Query 042716
Match_columns 137
No_of_seqs 137 out of 1180
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:16:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_E Activator 1 40 kDa subu 99.9 1.1E-23 3.9E-28 163.2 12.2 135 1-135 138-276 (354)
2 1sxj_C Activator 1 40 kDa subu 99.9 2.2E-21 7.5E-26 150.6 11.8 132 1-132 114-254 (340)
3 3u61_B DNA polymerase accessor 99.8 1.8E-20 6.1E-25 144.1 10.5 130 1-131 109-249 (324)
4 2chq_A Replication factor C sm 99.8 2E-20 6.7E-25 142.3 10.4 133 1-133 106-242 (319)
5 1iqp_A RFCS; clamp loader, ext 99.8 5E-20 1.7E-24 140.5 12.4 133 1-133 114-250 (327)
6 1a5t_A Delta prime, HOLB; zinc 99.8 5.4E-20 1.9E-24 142.9 8.3 97 1-102 112-209 (334)
7 1jr3_D DNA polymerase III, del 99.8 5.1E-20 1.7E-24 142.9 6.5 133 1-133 80-225 (343)
8 1sxj_B Activator 1 37 kDa subu 99.8 3.1E-19 1.1E-23 135.9 10.7 113 1-113 111-224 (323)
9 1jr3_A DNA polymerase III subu 99.8 3.2E-18 1.1E-22 132.9 13.4 133 1-133 123-260 (373)
10 1sxj_D Activator 1 41 kDa subu 99.8 1.5E-18 5.1E-23 133.9 11.2 103 1-103 137-240 (353)
11 2gno_A DNA polymerase III, gam 99.8 4.6E-19 1.6E-23 136.8 7.1 122 1-134 86-222 (305)
12 2c9o_A RUVB-like 1; hexameric 99.8 1.6E-18 5.4E-23 139.8 9.7 101 1-102 299-414 (456)
13 2chg_A Replication factor C sm 99.7 5E-17 1.7E-21 116.5 11.5 108 1-108 106-214 (226)
14 1njg_A DNA polymerase III subu 99.7 5.7E-16 1.9E-20 111.9 12.2 105 1-105 130-235 (250)
15 1sxj_A Activator 1 95 kDa subu 99.7 2E-16 6.7E-21 129.3 9.2 131 1-133 152-293 (516)
16 3uk6_A RUVB-like 2; hexameric 99.6 4.7E-15 1.6E-19 115.2 9.5 102 1-103 193-308 (368)
17 3pvs_A Replication-associated 99.6 4.8E-15 1.6E-19 119.6 8.3 103 1-105 110-222 (447)
18 1hqc_A RUVB; extended AAA-ATPa 99.5 3.5E-13 1.2E-17 102.8 12.8 103 1-103 94-216 (324)
19 3pfi_A Holliday junction ATP-d 99.5 2.7E-13 9.1E-18 104.4 11.2 102 1-102 110-231 (338)
20 3bos_A Putative DNA replicatio 99.5 2.5E-13 8.5E-18 98.7 9.4 103 1-103 108-222 (242)
21 3syl_A Protein CBBX; photosynt 99.4 2.3E-13 7.8E-18 103.3 8.0 103 1-103 134-260 (309)
22 2z4s_A Chromosomal replication 99.4 1.2E-12 4.2E-17 105.1 9.7 103 1-103 198-311 (440)
23 1l8q_A Chromosomal replication 99.4 6.7E-12 2.3E-16 96.3 11.3 102 1-104 102-214 (324)
24 3te6_A Regulatory protein SIR3 99.3 8.4E-12 2.9E-16 96.8 10.0 103 1-105 136-286 (318)
25 1in4_A RUVB, holliday junction 99.3 2.6E-11 9E-16 93.9 12.0 102 1-102 106-227 (334)
26 2v1u_A Cell division control p 99.3 5.1E-12 1.7E-16 97.7 7.9 103 1-103 134-254 (387)
27 1fnn_A CDC6P, cell division co 99.3 1.1E-11 3.8E-16 96.2 9.2 103 1-103 129-252 (389)
28 1ofh_A ATP-dependent HSL prote 99.3 7.1E-12 2.4E-16 94.6 7.8 102 1-102 120-270 (310)
29 2qby_B CDC6 homolog 3, cell di 99.2 1.4E-11 4.8E-16 95.7 7.0 104 1-105 137-252 (384)
30 4fcw_A Chaperone protein CLPB; 99.2 1.9E-11 6.5E-16 92.7 6.7 103 1-103 123-276 (311)
31 1g8p_A Magnesium-chelatase 38 99.2 2.4E-10 8.1E-15 87.8 10.7 103 1-103 148-300 (350)
32 2bjv_A PSP operon transcriptio 99.1 7.8E-10 2.7E-14 82.4 10.5 104 1-104 104-239 (265)
33 3vfd_A Spastin; ATPase, microt 99.1 5.4E-10 1.8E-14 88.0 9.6 101 1-101 211-328 (389)
34 2r44_A Uncharacterized protein 99.0 3.3E-09 1.1E-13 81.3 12.5 102 1-102 113-274 (331)
35 3pxi_A Negative regulator of g 99.0 1.3E-09 4.5E-14 92.4 10.9 102 1-102 583-721 (758)
36 1r6b_X CLPA protein; AAA+, N-t 99.0 5.5E-10 1.9E-14 94.6 8.5 103 1-103 561-713 (758)
37 3m6a_A ATP-dependent protease 99.0 1.7E-10 5.9E-15 94.9 4.8 102 1-102 179-312 (543)
38 2qby_A CDC6 homolog 1, cell di 99.0 5.6E-10 1.9E-14 86.1 7.3 103 1-103 132-250 (386)
39 3b9p_A CG5977-PA, isoform A; A 99.0 2E-09 6.7E-14 81.3 10.0 100 1-100 117-235 (297)
40 2qp9_X Vacuolar protein sortin 99.0 2.7E-09 9.2E-14 83.3 11.1 99 1-99 147-262 (355)
41 1ojl_A Transcriptional regulat 99.0 4.3E-09 1.5E-13 80.6 11.2 105 1-105 100-235 (304)
42 1um8_A ATP-dependent CLP prote 99.0 6.7E-10 2.3E-14 86.8 6.4 103 1-103 141-337 (376)
43 1d2n_A N-ethylmaleimide-sensit 98.9 1.5E-09 5.2E-14 81.2 6.5 99 1-104 128-248 (272)
44 3d8b_A Fidgetin-like protein 1 98.9 4.8E-09 1.6E-13 81.9 9.5 101 1-101 180-298 (357)
45 3eie_A Vacuolar protein sortin 98.9 6.8E-09 2.3E-13 79.8 9.9 100 1-100 114-230 (322)
46 2zan_A Vacuolar protein sortin 98.9 5.3E-09 1.8E-13 84.0 8.6 101 1-101 231-348 (444)
47 1xwi_A SKD1 protein; VPS4B, AA 98.8 2.6E-08 9E-13 76.7 11.1 100 1-100 109-225 (322)
48 1qvr_A CLPB protein; coiled co 98.8 4E-09 1.4E-13 90.6 6.7 103 1-103 664-817 (854)
49 2qz4_A Paraplegin; AAA+, SPG7, 98.8 1.2E-07 4.2E-12 69.7 12.5 103 1-103 102-227 (262)
50 3dzd_A Transcriptional regulat 98.8 3.8E-08 1.3E-12 77.3 9.6 105 1-105 226-361 (368)
51 3h4m_A Proteasome-activating n 98.7 4.9E-08 1.7E-12 73.0 9.1 100 1-101 114-237 (285)
52 3k1j_A LON protease, ATP-depen 98.7 2.3E-08 7.7E-13 83.1 5.5 102 1-102 205-352 (604)
53 1qvr_A CLPB protein; coiled co 98.6 6E-08 2E-12 83.4 5.4 100 1-102 267-389 (854)
54 3pxg_A Negative regulator of g 98.5 4.2E-08 1.4E-12 79.2 2.7 93 9-103 275-383 (468)
55 1w5s_A Origin recognition comp 98.5 3.2E-07 1.1E-11 71.4 7.1 102 1-102 142-270 (412)
56 1u0j_A DNA replication protein 98.4 2.2E-07 7.6E-12 70.3 5.2 76 1-77 151-259 (267)
57 3hws_A ATP-dependent CLP prote 98.4 2.9E-07 1E-11 71.5 4.9 103 1-103 120-320 (363)
58 1r6b_X CLPA protein; AAA+, N-t 98.4 3.7E-07 1.3E-11 77.3 5.3 99 1-101 282-405 (758)
59 1lv7_A FTSH; alpha/beta domain 98.4 1.3E-06 4.6E-11 64.4 7.7 101 1-103 108-230 (257)
60 1ny5_A Transcriptional regulat 98.3 5.1E-06 1.7E-10 65.5 10.6 106 1-106 235-371 (387)
61 1g41_A Heat shock protein HSLU 98.3 9.2E-07 3.2E-11 71.3 6.1 102 1-102 254-404 (444)
62 3cf0_A Transitional endoplasmi 98.3 1.8E-06 6.2E-11 65.6 7.3 87 1-88 112-218 (301)
63 1jbk_A CLPB protein; beta barr 98.3 2E-07 7E-12 64.5 1.8 62 1-64 119-194 (195)
64 3f9v_A Minichromosome maintena 98.2 2.1E-06 7.3E-11 71.3 7.5 101 1-101 395-563 (595)
65 2qen_A Walker-type ATPase; unk 98.2 1.3E-05 4.4E-10 60.7 10.8 99 1-100 132-248 (350)
66 3nbx_X ATPase RAVA; AAA+ ATPas 98.2 8.6E-06 2.9E-10 66.5 9.1 101 1-101 113-262 (500)
67 3pxi_A Negative regulator of g 98.2 1.2E-06 4.2E-11 74.2 4.2 95 2-102 272-382 (758)
68 3hu3_A Transitional endoplasmi 98.1 1.9E-06 6.4E-11 70.2 4.8 100 1-101 301-418 (489)
69 2ce7_A Cell division protein F 98.1 5.4E-06 1.9E-10 67.3 7.1 100 1-102 112-233 (476)
70 2r62_A Cell division protease 98.0 3.1E-07 1.1E-11 68.1 -2.5 102 1-103 107-231 (268)
71 3t15_A Ribulose bisphosphate c 97.9 0.00014 4.6E-09 55.1 10.6 88 1-91 103-220 (293)
72 4b4t_J 26S protease regulatory 97.9 5.2E-05 1.8E-09 60.4 8.3 95 1-97 245-364 (405)
73 2p65_A Hypothetical protein PF 97.9 3.7E-06 1.3E-10 58.0 1.4 54 1-56 119-187 (187)
74 2fna_A Conserved hypothetical 97.8 0.00012 4.1E-09 55.4 8.6 98 1-101 141-253 (357)
75 1iy2_A ATP-dependent metallopr 97.7 0.00013 4.6E-09 54.3 8.3 100 1-102 136-257 (278)
76 1ixz_A ATP-dependent metallopr 97.7 9E-05 3.1E-09 54.4 7.1 100 1-102 112-233 (254)
77 3n70_A Transport activator; si 97.7 4E-05 1.4E-09 52.0 4.1 55 1-55 80-144 (145)
78 4b4t_L 26S protease subunit RP 97.6 0.00018 6.1E-09 57.8 8.2 95 1-96 278-396 (437)
79 4b4t_I 26S protease regulatory 97.6 0.00055 1.9E-08 55.0 10.5 95 1-97 279-398 (437)
80 4b4t_M 26S protease regulatory 97.6 0.00015 5E-09 58.3 6.6 94 1-96 278-396 (434)
81 2dhr_A FTSH; AAA+ protein, hex 97.5 5.5E-05 1.9E-09 61.7 4.1 101 1-103 127-249 (499)
82 3co5_A Putative two-component 97.5 7.1E-05 2.4E-09 50.6 3.9 55 1-55 79-142 (143)
83 4b4t_H 26S protease regulatory 97.5 0.00034 1.2E-08 56.6 7.7 94 1-96 306-424 (467)
84 3f8t_A Predicted ATPase involv 97.4 0.00087 3E-08 54.6 8.9 85 1-86 304-426 (506)
85 4b4t_K 26S protease regulatory 97.3 0.00052 1.8E-08 55.0 6.8 94 1-96 269-388 (428)
86 2kjq_A DNAA-related protein; s 96.8 0.00072 2.5E-08 46.2 2.9 48 1-48 87-140 (149)
87 3cf2_A TER ATPase, transitiona 96.8 0.00094 3.2E-08 57.4 4.2 88 1-89 301-405 (806)
88 1ypw_A Transitional endoplasmi 96.3 0.00016 5.6E-09 61.9 -3.6 70 1-70 574-663 (806)
89 3cf2_A TER ATPase, transitiona 96.1 0.0016 5.6E-08 55.9 1.4 96 1-97 574-693 (806)
90 3ec2_A DNA replication protein 95.9 0.011 3.9E-07 40.7 5.0 39 1-39 104-145 (180)
91 1tue_A Replication protein E1; 95.8 0.0065 2.2E-07 44.3 3.3 56 1-56 107-180 (212)
92 1ye8_A Protein THEP1, hypothet 95.8 0.018 6.1E-07 40.3 5.5 64 1-66 103-174 (178)
93 1ypw_A Transitional endoplasmi 95.7 0.019 6.5E-07 49.2 6.2 90 1-91 301-407 (806)
94 2orw_A Thymidine kinase; TMTK, 94.3 0.03 1E-06 39.3 3.1 53 1-56 80-140 (184)
95 4akg_A Glutathione S-transfera 94.2 0.079 2.7E-06 50.9 6.4 70 1-70 1340-1433(2695)
96 2r2a_A Uncharacterized protein 93.8 0.012 4.1E-07 42.2 0.1 55 1-55 91-153 (199)
97 4ag6_A VIRB4 ATPase, type IV s 92.8 0.36 1.2E-05 37.3 7.3 83 1-89 266-362 (392)
98 2x8a_A Nuclear valosin-contain 92.6 0.35 1.2E-05 35.8 6.7 70 1-70 107-193 (274)
99 4akg_A Glutathione S-transfera 91.3 1.9 6.6E-05 41.7 11.3 98 1-101 701-836 (2695)
100 1t6n_A Probable ATP-dependent 89.2 0.32 1.1E-05 34.1 3.5 45 1-45 162-209 (220)
101 1z6t_A APAF-1, apoptotic prote 88.7 2.2 7.4E-05 34.4 8.5 92 1-102 240-332 (591)
102 2w58_A DNAI, primosome compone 88.6 0.18 6.3E-06 34.9 1.8 37 1-37 119-159 (202)
103 2a5y_B CED-4; apoptosis; HET: 87.5 0.67 2.3E-05 37.5 4.7 87 1-95 247-334 (549)
104 1vec_A ATP-dependent RNA helic 85.8 0.27 9.3E-06 34.0 1.3 38 1-38 150-188 (206)
105 3sfz_A APAF-1, apoptotic pepti 85.7 6.8 0.00023 34.0 10.3 87 1-97 240-327 (1249)
106 3llm_A ATP-dependent RNA helic 85.6 0.61 2.1E-05 33.3 3.2 37 1-38 180-220 (235)
107 2qgz_A Helicase loader, putati 84.9 0.28 9.7E-06 37.0 1.2 37 1-37 218-258 (308)
108 3vkg_A Dynein heavy chain, cyt 84.8 6.6 0.00023 38.8 10.4 102 1-102 1378-1524(3245)
109 2gxq_A Heat resistant RNA depe 84.5 0.3 1E-05 33.7 1.0 39 1-39 148-187 (207)
110 1qde_A EIF4A, translation init 84.2 0.34 1.2E-05 34.0 1.3 45 1-45 159-205 (224)
111 1rif_A DAR protein, DNA helica 84.1 0.72 2.5E-05 33.8 3.0 34 1-37 229-262 (282)
112 2pl3_A Probable ATP-dependent 83.4 0.38 1.3E-05 34.2 1.2 38 1-38 175-213 (236)
113 3iuy_A Probable ATP-dependent 82.8 0.44 1.5E-05 33.6 1.4 38 1-38 171-209 (228)
114 1q0u_A Bstdead; DEAD protein, 82.6 0.42 1.4E-05 33.5 1.2 45 1-45 154-200 (219)
115 3fmo_B ATP-dependent RNA helic 81.3 0.73 2.5E-05 34.4 2.2 38 1-38 239-278 (300)
116 3bor_A Human initiation factor 80.6 0.53 1.8E-05 33.6 1.1 38 1-38 177-215 (237)
117 3h1t_A Type I site-specific re 80.3 0.65 2.2E-05 37.8 1.7 37 1-37 306-342 (590)
118 3fe2_A Probable ATP-dependent 79.2 0.61 2.1E-05 33.3 1.0 38 1-38 180-218 (242)
119 2oxc_A Probable ATP-dependent 79.0 0.53 1.8E-05 33.4 0.7 38 1-38 170-209 (230)
120 1xti_A Probable ATP-dependent 78.9 1 3.5E-05 33.9 2.4 38 1-38 156-195 (391)
121 3vkg_A Dynein heavy chain, cyt 78.3 20 0.00068 35.7 11.1 98 2-102 661-797 (3245)
122 3ly5_A ATP-dependent RNA helic 77.9 0.72 2.5E-05 33.6 1.1 38 1-38 205-243 (262)
123 3ber_A Probable ATP-dependent 77.2 0.76 2.6E-05 33.2 1.1 38 1-38 190-228 (249)
124 2iut_A DNA translocase FTSK; n 76.7 8.6 0.00029 31.8 7.3 64 1-64 347-419 (574)
125 1wp9_A ATP-dependent RNA helic 75.8 1.8 6.3E-05 33.0 3.0 37 1-37 129-166 (494)
126 2dhy_A CUE domain-containing p 74.5 7.2 0.00024 22.9 4.7 50 52-105 13-62 (67)
127 1wgl_A TOLL-interacting protei 74.4 4.5 0.00015 23.1 3.7 30 74-103 22-51 (59)
128 2whx_A Serine protease/ntpase/ 74.3 3.1 0.00011 34.4 4.2 37 1-37 281-318 (618)
129 2v6i_A RNA helicase; membrane, 73.9 4.2 0.00014 31.8 4.7 13 1-13 97-109 (431)
130 2qxy_A Response regulator; reg 73.8 12 0.00041 23.4 6.3 58 12-70 61-121 (142)
131 2qv0_A Protein MRKE; structura 71.9 15 0.00053 22.9 7.1 45 25-69 81-126 (143)
132 3pey_A ATP-dependent RNA helic 71.6 1.6 5.6E-05 32.6 1.8 38 1-38 149-188 (395)
133 1g5t_A COB(I)alamin adenosyltr 71.3 3.9 0.00013 29.0 3.6 45 1-48 124-178 (196)
134 1fuu_A Yeast initiation factor 70.9 1.3 4.6E-05 33.2 1.1 38 1-38 166-204 (394)
135 3eiq_A Eukaryotic initiation f 70.6 1.2 4.2E-05 33.8 0.9 37 1-37 187-224 (414)
136 1hv8_A Putative ATP-dependent 70.6 1.1 3.7E-05 33.3 0.5 38 1-38 151-189 (367)
137 3cz5_A Two-component response 70.1 9.8 0.00034 24.3 5.2 72 14-87 67-141 (153)
138 1xx6_A Thymidine kinase; NESG, 70.1 3.7 0.00013 28.8 3.2 34 1-37 85-118 (191)
139 3fho_A ATP-dependent RNA helic 70.1 1.8 6.1E-05 34.6 1.7 38 1-38 263-302 (508)
140 3dkp_A Probable ATP-dependent 69.6 1.9 6.4E-05 30.6 1.6 40 1-40 179-224 (245)
141 2j0s_A ATP-dependent RNA helic 69.5 1.4 5E-05 33.5 1.0 37 1-37 183-220 (410)
142 3eul_A Possible nitrate/nitrit 69.2 18 0.00061 22.9 6.3 68 14-83 77-147 (152)
143 1jbe_A Chemotaxis protein CHEY 68.8 17 0.00058 22.1 6.5 47 26-72 78-127 (128)
144 3hdv_A Response regulator; PSI 68.5 11 0.00037 23.4 5.0 59 13-71 67-128 (136)
145 4aby_A DNA repair protein RECN 68.3 18 0.0006 27.7 7.1 37 1-37 319-356 (415)
146 1jql_B DNA polymerase III, del 68.2 8.7 0.0003 25.1 4.6 51 2-52 81-139 (140)
147 2z0m_A 337AA long hypothetical 67.6 1.9 6.6E-05 31.5 1.4 37 1-37 133-170 (337)
148 3n53_A Response regulator rece 67.4 15 0.00052 22.8 5.7 58 14-71 62-123 (140)
149 3o8b_A HCV NS3 protease/helica 67.1 5.7 0.0002 33.4 4.2 38 1-38 322-362 (666)
150 3kto_A Response regulator rece 66.9 20 0.00068 22.2 6.1 60 12-72 66-128 (136)
151 1otr_A Protein CUE2; protein-p 66.8 6.6 0.00023 21.6 3.1 28 74-101 17-44 (49)
152 3fht_A ATP-dependent RNA helic 66.5 2.1 7.3E-05 32.3 1.4 37 1-37 172-210 (412)
153 1wj7_A Hypothetical protein (R 66.1 20 0.00068 22.9 5.7 42 58-101 37-78 (104)
154 3h1g_A Chemotaxis protein CHEY 66.0 17 0.00057 22.4 5.5 43 26-68 80-125 (129)
155 1q02_A Sequestosome 1; helical 64.4 14 0.00047 20.6 4.1 43 57-100 7-49 (52)
156 3fmp_B ATP-dependent RNA helic 64.3 2.1 7.2E-05 33.6 1.1 38 1-38 239-278 (479)
157 1wrb_A DJVLGB; RNA helicase, D 64.1 2 7E-05 30.6 0.9 38 1-38 178-220 (253)
158 1dbw_A Transcriptional regulat 63.8 22 0.00075 21.6 5.9 45 25-69 73-120 (126)
159 3b2n_A Uncharacterized protein 62.9 24 0.00081 21.8 5.9 55 14-69 65-122 (133)
160 2oca_A DAR protein, ATP-depend 62.7 5.1 0.00018 31.6 3.0 33 1-36 229-262 (510)
161 2i3b_A HCR-ntpase, human cance 62.6 6.2 0.00021 27.4 3.2 63 1-66 109-182 (189)
162 1s2m_A Putative ATP-dependent 62.4 5.9 0.0002 29.9 3.2 37 1-37 167-204 (400)
163 2b8t_A Thymidine kinase; deoxy 62.3 9 0.00031 27.5 4.0 32 1-35 93-124 (223)
164 3jte_A Response regulator rece 62.3 25 0.00086 21.8 6.6 46 25-70 75-123 (143)
165 3upu_A ATP-dependent DNA helic 61.7 5.7 0.00019 31.3 3.1 35 1-38 132-166 (459)
166 4dad_A Putative pilus assembly 61.5 27 0.00091 21.8 7.7 61 10-71 79-142 (146)
167 4e7p_A Response regulator; DNA 61.2 26 0.0009 22.0 6.0 57 14-71 82-141 (150)
168 1k68_A Phytochrome response re 60.7 24 0.00081 21.6 5.5 56 14-69 71-130 (140)
169 3hdg_A Uncharacterized protein 60.4 20 0.00067 22.1 5.1 57 14-71 67-126 (137)
170 3cg0_A Response regulator rece 60.0 26 0.0009 21.5 5.7 55 14-70 71-128 (140)
171 2pl1_A Transcriptional regulat 59.3 26 0.00088 20.9 6.7 55 15-70 61-118 (121)
172 1dz3_A Stage 0 sporulation pro 59.2 14 0.00047 22.7 4.2 58 14-71 64-124 (130)
173 3snk_A Response regulator CHEY 59.1 15 0.00052 22.7 4.4 51 17-68 78-131 (135)
174 2jlq_A Serine protease subunit 59.0 10 0.00035 29.7 4.2 13 1-13 114-126 (451)
175 3cnb_A DNA-binding response re 59.0 29 0.00098 21.3 6.5 47 25-71 82-131 (143)
176 3gt7_A Sensor protein; structu 59.0 30 0.001 22.0 6.0 46 26-71 80-128 (154)
177 1tmy_A CHEY protein, TMY; chem 58.9 26 0.00089 20.9 5.4 53 14-67 63-118 (120)
178 3kta_B Chromosome segregation 58.5 13 0.00044 25.5 4.2 37 1-37 90-127 (173)
179 1i3c_A Response regulator RCP1 57.5 33 0.0011 21.6 6.0 56 14-69 77-136 (149)
180 2r25_B Osmosensing histidine p 56.5 32 0.0011 21.2 5.8 54 15-68 69-125 (133)
181 3euj_A Chromosome partition pr 56.5 9.3 0.00032 30.8 3.5 34 1-36 418-451 (483)
182 3nhm_A Response regulator; pro 56.1 31 0.0011 20.9 6.6 60 13-72 62-124 (133)
183 1w36_D RECD, exodeoxyribonucle 56.1 6.5 0.00022 32.4 2.6 34 1-37 266-299 (608)
184 1e69_A Chromosome segregation 56.0 27 0.00092 25.9 5.9 46 1-47 245-291 (322)
185 2j9r_A Thymidine kinase; TK1, 55.8 7.7 0.00026 27.9 2.7 34 1-37 105-138 (214)
186 1z96_A DNA-damage, UBA-domain 55.8 18 0.00062 18.1 5.9 24 75-98 16-39 (40)
187 1yks_A Genome polyprotein [con 55.6 13 0.00044 29.1 4.2 13 1-13 103-115 (440)
188 1k66_A Phytochrome response re 55.4 22 0.00077 22.0 4.8 44 26-69 91-137 (149)
189 3gl9_A Response regulator; bet 54.9 25 0.00086 21.3 4.9 43 26-68 75-120 (122)
190 3t6k_A Response regulator rece 54.6 30 0.001 21.4 5.3 47 26-72 77-126 (136)
191 2nsa_A Trigger factor, TF; cha 54.4 29 0.001 23.2 5.4 35 64-98 98-136 (170)
192 3i5x_A ATP-dependent RNA helic 54.3 8.6 0.0003 30.7 3.0 37 1-37 230-274 (563)
193 3cg4_A Response regulator rece 53.5 37 0.0013 20.9 7.8 45 25-69 79-126 (142)
194 1qo0_D AMIR; binding protein, 53.4 46 0.0016 22.0 9.3 52 17-68 69-123 (196)
195 3cu5_A Two component transcrip 53.4 38 0.0013 21.1 7.0 55 14-69 65-122 (141)
196 1xhf_A DYE resistance, aerobic 52.9 34 0.0012 20.4 6.3 44 26-69 73-119 (123)
197 3sqw_A ATP-dependent RNA helic 52.5 9.5 0.00033 30.8 3.0 37 1-37 179-223 (579)
198 2z83_A Helicase/nucleoside tri 52.5 17 0.00057 28.6 4.4 13 1-13 116-128 (459)
199 2zay_A Response regulator rece 52.4 39 0.0013 21.0 5.6 47 25-71 80-129 (147)
200 3lte_A Response regulator; str 52.2 24 0.00083 21.5 4.5 56 14-69 66-124 (132)
201 2wv9_A Flavivirin protease NS2 51.8 15 0.0005 30.8 4.1 38 1-40 336-377 (673)
202 4dra_A Centromere protein S; D 51.4 30 0.001 22.3 4.7 53 62-114 35-89 (113)
203 1nla_A Transcriptional repress 51.1 13 0.00044 21.5 2.7 29 58-86 16-44 (64)
204 3l9o_A ATP-dependent RNA helic 50.7 13 0.00044 33.0 3.8 37 1-37 294-331 (1108)
205 3lua_A Response regulator rece 50.7 41 0.0014 20.7 5.9 58 14-71 67-128 (140)
206 3auy_A DNA double-strand break 50.2 27 0.00093 26.5 5.2 47 1-48 309-356 (371)
207 1baz_A ARC repressor; transcri 49.1 16 0.00056 20.0 2.8 35 50-86 10-44 (53)
208 3e1s_A Exodeoxyribonuclease V, 48.6 9.4 0.00032 31.3 2.4 64 1-67 283-358 (574)
209 3hzh_A Chemotaxis response reg 48.6 22 0.00074 22.8 3.9 52 15-67 100-154 (157)
210 2p6r_A Afuhel308 helicase; pro 48.4 20 0.00068 29.7 4.4 38 1-38 142-183 (702)
211 3eod_A Protein HNR; response r 48.3 37 0.0013 20.5 4.9 55 14-69 67-125 (130)
212 2zj8_A DNA helicase, putative 48.3 8.8 0.0003 31.9 2.2 38 1-38 142-180 (720)
213 1dc7_A NTRC, nitrogen regulati 48.3 20 0.0007 21.4 3.6 45 25-69 73-120 (124)
214 1zgz_A Torcad operon transcrip 48.2 41 0.0014 20.0 5.8 44 26-69 72-118 (122)
215 3heb_A Response regulator rece 47.9 49 0.0017 20.7 6.4 44 26-69 88-134 (152)
216 3frr_A Uncharacterized protein 47.7 15 0.00051 25.9 3.1 38 38-78 144-182 (191)
217 1zh2_A KDP operon transcriptio 47.4 40 0.0014 19.9 4.9 45 26-70 71-118 (121)
218 3hv2_A Response regulator/HD d 47.3 50 0.0017 20.7 6.4 45 25-69 84-132 (153)
219 1oyw_A RECQ helicase, ATP-depe 47.2 4.5 0.00015 32.6 0.3 36 1-37 143-184 (523)
220 1vdl_A Ubiquitin carboxyl-term 47.0 44 0.0015 20.0 5.2 38 60-101 27-64 (80)
221 1z63_A Helicase of the SNF2/RA 46.9 4.3 0.00015 31.9 0.1 37 1-38 153-189 (500)
222 2qsj_A DNA-binding response re 46.6 36 0.0012 21.4 4.7 56 15-71 67-125 (154)
223 3f6p_A Transcriptional regulat 46.3 46 0.0016 20.0 5.1 54 13-68 61-117 (120)
224 1p6q_A CHEY2; chemotaxis, sign 45.9 30 0.001 20.9 4.1 43 26-68 80-125 (129)
225 2qr3_A Two-component system re 45.7 28 0.00096 21.4 4.0 46 25-70 78-126 (140)
226 2ius_A DNA translocase FTSK; n 45.5 29 0.00098 28.2 4.8 65 1-65 301-374 (512)
227 1h3o_A Transcription initiatio 45.3 16 0.00054 21.9 2.5 48 55-102 3-51 (75)
228 3b6e_A Interferon-induced heli 45.2 5.9 0.0002 27.0 0.6 12 1-12 166-177 (216)
229 1qkk_A DCTD, C4-dicarboxylate 45.2 55 0.0019 20.5 5.5 57 14-71 63-122 (155)
230 2pln_A HP1043, response regula 45.0 48 0.0016 20.3 5.1 42 27-68 86-131 (137)
231 3kht_A Response regulator; PSI 44.9 53 0.0018 20.3 6.3 45 25-69 79-127 (144)
232 3kcn_A Adenylate cyclase homol 44.6 56 0.0019 20.4 5.6 46 25-70 74-123 (151)
233 2fwr_A DNA repair protein RAD2 44.6 6.1 0.00021 30.8 0.7 34 1-37 196-229 (472)
234 2db3_A ATP-dependent RNA helic 44.4 7.2 0.00025 30.3 1.1 36 1-36 207-246 (434)
235 3qoq_A Alginate and motility r 44.4 13 0.00045 21.9 2.0 44 41-86 12-56 (69)
236 3crn_A Response regulator rece 43.9 53 0.0018 20.0 6.2 54 15-69 64-120 (132)
237 2qzj_A Two-component response 43.3 45 0.0015 20.6 4.7 43 27-69 75-120 (136)
238 1srr_A SPO0F, sporulation resp 43.2 51 0.0018 19.6 6.0 43 25-67 73-118 (124)
239 3i42_A Response regulator rece 41.7 56 0.0019 19.6 5.3 55 14-68 63-120 (127)
240 3h5i_A Response regulator/sens 41.5 61 0.0021 20.0 7.7 44 26-69 77-123 (140)
241 1p2f_A Response regulator; DRR 41.4 76 0.0026 21.3 6.0 57 14-71 59-118 (220)
242 2rjn_A Response regulator rece 41.3 64 0.0022 20.2 5.7 44 26-69 78-125 (154)
243 2i4i_A ATP-dependent RNA helic 41.1 8.2 0.00028 29.1 0.9 37 1-37 179-220 (417)
244 3to5_A CHEY homolog; alpha(5)b 41.1 39 0.0013 21.9 4.2 43 26-68 86-131 (134)
245 3mwy_W Chromo domain-containin 40.8 3.5 0.00012 35.0 -1.3 36 1-37 371-406 (800)
246 3f6c_A Positive transcription 40.7 45 0.0016 20.2 4.4 58 13-71 61-121 (134)
247 3cfy_A Putative LUXO repressor 39.8 65 0.0022 19.8 6.8 44 25-68 74-120 (137)
248 2g3q_A Protein YBL047C; endocy 39.3 40 0.0014 17.2 4.8 27 73-99 14-40 (43)
249 3a10_A Response regulator; pho 39.2 58 0.002 19.1 5.8 43 25-67 71-114 (116)
250 1taf_B TFIID TBP associated fa 39.1 36 0.0012 20.0 3.3 34 63-96 11-45 (70)
251 2va8_A SSO2462, SKI2-type heli 38.8 8.6 0.0003 31.9 0.8 37 1-38 149-186 (715)
252 2xgj_A ATP-dependent RNA helic 38.7 19 0.00065 31.6 2.9 38 1-38 196-234 (1010)
253 1e9r_A Conjugal transfer prote 38.1 11 0.00038 29.2 1.2 66 1-68 283-360 (437)
254 2jba_A Phosphate regulon trans 37.8 60 0.0021 19.3 4.6 44 26-69 75-121 (127)
255 3tbk_A RIG-I helicase domain; 37.7 22 0.00074 27.8 2.9 12 1-12 131-142 (555)
256 1tr8_A Conserved protein (MTH1 37.2 69 0.0024 20.1 4.7 39 54-98 63-101 (102)
257 3e2i_A Thymidine kinase; Zn-bi 36.7 30 0.001 24.9 3.3 33 1-36 105-137 (219)
258 2knz_A Ubiquilin-4; cytoplasm, 36.6 52 0.0018 17.8 6.5 43 55-100 6-49 (53)
259 2a9o_A Response regulator; ess 36.1 66 0.0023 18.8 5.6 44 26-69 71-117 (120)
260 1ys7_A Transcriptional regulat 35.7 1E+02 0.0034 20.8 7.4 57 14-71 67-126 (233)
261 4a4z_A Antiviral helicase SKI2 35.7 11 0.00038 33.0 1.0 37 1-37 151-188 (997)
262 4ad8_A DNA repair protein RECN 35.7 47 0.0016 26.4 4.7 49 1-50 421-470 (517)
263 1kgs_A DRRD, DNA binding respo 35.6 87 0.003 21.0 5.6 57 14-71 62-121 (225)
264 3gfo_A Cobalt import ATP-bindi 35.4 58 0.002 23.8 4.8 50 1-50 165-217 (275)
265 1z3i_X Similar to RAD54-like; 35.3 13 0.00046 30.6 1.4 37 1-38 196-232 (644)
266 2ooa_A E3 ubiquitin-protein li 35.0 59 0.002 18.0 4.4 29 73-101 21-49 (52)
267 2orv_A Thymidine kinase; TP4A 34.6 30 0.001 25.2 3.0 32 1-36 94-125 (234)
268 2w00_A HSDR, R.ECOR124I; ATP-b 34.1 20 0.00069 31.7 2.3 35 1-37 405-439 (1038)
269 4hv0_A AVTR; ribbon-helix-heli 34.1 32 0.0011 21.8 2.7 30 57-86 6-35 (106)
270 2yz2_A Putative ABC transporte 33.9 81 0.0028 22.7 5.4 50 1-50 160-211 (266)
271 1mvo_A PHOP response regulator 33.1 81 0.0028 19.0 6.7 57 14-71 63-122 (136)
272 1ify_A HHR23A, UV excision rep 32.7 59 0.002 17.3 3.5 26 75-100 20-45 (49)
273 1mb3_A Cell division response 32.6 78 0.0027 18.6 5.1 43 26-68 74-119 (124)
274 2vc6_A MOSA, dihydrodipicolina 31.8 1.4E+02 0.0047 21.9 6.4 96 5-100 46-176 (292)
275 2ahq_A Sigma-54, RNA polymeras 31.5 48 0.0017 19.7 3.1 24 54-81 37-60 (76)
276 2o0j_A Terminase, DNA packagin 31.3 60 0.002 25.2 4.4 36 1-37 277-314 (385)
277 3rqi_A Response regulator prot 31.3 69 0.0024 21.0 4.3 53 15-68 68-123 (184)
278 2bsq_E FITA, trafficking prote 31.3 43 0.0015 20.0 2.8 36 50-86 3-38 (77)
279 1g6h_A High-affinity branched- 31.0 72 0.0025 22.8 4.6 49 1-49 175-225 (257)
280 2xau_A PRE-mRNA-splicing facto 30.9 35 0.0012 29.0 3.2 35 1-36 212-250 (773)
281 4a2p_A RIG-I, retinoic acid in 30.9 20 0.00069 28.1 1.7 12 1-12 134-145 (556)
282 2cp8_A NEXT to BRCA1 gene 1 pr 30.8 72 0.0025 17.7 4.0 35 67-102 15-49 (54)
283 4h41_A Putative alpha-L-fucosi 30.8 25 0.00084 27.1 2.1 66 2-74 38-115 (340)
284 1vg5_A RSGI RUH-014, rhomboid 30.6 85 0.0029 18.4 4.9 28 73-100 39-66 (73)
285 3exa_A TRNA delta(2)-isopenten 30.3 53 0.0018 25.0 3.9 57 51-110 113-178 (322)
286 2jy5_A Ubiquilin-1; UBA, alter 30.3 69 0.0023 17.3 4.2 29 70-99 21-49 (52)
287 1vt4_I APAF-1 related killer D 29.6 59 0.002 29.4 4.5 58 1-67 248-310 (1221)
288 3grc_A Sensor protein, kinase; 29.4 98 0.0033 18.8 4.8 48 25-72 78-129 (140)
289 3dzd_A Transcriptional regulat 29.3 1.8E+02 0.0063 21.9 7.1 56 16-72 62-120 (368)
290 3oiy_A Reverse gyrase helicase 29.1 11 0.00038 28.7 -0.1 10 1-10 143-152 (414)
291 1w4r_A Thymidine kinase; type 28.5 37 0.0013 23.9 2.6 31 1-35 95-125 (195)
292 2b4a_A BH3024; flavodoxin-like 27.9 85 0.0029 19.1 4.1 47 24-73 85-134 (138)
293 2bwb_A Ubiquitin-like protein 27.5 74 0.0025 16.7 6.0 30 69-99 15-44 (46)
294 2cp9_A EF-TS, EF-TSMT, elongat 27.5 92 0.0031 17.8 3.8 33 68-102 17-49 (64)
295 4a2q_A RIG-I, retinoic acid in 27.4 44 0.0015 28.1 3.3 12 1-12 375-386 (797)
296 1s8n_A Putative antiterminator 27.3 99 0.0034 20.5 4.6 54 14-69 74-130 (205)
297 1s96_A Guanylate kinase, GMP k 27.0 63 0.0021 22.6 3.6 49 9-66 115-164 (219)
298 3ilh_A Two component response 26.9 1.1E+02 0.0037 18.5 5.6 43 26-68 91-137 (146)
299 1u9p_A PARC; unknown function; 26.9 49 0.0017 21.6 2.7 28 59-86 28-55 (120)
300 1f2t_B RAD50 ABC-ATPase; DNA d 26.8 1.2E+02 0.0043 19.7 4.9 37 1-37 85-123 (148)
301 2k9i_A Plasmid PRN1, complete 26.7 58 0.002 17.1 2.7 20 58-77 18-37 (55)
302 2gwr_A DNA-binding response re 26.3 1.3E+02 0.0045 20.4 5.3 55 14-70 65-122 (238)
303 3r0j_A Possible two component 26.3 1.3E+02 0.0045 20.7 5.3 58 13-71 82-142 (250)
304 2dae_A KIAA0733 protein; mitog 26.1 68 0.0023 19.0 3.0 32 71-102 20-51 (75)
305 2d2e_A SUFC protein; ABC-ATPas 26.0 94 0.0032 22.1 4.5 48 1-48 165-215 (250)
306 3vh5_A CENP-S; histone fold, c 25.9 71 0.0024 21.4 3.4 53 62-114 27-81 (140)
307 2qvg_A Two component response 25.8 1.2E+02 0.004 18.4 5.2 41 26-66 88-131 (143)
308 2nq2_C Hypothetical ABC transp 25.8 38 0.0013 24.4 2.3 50 1-50 150-202 (253)
309 1w1w_A Structural maintenance 25.7 69 0.0024 24.7 3.9 37 1-37 359-397 (430)
310 2pjz_A Hypothetical protein ST 25.4 1.1E+02 0.0037 22.1 4.7 47 1-49 150-198 (263)
311 3q9s_A DNA-binding response re 25.3 1.7E+02 0.0059 20.2 6.1 56 13-70 96-154 (249)
312 2dah_A Ubiquilin-3; UBA domain 25.1 92 0.0031 17.0 3.4 31 70-101 18-48 (54)
313 3b0b_B CENP-S, centromere prot 24.8 1E+02 0.0035 19.5 4.0 52 63-114 28-81 (107)
314 2kpo_A Rossmann 2X2 fold prote 24.8 20 0.0007 21.9 0.5 57 14-70 35-99 (110)
315 1a04_A Nitrate/nitrite respons 24.7 1.6E+02 0.0054 19.5 6.6 57 14-71 67-126 (215)
316 2v1x_A ATP-dependent DNA helic 24.7 10 0.00035 31.1 -1.1 11 1-11 169-179 (591)
317 3v9r_A MHF1, uncharacterized p 24.4 71 0.0024 19.6 3.0 44 71-114 29-74 (90)
318 2ykg_A Probable ATP-dependent 24.2 31 0.0011 28.1 1.7 12 1-12 140-151 (696)
319 2eyq_A TRCF, transcription-rep 24.1 65 0.0022 28.7 3.8 33 1-37 729-762 (1151)
320 2ba3_A NIKA; dimer, bacterial 24.0 84 0.0029 16.5 3.0 32 45-78 13-44 (51)
321 2cpw_A CBL-interacting protein 23.6 1.1E+02 0.0037 17.3 3.6 27 71-99 29-56 (64)
322 4a15_A XPD helicase, ATP-depen 23.1 18 0.00062 29.8 0.1 13 1-13 208-220 (620)
323 1p3q_Q VPS9P, vacuolar protein 23.0 23 0.00079 19.8 0.5 27 74-100 25-51 (54)
324 3a1y_A 50S ribosomal protein P 23.0 1.1E+02 0.0037 17.0 4.6 39 54-96 16-55 (58)
325 2ayx_A Sensor kinase protein R 22.9 2E+02 0.0067 20.0 6.9 44 26-69 200-246 (254)
326 1ji0_A ABC transporter; ATP bi 22.8 58 0.002 23.1 2.8 47 1-47 161-209 (240)
327 2w0m_A SSO2452; RECA, SSPF, un 22.6 1E+02 0.0035 20.6 4.0 37 1-37 127-168 (235)
328 3hou_D DNA-directed RNA polyme 22.5 1.8E+02 0.0062 20.9 5.2 51 50-102 149-199 (221)
329 3h87_C Putative uncharacterize 22.4 81 0.0028 18.6 2.9 37 50-87 4-40 (73)
330 3thg_A Ribulose bisphosphate c 22.2 1.6E+02 0.0054 18.7 5.0 49 52-102 2-50 (107)
331 4a2w_A RIG-I, retinoic acid in 22.0 62 0.0021 28.0 3.2 12 1-12 375-386 (936)
332 1mnt_A MNT repressor; transcri 22.0 81 0.0028 18.5 2.9 29 58-86 13-41 (76)
333 3c3m_A Response regulator rece 21.9 1.4E+02 0.0049 18.0 5.6 56 14-69 63-122 (138)
334 1vej_A Riken cDNA 4931431F19; 21.8 1.2E+02 0.0041 17.8 3.6 30 70-100 38-67 (74)
335 3ggy_A Increased sodium tolera 21.8 42 0.0014 23.7 1.8 34 40-76 151-185 (193)
336 2jk1_A HUPR, hydrogenase trans 21.8 1.4E+02 0.0049 18.0 7.4 56 14-70 60-119 (139)
337 1wji_A Tudor domain containing 21.2 1.2E+02 0.0042 17.0 5.1 29 73-101 19-47 (63)
338 3eqz_A Response regulator; str 21.2 1.4E+02 0.0048 17.7 4.7 57 12-69 60-124 (135)
339 2hqr_A Putative transcriptiona 20.6 2E+02 0.0067 19.2 5.7 57 14-71 56-116 (223)
340 3luf_A Two-component system re 20.4 2.3E+02 0.0078 19.8 7.0 57 13-69 184-244 (259)
341 2krk_A 26S protease regulatory 20.3 22 0.00075 21.3 0.0 44 52-96 8-55 (86)
342 1b0u_A Histidine permease; ABC 20.1 49 0.0017 23.9 1.9 50 1-50 175-226 (262)
343 1xmk_A Double-stranded RNA-spe 20.1 72 0.0025 18.9 2.4 49 52-101 4-53 (79)
344 3n0r_A Response regulator; sig 20.0 62 0.0021 23.5 2.5 46 27-72 233-279 (286)
No 1
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.90 E-value=1.1e-23 Score=163.23 Aligned_cols=135 Identities=30% Similarity=0.475 Sum_probs=124.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCC-HH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLP-HQ 78 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~-~~ 78 (137)
++|||+|.|+..++++|++++|+++.++.||++|+++.++ ++++|||..++|++|+.+++..+|..+++++|+.++ ++
T Consensus 138 lilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (354)
T 1sxj_E 138 VIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKD 217 (354)
T ss_dssp EEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSH
T ss_pred EEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhcCC-CcccCccc-cCCcHHHHHHHHHHHHhcCCC
Q 042716 79 LAEKIADNSKNNLRQAIRSFEASRQMNY-PFVEGQVI-LTGWEDDITNIATKIIEEQSP 135 (137)
Q Consensus 79 ~l~~i~~~~~gd~R~aln~L~~~~~~~~-~~~~~~~~-~~~~~~~~~~i~~~i~~~~~~ 135 (137)
++..+++.++||+|.+++.|+.+...+. .++...++ ..+|+..++++++.++..+.+
T Consensus 218 ~l~~i~~~~~G~~r~a~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 276 (354)
T 1sxj_E 218 ILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSV 276 (354)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTHHHHTTTTEECSSCCCCCCHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCCcCcCcCCCCccHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999999987665 57777666 366899999999999887543
No 2
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.86 E-value=2.2e-21 Score=150.59 Aligned_cols=132 Identities=19% Similarity=0.321 Sum_probs=116.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|||+|.|+.+++++|++++|+++.+++||++||.+.++ ++|+|||..+.|.+++.+++..++..+++++|+.+++++
T Consensus 114 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~ 193 (340)
T 1sxj_C 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 193 (340)
T ss_dssp EEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 4799999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCC-----CcccCccc-c--CCcHHHHHHHHHHHHhc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNY-----PFVEGQVI-L--TGWEDDITNIATKIIEE 132 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~-----~~~~~~~~-~--~~~~~~~~~i~~~i~~~ 132 (137)
+..+++.++||+|.+++.|+.+..... .++.+.+. . ..++..+.++++.+..+
T Consensus 194 ~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~~~ 254 (340)
T 1sxj_C 194 EKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILED 254 (340)
T ss_dssp HHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCHHHHHHHHHHHHcC
Confidence 999999999999999999998875433 35555553 2 23577788888887764
No 3
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.83 E-value=1.8e-20 Score=144.08 Aligned_cols=130 Identities=17% Similarity=0.365 Sum_probs=105.6
Q ss_pred CcccccCcCC-HHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHH-------HHHHHHHHHHHc
Q 042716 1 IILCEADKLS-TDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQE-------IVEVLEFIAEQE 71 (137)
Q Consensus 1 iiiDEid~l~-~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~-------i~~~l~~i~~~e 71 (137)
++|||+|.|+ ++++++|++++|+++.+++||++||.+.++ ++|+|||.++.|++|+.++ +..++..++.++
T Consensus 109 liiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~ 188 (324)
T 3u61_B 109 IVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHE 188 (324)
T ss_dssp EEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 5899999999 999999999999999999999999999999 9999999999999999876 567788889999
Q ss_pred CCCCCH-HHHHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc-cCCcHHHHHHHHHHHHh
Q 042716 72 GIQLPH-QLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI-LTGWEDDITNIATKIIE 131 (137)
Q Consensus 72 gi~i~~-~~l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~i~~ 131 (137)
|+.+++ +++..+++.++||+|.++|.|+.+. .+..++.+.+. ..+.+..+.++++.+..
T Consensus 189 ~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~~i~~~~v~~~~~~~~~i~~~~~~~~~ 249 (324)
T 3u61_B 189 GIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKGVLDAGILSLVTNDRGAIDDVLESLKN 249 (324)
T ss_dssp TCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGTCBCC------------CHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCCCCHHHHHHHhCCHHHHHHHHHHHHc
Confidence 999998 9999999999999999999999998 45556666554 22223344555555443
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.83 E-value=2e-20 Score=142.29 Aligned_cols=133 Identities=25% Similarity=0.425 Sum_probs=118.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|||+|.|+.+++++|++++|+++.+++||++||...++ ++++|||..++|.+|+.+++..++..+++++|+.+++++
T Consensus 106 liiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 185 (319)
T 2chq_A 106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185 (319)
T ss_dssp EEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHH
T ss_pred EEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc-c--CCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI-L--TGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.|+.+...+..++.+.+. . ...+..+.++++.++.++
T Consensus 186 l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~ 242 (319)
T 2chq_A 186 LEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGN 242 (319)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999988765556666554 2 235667788888877653
No 5
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.83 E-value=5e-20 Score=140.47 Aligned_cols=133 Identities=26% Similarity=0.463 Sum_probs=118.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|||+|.++.+++++|++++|+++.+++||++||.+.++ ++++|||..+.|++++.+++..++..++.++|+.+++++
T Consensus 114 liiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 193 (327)
T 1iqp_A 114 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEG 193 (327)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHH
T ss_pred EEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc-c--CCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI-L--TGWEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+++.++.+......++.+.+. . ...+..+.++++.++.++
T Consensus 194 ~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~ 250 (327)
T 1iqp_A 194 LQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGN 250 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999888655556655554 2 236777888888877643
No 6
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.81 E-value=5.4e-20 Score=142.94 Aligned_cols=97 Identities=19% Similarity=0.198 Sum_probs=90.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|+.++.||++|+++.++ ++|+|||+.++|++|+.+++..+|.+.+ .+++++
T Consensus 112 viIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~ 186 (334)
T 1a5t_A 112 VWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDA 186 (334)
T ss_dssp EEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHH
T ss_pred EEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHH
Confidence 5899999999999999999999999999999999999999 9999999999999999999999998754 678999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
+..++..++||+|.+++.++...
T Consensus 187 ~~~l~~~s~G~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 187 LLAALRLSAGSPGAALALFQGDN 209 (334)
T ss_dssp HHHHHHHTTTCHHHHHHTTSSHH
T ss_pred HHHHHHHcCCCHHHHHHHhccch
Confidence 99999999999999999987654
No 7
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.80 E-value=5.1e-20 Score=142.93 Aligned_cols=133 Identities=8% Similarity=0.010 Sum_probs=111.4
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCC------CCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcC
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDV------SKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEG 72 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~------~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~eg 72 (137)
|+|||+|. |+.+++++|++++|+|++++.||++|++. .++ ++|+|||.++.|.+++.+++..|+.++++++|
T Consensus 80 vii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g 159 (343)
T 1jr3_D 80 LLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLN 159 (343)
T ss_dssp EEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 58999999 99999999999999999999999999874 357 99999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhc--CCCcccCccc-cCC--cHHHHHHHHHHHHhcC
Q 042716 73 IQLPHQLAEKIADNSKNNLRQAIRSFEASRQM--NYPFVEGQVI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 73 i~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~--~~~~~~~~~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
+.++++++..+++.++||+|.+.+.|+.+... +..++.+.+. ..+ -+..++++++.++.++
T Consensus 160 ~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d 225 (343)
T 1jr3_D 160 LELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGK 225 (343)
T ss_dssp CEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCC
Confidence 99999999999999999999999999988763 2335544432 111 1234556666666554
No 8
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=3.1e-19 Score=135.86 Aligned_cols=113 Identities=23% Similarity=0.391 Sum_probs=104.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|||+|.|+.+++++|++++|+++.++.||++||...++ ++++|||..++|++|+.+++..++..+++++|+.+++++
T Consensus 111 iiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 190 (323)
T 1sxj_B 111 VILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDG 190 (323)
T ss_dssp EEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHH
T ss_pred EEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCcc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQV 113 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~ 113 (137)
+..++..++||+|.+++.|+........++.+.+
T Consensus 191 ~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v 224 (323)
T 1sxj_B 191 LEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNV 224 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCcCHHHH
Confidence 9999999999999999999988754444554444
No 9
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.78 E-value=3.2e-18 Score=132.89 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=113.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|||+|.|+.+++++|++++|+++.++.||++|++..++ ++++|||..+.|.+++.+++..++..+++++|+.+++++
T Consensus 123 liiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a 202 (373)
T 1jr3_A 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 202 (373)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHH
T ss_pred EEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcC-CCcccCccc-cCC--cHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMN-YPFVEGQVI-LTG--WEDDITNIATKIIEEQ 133 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~-~~~~~~~~~-~~~--~~~~~~~i~~~i~~~~ 133 (137)
+..++..++||+|.+.+.++.+...+ ..++.+.+. ..+ .+..+.++++.+..++
T Consensus 203 ~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~ 260 (373)
T 1jr3_A 203 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEAN 260 (373)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHHHTTCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999998776433 345544443 122 2555667777666543
No 10
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=1.5e-18 Score=133.86 Aligned_cols=103 Identities=29% Similarity=0.544 Sum_probs=99.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|||+|.++...+++|++++|+++.+++||++||++.++ ++++|||..+.|.+++.+++..++..++.++|+.+++++
T Consensus 137 liiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 216 (353)
T 1sxj_D 137 IILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGV 216 (353)
T ss_dssp EEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHH
T ss_pred EEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
+..+++.+.||+|.+++.|+.+..
T Consensus 217 l~~l~~~~~G~~r~~~~~l~~~~~ 240 (353)
T 1sxj_D 217 LERILDISAGDLRRGITLLQSASK 240 (353)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999997764
No 11
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=4.6e-19 Score=136.81 Aligned_cols=122 Identities=12% Similarity=0.143 Sum_probs=97.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+||||+|.|+.+++++|++++|+|++++.|||+|+++.++ ++|+|| +++|++++.+++..+|.+++ | +++++
T Consensus 86 viIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~---~--i~~~~ 158 (305)
T 2gno_A 86 VIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI---G--DLWEE 158 (305)
T ss_dssp EEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHHH---T--THHHH
T ss_pred EEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHHh---C--CCHHH
Confidence 5899999999999999999999999999999999999999 999999 99999999999999999877 3 56666
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHh---------cCCCcccCccc-cCC--cHH--HHHHHHHHHHhcCC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQ---------MNYPFVEGQVI-LTG--WED--DITNIATKIIEEQS 134 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~---------~~~~~~~~~~~-~~~--~~~--~~~~i~~~i~~~~~ 134 (137)
+ ..+.||+|.++|+++.... ..++ +.+.+. .++ .+. .++++++.+++++.
T Consensus 159 ~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~-~~~~v~~~~~~~~~~~~~v~~l~~ai~~~~~ 222 (305)
T 2gno_A 159 L----PLLERDFKTALEAYKLGAEKLSGLMESLKVLE-TEKLLKKVLSKGLEGYLACRELLERFSKVES 222 (305)
T ss_dssp C----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHTTTTTCSHHHHHHHHHHHHHHHHHSCG
T ss_pred H----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHccCCcchHHHHHHHHHHHCCCH
Confidence 5 5579999999999974321 1111 122222 233 333 78899999988764
No 12
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.76 E-value=1.6e-18 Score=139.82 Aligned_cols=101 Identities=17% Similarity=0.326 Sum_probs=94.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEe---------CC----CCCc-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCC---------SD----VSKL-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~---------n~----~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
+||||+|.|+.+++++|++++|+|+.+ .|||+| ++ +.++ ++|+|||+.++|++++.+++..+|+.
T Consensus 299 liIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~~ 377 (456)
T 2c9o_A 299 LFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKI 377 (456)
T ss_dssp EEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHHH
T ss_pred EEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHHH
Confidence 589999999999999999999999888 688888 44 5678 99999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHH
Q 042716 67 IAEQEGIQLPHQLAEKIADNS-KNNLRQAIRSFEASR 102 (137)
Q Consensus 67 i~~~egi~i~~~~l~~i~~~~-~gd~R~aln~L~~~~ 102 (137)
+++.+|+.++++++..++..+ +|++|.++++|+.+.
T Consensus 378 ~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~ 414 (456)
T 2c9o_A 378 RAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPAN 414 (456)
T ss_dssp HHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999763
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.72 E-value=5e-17 Score=116.45 Aligned_cols=108 Identities=29% Similarity=0.462 Sum_probs=101.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|||+|.+....++.|++.+++++.++++|++||.+..+ +++++||..+.|.+++.+++..++...+.++|+.+++++
T Consensus 106 liiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 185 (226)
T 2chg_A 106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185 (226)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHH
T ss_pred EEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5899999999999999999999988899999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcCCCc
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMNYPF 108 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~~~~ 108 (137)
+..+++.++||+|.+++.++.+...+..+
T Consensus 186 ~~~l~~~~~g~~r~l~~~l~~~~~~~~~I 214 (226)
T 2chg_A 186 LEALIYISGGDFRKAINALQGAAAIGEVV 214 (226)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSCB
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCcee
Confidence 99999999999999999999988665333
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.68 E-value=5.7e-16 Score=111.92 Aligned_cols=105 Identities=22% Similarity=0.224 Sum_probs=99.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
++|||+|.++...++.|++.+++++.++.+|++|+....+ +++++||..+.|++++.+++..++...+.++|+.+++++
T Consensus 130 lviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~ 209 (250)
T 1njg_A 130 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 209 (250)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred EEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 5899999999999999999999988889999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcC
Q 042716 80 AEKIADNSKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~~~~ 105 (137)
+..+++.++|++|.+.++++.+...+
T Consensus 210 ~~~l~~~~~G~~~~~~~~~~~~~~~~ 235 (250)
T 1njg_A 210 LQLLARAAEGSLRDALSLTDQAIASG 235 (250)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999887543
No 15
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=2e-16 Score=129.34 Aligned_cols=131 Identities=21% Similarity=0.363 Sum_probs=111.6
Q ss_pred CcccccCcCCHHHH---HHHHHHHHhccCCceEEEEeCCCC--CchhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCC
Q 042716 1 IILCEADKLSTDAL---LYMRWLLERYKGLNKVFFCCSDVS--KLQPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQL 75 (137)
Q Consensus 1 iiiDEid~l~~~~~---~~L~~~le~~~~~~~~Il~~n~~~--~i~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i 75 (137)
+||||+|.|+...+ ++|+.++++ .+.++|++||+.. .++++++||..+.|++|+.+++..+|..++.++|+.+
T Consensus 152 liIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i 229 (516)
T 1sxj_A 152 IIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL 229 (516)
T ss_dssp EEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC
T ss_pred EEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 58999999987655 889999984 5778999999875 3488999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCcccCccc--cCCcHH----HHHHHHHHHHhcC
Q 042716 76 PHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVEGQVI--LTGWED----DITNIATKIIEEQ 133 (137)
Q Consensus 76 ~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~~~~~--~~~~~~----~~~~i~~~i~~~~ 133 (137)
+++++..|++.++||+|.+++.|+.+...+..++.+.+. ...|++ ..+++++.++.++
T Consensus 230 ~~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~~ 293 (516)
T 1sxj_A 230 DPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQ 293 (516)
T ss_dssp CTTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBGG
T ss_pred CHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcCC
Confidence 999999999999999999999999988777777777654 222433 4678899888754
No 16
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.59 E-value=4.7e-15 Score=115.20 Aligned_cols=102 Identities=14% Similarity=0.225 Sum_probs=90.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeC------------CCCCc-hhhhhcceeeEecCCCHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCS------------DVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFI 67 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n------------~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i 67 (137)
+||||+|.|+.+++++|++.+|++... .++++++ .+..+ ++|+|||..+.|++|+.+++..++...
T Consensus 193 l~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 193 LFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp EEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHH
T ss_pred EEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHH
Confidence 589999999999999999999986654 3455554 24568 999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHh
Q 042716 68 AEQEGIQLPHQLAEKIADNSK-NNLRQAIRSFEASRQ 103 (137)
Q Consensus 68 ~~~egi~i~~~~l~~i~~~~~-gd~R~aln~L~~~~~ 103 (137)
+.++|+.++++++..+++.+. ||+|.++++|+.+..
T Consensus 272 ~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 272 CEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308 (368)
T ss_dssp HHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999999999998 999999999998654
No 17
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.57 E-value=4.8e-15 Score=119.60 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=87.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC--CCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHH-------
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV--SKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQ------- 70 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~--~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~------- 70 (137)
+||||+|.|+...|++|++.+|+ +.+.||++|+.. ..+ ++|+|||.++.|++|+.+++..++.+.+.+
T Consensus 110 LfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~ 187 (447)
T 3pvs_A 110 LFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGG 187 (447)
T ss_dssp EEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTT
T ss_pred EEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhcc
Confidence 58999999999999999999994 677888888655 368 999999999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC
Q 042716 71 EGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 71 egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~ 105 (137)
+++.++++++..++..++||+|.++|.|+.+....
T Consensus 188 ~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 188 QDIVLPDETRRAIAELVNGDARRALNTLEMMADMA 222 (447)
T ss_dssp SSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHS
T ss_pred ccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 67889999999999999999999999999887654
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.50 E-value=3.5e-13 Score=102.82 Aligned_cols=103 Identities=19% Similarity=0.180 Sum_probs=94.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc------------------CCceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK------------------GLNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~------------------~~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i 60 (137)
+||||+|.+....++.|++.+++.. .++.+|++||....+ ++|++|| .++.|.+|+.+++
T Consensus 94 l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~ 173 (324)
T 1hqc_A 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEEL 173 (324)
T ss_dssp EEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHH
T ss_pred EEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHH
Confidence 5899999999999999999999753 346799999999999 9999999 6999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
..++...+.+.|+.++++++..++.+++|++|.+.++++.+..
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 174 AQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764
No 19
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.48 E-value=2.7e-13 Score=104.38 Aligned_cols=102 Identities=19% Similarity=0.169 Sum_probs=93.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccC------------------CceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKG------------------LNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~------------------~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i 60 (137)
+||||+|.|....++.|++.+++... .+.+|.+||....+ ++|++|| ..+.|++|+.+++
T Consensus 110 l~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 110 LFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSEL 189 (338)
T ss_dssp EEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHH
T ss_pred EEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHH
Confidence 58999999999999999999997531 25788999998889 9999999 8999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
..++...+.+.++.++++++..++..+.|++|.+.+.++.+.
T Consensus 190 ~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 190 ALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVR 231 (338)
T ss_dssp HHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999753
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.47 E-value=2.5e-13 Score=98.75 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=90.7
Q ss_pred CcccccCcCCHHH--HHHHHHHHHhccCC-c-eEEEEeCCCC----Cc-hhhhhcc---eeeEecCCCHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDA--LLYMRWLLERYKGL-N-KVFFCCSDVS----KL-QPIKSLC---TVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 1 iiiDEid~l~~~~--~~~L~~~le~~~~~-~-~~Il~~n~~~----~i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~ 68 (137)
++|||+|.+.... ++.|+.+++..... . ++|++|+... .+ ++++||| ..+.|++|+.++...++...+
T Consensus 108 liiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 108 ICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp EEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHH
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHH
Confidence 5899999997766 88899998875433 2 5899988665 46 9999999 899999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 69 EQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 69 ~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
++.|+.++++++..+++.++||+|.+.+.++.+..
T Consensus 188 ~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 188 AMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDK 222 (242)
T ss_dssp HHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997764
No 21
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.44 E-value=2.3e-13 Score=103.33 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=93.1
Q ss_pred CcccccCcC---------CHHHHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcc-eeeEecCCCHHHHHHHH
Q 042716 1 IILCEADKL---------STDALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLC-TVIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l---------~~~~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc-~~i~~~~~~~~~i~~~l 64 (137)
++|||+|.| +...++.|+..+++++.++.+|+++|... .+ ++|+||| ..+.|++|+.+++..++
T Consensus 134 l~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il 213 (309)
T 3syl_A 134 LFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIA 213 (309)
T ss_dssp EEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHH
T ss_pred EEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHH
Confidence 589999988 88899999999999888899999997653 36 8999999 89999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHHHh
Q 042716 65 EFIAEQEGIQLPHQLAEKIADN--------SKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 65 ~~i~~~egi~i~~~~l~~i~~~--------~~gd~R~aln~L~~~~~ 103 (137)
...+.+.++.++++++..++.+ ..||+|.+.+.++.+..
T Consensus 214 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 214 GHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999986 45999999999998774
No 22
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.39 E-value=1.2e-12 Score=105.14 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=91.2
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhcc-CCceEEEEeCCCCC----c-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLST--DALLYMRWLLERYK-GLNKVFFCCSDVSK----L-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~~-~~~~~Il~~n~~~~----i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+.. ..|+.|+.+++... .+..+|++|+.++. + ++|+||| .++.|.+|+.++...+|...+.
T Consensus 198 L~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 198 LLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp EEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 58999999986 78999999998743 45678888887543 7 9999999 6999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
.+|+.++++++.+|+..++||+|.+.+.|+.+..
T Consensus 278 ~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~ 311 (440)
T 2z4s_A 278 IEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLV 311 (440)
T ss_dssp HHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997664
No 23
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.35 E-value=6.7e-12 Score=96.27 Aligned_cols=102 Identities=8% Similarity=0.153 Sum_probs=89.3
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhc-cCCceEEEEeCCCC----Cc-hhhhhcc---eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLST--DALLYMRWLLERY-KGLNKVFFCCSDVS----KL-QPIKSLC---TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~-~~~~~~Il~~n~~~----~i-~~l~SRc---~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+.. ..|+.++.+++.. ..+.++|++|+.++ .+ ++|+||| .++.|++ +.++...++...+.
T Consensus 102 L~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 102 LLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred EEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 58999999986 6788888888764 34567888887664 47 9999999 7899999 99999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhc
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQM 104 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~ 104 (137)
+.|+.++++++.+++..+ ||+|.+.+.|+.+...
T Consensus 181 ~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 181 EFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 999999999999999999 9999999999987754
No 24
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.32 E-value=8.4e-12 Score=96.78 Aligned_cols=103 Identities=13% Similarity=0.145 Sum_probs=83.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc---cCCceEEEEeCCCCC----c-hhhhhcc--eeeEecCCCHHHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERY---KGLNKVFFCCSDVSK----L-QPIKSLC--TVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~---~~~~~~Il~~n~~~~----i-~~l~SRc--~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
|+|||+|.|. .|+.|+.+++-+ ..+..+|+++|.... + +.++||| ..+.|++++.+++..+|++.++.
T Consensus 136 i~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 136 ILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp EEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 5899999999 788888887632 234557788888743 5 7889998 67999999999999999988875
Q ss_pred c--C---------------------------------CCCCHHHHHHHHH---HcCCcHHHHHHHHHHHHhcC
Q 042716 71 E--G---------------------------------IQLPHQLAEKIAD---NSKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 71 e--g---------------------------------i~i~~~~l~~i~~---~~~gd~R~aln~L~~~~~~~ 105 (137)
. | +.+++++++.+++ ...||+|.|+++|+.+....
T Consensus 214 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 214 LLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp HCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 3 1 1479999999999 57899999999999877543
No 25
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.30 E-value=2.6e-11 Score=93.89 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=89.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccC------------------CceEEEEeCCCCCc-hhhhhcce-eeEecCCCHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKG------------------LNKVFFCCSDVSKL-QPIKSLCT-VIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~------------------~~~~Il~~n~~~~i-~~l~SRc~-~i~~~~~~~~~i 60 (137)
++|||+|.+.+..++.|+..++.+.. ...++.+++.+..+ ++++|||. .+.|++++.+++
T Consensus 106 ~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l 185 (334)
T 1in4_A 106 LFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKEL 185 (334)
T ss_dssp EEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHH
T ss_pred EEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHH
Confidence 47999999999889999988876421 23466677888889 99999995 689999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
..+|++.++..|+.++++++..|+..+.||+|.++++|+.+.
T Consensus 186 ~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~ 227 (334)
T 1in4_A 186 KEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVR 227 (334)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998653
No 26
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.30 E-value=5.1e-12 Score=97.75 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=88.3
Q ss_pred CcccccCcCCHH--HHHHHHHHHHhc-----cCCceEEEEeCCC---CCc-hhhhhcc--eeeEecCCCHHHHHHHHHHH
Q 042716 1 IILCEADKLSTD--ALLYMRWLLERY-----KGLNKVFFCCSDV---SKL-QPIKSLC--TVIQLLPPSKQEIVEVLEFI 67 (137)
Q Consensus 1 iiiDEid~l~~~--~~~~L~~~le~~-----~~~~~~Il~~n~~---~~i-~~l~SRc--~~i~~~~~~~~~i~~~l~~i 67 (137)
++|||+|.+... .++.|..+++.. ..+..+|+++|.. ..+ ++++||| ..+.|++++.+++..++...
T Consensus 134 lilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~ 213 (387)
T 2v1u_A 134 IVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETR 213 (387)
T ss_dssp EEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHH
T ss_pred EEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 589999999877 788888888755 4567799999988 567 9999999 78999999999999999998
Q ss_pred HHH--cCCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHh
Q 042716 68 AEQ--EGIQLPHQLAEKIADNSK---NNLRQAIRSFEASRQ 103 (137)
Q Consensus 68 ~~~--egi~i~~~~l~~i~~~~~---gd~R~aln~L~~~~~ 103 (137)
+.. .+..++++++..++..+. ||+|.++++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 214 AEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp HHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 876 567889999999999998 999999999998764
No 27
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=1.1e-11 Score=96.17 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=90.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc----CCceEEEEeCCC---CCc-hhhhhcce--eeEecCCCHHHHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK----GLNKVFFCCSDV---SKL-QPIKSLCT--VIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~----~~~~~Il~~n~~---~~i-~~l~SRc~--~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
++|||+|.++...++.|++++++++ .++.+|++||.+ ..+ ++++|||. .+.|++++.+++..++...+..
T Consensus 129 lilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 129 LVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp EEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred EEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999998755 478899999988 568 99999986 6999999999999999998876
Q ss_pred c--CCCCCHHHHHHHHHHc---------CCcHHHHHHHHHHHHh
Q 042716 71 E--GIQLPHQLAEKIADNS---------KNNLRQAIRSFEASRQ 103 (137)
Q Consensus 71 e--gi~i~~~~l~~i~~~~---------~gd~R~aln~L~~~~~ 103 (137)
. ...++++++..++..+ .||+|.++++++.+..
T Consensus 209 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 209 GLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 2 2478999999999999 8999999999997764
No 28
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.29 E-value=7.1e-12 Score=94.61 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=83.0
Q ss_pred CcccccCcCCHHH------------HHHHHHHHHhc----------cCCceEEEEeC----CCCCc-hhhhhcc-eeeEe
Q 042716 1 IILCEADKLSTDA------------LLYMRWLLERY----------KGLNKVFFCCS----DVSKL-QPIKSLC-TVIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~------------~~~L~~~le~~----------~~~~~~Il~~n----~~~~i-~~l~SRc-~~i~~ 52 (137)
++|||+|.+.... ++.|+.++|.. ..++.||++++ .+..+ ++|+||| ..+.|
T Consensus 120 l~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~ 199 (310)
T 1ofh_A 120 VFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 199 (310)
T ss_dssp EEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEEC
T ss_pred EEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEc
Confidence 5899999998665 89999999963 23566777753 44567 9999999 46999
Q ss_pred cCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHH
Q 042716 53 LPPSKQEIVEVLE-----------FIAEQEGI--QLPHQLAEKIADNS--------KNNLRQAIRSFEASR 102 (137)
Q Consensus 53 ~~~~~~~i~~~l~-----------~i~~~egi--~i~~~~l~~i~~~~--------~gd~R~aln~L~~~~ 102 (137)
++|+.+++..++. ..+..+|. .+++++++.++..+ .||+|.+.+.++.+.
T Consensus 200 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 200 TALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 9999999998887 23344564 68999999999998 799999999999865
No 29
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=1.4e-11 Score=95.65 Aligned_cols=104 Identities=19% Similarity=0.138 Sum_probs=88.1
Q ss_pred CcccccCcCCHHH-HHH-HHHHHHhccCCceEEEEeCCC---CCc-hhhhhc-ceeeEecCCCHHHHHHHHHHHHHH--c
Q 042716 1 IILCEADKLSTDA-LLY-MRWLLERYKGLNKVFFCCSDV---SKL-QPIKSL-CTVIQLLPPSKQEIVEVLEFIAEQ--E 71 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~-L~~~le~~~~~~~~Il~~n~~---~~i-~~l~SR-c~~i~~~~~~~~~i~~~l~~i~~~--e 71 (137)
|+|||+|.+.... ++. +..+++.. .++.||++||.. ..+ ++++|| |..+.|++++.+++..++...+.+ .
T Consensus 137 lilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~ 215 (384)
T 2qby_B 137 IYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI 215 (384)
T ss_dssp EEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSC
T ss_pred EEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcc
Confidence 5899999997653 666 66666654 678899999988 568 999999 589999999999999999998875 4
Q ss_pred CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHhcC
Q 042716 72 GIQLPHQLAEKIADNSK---NNLRQAIRSFEASRQMN 105 (137)
Q Consensus 72 gi~i~~~~l~~i~~~~~---gd~R~aln~L~~~~~~~ 105 (137)
+..++++++..++..+. ||+|.++++|+.+....
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 216 KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 56889999999999988 99999999999887544
No 30
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.21 E-value=1.9e-11 Score=92.66 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=86.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCC--------------------------CCCc-hh
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSD--------------------------VSKL-QP 42 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~--------------------------~~~i-~~ 42 (137)
++|||+|.++...|+.|++++++.. .++.||++||. ...+ ++
T Consensus 123 l~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 202 (311)
T 4fcw_A 123 ILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPE 202 (311)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHH
T ss_pred EEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHH
Confidence 5899999999999999999999865 35559999998 3357 89
Q ss_pred hhhcc-eeeEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHh
Q 042716 43 IKSLC-TVIQLLPPSKQEIVEVLEFIAEQE---------GIQLPHQLAEKIADNSK---NNLRQAIRSFEASRQ 103 (137)
Q Consensus 43 l~SRc-~~i~~~~~~~~~i~~~l~~i~~~e---------gi~i~~~~l~~i~~~~~---gd~R~aln~L~~~~~ 103 (137)
|.+|| .++.|.+|+.+++..++...+.+. .+.++++++..++.++. |+.|.+.+.++.+..
T Consensus 203 l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 203 FLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 99999 789999999999998887765542 45789999999999764 999999999987664
No 31
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.16 E-value=2.4e-10 Score=87.79 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=79.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-------------cCCceEEEEeCCCC-Cc-hhhhhccee-eEecCCCHH-HHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-------------KGLNKVFFCCSDVS-KL-QPIKSLCTV-IQLLPPSKQ-EIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-------------~~~~~~Il~~n~~~-~i-~~l~SRc~~-i~~~~~~~~-~i~~~ 63 (137)
+||||+|.++...+++|+.++|+. +.++.+|.++|... .+ ++|+|||.. +.|++|++. +...+
T Consensus 148 l~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 148 LYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp EEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHH
T ss_pred EEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHH
Confidence 589999999999999999999973 12556777777644 68 999999965 999999654 33244
Q ss_pred HHHH-----------------------------HHHcCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHh
Q 042716 64 LEFI-----------------------------AEQEGIQLPHQLAEKIADNSKN----NLRQAIRSFEASRQ 103 (137)
Q Consensus 64 l~~i-----------------------------~~~egi~i~~~~l~~i~~~~~g----d~R~aln~L~~~~~ 103 (137)
+... ...+++.++++++..+++.+.+ ++|.+.++++.+..
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~ 300 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARA 300 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 4331 3345678999999999998777 89999999986543
No 32
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.09 E-value=7.8e-10 Score=82.38 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=82.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-----------cCCceEEEEeCCC-------CCc-hhhhhcce--eeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-----------KGLNKVFFCCSDV-------SKL-QPIKSLCT--VIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-----------~~~~~~Il~~n~~-------~~i-~~l~SRc~--~i~~~~~~~-- 57 (137)
++|||+|.++...|..|+.++++. +.++++|++||.. ..+ ++|.+|+. .+.++++..
T Consensus 104 l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~ 183 (265)
T 2bjv_A 104 LFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERE 183 (265)
T ss_dssp EEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCH
T ss_pred EEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhh
Confidence 589999999999999999999963 3567899999985 247 89999984 577877776
Q ss_pred HHHHHH----HHHHHHHcCC----CCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhc
Q 042716 58 QEIVEV----LEFIAEQEGI----QLPHQLAEKIADNS-KNNLRQAIRSFEASRQM 104 (137)
Q Consensus 58 ~~i~~~----l~~i~~~egi----~i~~~~l~~i~~~~-~gd~R~aln~L~~~~~~ 104 (137)
+++... +...+.+.|. .++++++..+..+. .||+|.+.+.++.+...
T Consensus 184 ~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 184 SDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 555544 4455566665 68999999998775 89999999999987643
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.08 E-value=5.4e-10 Score=87.99 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=84.7
Q ss_pred CcccccCcC-----------CHHHHHHHHHHHHhcc----CCceEEEEeCCCCCc-hhhhhcce-eeEecCCCHHHHHHH
Q 042716 1 IILCEADKL-----------STDALLYMRWLLERYK----GLNKVFFCCSDVSKL-QPIKSLCT-VIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l-----------~~~~~~~L~~~le~~~----~~~~~Il~~n~~~~i-~~l~SRc~-~i~~~~~~~~~i~~~ 63 (137)
|||||+|.| ....++.|+..++... .++.||.+||.+..+ +++++||. .+.|+.|+.++...+
T Consensus 211 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~i 290 (389)
T 3vfd_A 211 IFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLL 290 (389)
T ss_dssp EEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHH
T ss_pred EEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHH
Confidence 589999998 3445777888887543 346688889998889 99999994 799999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
+..++.+++..++++.+..++..+.|..+..++.|...
T Consensus 291 l~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~ 328 (389)
T 3vfd_A 291 LKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKD 328 (389)
T ss_dssp HHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999888777666443
No 34
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.04 E-value=3.3e-09 Score=81.30 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=80.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-----------cCCceEEEEeCCCC-----Cc-hhhhhcce-eeEecCCCHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-----------KGLNKVFFCCSDVS-----KL-QPIKSLCT-VIQLLPPSKQEIVE 62 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-----------~~~~~~Il~~n~~~-----~i-~~l~SRc~-~i~~~~~~~~~i~~ 62 (137)
++|||+|.+++..+++|+..+++. +..+.++.++|... .+ ++|+|||. .+.|.+|+.++...
T Consensus 113 l~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~ 192 (331)
T 2r44_A 113 ILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELE 192 (331)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHH
T ss_pred EEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHH
Confidence 589999999999999999999974 23344555555322 38 99999997 59999999999999
Q ss_pred HHHHHHHH----------------------cCCCCCHHHHHHHHHHc-----CC---------------cHHHHHHHHHH
Q 042716 63 VLEFIAEQ----------------------EGIQLPHQLAEKIADNS-----KN---------------NLRQAIRSFEA 100 (137)
Q Consensus 63 ~l~~i~~~----------------------egi~i~~~~l~~i~~~~-----~g---------------d~R~aln~L~~ 100 (137)
+|+..+.. .++.++++++.++++.+ .+ ++|.++++++.
T Consensus 193 il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~ 272 (331)
T 2r44_A 193 VMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRV 272 (331)
T ss_dssp HHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHH
T ss_pred HHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHH
Confidence 99877654 37889999999988754 23 69999999886
Q ss_pred HH
Q 042716 101 SR 102 (137)
Q Consensus 101 ~~ 102 (137)
+.
T Consensus 273 a~ 274 (331)
T 2r44_A 273 AK 274 (331)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 35
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.04 E-value=1.3e-09 Score=92.43 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=83.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHh-----------ccCCceEEEEeCCCCC------------c-hhhhhcc-eeeEecCC
Q 042716 1 IILCEADKLSTDALLYMRWLLER-----------YKGLNKVFFCCSDVSK------------L-QPIKSLC-TVIQLLPP 55 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~-----------~~~~~~~Il~~n~~~~------------i-~~l~SRc-~~i~~~~~ 55 (137)
++|||+|.++++.++.|+.++++ ...++.||++||.... + ++|++|| .++.|++|
T Consensus 583 l~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l 662 (758)
T 3pxi_A 583 VLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSL 662 (758)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--
T ss_pred EEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCC
Confidence 58999999999999999999998 3457889999996543 7 8999999 89999999
Q ss_pred CHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHH---cCCcHHHHHHHHHHHH
Q 042716 56 SKQEIVEVLEFIAEQ---------EGIQLPHQLAEKIADN---SKNNLRQAIRSFEASR 102 (137)
Q Consensus 56 ~~~~i~~~l~~i~~~---------egi~i~~~~l~~i~~~---~~gd~R~aln~L~~~~ 102 (137)
+.+++..++...+.+ .++.++++++.++++. ..|+.|.+-+.++...
T Consensus 663 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 663 EKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHV 721 (758)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Confidence 999999888776654 2457899999999875 3578888888887554
No 36
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.03 E-value=5.5e-10 Score=94.57 Aligned_cols=103 Identities=11% Similarity=0.120 Sum_probs=85.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCCC-------------------------Cc-hhh
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDVS-------------------------KL-QPI 43 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~~-------------------------~i-~~l 43 (137)
++|||+|.++++.++.|+.++|+.. .++.||++||... .+ ++|
T Consensus 561 l~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l 640 (758)
T 1r6b_X 561 LLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEF 640 (758)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHH
T ss_pred EEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHH
Confidence 5899999999999999999999742 4577999998743 56 899
Q ss_pred hhcc-eeeEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHh
Q 042716 44 KSLC-TVIQLLPPSKQEIVEVLEFIAEQE---------GIQLPHQLAEKIADNS---KNNLRQAIRSFEASRQ 103 (137)
Q Consensus 44 ~SRc-~~i~~~~~~~~~i~~~l~~i~~~e---------gi~i~~~~l~~i~~~~---~gd~R~aln~L~~~~~ 103 (137)
++|| .++.|++++.+++..++...+.+. ++.++++++.++++.+ +++.|.+.+.++....
T Consensus 641 ~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 641 RNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp HTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred HhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 9999 789999999999999888776532 3578999999999876 5668888888776653
No 37
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.02 E-value=1.7e-10 Score=94.88 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=78.8
Q ss_pred CcccccCcCCHH----HHHHHHHHHHhcc---------------CCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHH
Q 042716 1 IILCEADKLSTD----ALLYMRWLLERYK---------------GLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~----~~~~L~~~le~~~---------------~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i 60 (137)
++|||+|.+... .+++|+.+++... .++.||++||....+ ++|++||.++.|++|+.++.
T Consensus 179 l~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~ 258 (543)
T 3m6a_A 179 FLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEK 258 (543)
T ss_dssp EEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHH
T ss_pred EEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHH
Confidence 479999999887 4588999997532 456799999999999 99999999999999999999
Q ss_pred HHHHHHHH-----HHc-----CCCCCHHHHHHHHHHcC--CcHHHHHHHHHHHH
Q 042716 61 VEVLEFIA-----EQE-----GIQLPHQLAEKIADNSK--NNLRQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~-----~~e-----gi~i~~~~l~~i~~~~~--gd~R~aln~L~~~~ 102 (137)
..++.... ++. ++.++++++..++..+. |++|.+-+.++.+.
T Consensus 259 ~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~ 312 (543)
T 3m6a_A 259 LEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAIC 312 (543)
T ss_dssp HHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHH
Confidence 88887654 233 45778999999887654 67888777776543
No 38
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.02 E-value=5.6e-10 Score=86.06 Aligned_cols=103 Identities=22% Similarity=0.210 Sum_probs=83.3
Q ss_pred CcccccCcCC----HHHHHHHHHHHHhc-cCCceEEEEeCCCC---Cc-hhhhhcc--eeeEecCCCHHHHHHHHHHHHH
Q 042716 1 IILCEADKLS----TDALLYMRWLLERY-KGLNKVFFCCSDVS---KL-QPIKSLC--TVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 1 iiiDEid~l~----~~~~~~L~~~le~~-~~~~~~Il~~n~~~---~i-~~l~SRc--~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++|||+|.+. .+....|++.++.. ..+..+|++++..+ .+ +.++||| ..+.|++++.+++..++...+.
T Consensus 132 lilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 132 IVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp EEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 5899999996 44566677777542 44677899998874 57 8999999 7899999999999999998876
Q ss_pred HcC--CCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHh
Q 042716 70 QEG--IQLPHQLAEKIADNSK---NNLRQAIRSFEASRQ 103 (137)
Q Consensus 70 ~eg--i~i~~~~l~~i~~~~~---gd~R~aln~L~~~~~ 103 (137)
+.+ ..++++++..++..+. ||+|.++++++.+..
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 212 MAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp HHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 543 6789999999999988 999999999987764
No 39
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.01 E-value=2e-09 Score=81.27 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=82.8
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHhccC-----CceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHHHH
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLERYKG-----LNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEIVE 62 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~~~~-----~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i~~ 62 (137)
++|||+|.+. ...++.|+..++.++. ++.+|.+||.+..+ +++++|| ..+.|+.|+.++...
T Consensus 117 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~ 196 (297)
T 3b9p_A 117 IFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTREL 196 (297)
T ss_dssp EEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHH
T ss_pred EEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHH
Confidence 5899999983 4457788888887653 46688889999899 9999999 689999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH-HHHHH
Q 042716 63 VLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAI-RSFEA 100 (137)
Q Consensus 63 ~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~al-n~L~~ 100 (137)
.+...+.+.+..++++.+..++..+.|..+..+ ++++.
T Consensus 197 il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 197 LLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKD 235 (297)
T ss_dssp HHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999777555 44443
No 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.01 E-value=2.7e-09 Score=83.33 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=80.4
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHHhc---cCCceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHHHHHH
Q 042716 1 IILCEADKLST-----------DALLYMRWLLERY---KGLNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le~~---~~~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i~~~l 64 (137)
|||||+|.|.. ..++.|+..++.. ..++.+|.+||.+..+ +++++|| ..+.|+.|+.++...++
T Consensus 147 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il 226 (355)
T 2qp9_X 147 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF 226 (355)
T ss_dssp EEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred EEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHH
Confidence 58999999973 2477788888743 4467788889999999 9999999 78999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHH
Q 042716 65 EFIAEQEGIQLPHQLAEKIADNSKN-NLRQAIRSFE 99 (137)
Q Consensus 65 ~~i~~~egi~i~~~~l~~i~~~~~g-d~R~aln~L~ 99 (137)
+..+.+.+..+++..+..|+..+.| ..|.+-++++
T Consensus 227 ~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 227 EINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999888888899999999999988 3444444433
No 41
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.99 E-value=4.3e-09 Score=80.63 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=82.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcce--eeEecCCC--H
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCT--VIQLLPPS--K 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~--~i~~~~~~--~ 57 (137)
+||||+|.|+...|..|++++++.. .++++|++||.. ..+ ++|.+|+. .+.++++. .
T Consensus 100 L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~ 179 (304)
T 1ojl_A 100 LFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRR 179 (304)
T ss_dssp EEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGG
T ss_pred EEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhH
Confidence 5899999999999999999999752 457899999976 246 78999974 46677777 4
Q ss_pred HHHHHHHHH----HHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhcC
Q 042716 58 QEIVEVLEF----IAEQEG---IQLPHQLAEKIADNS-KNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 58 ~~i~~~l~~----i~~~eg---i~i~~~~l~~i~~~~-~gd~R~aln~L~~~~~~~ 105 (137)
+++...+.. .+.+.| ..++++++..+..++ .||+|.+.|.++.+....
T Consensus 180 edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 180 EDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 666655544 344444 578999999999997 999999999999877644
No 42
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.98 E-value=6.7e-10 Score=86.84 Aligned_cols=103 Identities=14% Similarity=0.051 Sum_probs=79.7
Q ss_pred CcccccCcCCHH--------------HHHHHHHHHHhcc---------------------CCceEEEEeCC---------
Q 042716 1 IILCEADKLSTD--------------ALLYMRWLLERYK---------------------GLNKVFFCCSD--------- 36 (137)
Q Consensus 1 iiiDEid~l~~~--------------~~~~L~~~le~~~---------------------~~~~~Il~~n~--------- 36 (137)
++|||+|.+... .|++|+.++|... .+..||+++|.
T Consensus 141 l~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~ 220 (376)
T 1um8_A 141 VFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKK 220 (376)
T ss_dssp EEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTT
T ss_pred EEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHH
Confidence 589999999888 8999999999541 45567777762
Q ss_pred --------------------------------CCCc-hhhhhcc-eeeEecCCCHHHHHHHHHH----HHH---------
Q 042716 37 --------------------------------VSKL-QPIKSLC-TVIQLLPPSKQEIVEVLEF----IAE--------- 69 (137)
Q Consensus 37 --------------------------------~~~i-~~l~SRc-~~i~~~~~~~~~i~~~l~~----i~~--------- 69 (137)
...+ ++|++|| .++.|++++.+++..++.. +.+
T Consensus 221 R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~ 300 (376)
T 1um8_A 221 RTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMD 300 (376)
T ss_dssp SCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTT
T ss_pred HhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 1136 8999999 8899999999999988851 211
Q ss_pred HcCCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHh
Q 042716 70 QEGIQLPHQLAEKIADNSK---NNLRQAIRSFEASRQ 103 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~---gd~R~aln~L~~~~~ 103 (137)
..++.++++++.++++++. |++|.+.+.++.+..
T Consensus 301 ~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 301 EVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp TCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred CceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 1246789999999999866 999999999997764
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.93 E-value=1.5e-09 Score=81.18 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=74.2
Q ss_pred CcccccCcC----------CHHHHHHHHHHHHhc---cCCceEEEEeCCCCCc-h-hhhhc-ceeeEecCCCH-HHHHHH
Q 042716 1 IILCEADKL----------STDALLYMRWLLERY---KGLNKVFFCCSDVSKL-Q-PIKSL-CTVIQLLPPSK-QEIVEV 63 (137)
Q Consensus 1 iiiDEid~l----------~~~~~~~L~~~le~~---~~~~~~Il~~n~~~~i-~-~l~SR-c~~i~~~~~~~-~~i~~~ 63 (137)
++|||+|.| ....++.|...++.. ...+.+|.+||.+..+ + .+++| |..+.|++++. +++...
T Consensus 128 l~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i 207 (272)
T 1d2n_A 128 VVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEA 207 (272)
T ss_dssp EEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHH
T ss_pred EEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHH
Confidence 589999998 455567777777642 2234466677777667 5 68999 68899988888 665555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC-----cHHHHHHHHHHHHhc
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADNSKN-----NLRQAIRSFEASRQM 104 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~~~g-----d~R~aln~L~~~~~~ 104 (137)
+.. .+ .++++++..+++.+.| |+|.++|+++.+...
T Consensus 208 ~~~----~~-~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 208 LEL----LG-NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp HHH----HT-CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred HHh----cC-CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 543 32 5689999999999988 999999999988743
No 44
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.93 E-value=4.8e-09 Score=81.87 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=80.3
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHHhc----cCCceEEEEeCCCCCc-hhhhhcce-eeEecCCCHHHHHHH
Q 042716 1 IILCEADKLST-----------DALLYMRWLLERY----KGLNKVFFCCSDVSKL-QPIKSLCT-VIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le~~----~~~~~~Il~~n~~~~i-~~l~SRc~-~i~~~~~~~~~i~~~ 63 (137)
|||||+|.|.. ..++.|+..++.. ..++.+|.+||.+..+ +++++||. .+.++.|+.++...+
T Consensus 180 l~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~i 259 (357)
T 3d8b_A 180 IFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQI 259 (357)
T ss_dssp EEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHH
T ss_pred EEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHH
Confidence 58999998832 3466777777742 3456788889998889 99999995 789999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHH
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADNSKN-NLRQAIRSFEAS 101 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~~~g-d~R~aln~L~~~ 101 (137)
+...+.++++.++++.+..++..+.| ..+.+-++++..
T Consensus 260 l~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 260 VINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREA 298 (357)
T ss_dssp HHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999988 444444444443
No 45
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.92 E-value=6.8e-09 Score=79.75 Aligned_cols=100 Identities=10% Similarity=-0.000 Sum_probs=81.2
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHHhc---cCCceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHHHHHH
Q 042716 1 IILCEADKLST-----------DALLYMRWLLERY---KGLNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le~~---~~~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i~~~l 64 (137)
|||||+|.|.. ..++.|+..++.. ..++.+|.+||.+..+ +++++|| ..+.|+.|+.++...++
T Consensus 114 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il 193 (322)
T 3eie_A 114 IFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF 193 (322)
T ss_dssp EEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHH
T ss_pred EEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHH
Confidence 58999999854 3367888888753 3456688888988899 9999999 67999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHH
Q 042716 65 EFIAEQEGIQLPHQLAEKIADNSKN-NLRQAIRSFEA 100 (137)
Q Consensus 65 ~~i~~~egi~i~~~~l~~i~~~~~g-d~R~aln~L~~ 100 (137)
+..+.+.+..+++..+..++..+.| ..+.+-++++.
T Consensus 194 ~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 194 EINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp HHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999988888999999999999887 44444444443
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.89 E-value=5.3e-09 Score=84.00 Aligned_cols=101 Identities=10% Similarity=-0.003 Sum_probs=81.2
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHhc---cCCceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHHHHHH
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLERY---KGLNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~~---~~~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i~~~l 64 (137)
|||||+|.|. ...++.|+..++.. ..++.||.+||.+..+ +++++|| ..+.|+.|+.++...++
T Consensus 231 l~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il 310 (444)
T 2zan_A 231 IFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMF 310 (444)
T ss_dssp EEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred EEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHH
Confidence 5899999983 34567777777653 4567789999999899 9999999 58999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHH
Q 042716 65 EFIAEQEGIQLPHQLAEKIADNSKN-NLRQAIRSFEAS 101 (137)
Q Consensus 65 ~~i~~~egi~i~~~~l~~i~~~~~g-d~R~aln~L~~~ 101 (137)
...+.+.+..+++..+..|+..+.| +.+.+-++++.+
T Consensus 311 ~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 311 RLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp HHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9988888888899999999999988 444444444443
No 47
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.85 E-value=2.6e-08 Score=76.74 Aligned_cols=100 Identities=10% Similarity=-0.018 Sum_probs=79.6
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHhc---cCCceEEEEeCCCCCc-hhhhhcc-eeeEecCCCHHHHHHHH
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLERY---KGLNKVFFCCSDVSKL-QPIKSLC-TVIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~~---~~~~~~Il~~n~~~~i-~~l~SRc-~~i~~~~~~~~~i~~~l 64 (137)
|||||+|.+. ....+.|+..++.. ..++.+|.+||.+..+ +++++|| ..+.++.|+.++...++
T Consensus 109 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il 188 (322)
T 1xwi_A 109 IFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMF 188 (322)
T ss_dssp EEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred EEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHH
Confidence 5899999982 23466777777753 3456788889999999 9999999 78999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCc-HHHHHHHHHH
Q 042716 65 EFIAEQEGIQLPHQLAEKIADNSKNN-LRQAIRSFEA 100 (137)
Q Consensus 65 ~~i~~~egi~i~~~~l~~i~~~~~gd-~R~aln~L~~ 100 (137)
+..+.+.+..+++..+..+++.+.|- .+.+-++++.
T Consensus 189 ~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 189 KLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp HHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99888888888999999999998774 4444444443
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.84 E-value=4e-09 Score=90.64 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=85.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCC--------------------------CCCc-hh
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSD--------------------------VSKL-QP 42 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~--------------------------~~~i-~~ 42 (137)
+||||+|.++.+.++.|+.++++.. .++.||++||. ...+ ++
T Consensus 664 l~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~ 743 (854)
T 1qvr_A 664 ILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPE 743 (854)
T ss_dssp EEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHH
T ss_pred EEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHH
Confidence 5899999999999999999999653 35669999996 2346 88
Q ss_pred hhhcc-eeeEecCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHh
Q 042716 43 IKSLC-TVIQLLPPSKQEIVEVLEFIAEQ---------EGIQLPHQLAEKIADNSK---NNLRQAIRSFEASRQ 103 (137)
Q Consensus 43 l~SRc-~~i~~~~~~~~~i~~~l~~i~~~---------egi~i~~~~l~~i~~~~~---gd~R~aln~L~~~~~ 103 (137)
|++|| .++.|.||+.+++..++...+.+ .++.++++++..+++++. |++|.+.+.++....
T Consensus 744 l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 744 FLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 99999 78999999999998888765542 135789999999999865 999999999887654
No 49
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.79 E-value=1.2e-07 Score=69.74 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=73.7
Q ss_pred CcccccCcCC------------HHHHHHHHHHHHhc-----cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHH
Q 042716 1 IILCEADKLS------------TDALLYMRWLLERY-----KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQE 59 (137)
Q Consensus 1 iiiDEid~l~------------~~~~~~L~~~le~~-----~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~ 59 (137)
++|||+|.+. ...+..|..+++.. ..++.+|.+||.+..+ +++++ |+ ..+.|+.|+.++
T Consensus 102 l~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~ 181 (262)
T 2qz4_A 102 VYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181 (262)
T ss_dssp EEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHH
T ss_pred EEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHH
Confidence 5899999993 33455555555542 2356788888888889 99998 98 789999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCc-HHHHHHHHHHHHh
Q 042716 60 IVEVLEFIAEQEGIQLPHQL-AEKIADNSKNN-LRQAIRSFEASRQ 103 (137)
Q Consensus 60 i~~~l~~i~~~egi~i~~~~-l~~i~~~~~gd-~R~aln~L~~~~~ 103 (137)
...+++..+.+.++..+.+. ...++..+.|- .|.+.++++.+..
T Consensus 182 r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~ 227 (262)
T 2qz4_A 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAAL 227 (262)
T ss_dssp HHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 99999999999999888764 47788887764 4566666665553
No 50
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.76 E-value=3.8e-08 Score=77.31 Aligned_cols=105 Identities=17% Similarity=0.211 Sum_probs=82.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhccee--eEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCTV--IQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~~--i~~~~~~~-- 57 (137)
+||||+|.|+...|..|++++++.. .++++|.+||.. ... ++|.+|+.+ +.++|+.+
T Consensus 226 lfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~ 305 (368)
T 3dzd_A 226 LFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERG 305 (368)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGST
T ss_pred EEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhch
Confidence 5899999999999999999999632 257799999866 235 789999854 66888877
Q ss_pred HHHHHHHHHH----HHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhcC
Q 042716 58 QEIVEVLEFI----AEQEG---IQLPHQLAEKIADNS-KNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 58 ~~i~~~l~~i----~~~eg---i~i~~~~l~~i~~~~-~gd~R~aln~L~~~~~~~ 105 (137)
+++...+... +.+.| ..++++++..+..+. +||+|.+.|.++.+....
T Consensus 306 ~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 306 KDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 6766555443 44444 458999999999986 999999999999887654
No 51
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.74 E-value=4.9e-08 Score=73.05 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=73.8
Q ss_pred CcccccCcC-----------CHHHHHHHHHHHHhc-----cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKL-----------STDALLYMRWLLERY-----KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l-----------~~~~~~~L~~~le~~-----~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
++|||+|.+ ....+..|..+++.. ..++.+|++||.+..+ +++++ |+ ..+.|++|+.++.
T Consensus 114 l~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r 193 (285)
T 3h4m_A 114 IFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGR 193 (285)
T ss_dssp EEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHH
T ss_pred EEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHH
Confidence 589999998 556677887777653 3456688888988889 99998 87 5899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSKN----NLRQAIRSFEAS 101 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~g----d~R~aln~L~~~ 101 (137)
..+++..+...++.- +..+..++..+.| |++.+++.....
T Consensus 194 ~~il~~~~~~~~~~~-~~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 237 (285)
T 3h4m_A 194 LEILKIHTRKMNLAE-DVNLEEIAKMTEGCVGAELKAICTEAGMN 237 (285)
T ss_dssp HHHHHHHHTTSCBCT-TCCHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC-cCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 999998877665542 2246777777766 555554444433
No 52
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.66 E-value=2.3e-08 Score=83.09 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=77.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc---------------------cCCceEEEEeCCC--CCc-hhhhhcc----eeeEe
Q 042716 1 IILCEADKLSTDALLYMRWLLERY---------------------KGLNKVFFCCSDV--SKL-QPIKSLC----TVIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~---------------------~~~~~~Il~~n~~--~~i-~~l~SRc----~~i~~ 52 (137)
+||||+|.|++..|+.|+++|++. +.++++|++||.. ..+ ++|++|| ..+.|
T Consensus 205 L~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l 284 (604)
T 3k1j_A 205 LFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYM 284 (604)
T ss_dssp EEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHHHSEEEEC
T ss_pred EEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhccceEeec
Confidence 589999999999999999999943 2356699999876 568 9999999 45666
Q ss_pred cCC---CHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHc---CC-------cHHHHHHHHHHHH
Q 042716 53 LPP---SKQEIVEVLEFIAEQEG-----IQLPHQLAEKIADNS---KN-------NLRQAIRSFEASR 102 (137)
Q Consensus 53 ~~~---~~~~i~~~l~~i~~~eg-----i~i~~~~l~~i~~~~---~g-------d~R~aln~L~~~~ 102 (137)
+.. ..+.+..++..++++.+ ..++++++..+++++ .| ++|.+.++++.+.
T Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~ 352 (604)
T 3k1j_A 285 RTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAG 352 (604)
T ss_dssp CSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHH
Confidence 433 34456666655554332 578999999999876 56 5999999998655
No 53
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.55 E-value=6e-08 Score=83.39 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=73.8
Q ss_pred CcccccCcCC--------HHHHHHHHHHHHhccCCceEEEEeCCCC----Cc-hhhhhcceeeEecCCCHHHHHHHHHHH
Q 042716 1 IILCEADKLS--------TDALLYMRWLLERYKGLNKVFFCCSDVS----KL-QPIKSLCTVIQLLPPSKQEIVEVLEFI 67 (137)
Q Consensus 1 iiiDEid~l~--------~~~~~~L~~~le~~~~~~~~Il~~n~~~----~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i 67 (137)
+||||+|.|. ..+++.|+..++ .+...+|.+||... .+ ++|++||..+.|++|+.++...+|+.+
T Consensus 267 L~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 267 LFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp EEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred EEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 4789999997 455778899998 56778999988764 36 999999999999999999999999876
Q ss_pred HH----HcCCCCCHHHHHHHHHHcCCc------HHHHHHHHHHHH
Q 042716 68 AE----QEGIQLPHQLAEKIADNSKNN------LRQAIRSFEASR 102 (137)
Q Consensus 68 ~~----~egi~i~~~~l~~i~~~~~gd------~R~aln~L~~~~ 102 (137)
+. ..++.++++++..++..+.|. +++++.+++.+.
T Consensus 345 ~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~ 389 (854)
T 1qvr_A 345 KEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAA 389 (854)
T ss_dssp HHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHH
T ss_pred hhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHH
Confidence 65 458899999999999877443 788888887655
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.49 E-value=4.2e-08 Score=79.21 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHHH----cCCCCCHH
Q 042716 9 LSTDALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQ----EGIQLPHQ 78 (137)
Q Consensus 9 l~~~~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~----egi~i~~~ 78 (137)
.+..+++.|+..++ .+..++|.+||... .+ +++++||..+.|++|+.++...+|..++.+ .|+.++++
T Consensus 275 ~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~ 352 (468)
T 3pxg_A 275 AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDD 352 (468)
T ss_dssp C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHH
T ss_pred CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 45667888999998 66788999998886 47 999999999999999999999999988776 78999999
Q ss_pred HHHHHHHHcCCc------HHHHHHHHHHHHh
Q 042716 79 LAEKIADNSKNN------LRQAIRSFEASRQ 103 (137)
Q Consensus 79 ~l~~i~~~~~gd------~R~aln~L~~~~~ 103 (137)
++..++..+.+. +++++++|+....
T Consensus 353 al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 353 AIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp HHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 999999876543 4579988876653
No 55
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.46 E-value=3.2e-07 Score=71.44 Aligned_cols=102 Identities=22% Similarity=0.188 Sum_probs=77.2
Q ss_pred CcccccCcCCH------HHHHHHHHHHHhcc-----CCceEEEEeCCCCCc-------hhhhhcc-eeeEecCCCHHHHH
Q 042716 1 IILCEADKLST------DALLYMRWLLERYK-----GLNKVFFCCSDVSKL-------QPIKSLC-TVIQLLPPSKQEIV 61 (137)
Q Consensus 1 iiiDEid~l~~------~~~~~L~~~le~~~-----~~~~~Il~~n~~~~i-------~~l~SRc-~~i~~~~~~~~~i~ 61 (137)
|+|||+|.+.. +....|.+.+++.+ .+..+|++++.+.-. +.+.+|. ..+.|++++.+++.
T Consensus 142 lvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~ 221 (412)
T 1w5s_A 142 VILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELY 221 (412)
T ss_dssp EEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHH
T ss_pred EEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHH
Confidence 58999999853 56667777787654 455588888765421 3344553 34999999999999
Q ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHcC------CcHHHHHHHHHHHH
Q 042716 62 EVLEFIAEQEGI--QLPHQLAEKIADNSK------NNLRQAIRSFEASR 102 (137)
Q Consensus 62 ~~l~~i~~~egi--~i~~~~l~~i~~~~~------gd~R~aln~L~~~~ 102 (137)
..+...+...+. .++++++..++..+. |++|.++++++.+.
T Consensus 222 ~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~ 270 (412)
T 1w5s_A 222 TILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMAC 270 (412)
T ss_dssp HHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence 999887765433 578999999999999 99999999987643
No 56
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.43 E-value=2.2e-07 Score=70.30 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=61.2
Q ss_pred CcccccCcCCHHHHHHHHHHHH--------hcc-----CCceEEEEeCCC-----------CCc-hhhhhcceeeEec--
Q 042716 1 IILCEADKLSTDALLYMRWLLE--------RYK-----GLNKVFFCCSDV-----------SKL-QPIKSLCTVIQLL-- 53 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le--------~~~-----~~~~~Il~~n~~-----------~~i-~~l~SRc~~i~~~-- 53 (137)
|+++|-..+..++++.++.+++ ++. ..+|+|++||.. ... ++|+|||.+|+|.
T Consensus 151 i~l~Ee~~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~ 230 (267)
T 1u0j_A 151 VIWWEEGKMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRR 230 (267)
T ss_dssp EEEECSCCEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSC
T ss_pred EEEeccccchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCc
Confidence 3566777777888899999998 655 788999999982 245 8999999999999
Q ss_pred ------CCCHHHHHHHHHHHHHHcCCCCCH
Q 042716 54 ------PPSKQEIVEVLEFIAEQEGIQLPH 77 (137)
Q Consensus 54 ------~~~~~~i~~~l~~i~~~egi~i~~ 77 (137)
+++++++..++.++ +.++.++++
T Consensus 231 ~p~~~~~lt~~~~~~f~~w~-~~~~~~~~~ 259 (267)
T 1u0j_A 231 LDHDFGKVTKQEVKDFFRWA-KDHVVEVEH 259 (267)
T ss_dssp CCTTSCCCCHHHHHHHHHHH-HHTCCCCCC
T ss_pred CCcccCCCCHHHHHHHHHHH-HHcCCCCcc
Confidence 89999999999966 888887654
No 57
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.38 E-value=2.9e-07 Score=71.53 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=75.8
Q ss_pred CcccccCcCCHH--------------HHHHHHHHHHh---------------------ccCCceEEEEeCCC--------
Q 042716 1 IILCEADKLSTD--------------ALLYMRWLLER---------------------YKGLNKVFFCCSDV-------- 37 (137)
Q Consensus 1 iiiDEid~l~~~--------------~~~~L~~~le~---------------------~~~~~~~Il~~n~~-------- 37 (137)
+||||+|.+... .|+.|+.+||. ...|..||++++..
T Consensus 120 l~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~ 199 (363)
T 3hws_A 120 VYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISH 199 (363)
T ss_dssp EEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHH
T ss_pred EEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHH
Confidence 589999999866 89999999992 12455677777743
Q ss_pred --CC-----------------------------------c-hhhhhcce-eeEecCCCHHHHHHHHHH----HH------
Q 042716 38 --SK-----------------------------------L-QPIKSLCT-VIQLLPPSKQEIVEVLEF----IA------ 68 (137)
Q Consensus 38 --~~-----------------------------------i-~~l~SRc~-~i~~~~~~~~~i~~~l~~----i~------ 68 (137)
.+ + ++|.+|+- ++.|.+|+.+++.+++.. +.
T Consensus 200 ~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~ 279 (363)
T 3hws_A 200 RVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQAL 279 (363)
T ss_dssp HHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHH
T ss_pred hhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 7 89999995 566999999988777654 22
Q ss_pred -HHcC--CCCCHHHHHHHHHH---cCCcHHHHHHHHHHHHh
Q 042716 69 -EQEG--IQLPHQLAEKIADN---SKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 69 -~~eg--i~i~~~~l~~i~~~---~~gd~R~aln~L~~~~~ 103 (137)
...| +.++++++..+++. .+++.|.+-|.++....
T Consensus 280 ~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~ 320 (363)
T 3hws_A 280 FNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALL 320 (363)
T ss_dssp HHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred HHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHH
Confidence 2223 46899999999964 46777888888876654
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.35 E-value=3.7e-07 Score=77.26 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=76.8
Q ss_pred CcccccCcC---------CHHHHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCCHHHHHHHHH
Q 042716 1 IILCEADKL---------STDALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPSKQEIVEVLE 65 (137)
Q Consensus 1 iiiDEid~l---------~~~~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~~~~i~~~l~ 65 (137)
+||||+|.| ...+++.|...++ .+...+|.+||... .+ ++|++||..+.|.+|+.++....+.
T Consensus 282 L~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~ 359 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIIN 359 (758)
T ss_dssp EEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHH
T ss_pred EEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHH
Confidence 589999999 3344666777776 45677888888642 35 7899999999999999999999998
Q ss_pred HHHHH----cCCCCCHHHHHHHHHHcCC------cHHHHHHHHHHH
Q 042716 66 FIAEQ----EGIQLPHQLAEKIADNSKN------NLRQAIRSFEAS 101 (137)
Q Consensus 66 ~i~~~----egi~i~~~~l~~i~~~~~g------d~R~aln~L~~~ 101 (137)
.++.. .++.++++++..++..+.| .+..++.+++.+
T Consensus 360 ~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a 405 (758)
T 1r6b_X 360 GLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEA 405 (758)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHH
Confidence 87765 7899999999999887654 344667666544
No 59
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.35 E-value=1.3e-06 Score=64.42 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=74.8
Q ss_pred CcccccCcCCH--------------HHHHHHHHHHHhc--cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLST--------------DALLYMRWLLERY--KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~--------------~~~~~L~~~le~~--~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
++|||+|.+.. ...+.++..++.. ..+..+|.+||.+..+ +.+++ |+ ..+.|+.|+.++.
T Consensus 108 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r 187 (257)
T 1lv7_A 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187 (257)
T ss_dssp EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred ehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHH
Confidence 47899988743 3355666777643 3345688888998889 88887 76 5789999999998
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHcCC-cHHHHHHHHHHHHh
Q 042716 61 VEVLEFIAEQEGIQLPHQL-AEKIADNSKN-NLRQAIRSFEASRQ 103 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~-l~~i~~~~~g-d~R~aln~L~~~~~ 103 (137)
..+++..+++. .+++++ ...++..+.| +.|.+.++++.+..
T Consensus 188 ~~il~~~~~~~--~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~ 230 (257)
T 1lv7_A 188 EQILKVHMRRV--PLAPDIDAAIIARGTPGFSGADLANLVNEAAL 230 (257)
T ss_dssp HHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCccccHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 88888776554 344333 6778888999 89988888876654
No 60
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.31 E-value=5.1e-06 Score=65.47 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=80.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-----------CCceEEEEeCCC-------CCc-hhhhhcce--eeEecCCCH--
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-----------GLNKVFFCCSDV-------SKL-QPIKSLCT--VIQLLPPSK-- 57 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-----------~~~~~Il~~n~~-------~~i-~~l~SRc~--~i~~~~~~~-- 57 (137)
+||||++.|+.+.|..|++++++.. .++++|.+||.. ... ++|..|.. .+.++|+..
T Consensus 235 lfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~ 314 (387)
T 1ny5_A 235 LFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERK 314 (387)
T ss_dssp EEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCH
T ss_pred EEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhcc
Confidence 5899999999999999999999732 367899999965 346 78888874 466666654
Q ss_pred HHHHHHHH----HHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHHhcCC
Q 042716 58 QEIVEVLE----FIAEQEGI---QLPHQLAEKIADNS-KNNLRQAIRSFEASRQMNY 106 (137)
Q Consensus 58 ~~i~~~l~----~i~~~egi---~i~~~~l~~i~~~~-~gd~R~aln~L~~~~~~~~ 106 (137)
+++...+. +.+.+.|. .++++++..+..+. .||+|.+-|.++.+.....
T Consensus 315 ~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~ 371 (387)
T 1ny5_A 315 EDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE 371 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 56655444 34444453 37899999999774 9999999999998876543
No 61
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.30 E-value=9.2e-07 Score=71.26 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=74.9
Q ss_pred CcccccCcCCH------------HHHHHHHHHHHhc----------cCCceEEEEe----CCCCCc-hhhhhccee-eEe
Q 042716 1 IILCEADKLST------------DALLYMRWLLERY----------KGLNKVFFCC----SDVSKL-QPIKSLCTV-IQL 52 (137)
Q Consensus 1 iiiDEid~l~~------------~~~~~L~~~le~~----------~~~~~~Il~~----n~~~~i-~~l~SRc~~-i~~ 52 (137)
+++||+|.++. +.|++|++++|.. ..+..||+++ +++..+ |.|++|+.+ +.|
T Consensus 254 l~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l 333 (444)
T 1g41_A 254 VFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 333 (444)
T ss_dssp EEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEEC
T ss_pred eeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeC
Confidence 47899999963 2589999999941 2345577776 234446 999999976 999
Q ss_pred cCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHH--------cCCcHHHHHHHHHHHH
Q 042716 53 LPPSKQEIVEVLE-----------FIAEQEGI--QLPHQLAEKIADN--------SKNNLRQAIRSFEASR 102 (137)
Q Consensus 53 ~~~~~~~i~~~l~-----------~i~~~egi--~i~~~~l~~i~~~--------~~gd~R~aln~L~~~~ 102 (137)
++++.++...++. .....+|+ .++++++..|++. -+...|.+-+.++.+.
T Consensus 334 ~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~ 404 (444)
T 1g41_A 334 TALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 404 (444)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHH
Confidence 9999999998883 12223444 5889999999986 3577888777777554
No 62
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.29 E-value=1.8e-06 Score=65.57 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=65.0
Q ss_pred CcccccCcCCHH--------------HHHHHHHHHHhc--cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLSTD--------------ALLYMRWLLERY--KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~--------------~~~~L~~~le~~--~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
+||||+|.|... .++.|+..++.. ..++.+|.+||.+..+ +++++ |+ ..+.|+.|+.++.
T Consensus 112 l~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r 191 (301)
T 3cf0_A 112 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 191 (301)
T ss_dssp EEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred EEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHH
Confidence 589999988654 367888888743 3456788899999889 88888 88 5899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcC
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSK 88 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~ 88 (137)
..+++..+++.++.- +-.+..++..+.
T Consensus 192 ~~il~~~l~~~~~~~-~~~~~~la~~~~ 218 (301)
T 3cf0_A 192 VAILKANLRKSPVAK-DVDLEFLAKMTN 218 (301)
T ss_dssp HHHHHHHHTTSCBCS-SCCHHHHHHTCS
T ss_pred HHHHHHHHccCCCCc-cchHHHHHHHcC
Confidence 999998887776531 112445555443
No 63
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.29 E-value=2e-07 Score=64.47 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=51.1
Q ss_pred CcccccCcCCHH--------HHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCCHHHHHHHH
Q 042716 1 IILCEADKLSTD--------ALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~~~--------~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~~~~i~~~l 64 (137)
++|||+|.+... .++.|+..++ ..+..+|+++|... .+ ++++|||..+.|.+|+.++...+|
T Consensus 119 l~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 119 LFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred EEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 589999999633 3788888887 56788999998875 68 999999999999999999876654
No 64
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.25 E-value=2.1e-06 Score=71.30 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=69.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-------------CCceEEEEeCCCC-------------Cc-hhhhhcc-eeeEe
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-------------GLNKVFFCCSDVS-------------KL-QPIKSLC-TVIQL 52 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-------------~~~~~Il~~n~~~-------------~i-~~l~SRc-~~i~~ 52 (137)
++|||+|.|++..|++|+..||+.. .++.+|.++|... .+ ++|+||+ .++.+
T Consensus 395 l~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~ 474 (595)
T 3f9v_A 395 AVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFIL 474 (595)
T ss_dssp ECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEE
T ss_pred EEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEe
Confidence 5899999999999999999999632 3456888888764 78 9999999 66777
Q ss_pred cCCCHHHHHHHHHHHHHHc-------------------------CCCCCHHHHHHHHHH---------------cCCcHH
Q 042716 53 LPPSKQEIVEVLEFIAEQE-------------------------GIQLPHQLAEKIADN---------------SKNNLR 92 (137)
Q Consensus 53 ~~~~~~~i~~~l~~i~~~e-------------------------gi~i~~~~l~~i~~~---------------~~gd~R 92 (137)
.++++.+-...+.++.... .-.+++++.+.+.+. ..+++|
T Consensus 475 ~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R 554 (595)
T 3f9v_A 475 KDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPR 554 (595)
T ss_dssp CCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTT
T ss_pred CCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHH
Confidence 6766655333333333221 125566666666665 466777
Q ss_pred HHHHHHHHH
Q 042716 93 QAIRSFEAS 101 (137)
Q Consensus 93 ~aln~L~~~ 101 (137)
.+.+++..+
T Consensus 555 ~l~~lirla 563 (595)
T 3f9v_A 555 QLEALIRIS 563 (595)
T ss_dssp TTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777644
No 65
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.22 E-value=1.3e-05 Score=60.73 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=76.9
Q ss_pred CcccccCcCCH-------HHHHHHHHHHHhccCCceEEEEeCCCC---------Cc-hhhhhcc-eeeEecCCCHHHHHH
Q 042716 1 IILCEADKLST-------DALLYMRWLLERYKGLNKVFFCCSDVS---------KL-QPIKSLC-TVIQLLPPSKQEIVE 62 (137)
Q Consensus 1 iiiDEid~l~~-------~~~~~L~~~le~~~~~~~~Il~~n~~~---------~i-~~l~SRc-~~i~~~~~~~~~i~~ 62 (137)
|+|||+|.+.. +....|...++.. .++.+|+++.... .. .++..|. ..+++.+++.++...
T Consensus 132 lvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~ 210 (350)
T 2qen_A 132 VAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVE 210 (350)
T ss_dssp EEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHH
T ss_pred EEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHH
Confidence 58999999864 4566677777654 4778898886542 22 4566565 589999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 042716 63 VLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEA 100 (137)
Q Consensus 63 ~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~ 100 (137)
.+.......|..++++.+..+...++|.+..+..+...
T Consensus 211 ~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~~~~ 248 (350)
T 2qen_A 211 FLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVE 248 (350)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99888878888899999999999999999876555443
No 66
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.16 E-value=8.6e-06 Score=66.49 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=73.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc---------CCceE-EEEeCCCCC---c-hhhhhcce-eeEecCCCH-HHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK---------GLNKV-FFCCSDVSK---L-QPIKSLCT-VIQLLPPSK-QEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~---------~~~~~-Il~~n~~~~---i-~~l~SRc~-~i~~~~~~~-~~i~~~l 64 (137)
++|||++.+++..|++|+..|++.. ...+| |++||..+. . +++.+|+. .+.+++|+. ++...++
T Consensus 113 L~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL 192 (500)
T 3nbx_X 113 VFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSML 192 (500)
T ss_dssp EEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHH
T ss_pred eeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 5899999999999999999998531 22345 777776543 4 79999974 588888887 4555555
Q ss_pred HHHH-----------------------HHcCCCCCHHHHHHHHHHc----------CCcHHHHHHHHHHH
Q 042716 65 EFIA-----------------------EQEGIQLPHQLAEKIADNS----------KNNLRQAIRSFEAS 101 (137)
Q Consensus 65 ~~i~-----------------------~~egi~i~~~~l~~i~~~~----------~gd~R~aln~L~~~ 101 (137)
.... ...++.+++++++++++.. +.+.|.++.++..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A 262 (500)
T 3nbx_X 193 TSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLL 262 (500)
T ss_dssp TCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHH
T ss_pred hcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHH
Confidence 4321 2347889999999988776 55889877776644
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.16 E-value=1.2e-06 Score=74.25 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=72.1
Q ss_pred cccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHHH----c
Q 042716 2 ILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQ----E 71 (137)
Q Consensus 2 iiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~----e 71 (137)
||| .+..+++.|+..++ .+..++|.+||... .+ +++++||..+.|++|+.++...+|..++.+ .
T Consensus 272 fiD----~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~ 345 (758)
T 3pxi_A 272 FID----AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHH 345 (758)
T ss_dssp EEC----C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred EEc----CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 566 45567888999998 66788999999887 57 999999999999999999999999977765 7
Q ss_pred CCCCCHHHHHHHHHHcCC------cHHHHHHHHHHHH
Q 042716 72 GIQLPHQLAEKIADNSKN------NLRQAIRSFEASR 102 (137)
Q Consensus 72 gi~i~~~~l~~i~~~~~g------d~R~aln~L~~~~ 102 (137)
++.++++++..++..+.+ -++.++.++..+.
T Consensus 346 ~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~ 382 (758)
T 3pxi_A 346 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAG 382 (758)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHH
Confidence 889999999999887643 3467777776553
No 68
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.14 E-value=1.9e-06 Score=70.16 Aligned_cols=100 Identities=11% Similarity=0.128 Sum_probs=72.6
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHHhcc--CCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLST-----------DALLYMRWLLERYK--GLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le~~~--~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~~ 63 (137)
+||||+|.|.. ..++.|+..++... .++.+|.+||.+..+ +++++ |+ ..+.|+.|+.++...+
T Consensus 301 LfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~I 380 (489)
T 3hu3_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (489)
T ss_dssp EEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred EEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHH
Confidence 58999987754 56888999999644 356688888888889 99999 55 4799999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCc-HHHHHHHHHHH
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADNSKNN-LRQAIRSFEAS 101 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~~~gd-~R~aln~L~~~ 101 (137)
|+..++..++..+ ..+..++..+.|- .+.+-++++.+
T Consensus 381 L~~~~~~~~l~~~-~~l~~la~~t~g~s~~dL~~L~~~A 418 (489)
T 3hu3_A 381 LQIHTKNMKLADD-VDLEQVANETHGHVGADLAALCSEA 418 (489)
T ss_dssp HHHHTTTSCBCTT-CCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcch-hhHHHHHHHccCCcHHHHHHHHHHH
Confidence 9887766554422 2367778777763 33343443433
No 69
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.12 E-value=5.4e-06 Score=67.29 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=72.8
Q ss_pred CcccccCcCCH--------------HHHHHHHHHHHhc--cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLST--------------DALLYMRWLLERY--KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~--------------~~~~~L~~~le~~--~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+.. ..++.|+..++.. ..++.+|.+||.+..+ ++++. |+ ..+.|+.|+.++.
T Consensus 112 LfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R 191 (476)
T 2ce7_A 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191 (476)
T ss_dssp EEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred EEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHH
Confidence 58999999843 2356777777643 3456788888888888 88875 76 4899999999998
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHcCCcH-HHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQL-AEKIADNSKNNL-RQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~-l~~i~~~~~gd~-R~aln~L~~~~ 102 (137)
..+++..+++.+ +++++ +..++..+.|.. |.+.+++..+.
T Consensus 192 ~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~lv~~Aa 233 (476)
T 2ce7_A 192 KKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLENLVNEAA 233 (476)
T ss_dssp HHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 888887766543 33333 777899888866 66777766544
No 70
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.98 E-value=3.1e-07 Score=68.10 Aligned_cols=102 Identities=11% Similarity=0.067 Sum_probs=68.8
Q ss_pred CcccccCcCCHH---------------HHHHHHHHHHhccC---CceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHH
Q 042716 1 IILCEADKLSTD---------------ALLYMRWLLERYKG---LNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQ 58 (137)
Q Consensus 1 iiiDEid~l~~~---------------~~~~L~~~le~~~~---~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~ 58 (137)
++|||+|.|... .++.|+..++.+.. .+.+|.++|.+..+ +++++ |+ ..+.|+.|+.+
T Consensus 107 l~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~ 186 (268)
T 2r62_A 107 IFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186 (268)
T ss_dssp EEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTT
T ss_pred EEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHH
Confidence 589999999654 24556777765432 25577788888888 88988 54 67999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHh
Q 042716 59 EIVEVLEFIAEQEGIQLPHQLAEKIADNSKN-NLRQAIRSFEASRQ 103 (137)
Q Consensus 59 ~i~~~l~~i~~~egi~i~~~~l~~i~~~~~g-d~R~aln~L~~~~~ 103 (137)
+....++..++..++. ++..+..++..+.| ..|.+.++++.+..
T Consensus 187 ~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~ 231 (268)
T 2r62_A 187 GRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAAL 231 (268)
T ss_dssp THHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999998876544332 22225667776665 34555555555543
No 71
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.89 E-value=0.00014 Score=55.08 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=59.4
Q ss_pred CcccccCcCCH-------------HHHHHHHHHHHh-------------ccCCceEEEEeCCCCCc-hhhhh--cceeeE
Q 042716 1 IILCEADKLST-------------DALLYMRWLLER-------------YKGLNKVFFCCSDVSKL-QPIKS--LCTVIQ 51 (137)
Q Consensus 1 iiiDEid~l~~-------------~~~~~L~~~le~-------------~~~~~~~Il~~n~~~~i-~~l~S--Rc~~i~ 51 (137)
++|||+|.+.+ ..++.|+.+++. ...++.+|+|||.+..+ ++++. |+..+-
T Consensus 103 l~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i 182 (293)
T 3t15_A 103 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 182 (293)
T ss_dssp EEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEE
T ss_pred EEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeE
Confidence 57999999865 234788888762 23467799999999999 88884 664332
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCcH
Q 042716 52 LLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNS-KNNL 91 (137)
Q Consensus 52 ~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~-~gd~ 91 (137)
+ .|+.++...+++......++ +.+.+..+.... +.++
T Consensus 183 ~-~P~~~~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l 220 (293)
T 3t15_A 183 W-APTREDRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSI 220 (293)
T ss_dssp E-CCCHHHHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCH
T ss_pred e-CcCHHHHHHHHHHhccCCCC--CHHHHHHHhCCCCcccH
Confidence 3 46999999999988877655 566677766654 4455
No 72
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=5.2e-05 Score=60.41 Aligned_cols=95 Identities=16% Similarity=0.278 Sum_probs=67.4
Q ss_pred CcccccCcCCH-----------HH---HHHHHHHHHhcc--CCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLST-----------DA---LLYMRWLLERYK--GLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~-----------~~---~~~L~~~le~~~--~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+.. .. .+.|+.-|+... .+..+|.+||.+..| ++|+- |+ ..+.|+.|+.++.
T Consensus 245 IFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R 324 (405)
T 4b4t_J 245 IFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAAR 324 (405)
T ss_dssp EEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHH
Confidence 58999999842 12 344555565433 345588899999999 99985 77 6899999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----cHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQ-LAEKIADNSKN----NLRQAIRS 97 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~-~l~~i~~~~~g----d~R~aln~ 97 (137)
..+++..+++.++ +++ .+..+++.+.| |++.+.+-
T Consensus 325 ~~Il~~~~~~~~l--~~dvdl~~lA~~t~G~SGADi~~l~~e 364 (405)
T 4b4t_J 325 AEILRIHSRKMNL--TRGINLRKVAEKMNGCSGADVKGVCTE 364 (405)
T ss_dssp HHHHHHHHTTSBC--CSSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC--CccCCHHHHHHHCCCCCHHHHHHHHHH
Confidence 9999877765544 322 37788887665 66655543
No 73
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.86 E-value=3.7e-06 Score=58.02 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=44.8
Q ss_pred CcccccCcCC---------HHHHHHHHHHHHhccCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCC
Q 042716 1 IILCEADKLS---------TDALLYMRWLLERYKGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPS 56 (137)
Q Consensus 1 iiiDEid~l~---------~~~~~~L~~~le~~~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~ 56 (137)
++|||+|.+. ...++.|...++ ..++.+|+++|... .+ ++++|||..+.+.+|+
T Consensus 119 l~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~--~~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 119 MFIDEIHTVVGAGAVAEGALDAGNILKPMLA--RGELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp EEETTGGGGSSSSSSCTTSCCTHHHHHHHHH--TTCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred EEEeCHHHhcccccccccchHHHHHHHHHHh--cCCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 5899999997 455778888887 56788999998775 57 9999999999998875
No 74
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.77 E-value=0.00012 Score=55.38 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=73.6
Q ss_pred CcccccCcCCH----HHHHHHHHHHHhccCCceEEEEeCCCC---------Cc-hhhhhcc-eeeEecCCCHHHHHHHHH
Q 042716 1 IILCEADKLST----DALLYMRWLLERYKGLNKVFFCCSDVS---------KL-QPIKSLC-TVIQLLPPSKQEIVEVLE 65 (137)
Q Consensus 1 iiiDEid~l~~----~~~~~L~~~le~~~~~~~~Il~~n~~~---------~i-~~l~SRc-~~i~~~~~~~~~i~~~l~ 65 (137)
++|||+|.+.. +....|....+.. .+..+|++++... .. .++..|. ..+.+.+++.+++...+.
T Consensus 141 lvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~ 219 (357)
T 2fna_A 141 IVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLR 219 (357)
T ss_dssp EEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHH
T ss_pred EEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHH
Confidence 58999999864 3355666666653 3678999987642 22 3566675 689999999999999998
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 66 FIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 66 ~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
......|...++. ..+...++|.+..+..+...+
T Consensus 220 ~~~~~~~~~~~~~--~~i~~~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 220 RGFQEADIDFKDY--EVVYEKIGGIPGWLTYFGFIY 253 (357)
T ss_dssp HHHHHHTCCCCCH--HHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcH--HHHHHHhCCCHHHHHHHHHHH
Confidence 8777778777654 889999999998876665544
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.73 E-value=0.00013 Score=54.32 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=67.2
Q ss_pred CcccccCcCC-----------HHHHHHHHHHHHhccC----C-ceEEEEeCCCCCc-hhhhhcc---eeeEecCCCHHHH
Q 042716 1 IILCEADKLS-----------TDALLYMRWLLERYKG----L-NKVFFCCSDVSKL-QPIKSLC---TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~-----------~~~~~~L~~~le~~~~----~-~~~Il~~n~~~~i-~~l~SRc---~~i~~~~~~~~~i 60 (137)
+++||+|.+. ...+..+...+.+..+ . ..++.++|.+..+ +++++|+ ..+.|+.|+.++.
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 4789998762 2234444555544332 2 2355566777778 8998844 5799999999999
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHcCCcH-HHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQL-AEKIADNSKNNL-RQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~-l~~i~~~~~gd~-R~aln~L~~~~ 102 (137)
..+++..++ +..+++++ +..++..+.|.. |.+.++++.+.
T Consensus 216 ~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~ 257 (278)
T 1iy2_A 216 EQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAA 257 (278)
T ss_dssp HHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 998887653 45565554 788999998866 66666666554
No 76
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.72 E-value=9e-05 Score=54.38 Aligned_cols=100 Identities=12% Similarity=0.146 Sum_probs=65.6
Q ss_pred CcccccCcCCH-----------HH---HHHHHHHHHhccC-Cc-eEEEEeCCCCCc-hhhhhcc---eeeEecCCCHHHH
Q 042716 1 IILCEADKLST-----------DA---LLYMRWLLERYKG-LN-KVFFCCSDVSKL-QPIKSLC---TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~-----------~~---~~~L~~~le~~~~-~~-~~Il~~n~~~~i-~~l~SRc---~~i~~~~~~~~~i 60 (137)
+++||+|.+.. .. .+.++..++.... .. .++.++|.+..+ +++++|+ ..+.|+.|+.++.
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 47899987731 11 3344444443222 22 344556777678 9999854 5799999999999
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHcCCcH-HHHHHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQL-AEKIADNSKNNL-RQAIRSFEASR 102 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~-l~~i~~~~~gd~-R~aln~L~~~~ 102 (137)
..+++..+ +++.+++++ +..++..+.|.. |.+.++++.+.
T Consensus 192 ~~il~~~~--~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~ 233 (254)
T 1ixz_A 192 EQILRIHA--RGKPLAEDVDLALLAKRTPGFVGADLENLLNEAA 233 (254)
T ss_dssp HHHHHHHH--TTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99888665 455565554 788999988855 66666666544
No 77
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.66 E-value=4e-05 Score=51.96 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=45.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCC-------Cc-hhhhhcce--eeEecCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVS-------KL-QPIKSLCT--VIQLLPP 55 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~-------~i-~~l~SRc~--~i~~~~~ 55 (137)
++|||+|.|+...|..|+..++..+.++++|++||.+. .+ +.|..|+. .+.++|+
T Consensus 80 l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 80 LVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred EEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 58999999999999999999988788899999999762 46 78888864 4555554
No 78
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00018 Score=57.83 Aligned_cols=95 Identities=12% Similarity=0.194 Sum_probs=67.6
Q ss_pred CcccccCcCCH-----------H---HHHHHHHHHHhccC--CceEEEEeCCCCCc-hhhhhc--c-eeeEecCCCHHHH
Q 042716 1 IILCEADKLST-----------D---ALLYMRWLLERYKG--LNKVFFCCSDVSKL-QPIKSL--C-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~-----------~---~~~~L~~~le~~~~--~~~~Il~~n~~~~i-~~l~SR--c-~~i~~~~~~~~~i 60 (137)
|||||+|.+.. . ..+.|+..|+.... ++.+|.+||.+..| ++|+.+ + ..+.|+.|+.++.
T Consensus 278 ifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R 357 (437)
T 4b4t_L 278 IFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357 (437)
T ss_dssp EEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHH
T ss_pred eeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHH
Confidence 58999998832 1 23456666764433 45689999999999 999765 4 5799999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADNSKN----NLRQAIR 96 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~~~g----d~R~aln 96 (137)
..+++..+.+..+. ++-.+..++..+.| |++.+.+
T Consensus 358 ~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 358 LEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp HHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHH
Confidence 99998877665432 12236778887665 6666554
No 79
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00055 Score=54.96 Aligned_cols=95 Identities=14% Similarity=0.239 Sum_probs=65.7
Q ss_pred CcccccCcCCH-----------HH---HHHHHHHHHhcc--CCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLST-----------DA---LLYMRWLLERYK--GLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~-----------~~---~~~L~~~le~~~--~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+.. .. ...|+..++-.. .++.+|.+||.+..| ++|+- |+ ..+.|+.|+.++.
T Consensus 279 IfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R 358 (437)
T 4b4t_I 279 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTK 358 (437)
T ss_dssp EEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHH
T ss_pred EEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHH
Confidence 58999998832 12 334455555333 345688899999999 99986 77 5799999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----cHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQ-LAEKIADNSKN----NLRQAIRS 97 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~-~l~~i~~~~~g----d~R~aln~ 97 (137)
..+++..+.+..+ +++ .+..++..+.| |++.+.+-
T Consensus 359 ~~Il~~~l~~~~l--~~dvdl~~LA~~T~GfSGADI~~l~~e 398 (437)
T 4b4t_I 359 KKILGIHTSKMNL--SEDVNLETLVTTKDDLSGADIQAMCTE 398 (437)
T ss_dssp HHHHHHHHTTSCB--CSCCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC--CCcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999877765543 332 36777877654 66655543
No 80
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00015 Score=58.29 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=66.3
Q ss_pred CcccccCcCCH-----------HH---HHHHHHHHHhccC--CceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLST-----------DA---LLYMRWLLERYKG--LNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~-----------~~---~~~L~~~le~~~~--~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+.. .. ...|+..|+.+.. ++.+|.+||.+..| ++|+. |+ ..+.|+.|+.++.
T Consensus 278 ifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R 357 (434)
T 4b4t_M 278 IFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSR 357 (434)
T ss_dssp EEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHH
T ss_pred EeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHH
Confidence 58999998721 12 3345666664433 34577889999999 99976 77 5799999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----cHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQ-LAEKIADNSKN----NLRQAIR 96 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~-~l~~i~~~~~g----d~R~aln 96 (137)
..+++..+++..+. ++ .+..++..+.| |++.+.+
T Consensus 358 ~~Il~~~~~~~~~~--~dvdl~~lA~~t~G~sGADi~~l~~ 396 (434)
T 4b4t_M 358 AQILQIHSRKMTTD--DDINWQELARSTDEFNGAQLKAVTV 396 (434)
T ss_dssp HHHHHHHHHHSCBC--SCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCC--CcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 99998887766442 22 26778877665 6666554
No 81
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.55 E-value=5.5e-05 Score=61.74 Aligned_cols=101 Identities=11% Similarity=0.109 Sum_probs=67.8
Q ss_pred CcccccCcCCH-----------HHH---HHHHHHHHhccC--CceEEEEeCCCCCc-hhhhhcc---eeeEecCCCHHHH
Q 042716 1 IILCEADKLST-----------DAL---LYMRWLLERYKG--LNKVFFCCSDVSKL-QPIKSLC---TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~---~~L~~~le~~~~--~~~~Il~~n~~~~i-~~l~SRc---~~i~~~~~~~~~i 60 (137)
++|||+|.+.. +.. +.|+..++.... ...++.++|.+..+ +++++++ ..+.|+.|+.++.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R 206 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 206 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHH
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHH
Confidence 47999998842 222 344444442222 23355556666668 8999865 4799999999998
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHcCCcH-HHHHHHHHHHHh
Q 042716 61 VEVLEFIAEQEGIQLPHQL-AEKIADNSKNNL-RQAIRSFEASRQ 103 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~-l~~i~~~~~gd~-R~aln~L~~~~~ 103 (137)
..+++..+ .++.+++++ +..++..+.|.. |.+-|++..+..
T Consensus 207 ~~IL~~~~--~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~ 249 (499)
T 2dhr_A 207 EQILRIHA--RGKPLAEDVDLALLAKRTPGFVGADLENLLNEAAL 249 (499)
T ss_dssp HHHHHHTT--SSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 88887654 355666554 788999998876 777777775543
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.54 E-value=7.1e-05 Score=50.65 Aligned_cols=55 Identities=13% Similarity=0.286 Sum_probs=43.3
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc-cCCceEEEEeCCCC-C----c-hhhhhcce--eeEecCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERY-KGLNKVFFCCSDVS-K----L-QPIKSLCT--VIQLLPP 55 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~-~~~~~~Il~~n~~~-~----i-~~l~SRc~--~i~~~~~ 55 (137)
++|||+|.++...|..|+..+++. +.++++|++||... . + +.|..|+. .+.++++
T Consensus 79 l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 79 LYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred EEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 589999999999999999999975 35688999998552 2 7 78888864 4555554
No 83
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00034 Score=56.62 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=65.2
Q ss_pred CcccccCcCCH-----------HH---HHHHHHHHHhcc--CCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLST-----------DA---LLYMRWLLERYK--GLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~-----------~~---~~~L~~~le~~~--~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+.. .. ...|+.-|+... .++.+|.+||.+..| ++|+- |+ ..+.|+.|+.++.
T Consensus 306 IfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R 385 (467)
T 4b4t_H 306 IFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGR 385 (467)
T ss_dssp EEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHH
T ss_pred EeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHH
Confidence 58999998842 12 334445554332 344578889999999 88875 87 6899999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----cHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQ-LAEKIADNSKN----NLRQAIR 96 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~-~l~~i~~~~~g----d~R~aln 96 (137)
..+++..+++..+ +++ .+..+++.+.| |++.+.+
T Consensus 386 ~~Ilk~~l~~~~l--~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 386 ANIFRIHSKSMSV--ERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp HHHHHHHHTTSCB--CSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCC--CCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 9999877765443 322 26778887765 6666554
No 84
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.37 E-value=0.00087 Score=54.60 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=60.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhc---------cCCceEEEEeCCCC-----------Cc-hhhhhcc-eeeEe-c----
Q 042716 1 IILCEADKLSTDALLYMRWLLERY---------KGLNKVFFCCSDVS-----------KL-QPIKSLC-TVIQL-L---- 53 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~---------~~~~~~Il~~n~~~-----------~i-~~l~SRc-~~i~~-~---- 53 (137)
+++||++.|.+..|.+|+..||+- +..+.+|.++|..+ .+ +++.||+ .++-. .
T Consensus 304 l~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~ 383 (506)
T 3f8t_A 304 LAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRP 383 (506)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC----
T ss_pred eehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCCh
Confidence 479999999999999999999963 45667777788653 78 9999998 43332 2
Q ss_pred ---------CCCHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHH
Q 042716 54 ---------PPSKQEIVEVLEFIAE--QEGIQLPHQLAEKIADN 86 (137)
Q Consensus 54 ---------~~~~~~i~~~l~~i~~--~egi~i~~~~l~~i~~~ 86 (137)
.++.+.+.+++.. ++ .-...+++++.++|.+.
T Consensus 384 e~d~e~~~~~ls~e~L~~yi~~-ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 384 GEPEEQDTEVPSYTLLRRYLLY-AIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp ----------CCHHHHHHHHHH-HHHHCSCCEECHHHHHHHHHH
T ss_pred hHhhcccCCCCCHHHHHHHHHH-HHhcCCCceeCHHHHHHHHHH
Confidence 2334455555544 44 22677889888777653
No 85
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00052 Score=54.99 Aligned_cols=94 Identities=13% Similarity=0.184 Sum_probs=64.7
Q ss_pred CcccccCcCCH-----------H---HHHHHHHHHHhcc--CCceEEEEeCCCCCc-hhhhh--cc-eeeEec-CCCHHH
Q 042716 1 IILCEADKLST-----------D---ALLYMRWLLERYK--GLNKVFFCCSDVSKL-QPIKS--LC-TVIQLL-PPSKQE 59 (137)
Q Consensus 1 iiiDEid~l~~-----------~---~~~~L~~~le~~~--~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~-~~~~~~ 59 (137)
+||||+|.+.. . ..+.|+..|+... .++.+|.+||.+..| ++|+- |+ ..+.|+ .|+.++
T Consensus 269 ifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~ 348 (428)
T 4b4t_K 269 IFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRE 348 (428)
T ss_dssp EEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHH
T ss_pred eechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHH
Confidence 57899997621 1 2455666676543 345688899999999 99986 66 468895 678888
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----cHHHHHH
Q 042716 60 IVEVLEFIAEQEGIQLPHQ-LAEKIADNSKN----NLRQAIR 96 (137)
Q Consensus 60 i~~~l~~i~~~egi~i~~~-~l~~i~~~~~g----d~R~aln 96 (137)
...+++..+.+.++ .++ .+..++..+.| |++.+.+
T Consensus 349 R~~Il~~~~~~~~l--~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 349 RRLIFGTIASKMSL--APEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp HHHHHHHHHHSSCB--CTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC--CcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 88888877766544 322 36778877655 6666554
No 86
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.80 E-value=0.00072 Score=46.21 Aligned_cols=48 Identities=8% Similarity=0.252 Sum_probs=37.1
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccC-Cce-EEEEeCCCCC-c---hhhhhcce
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKG-LNK-VFFCCSDVSK-L---QPIKSLCT 48 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~-~~~-~Il~~n~~~~-i---~~l~SRc~ 48 (137)
++|||++.+....+..|+.+++.... +.. +|++++.++. + ++|+||+.
T Consensus 87 LilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 87 LAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp EEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred EEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 48999999988889999999886433 344 8888886543 3 89999974
No 87
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.80 E-value=0.00094 Score=57.39 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=61.7
Q ss_pred CcccccCcCCHH-----------HHHHHHHHHHhccC--CceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLSTD-----------ALLYMRWLLERYKG--LNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~-----------~~~~L~~~le~~~~--~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~~ 63 (137)
|||||+|.+.+. ..+.|+..|+.... ++.+|.+||.+..| ++|+. |+ ..+.|+.|+.++...+
T Consensus 301 IfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~I 380 (806)
T 3cf2_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp EEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHH
T ss_pred EEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHH
Confidence 589999999532 25667777776543 44577888999999 99998 76 5799999999999888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADNSKN 89 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~~~g 89 (137)
|+..+++..+. ++-.+..++..+.|
T Consensus 381 L~~~l~~~~~~-~dvdl~~lA~~T~G 405 (806)
T 3cf2_A 381 LQIHTKNMKLA-DDVDLEQVANETHG 405 (806)
T ss_dssp HHHTCSSSEEC-TTCCHHHHHHHCCS
T ss_pred HHHHhcCCCCC-cccCHHHHHHhcCC
Confidence 87655433222 11225666766543
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.31 E-value=0.00016 Score=61.92 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=50.3
Q ss_pred CcccccCcCCH--------------HHHHHHHHHHHhc--cCCceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLST--------------DALLYMRWLLERY--KGLNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~--------------~~~~~L~~~le~~--~~~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
+||||+|.|.. ...+.|+..|+.. ..++.+|.+||.+..+ +++++ || ..+.|+.|+.++.
T Consensus 574 l~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r 653 (806)
T 1ypw_A 574 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp CCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHH
T ss_pred EEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHH
Confidence 68999999731 1245555555532 2355688888888889 99998 98 4899999999999
Q ss_pred HHHHHHHHHH
Q 042716 61 VEVLEFIAEQ 70 (137)
Q Consensus 61 ~~~l~~i~~~ 70 (137)
..+++..+++
T Consensus 654 ~~Il~~~l~~ 663 (806)
T 1ypw_A 654 VAILKANLRK 663 (806)
T ss_dssp HHHTTTTTSC
T ss_pred HHHHHHHhcc
Confidence 8888775543
No 89
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.07 E-value=0.0016 Score=55.89 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=50.8
Q ss_pred CcccccCcCCHH--------------HHHHHHHHHHhccCC--ceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHH
Q 042716 1 IILCEADKLSTD--------------ALLYMRWLLERYKGL--NKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEI 60 (137)
Q Consensus 1 iiiDEid~l~~~--------------~~~~L~~~le~~~~~--~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i 60 (137)
|||||+|.+... ..+.|+..|+..... +.+|.+||.+..| ++++- |+ ..+.|+.|+.++.
T Consensus 574 ifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R 653 (806)
T 3cf2_A 574 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp EECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHH
T ss_pred eechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHH
Confidence 589999998432 145677778755443 3455567888889 88875 77 5789999999988
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH----cCCcHHHHHHH
Q 042716 61 VEVLEFIAEQEGIQLPHQLAEKIADN----SKNNLRQAIRS 97 (137)
Q Consensus 61 ~~~l~~i~~~egi~i~~~~l~~i~~~----~~gd~R~aln~ 97 (137)
..+++...++..+.- +-.+..+++. +..|+..+.+.
T Consensus 654 ~~il~~~l~~~~~~~-~~dl~~la~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 654 VAILKANLRKSPVAK-DVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp HHTTTTTSSCC--CC-C----------------CHHHHHHH
T ss_pred HHHHHHHhcCCCCCC-CCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 888876655443321 1124455543 55677766543
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.93 E-value=0.011 Score=40.68 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=31.9
Q ss_pred CcccccC--cCCHHHHHHHHHHHHhcc-CCceEEEEeCCCCC
Q 042716 1 IILCEAD--KLSTDALLYMRWLLERYK-GLNKVFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid--~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~ 39 (137)
++|||++ .+++..+..|..+++... .+..+|++||.+..
T Consensus 104 lilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 104 LVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp EEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred EEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 5899998 678888899999887653 56789999998854
No 91
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.79 E-value=0.0065 Score=44.26 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=37.8
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhcc-------------CCceEEEEeCCCC---Cc-hhhhhcceeeEecCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYK-------------GLNKVFFCCSDVS---KL-QPIKSLCTVIQLLPPS 56 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~-------------~~~~~Il~~n~~~---~i-~~l~SRc~~i~~~~~~ 56 (137)
++|||+|.-.... ...++.+++-.+ ...|+|+|||... .. +.|.||+..+.|+.+-
T Consensus 107 iiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~~~ 180 (212)
T 1tue_A 107 AMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAF 180 (212)
T ss_dssp EEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCSCC
T ss_pred EEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcCCCC
Confidence 4789998422112 345677776532 1358999999853 34 8999999999998443
No 92
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.79 E-value=0.018 Score=40.33 Aligned_cols=64 Identities=25% Similarity=0.301 Sum_probs=48.0
Q ss_pred Cccccc---CcCCHHHHHHHHHHHHhccCCceEEEEeC--CCCCc-hhhhhc--ceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEA---DKLSTDALLYMRWLLERYKGLNKVFFCCS--DVSKL-QPIKSL--CTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEi---d~l~~~~~~~L~~~le~~~~~~~~Il~~n--~~~~i-~~l~SR--c~~i~~~~~~~~~i~~~l~~ 66 (137)
+++||+ ..++...++.+...+++ .++.+|+++. +...+ ..+.+| |.++.|.+.+.+++...+.+
T Consensus 103 lilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~~ 174 (178)
T 1ye8_A 103 IIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDILS 174 (178)
T ss_dssp EEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHHH
T ss_pred EEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHHH
Confidence 478995 45678889999999985 3444777773 34445 889999 89999999988777666543
No 93
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.65 E-value=0.019 Score=49.19 Aligned_cols=90 Identities=12% Similarity=0.190 Sum_probs=63.1
Q ss_pred CcccccCcCCH-----------HHHHHHHHHHHhccC--CceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLST-----------DALLYMRWLLERYKG--LNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~-----------~~~~~L~~~le~~~~--~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~~ 63 (137)
+||||+|.+.. ..+..|+..++.... ++.+|++||.+..+ +.+++ |+ ..+.+..|+.++...+
T Consensus 301 l~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~i 380 (806)
T 1ypw_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp EEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHH
T ss_pred EEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHH
Confidence 47999988753 246778888885443 45688888888889 88887 77 5789999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCcH
Q 042716 64 LEFIAEQEGIQLPHQLAEKIADNSKNNL 91 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~i~~~~~gd~ 91 (137)
+...+.+..+. .+..+..++..+.|-.
T Consensus 381 l~~~~~~~~l~-~~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 381 LQIHTKNMKLA-DDVDLEQVANETHGHV 407 (806)
T ss_dssp HHHTTTTSCCC-TTCCTHHHHHSCSSCC
T ss_pred HHHHHhcCCCc-ccchhHHHHHhhcCcc
Confidence 88766544332 2223555666555543
No 94
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.31 E-value=0.03 Score=39.33 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=39.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCC------Cc-hhhhhcc-eeeEecCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVS------KL-QPIKSLC-TVIQLLPPS 56 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~------~i-~~l~SRc-~~i~~~~~~ 56 (137)
|+|||++.++++....|..+.++ +.++++++...+ .. +.|.+++ .+.+++...
T Consensus 80 viIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ic 140 (184)
T 2orw_A 80 VFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVC 140 (184)
T ss_dssp EEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBCC
T ss_pred EEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhhheEEeeeec
Confidence 58999999988888888888873 778888876443 34 7788888 455665543
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.17 E-value=0.079 Score=50.92 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=53.6
Q ss_pred CcccccCcCCHH------HHHHHHHHHHhcc------------CCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCC
Q 042716 1 IILCEADKLSTD------ALLYMRWLLERYK------------GLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPS 56 (137)
Q Consensus 1 iiiDEid~l~~~------~~~~L~~~le~~~------------~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~ 56 (137)
+||||+|.-..+ ....|+..+|... .++.||.+||.+. .| +.+++||.++.++.|+
T Consensus 1340 lFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~ 1419 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPS 1419 (2695)
T ss_dssp EEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCT
T ss_pred EEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCC
Confidence 478998876433 5777888887310 1346788888774 48 9999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 042716 57 KQEIVEVLEFIAEQ 70 (137)
Q Consensus 57 ~~~i~~~l~~i~~~ 70 (137)
.+++..++..+...
T Consensus 1420 ~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1420 GKSLSQIYEIYYKA 1433 (2695)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887653
No 96
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.76 E-value=0.012 Score=42.18 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=37.5
Q ss_pred CcccccCcC--CH-HH--HHHHHHHHHhccC-CceEEEEeCCCCCc-hhhhhcce-eeEecCC
Q 042716 1 IILCEADKL--ST-DA--LLYMRWLLERYKG-LNKVFFCCSDVSKL-QPIKSLCT-VIQLLPP 55 (137)
Q Consensus 1 iiiDEid~l--~~-~~--~~~L~~~le~~~~-~~~~Il~~n~~~~i-~~l~SRc~-~i~~~~~ 55 (137)
++|||||.+ .. +. ...++..++.... ...+||+++.+..+ .+|++|+. .++|.++
T Consensus 91 liIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 91 VIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp EEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred EEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 589999999 32 11 1134455554433 34589999998889 99999985 5777664
No 97
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.82 E-value=0.36 Score=37.35 Aligned_cols=83 Identities=13% Similarity=0.206 Sum_probs=55.5
Q ss_pred CcccccCcCC----HHHHHHHHHHHHhccC-CceEEEEeCCCCCc-h--------hhhhcceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKLS----TDALLYMRWLLERYKG-LNKVFFCCSDVSKL-Q--------PIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l~----~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i-~--------~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
+++||+|.+. +.....+...+.+..+ ++.++++|-++..+ . ++.+.|...-|-+.+.+++.. +
T Consensus 266 i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~~~~~~~-~-- 342 (392)
T 4ag6_A 266 LVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQGEKDLEA-I-- 342 (392)
T ss_dssp EEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCCHHHHHH-H--
T ss_pred EEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCChhhHHH-H--
Confidence 5799999996 3456667777766544 56688888877665 2 788999765555666665333 2
Q ss_pred HHHHcCCCCCHHHHHHHHHHcCC
Q 042716 67 IAEQEGIQLPHQLAEKIADNSKN 89 (137)
Q Consensus 67 i~~~egi~i~~~~l~~i~~~~~g 89 (137)
++. +.+++...+.|.....|
T Consensus 343 -~~~--~~ls~~e~~~l~~~~~G 362 (392)
T 4ag6_A 343 -TTL--MNLSEAEHDLLVNAKRG 362 (392)
T ss_dssp -HHH--TTCCHHHHHHHHTCCTT
T ss_pred -HHH--hCCCHHHHHhccCCCCc
Confidence 222 34788887777765555
No 98
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.64 E-value=0.35 Score=35.85 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=45.2
Q ss_pred CcccccCcCCHH-----------HHHHHHHHHHhcc-C-CceEEEEeCCCCCc-hhhhh--cc-eeeEecCCCHHHHHHH
Q 042716 1 IILCEADKLSTD-----------ALLYMRWLLERYK-G-LNKVFFCCSDVSKL-QPIKS--LC-TVIQLLPPSKQEIVEV 63 (137)
Q Consensus 1 iiiDEid~l~~~-----------~~~~L~~~le~~~-~-~~~~Il~~n~~~~i-~~l~S--Rc-~~i~~~~~~~~~i~~~ 63 (137)
+++||+|.+... ..+.++..|.-.. . ...++.++|.+..+ ++++. |+ ..+.|+.|+.++...+
T Consensus 107 ~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~i 186 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI 186 (274)
T ss_dssp EEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHH
T ss_pred EeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHH
Confidence 478999987421 1233344443211 1 22355566777778 88875 76 6789999999999999
Q ss_pred HHHHHHH
Q 042716 64 LEFIAEQ 70 (137)
Q Consensus 64 l~~i~~~ 70 (137)
++..++.
T Consensus 187 l~~~~~~ 193 (274)
T 2x8a_A 187 LKTITKN 193 (274)
T ss_dssp HHHHTTT
T ss_pred HHHHHhc
Confidence 9887654
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.33 E-value=1.9 Score=41.75 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=63.4
Q ss_pred CcccccCcCCHHHHHHH-------HHHHHhc-------------cCCceEEEEeCCC----CCc-hhhhhcceeeEecCC
Q 042716 1 IILCEADKLSTDALLYM-------RWLLERY-------------KGLNKVFFCCSDV----SKL-QPIKSLCTVIQLLPP 55 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L-------~~~le~~-------------~~~~~~Il~~n~~----~~i-~~l~SRc~~i~~~~~ 55 (137)
+++||++++..+...++ ...+.+. ++++.+++|.|.. ..+ +.|++||..+.+..|
T Consensus 701 ~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~P 780 (2695)
T 4akg_A 701 GCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSP 780 (2695)
T ss_dssp EEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCC
T ss_pred eeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCC
Confidence 36899999999987776 3333222 1234456666632 348 899999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------------HcCCcHHHHHHHHHHH
Q 042716 56 SKQEIVEVLEFIAEQEGIQLPHQLAEKIAD-------------NSKNNLRQAIRSFEAS 101 (137)
Q Consensus 56 ~~~~i~~~l~~i~~~egi~i~~~~l~~i~~-------------~~~gd~R~aln~L~~~ 101 (137)
+.+.+..++.. ..|+.........++. +.+..+|.+...|..+
T Consensus 781 d~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~a 836 (2695)
T 4akg_A 781 QSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNC 836 (2695)
T ss_dssp CHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHH
Confidence 99988877543 3566555444443332 1234677777666544
No 100
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.22 E-value=0.32 Score=34.08 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=28.9
Q ss_pred CcccccCcCC--HHHHHHHHHHHHhccCCceEEEEeCCCC-Cchhhhh
Q 042716 1 IILCEADKLS--TDALLYMRWLLERYKGLNKVFFCCSDVS-KLQPIKS 45 (137)
Q Consensus 1 iiiDEid~l~--~~~~~~L~~~le~~~~~~~~Il~~n~~~-~i~~l~S 45 (137)
+|+||+|.+. .+....+..++...+.+.++++.+..++ .+..+..
T Consensus 162 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 162 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp EEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH
T ss_pred EEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHH
Confidence 5899999984 3455667777776666677666655544 4443433
No 101
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=88.69 E-value=2.2 Score=34.43 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=56.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeE-ecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQ-LLPPSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~-~~~~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+++|+++.. ..++..+.++++|+||.+..-..........+. ..+++.++....+...+....-. .++.
T Consensus 240 LVLDdv~~~---------~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~ 309 (591)
T 1z6t_A 240 LILDDVWDS---------WVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKAD-LPEQ 309 (591)
T ss_dssp EEEEEECCH---------HHHHTTCSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGG-SCTH
T ss_pred EEEeCCCCH---------HHHHHhcCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCccc-ccHH
Confidence 478888752 123334667889998887643222222222222 25899999999888766431111 1456
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
+..|++.++|.+-.+--+...+.
T Consensus 310 ~~~i~~~~~G~PLal~~~a~~l~ 332 (591)
T 1z6t_A 310 AHSIIKECKGSPLVVSLIGALLR 332 (591)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHh
Confidence 78999999998876655544443
No 102
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.61 E-value=0.18 Score=34.95 Aligned_cols=37 Identities=11% Similarity=-0.076 Sum_probs=23.3
Q ss_pred CcccccCcCCHH--HHHHHH-HHHHhc-cCCceEEEEeCCC
Q 042716 1 IILCEADKLSTD--ALLYMR-WLLERY-KGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~--~~~~L~-~~le~~-~~~~~~Il~~n~~ 37 (137)
++|||++..... .+..++ .+++.. ..+.++|++||..
T Consensus 119 lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 119 LMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp EEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 589999775443 355344 466543 4567899999965
No 103
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=87.46 E-value=0.67 Score=37.54 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=53.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeEecCCCHHHHHHHHHHHHHHcCC-CCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGI-QLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi-~i~~~~ 79 (137)
|++|+++....- .+. . ..++++|+||.+..-..........+++++++.++....+...+..... .-.++.
T Consensus 247 lVLDdv~~~~~~---~~~---~--~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 318 (549)
T 2a5y_B 247 FVFDDVVQEETI---RWA---Q--ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDV 318 (549)
T ss_dssp EEEEEECCHHHH---HHH---H--HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHH
T ss_pred EEEECCCCchhh---ccc---c--cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHH
Confidence 478888873221 222 1 1577888888764322322223357999999999999888775422211 111345
Q ss_pred HHHHHHHcCCcHHHHH
Q 042716 80 AEKIADNSKNNLRQAI 95 (137)
Q Consensus 80 l~~i~~~~~gd~R~al 95 (137)
...|++.|+|-+-.+.
T Consensus 319 ~~~I~~~c~GlPLAl~ 334 (549)
T 2a5y_B 319 LNKTIELSSGNPATLM 334 (549)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCChHHHH
Confidence 7789999999775544
No 104
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=85.83 E-value=0.27 Score=33.99 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=25.5
Q ss_pred CcccccCcCCH-HHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLST-DALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~-~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+|+||+|.+.. +....+..++...+.+.++++.+...+
T Consensus 150 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 150 IVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred EEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence 58999998754 345566777776666677666555544
No 105
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.73 E-value=6.8 Score=34.00 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=56.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceeeEecC-CCHHHHHHHHHHHHHHcCCCCCHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVIQLLP-PSKQEIVEVLEFIAEQEGIQLPHQL 79 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i~~~~-~~~~~i~~~l~~i~~~egi~i~~~~ 79 (137)
+|||+++.. ..++....++++|+||.+..-..........+++.+ ++.++....+...+....-.. ++.
T Consensus 240 lvlDd~~~~---------~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~-~~~ 309 (1249)
T 3sfz_A 240 LILDDVWDP---------WVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDL-PAE 309 (1249)
T ss_dssp EEEESCCCH---------HHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTC-CTH
T ss_pred EEEecCCCH---------HHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhC-cHH
Confidence 478888753 123334567889999887643233333446788886 999999998887664332222 346
Q ss_pred HHHHHHHcCCcHHHHHHH
Q 042716 80 AEKIADNSKNNLRQAIRS 97 (137)
Q Consensus 80 l~~i~~~~~gd~R~aln~ 97 (137)
...|++.++|-+-.+.-.
T Consensus 310 ~~~i~~~~~glPLal~~~ 327 (1249)
T 3sfz_A 310 AHSIIKECKGSPLVVSLI 327 (1249)
T ss_dssp HHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 788999999876544433
No 106
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=85.59 E-value=0.61 Score=33.30 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=20.9
Q ss_pred CcccccCcCCHHH--H-HHHHHHHHhccCCceEE-EEeCCCC
Q 042716 1 IILCEADKLSTDA--L-LYMRWLLERYKGLNKVF-FCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~--~-~~L~~~le~~~~~~~~I-l~~n~~~ 38 (137)
+||||+|.++-.. . ..+..++...+ +.+++ ++++-+.
T Consensus 180 lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~ 220 (235)
T 3llm_A 180 VIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDT 220 (235)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCC
T ss_pred EEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCH
Confidence 5899999964433 2 34555665544 45544 4444433
No 107
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.95 E-value=0.28 Score=37.01 Aligned_cols=37 Identities=14% Similarity=0.022 Sum_probs=22.0
Q ss_pred CcccccCcC--CHHHHHHH-HHHHHhc-cCCceEEEEeCCC
Q 042716 1 IILCEADKL--STDALLYM-RWLLERY-KGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l--~~~~~~~L-~~~le~~-~~~~~~Il~~n~~ 37 (137)
+||||++.. +...+..| ..+++.. ..+.++|++||.+
T Consensus 218 LiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 218 LILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp EEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 589999654 43334434 3466643 3467899999954
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.80 E-value=6.6 Score=38.83 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=68.0
Q ss_pred CcccccCcCCHH------HHHHHHHHHHhc------------cCCceEEEEeCCCC-----Cc-hhhhhcceeeEecCCC
Q 042716 1 IILCEADKLSTD------ALLYMRWLLERY------------KGLNKVFFCCSDVS-----KL-QPIKSLCTVIQLLPPS 56 (137)
Q Consensus 1 iiiDEid~l~~~------~~~~L~~~le~~------------~~~~~~Il~~n~~~-----~i-~~l~SRc~~i~~~~~~ 56 (137)
+||||++.-..+ ....|+-.++.. ..++.||.++|.+. .+ +.+.+|+.++.+..|+
T Consensus 1378 lFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps 1457 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPS 1457 (3245)
T ss_dssp EEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCC
T ss_pred EEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCC
Confidence 468999876543 567788888742 12455788888763 38 9999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CC-----CCCHHHHHHHHH---------------HcCCcHHHHHHHHHHHH
Q 042716 57 KQEIVEVLEFIAEQE-GI-----QLPHQLAEKIAD---------------NSKNNLRQAIRSFEASR 102 (137)
Q Consensus 57 ~~~i~~~l~~i~~~e-gi-----~i~~~~l~~i~~---------------~~~gd~R~aln~L~~~~ 102 (137)
.+++..+...+...- +. .+.+..+...++ +.--++|.+.+.+|.+.
T Consensus 1458 ~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll 1524 (3245)
T 3vkg_A 1458 TSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALL 1524 (3245)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHH
Confidence 999888876654421 10 112333333332 34458888888888654
No 109
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=84.46 E-value=0.3 Score=33.75 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=25.7
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVSK 39 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~~ 39 (137)
+|+||+|.+.... ...+..++...+.+.++++.+...+.
T Consensus 148 iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 148 AVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPS 187 (207)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCH
T ss_pred EEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCH
Confidence 5899999885443 45566677666666776666655543
No 110
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=84.24 E-value=0.34 Score=33.97 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=28.0
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCC-Cchhhhh
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVS-KLQPIKS 45 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~-~i~~l~S 45 (137)
+|+||+|.+.... ...+..++...+.+.++++.+...+ .+..+.+
T Consensus 159 iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~ 205 (224)
T 1qde_A 159 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTT 205 (224)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHH
T ss_pred EEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHH
Confidence 5899999986543 4456777776666776666555444 3433333
No 111
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=84.07 E-value=0.72 Score=33.78 Aligned_cols=34 Identities=6% Similarity=-0.013 Sum_probs=22.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+|+||+|.+... .+..++.......++++.|-.+
T Consensus 229 vIiDEaH~~~~~---~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 229 MMNDECHLATGK---SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp EEEETGGGCCHH---HHHHHTTTCTTCCEEEEECSSC
T ss_pred EEEECCccCCcc---cHHHHHHHhhcCCeEEEEeCCC
Confidence 589999999965 5556666554455655555444
No 112
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=83.41 E-value=0.38 Score=34.15 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=25.4
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+++||+|.+.... ...+..+++..+...++++.+...+
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 5899999885433 5567777777666776555554443
No 113
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=82.80 E-value=0.44 Score=33.61 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=25.4
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+|+||+|.+.... ...+..++...+.+.++++.+...+
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 209 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWP 209 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCC
Confidence 5899999986543 5556677777666777666554443
No 114
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=82.63 E-value=0.42 Score=33.54 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=27.7
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCC-CCchhhhh
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDV-SKLQPIKS 45 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~-~~i~~l~S 45 (137)
+++||+|.+.... ...+..+++..+.+.++++.+... ..+..+..
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 200 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLK 200 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHH
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHH
Confidence 5899999986543 455677777666666655554444 44533333
No 115
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=81.31 E-value=0.73 Score=34.42 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=26.0
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLST--DALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+||||+|.|.. +....+..++...+.++.+++.+...+
T Consensus 239 lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp EEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred EEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 58999999864 445556677776666777666655444
No 116
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.62 E-value=0.53 Score=33.60 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=25.2
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+|+||+|.+.... ...+..++...+.+.++++.+...+
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred EEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 5899999885432 4456667776666777666655544
No 117
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=80.28 E-value=0.65 Score=37.75 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=19.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
||+||+|++.......+..+++..+....+.|+++..
T Consensus 306 vIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~ 342 (590)
T 3h1t_A 306 IIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPL 342 (590)
T ss_dssp EEESCCC---------CHHHHHHSTTSEEEEEESSCS
T ss_pred EEEECCccccccchHHHHHHHHhCCcceEEEeccccc
Confidence 5899999997765566777777766555566666643
No 118
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=79.16 E-value=0.61 Score=33.34 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=25.7
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+++||+|.|.... ...+..++...+.+.++++.+...+
T Consensus 180 lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~ 218 (242)
T 3fe2_A 180 LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 218 (242)
T ss_dssp EEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCC
T ss_pred EEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecC
Confidence 5899999986643 5556777776666677666554443
No 119
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=78.99 E-value=0.53 Score=33.40 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=23.8
Q ss_pred CcccccCcCCHH--HHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTD--ALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~--~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+|+||+|.+... ....+..++...+.+.++++.+...+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYP 209 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccC
Confidence 589999998432 34556666666665666555544443
No 120
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=78.95 E-value=1 Score=33.91 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=25.7
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLST--DALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+|+||+|.+.. +....+..++...+...++++.|..++
T Consensus 156 vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 195 (391)
T 1xti_A 156 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS 195 (391)
T ss_dssp EEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCC
T ss_pred EEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCC
Confidence 58999999965 445666777776666666666555443
No 121
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.33 E-value=20 Score=35.67 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=64.0
Q ss_pred cccccCcCCHHHHHHHHHHHH-------h--------------ccCCceEEEEeCCC----CCc-hhhhhcceeeEecCC
Q 042716 2 ILCEADKLSTDALLYMRWLLE-------R--------------YKGLNKVFFCCSDV----SKL-QPIKSLCTVIQLLPP 55 (137)
Q Consensus 2 iiDEid~l~~~~~~~L~~~le-------~--------------~~~~~~~Il~~n~~----~~i-~~l~SRc~~i~~~~~ 55 (137)
++||++++..+...++..-+. . ..+++.+++|.|.- ..+ ..|++||..+.+..|
T Consensus 661 cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~P 740 (3245)
T 3vkg_A 661 CFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKP 740 (3245)
T ss_dssp EEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSC
T ss_pred EehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCC
Confidence 689999999887555433222 0 11245566666632 358 899999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------------HcCCcHHHHHHHHHHHH
Q 042716 56 SKQEIVEVLEFIAEQEGIQLPHQLAEKIAD-------------NSKNNLRQAIRSFEASR 102 (137)
Q Consensus 56 ~~~~i~~~l~~i~~~egi~i~~~~l~~i~~-------------~~~gd~R~aln~L~~~~ 102 (137)
+.+.+.+++- ..+|+.-.......++. +.+-.||.....|..+.
T Consensus 741 d~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG 797 (3245)
T 3vkg_A 741 DREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAG 797 (3245)
T ss_dssp CHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Confidence 9998888753 35677544333333331 23456888888886553
No 122
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.93 E-value=0.72 Score=33.58 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=24.9
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+|+||+|.|.... ...+..++...+...++++.+...+
T Consensus 205 lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred EEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 5899999986543 4556677776666676555554443
No 123
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=77.24 E-value=0.76 Score=33.19 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=24.6
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+|+||+|.+.... ...+.+++...+.+.++++.+...+
T Consensus 190 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 190 LVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred EEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 5899999886543 4556777776666666555544443
No 124
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=76.68 E-value=8.6 Score=31.80 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=46.1
Q ss_pred CcccccCcCC----HHHHHHHHHHHHhccC-CceEEEEeCCCC--Cc-hhhhhcce-eeEecCCCHHHHHHHH
Q 042716 1 IILCEADKLS----TDALLYMRWLLERYKG-LNKVFFCCSDVS--KL-QPIKSLCT-VIQLLPPSKQEIVEVL 64 (137)
Q Consensus 1 iiiDEid~l~----~~~~~~L~~~le~~~~-~~~~Il~~n~~~--~i-~~l~SRc~-~i~~~~~~~~~i~~~l 64 (137)
|+|||++.+. +.....|.++.-+-.. +.++|++|..+. .+ ..+++-|. .+.|+-.+..+...+|
T Consensus 347 vVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 347 VVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp EEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred EEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 5899999884 4456667777776443 556888887776 57 88999884 5778777777766655
No 125
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.81 E-value=1.8 Score=33.02 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=21.5
Q ss_pred CcccccCcCCHH-HHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTD-ALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~-~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
||+||+|.+... ....+.+.+.......++++.|-.+
T Consensus 129 vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp 166 (494)
T 1wp9_A 129 IVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASP 166 (494)
T ss_dssp EEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCS
T ss_pred EEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCC
Confidence 589999999643 4444555554444445544444333
No 126
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.51 E-value=7.2 Score=22.87 Aligned_cols=50 Identities=4% Similarity=0.001 Sum_probs=37.2
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC
Q 042716 52 LLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMN 105 (137)
Q Consensus 52 ~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~ 105 (137)
+...+.++..+.|+.. ==.++.++++.++..++||+-.+++.|-.+...+
T Consensus 13 ~~~~~~~~~v~~L~~M----FP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~ 62 (67)
T 2dhy_A 13 VRRLEFNQAMDDFKTM----FPNMDYDIIECVLRANSGAVDATIDQLLQMNLES 62 (67)
T ss_dssp CCCCCSHHHHHHHHHH----CSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCS
T ss_pred ccCCCHHHHHHHHHHH----CCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Confidence 4445556666666542 1367899999999999999999999987776544
No 127
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=74.41 E-value=4.5 Score=23.10 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 042716 74 QLPHQLAEKIADNSKNNLRQAIRSFEASRQ 103 (137)
Q Consensus 74 ~i~~~~l~~i~~~~~gd~R~aln~L~~~~~ 103 (137)
.++.++++.+...++||+-.+++.|-.+..
T Consensus 22 ~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 22 NMDQEVIRSVLEAQRGNKDAAINSLLQMGE 51 (59)
T ss_dssp SSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence 578999999999999999999999976653
No 128
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=74.30 E-value=3.1 Score=34.42 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=22.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-CCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-GLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~ 37 (137)
|||||+|.++......+..+++..+ .+.++++.+-.+
T Consensus 281 iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~ 318 (618)
T 2whx_A 281 IVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATP 318 (618)
T ss_dssp EEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred EEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCC
Confidence 5899999997765555544444432 455555554433
No 129
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=73.86 E-value=4.2 Score=31.81 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=10.6
Q ss_pred CcccccCcCCHHH
Q 042716 1 IILCEADKLSTDA 13 (137)
Q Consensus 1 iiiDEid~l~~~~ 13 (137)
+||||+|.++...
T Consensus 97 vViDEaH~~~~~~ 109 (431)
T 2v6i_A 97 YIMDEAHFLDPAS 109 (431)
T ss_dssp EEEESTTCCSHHH
T ss_pred EEEeCCccCCccH
Confidence 5899999997554
No 130
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=73.85 E-value=12 Score=23.36 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHH
Q 042716 12 DALLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 12 ~~~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
+....+..+-+. ...+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+...
T Consensus 61 ~g~~~~~~l~~~-~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 61 ESLNLIRRIREE-FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp HHHHHHHHHHHH-CTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 334444444443 347888888776654 3 566666666777788999998888876653
No 131
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=71.90 E-value=15 Score=22.86 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=31.9
Q ss_pred cCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
....++|+.+...... ..+...+.-|-.+|.+.+++...+..+..
T Consensus 81 ~~~~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 81 AHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp TTCCEEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 4456677777765555 67777777777778888888888876554
No 132
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=71.62 E-value=1.6 Score=32.65 Aligned_cols=38 Identities=11% Similarity=-0.000 Sum_probs=25.1
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLST--DALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
||+||+|.+.. .....+..+....+.+.++++.+..++
T Consensus 149 iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 149 FVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFA 188 (395)
T ss_dssp EEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCC
T ss_pred EEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 58999999865 234555666666566677666665543
No 133
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=71.27 E-value=3.9 Score=29.03 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=32.0
Q ss_pred Cccccc------CcCCHHHHHHHHHHHHhccCCceEEEEeCCCCC-c---hhhhhcce
Q 042716 1 IILCEA------DKLSTDALLYMRWLLERYKGLNKVFFCCSDVSK-L---QPIKSLCT 48 (137)
Q Consensus 1 iiiDEi------d~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~-i---~~l~SRc~ 48 (137)
||+||+ +.++.+ .++.++++-+.+..+|+|+|.++. + .++.|-..
T Consensus 124 vILDEi~~al~~g~l~~~---ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~ 178 (196)
T 1g5t_A 124 VVLDELTYMVAYDYLPLE---EVISALNARPGHQTVIITGRGCHRDILDLADTVSELR 178 (196)
T ss_dssp EEEETHHHHHHTTSSCHH---HHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECC
T ss_pred EEEeCCCccccCCCCCHH---HHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeec
Confidence 578888 445544 477777777788999999999875 2 45555443
No 134
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=70.87 E-value=1.3 Score=33.25 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=25.9
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+|+||+|.+.... ...+..++...+...++++.+..++
T Consensus 166 vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 204 (394)
T 1fuu_A 166 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 204 (394)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred EEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecC
Confidence 5899999985443 4456666666666777777666554
No 135
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=70.63 E-value=1.2 Score=33.75 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=26.3
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
||+||+|.+.... ...+..++...+.+.++++.+..+
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 224 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 224 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCC
T ss_pred EEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 5899999985443 456777777766777777766554
No 136
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=70.58 E-value=1.1 Score=33.34 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=26.0
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+|+||+|.+.... ...+.+++...+...++++.+..++
T Consensus 151 iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 189 (367)
T 1hv8_A 151 FILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMP 189 (367)
T ss_dssp EEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred EEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccC
Confidence 5899999984433 4566777776666777777665554
No 137
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=70.11 E-value=9.8 Score=24.25 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=46.4
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNS 87 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~ 87 (137)
...+..+-+. ...+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+.... ..+++.....++...
T Consensus 67 ~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~-~~~~~~~~~~l~~~~ 141 (153)
T 3cz5_A 67 IEATRHIRQW-DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR-RAMSPDIAQEIAEER 141 (153)
T ss_dssp HHHHHHHHHH-CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC-CEECHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC-ccCChHHHHHHHhhc
Confidence 4444444443 346778887776643 3 6666666677777889999999988766544 446676666665443
No 138
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=70.10 E-value=3.7 Score=28.75 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=25.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
|+|||++.++++....+..+.+ . +.++|+++-+.
T Consensus 85 ViIDEaqfl~~~~v~~l~~l~~--~-~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 85 IAIDEVQFFDDEIVEIVNKIAE--S-GRRVICAGLDM 118 (191)
T ss_dssp EEECSGGGSCTHHHHHHHHHHH--T-TCEEEEEECSB
T ss_pred EEEECCCCCCHHHHHHHHHHHh--C-CCEEEEEeccc
Confidence 5899999998877766666654 3 77899988643
No 139
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=70.07 E-value=1.8 Score=34.62 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=26.0
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLST--DALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
||+||+|.+.. .....+..+....+.+.++++.+..++
T Consensus 263 IIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~ 302 (508)
T 3fho_A 263 FVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFS 302 (508)
T ss_dssp EEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCS
T ss_pred EEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCC
Confidence 58999999865 334556666766666787776665554
No 140
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=69.59 E-value=1.9 Score=30.61 Aligned_cols=40 Identities=10% Similarity=0.006 Sum_probs=23.9
Q ss_pred CcccccCcCCH----HHHHHHHHHHHhc-cCCceEEE-EeCCCCCc
Q 042716 1 IILCEADKLST----DALLYMRWLLERY-KGLNKVFF-CCSDVSKL 40 (137)
Q Consensus 1 iiiDEid~l~~----~~~~~L~~~le~~-~~~~~~Il-~~n~~~~i 40 (137)
+|+||+|.+.. +....+..++... +.+.++++ +++-+..+
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v 224 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDV 224 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHH
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHH
Confidence 58999999965 3455666666553 23455444 44444334
No 141
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=69.45 E-value=1.4 Score=33.49 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=25.3
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+|+||+|.+.... ...+..++...+...++++.+..+
T Consensus 183 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 220 (410)
T 2j0s_A 183 LVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 220 (410)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred EEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCC
Confidence 5899999875443 566777777666667766666544
No 142
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=69.16 E-value=18 Score=22.92 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=39.3
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKI 83 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i 83 (137)
...+..+-+. ...+++|+.+..... + ..+..-+.-|-.+|.+.+++...+..+.... ..+++.....+
T Consensus 77 ~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~-~~~~~~~~~~l 147 (152)
T 3eul_A 77 AQVAAAVRSY-ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR-DVVAPSLVGGL 147 (152)
T ss_dssp HHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHhc-CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC-eeeCHHHHHHH
Confidence 3444444433 457788888876653 3 6676667777778889999999998876654 33454444433
No 143
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=68.77 E-value=17 Score=22.09 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=33.6
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcC
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEG 72 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~eg 72 (137)
..+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+.+..|
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 127 (128)
T 1jbe_A 78 SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLG 127 (128)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHhc
Confidence 45777777766543 4 66666666777888899999888887766544
No 144
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=68.46 E-value=11 Score=23.39 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 13 ALLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 13 ~~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
....+..+-+.....+++|+.+..... . ..+..-+.-+-.+|.+.+++...+++.....
T Consensus 67 g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 67 GLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp HHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 344444444432356788887776654 4 6666667777788889999888888765443
No 145
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=68.33 E-value=18 Score=27.66 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=30.8
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+++||... |+......+...+.+...++.+|++|.++
T Consensus 319 LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~ 356 (415)
T 4aby_A 319 VVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLA 356 (415)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 47899884 89999999999999877667788888775
No 146
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=68.21 E-value=8.7 Score=25.15 Aligned_cols=51 Identities=6% Similarity=-0.063 Sum_probs=33.5
Q ss_pred cccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCC------Cc-hhhhhcceeeEe
Q 042716 2 ILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVS------KL-QPIKSLCTVIQL 52 (137)
Q Consensus 2 iiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~------~i-~~l~SRc~~i~~ 52 (137)
++.+.+. ++.+...+|...++.|++.+.+|+++.... ++ +++.....++.+
T Consensus 81 ~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 81 LLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp EEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred EEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 3444433 566677888999998888888888875432 25 566555555543
No 147
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=67.60 E-value=1.9 Score=31.53 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=23.6
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
||+||+|.+.... ...+..++...+....+++.+..+
T Consensus 133 iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~ 170 (337)
T 2z0m_A 133 VIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATI 170 (337)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred EEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcC
Confidence 5899999986543 445566666666666665544333
No 148
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=67.41 E-value=15 Score=22.82 Aligned_cols=58 Identities=9% Similarity=-0.012 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcc-CCceEEEEeCCCC--Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYK-GLNKVFFCCSDVS--KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~~~-~~~~~Il~~n~~~--~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+..+-+.+. .++++|+.+.... .. ..+..-+.-|-.+|.+.+++...+..+....
T Consensus 62 ~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 62 PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp -CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 333444443321 5678777776553 34 6777777778888999999999998876544
No 149
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=67.10 E-value=5.7 Score=33.38 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=26.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCc---eEEEEeCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLN---KVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~---~~Il~~n~~~ 38 (137)
+||||+|.++.+....+..+++..+... .|+++++-+.
T Consensus 322 lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 322 IICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp EEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred EEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 5899999999887777777777655433 2555665443
No 150
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=66.89 E-value=20 Score=22.22 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcC
Q 042716 12 DALLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEG 72 (137)
Q Consensus 12 ~~~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~eg 72 (137)
+....+..+-+. ...+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+.....
T Consensus 66 ~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 66 SGIELLETLVKR-GFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp HHHHHHHHHHHT-TCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhC-CCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 344445444444 357888888876654 4 67777777788889999999999988776553
No 151
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=66.80 E-value=6.6 Score=21.56 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 74 QLPHQLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 74 ~i~~~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
.++..++......++||+-.|+++|=..
T Consensus 17 ~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 17 AISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 5678889999999999999999987443
No 152
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=66.49 E-value=2.1 Score=32.33 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=24.6
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLST--DALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
||+||+|.+.. .....+..+....+.+.++++.+..+
T Consensus 172 iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 210 (412)
T 3fht_A 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 210 (412)
T ss_dssp EEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred EEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeec
Confidence 58999998743 34555566666656677766666554
No 153
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=66.12 E-value=20 Score=22.87 Aligned_cols=42 Identities=10% Similarity=0.153 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 58 QEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 58 ~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
.++..-++.+++.-|+ +++.+...+..++||+..|++.|..-
T Consensus 37 ~d~eekVk~L~EmtG~--seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGK--NQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHHHTCC--CHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHhhCC--CHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3444555666666575 57778888888999999999988543
No 154
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=65.96 E-value=17 Score=22.39 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=29.8
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
..+++|+.|.+... . ..+..-+.-|-.+|.+.+++...+..+.
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 80 KEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp TTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHh
Confidence 45677777766543 3 5666666677778888888888877654
No 155
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=64.45 E-value=14 Score=20.56 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 042716 57 KQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEA 100 (137)
Q Consensus 57 ~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~ 100 (137)
+..+...+.+ ....|++-..+=+..++...+||+-+++..||.
T Consensus 7 D~rl~~al~q-Ml~MGF~negGWLt~LL~~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 7 DPRLIESLSQ-MLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQY 49 (52)
T ss_dssp CHHHHHHHHH-HHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHTT
T ss_pred ChHHHHHHHH-HHHcCCCccccHHHHHHHHccCCHHHHHHHhhh
Confidence 3344444443 345677766666889999999999999999864
No 156
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=64.34 E-value=2.1 Score=33.59 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=26.0
Q ss_pred CcccccCcCCH--HHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLST--DALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~--~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
|||||+|.+.. .....+..++...+.++++++.+..++
T Consensus 239 iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 278 (479)
T 3fmp_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (479)
T ss_dssp EEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCC
T ss_pred EEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCC
Confidence 58999998843 445556666666666777777766554
No 157
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=64.14 E-value=2 Score=30.60 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=21.4
Q ss_pred CcccccCcCCHHH-HHHHHHHHHh--ccC--CceEEEEeCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLER--YKG--LNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~--~~~--~~~~Il~~n~~~ 38 (137)
+|+||+|.|.... ...+..+++. .+. +.++++.+..++
T Consensus 178 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 178 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred EEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 5899999986443 4456666663 222 344444444443
No 158
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=63.78 E-value=22 Score=21.58 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=32.6
Q ss_pred cCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
..++++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+..
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 73 KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 356788877776543 4 66777677777888899998888877653
No 159
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=62.85 E-value=24 Score=21.76 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=36.3
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
...+..+-+ .....++|+.+..... . ..++.-+.-+-.+|.+.+++...+..+..
T Consensus 65 ~~~~~~l~~-~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 65 LEVLAEIRK-KHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp HHHHHHHHH-TTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 333333333 3346788888776653 4 67776677777788888888888877653
No 160
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=62.74 E-value=5.1 Score=31.57 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=20.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEE-EeCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFF-CCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il-~~n~ 36 (137)
||+||+|.+.... +..++.......++++ +++-
T Consensus 229 iIiDE~H~~~~~~---~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 229 MMNDECHLATGKS---ISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp EEEETGGGCCHHH---HHHHGGGCTTCCEEEEEESCG
T ss_pred EEEECCcCCCccc---HHHHHHhcccCcEEEEEEeCC
Confidence 5899999999854 4455555544445444 5543
No 161
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=62.65 E-value=6.2 Score=27.39 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=40.2
Q ss_pred CcccccCcC---CHHHHHHHHHHHHhccCCceEEE-EeC---CC-CCc-hhhhhc--ceeeEecCCCHHHHHHHHHH
Q 042716 1 IILCEADKL---STDALLYMRWLLERYKGLNKVFF-CCS---DV-SKL-QPIKSL--CTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 1 iiiDEid~l---~~~~~~~L~~~le~~~~~~~~Il-~~n---~~-~~i-~~l~SR--c~~i~~~~~~~~~i~~~l~~ 66 (137)
++|||+..| +...+.+|.++++.+ .++|+ +.. .. ..+ ..+..+ +.++.+.+-+.+.+...+.+
T Consensus 109 lilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~~ 182 (189)
T 2i3b_A 109 CVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIVT 182 (189)
T ss_dssp EEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHHH
T ss_pred EEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHHH
Confidence 579997766 555688888888733 33554 222 22 134 666664 68999988787766665543
No 162
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=62.38 E-value=5.9 Score=29.85 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=22.5
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+|+||+|.+.... ...+..++...+...++++.+...
T Consensus 167 vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~ 204 (400)
T 1s2m_A 167 FIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATF 204 (400)
T ss_dssp EEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred EEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecC
Confidence 5899999876544 444555665555556655544433
No 163
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=62.34 E-value=9 Score=27.49 Aligned_cols=32 Identities=16% Similarity=-0.068 Sum_probs=25.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCS 35 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n 35 (137)
|+|||++.++.+....+..+.+ .+.++|++..
T Consensus 93 ViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 93 IGIDEVQFFDDRICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp EEECSGGGSCTHHHHHHHHHHH---TTCEEEEECC
T ss_pred EEEecCccCcHHHHHHHHHHHh---CCCeEEEEec
Confidence 5899999999876666666554 2788999987
No 164
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=62.29 E-value=25 Score=21.78 Aligned_cols=46 Identities=9% Similarity=-0.034 Sum_probs=32.3
Q ss_pred cCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
...+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+.+.
T Consensus 75 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 75 TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 446777777776654 4 666666666777788888888888776554
No 165
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=61.73 E-value=5.7 Score=31.31 Aligned_cols=35 Identities=6% Similarity=-0.045 Sum_probs=28.4
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
+++||++.++...+..|.+.++ .++.+++++...+
T Consensus 132 iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 132 LICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp EEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred EEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 5899999999998888888774 5778888886554
No 166
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=61.48 E-value=27 Score=21.80 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 10 STDALLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 10 ~~~~~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
..+....+..+-+. ...+++|+.+..... . ..++.-+.-|-.+|.+.+++...+..+.+..
T Consensus 79 ~~~g~~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 79 DTAELAAIEKLSRL-HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp CHHHHHHHHHHHHH-CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHh-CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 34445555555444 357888888876653 4 6666666778888899999999998876543
No 167
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=61.19 E-value=26 Score=22.04 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=38.4
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+..+-+. ..++++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+....
T Consensus 82 ~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 82 LEVLEWIRSE-KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp HHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh-CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 3344444433 457888888876653 4 6676667777778889999999888766543
No 168
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=60.69 E-value=24 Score=21.56 Aligned_cols=56 Identities=5% Similarity=0.010 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcc-CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYK-GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 14 ~~~L~~~le~~~-~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
...+..+-+.+. ..+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+.+
T Consensus 71 ~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 71 REVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 344444444321 46777777776643 3 56666666677778888888888876654
No 169
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=60.40 E-value=20 Score=22.13 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+..+-+. ...+++|+.+..... . ..+..-..-|-.+|.+.+++...+.++.+..
T Consensus 67 ~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 67 LEMLDRIKAG-GAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp HHHHHHHHHT-TCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 3334333333 346777777766653 3 5566656666677778888888887766543
No 170
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=60.04 E-value=26 Score=21.50 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=36.6
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
...+..+-+. ..+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+.+.
T Consensus 71 ~~~~~~l~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 71 VETAARLAAG--CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp HHHHHHHHHH--SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 3344444443 56788888776653 3 566666666777788999988888876654
No 171
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=59.26 E-value=26 Score=20.90 Aligned_cols=55 Identities=7% Similarity=-0.006 Sum_probs=36.1
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHH
Q 042716 15 LYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 15 ~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
..+..+-+. ...+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+.+.
T Consensus 61 ~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 61 SLIRRWRSN-DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp HHHHHHHHT-TCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 333333333 346777777766543 3 666666777778888999988888776543
No 172
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=59.16 E-value=14 Score=22.70 Aligned_cols=58 Identities=7% Similarity=0.082 Sum_probs=35.3
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+..+-+......++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+..+.
T Consensus 64 ~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 64 LAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp HHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 33344444432345677766665542 3 5666666667777888888888887765443
No 173
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=59.09 E-value=15 Score=22.73 Aligned_cols=51 Identities=6% Similarity=0.005 Sum_probs=34.5
Q ss_pred HHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 17 MRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 17 L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
+..+-+. ...+++|+.+..... . ..+..-+.-|-.+|.+.+++...+....
T Consensus 78 ~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 78 IVEARAL-WATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp HHHHHGG-GTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC
T ss_pred HHHHHhh-CCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHh
Confidence 3334333 347888888776653 3 6666666777778889999888887644
No 174
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=59.01 E-value=10 Score=29.73 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=10.4
Q ss_pred CcccccCcCCHHH
Q 042716 1 IILCEADKLSTDA 13 (137)
Q Consensus 1 iiiDEid~l~~~~ 13 (137)
|||||+|.++...
T Consensus 114 iViDEah~~~~~~ 126 (451)
T 2jlq_A 114 IVMDEAHFTDPCS 126 (451)
T ss_dssp EEEETTTCCSHHH
T ss_pred EEEeCCccCCcch
Confidence 5899999996544
No 175
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=59.01 E-value=29 Score=21.35 Aligned_cols=47 Identities=9% Similarity=-0.009 Sum_probs=33.3
Q ss_pred cCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 25 KGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+.+..
T Consensus 82 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 82 TANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 356788887776643 3 5666666677777888888888888776544
No 176
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=58.96 E-value=30 Score=21.98 Aligned_cols=46 Identities=4% Similarity=-0.070 Sum_probs=31.2
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
..+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+....
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 80 RTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp TTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 46777777765543 3 5666666667777888888888887766544
No 177
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=58.93 E-value=26 Score=20.88 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=33.6
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFI 67 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i 67 (137)
...+..+-+. .++.++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+
T Consensus 63 ~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 63 IDAIKEIMKI-DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp HHHHHHHHHH-CTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 3334444343 346777777766543 3 566666666777888888888877654
No 178
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=58.52 E-value=13 Score=25.49 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=29.3
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+++||++. |+......+...+.+......+|+++...
T Consensus 90 llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~ 127 (173)
T 3kta_B 90 YLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRD 127 (173)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred EEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 47899986 68888888888888877677788888654
No 179
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=57.46 E-value=33 Score=21.58 Aligned_cols=56 Identities=4% Similarity=-0.040 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcc-CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYK-GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 14 ~~~L~~~le~~~-~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
...+..+-+.+. ..+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+.+
T Consensus 77 ~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 77 REVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 344444444321 45677777665542 4 66666667777788888888888876543
No 180
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=56.51 E-value=32 Score=21.19 Aligned_cols=54 Identities=7% Similarity=0.024 Sum_probs=32.6
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 15 LYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 15 ~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
..+..+-+.....+++|+.|..... . ..+..-+.-|-.+|.+.+++...+..+.
T Consensus 69 ~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 125 (133)
T 2r25_B 69 LSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFC 125 (133)
T ss_dssp HHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 3344443333445677777665543 3 5565556667777888888877776643
No 181
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=56.47 E-value=9.3 Score=30.82 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=28.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~ 36 (137)
|+||||++|+.+.......++. .-+..+|+++-.
T Consensus 418 vvlDEA~kmD~~~~~~~~~l~~--~lglQliiatP~ 451 (483)
T 3euj_A 418 LFLDQAARLDAMSINTLFELCE--RLDMQLLIAAPE 451 (483)
T ss_dssp EEESSGGGSCHHHHHHHHHHHH--HTTCEEEEEESS
T ss_pred EEEeccccCCHHHHHHHHHHHH--HcCCEEEEECcc
Confidence 5899999999999999999999 446777777754
No 182
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=56.12 E-value=31 Score=20.94 Aligned_cols=60 Identities=7% Similarity=0.010 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhc-cCCceEEEEeCCCCC-c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcC
Q 042716 13 ALLYMRWLLERY-KGLNKVFFCCSDVSK-L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEG 72 (137)
Q Consensus 13 ~~~~L~~~le~~-~~~~~~Il~~n~~~~-i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~eg 72 (137)
....+..+-+.+ ..++++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+.+..+
T Consensus 62 g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 62 GYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp HHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 344444444432 246788888776543 3 45555555677788999999999988876654
No 183
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=56.08 E-value=6.5 Score=32.38 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=25.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+||||++.++......|++.+ +.++++||.....
T Consensus 266 lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~~ 299 (608)
T 1w36_D 266 LVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRD 299 (608)
T ss_dssp EEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECTT
T ss_pred EEEechhhCCHHHHHHHHHhC---CCCCEEEEEcchh
Confidence 589999988876666665544 6678899988655
No 184
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=56.02 E-value=27 Score=25.91 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=33.3
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcc
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLC 47 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc 47 (137)
+++||... |++.....+...+.+...+..+|++|.+. .+..+-.||
T Consensus 245 lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~-~~~~~~d~~ 291 (322)
T 1e69_A 245 YVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNK-IVMEAADLL 291 (322)
T ss_dssp EEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCT-TGGGGCSEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCH-HHHhhCceE
Confidence 47899876 78888999999988876566688888774 343345555
No 185
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=55.82 E-value=7.7 Score=27.88 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=25.7
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
|+|||++-++++....+..+.+ .+.++|+++-+.
T Consensus 105 ViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 105 IAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQ 138 (214)
T ss_dssp EEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSB
T ss_pred EEEECcccCCHHHHHHHHHHhh---CCCEEEEEeccc
Confidence 5899999999877766655544 378899998733
No 186
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=55.75 E-value=18 Score=18.07 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHcCCcHHHHHHHH
Q 042716 75 LPHQLAEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 75 i~~~~l~~i~~~~~gd~R~aln~L 98 (137)
++.+........++||+-.|++.|
T Consensus 16 f~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 16 FDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 467777788888999999998875
No 187
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=55.61 E-value=13 Score=29.13 Aligned_cols=13 Identities=38% Similarity=0.414 Sum_probs=10.2
Q ss_pred CcccccCcCCHHH
Q 042716 1 IILCEADKLSTDA 13 (137)
Q Consensus 1 iiiDEid~l~~~~ 13 (137)
+||||+|.+....
T Consensus 103 vViDEah~~~~~~ 115 (440)
T 1yks_A 103 IIMDEAHFLDPAS 115 (440)
T ss_dssp EEETTTTCCSHHH
T ss_pred EEEECccccCcch
Confidence 5899999995543
No 188
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=55.41 E-value=22 Score=21.99 Aligned_cols=44 Identities=7% Similarity=0.012 Sum_probs=29.6
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
..+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+.+
T Consensus 91 ~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 91 KKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp GGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 45677777766543 3 55666666666777888888888776554
No 189
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=54.93 E-value=25 Score=21.34 Aligned_cols=43 Identities=9% Similarity=0.018 Sum_probs=29.3
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
.++++|+.|..... . ..+..-+.-|-.+|.+.+++...++++.
T Consensus 75 ~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 75 KRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp TTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 45777777765543 3 5666666667778888888888877653
No 190
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=54.62 E-value=30 Score=21.42 Aligned_cols=47 Identities=11% Similarity=-0.015 Sum_probs=32.5
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcC
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEG 72 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~eg 72 (137)
...++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+.....
T Consensus 77 ~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 77 KTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp TTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred CCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 46777777766543 3 56666666777888899999888887765543
No 191
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=54.38 E-value=29 Score=23.20 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=26.0
Q ss_pred HHHHHHHcCCCCCHHHHHH----HHHHcCCcHHHHHHHH
Q 042716 64 LEFIAEQEGIQLPHQLAEK----IADNSKNNLRQAIRSF 98 (137)
Q Consensus 64 l~~i~~~egi~i~~~~l~~----i~~~~~gd~R~aln~L 98 (137)
+..+++++|+.++++.+.. ++...+.++......+
T Consensus 98 l~~ia~~e~I~vsdeev~~~i~~~A~~y~~~~~~~~~~~ 136 (170)
T 2nsa_A 98 IEVLAQEKGISVNDEELEKEAEELAPFWGISPDRAKSLV 136 (170)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4678999999999988666 5566666777766544
No 192
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=54.30 E-value=8.6 Score=30.66 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=20.6
Q ss_pred CcccccCcCC----HHHHHHHHHHHHhcc----CCceEEEEeCCC
Q 042716 1 IILCEADKLS----TDALLYMRWLLERYK----GLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~----~~~~~~L~~~le~~~----~~~~~Il~~n~~ 37 (137)
+||||+|.|. ......+...+.... .+.++++.+...
T Consensus 230 lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~ 274 (563)
T 3i5x_A 230 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATL 274 (563)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSC
T ss_pred EEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccC
Confidence 5899999985 334444555554322 245555554444
No 193
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=53.50 E-value=37 Score=20.90 Aligned_cols=45 Identities=7% Similarity=0.061 Sum_probs=33.2
Q ss_pred cCCceEEEEeCCCC--Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVS--KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 25 ~~~~~~Il~~n~~~--~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
...+++|+.+.... .. ..+..-+.-+-.+|.+.+++...+..+.+
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 45678888877653 34 67777777777888899999988877654
No 194
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=53.41 E-value=46 Score=22.03 Aligned_cols=52 Identities=19% Similarity=0.112 Sum_probs=36.2
Q ss_pred HHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 17 MRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 17 L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
+.+.+......+++|+.+.+... . ..+..-+.-|-.+|.+.+++...+..+.
T Consensus 69 l~~~~~~~~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~ 123 (196)
T 1qo0_D 69 IAALLAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSAR 123 (196)
T ss_dssp HHHHHHHSCTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHH
T ss_pred HHHHHhccCCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHH
Confidence 66666554367888888776543 4 6666666677788889888888776544
No 195
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=53.35 E-value=38 Score=21.08 Aligned_cols=55 Identities=18% Similarity=0.097 Sum_probs=32.0
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCC--Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVS--KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~--~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
...+..+-+. .+.+++|+.+.... .. ..+..-+.-|-.+|.+.+++...+..+..
T Consensus 65 ~~l~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 65 IELVDNILKL-YPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp HHHHHHHHHH-CTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-CCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3334444333 34678777776553 34 67766677777788899998888876543
No 196
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=52.94 E-value=34 Score=20.41 Aligned_cols=44 Identities=7% Similarity=-0.059 Sum_probs=31.4
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
..+++|+.+..... . ..+..-+.-|-.+|.+.+++...+....+
T Consensus 73 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 73 ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 46777777766543 3 66666666777888899988888876554
No 197
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=52.51 E-value=9.5 Score=30.77 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=20.7
Q ss_pred CcccccCcCC----HHHHHHHHHHHHhcc----CCceEEEEeCCC
Q 042716 1 IILCEADKLS----TDALLYMRWLLERYK----GLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~----~~~~~~L~~~le~~~----~~~~~Il~~n~~ 37 (137)
+|+||+|.|. ......+...+.... .+.++++.+-..
T Consensus 179 lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~ 223 (579)
T 3sqw_A 179 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATL 223 (579)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSC
T ss_pred EEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccC
Confidence 4899999985 334445555554332 244555544433
No 198
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=52.51 E-value=17 Score=28.61 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=10.1
Q ss_pred CcccccCcCCHHH
Q 042716 1 IILCEADKLSTDA 13 (137)
Q Consensus 1 iiiDEid~l~~~~ 13 (137)
|||||+|.++...
T Consensus 116 iViDEaH~~~~~~ 128 (459)
T 2z83_A 116 FVMDEAHFTDPAS 128 (459)
T ss_dssp EEESSTTCCSHHH
T ss_pred EEEECCccCCchh
Confidence 5899999986543
No 199
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=52.39 E-value=39 Score=20.98 Aligned_cols=47 Identities=6% Similarity=-0.084 Sum_probs=32.0
Q ss_pred cCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 25 KGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+....
T Consensus 80 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 80 TASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp TTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 346777777776543 3 5566666667777888888888887765543
No 200
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=52.22 E-value=24 Score=21.46 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcc-CCceEEEEeCCCCC-c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYK-GLNKVFFCCSDVSK-L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 14 ~~~L~~~le~~~-~~~~~Il~~n~~~~-i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
...+..+-+.+. ...++++++..... + ..+..-+.-|-.+|.+.+++...+.....
T Consensus 66 ~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (132)
T 3lte_A 66 LDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVN 124 (132)
T ss_dssp HHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcC
Confidence 333444443332 34455555544333 3 55555566666777777777777766543
No 201
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=51.78 E-value=15 Score=30.82 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=20.9
Q ss_pred CcccccCcCCHHH---HHHHHHHHHhccCCceEEE-EeCCCCCc
Q 042716 1 IILCEADKLSTDA---LLYMRWLLERYKGLNKVFF-CCSDVSKL 40 (137)
Q Consensus 1 iiiDEid~l~~~~---~~~L~~~le~~~~~~~~Il-~~n~~~~i 40 (137)
+||||+|.++... ...+...+. ..+.++++ +++-+..+
T Consensus 336 vViDEaH~~~~~~~~~~~~l~~~~~--~~~~~vl~~SAT~~~~i 377 (673)
T 2wv9_A 336 FVMDEAHFTDPASIAARGYIATRVE--AGEAAAIFMTATPPGTS 377 (673)
T ss_dssp EEEESTTCCCHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTCC
T ss_pred EEEeCCcccCccHHHHHHHHHHhcc--ccCCcEEEEcCCCChhh
Confidence 5899999996653 333333332 24455444 44444444
No 202
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=51.36 E-value=30 Score=22.33 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC--CCcccCccc
Q 042716 62 EVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMN--YPFVEGQVI 114 (137)
Q Consensus 62 ~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~--~~~~~~~~~ 114 (137)
.+++..+...|+.++++++..|.+....-...+-..|...+.-+ ..++.++|.
T Consensus 35 rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~ 89 (113)
T 4dra_A 35 CLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVK 89 (113)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Confidence 44555556678999999999999988766666666666555433 335555554
No 203
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=51.11 E-value=13 Score=21.52 Aligned_cols=29 Identities=14% Similarity=0.494 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042716 58 QEIVEVLEFIAEQEGIQLPHQLAEKIADN 86 (137)
Q Consensus 58 ~~i~~~l~~i~~~egi~i~~~~l~~i~~~ 86 (137)
.++...|...|+++|.+++..+...|.+.
T Consensus 16 ~eLh~~l~~~A~~~GrSlN~~Iv~~L~~~ 44 (64)
T 1nla_A 16 REVLDLVRKVAEENGRSVNSEIYQRVMES 44 (64)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34889999999999999998877776553
No 204
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=50.69 E-value=13 Score=33.02 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=23.2
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
|||||+|+|.... ...+..++...+.+.++++.+-..
T Consensus 294 VVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATi 331 (1108)
T 3l9o_A 294 VIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATI 331 (1108)
T ss_dssp EEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSC
T ss_pred EEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCC
Confidence 5899999997644 333455555556666655554434
No 205
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=50.68 E-value=41 Score=20.68 Aligned_cols=58 Identities=9% Similarity=0.015 Sum_probs=37.7
Q ss_pred HHHHHHHHHh-ccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLER-YKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~-~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+..+-+. ...++++|+.+..... . ..+..-..-|-.+|.+.+++...+..+.+..
T Consensus 67 ~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 67 LEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp HHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred HHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 3344444331 3457888888876643 3 5666666677788889999999988766443
No 206
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=50.19 E-value=27 Score=26.49 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=32.2
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcce
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCT 48 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~ 48 (137)
+++||+.. |++..+..+...+.+......+|++|.++. +..+-.|..
T Consensus 309 lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~~~ 356 (371)
T 3auy_A 309 IILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADVII 356 (371)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSEEE
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCEEE
Confidence 47899886 788889999999987654445777776653 443434433
No 207
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=49.14 E-value=16 Score=19.98 Aligned_cols=35 Identities=14% Similarity=0.419 Sum_probs=25.8
Q ss_pred eEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042716 50 IQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADN 86 (137)
Q Consensus 50 i~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~ 86 (137)
|.++ ++ +++..+|...|+.+|.+++......|.+.
T Consensus 10 ~~lR-lp-~eL~~~l~~~A~~~grS~N~~i~~~L~~~ 44 (53)
T 1baz_A 10 VNLR-WP-REVLDLVRKVAEENGRSVNSEIYQRVMES 44 (53)
T ss_dssp EEEE-CC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred eEEE-CC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4554 33 34889999999999999888776666554
No 208
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=48.59 E-value=9.4 Score=31.27 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=41.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCC-------Cc-hhhhhcceeeEecCCCHH----HHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVS-------KL-QPIKSLCTVIQLLPPSKQ----EIVEVLEFI 67 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~-------~i-~~l~SRc~~i~~~~~~~~----~i~~~l~~i 67 (137)
+||||++.++......|++.+ +.++++||+....+ .+ ..+...+..+.+...-.. .+......+
T Consensus 283 lIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~QL~~v~~g~~~~~l~~~~~~~~L~~~~R~~~~s~I~~~a~~i 358 (574)
T 3e1s_A 283 LIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQLPPVDAGLPLLALAQAAPTIKLTQVYRQAAKNPIIQAAHGL 358 (574)
T ss_dssp EEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTSCCCSSSCCHHHHHHHHSCEEECCCCCHHHHTCHHHHHHHHH
T ss_pred EEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccccCCccCCcHHHHHHhcCCEEEcceeEeCCCccHHHHHHHHH
Confidence 589999999988777776655 46788999986553 23 555555666666554332 344544443
No 209
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=48.59 E-value=22 Score=22.80 Aligned_cols=52 Identities=6% Similarity=0.077 Sum_probs=31.5
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHH
Q 042716 15 LYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFI 67 (137)
Q Consensus 15 ~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i 67 (137)
..+..+-+. ...+++|+.+..... . ..+..-..-|-.+|.+.+++...+..+
T Consensus 100 ~~~~~lr~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 100 TCLSNIMEF-DKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp HHHHHHHHH-CTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHT
T ss_pred HHHHHHHhh-CCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 333333333 356777777766543 3 555555566667777888887777653
No 210
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=48.39 E-value=20 Score=29.67 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=22.6
Q ss_pred CcccccCcCCH----HHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLST----DALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~----~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
||+||+|.+.. .....++..+.....+.++|+.+...+
T Consensus 142 vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~ 183 (702)
T 2p6r_A 142 LVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP 183 (702)
T ss_dssp EEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT
T ss_pred EEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC
Confidence 58999999743 224444444443345677666665544
No 211
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=48.32 E-value=37 Score=20.54 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=30.6
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCC-CHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPP-SKQEIVEVLEFIAE 69 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~-~~~~i~~~l~~i~~ 69 (137)
...+..+-+. ...+++|+.+..... . ..+..-+.-|-.+|. +.+++...+.....
T Consensus 67 ~~~~~~l~~~-~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 67 LKLLEHIRNR-GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp HHHHHHHHHT-TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC
T ss_pred HHHHHHHHhc-CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhc
Confidence 3334433333 346777777766543 3 555555555666666 66777777776554
No 212
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=48.31 E-value=8.8 Score=31.93 Aligned_cols=38 Identities=8% Similarity=0.114 Sum_probs=20.5
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
||+||+|.+.... ...+..++....++.++|+.+...+
T Consensus 142 vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~ 180 (720)
T 2zj8_A 142 LVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIG 180 (720)
T ss_dssp EEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCS
T ss_pred EEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcC
Confidence 5899999885321 2222233333233667666665543
No 213
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=48.26 E-value=20 Score=21.38 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=32.4
Q ss_pred cCCceEEEEeCCCC--Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVS--KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 25 ~~~~~~Il~~n~~~--~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
..++++|+.+.... .. ..++.-+.-|-.+|.+.+++...+..+..
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 73 HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp CTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 44677777766543 34 67777777777888899999988877654
No 214
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=48.21 E-value=41 Score=19.98 Aligned_cols=44 Identities=7% Similarity=-0.023 Sum_probs=29.4
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
..+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+.+
T Consensus 72 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 72 STVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 45777777665543 3 56666666677778888888887766543
No 215
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=47.91 E-value=49 Score=20.71 Aligned_cols=44 Identities=7% Similarity=0.029 Sum_probs=27.9
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
.++++|+.+..... + ..+..-+.-|-.+|.+.+++...+..++.
T Consensus 88 ~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 88 RRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 45666666665543 3 45555555666677777777777776654
No 216
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=47.69 E-value=15 Score=25.95 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=32.2
Q ss_pred CCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 042716 38 SKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQ 78 (137)
Q Consensus 38 ~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~ 78 (137)
..+ +.+..+|. ..+|+.+.+..+|..||+..|++.+++
T Consensus 144 ~~Vn~~iv~kLs---~~~P~~~lv~~yL~EIA~~y~V~w~p~ 182 (191)
T 3frr_A 144 GTVNDRLMHKLS---VEAPPKILVERYLIEIAKNYNVPYEPD 182 (191)
T ss_dssp SCSCHHHHHHTC---CSCCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCcCHHHHHHcC---CCCcCHHHHHHHHHHHHHHcCCCCCCc
Confidence 447 78877774 578999999999999999999998864
No 217
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=47.43 E-value=40 Score=19.91 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=32.1
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
...++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+...
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 71 SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 45777777766543 3 667666777778888999988888776543
No 218
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=47.33 E-value=50 Score=20.71 Aligned_cols=45 Identities=16% Similarity=0.035 Sum_probs=29.1
Q ss_pred cCCceEEEEeCCCCC--c-hhhhhc-ceeeEecCCCHHHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVSK--L-QPIKSL-CTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~--i-~~l~SR-c~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
...+++|+.+..... . ..+..- +.-|-.+|.+.+++...+..+.+
T Consensus 84 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 84 YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 346777777766543 3 555555 55666777788888777766544
No 219
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=47.22 E-value=4.5 Score=32.57 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=20.5
Q ss_pred CcccccCcCCHH------HHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTD------ALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~------~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
|+|||+|.++.- ....|..+.+..+ +.++++.|..+
T Consensus 143 vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~ 184 (523)
T 1oyw_A 143 LAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATA 184 (523)
T ss_dssp EEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCC
T ss_pred EEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCC
Confidence 589999998642 2334445555544 45544444433
No 220
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.02 E-value=44 Score=19.99 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 60 IVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 60 i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
++.-|+ +--|+. +...+..-.+.++||+-.|+.+|-.-
T Consensus 27 lLnQLr---EITGiq-D~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 27 FLNQLR---EITGIN-DAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHH---HHSCCC-CHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHH---HHhCCC-cHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 444444 446775 77889999999999999999888543
No 221
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=46.95 E-value=4.3 Score=31.94 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=22.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
||+||+|.+.... ....+.+...+...++.|+++...
T Consensus 153 vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 153 IVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp EEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCST
T ss_pred EEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCCC
Confidence 5899999995332 223444444444455777776543
No 222
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=46.58 E-value=36 Score=21.39 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=30.4
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 15 LYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 15 ~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
..+..+-+. ...+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+....
T Consensus 67 ~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 67 DGLVRLKRF-DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp HHHHHHHHH-CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHh-CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 333333333 346777777665543 3 5555555556666778888888877765443
No 223
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=46.29 E-value=46 Score=19.95 Aligned_cols=54 Identities=9% Similarity=-0.052 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 13 ALLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 13 ~~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
....+..+-+. ...++|+.+..... . ..+..-+.-|-.+|.+.+++..++....
T Consensus 61 g~~~~~~lr~~--~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 61 GVEVCREVRKK--YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp HHHHHHHHHTT--CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 34444444332 25676666655543 3 5666666677778888888888877654
No 224
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=45.85 E-value=30 Score=20.91 Aligned_cols=43 Identities=5% Similarity=0.025 Sum_probs=24.3
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
..+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+.
T Consensus 80 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (129)
T 1p6q_A 80 KKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVF 125 (129)
T ss_dssp TTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 35566666655432 2 4444444555566667777766666544
No 225
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=45.75 E-value=28 Score=21.36 Aligned_cols=46 Identities=20% Similarity=0.067 Sum_probs=31.6
Q ss_pred cCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
...+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+...
T Consensus 78 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 78 YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 346777777765542 4 666666666777788888888888776543
No 226
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=45.47 E-value=29 Score=28.16 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=43.7
Q ss_pred CcccccCcCCHH----HHHHHHHHHHhccC-CceEEEEeCCCC--Cc-hhhhhcc-eeeEecCCCHHHHHHHHH
Q 042716 1 IILCEADKLSTD----ALLYMRWLLERYKG-LNKVFFCCSDVS--KL-QPIKSLC-TVIQLLPPSKQEIVEVLE 65 (137)
Q Consensus 1 iiiDEid~l~~~----~~~~L~~~le~~~~-~~~~Il~~n~~~--~i-~~l~SRc-~~i~~~~~~~~~i~~~l~ 65 (137)
++|||.+.+... ....+.++...... +.++|++|..+. .+ ..+++.| ..+-|.-.+..+....+.
T Consensus 301 lvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 301 VLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred EEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 479999877543 34445555554333 667888888887 36 7888887 457787777777766653
No 227
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=45.33 E-value=16 Score=21.93 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 55 PSKQEIVEVLEFIAEQEGIQ-LPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 55 ~~~~~i~~~l~~i~~~egi~-i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
+...-+.+++..|+.+.|+. +++++...+...+.--+|.++.-|-..+
T Consensus 3 L~~~~Lqkri~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a 51 (75)
T 1h3o_A 3 LLQAPLQRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETA 51 (75)
T ss_dssp SCHHHHHHHHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44556778899999999995 7788888888878777886665554443
No 228
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=45.23 E-value=5.9 Score=26.96 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=5.3
Q ss_pred CcccccCcCCHH
Q 042716 1 IILCEADKLSTD 12 (137)
Q Consensus 1 iiiDEid~l~~~ 12 (137)
||+||+|.+...
T Consensus 166 iIiDEah~~~~~ 177 (216)
T 3b6e_A 166 IIIDECHHTNKE 177 (216)
T ss_dssp EEETTC------
T ss_pred EEEECchhhccC
Confidence 589999999754
No 229
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=45.19 E-value=55 Score=20.54 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=37.7
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+..+-+. ...+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+....
T Consensus 63 ~~~~~~l~~~-~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 63 LALFRKILAL-DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp HHHHHHHHHH-CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 3344444443 347788888766542 3 6666667777778889999999888766543
No 230
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=45.02 E-value=48 Score=20.26 Aligned_cols=42 Identities=12% Similarity=0.009 Sum_probs=29.7
Q ss_pred CceEEEEeCCCCC--c-hhhhhcceeeEecCC-CHHHHHHHHHHHH
Q 042716 27 LNKVFFCCSDVSK--L-QPIKSLCTVIQLLPP-SKQEIVEVLEFIA 68 (137)
Q Consensus 27 ~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~-~~~~i~~~l~~i~ 68 (137)
.+++|+.+..... . ..+..-+.-|-.+|. +.+++...+..+.
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHT
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHH
Confidence 6788887776643 3 666666666777777 8888888877654
No 231
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=44.87 E-value=53 Score=20.26 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=29.9
Q ss_pred cCCceEEEEeCCCCC--c-hhhhhcceeeEecCC-CHHHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPP-SKQEIVEVLEFIAE 69 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~-~~~~i~~~l~~i~~ 69 (137)
...+++|+.+..... . ..+..-+.-|-.+|. +.+++...+..+.+
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 346777777766543 3 566666666767777 78888887776554
No 232
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=44.65 E-value=56 Score=20.44 Aligned_cols=46 Identities=7% Similarity=-0.042 Sum_probs=28.1
Q ss_pred cCCceEEEEeCCCCC--c-hhhhhc-ceeeEecCCCHHHHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVSK--L-QPIKSL-CTVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~--i-~~l~SR-c~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
...+++|+.+..... . ..+..- +.-|-.+|.+.+++...+..+.+.
T Consensus 74 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 74 SPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp CSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 345666666655433 3 555554 455666777888877777765543
No 233
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=44.58 E-value=6.1 Score=30.78 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=19.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
||+||+|.+....... +++..+....+.|+++-.
T Consensus 196 iIvDEaH~~~~~~~~~---~~~~~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 196 LIFDEVHHLPAESYVQ---IAQMSIAPFRLGLTATFE 229 (472)
T ss_dssp EEEETGGGTTSTTTHH---HHHTCCCSEEEEEESCCC
T ss_pred EEEECCcCCCChHHHH---HHHhcCCCeEEEEecCcc
Confidence 5899999997654443 444334333355555543
No 234
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=44.40 E-value=7.2 Score=30.28 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=21.4
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhc--cCCceEE-EEeCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERY--KGLNKVF-FCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~--~~~~~~I-l~~n~ 36 (137)
+++||+|.|.... ...+.++++.. +....++ ++++-
T Consensus 207 lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 246 (434)
T 2db3_A 207 VVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATF 246 (434)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCC
T ss_pred EEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccC
Confidence 5899999985433 45566776652 2344444 44443
No 235
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=44.40 E-value=13 Score=21.85 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=30.9
Q ss_pred hhhhhcc-eeeEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042716 41 QPIKSLC-TVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADN 86 (137)
Q Consensus 41 ~~l~SRc-~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~ 86 (137)
|..-||. -.|.++-|. ++.+.|...|+++|.+++..++..|.+.
T Consensus 12 ~~~~sr~~~kf~LRlP~--eL~~~L~~~A~~~grSlNaeIv~~Le~s 56 (69)
T 3qoq_A 12 PTYSSRTADKFVVRLPE--GMREQIAEVARSHHRSMNSEIIARLEQS 56 (69)
T ss_dssp -CCCTTTSEEEEEECCT--THHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcccccCCceEEECCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444554 345554443 4889999999999999998887777654
No 236
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=43.92 E-value=53 Score=19.99 Aligned_cols=54 Identities=7% Similarity=0.001 Sum_probs=34.6
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 15 LYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 15 ~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
..+..+-+. ...+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+..
T Consensus 64 ~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 64 ELLEKAHKL-RPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp HHHHHHHHH-CTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-CCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 334433333 346787777766543 3 56666666777788888888888876554
No 237
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=43.31 E-value=45 Score=20.59 Aligned_cols=43 Identities=7% Similarity=0.016 Sum_probs=30.0
Q ss_pred CceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 27 LNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 27 ~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
.+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+..
T Consensus 75 ~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 75 TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 6777777766543 3 66666666777788888888888876543
No 238
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=43.21 E-value=51 Score=19.64 Aligned_cols=43 Identities=9% Similarity=-0.053 Sum_probs=28.5
Q ss_pred cCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFI 67 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i 67 (137)
...+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+
T Consensus 73 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (124)
T 1srr_A 73 DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKY 118 (124)
T ss_dssp CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHH
T ss_pred CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHH
Confidence 346777777765542 3 556655666667788888888777654
No 239
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=41.66 E-value=56 Score=19.58 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=34.7
Q ss_pred HHHHHHHHHhc-cCCceEEEEeCCCCC-c-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERY-KGLNKVFFCCSDVSK-L-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 14 ~~~L~~~le~~-~~~~~~Il~~n~~~~-i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
...+..+-+.+ ...+++|+.+..... . ..+..-+.-|-.+|.+.+++...+.+..
T Consensus 63 ~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 63 LALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp HHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 44444444432 356777777765543 3 5555556667888889999988887644
No 240
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=41.45 E-value=61 Score=19.95 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=32.3
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
..+++|+.+..... + ..+..-+.-|-.+|.+.+++...+..+.+
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 77 SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 46777777765542 4 66666677788888999999988877654
No 241
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=41.40 E-value=76 Score=21.32 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=40.3
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+..+-+.+ ..+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+....
T Consensus 59 ~~~~~~lr~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 59 YEICRMIKETR-PETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp HHHHHHHHHHC-TTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC-CCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 44444444433 57888888776653 4 6777677778788899999999998887654
No 242
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=41.30 E-value=64 Score=20.17 Aligned_cols=44 Identities=9% Similarity=0.005 Sum_probs=28.2
Q ss_pred CCceEEEEeCCCCC--c-hhhhhc-ceeeEecCCCHHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSL-CTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SR-c~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
+.+++|+.+..... . ..+..- +.-+-.+|.+.+++...+..+..
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 78 PDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp TTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 46777777765542 3 455544 55566677788888877776543
No 243
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=41.14 E-value=8.2 Score=29.15 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=21.6
Q ss_pred CcccccCcCCHHH-HHHHHHHHHh--cc--CCceEEEEeCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLER--YK--GLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~--~~--~~~~~Il~~n~~ 37 (137)
||+||+|.+.... ...+..+++. .+ ...++++.+...
T Consensus 179 iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~ 220 (417)
T 2i4i_A 179 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATF 220 (417)
T ss_dssp EEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCC
T ss_pred EEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeC
Confidence 5899999986554 4555666652 11 234555555444
No 244
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=41.13 E-value=39 Score=21.86 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=30.8
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
.++|+|+.|.+... . ..+..-+.-|-.+|.+.+++...+.++.
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 46777777765543 3 6666666778888899999888887654
No 245
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=40.78 E-value=3.5 Score=34.99 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=23.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
||+||+|.+-. ....+.+.+.......++.||++..
T Consensus 371 vIvDEaH~lkn-~~s~~~~~l~~l~~~~rl~LTgTPi 406 (800)
T 3mwy_W 371 MAVDEAHRLKN-AESSLYESLNSFKVANRMLITGTPL 406 (800)
T ss_dssp EEETTGGGGCC-SSSHHHHHHTTSEEEEEEEECSCCC
T ss_pred eehhhhhhhcC-chhHHHHHHHHhhhccEEEeeCCcC
Confidence 58999999942 2223444555555566788887754
No 246
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=40.68 E-value=45 Score=20.19 Aligned_cols=58 Identities=7% Similarity=-0.013 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 13 ALLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 13 ~~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
....+..+-+. .+++++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+.+..
T Consensus 61 g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 61 GIQVLETLRKR-QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp HHHHHHHHHHT-TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhc-CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 34444444443 447788877766643 4 6666666677778889999999988876544
No 247
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=39.76 E-value=65 Score=19.81 Aligned_cols=44 Identities=9% Similarity=-0.028 Sum_probs=28.6
Q ss_pred cCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
...+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+.
T Consensus 74 ~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 120 (137)
T 3cfy_A 74 DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHL 120 (137)
T ss_dssp TCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHH
Confidence 345677777665532 3 5566666666677888888887776654
No 248
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=39.31 E-value=40 Score=17.24 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 042716 73 IQLPHQLAEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 73 i~i~~~~l~~i~~~~~gd~R~aln~L~ 99 (137)
+-++.+........++||+-.|++.|-
T Consensus 14 MGF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 14 MGFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp TTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 345777777788888999999998874
No 249
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=39.19 E-value=58 Score=19.07 Aligned_cols=43 Identities=9% Similarity=-0.071 Sum_probs=26.9
Q ss_pred cCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHH
Q 042716 25 KGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFI 67 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i 67 (137)
....++|+.+.....- ..+..-+.-+-.+|.+.+++...+..+
T Consensus 71 ~~~~~ii~~s~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 71 KKDAKIILLTAYSHYRSDMSSWAADEYVVKSFNFDELKEKVKKL 114 (116)
T ss_dssp CTTCCEEEEESCGGGGGCGGGGGSSEEEECCSSTHHHHHHHHHH
T ss_pred CCCCeEEEEECCcchHHHHHhccccceEECCCCHHHHHHHHHHH
Confidence 3467777777654332 444444455666778888888777653
No 250
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=39.09 E-value=36 Score=19.97 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=27.1
Q ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHH
Q 042716 63 VLEFIAEQEGI-QLPHQLAEKIADNSKNNLRQAIR 96 (137)
Q Consensus 63 ~l~~i~~~egi-~i~~~~l~~i~~~~~gd~R~aln 96 (137)
-++.+++.-|+ .+++++...+++..+--+|.++.
T Consensus 11 ~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~q 45 (70)
T 1taf_B 11 SMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQ 45 (70)
T ss_dssp HHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35667788899 79999999999887777776664
No 251
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=38.81 E-value=8.6 Score=31.86 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=21.0
Q ss_pred CcccccCcCCHHHH-HHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDAL-LYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~~-~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
||+||+|.+..... ..+..++...+ +.++|+.+..++
T Consensus 149 vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~ 186 (715)
T 2va8_A 149 FVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATIS 186 (715)
T ss_dssp EEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCT
T ss_pred EEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCC
Confidence 58999999864222 23333444333 566666655543
No 252
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=38.72 E-value=19 Score=31.61 Aligned_cols=38 Identities=8% Similarity=0.056 Sum_probs=22.1
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
|||||+|.|.... ...+..++...+.+.++++.+-..+
T Consensus 196 VViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~ 234 (1010)
T 2xgj_A 196 VIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIP 234 (1010)
T ss_dssp EEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCT
T ss_pred EEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCC
Confidence 5899999994332 1222333444456677666665554
No 253
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=38.08 E-value=11 Score=29.18 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=38.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhcc-CCceEEEEeCCCCCc---------hhhhhcceeeEecCCC--HHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYK-GLNKVFFCCSDVSKL---------QPIKSLCTVIQLLPPS--KQEIVEVLEFIA 68 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~i---------~~l~SRc~~i~~~~~~--~~~i~~~l~~i~ 68 (137)
+++||++.+..- ..+...+.+.. .+..+++++-+...+ .++.+-|...-|-+.+ +.+-.+++...+
T Consensus 283 ~~lDE~~~l~~~--~~l~~~~~~~R~~g~~~~~~~Qs~~ql~~~yG~~~a~~i~~n~~~~i~~~~~~~d~~ta~~~s~~l 360 (437)
T 1e9r_A 283 LFIDELASLEKL--ASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSLVVLGGSRTDPKTNEDMSLSL 360 (437)
T ss_dssp EEESCGGGSCBC--SSHHHHHHHCTTTTEEEEEEESCHHHHHHHHCHHHHHHHHTTCCEEEEEECCTTCHHHHHHHHHHH
T ss_pred EEEEcccccccc--hhHHHHHHHHhccCCEEEEEecCHHHHHHHHCHHHHHHHHhccCcEEEEeCCCCCHHHHHHHHHHc
Confidence 479999998641 12334444333 356688888766543 5788888543333444 444555555443
No 254
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=37.77 E-value=60 Score=19.31 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=31.1
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
..+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+.+
T Consensus 75 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 75 RDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp TTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 46787777766532 3 55666666677788999999998877654
No 255
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=37.73 E-value=22 Score=27.76 Aligned_cols=12 Identities=25% Similarity=0.384 Sum_probs=9.8
Q ss_pred CcccccCcCCHH
Q 042716 1 IILCEADKLSTD 12 (137)
Q Consensus 1 iiiDEid~l~~~ 12 (137)
||+||+|.+...
T Consensus 131 vViDEah~~~~~ 142 (555)
T 3tbk_A 131 MIFDECHNTSKN 142 (555)
T ss_dssp EEETTGGGCSTT
T ss_pred EEEECccccCCc
Confidence 589999999654
No 256
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=37.20 E-value=69 Score=20.09 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 042716 54 PPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSF 98 (137)
Q Consensus 54 ~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L 98 (137)
.++.+++.-... +-| ++.+.....+..++||+..|+..|
T Consensus 63 ~i~~edi~lv~~----q~~--vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDDIELVMN----QTG--ASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHHH----HHC--CCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHH----HhC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 466666444433 344 456667777788888888887654
No 257
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=36.66 E-value=30 Score=24.93 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=26.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~ 36 (137)
|+|||++-++++....+..+.+ .+.++|+.+-+
T Consensus 105 V~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~GLd 137 (219)
T 3e2i_A 105 IGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAGLD 137 (219)
T ss_dssp EEECCGGGSCTHHHHHHHHHHH---TTCEEEEEEES
T ss_pred EEEechhcCCHHHHHHHHHHHH---CCCEEEEeecc
Confidence 5799999999988888888874 36778877743
No 258
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=36.62 E-value=52 Score=17.83 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHHH
Q 042716 55 PSKQEIVEVLEFIAEQEGIQL-PHQLAEKIADNSKNNLRQAIRSFEA 100 (137)
Q Consensus 55 ~~~~~i~~~l~~i~~~egi~i-~~~~l~~i~~~~~gd~R~aln~L~~ 100 (137)
|+.+.....+.+. ...| + +.+........++||+-.|++.|..
T Consensus 6 ~pe~~~~~~l~~L-~~MG--F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 6 MPEVRFQQQLEQL-NSMG--FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CTHHHHHHHHHHH-HTTT--CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ChhhHHHHHHHHH-HHcC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4445444444432 2344 5 6777777888899999999998853
No 259
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=36.11 E-value=66 Score=18.83 Aligned_cols=44 Identities=9% Similarity=0.008 Sum_probs=29.9
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
...++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+.+
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 71 SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 45777777765543 3 56666666677788888888888876543
No 260
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=35.68 E-value=1e+02 Score=20.79 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=38.6
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCC--Cc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVS--KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~--~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+..+-+. ...+++|+.+.... .. ..+..-+.-|-.+|.+.+++...+..+....
T Consensus 67 ~~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (233)
T 1ys7_A 67 VSVVTALRAM-DNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126 (233)
T ss_dssp HHHHHHHHHT-TCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 3344444443 34678777775543 34 7777777778888999999999998876643
No 261
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=35.67 E-value=11 Score=33.02 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=23.3
Q ss_pred CcccccCcCCHHH-HHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDA-LLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~-~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
|||||+|.+.... ...+..++...+.+.++|+.+-.+
T Consensus 151 vViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~ 188 (997)
T 4a4z_A 151 VIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATV 188 (997)
T ss_dssp EEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCC
T ss_pred EEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCC
Confidence 5899999986543 222445555556677766665554
No 262
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=35.66 E-value=47 Score=26.42 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=32.7
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.+. |+......+...+.+...+..+|++|.++. +-..-.|..++
T Consensus 421 lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~-~~~~~d~~~~~ 470 (517)
T 4ad8_A 421 VVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ-IAARAHHHYKV 470 (517)
T ss_dssp EEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHH-HHHHSSEEEEE
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhCCEEEEE
Confidence 47899886 688888888888777655666888887754 31234444443
No 263
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=35.58 E-value=87 Score=20.99 Aligned_cols=57 Identities=7% Similarity=-0.015 Sum_probs=39.2
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+..+-+. .+.+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+....
T Consensus 62 ~~~~~~lr~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 62 WEILKSMRES-GVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp HHHHHHHHHT-TCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 3444444443 347888888776642 4 6666666677788899999999998877654
No 264
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=35.44 E-value=58 Score=23.81 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=35.8
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhcc--CCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYK--GLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~--~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.= .|++..+..+..++.+.. .+..+|+++.+...+..+-+|..++
T Consensus 165 LlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 165 LILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEE
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4678854 478888888888887653 2567888998887766666665443
No 265
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=35.29 E-value=13 Score=30.58 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=21.8
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVS 38 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~ 38 (137)
||+||+|.+-... ....+.+.......++.||++...
T Consensus 196 vI~DEaH~ikn~~-~~~~~al~~l~~~~rl~LTgTPiq 232 (644)
T 1z3i_X 196 VICDEGHRLKNSD-NQTYLALNSMNAQRRVLISGTPIQ 232 (644)
T ss_dssp EEETTGGGCCTTC-HHHHHHHHHHCCSEEEEECSSCSG
T ss_pred EEEECceecCChh-hHHHHHHHhcccCcEEEEecCccc
Confidence 5899999994321 112233333355667888877553
No 266
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=34.96 E-value=59 Score=17.96 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 73 IQLPHQLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 73 i~i~~~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
+-++.+.+.+-...++||+..|-+.|...
T Consensus 21 mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 21 EGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 44578888889999999999999988643
No 267
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=34.65 E-value=30 Score=25.19 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=24.9
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSD 36 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~ 36 (137)
|+|||++-+.. ...+.+.+.+ .+.++|+++-+
T Consensus 94 ViIDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 94 IGIDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp EEESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred EEEEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 58999999975 5666677764 57789999876
No 268
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=34.09 E-value=20 Score=31.67 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=21.2
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
||+||+|++..+. ....+.+..+....+-||++..
T Consensus 405 vIiDEAHrs~~~~--~~~~I~~~~p~a~~lgfTATP~ 439 (1038)
T 2w00_A 405 FIFDECHRSQFGE--AQKNLKKKFKRYYQFGFTGTPI 439 (1038)
T ss_dssp EEEESCCTTHHHH--HHHHHHHHCSSEEEEEEESSCC
T ss_pred EEEEccchhcchH--HHHHHHHhCCcccEEEEeCCcc
Confidence 5899999986432 2334445445445566676644
No 269
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=34.07 E-value=32 Score=21.78 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042716 57 KQEIVEVLEFIAEQEGIQLPHQLAEKIADN 86 (137)
Q Consensus 57 ~~~i~~~l~~i~~~egi~i~~~~l~~i~~~ 86 (137)
++.+...|+..|+++|+++|.=+-..|.+.
T Consensus 6 EeslY~~LkelAe~EGvSvSav~RkLL~Ey 35 (106)
T 4hv0_A 6 EEEVYEFLKKKAKEEGTSVPAVIRKILKEY 35 (106)
T ss_dssp EHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356788999999999998775443334333
No 270
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=33.90 E-value=81 Score=22.71 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=34.5
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhcc-CCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYK-GLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+...+..+...+.+.. .+..+|+++.+...+..+-.|..++
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l 211 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVL 211 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEE
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46788764 78888888888887763 3556888887776655555665433
No 271
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=33.09 E-value=81 Score=18.99 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=37.6
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+..+-+. ...+++|+.+..... . ..+..-+.-+-.+|.+.+++...+..+....
T Consensus 63 ~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 63 IEVCKQLRQQ-KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp HHHHHHHHHT-TCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcC-CCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 3444444443 346777777665543 4 6677777777788899999999988766543
No 272
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.66 E-value=59 Score=17.27 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHH
Q 042716 75 LPHQLAEKIADNSKNNLRQAIRSFEA 100 (137)
Q Consensus 75 i~~~~l~~i~~~~~gd~R~aln~L~~ 100 (137)
++.+......+.++||+-.|++.|-.
T Consensus 20 F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 20 YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 57888888889999999999988853
No 273
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=32.63 E-value=78 Score=18.65 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=26.9
Q ss_pred CCceEEEEeCCCC--Cc-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVS--KL-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 26 ~~~~~Il~~n~~~--~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
..+++|+.+.... .. ..+..-+.-|-.+|.+.+++...+....
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1mb3_A 74 AHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 119 (124)
T ss_dssp TTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 4567777766543 23 5666666667777888888888877654
No 274
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=31.78 E-value=1.4e+02 Score=21.92 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=60.5
Q ss_pred ccCcCCHHHHHHHH-HHHHhccCCceEEEEeCCCCC-----c-hhhhhc-c--ee---eEecCCCHHHHHHHHHHHHHH-
Q 042716 5 EADKLSTDALLYMR-WLLERYKGLNKVFFCCSDVSK-----L-QPIKSL-C--TV---IQLLPPSKQEIVEVLEFIAEQ- 70 (137)
Q Consensus 5 Eid~l~~~~~~~L~-~~le~~~~~~~~Il~~n~~~~-----i-~~l~SR-c--~~---i~~~~~~~~~i~~~l~~i~~~- 70 (137)
|...|+.+-...+. .+.|...+..++|.-+...+- + +.-..- + .. =.+.+++++.+..+.+.+++.
T Consensus 46 E~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~ 125 (292)
T 2vc6_A 46 ESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAAS 125 (292)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 56677777655554 445555566777765544321 1 111111 1 11 123357999999999999876
Q ss_pred ------------cCCCCCHHHHHHHHH-H--------cCCcHHHHHHHHHH
Q 042716 71 ------------EGIQLPHQLAEKIAD-N--------SKNNLRQAIRSFEA 100 (137)
Q Consensus 71 ------------egi~i~~~~l~~i~~-~--------~~gd~R~aln~L~~ 100 (137)
-|++++++.+..+++ + +.||+.+...+++.
T Consensus 126 ~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK~s~gd~~~~~~~~~~ 176 (292)
T 2vc6_A 126 TIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDATGNLLRPSLERMA 176 (292)
T ss_dssp SSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECSCCTHHHHHHHHH
T ss_pred CCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEEecCCCCHHHHHHHHHH
Confidence 367899999999987 2 55898877766654
No 275
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=31.50 E-value=48 Score=19.69 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 042716 54 PPSKQEIVEVLEFIAEQEGIQLPHQLAE 81 (137)
Q Consensus 54 ~~~~~~i~~~l~~i~~~egi~i~~~~l~ 81 (137)
|+|++.+.+.|. ++|+.+....+.
T Consensus 37 PlSD~~I~~~L~----~~Gi~IaRRTVa 60 (76)
T 2ahq_A 37 PYSDQEIANILK----EKGFKVARRTVA 60 (76)
T ss_dssp CCCHHHHHHHHT----TTSSCCCHHHHH
T ss_pred CCCHHHHHHHHH----HcCCCccHHHHH
Confidence 566666666653 356666655443
No 276
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=31.33 E-value=60 Score=25.18 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=23.2
Q ss_pred CcccccCcCC--HHHHHHHHHHHHhccCCceEEEEeCCC
Q 042716 1 IILCEADKLS--TDALLYMRWLLERYKGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~--~~~~~~L~~~le~~~~~~~~Il~~n~~ 37 (137)
+++||++.+. .+...++...+-. ..+..++++++..
T Consensus 277 viiDE~a~~~~~~el~~al~~~ls~-~~~~kiiiiSTP~ 314 (385)
T 2o0j_A 277 IYIEDCAFIPNFHDSWLAIQPVISS-GRRSKIIITTTPN 314 (385)
T ss_dssp EEEESGGGSTTHHHHHHHHHHHHHS-TTCCEEEEEECCC
T ss_pred EEechhhhcCCCHHHHHHHHHHhhc-CCCCcEEEEeCCC
Confidence 4799999997 5667777766642 1245566665543
No 277
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=31.29 E-value=69 Score=21.00 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=36.0
Q ss_pred HHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHH
Q 042716 15 LYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 15 ~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~ 68 (137)
..+..+-+. ...+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+.
T Consensus 68 ~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 68 SLIAPLCDL-QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp HHHHHHHHH-CTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred HHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 334444333 347788888776653 4 6777777778888999999888886544
No 278
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=31.27 E-value=43 Score=19.98 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=26.8
Q ss_pred eEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042716 50 IQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADN 86 (137)
Q Consensus 50 i~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~ 86 (137)
+.++.+++ ++...|+..|.+.|.+++.++...+...
T Consensus 3 ltIRnlpd-~~~~~Lk~rAa~~GrSle~e~r~iL~~a 38 (77)
T 2bsq_E 3 VVIRNLSE-ATHNAIKFRARAAGRSTEAEIRLILDNI 38 (77)
T ss_dssp EEECSCCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ceecCCCH-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34455555 4889999999999999998876665544
No 279
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=30.99 E-value=72 Score=22.84 Aligned_cols=49 Identities=8% Similarity=-0.097 Sum_probs=33.5
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhhhhccee
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPIKSLCTV 49 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l~SRc~~ 49 (137)
+++||.= .|++..+..+...+.+... +..+|+++.+...+..+-.|..+
T Consensus 175 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~ 225 (257)
T 1g6h_A 175 IVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYV 225 (257)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEE
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 4677764 4788888888888877533 56688888877665555566543
No 280
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=30.88 E-value=35 Score=28.96 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=18.3
Q ss_pred CcccccCc--CCHHHHHH-HHHHHHhccCCceEEEE-eCC
Q 042716 1 IILCEADK--LSTDALLY-MRWLLERYKGLNKVFFC-CSD 36 (137)
Q Consensus 1 iiiDEid~--l~~~~~~~-L~~~le~~~~~~~~Il~-~n~ 36 (137)
|||||+|. +..+.... +..+.... +..++|+. ++-
T Consensus 212 lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~ 250 (773)
T 2xau_A 212 IILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATL 250 (773)
T ss_dssp EEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCS
T ss_pred EEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccc
Confidence 58999995 44343333 44444433 34454444 443
No 281
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=30.86 E-value=20 Score=28.07 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=9.7
Q ss_pred CcccccCcCCHH
Q 042716 1 IILCEADKLSTD 12 (137)
Q Consensus 1 iiiDEid~l~~~ 12 (137)
||+||+|.+...
T Consensus 134 vViDEah~~~~~ 145 (556)
T 4a2p_A 134 MIFDECHNTTGN 145 (556)
T ss_dssp EEEETGGGCSTT
T ss_pred EEEECCcccCCc
Confidence 589999999643
No 282
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.85 E-value=72 Score=17.70 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=25.5
Q ss_pred HHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 67 IAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 67 i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.....|+. +.+.-..+.+.++||+-.++..|-...
T Consensus 15 ~L~eMGF~-D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 15 HLFEMGFC-DRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHTCC-CHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred HHHHcCCC-cHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 34567773 566666788889999999988875543
No 283
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=30.82 E-value=25 Score=27.05 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=41.4
Q ss_pred cccccC------cCCHHHHHHHHHHHHhccCCceEEEEeCCCCC--c-hhh---hhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 2 ILCEAD------KLSTDALLYMRWLLERYKGLNKVFFCCSDVSK--L-QPI---KSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 2 iiDEid------~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l---~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
|+||+. .-++..+..+++.|.+ .+--.+|+++..-.+ + ++= .+.+. .| ..++++.+...|+
T Consensus 38 fld~~~~d~~~qnWd~~eW~~~~~~mK~-~GikyvIl~~~~~~gf~~~pS~~~~~~~~~-----~p-~~Dlv~~~l~aa~ 110 (340)
T 4h41_A 38 FLDEISHDIPHQNWGEKEWDLDFQHMKR-IGIDTVIMIRSGYRKFMTYPSPYLLKKGCY-----MP-SVDLVDMYLRLAE 110 (340)
T ss_dssp EECTTCSSSCCCCCCHHHHHHHHHHHHH-TTCCEEEESCSEETTEESSCCHHHHHTTCC-----CC-SBCHHHHHHHHHH
T ss_pred EehhhcCCCcccCCCHHHHHHHHHHHHH-cCCCEEEEEEEeeCCeeccCcccccccCcc-----CC-cccHHHHHHHHHH
Confidence 678876 6788899998888865 344557776654433 2 211 11121 12 3457777778889
Q ss_pred HcCCC
Q 042716 70 QEGIQ 74 (137)
Q Consensus 70 ~egi~ 74 (137)
+.|++
T Consensus 111 k~Gmk 115 (340)
T 4h41_A 111 KYNMK 115 (340)
T ss_dssp HTTCE
T ss_pred HhCCe
Confidence 99886
No 284
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.55 E-value=85 Score=18.41 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 042716 73 IQLPHQLAEKIADNSKNNLRQAIRSFEA 100 (137)
Q Consensus 73 i~i~~~~l~~i~~~~~gd~R~aln~L~~ 100 (137)
+-++.+.....++.+++|+-.|++.|..
T Consensus 39 MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 39 MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3468888888889999999999988853
No 285
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=30.31 E-value=53 Score=25.02 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=35.0
Q ss_pred EecCC-CHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCccc
Q 042716 51 QLLPP-SKQEIVEVLEFIAEQEGI--------QLPHQLAEKIADNSKNNLRQAIRSFEASRQMNYPFVE 110 (137)
Q Consensus 51 ~~~~~-~~~~i~~~l~~i~~~egi--------~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~~~~~ 110 (137)
.|.+. .+.++...+...++.+|. .++|.... +....|.|+++..|+.....+.++++
T Consensus 113 ~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~---~i~pnd~~Ri~RALEV~~~TG~~~S~ 178 (322)
T 3exa_A 113 NLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAA---AIHPNNYRRVIRALEIIKLTGKTVTE 178 (322)
T ss_dssp CCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHT---TSCTTCHHHHHHHHHHHHHTC-----
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHh---hcCcccHHHHHHHHHHHHHHCCCHHH
Confidence 45444 455688888887777774 23333222 23678999999999998877766543
No 286
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=30.30 E-value=69 Score=17.27 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=21.6
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~ 99 (137)
..|+. +.+........++||+-.|++.|-
T Consensus 21 ~MGF~-~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 21 AMGFL-NREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HTTCC-CHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HcCCC-CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35541 666777778888899999998873
No 287
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=29.63 E-value=59 Score=29.38 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=34.6
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhh-cceeeEec----CCCHHHHHHHHHHH
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKS-LCTVIQLL----PPSKQEIVEVLEFI 67 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~S-Rc~~i~~~----~~~~~~i~~~l~~i 67 (137)
|+||+++. .+.... ++.++++|+||.+..-...+.. +...+.++ +++.++....+...
T Consensus 248 LVLDDVwd--~eqLe~-------f~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~ 310 (1221)
T 1vt4_I 248 LVLLNVQN--AKAWNA-------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310 (1221)
T ss_dssp EEEESCCC--HHHHHH-------HHSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH
T ss_pred EEEeCcCh--HHHHHh-------hCCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH
Confidence 47888887 222222 2367889998887643232211 12233433 89999998888765
No 288
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=29.40 E-value=98 Score=18.76 Aligned_cols=48 Identities=4% Similarity=-0.043 Sum_probs=30.9
Q ss_pred cCCceEEEEeCCCCC---c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcC
Q 042716 25 KGLNKVFFCCSDVSK---L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEG 72 (137)
Q Consensus 25 ~~~~~~Il~~n~~~~---i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~eg 72 (137)
...+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+.++..
T Consensus 78 ~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 78 TRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp GTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 356777777765532 1 33344445566777888888888887766553
No 289
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=29.34 E-value=1.8e+02 Score=21.89 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=39.3
Q ss_pred HHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcC
Q 042716 16 YMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEG 72 (137)
Q Consensus 16 ~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~eg 72 (137)
.+..+-+. ...+++|+.|.+... . ..+..-+.-|-.+|.+.+++...+.++.....
T Consensus 62 ll~~lr~~-~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 62 FIDFIKEN-SPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp HHHHHHHH-CTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 33344333 346788877766543 4 77777777888899999999999988776543
No 290
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=29.08 E-value=11 Score=28.66 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=8.0
Q ss_pred CcccccCcCC
Q 042716 1 IILCEADKLS 10 (137)
Q Consensus 1 iiiDEid~l~ 10 (137)
||+||+|.+.
T Consensus 143 iViDEaH~~~ 152 (414)
T 3oiy_A 143 VFVDDVDAVL 152 (414)
T ss_dssp EEESCHHHHH
T ss_pred EEEeChHhhh
Confidence 5899998764
No 291
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=28.49 E-value=37 Score=23.89 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=21.5
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCceEEEEeC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNKVFFCCS 35 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~~Il~~n 35 (137)
|+|||++=+ ++....+..+.+ .+.++|+++=
T Consensus 95 IlIDEaQFf-k~~ve~~~~L~~---~gk~VI~~GL 125 (195)
T 1w4r_A 95 IGIDEGQFF-PDIVEFCEAMAN---AGKTVIVAAL 125 (195)
T ss_dssp EEESSGGGC-TTHHHHHHHHHH---TTCEEEEEEE
T ss_pred EEEEchhhh-HHHHHHHHHHHH---CCCeEEEEec
Confidence 579999999 665555555554 4667888874
No 292
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=27.90 E-value=85 Score=19.07 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=28.2
Q ss_pred ccCCceEEEEe-CCCCC--chhhhhcceeeEecCCCHHHHHHHHHHHHHHcCC
Q 042716 24 YKGLNKVFFCC-SDVSK--LQPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGI 73 (137)
Q Consensus 24 ~~~~~~~Il~~-n~~~~--i~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi 73 (137)
....+++|+.+ ..... ...+ +.-+-.+|.+.+++...+..+....|.
T Consensus 85 ~~~~~~ii~ls~~~~~~~~~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~~~ 134 (138)
T 2b4a_A 85 QTKQPSVLILTTGRHELIESSEH---NLSYLQKPFAISELRAAIDYHKPSMGV 134 (138)
T ss_dssp SSSCCEEEEEESCC--CCCCSSS---CEEEEESSCCHHHHHHHHHHTCCC---
T ss_pred hCCCCCEEEEECCCCCHHHHHHH---HHheeeCCCCHHHHHHHHHHHHHhcCC
Confidence 34467888877 54432 2233 556667788999999888776544443
No 293
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=27.54 E-value=74 Score=16.73 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=21.5
Q ss_pred HHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 042716 69 EQEGIQLPHQLAEKIADNSKNNLRQAIRSFE 99 (137)
Q Consensus 69 ~~egi~i~~~~l~~i~~~~~gd~R~aln~L~ 99 (137)
...|+. +.+........++||+-.|+..|-
T Consensus 15 ~~MGF~-d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 15 NDMGFF-DFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHTTCC-CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCC-cHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345652 455556777888999999998873
No 294
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=27.52 E-value=92 Score=17.85 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=24.3
Q ss_pred HHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 68 AEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 68 ~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
.++-|.. ......-+..++||+-.|+..|+.-.
T Consensus 17 Re~TGag--~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 17 RRKTGYS--FVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp HHHHCCC--HHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHhCCC--HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3445654 44567777789999999999998654
No 295
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=27.35 E-value=44 Score=28.10 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=9.9
Q ss_pred CcccccCcCCHH
Q 042716 1 IILCEADKLSTD 12 (137)
Q Consensus 1 iiiDEid~l~~~ 12 (137)
||+||+|.+...
T Consensus 375 iViDEaH~~~~~ 386 (797)
T 4a2q_A 375 MIFDECHNTTGN 386 (797)
T ss_dssp EEETTGGGCSTT
T ss_pred EEEECccccCCC
Confidence 589999999654
No 296
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=27.32 E-value=99 Score=20.47 Aligned_cols=54 Identities=6% Similarity=0.045 Sum_probs=34.4
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
...+..+-+.++ .++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+..
T Consensus 74 ~~~~~~l~~~~~--~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 74 IDAASEIASKRI--APIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp HHHHHHHHHTTC--SCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 344444444332 377777665432 3 66666667777788999999888876553
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=27.04 E-value=63 Score=22.63 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhccCCceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 9 LSTDALLYMRWLLERYKGLNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 9 l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
|+......+++.+. ....+++++-+...+ ..|+.|. .-+.+++..++..
T Consensus 115 LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~Rl~~rG------~~~~e~i~~rl~~ 164 (219)
T 1s96_A 115 IDWQGAQQIRQKMP---HARSIFILPPSKIELDRRLRGRG------QDSEEVIAKRMAQ 164 (219)
T ss_dssp CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHHHHHTTS------CSCHHHHHHHHHH
T ss_pred ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHHHHHHcC------CCCHHHHHHHHHH
Confidence 66666666666654 233444444444445 5555554 2345666666654
No 298
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=26.94 E-value=1.1e+02 Score=18.53 Aligned_cols=43 Identities=9% Similarity=0.021 Sum_probs=24.4
Q ss_pred CCceEEEEeCCCCC--c-hhhhhc-ceeeEecCCCHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSL-CTVIQLLPPSKQEIVEVLEFIA 68 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SR-c~~i~~~~~~~~~i~~~l~~i~ 68 (137)
..+++|+.+..... . ..+..- +.-|-.+|.+.+++...+.+..
T Consensus 91 ~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~ 137 (146)
T 3ilh_A 91 NKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVL 137 (146)
T ss_dssp TTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHH
Confidence 45566666555433 2 444444 4456666677777777766544
No 299
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=26.93 E-value=49 Score=21.57 Aligned_cols=28 Identities=14% Similarity=0.494 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042716 59 EIVEVLEFIAEQEGIQLPHQLAEKIADN 86 (137)
Q Consensus 59 ~i~~~l~~i~~~egi~i~~~~l~~i~~~ 86 (137)
++...+...|+++|.+++..+...|.+.
T Consensus 28 eLh~~La~~Ak~eGrSLN~eIv~~Le~s 55 (120)
T 1u9p_A 28 EVLDLVRKVAEENGRSVNSEIYQRVMES 55 (120)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4889999999999999999888777765
No 300
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=26.85 E-value=1.2e+02 Score=19.73 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=26.6
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhccC-CceEEEEeCCC
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYKG-LNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~~-~~~~Il~~n~~ 37 (137)
+++||.- +|+......+...+.+... +..+|+++.+.
T Consensus 85 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 123 (148)
T 1f2t_B 85 LILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 123 (148)
T ss_dssp EEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence 4678854 4788888888888887543 45577777765
No 301
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=26.70 E-value=58 Score=17.09 Aligned_cols=20 Identities=30% Similarity=0.332 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcCCCCCH
Q 042716 58 QEIVEVLEFIAEQEGIQLPH 77 (137)
Q Consensus 58 ~~i~~~l~~i~~~egi~i~~ 77 (137)
+++...|...|++.|++.+.
T Consensus 18 ~el~~~l~~~a~~~g~s~s~ 37 (55)
T 2k9i_A 18 QEWHDRLMEIAKEKNLTLSD 37 (55)
T ss_dssp HHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHH
Confidence 45788899999999987554
No 302
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=26.31 E-value=1.3e+02 Score=20.44 Aligned_cols=55 Identities=11% Similarity=0.034 Sum_probs=37.0
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
...+..+-+. + .+++|+.+..... + ..+..-+.-|-.+|.+.+++...+..+...
T Consensus 65 ~~~~~~lr~~-~-~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 65 IDVCRVLRAD-S-GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp HHHHHHHHTT-C-CCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhC-C-CCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 3344444443 3 6777777655433 4 777777777878899999999999876543
No 303
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=26.28 E-value=1.3e+02 Score=20.67 Aligned_cols=58 Identities=17% Similarity=0.025 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 13 ALLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 13 ~~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
....+..+-+. ...+++|+.+..... . ..+..-+.-|-.+|.+.+++..++..+.+..
T Consensus 82 g~~~~~~lr~~-~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 82 GFGVLRRLRAD-GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp HHHHHHHHHHT-TCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 34444444443 346777777765543 4 6777777778888999999999998887654
No 304
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.15 E-value=68 Score=18.98 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=27.5
Q ss_pred cCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 71 EGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 71 egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
+==++++.++...+...+++.+.++.+|+.-+
T Consensus 20 rFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES 51 (75)
T 2dae_A 20 KFPEVPEVVVSRCMLQNNNNLDACCAVLSQES 51 (75)
T ss_dssp HSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHH
T ss_pred hcccCcHHHHHHHHHHhccCHHHHHHHHHHhc
Confidence 33478999999999999999999999998765
No 305
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=25.98 E-value=94 Score=22.09 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=32.5
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC-CceEEEEeCCCCCchhh-hhcce
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG-LNKVFFCCSDVSKLQPI-KSLCT 48 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~-~~~~Il~~n~~~~i~~l-~SRc~ 48 (137)
+++||.-. |+...+..+...+.+... +..+|+++.+...+..+ -.|..
T Consensus 165 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~ 215 (250)
T 2d2e_A 165 AVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVH 215 (250)
T ss_dssp EEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEE
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEE
Confidence 46788654 788889999888887643 45678887765544444 25554
No 306
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=25.92 E-value=71 Score=21.37 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC--CCcccCccc
Q 042716 62 EVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMN--YPFVEGQVI 114 (137)
Q Consensus 62 ~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~--~~~~~~~~~ 114 (137)
+++...+...|+.++++++..|.+....-...+-..|+..+.-. ..++.+++.
T Consensus 27 kIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVk 81 (140)
T 3vh5_A 27 ALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVK 81 (140)
T ss_dssp HHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Confidence 44455556678999999999999988766666666666554433 335555554
No 307
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=25.83 E-value=1.2e+02 Score=18.43 Aligned_cols=41 Identities=10% Similarity=-0.063 Sum_probs=26.2
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEF 66 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~ 66 (137)
..+++|+.+..... . ..++.-+.-+-.+|.+.+++...+..
T Consensus 88 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 88 TDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp TTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred cCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 46677777765543 3 55555566666677777777777554
No 308
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=25.82 E-value=38 Score=24.36 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=33.3
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC--CceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG--LNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~--~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.-. |+...+..+...+.+... +..+|+++.+...+..+-.|..++
T Consensus 150 llLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l 202 (253)
T 2nq2_C 150 ILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLL 202 (253)
T ss_dssp EEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 46788765 788888888888877643 456788877654444444554443
No 309
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=25.69 E-value=69 Score=24.68 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=27.6
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccC-CceEEEEeCCC
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKG-LNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~-~~~~Il~~n~~ 37 (137)
+++||++. |+......+...+.+... +..+|++|.+.
T Consensus 359 lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~ 397 (430)
T 1w1w_A 359 FVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN 397 (430)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH
T ss_pred EEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH
Confidence 47899886 678888889888887543 45678887653
No 310
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=25.36 E-value=1.1e+02 Score=22.14 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=33.1
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhccCCceEEEEeCCCCCchhhhh-ccee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYKGLNKVFFCCSDVSKLQPIKS-LCTV 49 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~~~~~~Il~~n~~~~i~~l~S-Rc~~ 49 (137)
+++||.-. |+...+..+...+.+... .+|+++.+...+..+-. |...
T Consensus 150 llLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~ 198 (263)
T 2pjz_A 150 VGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYF 198 (263)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEE
T ss_pred EEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEE
Confidence 46788654 788899999999987755 67888877655545555 5443
No 311
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=25.27 E-value=1.7e+02 Score=20.24 Aligned_cols=56 Identities=7% Similarity=-0.037 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHH
Q 042716 13 ALLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 13 ~~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
....+..+-+ ...+++|+.+..... + ..+..-+.-|-.+|.+.+++..++..+...
T Consensus 96 G~~l~~~lr~--~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 96 GGDVVQRLRK--NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp HHHHHHHHHT--TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHc--CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 3444444444 346787777766643 4 677777777888899999999999887653
No 312
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.06 E-value=92 Score=16.99 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=22.0
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
..|+. +.+........++||+-.|++.|-..
T Consensus 18 ~MGF~-d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 18 SMGFL-NREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHTCC-CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HcCCC-cHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45753 33444667778899999999988654
No 313
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=24.78 E-value=1e+02 Score=19.49 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC--CCcccCccc
Q 042716 63 VLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMN--YPFVEGQVI 114 (137)
Q Consensus 63 ~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~--~~~~~~~~~ 114 (137)
+++..+...|..++++++..+.+....-...+..-+...+.-. ..++.+++.
T Consensus 28 I~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~ 81 (107)
T 3b0b_B 28 LCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVK 81 (107)
T ss_dssp HHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHH
Confidence 3344445556789999999999887655565666665544322 235555554
No 314
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=24.76 E-value=20 Score=21.87 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccC---Cce-EEEEeCCCCC--chhhhhcce-eeEec-CCCHHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYKG---LNK-VFFCCSDVSK--LQPIKSLCT-VIQLL-PPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 14 ~~~L~~~le~~~~---~~~-~Il~~n~~~~--i~~l~SRc~-~i~~~-~~~~~~i~~~l~~i~~~ 70 (137)
...|.+.+|++.+ +.. +|+.+|+..- -+.|..... .++-+ -.+.++...|++...+.
T Consensus 35 edelkkyleefrkesqnikvlilvsndeeldkakelaqkmeidvrtrkvtspdeakrwikefsee 99 (110)
T 2kpo_A 35 EDELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDVRTRKVTSPDEAKRWIKEFSEE 99 (110)
T ss_dssp HHHHHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceeeeeeecCChHHHHHHHHHHhhc
Confidence 5668888888754 333 6777776531 133333321 12222 34566777777765543
No 315
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=24.68 E-value=1.6e+02 Score=19.54 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=38.2
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~e 71 (137)
...+..+-+. ...+++|+.+..... . ..+..-+.-|-.+|.+.+++...+..+....
T Consensus 67 ~~~~~~lr~~-~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 67 LETLDKLREK-SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp HHHHHHHHHS-CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHh-CCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 3444444443 346777777765543 4 6666666677788889999999998877644
No 316
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=24.66 E-value=10 Score=31.12 Aligned_cols=11 Identities=27% Similarity=0.117 Sum_probs=9.2
Q ss_pred CcccccCcCCH
Q 042716 1 IILCEADKLST 11 (137)
Q Consensus 1 iiiDEid~l~~ 11 (137)
|+|||+|.++.
T Consensus 169 iViDEAH~is~ 179 (591)
T 2v1x_A 169 IAVDEVHCCSQ 179 (591)
T ss_dssp EEEETGGGGST
T ss_pred EEEECcccccc
Confidence 58999999864
No 317
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=24.41 E-value=71 Score=19.62 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=29.2
Q ss_pred cCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCC--CcccCccc
Q 042716 71 EGIQLPHQLAEKIADNSKNNLRQAIRSFEASRQMNY--PFVEGQVI 114 (137)
Q Consensus 71 egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~~~~~--~~~~~~~~ 114 (137)
.|+.++++++..+.+....-....-.-|+..+.-+. .++.+++.
T Consensus 29 ~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~ 74 (90)
T 3v9r_A 29 EDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLM 74 (90)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred cCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Confidence 378999999999998887666666666665544332 34444443
No 318
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=24.21 E-value=31 Score=28.15 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=9.7
Q ss_pred CcccccCcCCHH
Q 042716 1 IILCEADKLSTD 12 (137)
Q Consensus 1 iiiDEid~l~~~ 12 (137)
||+||+|.+...
T Consensus 140 vViDEaH~~~~~ 151 (696)
T 2ykg_A 140 MIFDECHNTSKQ 151 (696)
T ss_dssp EEEETGGGCSTT
T ss_pred EEEeCCCcccCc
Confidence 589999998644
No 319
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=24.14 E-value=65 Score=28.68 Aligned_cols=33 Identities=6% Similarity=0.154 Sum_probs=20.0
Q ss_pred CcccccCcCCHHHHHHHHHHHHhccCCce-EEEEeCCC
Q 042716 1 IILCEADKLSTDALLYMRWLLERYKGLNK-VFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~~~~~~~L~~~le~~~~~~~-~Il~~n~~ 37 (137)
+|+||+|.+.......+... ..+.. +.|+++-.
T Consensus 729 vIiDEaH~~g~~~~~~l~~l----~~~~~vl~lSATp~ 762 (1151)
T 2eyq_A 729 LIVDEEHRFGVRHKERIKAM----RANVDILTLTATPI 762 (1151)
T ss_dssp EEEESGGGSCHHHHHHHHHH----HTTSEEEEEESSCC
T ss_pred EEEechHhcChHHHHHHHHh----cCCCCEEEEcCCCC
Confidence 58999999987654444333 33454 55555533
No 320
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=23.97 E-value=84 Score=16.46 Aligned_cols=32 Identities=25% Similarity=0.172 Sum_probs=20.6
Q ss_pred hcceeeEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q 042716 45 SLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLPHQ 78 (137)
Q Consensus 45 SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~~~ 78 (137)
.|...+.| .+++++ ...|...|+..|+.+++-
T Consensus 13 ~r~~~i~v-Rlt~eE-~~~l~~~A~~~g~s~Sey 44 (51)
T 2ba3_A 13 QKTVVRTL-RFSPVE-DETIRKKAEDSGLTVSAY 44 (51)
T ss_dssp CCSEEEEE-EECHHH-HHHHHHHHHHHTCCHHHH
T ss_pred cCceeEEE-EECHHH-HHHHHHHHHHhCCCHHHH
Confidence 44555666 355554 566778888899875543
No 321
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.64 E-value=1.1e+02 Score=17.28 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=21.1
Q ss_pred cCCCCCHHHHHHHHHHcCC-cHHHHHHHHH
Q 042716 71 EGIQLPHQLAEKIADNSKN-NLRQAIRSFE 99 (137)
Q Consensus 71 egi~i~~~~l~~i~~~~~g-d~R~aln~L~ 99 (137)
.|+ +.+.....+..++| |+-.|++.|-
T Consensus 29 MGF--~~~~a~~AL~~t~~~nve~A~ewL~ 56 (64)
T 2cpw_A 29 MGF--PRARAQKALASTGGRSVQTACDWLF 56 (64)
T ss_dssp HTC--CHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred cCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 465 67777777788887 9999998884
No 322
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=23.08 E-value=18 Score=29.80 Aligned_cols=13 Identities=46% Similarity=0.440 Sum_probs=10.3
Q ss_pred CcccccCcCCHHH
Q 042716 1 IILCEADKLSTDA 13 (137)
Q Consensus 1 iiiDEid~l~~~~ 13 (137)
+|+||+|+|...+
T Consensus 208 vI~DEAHNL~d~a 220 (620)
T 4a15_A 208 IILDEAHNLPDIG 220 (620)
T ss_dssp EEETTGGGHHHHH
T ss_pred EEEECCCchHHHH
Confidence 5899999996554
No 323
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=23.00 E-value=23 Score=19.78 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 042716 74 QLPHQLAEKIADNSKNNLRQAIRSFEA 100 (137)
Q Consensus 74 ~i~~~~l~~i~~~~~gd~R~aln~L~~ 100 (137)
+++.+++..++...+|++-.+++.|-.
T Consensus 25 ~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 25 DMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp TSCHHHHHHHHHHSCC--CGGGC----
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 688999999999999999888877643
No 324
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=22.99 E-value=1.1e+02 Score=17.02 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHH
Q 042716 54 PPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADN-SKNNLRQAIR 96 (137)
Q Consensus 54 ~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~-~~gd~R~aln 96 (137)
.|+.+++.+.++ .-|+++++.-...+++. .+.|+...+.
T Consensus 16 ~~t~~~I~~il~----aaGveve~~~~~~~~~~L~gk~i~elI~ 55 (58)
T 3a1y_A 16 EINEENLKAVLQ----AAGVEPEEARIKALVAALEGVNIDEVIE 55 (58)
T ss_dssp CCCHHHHHHHHH----HTTCCCCHHHHHHHHHHHSSCCHHHHHH
T ss_pred CCCHHHHHHHHH----HcCCCccHHHHHHHHHHHCCCCHHHHHH
Confidence 577777666665 47999999888887764 6667777663
No 325
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=22.86 E-value=2e+02 Score=20.03 Aligned_cols=44 Identities=16% Similarity=-0.005 Sum_probs=30.4
Q ss_pred CCceEEEEeCCCCC--c-hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 26 GLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 26 ~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
.++++|+.+.+... . ..+..-+.-|-.+|.+.+++...+...+.
T Consensus 200 ~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 200 LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 36787777766543 3 55556666677788888888888876554
No 326
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.85 E-value=58 Score=23.07 Aligned_cols=47 Identities=4% Similarity=0.034 Sum_probs=31.1
Q ss_pred CcccccC-cCCHHHHHHHHHHHHhcc-CCceEEEEeCCCCCchhhhhcc
Q 042716 1 IILCEAD-KLSTDALLYMRWLLERYK-GLNKVFFCCSDVSKLQPIKSLC 47 (137)
Q Consensus 1 iiiDEid-~l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~i~~l~SRc 47 (137)
+++||.- .|++..+..+...+.+.. .+..+|+++.+...+..+-.|.
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v 209 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYG 209 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEE
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 4677765 478888888888887754 3556888887654434444444
No 327
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=22.62 E-value=1e+02 Score=20.60 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=18.8
Q ss_pred CcccccCcCC---HHHHHHHHHHHHhc--cCCceEEEEeCCC
Q 042716 1 IILCEADKLS---TDALLYMRWLLERY--KGLNKVFFCCSDV 37 (137)
Q Consensus 1 iiiDEid~l~---~~~~~~L~~~le~~--~~~~~~Il~~n~~ 37 (137)
++|||...+. +..+..+...+.+. ..++.+++++...
T Consensus 127 lilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 127 LVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp EEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred EEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4788888653 22233333333322 2356777777665
No 328
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=22.54 E-value=1.8e+02 Score=20.88 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=38.6
Q ss_pred eEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 50 IQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 50 i~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
=+|.+.+..+....+.......| +.+..+..|++.|..+.-.|..++.++.
T Consensus 149 ~rFSKfkn~EAv~aVrELL~~~g--LheFEiAqLANLcPeTaDEARALIPSL~ 199 (221)
T 3hou_D 149 TNFSRFRDQETVGAVIQLLKSTG--LHPFEVAQLGSLACDTADEAKTLIPSLN 199 (221)
T ss_dssp HHSCSCCCHHHHHHHHHHHTTSC--CCHHHHHHHHHSCCCSHHHHHHHCTTCT
T ss_pred HHhcCCCcHHHHHHHHHHHHhcC--CChHHhheecccCCCCHHHHHHHHHhhc
Confidence 34556667777777777766654 5788889999999999998888776654
No 329
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=22.42 E-value=81 Score=18.61 Aligned_cols=37 Identities=14% Similarity=0.316 Sum_probs=26.9
Q ss_pred eEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Q 042716 50 IQLLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNS 87 (137)
Q Consensus 50 i~~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~ 87 (137)
+.++.++++ +...|+..|+..|.+.+......+...+
T Consensus 4 i~IRnvpde-v~~~L~~rAa~~G~S~~~ylr~~Le~~a 40 (73)
T 3h87_C 4 VLIRDIPDD-VLASLDAIAARLGLSRTEYIRRRLAQDA 40 (73)
T ss_dssp CCCCCCCHH-HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred eeecCCCHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 455666665 6888999999999988877666665543
No 330
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=22.23 E-value=1.6e+02 Score=18.72 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=37.2
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 042716 52 LLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKNNLRQAIRSFEASR 102 (137)
Q Consensus 52 ~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~gd~R~aln~L~~~~ 102 (137)
+.|++.++.+.++..+-+.-|+ +.+.+..++....|-.-.....|.+-.
T Consensus 2 ~~~~treDrigiv~gif~~Dgl--s~~dv~~LVd~Fp~QsiDFFGALRsR~ 50 (107)
T 3thg_A 2 IDPFTREDRIGVCKGIFRTDNV--ADDDIVKLVDTFPGQSIDFFGALRARV 50 (107)
T ss_dssp --CCCHHHHHHHHHHHTTTTTC--CHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 4688999999999888777765 588899999999887666666665544
No 331
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=22.02 E-value=62 Score=27.95 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=9.9
Q ss_pred CcccccCcCCHH
Q 042716 1 IILCEADKLSTD 12 (137)
Q Consensus 1 iiiDEid~l~~~ 12 (137)
||+||+|.+...
T Consensus 375 iViDEaH~~~~~ 386 (936)
T 4a2w_A 375 MIFDECHNTTGN 386 (936)
T ss_dssp EEEETGGGCSTT
T ss_pred EEEECccccCCC
Confidence 589999999654
No 332
>1mnt_A MNT repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=21.97 E-value=81 Score=18.55 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042716 58 QEIVEVLEFIAEQEGIQLPHQLAEKIADN 86 (137)
Q Consensus 58 ~~i~~~l~~i~~~egi~i~~~~l~~i~~~ 86 (137)
.++..+|...|..+|.+++..+...|-+.
T Consensus 13 ~eLh~~L~~~A~~~grSlN~~I~~~L~~a 41 (76)
T 1mnt_A 13 MEVREKLKFRAEANGRSMNSELLQIVQDA 41 (76)
T ss_dssp HHHHHHHHHTHHHHTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34888999999999999988766655543
No 333
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=21.90 E-value=1.4e+02 Score=18.05 Aligned_cols=56 Identities=9% Similarity=0.010 Sum_probs=32.0
Q ss_pred HHHHHHHHHhc-cCCceEEEEeCCCCCc-hhhhhc--ceeeEecCCCHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERY-KGLNKVFFCCSDVSKL-QPIKSL--CTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 14 ~~~L~~~le~~-~~~~~~Il~~n~~~~i-~~l~SR--c~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
...+..+-+.+ ...+++|+.+...... ...... +.-|-.+|.+.+++...+..+..
T Consensus 63 ~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~ 122 (138)
T 3c3m_A 63 WETLERIKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLA 122 (138)
T ss_dssp HHHHHHHHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCcccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHH
Confidence 33344443332 2467788777766543 333333 23566677788888888876553
No 334
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.84 E-value=1.2e+02 Score=17.80 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=22.2
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 042716 70 QEGIQLPHQLAEKIADNSKNNLRQAIRSFEA 100 (137)
Q Consensus 70 ~egi~i~~~~l~~i~~~~~gd~R~aln~L~~ 100 (137)
..|+. +.+.....+..++||+..|+..|-.
T Consensus 38 eMGF~-dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 38 ALGFA-NRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHTCC-CHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HcCCC-cHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45762 4566667778899999999988853
No 335
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=21.78 E-value=42 Score=23.68 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=27.7
Q ss_pred c-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcCCCCC
Q 042716 40 L-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEGIQLP 76 (137)
Q Consensus 40 i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~egi~i~ 76 (137)
+ +.+..+| ...+|+.+.+..+|..||+..|++.+
T Consensus 151 Vn~kiv~kL---s~~~P~~elv~~yL~EIA~ey~V~w~ 185 (193)
T 3ggy_A 151 VPEKIIKKC---SPSVPKEELVDLYLKEIAKTYDVPYS 185 (193)
T ss_dssp CCHHHHHHH---SCCCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHc---CCCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 6 6666665 45789999999999999999998755
No 336
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=21.75 E-value=1.4e+02 Score=18.02 Aligned_cols=56 Identities=9% Similarity=0.019 Sum_probs=34.6
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhc-ceeeEecCCCHHHHHHHHHHHHHH
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSL-CTVIQLLPPSKQEIVEVLEFIAEQ 70 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SR-c~~i~~~~~~~~~i~~~l~~i~~~ 70 (137)
...+..+-+. ...+++|+.+..... . ..+..- +.-|-.+|.+.+++...+..+...
T Consensus 60 ~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 119 (139)
T 2jk1_A 60 VDFLTEVRER-WPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARM 119 (139)
T ss_dssp HHHHHHHHHH-CTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHH
Confidence 3344444443 346777777765543 3 555543 556777888999988888776543
No 337
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.19 E-value=1.2e+02 Score=17.02 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 042716 73 IQLPHQLAEKIADNSKNNLRQAIRSFEAS 101 (137)
Q Consensus 73 i~i~~~~l~~i~~~~~gd~R~aln~L~~~ 101 (137)
+-++.+.....+..+++|+-.|++.|-.-
T Consensus 19 MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 19 MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 34577777788888999999999998654
No 338
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=21.17 E-value=1.4e+02 Score=17.70 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhccCCceEEEEeCCCCCc--------hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 12 DALLYMRWLLERYKGLNKVFFCCSDVSKL--------QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 12 ~~~~~L~~~le~~~~~~~~Il~~n~~~~i--------~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
++...+..+-+. ...+++|+.+...... ..+..-+.-+-.+|.+.+++...+.++..
T Consensus 60 ~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~ 124 (135)
T 3eqz_A 60 DGIEVIRHLAEH-KSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSN 124 (135)
T ss_dssp HHHHHHHHHHHT-TCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHhC-CCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHh
Confidence 344444444443 4578888888776531 23333344667788899999988887543
No 339
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=20.64 E-value=2e+02 Score=19.17 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=38.7
Q ss_pred HHHHHHHHHhccCCceEEEEeCCCCC--c-hhhhhcceeeEecCC-CHHHHHHHHHHHHHHc
Q 042716 14 LLYMRWLLERYKGLNKVFFCCSDVSK--L-QPIKSLCTVIQLLPP-SKQEIVEVLEFIAEQE 71 (137)
Q Consensus 14 ~~~L~~~le~~~~~~~~Il~~n~~~~--i-~~l~SRc~~i~~~~~-~~~~i~~~l~~i~~~e 71 (137)
...+..+-+. +..+++|+.+..... . ..+..-+.-|-.+|. +.+++...+..+....
T Consensus 56 ~~~~~~lr~~-~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 56 LSFVSRIKEK-HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp HHHHHHHHHH-CTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred HHHHHHHHhC-CCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 3444444444 337888888876543 4 667666777777788 9999999998876543
No 340
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=20.40 E-value=2.3e+02 Score=19.83 Aligned_cols=57 Identities=18% Similarity=0.093 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcc-CCceEEEEeCCCC-Cc--hhhhhcceeeEecCCCHHHHHHHHHHHHH
Q 042716 13 ALLYMRWLLERYK-GLNKVFFCCSDVS-KL--QPIKSLCTVIQLLPPSKQEIVEVLEFIAE 69 (137)
Q Consensus 13 ~~~~L~~~le~~~-~~~~~Il~~n~~~-~i--~~l~SRc~~i~~~~~~~~~i~~~l~~i~~ 69 (137)
....+..+-+.++ ..+++|+.+.+.. .. ..+..-+.-|-.+|.+.+++..++.+..+
T Consensus 184 G~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 184 GISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp HHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHH
Confidence 3455555555443 3567776665443 33 56666667788889999999888877554
No 341
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=20.31 E-value=22 Score=21.35 Aligned_cols=44 Identities=11% Similarity=0.168 Sum_probs=26.5
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CcHHHHHH
Q 042716 52 LLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSK----NNLRQAIR 96 (137)
Q Consensus 52 ~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~----gd~R~aln 96 (137)
-.||+.++...+|+..+++..+. ++-.+..|++.+. .|+..+.+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHH
Confidence 35788888888888777655432 1222566666553 35555444
No 342
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=20.10 E-value=49 Score=23.87 Aligned_cols=50 Identities=6% Similarity=0.126 Sum_probs=32.5
Q ss_pred CcccccCc-CCHHHHHHHHHHHHhcc-CCceEEEEeCCCCCchhhhhcceee
Q 042716 1 IILCEADK-LSTDALLYMRWLLERYK-GLNKVFFCCSDVSKLQPIKSLCTVI 50 (137)
Q Consensus 1 iiiDEid~-l~~~~~~~L~~~le~~~-~~~~~Il~~n~~~~i~~l~SRc~~i 50 (137)
+++||.=. |+...+..+...+.+.. .+..+|+++.+...+..+-.|..++
T Consensus 175 llLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 226 (262)
T 1b0u_A 175 LLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL 226 (262)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46788654 78888888888877653 2456788877654444555555433
No 343
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=20.07 E-value=72 Score=18.94 Aligned_cols=49 Identities=12% Similarity=0.000 Sum_probs=31.0
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHH
Q 042716 52 LLPPSKQEIVEVLEFIAEQEGIQLPHQLAEKIADNSKN-NLRQAIRSFEAS 101 (137)
Q Consensus 52 ~~~~~~~~i~~~l~~i~~~egi~i~~~~l~~i~~~~~g-d~R~aln~L~~~ 101 (137)
|.+.+..+....+-...+..| ..+...+..-...+.. .+|+.+..|+.-
T Consensus 4 ~~~~~~~~~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le~e 53 (79)
T 1xmk_A 4 MASLDMAEIKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMERQ 53 (79)
T ss_dssp TTSHHHHHHHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHHT
T ss_pred cccccchhHHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHHHC
Confidence 455555666666666666676 4555555555555666 778888877754
No 344
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=20.02 E-value=62 Score=23.53 Aligned_cols=46 Identities=11% Similarity=-0.042 Sum_probs=33.4
Q ss_pred CceEEEEeCCCCCc-hhhhhcceeeEecCCCHHHHHHHHHHHHHHcC
Q 042716 27 LNKVFFCCSDVSKL-QPIKSLCTVIQLLPPSKQEIVEVLEFIAEQEG 72 (137)
Q Consensus 27 ~~~~Il~~n~~~~i-~~l~SRc~~i~~~~~~~~~i~~~l~~i~~~eg 72 (137)
++|+|+.|.+.... ..+..=+.-|-.+|.+.+++...+.......+
T Consensus 233 ~~piI~lT~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 233 DVPVIFITAFPERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp TCCEEEEESCGGGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 78888888776544 55544445577788899999999988776543
Done!