCccccCC
Q 042716 73 IQLPHQLAEKIA---DNSKNNLRQAIRSFEASRQMNY-PFVEGQVILTG 117 (137)
Q Consensus 73 i~i~~~~l~~i~---~~~~gd~R~aln~L~~~~~~~~-~~~~~~~~~~~ 117 (137)
.++-..-+..+. ...-+|++....++...+..-. ++++.++..++
T Consensus 199 ~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~wpky~epi~~~~i~~~d 247 (438)
T KOG2543|consen 199 LDVYAQFLHVLLQVFYMACRDVNELRSLISLAWPKYCEPITKGKIDPTD 247 (438)
T ss_pred hHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhccccccCCCChhH
Confidence 111111222222 2234599999998888876443 46655554444
No 334
>PHA01513 mnt Mnt
Probab=55.94 E-value=21 Score=22.68 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 042716 58 QEIVEVLEFIAEQEGIQLPHQLAEKIADNS 87 (137)
Q Consensus 58 ~~i~~~l~~i~~~egi~i~~~~l~~i~~~~ 87 (137)
+++...|+..|+++|.+++.+.+..|-...
T Consensus 14 ~eLk~rL~~aA~~nGRSmNaeIv~~Le~al 43 (82)
T PHA01513 14 YELKEKLKQRAKANGRSLNAELVQIVQDAL 43 (82)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 458999999999999999998877776654
No 335
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=55.59 E-value=17 Score=32.09 Aligned_cols=35 Identities=29% Similarity=0.197 Sum_probs=29.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+++||+.-+..++..+++.++. ..++++|+++...
T Consensus 298 LIVDEAAfI~~~~l~aIlP~l~--~~~~k~IiISS~~ 332 (752)
T PHA03333 298 VIVDEAAFVNPGALLSVLPLMA--VKGTKQIHISSPV 332 (752)
T ss_pred EEEECcccCCHHHHHHHHHHHc--cCCCceEEEeCCC
Confidence 5899999999999999999998 4577877776544
No 336
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=55.50 E-value=15 Score=33.75 Aligned_cols=38 Identities=11% Similarity=0.243 Sum_probs=25.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~ 39 (137)
||+||+|.+-... ..+.+.+.......+++||++....
T Consensus 295 VIvDEAHrIKN~~-Sklskalr~L~a~~RLLLTGTPlqN 332 (1033)
T PLN03142 295 IIIDEAHRIKNEN-SLLSKTMRLFSTNYRLLITGTPLQN 332 (1033)
T ss_pred EEEcCccccCCHH-HHHHHHHHHhhcCcEEEEecCCCCC
Confidence 5899999995432 2344455555667788888876643
No 337
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=55.24 E-value=16 Score=27.11 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=36.7
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeE
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQ 51 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~ 51 (137)
+++||.- .|+..++..+...+.+......+|+++.+..-+..+-.|+.++.
T Consensus 169 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~ 220 (251)
T PRK14251 169 VLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLM 220 (251)
T ss_pred EEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEE
Confidence 4678875 57888899998888877555668888887766555556665543
No 338
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=55.09 E-value=17 Score=27.03 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=35.9
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+..++..+...+.+......+|+++.+...+..+-.|+.++
T Consensus 167 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 167 ILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEE
Confidence 46788654 788888888888888765566888888776556666666444
No 339
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=54.96 E-value=11 Score=33.60 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=31.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~ 39 (137)
+||||+|++-. -...|.+++.++....++++|++..+.
T Consensus 293 lvIDEaHRiKN-~~s~L~~~lr~f~~~nrLLlTGTPLQN 330 (971)
T KOG0385|consen 293 LVIDEAHRIKN-EKSKLSKILREFKTDNRLLLTGTPLQN 330 (971)
T ss_pred EEechhhhhcc-hhhHHHHHHHHhcccceeEeeCCcccc
Confidence 58999999953 455677999999999999999987754
No 340
>PHA02558 uvsW UvsW helicase; Provisional
Probab=54.84 E-value=10 Score=31.58 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=20.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-CCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-GLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~ 37 (137)
||+||+|.+...... .+++..+ ....+-|+++-.
T Consensus 226 iIvDEaH~~~~~~~~---~il~~~~~~~~~lGLTATp~ 260 (501)
T PHA02558 226 VIVDECHLFTGKSLT---SIITKLDNCKFKFGLTGSLR 260 (501)
T ss_pred EEEEchhcccchhHH---HHHHhhhccceEEEEeccCC
Confidence 589999999865544 4444332 233466666643
No 341
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=54.62 E-value=10 Score=26.96 Aligned_cols=48 Identities=15% Similarity=0.018 Sum_probs=33.3
Q ss_pred CcccccCcCCHH---HHHHHHHHHHhccCCceEEEEeCCCCC-c---hhhhhcce
Q 042716 1 IILCEADKLSTD---ALLYMRWLLERYKGLNKVFFCCSDVSK-L---QPIKSLCT 48 (137)
Q Consensus 1 iiiDEid~l~~~---~~~~L~~~le~~~~~~~~Il~~n~~~~-i---~~l~SRc~ 48 (137)
+||||+=..-+- ..+.+..++++-+.++.+|+|+.+++. + .++.+-+.
T Consensus 99 lVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~ 153 (159)
T cd00561 99 VILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMR 153 (159)
T ss_pred EEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecc
Confidence 467887654222 266788889888889999999998875 2 45555443
No 342
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=54.31 E-value=18 Score=27.09 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=36.0
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..+...+.+.+.+......+|+++.+...+..+-.|+.++
T Consensus 170 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 170 LLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4678876 5788888888888887655566888888776555555666554
No 343
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=54.21 E-value=61 Score=21.89 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 042716 54 PPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 54 ~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~ 99 (137)
.++.+++.-. +++-|+ +.+.....+..++||+..|+..|+
T Consensus 74 ~i~~edI~lv----~~q~gv--s~~~A~~AL~~~~gDl~~AI~~L~ 113 (115)
T PRK06369 74 EIPEEDIELV----AEQTGV--SEEEARKALEEANGDLAEAILKLS 113 (115)
T ss_pred CCCHHHHHHH----HHHHCc--CHHHHHHHHHHcCCcHHHHHHHHh
Confidence 3555554443 334554 556667777888899988887775
No 344
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=53.84 E-value=43 Score=25.10 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=31.4
Q ss_pred cCCceEEEEeCCCCC-c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCC
Q 042716 25 KGLNKVFFCCSDVSK-L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLP 76 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~-i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~ 76 (137)
.++.+++++|..+.. + |.+.+|+.+++|.--...--...+..+.+.|.-++.
T Consensus 119 ~~~FrL~L~T~~~~p~~~pe~~s~vtviNFtvt~~gLe~qll~~vv~~e~PeLe 172 (228)
T PF12781_consen 119 NPNFRLYLTTKLPNPHYPPEVSSKVTVINFTVTQEGLEDQLLSIVVKHERPELE 172 (228)
T ss_dssp -SS-EEEEEESSTTSHHHHHHHHCSEEEE----CHHHHHHHHHHHHHHHCHHHH
T ss_pred eccceEEEeecCCCCCCChhhhceeeEEEEEecHHHHHHHHHHHHHHHHhHHHH
Confidence 457888999987754 6 999999999999666554333444455555643333
No 345
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=53.79 E-value=21 Score=25.43 Aligned_cols=51 Identities=8% Similarity=0.020 Sum_probs=33.6
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCC-ceEEEEeCCCCCchhhhhcceeeEe
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGL-NKVFFCCSDVSKLQPIKSLCTVIQL 52 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~-~~~Il~~n~~~~i~~l~SRc~~i~~ 52 (137)
+++||.+. ++...+..+.+.+.+...+ ..+|+++.+...+. .-.|+..+..
T Consensus 120 lilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 120 YVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 47899884 6888888887777765443 56888877654333 4556655544
No 346
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=53.78 E-value=17 Score=26.14 Aligned_cols=50 Identities=4% Similarity=0.040 Sum_probs=33.6
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+... +..+|+++.+...+..+-.|..++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4678875 6788888888888887643 455777777665555555554443
No 347
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=53.53 E-value=24 Score=25.57 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=29.5
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+++||... ++...+..+...+.+...+..+|+++.+..
T Consensus 139 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~ 177 (197)
T cd03278 139 CVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKG 177 (197)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 46788874 688889999999988765666888877764
No 348
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=52.41 E-value=30 Score=25.35 Aligned_cols=52 Identities=8% Similarity=0.009 Sum_probs=36.4
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeEec
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQLL 53 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~~~ 53 (137)
+++||... |++.....+...+.+......+|+++.. +.+..+-+||..+.+.
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~-~~~~~~~d~v~~~~~~ 205 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLR-NNMFELADRLVGIYKT 205 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECc-HHHHHhCCEEEEEEec
Confidence 36777765 6888888888888888777778888855 2334556666666553
No 349
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=52.37 E-value=21 Score=25.75 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=34.3
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+...+.+......+|+++.+...+..+-.|+.++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l 202 (211)
T cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVL 202 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 3667764 4788888899899888765566777776665555555565444
No 350
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.24 E-value=19 Score=26.82 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=35.1
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+...+..+|+++.+...+..+-+|+.++
T Consensus 171 llLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 171 ILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFM 221 (253)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEE
Confidence 4677765 4788888888888887765666888887776655555565443
No 351
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=52.23 E-value=19 Score=20.39 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042716 58 QEIVEVLEFIAEQEGIQLPHQLAEKIADN 86 (137)
Q Consensus 58 ~~i~~~l~~i~~~egi~i~~~~l~~i~~~ 86 (137)
+++.+.|+..|+.+|-+++.+.+..|-+.
T Consensus 13 ~~l~~~lk~~A~~~gRS~NsEIv~~L~~~ 41 (50)
T PF03869_consen 13 EELKEKLKERAEENGRSMNSEIVQRLEEA 41 (50)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 36899999999999999988876666543
No 352
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=52.09 E-value=26 Score=30.18 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=35.6
Q ss_pred cccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCc--hhhhhcc
Q 042716 2 ILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKL--QPIKSLC 47 (137)
Q Consensus 2 iiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i--~~l~SRc 47 (137)
+|+|.+. |++..|..|...++..+-....|+||+++.-+ .++-|-|
T Consensus 306 LiEEPEahLHPq~q~~l~~ll~~l~~~~Q~IvTThS~~~~s~~dl~si~ 354 (581)
T COG3593 306 LIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIVTTHSPHLLSLADLDSIC 354 (581)
T ss_pred EEeCchhhcCHHHHHHHHHHHhcCCcceEEEEEcCCcccccccCcccEE
Confidence 4556553 79999999999999877557799999988765 5676666
No 353
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=51.84 E-value=9.8 Score=32.81 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=29.4
Q ss_pred CcccccCcC-CHHHHHHHHHHHHhccCC-ceEEEEeCCCCCc
Q 042716 1 IILCEADKL-STDALLYMRWLLERYKGL-NKVFFCCSDVSKL 40 (137)
Q Consensus 1 iiiDEid~l-~~~~~~~L~~~le~~~~~-~~~Il~~n~~~~i 40 (137)
+++||+|+| ..+-...|..++|..|.. ..++|.++....+
T Consensus 219 LvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~sv 260 (758)
T KOG0343|consen 219 LVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSV 260 (758)
T ss_pred EEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhH
Confidence 489999998 445577899999986654 3477777766544
No 354
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=51.81 E-value=48 Score=24.45 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC
Q 042716 55 PSKQEIVEVLEFIAEQEGI-QLPHQLAEKIADNSKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 55 ~~~~~i~~~l~~i~~~egi-~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~ 105 (137)
++...+...+..++.+.|+ .++++++..|...+.--+|.++.-+-.++...
T Consensus 45 l~~~~l~~~~~~i~~~~g~~~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR 96 (212)
T cd08045 45 LNPSPLAKKIRKIAKKHGLKEVDEDVLDLISLALEERLRNLLEKLIEVSEHR 96 (212)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566788999999999999 89999999999999999999998887776543
No 355
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.71 E-value=22 Score=26.41 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=34.9
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+.+.+.+......+|+++.+...+..+-.|..++
T Consensus 168 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 168 ILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFM 218 (250)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEE
Confidence 4677775 4788888888888887765566888888776555555565443
No 356
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=51.50 E-value=67 Score=21.74 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 042716 55 PSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 55 ~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~ 99 (137)
++.+++.-.. ++-|+ +.+.....+..++||+..|+..|+
T Consensus 77 i~~eDI~lV~----eq~gv--s~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 77 ITEDDIELVM----KQCNV--SKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred CCHHHHHHHH----HHhCc--CHHHHHHHHHHcCCCHHHHHHHhh
Confidence 5666644433 34454 555666777778888888887664
No 357
>PF15610 PRTase_3: PRTase ComF-like
Probab=51.46 E-value=26 Score=27.25 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=54.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEE-eCCC-CCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFC-CSDV-SKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPH 77 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~-~n~~-~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~ 77 (137)
|++|++ ++|+.-...+++++.+..-...|++. .-++ ..+ |.|-+|.--+..+.+.+ +..++..+++.+..
T Consensus 142 IflDDI-kITGshE~~V~~~~~~~~~~~~~~yly~aeln~~i~p~IEn~lN~~~v~s~~D------l~~ii~~~~F~~n~ 214 (274)
T PF15610_consen 142 IFLDDI-KITGSHEDKVRKILKEYGLENDFIYLYYAELNKDIDPNIENRLNYVAVPSIKD------LAEIINSPNFQMNT 214 (274)
T ss_pred EEeccE-EecCcHHHHHHHHHHHcCccccEEEEEEecccccCCcchhhhhhhhccCcHHH------HHHHhcCCCcchhH
Confidence 456666 35667788888888876544443333 3343 446 89999886666644433 55666778888888
Q ss_pred HHHHHHHHHcCCcH
Q 042716 78 QLAEKIADNSKNNL 91 (137)
Q Consensus 78 ~~l~~i~~~~~gd~ 91 (137)
..+++|...-....
T Consensus 215 R~vKyiL~~d~~ef 228 (274)
T PF15610_consen 215 RIVKYILGADYAEF 228 (274)
T ss_pred HHHHHHHcCCHHHH
Confidence 88888865543333
No 358
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.34 E-value=22 Score=26.61 Aligned_cols=50 Identities=8% Similarity=0.137 Sum_probs=35.7
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+.+.+.+...+..+|+++.+..-+..+-.|+.++
T Consensus 177 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 177 LLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 4677765 4688888888888888765566888888776555566666544
No 359
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=51.04 E-value=63 Score=23.50 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=35.5
Q ss_pred CcccccCcC---CHHHHHHHHHHHHhccCCceEEEEe--CCCCCc-hhhhhcceeeE-ecCCCHHHHHHHH
Q 042716 1 IILCEADKL---STDALLYMRWLLERYKGLNKVFFCC--SDVSKL-QPIKSLCTVIQ-LLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l---~~~~~~~L~~~le~~~~~~~~Il~~--n~~~~i-~~l~SRc~~i~-~~~~~~~~i~~~l 64 (137)
|||||+--| ++.-..++..+++ ...|+|.+- ++.+.+ ..++++-.++- +.+-+.+.+...+
T Consensus 104 IIIDEIGpMElks~~f~~~ve~vl~---~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~I 171 (179)
T COG1618 104 IIIDEIGPMELKSKKFREAVEEVLK---SGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEI 171 (179)
T ss_pred EEEecccchhhccHHHHHHHHHHhc---CCCcEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHH
Confidence 589999888 4444555555554 344444444 333456 88999876555 5555555443333
No 360
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.90 E-value=23 Score=26.53 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=36.4
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeE
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQ 51 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~ 51 (137)
+++||.- .|+..++..+.+.+.+......+|++|.+..-+..+-.|..++.
T Consensus 172 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 172 LLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFS 223 (259)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEe
Confidence 4678876 57888888888888776555668888877766566666655554
No 361
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=50.65 E-value=22 Score=26.00 Aligned_cols=47 Identities=9% Similarity=-0.116 Sum_probs=28.8
Q ss_pred Ccccc-cCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcc
Q 042716 1 IILCE-ADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLC 47 (137)
Q Consensus 1 iiiDE-id~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc 47 (137)
+++|| ...+....+..+...+.+......+|+++.+...+..+-.|.
T Consensus 126 lllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i 173 (213)
T PRK15177 126 YIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAF 173 (213)
T ss_pred EEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCee
Confidence 47899 488888887777776643222334777776665443343443
No 362
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=50.54 E-value=36 Score=17.62 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 042716 72 GIQLPHQLAEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 72 gi~i~~~~l~~i~~~~~gd~R~aln~L 98 (137)
|+ +.+....-...++||+-.|++.|
T Consensus 13 Gf--~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 13 GF--SREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp TS---HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHHhC
Confidence 64 66677788889999999999875
No 363
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=50.46 E-value=28 Score=25.37 Aligned_cols=49 Identities=18% Similarity=0.020 Sum_probs=32.3
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhccee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~ 49 (137)
+++||.- .++......+...+++... +..+|+++.+..-+..+-.|+.+
T Consensus 155 lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~ 205 (213)
T cd03279 155 LFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEV 205 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEE
Confidence 4678776 5788888888888887754 45677777766433444444443
No 364
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=50.42 E-value=19 Score=26.77 Aligned_cols=50 Identities=6% Similarity=0.085 Sum_probs=35.3
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+.+.+.+... +..+|+++.+...+..+-.|..++
T Consensus 168 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T TIGR03005 168 MLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF 220 (252)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 4678876 5788888888888877543 566888888776555555665444
No 365
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=50.20 E-value=41 Score=25.45 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=34.1
Q ss_pred ecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHH
Q 042716 52 LLPPSKQEIVEVLEFIAEQEGI-QLPHQLAEKIADNSKNNLRQAI 95 (137)
Q Consensus 52 ~~~~~~~~i~~~l~~i~~~egi-~i~~~~l~~i~~~~~gd~R~al 95 (137)
..-|+.+.+..++..+|..+|+ .++.++++.+....+-=++.+|
T Consensus 200 ~~LPD~~~L~~Rm~~ia~e~GL~gvs~~~a~ll~~ale~~LK~lI 244 (252)
T PF12767_consen 200 GELPDTQSLRKRMEQIAWEHGLGGVSDDCANLLNLALEVHLKNLI 244 (252)
T ss_pred CcCCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3447888999999999999999 8899888887766654444444
No 366
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=50.13 E-value=11 Score=29.95 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=49.4
Q ss_pred CcccccCcCCHH--------HHHHHHHHHHhccCCceEEEEeCCCCCc-----------hhhhhc----c-----eeeEe
Q 042716 1 IILCEADKLSTD--------ALLYMRWLLERYKGLNKVFFCCSDVSKL-----------QPIKSL----C-----TVIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~--------~~~~L~~~le~~~~~~~~Il~~n~~~~i-----------~~l~SR----c-----~~i~~ 52 (137)
||+||+|+|... ..+.|..+++. ..+ +|+.-.+.+.| ..+... + ..-.|
T Consensus 87 iivDEAqrl~~~~~~~~~~~~~~~L~~i~~~--~kv-~v~f~D~~Q~i~~~e~~~~~~l~~~~~~~~~~~~~~~~L~~q~ 163 (352)
T PF09848_consen 87 IIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR--AKV-VVFFYDENQSIRPSEIGTLENLEEIAENLGIEVRHFFELKTQF 163 (352)
T ss_pred EEEehhHhhhhccccccccccHHHHHHHHhc--CCE-EEEEEccccEeecccCCCHHHHHHHHHhcCCccccCcCcCcce
Confidence 689999999873 24678888875 223 33332222211 111111 1 22245
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 53 LPPSKQEIVEVLEFIAEQEGIQLPHQ--LAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 53 ~~~~~~~i~~~l~~i~~~egi~i~~~--~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
+-...+++..++..+.......-.+. .-.+=+ ..-.|+..+...++...
T Consensus 164 R~~~~~~~~~wI~~ll~~~~~~~~~~~~~~~yd~-~~f~~~~~~~~~i~~k~ 214 (352)
T PF09848_consen 164 RCHGSKEYIDWIDNLLDNKNISPKPFNPDENYDF-RVFDSPEEMKEAIKEKN 214 (352)
T ss_pred ecCCCHHHHHHHHHHHhccccCccccccCCceeE-EEECCHHHHHHHHHHHh
Confidence 45556778888888876553321111 001111 12246666666666554
No 367
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=49.65 E-value=6.6 Score=33.47 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=33.6
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCce-EEEEeCCCCCchhhhhcc
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNK-VFFCCSDVSKLQPIKSLC 47 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~-~Il~~n~~~~i~~l~SRc 47 (137)
+++||+|+|-.++ +..+..++.-.+++.. ++|.++-..+++.|.|-+
T Consensus 331 LvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slS 379 (691)
T KOG0338|consen 331 LVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLS 379 (691)
T ss_pred EEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhh
Confidence 4899999998776 6667778776665433 777777666666666654
No 368
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=49.18 E-value=31 Score=24.89 Aligned_cols=52 Identities=19% Similarity=0.065 Sum_probs=34.7
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhc-cCCceEEEEeCCCCCchhhhhcceeeEecCCC
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERY-KGLNKVFFCCSDVSKLQPIKSLCTVIQLLPPS 56 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~-~~~~~~Il~~n~~~~i~~l~SRc~~i~~~~~~ 56 (137)
+++||.- .|+..+...+...+.+. ..+..+|+++.+..-++. ..++.+.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~----~~~~~~~~~~ 202 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG----ARELDLGPFA 202 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc----CcEEeecCcc
Confidence 4677776 57888888888888764 335668888888776643 3344554443
No 369
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=49.08 E-value=18 Score=26.47 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=37.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc---------------cCCceEEEEeCCCCCc-hhhhh-cceeeEecC
Q 042716 1 IILCEADKLSTDALLYMRWLLERY---------------KGLNKVFFCCSDVSKL-QPIKS-LCTVIQLLP 54 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~---------------~~~~~~Il~~n~~~~i-~~l~S-Rc~~i~~~~ 54 (137)
+.+||.+.+.+...+.|..++-.. +..+.||.+||...-+ .+--+ |..++++.+
T Consensus 99 veldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 99 VELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred eeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 458999999988888887776433 2344578888887767 43344 577777766
No 370
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=49.06 E-value=22 Score=26.43 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=35.4
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+......+|+++.+..-+..+-.|..++
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l 216 (247)
T TIGR00972 166 LLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFF 216 (247)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEE
Confidence 4678876 5788888888888887655566888887776555555665443
No 371
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=49.02 E-value=30 Score=24.12 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=29.6
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL 40 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i 40 (137)
+++||.- .|+......+.+.+.+......+|+++.+...+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 4678865 678888889988888776556677887776544
No 372
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=49.02 E-value=21 Score=33.09 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=30.8
Q ss_pred CcccccCcC-CHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKL-STDALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l-~~~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
.++||||.- +..-..-+-++|.+..+++.||++|-...
T Consensus 1092 ~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~ 1130 (1163)
T COG1196 1092 YVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKG 1130 (1163)
T ss_pred eeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChH
Confidence 479999985 55557778888988899999999997654
No 373
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=49.02 E-value=21 Score=26.88 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=36.0
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+...+.+... +..+|+++.+...+..+-+|+.++
T Consensus 165 lllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l 217 (265)
T PRK10253 165 MLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIAL 217 (265)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4678876 6888888888888887643 456888887776556666666444
No 374
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=48.92 E-value=24 Score=26.20 Aligned_cols=51 Identities=8% Similarity=0.107 Sum_probs=35.4
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeE
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQ 51 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~ 51 (137)
+++||.-. |+...+..+...+.+...+..+|+++.+..-+..+-+|+..+.
T Consensus 168 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~ 219 (250)
T PRK14245 168 LLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFY 219 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEE
Confidence 36777654 6788888888888876555667888877765566666765543
No 375
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=48.86 E-value=31 Score=24.80 Aligned_cols=52 Identities=12% Similarity=-0.046 Sum_probs=35.4
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhcc-CCceEEEEeCCCCCchhhhhcceeeEe
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYK-GLNKVFFCCSDVSKLQPIKSLCTVIQL 52 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~i~~l~SRc~~i~~ 52 (137)
+++||.- .|+...+..+...+.+.. .+..+|+++.+...++..=+||....|
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~~~ 200 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDLGF 200 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEeccC
Confidence 4678764 478888888888887653 345688888877766556666654444
No 376
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=48.70 E-value=1.2e+02 Score=23.84 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCccc
Q 042716 54 PPSKQEIVEVLEFIAEQEGI--------QLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVE 110 (137)
Q Consensus 54 ~~~~~~i~~~l~~i~~~egi--------~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~ 110 (137)
|+.+.++...+...+..+|. .++|... .+...+|.|+++..|+.....+.++++
T Consensus 116 p~~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A---~~i~pnd~~Ri~RALEv~~~tG~~~s~ 177 (300)
T PRK14729 116 PPVSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRY---ESINKNDIYRIKRSLEVYYQTGIPISQ 177 (300)
T ss_pred CCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHH---hhCCcCCHHHHHHHHHHHHHhCCChHh
Confidence 45566677777666665653 2334332 344789999999999998777766543
No 377
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=48.65 E-value=9.8 Score=31.14 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=23.3
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCce-EEEEeCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNK-VFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~-~Il~~n~~ 37 (137)
+|+||+|.|.... ...+..++...+.... ++++++-+
T Consensus 151 lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~ 189 (460)
T PRK11776 151 LVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP 189 (460)
T ss_pred EEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCc
Confidence 5899999885433 5556667766565555 44555544
No 378
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=48.65 E-value=26 Score=27.03 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=35.5
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- +|++.++..+...+.+......+|+++.+..-+..+-.|+.++
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l 205 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIII 205 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 3677764 4788888888888888766666788877776556666665443
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=48.49 E-value=41 Score=25.07 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=36.6
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeEec
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQLL 53 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~~~ 53 (137)
+++||.. .|+......+...+.+...+..+|+++... .+-..-.|+.-+.|.
T Consensus 192 lllDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~-~~~~~~d~v~~~~~~ 244 (251)
T cd03273 192 YILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKE-GMFNNANVLFRTRFV 244 (251)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHhCCEEEEEEee
Confidence 4688887 678888888888888765566688888883 332234666666664
No 380
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=48.47 E-value=22 Score=30.96 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=31.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+++||++=+.+++.+.++..|. ..++.+|+++...
T Consensus 303 l~VDEA~FI~~~a~~tilgfm~--q~~~KiIfISS~N 337 (668)
T PHA03372 303 LLVDEAHFIKKDAFNTILGFLA--QNTTKIIFISSTN 337 (668)
T ss_pred EEEehhhccCHHHHHHhhhhhc--ccCceEEEEeCCC
Confidence 4789999999999999999999 7788999997554
No 381
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=48.41 E-value=37 Score=24.97 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=35.5
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeEecC
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQLLP 54 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~~~~ 54 (137)
+++||.-. |++.....+...+.+...++.+|+++.. ..+..+-.|+..+.|..
T Consensus 184 lllDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~-~~~~~~~d~i~~l~~~~ 237 (243)
T cd03272 184 YLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR-PELLEVADKFYGVKFRN 237 (243)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHhhCCEEEEEEEEC
Confidence 35677654 6778888888888876555556666655 33455777777777754
No 382
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=48.11 E-value=23 Score=26.42 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=35.0
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+.+.+++......+|+++.+..-+..+-+|+.++
T Consensus 170 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 170 ILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEE
Confidence 3567764 4788888888888888765566788887766556666666544
No 383
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=48.05 E-value=13 Score=31.11 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=22.3
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+++||+|.|.... ...+..++...+....+.++++-+
T Consensus 274 lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 274 LVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVS 311 (518)
T ss_pred EEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCC
Confidence 5899999986543 445666666554333345555544
No 384
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=48.01 E-value=25 Score=26.20 Aligned_cols=50 Identities=8% Similarity=0.123 Sum_probs=34.8
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+...+.+...+..+|+++.+...+..+-.|+.++
T Consensus 171 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 171 LLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEE
Confidence 4677765 4688888888888887655566888888776555555665443
No 385
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=47.94 E-value=29 Score=23.65 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=32.1
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+...+.+. +..+++++.+..-+..+-.|+.++
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l 140 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIEL 140 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEE
Confidence 4678876 67888888888888765 345777777665445555555443
No 386
>PRK01172 ski2-like helicase; Provisional
Probab=47.70 E-value=24 Score=30.51 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=22.6
Q ss_pred CcccccCcCCHH----HHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTD----ALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~----~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+|+||+|.+... ..+.++..+.....+.++|+.+...
T Consensus 139 vViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl 179 (674)
T PRK01172 139 IVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATV 179 (674)
T ss_pred EEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCcc
Confidence 589999999633 2444444444444566777666554
No 387
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=47.41 E-value=30 Score=24.09 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=33.1
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+......+...+.+... +..+|+++.+...+..+-.|+..+
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 155 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL 155 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4678876 5788888888888876643 455777777665444444555433
No 388
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.37 E-value=28 Score=25.79 Aligned_cols=50 Identities=8% Similarity=0.206 Sum_probs=35.0
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+..++..+...+.+...+..+|+++.+..-+..+-.|+.++
T Consensus 170 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14272 170 LLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFF 220 (252)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 36677654 678888888888887655566888887776556666666444
No 389
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=47.25 E-value=13 Score=26.96 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=27.7
Q ss_pred CcccccCcCCHH---HHHHHHHHHHhccCCceEEEEeCCCCC
Q 042716 1 IILCEADKLSTD---ALLYMRWLLERYKGLNKVFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid~l~~~---~~~~L~~~le~~~~~~~~Il~~n~~~~ 39 (137)
+|+||+=..-.. ..+.+..+++.-|.++.+|+|..+++.
T Consensus 119 vVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~ 160 (178)
T PRK07414 119 VVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPE 160 (178)
T ss_pred EEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 467776443222 255678888888889999999998765
No 390
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.19 E-value=21 Score=26.18 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=34.7
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+... +..+|+++.+...+..+-+|..++
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 214 (233)
T cd03258 162 LLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVM 214 (233)
T ss_pred EEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4678876 6888888888888877643 456777777765555555665443
No 391
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.72 E-value=28 Score=25.93 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=34.7
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+.+++.+......+|+++.+...+..+-+|...+
T Consensus 169 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l 219 (251)
T PRK14249 169 ILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFL 219 (251)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEE
Confidence 4678876 6888888888888887654566888887776555444554433
No 392
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=46.72 E-value=21 Score=23.73 Aligned_cols=39 Identities=36% Similarity=0.273 Sum_probs=25.2
Q ss_pred CcccccCcCCHH-----------HHHHHHHHHHhcc-CCceEEEEeCCCCC
Q 042716 1 IILCEADKLSTD-----------ALLYMRWLLERYK-GLNKVFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid~l~~~-----------~~~~L~~~le~~~-~~~~~Il~~n~~~~ 39 (137)
++|||++.+... ..+.+..+++... .++.++++++....
T Consensus 89 lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 89 IILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred EEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 578999976322 2455666665543 47778888877654
No 393
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=46.61 E-value=23 Score=30.34 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=20.8
Q ss_pred CcccccCcCCHHH------HHHHHHHHHhccCCceEE-EEeCCCCCc
Q 042716 1 IILCEADKLSTDA------LLYMRWLLERYKGLNKVF-FCCSDVSKL 40 (137)
Q Consensus 1 iiiDEid~l~~~~------~~~L~~~le~~~~~~~~I-l~~n~~~~i 40 (137)
|+|||+|.++.-. ...|..+...++ +.+++ ++++-+...
T Consensus 143 iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p-~~~~v~lTAT~~~~~ 188 (607)
T PRK11057 143 LAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTT 188 (607)
T ss_pred EEEeCccccccccCcccHHHHHHHHHHHhCC-CCcEEEEecCCChhH
Confidence 5899999986421 233444444444 45544 444444333
No 394
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.59 E-value=21 Score=31.57 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=24.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
||+||+|.+.... ++++++.....+++-||++-.
T Consensus 379 II~DEvH~lpA~~---fr~il~~l~a~~RLGLTATP~ 412 (732)
T TIGR00603 379 ILLDEVHVVPAAM---FRRVLTIVQAHCKLGLTATLV 412 (732)
T ss_pred EEEEccccccHHH---HHHHHHhcCcCcEEEEeecCc
Confidence 5899999996543 445555556678888888754
No 395
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.57 E-value=32 Score=25.52 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=35.0
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeE
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQ 51 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~ 51 (137)
+++||.-. |+...+..+...+.+...+..+|+++.+...+..+-.|+.++.
T Consensus 168 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 168 LLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 46777654 6788888888888876555667888877765555556665443
No 396
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=46.56 E-value=27 Score=25.15 Aligned_cols=50 Identities=10% Similarity=0.057 Sum_probs=33.0
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhcc-CCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYK-GLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..+...+...+.+.. .+..+|+++.+..-+..+-.|+.++
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 205 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 3677763 478888888888887754 3456788887766555555555443
No 397
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.47 E-value=28 Score=26.67 Aligned_cols=50 Identities=12% Similarity=0.252 Sum_probs=35.3
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+.+.+.+......+|+++.+...+..+-.|..++
T Consensus 204 llLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L 254 (286)
T PRK14275 204 LLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFF 254 (286)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 4678875 6788888888888887655556788887776555555565443
No 398
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.33 E-value=24 Score=25.38 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=33.5
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+...+..+...+.+... +..+|+++.+...+..+-.|+.++
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 202 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFL 202 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEE
Confidence 46777654 688888888888887542 456777777766555555565444
No 399
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=46.05 E-value=14 Score=27.08 Aligned_cols=49 Identities=12% Similarity=0.063 Sum_probs=33.3
Q ss_pred CcccccCcCCHH---HHHHHHHHHHhccCCceEEEEeCCCCC-c---hhhhhccee
Q 042716 1 IILCEADKLSTD---ALLYMRWLLERYKGLNKVFFCCSDVSK-L---QPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid~l~~~---~~~~L~~~le~~~~~~~~Il~~n~~~~-i---~~l~SRc~~ 49 (137)
+|+||+=..... ....+..+++.-|.++.+|+|.++.+. + .++.|.+..
T Consensus 119 vVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 119 VVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred EEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 467776543222 156678888888889999999998875 3 566665443
No 400
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.03 E-value=31 Score=25.67 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=34.1
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+.+.+.+...+..+|+++.+..-+..+-.|+.++
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l 221 (251)
T PRK14244 171 LLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFF 221 (251)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEE
Confidence 4677765 3678888888888877655566888888776545555555433
No 401
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=45.78 E-value=9.2 Score=29.62 Aligned_cols=18 Identities=22% Similarity=0.312 Sum_probs=13.8
Q ss_pred CcccccCcCCHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMR 18 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~ 18 (137)
+||||+|+|...+.+.+-
T Consensus 240 lIiDEAHnL~d~a~~~~s 257 (289)
T smart00489 240 VIFDEAHNLDNVCISALS 257 (289)
T ss_pred EEEeCccChHHHHHHHhc
Confidence 589999999877666543
No 402
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=45.78 E-value=9.2 Score=29.62 Aligned_cols=18 Identities=22% Similarity=0.312 Sum_probs=13.8
Q ss_pred CcccccCcCCHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMR 18 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~ 18 (137)
+||||+|+|...+.+.+-
T Consensus 240 lIiDEAHnL~d~a~~~~s 257 (289)
T smart00488 240 VIFDEAHNLDNVCISALS 257 (289)
T ss_pred EEEeCccChHHHHHHHhc
Confidence 589999999877666543
No 403
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=45.70 E-value=26 Score=26.65 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=35.6
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+... +..+|+++.+..-+..+-.|+.++
T Consensus 159 lilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l 211 (277)
T PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVM 211 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4678876 6788888888888876543 466888888777665566676444
No 404
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=45.53 E-value=40 Score=24.13 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=33.7
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC-CceEEEEeCCCCC-chhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG-LNKVFFCCSDVSK-LQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~-i~~l~SRc~~i 50 (137)
+++||.-. |+...+..+.+.+.+... +..+|+++.+... +..+-.|+.++
T Consensus 133 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l 185 (194)
T cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL 185 (194)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEE
Confidence 46777654 788888888888887653 4557777777653 35555665444
No 405
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=45.37 E-value=25 Score=25.26 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=31.9
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhccee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~ 49 (137)
+++||.- .|+...+..+...+.+... +..+|+++.+..-+..+-+|..+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 206 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIV 206 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4677764 4788888888888877643 45677877776544444444443
No 406
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=45.12 E-value=27 Score=25.61 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=34.6
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+.+.+.+... ++.+|+++.+...++.+-.|..++
T Consensus 151 llLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 203 (232)
T PRK10771 151 LLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVV 203 (232)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 4678775 4788888888888887532 566888888777555555565433
No 407
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=45.07 E-value=27 Score=26.00 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=34.0
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+..++..+.+.+.+......+|++|.+..-+..+-.|..++
T Consensus 169 lllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 169 ILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEE
Confidence 36777654 678888888888887655555788887765446666665444
No 408
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=44.90 E-value=24 Score=31.13 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=21.1
Q ss_pred CcccccCcCCHH---H----HHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTD---A----LLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~---~----~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
++|||+|.|... . ...|+++...+..+..||+.+...+
T Consensus 161 vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~ 205 (742)
T TIGR03817 161 VVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTA 205 (742)
T ss_pred EEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCC
Confidence 589999998531 1 1223334443444556777665443
No 409
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=44.87 E-value=67 Score=25.13 Aligned_cols=48 Identities=25% Similarity=0.232 Sum_probs=38.8
Q ss_pred eeEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHH
Q 042716 49 VIQLLPPSKQEIVEVLEFIAEQEGI---QLPHQLAEKIADNSKNNLRQAIR 96 (137)
Q Consensus 49 ~i~~~~~~~~~i~~~l~~i~~~egi---~i~~~~l~~i~~~~~gd~R~aln 96 (137)
.+++++++.+|+...+....+..-+ ..++.+.+.+...++|++|.+.+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 8999999999999999887665544 34566778888889999998754
No 410
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=44.86 E-value=15 Score=26.60 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=32.4
Q ss_pred CcccccCcCCHH---HHHHHHHHHHhccCCceEEEEeCCCCC-c---hhhhhccee
Q 042716 1 IILCEADKLSTD---ALLYMRWLLERYKGLNKVFFCCSDVSK-L---QPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid~l~~~---~~~~L~~~le~~~~~~~~Il~~n~~~~-i---~~l~SRc~~ 49 (137)
+|+||+=....- ....+..+++.-|.++.+|+|..+.+. + .++.+.+..
T Consensus 101 vVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 101 VLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred EEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence 467777532111 134577888888889999999998875 2 566665543
No 411
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.67 E-value=25 Score=25.88 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=34.4
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||... |+......+...+.+... +..+|+++.+..-++.+-.|+.++
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l 204 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVM 204 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 46777764 788888888888877653 456788877776555555665443
No 412
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=44.64 E-value=32 Score=25.90 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=35.4
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeE
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQ 51 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~ 51 (137)
+++||.- .|+...+..+...+.+......+|+++.+...+..+-.|...++
T Consensus 173 llLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 173 ILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 4677764 46888888888888876655668888877665565656655553
No 413
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=44.64 E-value=21 Score=28.39 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=28.5
Q ss_pred CcccccCcC-CHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKL-STDALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l-~~~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+++||+|.| +++-....+.++...|+++.+++.+...+
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp 211 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLP 211 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCc
Confidence 479999988 45556778888888788888777765443
No 414
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=44.53 E-value=22 Score=31.30 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=27.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+|+||+..++......|++.+ +.++++||+....
T Consensus 420 lIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~~ 453 (720)
T TIGR01448 420 LIVDESSMMDTWLALSLLAAL---PDHARLLLVGDTD 453 (720)
T ss_pred EEEeccccCCHHHHHHHHHhC---CCCCEEEEECccc
Confidence 589999999998888887755 4678999998644
No 415
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=44.52 E-value=27 Score=25.28 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=33.4
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+...+..+.+.+.+... ++.+|+++.+..-+..+-.|..++
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l 202 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVV 202 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEE
Confidence 46788754 688888888888887643 466788877765444444554443
No 416
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=44.45 E-value=29 Score=25.35 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=34.1
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+...+.+... +..+|+++.+...+..+-+|+.++
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 206 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYII 206 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3677764 4788888888888876543 456888888776555566666444
No 417
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.42 E-value=34 Score=26.04 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=36.8
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeE
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQ 51 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~ 51 (137)
+++||.- .|+...+..+.+.+.+....+.+|+++.+..-+..+-+|..++.
T Consensus 183 llLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 183 LLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 4677764 57888899999988887655668888887766655556655553
No 418
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.00 E-value=32 Score=25.58 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=34.7
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+...+..+|+++.+..-+..+-.|+.++
T Consensus 170 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l 220 (252)
T PRK14255 170 ILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFF 220 (252)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEE
Confidence 3677764 4788888888888887665566788887776555555665444
No 419
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.93 E-value=35 Score=25.76 Aligned_cols=51 Identities=12% Similarity=0.076 Sum_probs=36.8
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeE
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQ 51 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~ 51 (137)
+++||.- .|+..++..+...+.+...+..+|+++.+..-+..+-.|+.++.
T Consensus 171 lllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 171 LLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 3667764 47888888888888877555567777777665577777777664
No 420
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=43.91 E-value=69 Score=27.76 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=32.8
Q ss_pred CceEEEEeCCCCCc-hhh-------hhc---ceeeEecCCCHHHHHHHHHHHHHHcCCC
Q 042716 27 LNKVFFCCSDVSKL-QPI-------KSL---CTVIQLLPPSKQEIVEVLEFIAEQEGIQ 74 (137)
Q Consensus 27 ~~~~Il~~n~~~~i-~~l-------~SR---c~~i~~~~~~~~~i~~~l~~i~~~egi~ 74 (137)
+..+.++.|+..|+ |.+ .|+ +..+-.....++++...|+.+++++|+.
T Consensus 429 ~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~ 487 (620)
T COG3914 429 DAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVD 487 (620)
T ss_pred CeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCC
Confidence 33344445777786 644 343 2344555557899999999999999985
No 421
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=43.83 E-value=46 Score=21.26 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=25.2
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Q 042716 52 LLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNN 90 (137)
Q Consensus 52 ~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd 90 (137)
+..++.+++ ...|++-|+++++..++.|+....|.
T Consensus 12 ln~iT~~eL----lkyskqy~i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 12 LNNITAKEL----LKYSKQYNISITKKQAEQIANILRGK 46 (85)
T ss_pred HhcCCHHHH----HHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 345666664 44567789999999999988876543
No 422
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.74 E-value=40 Score=24.64 Aligned_cols=49 Identities=24% Similarity=0.282 Sum_probs=34.2
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+...+.+......+|+++.+..-+.. -+|+.++
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l 209 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVL 209 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEe
Confidence 4677764 47888888898888877666668888877765533 4555444
No 423
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.49 E-value=26 Score=26.88 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=36.8
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceeeE
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVIQ 51 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i~ 51 (137)
+++||.-. |++.++..++.++.+... +..+|++|.+...+..+-+|+.++.
T Consensus 167 lllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~ 220 (290)
T PRK13634 167 LVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH 220 (290)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46777754 688888888888877643 5668888888776666677775553
No 424
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.31 E-value=35 Score=25.41 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=34.3
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+......+...+.+...+..+|+++.+..-+..+-+|..++
T Consensus 172 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l 222 (254)
T PRK14273 172 ILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFF 222 (254)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4677764 4688888888888877655566788887776555556666444
No 425
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.29 E-value=37 Score=25.18 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=33.9
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+......+.+.+.+...+..+|+++.+.+.+..+-.|..++
T Consensus 164 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l 214 (246)
T PRK14269 164 LLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFF 214 (246)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEE
Confidence 4677765 4678888888888887655666788887776555555555443
No 426
>TIGR01714 phage_rep_org_N phage replisome organizer, putative, N-terminal region. This model represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region.
Probab=43.14 E-value=18 Score=24.55 Aligned_cols=48 Identities=13% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc-cCCcHHH
Q 042716 72 GIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI-LTGWEDD 121 (137)
Q Consensus 72 gi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~-~~~~~~~ 121 (137)
.++++++.+..+.+..-+++|.|+..++...+- .+.+++++ .++|+++
T Consensus 49 ~ipy~~e~LA~~~~~~~~~V~~Al~~f~k~glI--e~~d~g~i~i~~~~~~ 97 (119)
T TIGR01714 49 LAPYNAEMLATMFNRNVGDIRITLQTLESLGLI--EKKNNGDIFLENWEKH 97 (119)
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE--EEecCCcEEehhHHHH
Confidence 467788888888888888999999998877643 23455666 5778765
No 427
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=43.08 E-value=36 Score=24.39 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=31.5
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhcc-CCceEEEEeCCCCCchhhhhccee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYK-GLNKVFFCCSDVSKLQPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~i~~l~SRc~~ 49 (137)
+++||.- .|+...+..+...+.+.. .+..+|+++.+...+..+-.|..+
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 198 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLL 198 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4677764 467888888888887763 345577777766544444444433
No 428
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=42.97 E-value=34 Score=24.94 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=31.9
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcce
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCT 48 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~ 48 (137)
+++||.-. |+...+..+...+.+......+|+++.+...+..+-.|+.
T Consensus 163 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~ 211 (227)
T cd03260 163 LLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTA 211 (227)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEE
Confidence 46777655 6788888888888776545557777777654444445543
No 429
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=42.96 E-value=28 Score=25.08 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=32.3
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhccee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~ 49 (137)
+++||.- .|+..++..+.+.+.+... +..+|+++.+..-+..+-.|+.+
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~ 209 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVII 209 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 4678875 4688888888888887543 45677777766544444455443
No 430
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=42.92 E-value=78 Score=21.59 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=47.0
Q ss_pred hhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCc
Q 042716 42 PIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQ 112 (137)
Q Consensus 42 ~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~ 112 (137)
.++.-+..|-=+.++.+.+...+.. ..|++++.....++.+...+| +.+++.++... .+..+++++
T Consensus 38 Kl~~Il~mFl~~eid~e~~y~l~~~---~d~~~LT~~Qi~Yl~~~~~~n-~~I~~Il~~~v-d~~~l~ddd 103 (122)
T PF06648_consen 38 KLIKILKMFLNDEIDVEDMYNLFGA---VDGLKLTRSQIDYLYNRVYNN-RYIINILQKFV-DGQHLTDDD 103 (122)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHhc---ccHhhcCHHHHHHHHHHHHcc-HHHHHHHHHHh-cCccCCccc
Confidence 3333334444467888888887754 357899999999999998887 78888998877 455555443
No 431
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=42.81 E-value=28 Score=25.59 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=34.4
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+......+...+.+... +..+|+++.+...+..+-.|+.++
T Consensus 147 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 199 (230)
T TIGR02770 147 LIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVM 199 (230)
T ss_pred EEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4678876 5788888888888876543 456788877766555666665444
No 432
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=42.75 E-value=26 Score=26.49 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=35.2
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+...+++... +..+|+++.+...+..+-.|...+
T Consensus 173 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l 225 (268)
T PRK10419 173 LILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225 (268)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE
Confidence 4678875 6788888888888877643 566888888776555555665444
No 433
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=42.69 E-value=31 Score=25.32 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=32.2
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCC-ceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGL-NKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~-~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+.... ..+|+++.+...+..+-.|..++
T Consensus 164 lllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 215 (224)
T cd03220 164 LLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL 215 (224)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4677776 56788888888887765433 55777777765555555555443
No 434
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=42.67 E-value=35 Score=25.60 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=34.2
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+......+|+++.+...+..+-.|+.++
T Consensus 178 llLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 178 LLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 4677765 4788888888888887655556778777765555555665443
No 435
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=42.46 E-value=16 Score=31.52 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=24.9
Q ss_pred CcccccCcCCHHH----HHHHHHHHHhcc---CCceEEEEeCCCCCc
Q 042716 1 IILCEADKLSTDA----LLYMRWLLERYK---GLNKVFFCCSDVSKL 40 (137)
Q Consensus 1 iiiDEid~l~~~~----~~~L~~~le~~~---~~~~~Il~~n~~~~i 40 (137)
+++||+|+|.... ...|++.+.+-+ ++..|||.++-.-.+
T Consensus 344 LVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~ 390 (731)
T KOG0347|consen 344 LVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVL 390 (731)
T ss_pred EEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhh
Confidence 4799999996654 344555554322 334599988755433
No 436
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=42.29 E-value=37 Score=25.16 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=33.9
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+..++..+.+.+.+......+|+++.+...+..+-.|..++
T Consensus 168 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 168 LLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEE
Confidence 46777654 678888888888887655556788877766555555665443
No 437
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=42.23 E-value=33 Score=25.25 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=34.3
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+..++..+.+++.+... +..+|+++.+..-+..+-+|..++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46788754 688888888888877643 456888888776555555665443
No 438
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=42.04 E-value=37 Score=24.84 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=33.2
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhcc-CCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYK-GLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+.. .+..+|+++.+...+..+-.|..++
T Consensus 165 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l 216 (236)
T cd03219 165 LLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVL 216 (236)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4677765 467888888888887754 4456788887776555555555443
No 439
>PRK13766 Hef nuclease; Provisional
Probab=42.02 E-value=61 Score=28.45 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=10.5
Q ss_pred CcccccCcCCHHH
Q 042716 1 IILCEADKLSTDA 13 (137)
Q Consensus 1 iiiDEid~l~~~~ 13 (137)
||+||+|.+....
T Consensus 135 iVvDEaH~~~~~~ 147 (773)
T PRK13766 135 LIFDEAHRAVGNY 147 (773)
T ss_pred EEEECCccccccc
Confidence 5899999997654
No 440
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=42.01 E-value=38 Score=25.59 Aligned_cols=50 Identities=6% Similarity=0.092 Sum_probs=33.7
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+..++.+......+|+++.+...+..+-.|..++
T Consensus 185 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l 235 (267)
T PRK14237 185 LLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFF 235 (267)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEE
Confidence 3677765 4678888888888887655566888887766555555565433
No 441
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=41.86 E-value=37 Score=25.15 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=33.7
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+......+...+.+...+..+|+++.+...+..+-.|..++
T Consensus 170 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 170 ILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred EEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEE
Confidence 46777654 678888888888887655556888888776555555565433
No 442
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.76 E-value=35 Score=25.53 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=34.1
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+.+.+.+...+..+|+++.+..-+..+-.|..++
T Consensus 176 lllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l 226 (258)
T PRK14268 176 ILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFF 226 (258)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEE
Confidence 3677764 4788888888888887655566788887766554455555443
No 443
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=41.74 E-value=36 Score=25.06 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=33.9
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+...+.+... +..+|+++.+...+..+-+|+.++
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 4678876 5788888888888887632 456888887776555555554433
No 444
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=41.57 E-value=15 Score=29.78 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=20.5
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCce-EEEEeCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNK-VFFCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~-~Il~~n~ 36 (137)
||+||+|.|.... ...+..+..+.+.... ++|+++-
T Consensus 151 lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 188 (434)
T PRK11192 151 LILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATL 188 (434)
T ss_pred EEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeec
Confidence 5899999986443 3445555554444444 4444443
No 445
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=41.44 E-value=32 Score=24.99 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=32.9
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+... +..+|+++.+...+..+-+|..++
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 219 (228)
T cd03257 167 LIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM 219 (228)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 4677764 4678888888888877643 456778777765445555555443
No 446
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=41.39 E-value=32 Score=25.79 Aligned_cols=50 Identities=12% Similarity=-0.047 Sum_probs=35.4
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+...+..+...+.+... +..+|+++.+...+..+-.|+.++
T Consensus 174 lllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l 226 (262)
T PRK09984 174 ILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL 226 (262)
T ss_pred EEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46777654 788888899888887642 467888888877655555665443
No 447
>PHA02653 RNA helicase NPH-II; Provisional
Probab=41.32 E-value=18 Score=31.70 Aligned_cols=37 Identities=5% Similarity=-0.042 Sum_probs=21.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCC--ceEEEEeCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGL--NKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~--~~~Il~~n~~~ 38 (137)
|||||+|.++... ..++.++.+.... ..++++|+-+.
T Consensus 295 VVIDEaHEr~~~~-DllL~llk~~~~~~rq~ILmSATl~~ 333 (675)
T PHA02653 295 VIIDEVHEHDQIG-DIIIAVARKHIDKIRSLFLMTATLED 333 (675)
T ss_pred EEccccccCccch-hHHHHHHHHhhhhcCEEEEEccCCcH
Confidence 5899999997655 3445555432222 23666666543
No 448
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.30 E-value=35 Score=25.64 Aligned_cols=50 Identities=10% Similarity=0.170 Sum_probs=34.0
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..+...+...+.+......+|+++.+.+-+..+-.|+.++
T Consensus 183 lllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l 233 (265)
T PRK14252 183 LLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYM 233 (265)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4677765 4677888888888887665566788877776555555665444
No 449
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.22 E-value=44 Score=25.46 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=29.3
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+++||... |+...+..+...+.+...+..+|+++.++.
T Consensus 196 lllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~ 234 (276)
T cd03241 196 LIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQ 234 (276)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHH
Confidence 46788774 788888888888887666667888888764
No 450
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=41.12 E-value=36 Score=24.61 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=32.5
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhccee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~ 49 (137)
+++||.- .|+......+...+.+... +..+|+++.+...+..+-.|...
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~ 208 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVV 208 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEE
Confidence 3677765 4678888888888887643 45688888776544544455443
No 451
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.09 E-value=41 Score=25.46 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=34.3
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeE
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQ 51 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~ 51 (137)
+++||.- .|+...+..+...+.+......+|+++.+...+..+-.|..++.
T Consensus 176 llLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 176 ILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 4677764 47888888888888877555567777777654455555544443
No 452
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=40.99 E-value=1e+02 Score=20.28 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHH
Q 042716 54 PPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADN-SKNNLRQAIRSFEA 100 (137)
Q Consensus 54 ~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~-~~gd~R~aln~L~~ 100 (137)
.|+.+++.++|. .-|++++++-+..+++. .+.|+..++.....
T Consensus 16 ~~ta~~I~~IL~----aaGveVe~~~~~~~~~aLaGk~V~eli~~g~~ 59 (105)
T cd04411 16 ELTEDKIKELLS----AAGAEIEPERVKLFLSALNGKNIDEVISKGKE 59 (105)
T ss_pred CCCHHHHHHHHH----HcCCCcCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 377788666664 57999999999999988 88899998876643
No 453
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=40.89 E-value=1.5e+02 Score=26.77 Aligned_cols=100 Identities=11% Similarity=0.142 Sum_probs=57.4
Q ss_pred CcccccCcCCHH-----------HHHHHHHHHHhccC-CceEEEEeCCCCC-c-hhhhh--cc-eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLSTD-----------ALLYMRWLLERYKG-LNKVFFCCSDVSK-L-QPIKS--LC-TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~-----------~~~~L~~~le~~~~-~~~~Il~~n~~~~-i-~~l~S--Rc-~~i~~~~~~~~~i~~~ 63 (137)
+|+||.|.+.+. ..|.|+.-|+-..+ .+.+|++|+..+. | |+|.- |. ..+.-+.|+..+..++
T Consensus 764 LFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~i 843 (952)
T KOG0735|consen 764 LFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEI 843 (952)
T ss_pred EEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHH
Confidence 478999998443 36777776653222 2346666666555 5 66653 22 2445556777778888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH----cCCcHHHHHHHHHHH
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADN----SKNNLRQAIRSFEAS 101 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~----~~gd~R~aln~L~~~ 101 (137)
++..+..--++ ++-.++.++.. ++.|+..++-.-+..
T Consensus 844 l~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~l~ 884 (952)
T KOG0735|consen 844 LQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQLA 884 (952)
T ss_pred HHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHHHH
Confidence 87766543322 22235556654 344666665554443
No 454
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=40.89 E-value=34 Score=25.24 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=33.5
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhccee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~ 49 (137)
+++||.- .|+..++..+...+.+... +..+|+++.+...+..+-.|..+
T Consensus 163 lilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~ 213 (242)
T PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVY 213 (242)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 4678875 4788888888888887653 45577777776654555555543
No 455
>PRK00254 ski2-like helicase; Provisional
Probab=40.82 E-value=29 Score=30.36 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=23.1
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+|+||+|.+.... -..+..++.....+.++|+.+...
T Consensus 142 vViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl 179 (720)
T PRK00254 142 VVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATV 179 (720)
T ss_pred EEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccC
Confidence 5899999996432 233444555545566777766554
No 456
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=40.75 E-value=34 Score=26.03 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=34.8
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+... +..+|+++.+...++.+-.|+..+
T Consensus 165 LlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l 216 (264)
T PRK13546 165 LVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWI 216 (264)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEE
Confidence 4788887 6888888888888877543 456777777766555555665444
No 457
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=40.62 E-value=33 Score=25.35 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=33.5
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+..++..+.+.+.+... ...+|++|.+...+..+-.|+..+
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l 204 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVM 204 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEE
Confidence 35677654 688888888888887644 456777777665545555665444
No 458
>COG3899 Predicted ATPase [General function prediction only]
Probab=40.48 E-value=1.6e+02 Score=26.69 Aligned_cols=103 Identities=22% Similarity=0.198 Sum_probs=73.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccC----CceEEEEeCCCCCc-hhhhhc--ceeeEecCCCHHHHHHHHHHHHHHcCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKG----LNKVFFCCSDVSKL-QPIKSL--CTVIQLLPPSKQEIVEVLEFIAEQEGI 73 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~----~~~~Il~~n~~~~i-~~l~SR--c~~i~~~~~~~~~i~~~l~~i~~~egi 73 (137)
+|+|++|-....+-..|..+|..-+. ...+..+.+....+ ...+++ ...+.+.|++..+....+...... +.
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~-~~ 236 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC-TK 236 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC-cc
Confidence 58999999999999999999985440 00122222222233 333443 367999999999988888765433 24
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHHHhc
Q 042716 74 QLPHQLAEKIADNSKNNLRQAIRSFEASRQM 104 (137)
Q Consensus 74 ~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~ 104 (137)
..+.+..+.+.+.+.|++=-+-..++.+...
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 5677789999999999999888888888753
No 459
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=40.46 E-value=9.4 Score=26.05 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=16.2
Q ss_pred CcccccCcCCHH-HHHHHHHHHHhc
Q 042716 1 IILCEADKLSTD-ALLYMRWLLERY 24 (137)
Q Consensus 1 iiiDEid~l~~~-~~~~L~~~le~~ 24 (137)
|++||+|.+... ....+..+++..
T Consensus 123 iViDE~h~l~~~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 123 IVIDEAHHLSDETFRAMLKSILRRL 147 (169)
T ss_dssp EEEETHHHHHHTTHHHHHHHHHHHS
T ss_pred eccCcccccccccHHHHHHHHHHHh
Confidence 589999999884 344455555553
No 460
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=40.25 E-value=25 Score=30.27 Aligned_cols=36 Identities=8% Similarity=0.028 Sum_probs=20.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~ 36 (137)
+||||+|.+.......|+...........++++++.
T Consensus 361 vVIDEaH~fg~~qr~~l~~~~~~~~~~~~l~~SATp 396 (630)
T TIGR00643 361 VIIDEQHRFGVEQRKKLREKGQGGFTPHVLVMSATP 396 (630)
T ss_pred EEEechhhccHHHHHHHHHhcccCCCCCEEEEeCCC
Confidence 589999999876666665443211012235555553
No 461
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=40.23 E-value=40 Score=25.05 Aligned_cols=50 Identities=10% Similarity=0.184 Sum_probs=33.8
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+.+.+.+...+..+|+++.+...+..+-.|..++
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 171 LLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEE
Confidence 3677764 4778888888888877654556777777766555555665544
No 462
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.12 E-value=36 Score=23.78 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=32.2
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCC-ceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGL-NKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~-~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+...+..+...+++.... ..+|+++.+..-+..+-+|...+
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l 168 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAIL 168 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 36777654 6788888888888876433 55777776655445555555443
No 463
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=40.05 E-value=1.7e+02 Score=22.46 Aligned_cols=94 Identities=23% Similarity=0.158 Sum_probs=59.8
Q ss_pred ccCcCCHHHHHHHHH-HHHhccCCceEEEEeCCCCC-----c-hhhhhc-c--e---eeEecCCCHHHHHHHHHHHHHH-
Q 042716 5 EADKLSTDALLYMRW-LLERYKGLNKVFFCCSDVSK-----L-QPIKSL-C--T---VIQLLPPSKQEIVEVLEFIAEQ- 70 (137)
Q Consensus 5 Eid~l~~~~~~~L~~-~le~~~~~~~~Il~~n~~~~-----i-~~l~SR-c--~---~i~~~~~~~~~i~~~l~~i~~~- 70 (137)
|...|+.+-+..+.+ +.+...++.++|.......- + +...+- + . .=.+.+++++++.++.+.+++.
T Consensus 50 E~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~ 129 (293)
T PRK04147 50 EAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSA 129 (293)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhC
Confidence 567788877766655 55555555666665543321 1 121111 1 1 1113456889999999999875
Q ss_pred ------------cCCCCCHHHHHHHHHH--------cCCcHHHHHHHH
Q 042716 71 ------------EGIQLPHQLAEKIADN--------SKNNLRQAIRSF 98 (137)
Q Consensus 71 ------------egi~i~~~~l~~i~~~--------~~gd~R~aln~L 98 (137)
-|..++++.+..++++ +.||+.....+.
T Consensus 130 ~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~~d~~~~~~~~ 177 (293)
T PRK04147 130 DNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTAGDLYQLERIR 177 (293)
T ss_pred CCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHH
Confidence 4778999999999864 678987765554
No 464
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.04 E-value=40 Score=25.70 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=34.9
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+.+.+.+......+|+++.+...+..+-.|..++
T Consensus 185 llLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 185 LLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4677764 4678888888888887655566888887776555555665444
No 465
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=39.95 E-value=12 Score=27.00 Aligned_cols=49 Identities=16% Similarity=0.031 Sum_probs=27.7
Q ss_pred CcccccCcCCHH---HHHHHHHHHHhccCCceEEEEeCCCCC-c---hhhhhccee
Q 042716 1 IILCEADKLSTD---ALLYMRWLLERYKGLNKVFFCCSDVSK-L---QPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid~l~~~---~~~~L~~~le~~~~~~~~Il~~n~~~~-i---~~l~SRc~~ 49 (137)
||+||+=..-.. ....+..++++-+..+.+|||.++.+. + .++.+.+..
T Consensus 100 vILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADlVTem~~ 155 (172)
T PF02572_consen 100 VILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADLVTEMRE 155 (172)
T ss_dssp EEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SEEEEEEE
T ss_pred EEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCeeeeece
Confidence 467776433221 256677888887889999999999875 3 466665543
No 466
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=39.71 E-value=40 Score=25.50 Aligned_cols=50 Identities=12% Similarity=0.215 Sum_probs=34.0
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+..++..+.+.+.+......+|+++.+...+..+-.|+.++
T Consensus 190 llLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 190 LLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEE
Confidence 46777654 678888888888887655556788887776555555565444
No 467
>PRK10869 recombination and repair protein; Provisional
Probab=39.55 E-value=43 Score=28.55 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=28.6
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+++||++. ++......+.+.+.+...+..+|++|..+
T Consensus 456 li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~ 493 (553)
T PRK10869 456 LIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLP 493 (553)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 47899997 57777888888888776666688888766
No 468
>PF12696 TraG-D_C: TraM recognition site of TraD and TraG
Probab=39.48 E-value=64 Score=21.40 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=42.3
Q ss_pred CcccccCcCCH-HHHHHHHHHHHhccCCceEEEEeCCCCC--------c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLST-DALLYMRWLLERYKGLNKVFFCCSDVSK--------L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~-~~~~~L~~~le~~~~~~~~Il~~n~~~~--------i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
+++||+-.+.+ .....++...- ..+..++++.-+... . .+|..-|...-|-+.++.+-.+++...+-
T Consensus 4 ~~lDE~~~~~~~~~l~~~~~~~r--~~gi~~~~~~Qs~~ql~~~yG~~~~~~i~~n~~~~~~~~~~d~~t~e~~s~~~G 80 (128)
T PF12696_consen 4 FILDEFGNLGPIPGLEDLLATGR--SYGISFILAFQSLAQLEAKYGKEGAESILGNCNNKIFFGSNDPETAEYISKLLG 80 (128)
T ss_pred EEEEChhhcCCcHhHHHHHHHHh--cCCCEEEEEEccHHHHHHHHCHHHHHHHHHhcCceEeccCCCHHHHHHHHHHhC
Confidence 57999999965 34555555554 556778888765532 3 56777775544545666667777665543
No 469
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=39.47 E-value=26 Score=30.55 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=36.2
Q ss_pred cccccCcCCHHHHHHHHHHHHhc----cCCceEEEEeCCCCCc-hhhhhcceeeEecCCCH
Q 042716 2 ILCEADKLSTDALLYMRWLLERY----KGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSK 57 (137)
Q Consensus 2 iiDEid~l~~~~~~~L~~~le~~----~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~ 57 (137)
+|.++|... .-...|-+.++.. +.+.|+.|+|...+.+ ..|..+|..+.+.+|+.
T Consensus 175 ~L~N~HL~~-~wl~~Le~~l~~~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~E~p~g 234 (707)
T PF03028_consen 175 LLQNCHLAP-SWLPQLEKKLESLSPEIHPNFRLFLTSEPSPSFPISLLQSSIKVTYEPPPG 234 (707)
T ss_dssp EEETGGGGC-CCHHCHHHHHHC-SSTTSTT-EEEEEEESSTTS-HHHHHCSEEEEE---SS
T ss_pred EcccchhHH-HHHHHHHHHHhccccccccceEEEEEecCcccCCHHHHHcccceeeCChhH
Confidence 455566553 2233555566554 4588999999888899 99999999999988874
No 470
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=39.43 E-value=36 Score=24.84 Aligned_cols=50 Identities=8% Similarity=0.137 Sum_probs=34.1
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+.+++.+... +..+|+++.+..-+..+-+|+.++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 205 (230)
T TIGR03410 153 LLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVM 205 (230)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEE
Confidence 4677764 4788888888888887643 456788887776555555665444
No 471
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=39.27 E-value=55 Score=16.60 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHH
Q 042716 74 QLPHQLAEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 74 ~i~~~~l~~i~~~~~gd~R~aln~L 98 (137)
-++.+........++||+-.|++.|
T Consensus 12 Gf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 12 GFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3567778888888999999888765
No 472
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.20 E-value=45 Score=24.68 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=32.9
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcce
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCT 48 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~ 48 (137)
+++||.- .|+..++..++..+.+...++.+|+++.+..-+..+-+|..
T Consensus 168 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~ 216 (250)
T PRK14266 168 ILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTS 216 (250)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEE
Confidence 3567765 46788888888888876656668888877765544444443
No 473
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=39.10 E-value=45 Score=23.94 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=31.7
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhcc-CCceEEEEeCCCCCchhhhhccee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYK-GLNKVFFCCSDVSKLQPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~i~~l~SRc~~ 49 (137)
+++||.- .|+...+..+...+.+.. .+..+|+++.+...+..+-.|...
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~ 208 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIA 208 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4677775 578888888888888764 345577777766544444444433
No 474
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=39.02 E-value=36 Score=27.22 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=26.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+++||+..++.+....|...+-.+.+..++++++|...
T Consensus 105 ~~idEa~~~~~~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 105 IWFEEASQLTFEDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred ehhhhhhhcCHHHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 47899999999888888777643222224777777653
No 475
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=39.00 E-value=39 Score=24.59 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=32.3
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhcce
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCT 48 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~ 48 (137)
+++||.- .|+..++..+...+.+... +..+|+++.+..-+..+-.|+.
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~ 195 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIG 195 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEE
Confidence 3677764 4788888888888877643 4557888877654455555553
No 476
>PRK02362 ski2-like helicase; Provisional
Probab=38.74 E-value=45 Score=29.28 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=21.7
Q ss_pred CcccccCcCCHHH----HHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDA----LLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~----~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+|+||+|.+.... .+.+..-+.....+.++|+.+...
T Consensus 141 vViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl 181 (737)
T PRK02362 141 VVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATI 181 (737)
T ss_pred EEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccC
Confidence 5899999996422 233333343334566777766554
No 477
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=38.63 E-value=41 Score=25.06 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=34.8
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhcc-CCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYK-GLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+...+.+.. .+..+|+++.+...+..+-.|+.++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l 211 (255)
T PRK11231 160 VLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL 211 (255)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence 3677764 478888888888887654 3556888888777556666666544
No 478
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=38.25 E-value=62 Score=24.96 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=36.6
Q ss_pred Ccccc-cCcCCHHHHHHHHHHHHhccC---CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCE-ADKLSTDALLYMRWLLERYKG---LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDE-id~l~~~~~~~L~~~le~~~~---~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+|+|| +..|...+.+.|+..+++-.. ...++++|-+...+++--+++..+
T Consensus 193 LiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll 246 (257)
T COG1119 193 LILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246 (257)
T ss_pred EEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEe
Confidence 46777 477888888888888877543 455999999998886666666543
No 479
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=38.24 E-value=79 Score=23.86 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=28.2
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042716 53 LPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADN 86 (137)
Q Consensus 53 ~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~ 86 (137)
.+-+++++..++.+++.+.|+.++++..+.|+..
T Consensus 170 ~~~t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l 203 (225)
T PF06207_consen 170 KPKTDEEIRNIVNNVLNNYNINLSDEQIQQIVNL 203 (225)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3448999999999999999999998887776644
No 480
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=38.14 E-value=60 Score=22.72 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=32.3
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhccee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~ 49 (137)
+++||.- .|+...+..+...+.+...+..+|+++.+..-++ .-+|+..
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~ 168 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILF 168 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEE
Confidence 4678875 5788888888888887655566788887765443 2344433
No 481
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.03 E-value=42 Score=25.29 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=33.7
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..+...+...+.+......+|+++.+...+..+-+|..++
T Consensus 186 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 186 LLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred EEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEE
Confidence 4677764 4788888888888877654556788887766555555665444
No 482
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=37.94 E-value=40 Score=24.18 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=31.9
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+.+.+.+... +..+|+++.+...+..+-.|+..+
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l 199 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGII 199 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 3677765 4678888888888877543 445777776665445555555443
No 483
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=37.89 E-value=37 Score=24.42 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=30.6
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcce
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCT 48 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~ 48 (137)
+++||.-. |+..++..+...+.+... +..+|+++.+..-+..+-.|+.
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~ 202 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIA 202 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE
Confidence 35677644 678888888888876532 4568888877654444444443
No 484
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=37.86 E-value=28 Score=26.13 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=22.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL 40 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i 40 (137)
|+|||++-+++.....|..+... ...+++++...+.|
T Consensus 260 i~IDE~QD~s~~Q~~il~~l~~~---~~~~~~vGD~~QsI 296 (315)
T PF00580_consen 260 ILIDEFQDTSPLQLRILKKLFKN---PENLFIVGDPNQSI 296 (315)
T ss_dssp EEESSGGG-BHHHHHHHHHHHTT---TTTEEEEE-GGG--
T ss_pred EEeEccccCCHHHHHHHHHHHHh---hceeEEeCCCCcce
Confidence 58999999998777766666652 22366666655443
No 485
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.64 E-value=50 Score=23.71 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=32.7
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+...+..+.+.+.+... +..+|+++.+...+..+-.|+.++
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l 201 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLL 201 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEE
Confidence 4678876 5788888888888887543 455777776655444444554443
No 486
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=37.52 E-value=69 Score=17.17 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHcCCcHHHHHHHH
Q 042716 76 PHQLAEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 76 ~~~~l~~i~~~~~gd~R~aln~L 98 (137)
+++....+++.+++|+-.|++..
T Consensus 14 ~~~~A~~~L~~~~wdle~Av~~y 36 (43)
T PF14555_consen 14 DEDVAIQYLEANNWDLEAAVNAY 36 (43)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 78889999999999999999875
No 487
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.43 E-value=38 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=26.2
Q ss_pred CcccccCcCCH-HHHHHHHHHHHhccCCce--EEEEeCCCCC
Q 042716 1 IILCEADKLST-DALLYMRWLLERYKGLNK--VFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid~l~~-~~~~~L~~~le~~~~~~~--~Il~~n~~~~ 39 (137)
+++||||+|-. +....+++++++.+...+ +.++++-+..
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~ 284 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKE 284 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHH
Confidence 47999999944 457789999998744443 4444554443
No 488
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=37.35 E-value=43 Score=24.76 Aligned_cols=51 Identities=8% Similarity=0.105 Sum_probs=33.8
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhcceeeE
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTVIQ 51 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~i~ 51 (137)
+++||.-. |+..+...+.+.+.+... +..+|+++.+...+..+-.|..++.
T Consensus 166 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~ 218 (250)
T PRK11264 166 ILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD 218 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 46777754 677788888888876543 4567777777665555666665443
No 489
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=37.31 E-value=27 Score=29.78 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=20.0
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccC--CceEE-EEeCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKG--LNKVF-FCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~--~~~~I-l~~n~ 36 (137)
+||||+|.|.... ...+..++...+. ...++ ++++-
T Consensus 163 lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl 202 (572)
T PRK04537 163 CVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATL 202 (572)
T ss_pred eEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCc
Confidence 5899999885432 3444555554443 33444 44443
No 490
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=37.29 E-value=90 Score=28.27 Aligned_cols=81 Identities=9% Similarity=0.139 Sum_probs=46.8
Q ss_pred CcccccCcCCHHH--HHHHHHHHHhcc-CCceEEEEeCCCCCc----hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCC
Q 042716 1 IILCEADKLSTDA--LLYMRWLLERYK-GLNKVFFCCSDVSKL----QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGI 73 (137)
Q Consensus 1 iiiDEid~l~~~~--~~~L~~~le~~~-~~~~~Il~~n~~~~i----~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi 73 (137)
++|||+|.+..+. ...+.+.+.... -++-++++|-++..+ .++.+-|...-|-+-+.+++... ++. .
T Consensus 737 ~viDEaw~l~~~~~~a~fi~~~~k~~RK~g~~~~~aTQsi~D~~~sa~~il~ns~~~i~L~q~~~~~~~~----~~~--~ 810 (893)
T TIGR03744 737 MVTDEGHIITTNPLLAPYVVKITKMWRKLGAWFWLATQNLADFPDSAEKMLNMIEWWLCLNMPPDEVEQI----ARF--R 810 (893)
T ss_pred EEeehHhhhhcCHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHhhhHHHHHHHhchhhhhhcCCHHHHHHH----HHh--c
Confidence 4799999985332 444544444433 356688888666543 56777775443434455554333 222 3
Q ss_pred CCCHHHHHHHHHHc
Q 042716 74 QLPHQLAEKIADNS 87 (137)
Q Consensus 74 ~i~~~~l~~i~~~~ 87 (137)
.+++.....|.+..
T Consensus 811 ~Ls~~q~~~i~s~~ 824 (893)
T TIGR03744 811 ELTEEQKAMLLSAR 824 (893)
T ss_pred CCCHHHHHHHHhcc
Confidence 46777777775543
No 491
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=37.21 E-value=80 Score=22.80 Aligned_cols=54 Identities=22% Similarity=0.162 Sum_probs=33.1
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhcc----CCceEEEEeCCCCCchhhhhcceeeEecCC
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYK----GLNKVFFCCSDVSKLQPIKSLCTVIQLLPP 55 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~----~~~~~Il~~n~~~~i~~l~SRc~~i~~~~~ 55 (137)
+++||... ++......+...+.+.. ..+.+++++.+...+..+ .|-.+++...|
T Consensus 135 lllDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~~ 193 (198)
T cd03276 135 RCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKDP 193 (198)
T ss_pred EEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecCC
Confidence 46788765 56666766777666542 123467777777666444 67666666544
No 492
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.15 E-value=40 Score=24.86 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=33.5
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+..++..+...+.+... ...+++++.+...++.+-+|+.++
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l 203 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIM 203 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 35677654 678888888888876533 566888888776555555665443
No 493
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=37.11 E-value=45 Score=30.16 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=35.9
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeEec
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQLL 53 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~~~ 53 (137)
+++||++. |+......+..++.....+..||+++.++.-+ .+-.|+..+...
T Consensus 1115 ~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~~~~~~~~ 1167 (1179)
T TIGR02168 1115 CILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQLYGVTMQ 1167 (1179)
T ss_pred EEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhhHeeeeec
Confidence 57899984 78888888888887766566688888876533 235555545443
No 494
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=37.08 E-value=85 Score=23.88 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=25.7
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCc-hhhhhcce
Q 042716 16 YMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCT 48 (137)
Q Consensus 16 ~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~ 48 (137)
-+-++.|+.+....+|+++|+.+.+ +++..-+.
T Consensus 10 ~~~~~~e~ip~~~~vIl~sNH~S~~Dp~ii~~~~ 43 (235)
T cd07985 10 RFDRIEEQLAQGHNVVLLANHQTEADPAVISLLL 43 (235)
T ss_pred HHHHHHHhccCCCCEEEEECCcccccHHHHHHHh
Confidence 4566777778788999999999988 77666553
No 495
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=36.95 E-value=16 Score=31.05 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=20.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK 25 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~ 25 (137)
++|||+|+|...+.+.++..++..-
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~ 323 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLC 323 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999888877776543
No 496
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=36.91 E-value=57 Score=23.40 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=29.8
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhcc-CCceEEEEeCCCCCc
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYK-GLNKVFFCCSDVSKL 40 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~i 40 (137)
+++||.- .|+......+.+++.+.. .+..+|+++.+..-+
T Consensus 151 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 192 (204)
T PRK13538 151 WILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV 192 (204)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhh
Confidence 4678876 688889999988888753 345688888877655
No 497
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.56 E-value=40 Score=23.68 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=31.1
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcce
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCT 48 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~ 48 (137)
+++||.- .|+...+..+...+.+... +..+|+++.+..-+..+-.|..
T Consensus 122 lilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 172 (178)
T cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVV 172 (178)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 3677764 4788888888888877654 3567777776654444444443
No 498
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=36.54 E-value=48 Score=24.71 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=34.9
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+..+...+...+.+... +..+|+++.+...+..+-.|..++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVL 210 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46777654 678888888888887643 456888888877666666665444
No 499
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=36.50 E-value=42 Score=24.65 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=34.4
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..++..+.+.+.+... +..+|+++.+...+..+-.|..++
T Consensus 136 llLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 188 (230)
T TIGR01184 136 LLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML 188 (230)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 4678876 5788888888888876532 456888887776545555555444
No 500
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=36.47 E-value=42 Score=24.95 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=34.5
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.- .|+..+...++..+.+... +..+|+++.+...+..+-.|+.++
T Consensus 170 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l 222 (253)
T TIGR02323 170 VFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVM 222 (253)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 4678875 6788888888888877532 566888887766555555565443
Done!