Your job contains 1 sequence.
>042717
ATQIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFEN
FWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNT
RIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQ
AQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGV
ILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRR
LFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGL
AAGQFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETP
EEFNSNKGVQSSRNLVNAQNSIAEKSNTTSQEEAISRFPMNWLQKLREKWPRIL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042717
(474 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2008291 - symbol:AT1G51310 "AT1G51310" species... 1814 4.4e-187 1
TIGR_CMR|SO_2633 - symbol:SO_2633 "tRNA (5-methylaminomet... 642 6.9e-63 1
UNIPROTKB|Q9KSX8 - symbol:mnmA "tRNA-specific 2-thiouridy... 635 3.8e-62 1
TIGR_CMR|VC_1128 - symbol:VC_1128 "tRNA (5-methylaminomet... 635 3.8e-62 1
UNIPROTKB|P25745 - symbol:mnmA "tRNA-specific 2-thiouridy... 624 5.5e-61 1
TIGR_CMR|BA_4625 - symbol:BA_4625 "tRNA (5-methylaminomet... 619 1.9e-60 1
TIGR_CMR|CPS_2900 - symbol:CPS_2900 "tRNA (5-methylaminom... 618 2.4e-60 1
UNIPROTKB|O75648 - symbol:TRMU "Mitochondrial tRNA-specif... 357 3.8e-58 2
UNIPROTKB|E2QS09 - symbol:TRMU "Uncharacterized protein" ... 350 2.6e-57 2
UNIPROTKB|F6V9U0 - symbol:TRMU "Uncharacterized protein" ... 350 2.6e-57 2
UNIPROTKB|Q5ZKW0 - symbol:TRMU "Mitochondrial tRNA-specif... 331 6.9e-57 2
TIGR_CMR|CBU_1147 - symbol:CBU_1147 "tRNA (5-methylaminom... 584 9.6e-57 1
UNIPROTKB|F1N2P9 - symbol:TRMU "Uncharacterized protein" ... 347 2.3e-56 2
UNIPROTKB|F1SM74 - symbol:TRMU "Uncharacterized protein" ... 350 2.6e-51 2
FB|FBgn0040337 - symbol:CG3021 species:7227 "Drosophila m... 497 1.6e-47 1
TIGR_CMR|CHY_2197 - symbol:CHY_2197 "tRNA (5-methylaminom... 487 1.8e-46 1
TIGR_CMR|GSU_2569 - symbol:GSU_2569 "tRNA (5-methylaminom... 468 1.9e-44 1
DICTYBASE|DDB_G0288979 - symbol:trmu "tRNA (5-methylamino... 428 3.3e-40 1
POMBASE|SPAC23H4.04 - symbol:SPAC23H4.04 "mitochondrial t... 428 3.3e-40 1
WB|WBGene00007114 - symbol:B0035.16 species:6239 "Caenorh... 423 1.1e-39 1
CGD|CAL0003878 - symbol:orf19.7245 species:5476 "Candida ... 412 1.6e-38 1
TIGR_CMR|NSE_0468 - symbol:NSE_0468 "tRNA (5-methylaminom... 411 2.1e-38 1
RGD|1311229 - symbol:Trmu "tRNA 5-methylaminomethyl-2-thi... 255 1.0e-37 2
TIGR_CMR|DET_0779 - symbol:DET_0779 "tRNA (5-methylaminom... 402 1.9e-37 1
TIGR_CMR|ECH_0872 - symbol:ECH_0872 "tRNA (5-methylaminom... 379 5.1e-35 1
TIGR_CMR|CJE_0048 - symbol:CJE_0048 "tRNA (5-methylaminom... 360 5.2e-33 1
TIGR_CMR|APH_0910 - symbol:APH_0910 "tRNA (5-methylaminom... 358 8.5e-33 1
SGD|S000002191 - symbol:SLM3 "tRNA-specific 2-thiouridyla... 351 4.7e-32 1
TIGR_CMR|SPO_1677 - symbol:SPO_1677 "tRNA (5-methylaminom... 348 9.8e-32 1
MGI|MGI:1919276 - symbol:Trmu "tRNA 5-methylaminomethyl-2... 346 1.6e-31 1
UNIPROTKB|H9KZX8 - symbol:H9KZX8 "Uncharacterized protein... 249 1.9e-29 2
ZFIN|ZDB-GENE-050522-540 - symbol:trmu "tRNA 5-methylamin... 310 1.7e-27 1
UNIPROTKB|B4DZN5 - symbol:TRMU "Mitochondrial tRNA-specif... 196 7.8e-15 1
UNIPROTKB|Q2PPL5 - symbol:TRMU "Mitochondrial 5-methylami... 126 3.0e-07 1
>TAIR|locus:2008291 [details] [associations]
symbol:AT1G51310 "AT1G51310" species:3702 "Arabidopsis
thaliana" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=ISS] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0016740
"transferase activity" evidence=IEA] HAMAP:MF_00144
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054 EMBL:CP002684
GO:GO:0005737 GO:GO:0008033 GO:GO:0008168 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 KO:K00566 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 OMA:QPGNIET IPI:IPI00548497
RefSeq:NP_175542.2 UniGene:At.37843 ProteinModelPortal:F4I824
SMR:F4I824 PRIDE:F4I824 EnsemblPlants:AT1G51310.1 GeneID:841554
KEGG:ath:AT1G51310 Uniprot:F4I824
Length = 497
Score = 1814 (643.6 bits), Expect = 4.4e-187, P = 4.4e-187
Identities = 340/436 (77%), Positives = 378/436 (86%)
Query: 4 IEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWT 63
I +YLSCSMP +K L+VAVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQE FENFW
Sbjct: 68 IVDQYLSCSMP-EKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWN 126
Query: 64 ECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIK 123
+CPWE+D+KYAK VC+QVDVPLEVVHLTDEYW+ VVSYIIEEYRCGRTPNPDVLCNTRIK
Sbjct: 127 QCPWEDDLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIK 186
Query: 124 FGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQL 183
FGAFMDAIS ME+DYV SGHYAKVVH ADQ SVLELS+D VKDQTYFLSHLSQ QL
Sbjct: 187 FGAFMDAISDMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQL 246
Query: 184 KRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILE 243
KRL+FPLGC+ K+EVRK ATQFDLPNKDRKDSQGICFLGKIKFS+FV RHIGEMEG+ILE
Sbjct: 247 KRLLFPLGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILE 306
Query: 244 AETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
AE+GDFLG H GFWFYTIGQRQGLRLPGGPWYVVEKD KNNVVFVSRNYYS DK+RR+FR
Sbjct: 307 AESGDFLGNHRGFWFYTIGQRQGLRLPGGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFR 366
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
VGSL+W SG P ++ L+CKVRHGPGFY+C+ +E DG ++AVV L EDDQGLAAG
Sbjct: 367 VGSLRWNSGKPSGKVRELRCKVRHGPGFYSCSFEMEG--DG--DVAVVHLDEDDQGLAAG 422
Query: 364 QFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEF 423
QFAAFY+GT CIGSGVILESWDDQ FPVC KAL++A +EDK+KLGKP+KI P T
Sbjct: 423 QFAAFYEGTTCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKIMTMP-TMSSV 481
Query: 424 NSNKGVQSS-RNLVNA 438
++ G S+ + LVNA
Sbjct: 482 EADTGEASAEQKLVNA 497
>TIGR_CMR|SO_2633 [details] [associations]
symbol:SO_2633 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0008757 "S-adenosylmethionine-dependent methyltransferase
activity" evidence=ISS] HAMAP:MF_00144 InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 GO:GO:0005524 GO:GO:0005737
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482
KO:K00566 ProtClustDB:PRK00143 Gene3D:2.30.30.280 PANTHER:PTHR11933
TIGRFAMs:TIGR00420 HOGENOM:HOG000218046 OMA:QPGNIET
RefSeq:NP_718217.1 ProteinModelPortal:Q8CX40 SMR:Q8CX40
GeneID:1170335 KEGG:son:SO_2633 PATRIC:23524893 Uniprot:Q8CX40
Length = 372
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 143/374 (38%), Positives = 205/374 (54%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D E + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNEDGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A Q L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHEVREIAKQMGLITHDKKDSTGICFIGERKFTEFLGNYLPAQPGNI-ETADGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD+K NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMLVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P S++ K R+ C L +++D N V E + GQ A
Sbjct: 298 LHWVDRKGPINGSQIVVKTRYRQQDIPCTLT--YLDD---NTLKVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>UNIPROTKB|Q9KSX8 [details] [associations]
symbol:mnmA "tRNA-specific 2-thiouridylase MnmA"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
eggNOG:COG0482 KO:K00566 ProtClustDB:PRK00143 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 OMA:QPGNIET PIR:C82237
RefSeq:NP_230773.1 ProteinModelPortal:Q9KSX8 SMR:Q9KSX8
DNASU:2614398 GeneID:2614398 KEGG:vch:VC1128 PATRIC:20081348
GO:GO:0004808 Uniprot:Q9KSX8
Length = 372
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 142/371 (38%), Positives = 206/371 (55%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 70 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEV 186
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 245
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNY-YSFDKKRRLFRVGSLKWLS 311
+T+GQR+GL + G PWYV +KD+K NV+ + + K L L W+
Sbjct: 246 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLV-AAQLHWVD 304
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
P E R K R+ C ++ + D + I V+ E + GQ A FYQG
Sbjct: 305 RTPITEPVRCSVKTRYRQSDIACTII--PLSD--DRIKVM-FDEPQVAVTPGQSAVFYQG 359
Query: 372 TRCIGSGVILE 382
C+G G+I E
Sbjct: 360 EICLGGGIIEE 370
>TIGR_CMR|VC_1128 [details] [associations]
symbol:VC_1128 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
eggNOG:COG0482 KO:K00566 ProtClustDB:PRK00143 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 OMA:QPGNIET PIR:C82237
RefSeq:NP_230773.1 ProteinModelPortal:Q9KSX8 SMR:Q9KSX8
DNASU:2614398 GeneID:2614398 KEGG:vch:VC1128 PATRIC:20081348
GO:GO:0004808 Uniprot:Q9KSX8
Length = 372
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 142/371 (38%), Positives = 206/371 (55%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 70 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEV 186
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 245
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNY-YSFDKKRRLFRVGSLKWLS 311
+T+GQR+GL + G PWYV +KD+K NV+ + + K L L W+
Sbjct: 246 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLV-AAQLHWVD 304
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
P E R K R+ C ++ + D + I V+ E + GQ A FYQG
Sbjct: 305 RTPITEPVRCSVKTRYRQSDIACTII--PLSD--DRIKVM-FDEPQVAVTPGQSAVFYQG 359
Query: 372 TRCIGSGVILE 382
C+G G+I E
Sbjct: 360 EICLGGGIIEE 370
>UNIPROTKB|P25745 [details] [associations]
symbol:mnmA "tRNA-specific 2-thiouridylase" species:83333
"Escherichia coli K-12" [GO:0002143 "tRNA wobble position uridine
thiolation" evidence=IMP;IDA] [GO:0016783 "sulfurtransferase
activity" evidence=IEA;IDA] [GO:0000049 "tRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] HAMAP:MF_00144
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0000049 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 GO:GO:0002143 EMBL:X59307
EMBL:M74924 eggNOG:COG0482 KO:K00566 ProtClustDB:PRK00143
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 OMA:QPGNIET PIR:B64858 RefSeq:NP_415651.4
RefSeq:YP_489401.1 PDB:2DER PDB:2DET PDB:2DEU PDBsum:2DER
PDBsum:2DET PDBsum:2DEU ProteinModelPortal:P25745 SMR:P25745
DIP:DIP-11035N IntAct:P25745 PaxDb:P25745 PRIDE:P25745
EnsemblBacteria:EBESCT00000001280 EnsemblBacteria:EBESCT00000014469
GeneID:12934135 GeneID:945690 KEGG:ecj:Y75_p1103 KEGG:eco:b1133
PATRIC:32117515 EchoBASE:EB1320 EcoGene:EG11344
BioCyc:EcoCyc:EG11344-MONOMER BioCyc:ECOL316407:JW1119-MONOMER
BioCyc:MetaCyc:EG11344-MONOMER EvolutionaryTrace:P25745
Genevestigator:P25745 Uniprot:P25745
Length = 368
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 143/372 (38%), Positives = 209/372 (56%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG---G---PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>TIGR_CMR|BA_4625 [details] [associations]
symbol:BA_4625 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482
KO:K00566 ProtClustDB:PRK00143 Gene3D:2.30.30.280 PANTHER:PTHR11933
TIGRFAMs:TIGR00420 RefSeq:NP_846843.1 RefSeq:YP_021273.1
RefSeq:YP_030539.1 ProteinModelPortal:Q81JE5 SMR:Q81JE5
IntAct:Q81JE5 DNASU:1085347 EnsemblBacteria:EBBACT00000012454
EnsemblBacteria:EBBACT00000016216 EnsemblBacteria:EBBACT00000020864
GeneID:1085347 GeneID:2815268 GeneID:2848709 KEGG:ban:BA_4625
KEGG:bar:GBAA_4625 KEGG:bat:BAS4291 HOGENOM:HOG000218046
OMA:QPGNIET BioCyc:BANT260799:GJAJ-4347-MONOMER
BioCyc:BANT261594:GJ7F-4496-MONOMER Uniprot:Q81JE5
Length = 371
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 139/375 (37%), Positives = 208/375 (55%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK +L D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAYM--DGEYK--MLR-GVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYS---FDKKRRLFRVGSL 307
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ + + VG
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG-- 290
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+S E+ + K R+ N + + D EN + E + + GQ
Sbjct: 291 -WVSNEAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVV 344
Query: 368 FYQGTRCIGSGVILE 382
FY G C+G I E
Sbjct: 345 FYDGDECLGGATIDE 359
>TIGR_CMR|CPS_2900 [details] [associations]
symbol:CPS_2900 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 KO:K00566 ProtClustDB:PRK00143
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 RefSeq:YP_269601.1 ProteinModelPortal:Q480B8
STRING:Q480B8 GeneID:3522033 KEGG:cps:CPS_2900 PATRIC:21468825
OMA:IFCNQRI BioCyc:CPSY167879:GI48-2950-MONOMER Uniprot:Q480B8
Length = 375
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 139/372 (37%), Positives = 209/372 (56%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D++ A+A+CD
Sbjct: 14 KVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDTDEY---CAASQDLEDAQAICD 70
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++D+ L ++ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A + DY
Sbjct: 71 KLDIKLHTINFATEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFACEDLGADY 130
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY V D +K + L D KDQ+YFL L +AQL +FP+G I K EV
Sbjct: 131 IATGHY--VQRELRDNSWK-MIRGL--DNNKDQSYFLYTLDEAQLAHTLFPVGHIEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + L ++KDS GICF+G+ KF +F+ +++ G+I AE G +G H G +
Sbjct: 186 RAIAEKAGLITHNKKDSTGICFIGERKFKDFLGQYLPAQPGIIESAE-GVAVGHHDGLMY 244
Query: 259 YTIGQRQGLRLPG----G--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL-KWLS 311
+T+GQR+GLR+ G G PWYVVEKD+ NV+ V + + RLF G + L
Sbjct: 245 HTLGQRKGLRIGGLADAGEEPWYVVEKDLLRNVLIVGQGH----NHPRLFSKGLIANQLH 300
Query: 312 GLPPEEI-SRLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
+ + + S +QC K R+ +C + + D + +E + GQ F
Sbjct: 301 WVDRKALTSSIQCTVKTRYRQEDVSCT--VTPITDSATEEYQIDFTEQQSSVTPGQSVVF 358
Query: 369 YQGTRCIGSGVI 380
Y+ C+G G+I
Sbjct: 359 YKDDVCLGGGII 370
>UNIPROTKB|O75648 [details] [associations]
symbol:TRMU "Mitochondrial tRNA-specific 2-thiouridylase 1"
species:9606 "Homo sapiens" [GO:0016783 "sulfurtransferase
activity" evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=NAS] [GO:0006399 "tRNA metabolic process" evidence=NAS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0008033 "tRNA
processing" evidence=NAS] InterPro:IPR004506 InterPro:IPR023382
Pfam:PF03054 GO:GO:0005739 GO:GO:0005524 EMBL:CH471138
GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729 EMBL:AL031588
Orphanet:90641 GO:GO:0016783 MIM:580000 UniGene:Hs.439524
eggNOG:COG0482 KO:K00566 OMA:HASEKKH Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 GO:GO:0004808 CTD:55687
HOVERGEN:HBG108157 EMBL:AY062123 EMBL:AF448221 EMBL:AB178028
EMBL:CR456445 EMBL:AK001002 EMBL:AK290712 EMBL:BC027991
EMBL:BC080631 IPI:IPI00026555 IPI:IPI00514782 IPI:IPI00807637
IPI:IPI00903061 IPI:IPI00909385 RefSeq:NP_060476.2
ProteinModelPortal:O75648 SMR:O75648 IntAct:O75648 STRING:O75648
PhosphoSite:O75648 PaxDb:O75648 PRIDE:O75648 DNASU:55687
Ensembl:ENST00000290846 Ensembl:ENST00000381019
Ensembl:ENST00000457572 GeneID:55687 KEGG:hsa:55687 UCSC:uc003bhp.3
UCSC:uc003bhq.3 UCSC:uc003bhs.3 UCSC:uc003bhv.3
GeneCards:GC22P046726 HGNC:HGNC:25481 HPA:HPA035273 MIM:610230
MIM:613070 neXtProt:NX_O75648 Orphanet:217371 Orphanet:254864
PharmGKB:PA142670701 InParanoid:O75648 PhylomeDB:O75648
BRENDA:2.1.1.61 ChiTaRS:TRMU GenomeRNAi:55687 NextBio:60489
ArrayExpress:O75648 Bgee:O75648 CleanEx:HS_TRMT1 CleanEx:HS_TRMU
Genevestigator:O75648 GermOnline:ENSG00000100416 Uniprot:O75648
Length = 421
Score = 357 (130.7 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 85/222 (38%), Positives = 120/222 (54%)
Query: 166 DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK-DRKDSQGICFLGKI 224
D KDQT+FLS +SQ L+R IFPLG ++KE V+K A + L + +K+S G+CF+GK
Sbjct: 168 DSFKDQTFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKR 227
Query: 225 KFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNN 284
F F+ +++ G + E LG H G++ YT+GQR + PWYVVEKD
Sbjct: 228 NFEHFLLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKG 287
Query: 285 VVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIE 339
VFV+ R L R + W++ PP + R ++C + RH C L +
Sbjct: 288 DVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN 347
Query: 340 HVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
+DG + VQ + LA GQFA FY+G C+GSG IL
Sbjct: 348 --QDGTVWVTAVQAV---RALATGQFAVFYKGDECLGSGKIL 384
Score = 258 (95.9 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 65/188 (34%), Positives = 96/188 (51%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V LSGGVDS+VA LL G+ T ++K W D C ++D + A VC
Sbjct: 7 VVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGV---CTADKDCEDAYRVCQI 63
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYV 139
+D+P V EYW +V S + EY GRTPNPD++CN IKF F A+ ++ D +
Sbjct: 64 LDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAI 123
Query: 140 ASGHYAKVVHSSADQEY-------KPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
A+GHYA+ S D+E KP L ++ +V++ L + K F L
Sbjct: 124 ATGHYART--SLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQ--AADSFKDQTFFLSQ 179
Query: 193 ISKEEVRK 200
+S++ +R+
Sbjct: 180 VSQDALRR 187
>UNIPROTKB|E2QS09 [details] [associations]
symbol:TRMU "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016783 "sulfurtransferase activity" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] HAMAP:MF_00144 InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 GO:GO:0005739 GO:GO:0008033
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
ProteinModelPortal:E2QS09 Ensembl:ENSCAFT00000001213 Uniprot:E2QS09
Length = 421
Score = 350 (128.3 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 83/222 (37%), Positives = 120/222 (54%)
Query: 166 DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK-DRKDSQGICFLGKI 224
D KDQT+FLS +SQ L+R +FPLG ++K+ V+K A + L + +K+S GICF+GK
Sbjct: 168 DSFKDQTFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKR 227
Query: 225 KFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNN 284
F F+ +++ G + E LG H G++ YT+GQR + PWYVVEKD
Sbjct: 228 NFENFILQYLQPRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPWYVVEKDGTKG 287
Query: 285 VVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIE 339
VFV+ R L R + W++ PP + R ++C + RH C L +
Sbjct: 288 DVFVAPRTDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN 347
Query: 340 HVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
+DG + V+ + LA GQFA FY+G C+GSG IL
Sbjct: 348 --QDGTVWVTAVKAV---RALALGQFAVFYKGDECLGSGKIL 384
Score = 257 (95.5 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 57/141 (40%), Positives = 75/141 (53%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
Q V LSGGVDS+VA LL G+ T ++K W D C + D + A
Sbjct: 2 QAARHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGV---CTADRDCEDAY 58
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSM 134
VC +D+P V EYW +V S + EY GRTPNPD++CN IKF F A+ ++
Sbjct: 59 RVCQILDIPFHQVSYVKEYWNDVFSDFLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNL 118
Query: 135 EFDYVASGHYAKVVHSSADQE 155
D VA+GHYA+ S D+E
Sbjct: 119 GADAVATGHYART--SLEDEE 137
>UNIPROTKB|F6V9U0 [details] [associations]
symbol:TRMU "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016783 "sulfurtransferase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] HAMAP:MF_00144
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054 GO:GO:0005737
GO:GO:0008033 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
KO:K00566 OMA:HASEKKH Gene3D:2.30.30.280 PANTHER:PTHR11933
TIGRFAMs:TIGR00420 GeneTree:ENSGT00390000014323 CTD:55687
Ensembl:ENSCAFT00000001213 EMBL:AAEX03007216 RefSeq:XP_538325.2
GeneID:481204 KEGG:cfa:481204 Uniprot:F6V9U0
Length = 425
Score = 350 (128.3 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 83/222 (37%), Positives = 120/222 (54%)
Query: 166 DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK-DRKDSQGICFLGKI 224
D KDQT+FLS +SQ L+R +FPLG ++K+ V+K A + L + +K+S GICF+GK
Sbjct: 168 DSFKDQTFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKR 227
Query: 225 KFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNN 284
F F+ +++ G + E LG H G++ YT+GQR + PWYVVEKD
Sbjct: 228 NFENFILQYLQPRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPWYVVEKDGTKG 287
Query: 285 VVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIE 339
VFV+ R L R + W++ PP + R ++C + RH C L +
Sbjct: 288 DVFVAPRTDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN 347
Query: 340 HVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
+DG + V+ + LA GQFA FY+G C+GSG IL
Sbjct: 348 --QDGTVWVTAVKAV---RALALGQFAVFYKGDECLGSGKIL 384
Score = 257 (95.5 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 57/141 (40%), Positives = 75/141 (53%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
Q V LSGGVDS+VA LL G+ T ++K W D C + D + A
Sbjct: 2 QAARHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGV---CTADRDCEDAY 58
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSM 134
VC +D+P V EYW +V S + EY GRTPNPD++CN IKF F A+ ++
Sbjct: 59 RVCQILDIPFHQVSYVKEYWNDVFSDFLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNL 118
Query: 135 EFDYVASGHYAKVVHSSADQE 155
D VA+GHYA+ S D+E
Sbjct: 119 GADAVATGHYART--SLEDEE 137
>UNIPROTKB|Q5ZKW0 [details] [associations]
symbol:TRMU "Mitochondrial tRNA-specific 2-thiouridylase 1"
species:9031 "Gallus gallus" [GO:0016783 "sulfurtransferase
activity" evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054 GO:GO:0005739
GO:GO:0005524 GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482 KO:K00566
OMA:HASEKKH Gene3D:2.30.30.280 PANTHER:PTHR11933
HOGENOM:HOG000218046 GeneTree:ENSGT00390000014323 EMBL:AJ719974
IPI:IPI00575295 RefSeq:NP_001026522.1 UniGene:Gga.48137
ProteinModelPortal:Q5ZKW0 STRING:Q5ZKW0 Ensembl:ENSGALT00000006694
GeneID:425909 KEGG:gga:425909 CTD:55687 HOVERGEN:HBG108157
InParanoid:Q5ZKW0 OrthoDB:EOG4P2Q2D NextBio:20827708 Uniprot:Q5ZKW0
Length = 424
Score = 331 (121.6 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 81/230 (35%), Positives = 123/230 (53%)
Query: 166 DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRK---------DSQ 216
D KDQT+FLS +SQ L++ IFPLG ++K VRK A++ L + +K S
Sbjct: 169 DLFKDQTFFLSQISQDALRKTIFPLGDLTKSFVRKIASEHGLHHVLKKKEACTTFPFQSM 228
Query: 217 GICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYV 276
G+CF+G+ F +F+ ++ G + E +G H G++ YTIGQR L G W+V
Sbjct: 229 GVCFIGERNFEKFLLEYLEPQPGNFVSIEDKKVMGTHKGWFLYTIGQRARLAGLQGAWFV 288
Query: 277 VEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGF 331
V+KDV +FV+ + R L R + W++ PP E+ R ++C + RH
Sbjct: 289 VDKDVSTGDIFVAPSTDHPALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMAL 348
Query: 332 YNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
C L + +DG + +V+ + + L GQFA FY+G C+GSG IL
Sbjct: 349 VPCVLTLN--QDGSVWVTLVKPA---RALTPGQFAVFYKGDECLGSGKIL 393
Score = 272 (100.8 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 66/188 (35%), Positives = 102/188 (54%)
Query: 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
G +VA +SGGVDS+VA LL G+ T ++K W D + C + D + A V
Sbjct: 5 GRRVACAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDPLDEQG---ACSVDRDCEDAYRV 61
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEF 136
C ++D+P V EYW V S +++EY GRTPNPD++CN IKF F+ A+ ++
Sbjct: 62 CQKLDIPFHQVSYVKEYWNEVFSDLLKEYELGRTPNPDIVCNKHIKFNHFLHYAMDNLGA 121
Query: 137 DYVASGHYAKVVHSSAD---QEYKPSVLELSKDKVKDQTYFLSHLSQAQL-KRLIFPLGC 192
D +A+GHYA+ + Q++ EL +++ + + + L A L K F L
Sbjct: 122 DAIATGHYARTSLEDEEVFQQKHTKRPRELFRNRFEVRNT-VKLLQGADLFKDQTFFLSQ 180
Query: 193 ISKEEVRK 200
IS++ +RK
Sbjct: 181 ISQDALRK 188
>TIGR_CMR|CBU_1147 [details] [associations]
symbol:CBU_1147 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:227377 "Coxiella burnetii RSA 493" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 KO:K00566 ProtClustDB:PRK00143
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 OMA:QPGNIET RefSeq:NP_820145.2
ProteinModelPortal:Q820W2 SMR:Q820W2 PRIDE:Q820W2 GeneID:1209049
KEGG:cbu:CBU_1147 PATRIC:17931025
BioCyc:CBUR227377:GJ7S-1137-MONOMER Uniprot:Q820W2
Length = 362
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 134/375 (35%), Positives = 199/375 (53%)
Query: 13 MPH-QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDM 71
MP+ ++ +AV LSGGVDSSVA +L G+ +++ W + + F C E+D+
Sbjct: 1 MPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETDSKDPF---CTAEQDL 57
Query: 72 KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI 131
AKA+ D + +PL VV+ + YW +V + ++E+ GRTPNPDV CN IKF + +D
Sbjct: 58 SDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ ++A+GHYA + + + EY+ L S D KDQ+YFL L+Q QL +FP+G
Sbjct: 118 KKLGATHLATGHYACI--QNENNEYR---LLKSNDSHKDQSYFLHLLNQYQLANSVFPIG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
K EVR A + N +KDS GICF+G+ KF +F+ + G I E G +G
Sbjct: 173 GYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFLLAQPGNI-ETSEGKIIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
KH G FYT+GQR+GL + G PWYVV+KDVK NV+ V + Y +
Sbjct: 232 KHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYSQELTCT 291
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+L W+ P + K R C ++ +++ + VQ + + GQ
Sbjct: 292 NLHWIRDTEPSFPLTCKAKTRCRQADQTC--VVTRLDN---DHCHVQFEHPQRAITRGQS 346
Query: 366 AAFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 347 VVFYLGNECLGGGII 361
>UNIPROTKB|F1N2P9 [details] [associations]
symbol:TRMU "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016783
"sulfurtransferase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] HAMAP:MF_00144 InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 GO:GO:0005739 GO:GO:0008033
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783 KO:K00566
OMA:HASEKKH Gene3D:2.30.30.280 PANTHER:PTHR11933
GeneTree:ENSGT00390000014323 CTD:55687 EMBL:DAAA02014976
IPI:IPI00845174 RefSeq:NP_001156660.1 UniGene:Bt.9055
Ensembl:ENSBTAT00000007346 GeneID:616451 KEGG:bta:616451
NextBio:20900138 Uniprot:F1N2P9
Length = 417
Score = 347 (127.2 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 82/223 (36%), Positives = 121/223 (54%)
Query: 166 DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK-DRKDSQGICFLGKI 224
D KDQT+FLS + Q L+R +FPLG ++K+ V+K A + L + +K+S GICF+GK
Sbjct: 168 DSFKDQTFFLSQVPQEALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKR 227
Query: 225 KFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKD-VKN 283
F F+ ++ G + E LG H G++ YT+GQR + PWYVV+KD K
Sbjct: 228 NFENFILEYLQPRPGRFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVDKDGAKG 287
Query: 284 NVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMI 338
+V+ R + R L R G + W++ PP + R ++C + RH C L +
Sbjct: 288 DVLVAPRTDHPA-LYRDLLRTGRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTL 346
Query: 339 EHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
+DG + V+ + LA GQFA FY+G C+GSG IL
Sbjct: 347 N--QDGTVWVTAVKAV---RALAPGQFAVFYKGDECLGSGKIL 384
Score = 251 (93.4 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 55/136 (40%), Positives = 75/136 (55%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V +SGGVDS+VA LL G+ T ++K W D C + D + A VC
Sbjct: 7 VVCAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGV---CTADRDCEDAYRVCRI 63
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYV 139
+D+P V EYW +V S + EY GRTPNPD++CN IKF F + A+ ++ D V
Sbjct: 64 LDIPFRQVSYAKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFRCFFNYAVDNLGADAV 123
Query: 140 ASGHYAKVVHSSADQE 155
A+GHYA+ S D+E
Sbjct: 124 ATGHYART--SLEDEE 137
>UNIPROTKB|F1SM74 [details] [associations]
symbol:TRMU "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016783
"sulfurtransferase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR004506 InterPro:IPR023382
Pfam:PF03054 GO:GO:0005739 GO:GO:0008033 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 Gene3D:2.30.30.280
PANTHER:PTHR11933 GeneTree:ENSGT00390000014323 OMA:CHFRFIH
EMBL:FP016092 Ensembl:ENSSSCT00000000008 Uniprot:F1SM74
Length = 394
Score = 350 (128.3 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 84/222 (37%), Positives = 120/222 (54%)
Query: 166 DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK-DRKDSQGICFLGKI 224
D KDQT+FLS +SQ L+R +FPLG ++K V+K A + L + +K+S GICF+GK
Sbjct: 141 DSFKDQTFFLSQVSQDALRRTLFPLGGLTKAFVKKIAAENRLHHVLQKKESMGICFVGKR 200
Query: 225 KFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNN 284
F +F+ +++ G + E LG H G++ YT+GQR + PWYVVEKD +
Sbjct: 201 NFEDFILQYLQPRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPWYVVEKDSASG 260
Query: 285 VVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIE 339
V V+ R L R G + W++ PP + R + C + RH C L +
Sbjct: 261 DVLVAPRTDHPALYRDLLRTGRVHWIAEEPPAALVRDKMMACHFRFRHQMALVPCVLTLN 320
Query: 340 HVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
+DG + V E + LA GQFA FY+G C+GSG IL
Sbjct: 321 --QDGTVWVTAV---EAVRALALGQFAVFYKGDECLGSGKIL 357
Score = 200 (75.5 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 43/115 (37%), Positives = 62/115 (53%)
Query: 42 GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSY 101
G+ T ++K W D C ++D + A VC +D+ V EYW +V S
Sbjct: 1 GYQVTGVFMKNWDLLDERGV---CAADKDCEDAYRVCQILDLXFRQVSYVKEYWHDVFSD 57
Query: 102 IIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYVASGHYAKVVHSSADQE 155
+ EY GRTPNPD++CN IKF F + A+ ++ D VA+GHYA+ S D+E
Sbjct: 58 FLNEYEKGRTPNPDIICNKHIKFSCFFNYAVDNLGADAVATGHYART--SQEDEE 110
>FB|FBgn0040337 [details] [associations]
symbol:CG3021 species:7227 "Drosophila melanogaster"
[GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016783 "sulfurtransferase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR004506 InterPro:IPR023382
Pfam:PF03054 GO:GO:0005739 GO:GO:0005524 EMBL:AE014298
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 KO:K00566 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 GeneTree:ENSGT00390000014323
EMBL:AY051773 RefSeq:NP_652639.1 UniGene:Dm.23134
ProteinModelPortal:Q9W5B6 SMR:Q9W5B6 MINT:MINT-289915 STRING:Q9W5B6
PRIDE:Q9W5B6 EnsemblMetazoa:FBtr0070173 GeneID:53546
KEGG:dme:Dmel_CG3021 UCSC:CG3021-RA FlyBase:FBgn0040337
HOGENOM:HOG000216707 InParanoid:Q9W5B6 OMA:CHFRFIH
OrthoDB:EOG402V7K PhylomeDB:Q9W5B6 GenomeRNAi:53546 NextBio:841339
Bgee:Q9W5B6 Uniprot:Q9W5B6
Length = 389
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 121/373 (32%), Positives = 187/373 (50%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V V +SGGVDS+V+ LL G +++ W + D C E D+K A+ C Q
Sbjct: 5 VVVGVSGGVDSAVSAHLLAEQGFKVLGVFMRNWDEADEVG---RCSGEADLKDAEWACRQ 61
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF-MDAISSMEFDYV 139
+ V L V+ EYW V S +++Y+ G TPNPD+LCN IKF F A+ ++ +D V
Sbjct: 62 LGVELRQVNYVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKFDLFHKHALENLGYDAV 121
Query: 140 ASGHYAKVV---HSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
A+GHYA+ + + L + D KDQT+FL+ +S+ L+R +FPLG K
Sbjct: 122 ATGHYARNSLGNYLEGIASNNDARLLIPADTFKDQTFFLAGISRKALQRTMFPLGDFQKS 181
Query: 197 EVRKFATQFDLPN-KDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
+V+ A + +K+S GICF+GK F +F+ +I G L+ ++G +G H G
Sbjct: 182 QVKDLAKKIGFQRLAKKKESTGICFVGKRNFKDFIQEYITSKRGPFLDIDSGAVVGHHEG 241
Query: 256 FWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
+T+GQR L P++V K+ +N ++V+ + V WL
Sbjct: 242 IHQWTVGQRCRLSSFLQPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKSQ 301
Query: 316 EEIS---RLQCKVR--HGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+ +S L+C+ R H +C L I N +V+L + + GQ+A FY
Sbjct: 302 QILSDTGSLRCRFRFQHTKPLVDCQLSISP-----SNTFLVELDAPLRAITPGQYAVFYD 356
Query: 371 GTRCIGSGVILES 383
T C+GS IL +
Sbjct: 357 DTACLGSARILSA 369
>TIGR_CMR|CHY_2197 [details] [associations]
symbol:CHY_2197 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566
OMA:HASEKKH Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
RefSeq:YP_361010.1 ProteinModelPortal:Q3AA24 STRING:Q3AA24
GeneID:3728689 KEGG:chy:CHY_2197 PATRIC:21277461
BioCyc:CHYD246194:GJCN-2196-MONOMER Uniprot:Q3AA24
Length = 365
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 126/366 (34%), Positives = 188/366 (51%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQ--EDFENFWTECPWEEDMKYAKAV 77
KV V +SGGVDSSV LL G+ ++IW E + C + A+ V
Sbjct: 8 KVLVAMSGGVDSSVTAALLLEQGYEVVGVTMQIWDPKIEVIGEEYVGCCSIYAVNDARRV 67
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
D++ +P V++ + + + V+ Y EEY GRTPNP + CN IKF A + S+ D
Sbjct: 68 ADRLGIPYYVLNFRELFERKVIDYFTEEYLRGRTPNPCIACNRYIKFDALLKKALSLGMD 127
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
Y+A+GHYA+VV+ +Y L D+ KDQTY L +L+Q L+RL+ PLG +KE+
Sbjct: 128 YMATGHYARVVYKDDIGKYG---LFRGVDRKKDQTYVLYNLTQDMLRRLLLPLGEYTKEQ 184
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGE--MEGVILEAETGDFLGKHWG 255
VR+ A +++L D+ +SQ ICF+ + +F+ GE G ++ G LG+H G
Sbjct: 185 VRELARKYNLVTADKPESQEICFVPDNDYRKFLKERRGEEIKPGNFVDVN-GRVLGQHQG 243
Query: 256 FWFYTIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+ +YTIGQR+GL L G P+YVV+ + N V + F + L W +P
Sbjct: 244 YPYYTIGQRKGLGLALGKPYYVVDIRPETNEVVIGEASEIFSPGLIASDLNFL-WFDEIP 302
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
E Q ++R YN VE G++ V +E + + GQ FY+G
Sbjct: 303 --ERFEAQAQIR-----YNAKPQPAVVERIGKDKVKVVFNEPQRAITPGQAVVFYRGDEL 355
Query: 375 IGSGVI 380
+G G I
Sbjct: 356 LGGGTI 361
>TIGR_CMR|GSU_2569 [details] [associations]
symbol:GSU_2569 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566
OMA:HASEKKH ProtClustDB:PRK00143 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 RefSeq:NP_953615.2
ProteinModelPortal:Q74A22 GeneID:2686382 KEGG:gsu:GSU2569
PATRIC:22027989 BioCyc:GSUL243231:GH27-2546-MONOMER Uniprot:Q74A22
Length = 365
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 122/370 (32%), Positives = 192/370 (51%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDF-----ENFWTECPWEEDMKYA 74
++ + +SGGVDSSVA LL GH +++W +F E F T C + D+ A
Sbjct: 8 RIVIAMSGGVDSSVAAALLKEEGHEVIGISMQVWDYANFAAPEGEKFDTCCSLD-DIHDA 66
Query: 75 KAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSM 134
+ V +Q+ +P VV+ +E+ + V+ ++EY GRTPNP V CN R+KF + +
Sbjct: 67 RRVAEQIGIPFYVVNFEEEFRRLVIDDFVDEYFRGRTPNPCVRCNQRVKFELLLHKAREL 126
Query: 135 EFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
D++A+GHYA+ V D Y L D KDQ+YFL L+Q QL R +FPLG ++
Sbjct: 127 GADFLATGHYARRVRGE-DGLYH---LLRGLDPAKDQSYFLFTLTQDQLARTLFPLGEMT 182
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVA--RHIGEMEGVILEAETGDFLGK 252
KE+VR+ A + L ++ +SQ ICF+ + F+ R G M G I++ + G+ LG+
Sbjct: 183 KEQVRRLAAERGLRVAEKGESQEICFVPDDDYVRFLEEERGTGLMAGEIVDRK-GNVLGR 241
Query: 253 HWGFWFYTIGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
H G + YT+GQR+GL + P YVV D + V V + + + W+
Sbjct: 242 HGGTYRYTVGQRRGLGIAHPTPLYVVGVDAERRQVIVGP---AEELLATGLTATEVTWV- 297
Query: 312 GLPPE-EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+PP+ + CK+R+ C + + DG A V+ + ++ + GQ FY+
Sbjct: 298 -VPPQGQTVEASCKIRYRHQPVPCTVAVR--ADGS---AEVRFRQPEKSVTPGQAVVFYR 351
Query: 371 GTRCIGSGVI 380
+G G I
Sbjct: 352 DDEVLGGGWI 361
>DICTYBASE|DDB_G0288979 [details] [associations]
symbol:trmu "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:44689 "Dictyostelium discoideum" [GO:0016783
"sulfurtransferase activity" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
dictyBase:DDB_G0288979 GO:GO:0005739 GO:GO:0005524
GenomeReviews:CM000154_GR EMBL:AAFI02000129 GO:GO:0008033
GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
eggNOG:COG0482 KO:K00566 Gene3D:2.30.30.280 PANTHER:PTHR11933
TIGRFAMs:TIGR00420 RefSeq:XP_636447.1 ProteinModelPortal:Q54I63
STRING:Q54I63 EnsemblProtists:DDB0238286 GeneID:8626899
KEGG:ddi:DDB_G0288979 OMA:NWINEIP ProtClustDB:CLSZ2515581
Uniprot:Q54I63
Length = 451
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 112/369 (30%), Positives = 187/369 (50%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV + +SGGVDS++ +LL G T ++K W ++ E+ C E D K A +
Sbjct: 66 KVCIGMSGGVDSTITAKLLKLQGFDVTGVFIKSW--DEVEDTG-RCQGERDWKDALEASN 122
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
+D+P+ +YW V +++Y+ G TPNPDV CN IKF F D A + DY
Sbjct: 123 FLDIPMYKADFVKDYWNRVFVDFLKDYKNGLTPNPDVWCNREIKFDLFFDFAKENFGVDY 182
Query: 139 VASGHYAKVVHSSADQ-EYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A+GHY+ + + + + + L+L + DK KDQT+FL +LK+ IFP+G +K
Sbjct: 183 IATGHYSNLYYGEENVGDNNNNNLQLHRAIDKNKDQTFFLCMTKGERLKQAIFPIGGFTK 242
Query: 196 EEVRKFATQFDLPN----KDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL- 250
E + FA +PN +K S+GICF+GK +F+++++ G + T F+
Sbjct: 243 ENIVSFAKT--IPNFSKITSKKSSRGICFIGKRPLPDFLSQYMTLKPGDFFDISTNSFIK 300
Query: 251 GK-HWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRL--FRVGSL 307
GK H G YT+GQ+ + +++V D++ N+V+V FD+ F S
Sbjct: 301 GKKHKGSVCYTMGQKANIDSLSERYFIVRSDIERNIVYVCPES-QFDQFSLYYEFNTHSF 359
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAV-------VQLSEDDQGL 360
W++ +P E S K R G + +++ ++D G+ + V L + + +
Sbjct: 360 NWINEIPTEVKSEQGFKGR-GICRHRGDVVNLTIKDTGKTSPIDGSVIYSVNLDQPLRSV 418
Query: 361 AAGQFAAFY 369
A+GQ +
Sbjct: 419 ASGQILCLF 427
>POMBASE|SPAC23H4.04 [details] [associations]
symbol:SPAC23H4.04 "mitochondrial
tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000049
"tRNA binding" evidence=IEA] [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0016783 "sulfurtransferase
activity" evidence=IEA] [GO:0070903 "mitochondrial tRNA
thio-modification" evidence=ISO] InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 PomBase:SPAC23H4.04 GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GO:GO:0000049 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482 KO:K00566
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 GO:GO:0004808 PIR:T38324 RefSeq:NP_593402.1
ProteinModelPortal:O13947 STRING:O13947 EnsemblFungi:SPAC23H4.04.1
GeneID:2541868 KEGG:spo:SPAC23H4.04 OMA:DEREEYC OrthoDB:EOG4KH63V
NextBio:20802955 GO:GO:0070903 Uniprot:O13947
Length = 415
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 120/391 (30%), Positives = 195/391 (49%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSS + LL S G++ +++ W ED + CP E D + VC
Sbjct: 33 KVFVAMSGGVDSSFSAYLLKSQGYNVEGVFMRNWLDEDSAP--SGCPAERDWATVQKVCK 90
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI-----SSM 134
++++ + EYW V ++ Y G TPNPDV CN ++KFGA DA+ +++
Sbjct: 91 KLNISCRRFNFEKEYWNLVFEPSLDLYENGLTPNPDVSCNRQVKFGALFDALKKHCENNV 150
Query: 135 EFDY-VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
+ D+ +ASGHYAK V + E S + + DK KDQT FL + + L++ IFPL
Sbjct: 151 KGDWWLASGHYAKSV---VNIETNESHMCIPTDKRKDQTLFLCTIRKEALEKTIFPLHNW 207
Query: 194 SKEEVRKFATQFDLPN-KDRKDSQGICFL----GKIKFSEFVARHIGEMEGVIL----EA 244
+KE V+K A+ ++++SQG+CF+ G+ KF +F+ R++ + I +
Sbjct: 208 TKENVKKQASSAGFKEIAEKQESQGLCFVSPNVGR-KFRKFLQRYLNFSDRPIKVIAGKN 266
Query: 245 ETGDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKK 298
G+F G H G W T+G+R GL LP G WYV +KD+KNN +++ R +
Sbjct: 267 VVGEFSGNH-GIWSLTVGERCGLSLPQAQSEYFGRWYVWKKDIKNNALYICRGTNNELLM 325
Query: 299 RRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVED---------GGENIA 349
+ + KW ++LQ + +C + + H + E++
Sbjct: 326 SKCIYLKDWKWCG-------TKLQNLEKSA---LSCFVRVRHQQPLQPAKVTWRNPESVK 375
Query: 350 VVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
+ + + + GQ A Y C+G G++
Sbjct: 376 I-HFQDKQRAVTPGQVIAVYVNDVCLGGGMV 405
>WB|WBGene00007114 [details] [associations]
symbol:B0035.16 species:6239 "Caenorhabditis elegans"
[GO:0004066 "asparagine synthase (glutamine-hydrolyzing) activity"
evidence=IEA] [GO:0006529 "asparagine biosynthetic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005739 GO:GO:0005524 GO:GO:0008033 GO:GO:0000049
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783 EMBL:Z73102
eggNOG:COG0482 KO:K00566 Gene3D:2.30.30.280 PANTHER:PTHR11933
TIGRFAMs:TIGR00420 HOGENOM:HOG000218046 PIR:T18663
RefSeq:NP_502120.1 ProteinModelPortal:Q17440 SMR:Q17440
STRING:Q17440 EnsemblMetazoa:B0035.16.1 EnsemblMetazoa:B0035.16.2
GeneID:178038 KEGG:cel:CELE_B0035.16 UCSC:B0035.16 CTD:178038
WormBase:B0035.16 GeneTree:ENSGT00390000014323 InParanoid:Q17440
OMA:RESSEIC NextBio:899464 Uniprot:Q17440
Length = 375
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 123/380 (32%), Positives = 185/380 (48%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDS+V+ LL G ++ W + E + CP +D A+ VCD
Sbjct: 3 RVVIGMSGGVDSAVSAFLLKKRGFDVIGLHMINWDVQ--EEGTSHCPRSKDESDARNVCD 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++++P V+ EYW +V +E Y+ GRT PD+ CN IKF F A D+
Sbjct: 61 RLNIPFHTVNFVKEYWNDVFLKFLENYKNGRTTVPDIDCNQSIKFDVFHKIAREKFNADF 120
Query: 139 VASGHYAKVVHSSADQEYKPS-VLEL--SKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A+GHYA Q K S + L KD +KDQT+FL ++Q QLKR +FPLG + K
Sbjct: 121 IATGHYATTNFGDFQQNAKDSDEIRLFSGKDPLKDQTFFLCTVNQEQLKRAMFPLGSLQK 180
Query: 196 EEVRKFATQFDLPNKDRK-DSQGICFLGKIK-FSEFVARHIGEMEGVILEAETGDFLGKH 253
EV++ A + +K +S GICF+GK K FS+F+ +I G IL + G +G H
Sbjct: 181 SEVKRIAEEQGFQEVAKKPESMGICFIGKKKRFSDFLDEYIEPKPGRIL-LKNGSEIGNH 239
Query: 254 WGFWFYTIGQR-QGLRLPGGP---WYV--VEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
G +TIG+R G L ++V + D +++ +++ D F +
Sbjct: 240 HGIHQFTIGKRINGKYLEARSHLGFFVSHIHSDT-GDIIACEGSHHP-DLYASRFLINHP 297
Query: 308 KWLSGLPP-EEIS--RLQCKVR--HGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
KW+ P IS C+++ H P C + E E I + L + A
Sbjct: 298 KWIRTFDPFNRISSNNFLCRIQRTHPP--IPC--VAEKQEQFLSVIPRLAL----RATAP 349
Query: 363 GQFAAFYQG-TRCIGSGVIL 381
GQ FY C+G G I+
Sbjct: 350 GQMCVFYNTKNECLGGGEIM 369
>CGD|CAL0003878 [details] [associations]
symbol:orf19.7245 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=IEA] [GO:0070903 "mitochondrial tRNA thio-modification"
evidence=IEA] InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
CGD:CAL0003878 GO:GO:0005737 GO:GO:0008033 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 EMBL:AACQ01000092 eggNOG:COG0482
KO:K00566 Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
RefSeq:XP_715045.1 ProteinModelPortal:Q59ZU6 STRING:Q59ZU6
GeneID:3643278 KEGG:cal:CaO19.7245 Uniprot:Q59ZU6
Length = 423
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 110/376 (29%), Positives = 190/376 (50%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+ V +S GVDSSV L + + Y+ W Q C E D K + VC
Sbjct: 61 IIVAMSSGVDSSVCAAL-YKDYPNVHGLYMANWSQS------ATCT-ERDWKDVQRVCQD 112
Query: 81 VDVP-LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD-- 137
+ + E V+ EYW++V +IE+Y G TPNPD+ CN +KFG +D + ++D
Sbjct: 113 LGISSCERVNFEHEYWQDVFMPMIEKYEKGLTPNPDIGCNKFVKFGKLIDYLHK-KYDGT 171
Query: 138 ----YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
++ +GHYA+++ + EY L + KDQ+Y+LS + Q+ L +++ P+G
Sbjct: 172 GKDWWLVTGHYARIMKHNETGEYH---LLRGLSQRKDQSYYLSSIPQSSLSKILLPIGHY 228
Query: 194 SKEEVRKFA-TQFDLPNKDRKDSQGICFLG--KIKFSEFVARHIGEMEGVILEAETGDFL 250
K ++R+ A QF L + DSQG+CF+ + F EF+ +I E G I+ E G
Sbjct: 229 IKPQIRELAHDQFKLHTATKPDSQGLCFVNPQQSNFREFLNDYIPENPGDII-TEDGKVW 287
Query: 251 GKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRV 304
G+H G W TIGQ+ + +P G W+V +K+ + N + + + + + ++ +
Sbjct: 288 GQHKGLWHATIGQKSSVCMPQADPQYQGIWFVSDKNYEKNQIIIVKGHDNPKLFKQTVEL 347
Query: 305 GSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQ 364
L+WL P E++ LQ ++ + ++ + + + + + V +L + LA GQ
Sbjct: 348 TQLEWLH--PKEKVLCLQ-SLQFQYHSLSKSIPVTRIIESQDRLTV-ELETPVRALAPGQ 403
Query: 365 FAAFYQGTRCIGSGVI 380
Y+G + +G G+I
Sbjct: 404 AGVLYKGNQVLGGGMI 419
>TIGR_CMR|NSE_0468 [details] [associations]
symbol:NSE_0468 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0004808
"tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006396 "RNA processing" evidence=ISS] HAMAP:MF_00144
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054 GO:GO:0005524
GO:GO:0005737 GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620
InterPro:IPR014729 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0016783 eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566
OMA:HASEKKH Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
RefSeq:YP_506353.1 ProteinModelPortal:Q2GDU3 STRING:Q2GDU3
GeneID:3931376 KEGG:nse:NSE_0468 PATRIC:22680985
ProtClustDB:CLSK2527917 BioCyc:NSEN222891:GHFU-489-MONOMER
Uniprot:Q2GDU3
Length = 371
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 118/369 (31%), Positives = 179/369 (48%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW--FQEDFENFWTECPWEEDMKYAKA 76
+KV V +SGGVDSS LH G+ L++ F N T C D+ AK
Sbjct: 19 VKVMVAMSGGVDSSTVAAYLHRVGYKVIGVTLQLHNNFTSTQTNRKTCCAGS-DIFDAKR 77
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V Q VV++ + + K V+ E Y G TP P V CN +KF M S+
Sbjct: 78 VAAQFGFLHYVVNMEETFRKEVIENFAESYLKGETPVPCVKCNQTVKFRDLMKIAKSLSV 137
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHY + + ++ E + D KDQ+YFL + ++ QL+ L FPLG + K
Sbjct: 138 DALATGHYVRRLTTTNGVELHKGI-----DPSKDQSYFLFNTTREQLEFLRFPLGNLKKS 192
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVA--RHIGEMEGVILEAETGDFLGKHW 254
E R A + + ++ +SQ ICF+ +++ + R + G IL + G+ LG H
Sbjct: 193 ETRDLARKLSVDISEKPESQDICFVNGKSYADVIKKFRPDAQRPGKILSTD-GEVLGTHN 251
Query: 255 GFWFYTIGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYYSFDK-KRRLFRVGSLKWLSG 312
G YTIGQR GL+L P YVV+ D +NN++ V DK ++R V + WL
Sbjct: 252 GTIHYTIGQRHGLQLSAPIPLYVVKIDAQNNIIIVGTR----DKLQQRSLYVKEVNWLDR 307
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
E + L+C+V+ G + + ++ GE + V E +A GQ Y G+
Sbjct: 308 --KELTAGLECEVKLRSG---ADTVKGYLYPNGELLKVSLAEEPKCAIAPGQACVMYHGS 362
Query: 373 RCIGSGVIL 381
+ +G G I+
Sbjct: 363 KVLGGGWIV 371
>RGD|1311229 [details] [associations]
symbol:Trmu "tRNA 5-methylaminomethyl-2-thiouridylate
methyltransferase" species:10116 "Rattus norvegicus" [GO:0000049
"tRNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;ISO] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0016783 "sulfurtransferase activity"
evidence=IEA] InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
RGD:1311229 GO:GO:0005739 GO:GO:0005524 GO:GO:0008033 GO:GO:0000049
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482
Gene3D:2.30.30.280 PANTHER:PTHR11933 HOGENOM:HOG000218046
GeneTree:ENSGT00390000014323 HOVERGEN:HBG108157 OrthoDB:EOG4P2Q2D
EMBL:BC161991 IPI:IPI00366450 UniGene:Rn.40588
ProteinModelPortal:B1WC37 STRING:B1WC37 PRIDE:B1WC37
Ensembl:ENSRNOT00000065283 ArrayExpress:B1WC37
Genevestigator:B1WC37 Uniprot:B1WC37
Length = 441
Score = 255 (94.8 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 56/136 (41%), Positives = 75/136 (55%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V LSGGVDS+VA LL G+ T ++K W D + C ++D + A VC
Sbjct: 7 VVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEQGI---CAADKDCEDAYKVCQI 63
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYV 139
+D+P V EYW +V S + EY GRTPNPD+ CN IKF F A+ ++ D V
Sbjct: 64 LDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADAV 123
Query: 140 ASGHYAKVVHSSADQE 155
A+GHYA+ S D+E
Sbjct: 124 ATGHYART--SLEDEE 137
Score = 214 (80.4 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 68/225 (30%), Positives = 102/225 (45%)
Query: 162 ELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFL 221
EL+KD VK + + L K+ + I K + F Q + + S G+ +
Sbjct: 194 ELTKDFVK-KIAAENRLHHVLQKKESMGICFIGKRNLEHFLLQVSVSDV----SGGLLWA 248
Query: 222 GKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDV 281
G + V +++ G + E LG H G++ YT+GQR + PWYVVEKD
Sbjct: 249 GAPVVMKPVFQYLQPRPGKFISIEDNRVLGTHKGWFLYTLGQRAKISGLSEPWYVVEKDG 308
Query: 282 KNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNL 336
V V+ R L R + W++ PP + R ++C + RH C L
Sbjct: 309 TKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVL 368
Query: 337 MIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
+ +DG + V+ +GLA GQFA FY+G C+GSG IL
Sbjct: 369 TLN--QDGTVWVTAVKAV---RGLALGQFAVFYKGEECLGSGKIL 408
Score = 157 (60.3 bits), Expect = 9.6e-32, Sum P(2) = 9.6e-32
Identities = 36/89 (40%), Positives = 55/89 (61%)
Query: 158 PSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK-DRKDSQ 216
P L + D KDQT+FLS +SQ L+R IFPLG ++K+ V+K A + L + +K+S
Sbjct: 160 PVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGELTKDFVKKIAAENRLHHVLQKKESM 219
Query: 217 GICFLGKIKFSEFVAR-HIGEMEGVILEA 244
GICF+GK F+ + + ++ G +L A
Sbjct: 220 GICFIGKRNLEHFLLQVSVSDVSGGLLWA 248
>TIGR_CMR|DET_0779 [details] [associations]
symbol:DET_0779 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566
OMA:HASEKKH ProtClustDB:PRK00143 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 RefSeq:YP_181511.1
ProteinModelPortal:Q3Z8D8 STRING:Q3Z8D8 PRIDE:Q3Z8D8 GeneID:3229892
KEGG:det:DET0779 PATRIC:21608619 BioCyc:DETH243164:GJNF-780-MONOMER
Uniprot:Q3Z8D8
Length = 357
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 113/367 (30%), Positives = 182/367 (49%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQ-EDFENFWTECPWEEDMKYAKAVCD 79
+ V +SGGVDSSVA LL G+ L++ E + N + + + A+ V
Sbjct: 8 IMVAMSGGVDSSVAAMLLLEQGYDVAGVSLQLKSNNEPYGNGYNL----KLINRAREVAA 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P VV L+D + + V++ ++Y GRTPNP + CN +K GA ++ I Y+
Sbjct: 64 ALGIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLEKIPDFNAGYL 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V+ E +L+ D+ KDQ+YFL L L RLIFPLG K+++
Sbjct: 124 ATGHYARVL----SDENGTHLLK-GADEKKDQSYFLYTLPPESLSRLIFPLGKRYKKDII 178
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + LP +K+SQ +CF+ + F+A +G G IL+ +TG LG+H G Y
Sbjct: 179 RLADKMKLP-VSQKESQDVCFIPDGDYKSFLATRMGFTPGKILD-KTGKILGEHQGLPLY 236
Query: 260 TIGQRQGLRLPGGP-WYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
TIGQRQGL L +V + + + N + V+ + + + L + W P +
Sbjct: 237 TIGQRQGLGLASNEKLFVSDMNPEANTIMVASHDQLYTSRILL---SNFIWRESRIPLDT 293
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
+ KVR+ ++ + G+ +++L+ GQ A Y G +G G
Sbjct: 294 PGMIVKVRYKAA----PAEVKKISQTGD-FYLLELASPVWAATPGQAAVIYLGDMVLGGG 348
Query: 379 VILESWD 385
+I D
Sbjct: 349 IIEHGGD 355
>TIGR_CMR|ECH_0872 [details] [associations]
symbol:ECH_0872 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0004808
"tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006396 "RNA processing" evidence=ISS] HAMAP:MF_00144
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054 GO:GO:0005524
GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0008033
GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566 ProtClustDB:PRK00143
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
RefSeq:YP_507667.1 ProteinModelPortal:Q2GFW6 STRING:Q2GFW6
GeneID:3927304 KEGG:ech:ECH_0872 PATRIC:20577146 OMA:GTDSSVA
BioCyc:ECHA205920:GJNR-875-MONOMER Uniprot:Q2GFW6
Length = 367
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 113/362 (31%), Positives = 172/362 (47%)
Query: 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82
V +SGGVDSSVA LLH G+ L+++ + C D + AK V +
Sbjct: 23 VAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNTTGKG---ACCGSLDTQDAKQVASIMG 79
Query: 83 VPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASG 142
P ++ + + V+ I+ Y G+TP P + CN +KF ++A S++ D + +G
Sbjct: 80 FPHYTLNYEKVFKEEVIDDFIDTYMQGKTPIPCIKCNQVVKFRDLLNATKSLDADILVTG 139
Query: 143 HYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFA 202
HY + + D Y S SKD KDQ+YFL + QLK L FPLG K+ +RK A
Sbjct: 140 HYIRKIEQD-DDIYVYS----SKDTKKDQSYFLFATTIEQLKFLRFPLGNFHKDNIRKLA 194
Query: 203 TQFDLPNKDRKDSQGICFLGKIKFSEFVA--RHIGEMEGVILEAETGDFLGKHWGFWFYT 260
F+LP ++ DSQ ICF+ + +A R +G I++ +G+ LG+H G +T
Sbjct: 195 EHFNLPIANKPDSQNICFVADT-YKNTIAQLRPNAIKKGNIIDT-SGNILGQHDGIVNFT 252
Query: 261 IGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL-SGLPPEEI 318
IGQR+G+ L P YV++ + N V V K + + WL P
Sbjct: 253 IGQRRGIGLSSKEPLYVIKLNPDTNEVTVGHKSALLQNK---LHIEKINWLVKDKIPHTG 309
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
++ K+R ++ + I + D N A V L + + GQ Y G R +G G
Sbjct: 310 LNVKVKLRSS---HSGSTAIVYPNDN--NKATVLLQDTYCTVTPGQACVIYDGDRMLGGG 364
Query: 379 VI 380
I
Sbjct: 365 WI 366
>TIGR_CMR|CJE_0048 [details] [associations]
symbol:CJE_0048 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:195099 "Campylobacter jejuni RM1221" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566
OMA:HASEKKH ProtClustDB:PRK00143 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 RefSeq:YP_178073.1
ProteinModelPortal:Q5HXB2 STRING:Q5HXB2 GeneID:3230811
KEGG:cjr:CJE0048 PATRIC:20041801 BioCyc:CJEJ195099:GJC0-52-MONOMER
Uniprot:Q5HXB2
Length = 338
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 84/275 (30%), Positives = 158/275 (57%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+K+ V +SGGVDS+V L + GH Y+K+ + ++ EE++K + V
Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYH--------EENIKKVEKVA 52
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + +P ++ L +++ V ++ Y+ G+TPNP LCN IK G ++ S+ +
Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA++ ++ +++ + D+ KDQ+YFL+ + LK LIFPLG + KE+V
Sbjct: 113 LATGHYARLENN---------LIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163
Query: 199 RKFATQFDLPNK--DRKDSQGICFLGKIKFSEFVARHIG-EMEGVILEAETGDFLGKHWG 255
+KFA+ ++ +K+S ICF+ + + + + + + ++ G +L++ +G +GKH G
Sbjct: 164 KKFASTIEVLKSFATQKESSEICFV-EDTYVQVLDQFMDTKIPGEVLDS-SGKVVGKHEG 221
Query: 256 FWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFV 288
+ YTIG+R+G + G P +V++ + K N + V
Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIV 256
Score = 235 (87.8 bits), Expect = 8.2e-18, P = 8.2e-18
Identities = 68/227 (29%), Positives = 122/227 (53%)
Query: 159 SVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK--DRKDSQ 216
++++ + D+ KDQ+YFL+ + LK LIFPLG + KE+V+KFA+ ++ +K+S
Sbjct: 124 NLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKESS 183
Query: 217 GICFLGKIKFSEFVARHIG-EMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGG--P 273
ICF+ + + + + + + ++ G +L++ +G +GKH G+ YTIG+R+G + G P
Sbjct: 184 EICFV-EDTYVQVLDQFMDTKIPGEVLDS-SGKVVGKHEGYMHYTIGKRRGFEVRGAHEP 241
Query: 274 WYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYN 333
+V++ + K N + V + K F + ++ + +E+ + K+R+
Sbjct: 242 HFVLKINPKQNQIIVGTKE---ELKISEFNLKNINLF--IDAKELD-CEVKIRYRSKSTP 295
Query: 334 CNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
C +E ED I L + GLA+GQ A FY + I SG I
Sbjct: 296 CK--VEIYEDKSAKII---LKDPVYGLASGQMAVFYDHDKVIASGFI 337
>TIGR_CMR|APH_0910 [details] [associations]
symbol:APH_0910 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006396
"RNA processing" evidence=ISS] HAMAP:MF_00144 InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 GO:GO:0005524 GO:GO:0005737
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
RefSeq:YP_505483.1 ProteinModelPortal:Q2GJG8 STRING:Q2GJG8
PRIDE:Q2GJG8 GeneID:3930715 KEGG:aph:APH_0910 PATRIC:20950530
eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566 OMA:HASEKKH
ProtClustDB:PRK00143 BioCyc:APHA212042:GHPM-923-MONOMER
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
Uniprot:Q2GJG8
Length = 378
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 110/366 (30%), Positives = 172/366 (46%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V V +SGGVDSSV LLH G+ ++++ + + C D+ AK V
Sbjct: 21 VVVAMSGGVDSSVVAVLLHKMGYKVIGATMQLYSSPNASS-GKSCCGNADIYDAKKVAAS 79
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
P V++ + + K V+ + Y+ G TP P + CN +KF + ++ D VA
Sbjct: 80 FGFPHYVLNYEEVFRKEVIEDFVNSYKAGETPIPCIKCNQTVKFRDMLKMARTIGGDVVA 139
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHY + + + + + KDK KDQ+YFL ++ QLK + FPLG + K +VRK
Sbjct: 140 TGHYVRRLEVEGELQ-----IWSGKDKNKDQSYFLFSMTLEQLKFVRFPLGNLVKGDVRK 194
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVAR--HIGEMEGVILEAETGDFLGKHWGFWF 258
A ++ D+ DSQ ICF+ K + + +A +G I + G LG+H G
Sbjct: 195 IAQYLNIEVADKPDSQDICFVPK-NYKKTLASLDPSAIKKGKIHHID-GSVLGEHDGIAN 252
Query: 259 YTIGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG--LPP 315
+T+GQR+GL + P YVV D N V V + S K +LF + L WLS +P
Sbjct: 253 FTVGQRKGLGIAYPYPLYVVALDPVKNTVIVGPS--SSLVKTQLF-LRDLNWLSKDQIPE 309
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
+S ++R + +DG + + + ++ GQ Y R +
Sbjct: 310 HGLSA-SVRLRSSSSAVQATIS-RSAKDGKGRVVL----HEGCVVSPGQACVIYDNERLL 363
Query: 376 GSGVIL 381
G G IL
Sbjct: 364 GGGWIL 369
>SGD|S000002191 [details] [associations]
symbol:SLM3 "tRNA-specific 2-thiouridylase" species:4932
"Saccharomyces cerevisiae" [GO:0070903 "mitochondrial tRNA
thio-modification" evidence=IMP] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS;IMP] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016783 "sulfurtransferase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 SGD:S000002191 GO:GO:0005739
GO:GO:0005524 EMBL:BK006938 GO:GO:0000049 Gene3D:3.40.50.620
InterPro:IPR014729 EMBL:Z71781 GO:GO:0016783 eggNOG:COG0482
KO:K00566 Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 GO:GO:0004808 GeneTree:ENSGT00390000014323
OMA:DEREEYC OrthoDB:EOG4KH63V GO:GO:0070903 EMBL:AY624369
EMBL:Z74081 PIR:S67566 RefSeq:NP_010251.1 ProteinModelPortal:Q12093
SMR:Q12093 IntAct:Q12093 MINT:MINT-640057 STRING:Q12093
PaxDb:Q12093 PeptideAtlas:Q12093 EnsemblFungi:YDL033C GeneID:851529
KEGG:sce:YDL033C CYGD:YDL033c NextBio:968917 Genevestigator:Q12093
GermOnline:YDL033C Uniprot:Q12093
Length = 417
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 87/287 (30%), Positives = 145/287 (50%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQ-EDFENFWTECPWEEDMKYAKAVCD 79
V V +S GVDSSVA L + Y++ W + + ++ E +E D + V
Sbjct: 29 VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSM--EFD 137
+++ ++ V+ +YW +V ++ Y G TPNPD+ CN +KFG + + +
Sbjct: 89 HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148
Query: 138 Y-VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
Y + +GHYA+V+ + + + + K DQ+Y+LS ++ L L+ P+G ++K
Sbjct: 149 YWLVTGHYARVMQEMNGKGLFHLLRSIYRPK--DQSYYLSQINSTVLSSLLLPIGHLTKP 206
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKI---KFSEFVARHIGEMEGVIL--EAETG--DF 249
EVR A LP ++ DSQGICF+ KF F+ ++ G I+ + ++G
Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLPSSPGDIITVDPQSGAKTT 266
Query: 250 LGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR 290
G+H G W YTIGQ+ G+ +P G W+V EK N + + R
Sbjct: 267 WGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVR 313
>TIGR_CMR|SPO_1677 [details] [associations]
symbol:SPO_1677 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566
OMA:HASEKKH ProtClustDB:PRK00143 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 RefSeq:YP_166916.1
ProteinModelPortal:Q5LST9 GeneID:3192677 KEGG:sil:SPO1677
PATRIC:23376679 Uniprot:Q5LST9
Length = 375
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 116/372 (31%), Positives = 169/372 (45%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV L G+ L+++ C D+ A+ V +
Sbjct: 16 RVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAALAKKGACCAGIDIHDARRVAE 75
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ P V+ + + V+ + Y G TP P + CN R+KF ++ +E D +
Sbjct: 76 ERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLETARDLEADCM 135
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI-SKEEV 198
A+GHY + E L ++D +DQ+YFL + QL L FPLG + SK+
Sbjct: 136 ATGHYIQRKMGPNGPE-----LHCAEDANRDQSYFLFSTTPEQLDYLRFPLGHLPSKDAT 190
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVAR-HIGEME-GVILEAETGDFLGKHWGF 256
R+ A Q+ L D+ DSQ ICF+ ++ + + G E G I+ A+ G LG H G
Sbjct: 191 REMAAQYGLAVADKPDSQDICFVPNGNYASVIEKLRPGAAEPGEIVHAD-GRVLGSHEGV 249
Query: 257 WFYTIGQRQGLRLPG--GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
YTIGQR+GL + G P YVV DV V V R V + WL P
Sbjct: 250 IHYTIGQRRGLGIGGLSEPLYVVRLDVDRKQVVVGPKELL---ATRTIPVREINWLGDAP 306
Query: 315 ----PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
PE L KVR ++ + E A V+L ++G++ GQ FY+
Sbjct: 307 FTSRPEW--HLSVKVRSTRPPREA--IVRPIS---ETEAEVELLTPEEGVSPGQACVFYE 359
Query: 371 --GTRCIGSGVI 380
G+R G G I
Sbjct: 360 SDGSRIFGGGWI 371
>MGI|MGI:1919276 [details] [associations]
symbol:Trmu "tRNA 5-methylaminomethyl-2-thiouridylate
methyltransferase" species:10090 "Mus musculus" [GO:0000049 "tRNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016783
"sulfurtransferase activity" evidence=IEA] InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 MGI:MGI:1919276 GO:GO:0005739
GO:GO:0005524 GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482 KO:K00566
OMA:HASEKKH Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 GeneTree:ENSGT00390000014323 CTD:55687
HOVERGEN:HBG108157 OrthoDB:EOG4P2Q2D BRENDA:2.1.1.61 EMBL:AY349617
EMBL:AK005541 EMBL:AK043532 EMBL:AK044059 EMBL:BC061026
IPI:IPI00119022 RefSeq:NP_082339.1 UniGene:Mm.158211
ProteinModelPortal:Q9DAT5 SMR:Q9DAT5 STRING:Q9DAT5
PhosphoSite:Q9DAT5 PaxDb:Q9DAT5 PRIDE:Q9DAT5
Ensembl:ENSMUST00000023019 GeneID:72026 KEGG:mmu:72026
UCSC:uc007xdr.1 InParanoid:Q9DAT5 NextBio:335254 Bgee:Q9DAT5
Genevestigator:Q9DAT5 GermOnline:ENSMUSG00000022386 Uniprot:Q9DAT5
Length = 417
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 84/230 (36%), Positives = 122/230 (53%)
Query: 158 PSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK-DRKDSQ 216
P L + D KDQT+FLS +SQ L+R IFPLG ++K+ V+K A + L + +++S
Sbjct: 160 PVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGELTKDFVKKIAAENSLHHVLQKRESM 219
Query: 217 GICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYV 276
GICF+GK F+ +++ G + E LG H G++ YT+GQR + PWYV
Sbjct: 220 GICFIGKRNLEHFLLQYLQPRPGKFVSIEDNTVLGTHKGWFLYTLGQRAKISGLREPWYV 279
Query: 277 VEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGF 331
VEKD V V+ R L R + W++ PP + R ++C + RH
Sbjct: 280 VEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMAL 339
Query: 332 YNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
C L + +DG + V+ +GLA GQFA FY+G C+GSG IL
Sbjct: 340 VPCVLTLN--QDGTVWVTAVKAV---RGLALGQFAVFYKGEECLGSGKIL 384
Score = 256 (95.2 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 66/188 (35%), Positives = 96/188 (51%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V LSGGVDS+VA LL G+ T ++K W D + C ++D + A VC
Sbjct: 7 VVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEQGV---CAADKDCEDAYKVCQI 63
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYV 139
+D+P V EYW +V S + EY GRTPNPD+ CN IKF F A+ ++ D V
Sbjct: 64 LDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDINCNKHIKFSCFYHYAVDNLGADAV 123
Query: 140 ASGHYAKVVHSSADQEY-------KPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
A+GHYA+ S D+E KP L ++ +V++ L + K F L
Sbjct: 124 ATGHYART--SLEDEEVFEQKHTKKPDGLFRNRFEVRNPVKLLQ--AADSFKDQTFFLSQ 179
Query: 193 ISKEEVRK 200
+S++ +R+
Sbjct: 180 VSQDALRR 187
>UNIPROTKB|H9KZX8 [details] [associations]
symbol:H9KZX8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0016783 "sulfurtransferase
activity" evidence=IEA] InterPro:IPR004506 InterPro:IPR023382
Pfam:PF03054 GO:GO:0005737 GO:GO:0008033 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 Gene3D:2.30.30.280
PANTHER:PTHR11933 GeneTree:ENSGT00390000014323 EMBL:AADN02041320
EMBL:AADN02041321 Ensembl:ENSGALT00000021262 Uniprot:H9KZX8
Length = 408
Score = 249 (92.7 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 69/210 (32%), Positives = 105/210 (50%)
Query: 177 HLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGE 236
HL AQ+ F L C+S + F+T F S G+CF+G+ F +F+ ++
Sbjct: 183 HL--AQISNRHF-LQCLSLL-LYGFSTTFPF------QSMGVCFIGERNFEKFLLEYLEP 232
Query: 237 MEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFD 296
G + E +G H G++ YTIGQR L G W+VV+KDV +FV+ +
Sbjct: 233 QPGNFVSIEDKKVMGTHKGWFLYTIGQRARLAGLQGAWFVVDKDVSTGDIFVAPSTDHPA 292
Query: 297 KKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVV 351
R L R + W++ PP E+ R ++C + RH C L + +DG + +V
Sbjct: 293 LFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVLTLN--QDGSVWVTLV 350
Query: 352 QLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
+ + + L GQFA FY+G C+GSG IL
Sbjct: 351 KPA---RALTPGQFAVFYKGDECLGSGKIL 377
Score = 139 (54.0 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 33/102 (32%), Positives = 49/102 (48%)
Query: 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
G +VA +SGGVDS+VA LL G+ T ++K W D + C + D + A V
Sbjct: 5 GRRVACAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDPLDEQG---ACSVDRDCEDAYRV 61
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCN 119
C ++D+P V EYW V + T P ++C+
Sbjct: 62 CQKLDIPFHQVSYVKEYWNEVFRDWAMLFFYKSTMQPAIVCS 103
>ZFIN|ZDB-GENE-050522-540 [details] [associations]
symbol:trmu "tRNA
5-methylaminomethyl-2-thiouridylate methyltransferase" species:7955
"Danio rerio" [GO:0016783 "sulfurtransferase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000049
"tRNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 ZFIN:ZDB-GENE-050522-540
GO:GO:0005739 GO:GO:0005524 GO:GO:0008033 GO:GO:0000049
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482
KO:K00566 Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 CTD:55687 HOVERGEN:HBG108157 OrthoDB:EOG4P2Q2D
EMBL:BC095308 IPI:IPI00502534 RefSeq:NP_001018435.1
UniGene:Dr.86660 ProteinModelPortal:Q503J2 GeneID:553625
KEGG:dre:553625 InParanoid:Q503J2 NextBio:20880362 Uniprot:Q503J2
Length = 416
Score = 310 (114.2 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 75/228 (32%), Positives = 115/228 (50%)
Query: 157 KPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK-DRKDS 215
KP L D +KDQT+FLS +SQ L+ +FPL ++K V+K A + + +K+S
Sbjct: 159 KPVRLYQGADLLKDQTFFLSQISQDALRHTLFPLAGLTKGYVKKIAAEAGFQHVLKKKES 218
Query: 216 QGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWY 275
GICF+GK F F+ ++ G + E G +GKH G++ T+GQR + W+
Sbjct: 219 MGICFIGKRDFENFILEYLEPRPGNFVSIEDGQIMGKHKGWFTLTLGQRARIGGRADAWF 278
Query: 276 VVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCN 335
VV+KDV VFV + + R + W++ PP E+ Q H +N
Sbjct: 279 VVDKDVTTADVFVCPSTFHPALFRDTLQTDRFHWIAEEPPAELVHTQMMDCHF--CFNNR 336
Query: 336 LMIEH--VEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
+ + V + V + E +G+A GQFA Y+G C+GSG I+
Sbjct: 337 MPLTPCTVTLNLDGSVWVMVKEPMRGMATGQFAVLYKGHECLGSGKII 384
Score = 261 (96.9 bits), Expect = 3.6e-20, P = 3.6e-20
Identities = 64/185 (34%), Positives = 97/185 (52%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V +SGGVDSSV+ LL G+ T ++K W ++ + C + D + A VC
Sbjct: 7 VVCAMSGGVDSSVSALLLKRMGYHVTGVFMKNWDSQEEKGL---CSSDRDCEDAYKVCKM 63
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYV 139
+D+P V EYW V S ++ EY GRTPNPD++CN IKF F A++++ D +
Sbjct: 64 LDIPFHEVSYVKEYWHEVFSNLLWEYERGRTPNPDIICNKHIKFKHFYQYAVNTLGADAM 123
Query: 140 ASGHYAKVVHSSADQE-YKPSVLELSKDKVKDQTYFLSHLSQAQ----LKRLIFPLGCIS 194
A+GHYA+ S D+E ++ + E K +D+ + Q LK F L IS
Sbjct: 124 ATGHYART--SQEDEEVFQQKLTEAPKSLFRDRFEIRKPVRLYQGADLLKDQTFFLSQIS 181
Query: 195 KEEVR 199
++ +R
Sbjct: 182 QDALR 186
>UNIPROTKB|B4DZN5 [details] [associations]
symbol:TRMU "Mitochondrial tRNA-specific 2-thiouridylase 1"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] InterPro:IPR004506
Pfam:PF03054 GO:GO:0005737 GO:GO:0008033 GO:GO:0008168
Gene3D:3.40.50.620 InterPro:IPR014729 EMBL:AL031588
UniGene:Hs.439524 PANTHER:PTHR11933 IPI:IPI00909385 HGNC:HGNC:25481
ChiTaRS:TRMU EMBL:AK303020 SMR:B4DZN5 STRING:B4DZN5
Ensembl:ENST00000424260 HOGENOM:HOG000203888 Uniprot:B4DZN5
Length = 131
Score = 196 (74.1 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 38/92 (41%), Positives = 54/92 (58%)
Query: 65 CPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF 124
C ++D + A VC +D+P V EYW +V S + EY GRTPNPD++CN IKF
Sbjct: 13 CTADKDCEDAYRVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKF 72
Query: 125 GAFMD-AISSMEFDYVASGHYAKVVHSSADQE 155
F A+ ++ D +A+GHYA+ S D+E
Sbjct: 73 SCFFHYAVDNLGADAIATGHYART--SLEDEE 102
>UNIPROTKB|Q2PPL5 [details] [associations]
symbol:TRMU "Mitochondrial
5-methylaminomethyl-2-thiouridylate-methyltransferase transcript
variant 2" species:9606 "Homo sapiens" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA]
InterPro:IPR004506 Pfam:PF03054 GO:GO:0005737 GO:GO:0008033
GO:GO:0008168 Gene3D:3.40.50.620 InterPro:IPR014729 EMBL:AL031588
UniGene:Hs.439524 PANTHER:PTHR11933 HGNC:HGNC:25481 ChiTaRS:TRMU
EMBL:DQ309998 EMBL:DQ309999 IPI:IPI00515029 SMR:Q2PPL5
STRING:Q2PPL5 Ensembl:ENST00000381021 Ensembl:ENST00000441818
Ensembl:ENST00000453630 Ensembl:ENST00000456595 HOVERGEN:HBG083892
Uniprot:Q2PPL5
Length = 99
Score = 126 (49.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/78 (37%), Positives = 39/78 (50%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V LSGGVDS+VA LL G+ T ++K W D C ++D + A VC
Sbjct: 7 VVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGV---CTADKDCEDAYRVCQI 63
Query: 81 VDVPLEVVHLTDEYWKNV 98
+D+P V EYW +V
Sbjct: 64 LDIPFHQVSYVKEYWNDV 81
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 474 474 0.0010 118 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 621 (66 KB)
Total size of DFA: 327 KB (2165 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.14u 0.10s 40.24t Elapsed: 00:00:03
Total cpu time: 40.14u 0.10s 40.24t Elapsed: 00:00:03
Start: Tue May 21 02:26:19 2013 End: Tue May 21 02:26:22 2013