BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042717
(474 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297746327|emb|CBI16383.3| unnamed protein product [Vitis vinifera]
Length = 544
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/468 (81%), Positives = 421/468 (89%), Gaps = 2/468 (0%)
Query: 8 YLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPW 67
YLSCS+P+ + LK+AVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQEDFENFW+ECPW
Sbjct: 78 YLSCSLPNNR-LKIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPW 136
Query: 68 EEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF 127
E+D+KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF
Sbjct: 137 EDDLKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF 196
Query: 128 MDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI 187
MDAISS EFDYVASGHYA VVHS DQ KPSVLELSKD VKDQTYFLSHLSQ QLKRLI
Sbjct: 197 MDAISSKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLI 256
Query: 188 FPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETG 247
FPLGCI K+EVR AT+ DLPN+DRKDSQGICFLGKIKFSEFVARHIGE EG+ILEAETG
Sbjct: 257 FPLGCIPKDEVRSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAETG 316
Query: 248 DFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
D LGKH GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY+S DK+RRLFRVGSL
Sbjct: 317 DLLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGSL 376
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
KW+S PP +I++LQCKVRHGPGFYNC+ +E EDG E++AVVQLSEDDQGLAAGQF A
Sbjct: 377 KWISREPPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAAGQFTA 436
Query: 368 FYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEFNSN- 426
FYQG CIGSGVILESWDDQGFPVC KALEIARMEDKSKLGKP+KIKV+PETP + +
Sbjct: 437 FYQGRSCIGSGVILESWDDQGFPVCAKALEIARMEDKSKLGKPVKIKVRPETPPKGSDQI 496
Query: 427 KGVQSSRNLVNAQNSIAEKSNTTSQEEAISRFPMNWLQKLREKWPRIL 474
G++ R L N+Q ++ ++ + +S+ EA SRFPMNWLQK+REKW ++L
Sbjct: 497 DGIKLDRELANSQAAVTDEISRSSEGEARSRFPMNWLQKIREKWLQML 544
>gi|225435460|ref|XP_002282827.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Vitis vinifera]
Length = 540
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/468 (81%), Positives = 421/468 (89%), Gaps = 2/468 (0%)
Query: 8 YLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPW 67
YLSCS+P+ + LK+AVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQEDFENFW+ECPW
Sbjct: 74 YLSCSLPNNR-LKIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPW 132
Query: 68 EEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF 127
E+D+KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF
Sbjct: 133 EDDLKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF 192
Query: 128 MDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI 187
MDAISS EFDYVASGHYA VVHS DQ KPSVLELSKD VKDQTYFLSHLSQ QLKRLI
Sbjct: 193 MDAISSKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLI 252
Query: 188 FPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETG 247
FPLGCI K+EVR AT+ DLPN+DRKDSQGICFLGKIKFSEFVARHIGE EG+ILEAETG
Sbjct: 253 FPLGCIPKDEVRSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAETG 312
Query: 248 DFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
D LGKH GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY+S DK+RRLFRVGSL
Sbjct: 313 DLLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGSL 372
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
KW+S PP +I++LQCKVRHGPGFYNC+ +E EDG E++AVVQLSEDDQGLAAGQF A
Sbjct: 373 KWISREPPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAAGQFTA 432
Query: 368 FYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEFNSN- 426
FYQG CIGSGVILESWDDQGFPVC KALEIARMEDKSKLGKP+KIKV+PETP + +
Sbjct: 433 FYQGRSCIGSGVILESWDDQGFPVCAKALEIARMEDKSKLGKPVKIKVRPETPPKGSDQI 492
Query: 427 KGVQSSRNLVNAQNSIAEKSNTTSQEEAISRFPMNWLQKLREKWPRIL 474
G++ R L N+Q ++ ++ + +S+ EA SRFPMNWLQK+REKW ++L
Sbjct: 493 DGIKLDRELANSQAAVTDEISRSSEGEARSRFPMNWLQKIREKWLQML 540
>gi|449448726|ref|XP_004142116.1| PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cucumis
sativus]
gi|449524848|ref|XP_004169433.1| PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cucumis
sativus]
Length = 538
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/468 (78%), Positives = 412/468 (88%), Gaps = 2/468 (0%)
Query: 8 YLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPW 67
+LSCSMP LKVAVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQEDFENFW+ECPW
Sbjct: 72 FLSCSMPTYP-LKVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPW 130
Query: 68 EEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF 127
++D+KYAKAVCDQVDVPLEVVHLT+EYW+NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF
Sbjct: 131 DDDLKYAKAVCDQVDVPLEVVHLTEEYWRNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF 190
Query: 128 MDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI 187
MDAIS+MEFDYVASGHYA V+H SADQ KPSVLELSKD VKDQTYFLSHLSQ QLKRL+
Sbjct: 191 MDAISNMEFDYVASGHYANVIHPSADQMDKPSVLELSKDMVKDQTYFLSHLSQNQLKRLL 250
Query: 188 FPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETG 247
FPLGCI K+EVRK A +F+LPNKDRKDSQGICFLGKIKFSEFVARHIGE EGVILEAE+G
Sbjct: 251 FPLGCIPKDEVRKLAAKFNLPNKDRKDSQGICFLGKIKFSEFVARHIGEDEGVILEAESG 310
Query: 248 DFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
DFLGKH GFWFYTIGQRQGLRLPGGPWYVVEKD+KNNVVFVSRNY+SFDK+RR+FRVGSL
Sbjct: 311 DFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDIKNNVVFVSRNYFSFDKRRRVFRVGSL 370
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
KWLSG PP++ + LQCKVRHGP FY+CNL +EH EDG E++AVV LSEDDQGLAAGQFAA
Sbjct: 371 KWLSGFPPDQFTELQCKVRHGPSFYSCNLTMEHSEDGHEDVAVVHLSEDDQGLAAGQFAA 430
Query: 368 FYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETP-EEFNSN 426
FY+G CIGSGVILESWDDQGFPVC+KA+E A+MEDKSKLGKPIKIKVKPE+ +E +
Sbjct: 431 FYKGRSCIGSGVILESWDDQGFPVCQKAIENAQMEDKSKLGKPIKIKVKPESGMKESKAK 490
Query: 427 KGVQSSRNLVNAQNSIAEKSNTTSQEEAISRFPMNWLQKLREKWPRIL 474
+ L N + ++ E+ S +EA++ M WL L++K +I
Sbjct: 491 DDTEIHDKLRNEEATVVEQIREVSPDEAMATPSMKWLGSLKKKLLQIF 538
>gi|255544898|ref|XP_002513510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
putative [Ricinus communis]
gi|223547418|gb|EEF48913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
putative [Ricinus communis]
Length = 497
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/441 (80%), Positives = 401/441 (90%), Gaps = 1/441 (0%)
Query: 4 IEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWT 63
IEP YLSC +P + L++A+LLSGGVDSSVALRLLH+AGH CTAFYLKIWFQEDFENFW+
Sbjct: 56 IEPNYLSCCLPDKNNLRIALLLSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFENFWS 115
Query: 64 ECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIK 123
ECPWEED+KYAKAVCDQVD+PLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIK
Sbjct: 116 ECPWEEDLKYAKAVCDQVDIPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIK 175
Query: 124 FGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQL 183
FGAFMDAI++MEFDYVASGHYAKV+H SAD+ +PSVLELSKD VKDQTYFLSHLSQAQL
Sbjct: 176 FGAFMDAINNMEFDYVASGHYAKVIHPSADEINQPSVLELSKDMVKDQTYFLSHLSQAQL 235
Query: 184 KRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILE 243
+RLIFPLG ISK+EVRK AT F+LPNKDRKDSQGICFLGKIKFSEFVARHIGEMEG++LE
Sbjct: 236 RRLIFPLGGISKDEVRKLATLFNLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGIMLE 295
Query: 244 AETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
AETGDFLG H GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY+SFDK+RRL R
Sbjct: 296 AETGDFLGNHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRLLR 355
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
VGSL+W +G PP+E S LQCKVRHGPGFYNC+++IE E +++A+VQL EDDQGLAAG
Sbjct: 356 VGSLRWFNGSPPKETSELQCKVRHGPGFYNCSVVIEPGEVDDQDVAIVQLCEDDQGLAAG 415
Query: 364 QFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETP-EE 422
QFAAFY+G CIGSGVILESW+DQGFPVCE+ALE+AR+EDKS+LGKP+KIKVKPE P E
Sbjct: 416 QFAAFYKGRTCIGSGVILESWNDQGFPVCERALELARIEDKSELGKPVKIKVKPEIPVRE 475
Query: 423 FNSNKGVQSSRNLVNAQNSIA 443
F+ G++ R L N+Q ++
Sbjct: 476 FDGKDGIEVERGLNNSQVAVT 496
>gi|356541193|ref|XP_003539065.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Glycine max]
Length = 488
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/416 (81%), Positives = 377/416 (90%)
Query: 7 RYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECP 66
RYL CSMP L+VAVL+SGGVDSSVALRLLH+AGHSCTAFYLKIWFQEDFENFW+ECP
Sbjct: 50 RYLRCSMPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECP 109
Query: 67 WEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGA 126
WE+D+KYAK VC+QVDVPLEVVHLTDEYW NVVSY+IEEY GRTPNPDVLCNTRIKFGA
Sbjct: 110 WEDDLKYAKDVCNQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGA 169
Query: 127 FMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRL 186
F+DAI M FDYVASGHYA V+H +D+ +PSVLELS+D VKDQTYFLSHLSQ+QLK+L
Sbjct: 170 FLDAIGGMGFDYVASGHYANVIHPCSDRRDEPSVLELSQDMVKDQTYFLSHLSQSQLKQL 229
Query: 187 IFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAET 246
+FPLGCI K+EVRK AT+FDLPNKDRKDSQGICFLGKI+FSEFVARHIGE EGVILEAET
Sbjct: 230 LFPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGVILEAET 289
Query: 247 GDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
GDFLGKH GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY+SFDK+RR+FRVGS
Sbjct: 290 GDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGS 349
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
KWLSGLPP + ++LQCKVRHGPGFY+C+L +E DG + AVV++SEDDQGLAAGQFA
Sbjct: 350 FKWLSGLPPGQTTQLQCKVRHGPGFYDCSLQMEVEADGQCHSAVVRISEDDQGLAAGQFA 409
Query: 367 AFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEE 422
AFY+G CIGSGVILE WDDQ FPVC KALEIARMEDKSK+G P+KIKVKP+ P+E
Sbjct: 410 AFYEGRTCIGSGVILEFWDDQSFPVCTKALEIARMEDKSKIGNPVKIKVKPDNPQE 465
>gi|224055025|ref|XP_002298404.1| predicted protein [Populus trichocarpa]
gi|222845662|gb|EEE83209.1| predicted protein [Populus trichocarpa]
Length = 434
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/428 (79%), Positives = 377/428 (88%), Gaps = 1/428 (0%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K L++AVLLSGGVDSSVALRLLH+AGH CTAFYLKIWFQEDF NFW+ECPWEED+K+AK
Sbjct: 6 KPLRIAVLLSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFNNFWSECPWEEDLKFAKG 65
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VCDQV VPLEVVHLTDEYW NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI++MEF
Sbjct: 66 VCDQVGVPLEVVHLTDEYWSNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAINNMEF 125
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DYVASGHYA V+H +DQ KPSVLELSKDK+KDQTYFLSHL+QAQLKRLIFPLGCI KE
Sbjct: 126 DYVASGHYAHVIHPVSDQINKPSVLELSKDKLKDQTYFLSHLTQAQLKRLIFPLGCIPKE 185
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR A++FDLPNKDRKDSQGICFLGKIKFSEFV RHIGE EGVILEAETGDFLG H GF
Sbjct: 186 EVRNLASKFDLPNKDRKDSQGICFLGKIKFSEFVGRHIGESEGVILEAETGDFLGIHRGF 245
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY+S DK+RR FRVGSLKWLSG P +
Sbjct: 246 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSLDKRRRSFRVGSLKWLSGSPTD 305
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
++LQCKVRHGP FY+C++ IE ED E + V L EDDQGLAAGQF AFYQG CIG
Sbjct: 306 MTTQLQCKVRHGPTFYDCSVKIELGEDSPEEVVAVHLCEDDQGLAAGQFTAFYQGRTCIG 365
Query: 377 SGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEFNSNK-GVQSSRNL 435
SGVILESWDD+GFPVC+KALE+AR+EDKSKLGKP+KIKVKPET ++ + K G++ + L
Sbjct: 366 SGVILESWDDKGFPVCQKALELARLEDKSKLGKPVKIKVKPETSDQESVQKDGIEPDKGL 425
Query: 436 VNAQNSIA 443
+ ++
Sbjct: 426 AEPRVAVT 433
>gi|145336613|ref|NP_175542.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Arabidopsis thaliana]
gi|332194528|gb|AEE32649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Arabidopsis thaliana]
Length = 497
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/435 (77%), Positives = 372/435 (85%), Gaps = 5/435 (1%)
Query: 4 IEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWT 63
I +YLSCSMP +K L+VAVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQE FENFW
Sbjct: 68 IVDQYLSCSMP-EKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWN 126
Query: 64 ECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIK 123
+CPWE+D+KYAK VC+QVDVPLEVVHLTDEYW+ VVSYIIEEYRCGRTPNPDVLCNTRIK
Sbjct: 127 QCPWEDDLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIK 186
Query: 124 FGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQL 183
FGAFMDAIS ME+DYV SGHYAKVVH ADQ SVLELS+D VKDQTYFLSHLSQ QL
Sbjct: 187 FGAFMDAISDMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQL 246
Query: 184 KRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILE 243
KRL+FPLGC+ K+EVRK ATQFDLPNKDRKDSQGICFLGKIKFS+FV RHIGEMEG+ILE
Sbjct: 247 KRLLFPLGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILE 306
Query: 244 AETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
AE+GDFLG H GFWFYTIGQRQGLRLPGGPWYVVEKD KNNVVFVSRNYYS DK+RR+FR
Sbjct: 307 AESGDFLGNHRGFWFYTIGQRQGLRLPGGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFR 366
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
VGSL+W SG P ++ L+CKVRHGPGFY+C+ +E G ++AVV L EDDQGLAAG
Sbjct: 367 VGSLRWNSGKPSGKVRELRCKVRHGPGFYSCSFEME----GDGDVAVVHLDEDDQGLAAG 422
Query: 364 QFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEF 423
QFAAFY+GT CIGSGVILESWDDQ FPVC KAL++A +EDK+KLGKP+KI P
Sbjct: 423 QFAAFYEGTTCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKIMTMPTMSSVE 482
Query: 424 NSNKGVQSSRNLVNA 438
+ + LVNA
Sbjct: 483 ADTGEASAEQKLVNA 497
>gi|297852856|ref|XP_002894309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Arabidopsis lyrata subsp. lyrata]
gi|297340151|gb|EFH70568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/432 (78%), Positives = 371/432 (85%), Gaps = 5/432 (1%)
Query: 7 RYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECP 66
+YLSCSMP +K L+VAVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQE FENFW +CP
Sbjct: 74 QYLSCSMP-EKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCP 132
Query: 67 WEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGA 126
WE+D+KYAK VC+QVDVPLEVVHLTDEYW+ VVSYIIEEYRCGRTPNPDVLCNTRIKFGA
Sbjct: 133 WEDDLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGA 192
Query: 127 FMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRL 186
FMDAIS ME+DYV SGHYAKVVH DQ SVLELS+D VKDQTYFLSHLSQ QLKRL
Sbjct: 193 FMDAISDMEYDYVGSGHYAKVVHPPVDQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRL 252
Query: 187 IFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAET 246
IFPLGC+ K+EVRK ATQFDLPNKDRKDSQGICFLGKIKFS+FV HIGEMEG+ILEAET
Sbjct: 253 IFPLGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCAHIGEMEGIILEAET 312
Query: 247 GDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
GDFLG H GFWFYTIGQRQGLRLPGGPWYVVEKD KNNVVFVSRNYYS DK+RR+FRVGS
Sbjct: 313 GDFLGNHRGFWFYTIGQRQGLRLPGGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGS 372
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L+WLSG P + L+CKVRHGP FY+C+ +E DG ++AVV L EDDQGLAAGQFA
Sbjct: 373 LRWLSGKPSGNVRELRCKVRHGPSFYSCSFEME--ADG--DVAVVHLDEDDQGLAAGQFA 428
Query: 367 AFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEFNSN 426
AFY+GT CIGSGVILESWDDQ FPVC KAL++A MEDK+KLGKP+KI+ P T +
Sbjct: 429 AFYEGTTCIGSGVILESWDDQCFPVCAKALQLAAMEDKTKLGKPVKIRTMPLTLSVEADS 488
Query: 427 KGVQSSRNLVNA 438
+ LVNA
Sbjct: 489 GESSAEEKLVNA 500
>gi|62320516|dbj|BAD95081.1| hypothetical protein [Arabidopsis thaliana]
Length = 497
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/435 (77%), Positives = 372/435 (85%), Gaps = 5/435 (1%)
Query: 4 IEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWT 63
I +YLSCSMP +K L+VAVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQE FENFW
Sbjct: 68 IVDQYLSCSMP-EKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWN 126
Query: 64 ECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIK 123
+CPWE+D+KYAK VC+QVDVPLEVVHLTDEYW+ VVSYIIEEYRCGRTPNPDVLCNTRIK
Sbjct: 127 QCPWEDDLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIK 186
Query: 124 FGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQL 183
FGAFMDAIS ME+DYV SGHYA+VVH ADQ SVLELS+D VKDQTYFLSHLSQ QL
Sbjct: 187 FGAFMDAISDMEYDYVGSGHYARVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQL 246
Query: 184 KRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILE 243
KRL+FPLGC+ K+EVRK ATQFDLPNKDRKDSQGICFLGKIKFS+FV RHIGEMEG+ILE
Sbjct: 247 KRLLFPLGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILE 306
Query: 244 AETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
AE+GDFLG H GFWFYTIGQRQGLRLPGGPWYVVEKD KNNVVFVSRNYYS DK+RR+FR
Sbjct: 307 AESGDFLGNHRGFWFYTIGQRQGLRLPGGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFR 366
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
VGSL+W SG P ++ L+CKVRHGPGFY+C+ +E G ++AVV L EDDQGLAAG
Sbjct: 367 VGSLRWNSGKPSGKVRELRCKVRHGPGFYSCSFEME----GDGDVAVVHLDEDDQGLAAG 422
Query: 364 QFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEF 423
QFAAFY+GT CIGSGVILESWDDQ FPVC KAL++A +EDK+KLGKP+KI P
Sbjct: 423 QFAAFYEGTTCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKIMTMPTMSSVE 482
Query: 424 NSNKGVQSSRNLVNA 438
+ + LVNA
Sbjct: 483 ADTGEASAEQKLVNA 497
>gi|4836940|gb|AAD30642.1|AC006085_15 Unknown protein [Arabidopsis thaliana]
gi|119935887|gb|ABM06024.1| At1g51310 [Arabidopsis thaliana]
Length = 421
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/426 (77%), Positives = 365/426 (85%), Gaps = 5/426 (1%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
MP +K L+VAVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQE FENFW +CPWE+D+K
Sbjct: 1 MP-EKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLK 59
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
YAK VC+QVDVPLEVVHLTDEYW+ VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS
Sbjct: 60 YAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 119
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
ME+DYV SGHYAKVVH ADQ SVLELS+D VKDQTYFLSHLSQ QLKRL+FPLGC
Sbjct: 120 DMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGC 179
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K+EVRK ATQFDLPNKDRKDSQGICFLGKIKFS+FV RHIGEMEG+ILEAE+GDFLG
Sbjct: 180 VKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAESGDFLGN 239
Query: 253 HWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
H GFWFYTIGQRQGLRLPGGPWYVVEKD KNNVVFVSRNYYS DK+RR+FRVGSL+W SG
Sbjct: 240 HRGFWFYTIGQRQGLRLPGGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNSG 299
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P ++ L+CKVRHGPGFY+C+ +E G ++AVV L EDDQGLAAGQFAAFY+GT
Sbjct: 300 KPSGKVRELRCKVRHGPGFYSCSFEME----GDGDVAVVHLDEDDQGLAAGQFAAFYEGT 355
Query: 373 RCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEFNSNKGVQSS 432
CIGSGVILESWDDQ FPVC KAL++A +EDK+KLGKP+KI P +
Sbjct: 356 TCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKIMTMPTMSSVEADTGEASAE 415
Query: 433 RNLVNA 438
+ LVNA
Sbjct: 416 QKLVNA 421
>gi|357113810|ref|XP_003558694.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Brachypodium
distachyon]
Length = 481
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/419 (73%), Positives = 355/419 (84%), Gaps = 6/419 (1%)
Query: 5 EPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE 64
E + C+ + L+VAVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQEDF NFW+E
Sbjct: 57 EEHLVRCAAAGRAPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFRNFWSE 116
Query: 65 CPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF 124
CPW++D+KYA+AVCD++DVPLEV HL+DEYW +VVS+II EYR GRTPNPDVLCNTRIKF
Sbjct: 117 CPWDDDLKYAQAVCDKIDVPLEVAHLSDEYWNHVVSHIINEYRNGRTPNPDVLCNTRIKF 176
Query: 125 GAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLK 184
GAF++AI ++ FDY+ASGHYA VVH S + PSVL+LSKDKVKDQTYFLSHLSQ QL+
Sbjct: 177 GAFLEAIDNLGFDYIASGHYAHVVHPSIENVEGPSVLQLSKDKVKDQTYFLSHLSQPQLR 236
Query: 185 RLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEA 244
RL+FPLGCI+K+EVR ATQ DLPN+ RKDSQGICFLGK+KFSEFV RHIGEMEGV+LEA
Sbjct: 237 RLLFPLGCITKDEVRSLATQMDLPNQGRKDSQGICFLGKVKFSEFVERHIGEMEGVLLEA 296
Query: 245 ETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRV 304
ETGD+LG+H GFWFYTIGQRQGLRLPGGPWYVVEKDV+NNVVFVSRNYYS DK+RR FRV
Sbjct: 297 ETGDYLGRHRGFWFYTIGQRQGLRLPGGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRV 356
Query: 305 GSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQ 364
GSL W S PE +L+CKVRH P F+NC + E E+ G+ +A V LSEDDQGLAAGQ
Sbjct: 357 GSLNWFSDSGPENDEQLKCKVRHSPEFHNCTVTREQTEESGDVLA-VHLSEDDQGLAAGQ 415
Query: 365 FAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIK-----VKPE 418
FAAFY+ C+GSG+IL+SWD+ FPVC ALEIARMEDKSKLGKP++I VKPE
Sbjct: 416 FAAFYRDNTCLGSGIILDSWDEMSFPVCANALEIARMEDKSKLGKPVRIVNLEHIVKPE 474
>gi|356544553|ref|XP_003540714.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-specific 2-thiouridylase
mnmA-like [Glycine max]
Length = 467
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/419 (75%), Positives = 350/419 (83%), Gaps = 23/419 (5%)
Query: 7 RYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECP 66
RYL CSMP L+VAVL+SGGVDSSVALRLLH+AGHSCTAFYLKIWFQEDFENFW+ECP
Sbjct: 64 RYLRCSMPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECP 123
Query: 67 WEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGA 126
WEED+KYAK VC+QVDVPLEVVHLTDEYW NVVSY+IEEY GRTPNPDVLCNTRIKFGA
Sbjct: 124 WEEDLKYAKDVCNQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGA 183
Query: 127 FMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRL 186
F+DAI M FDYVASGHYA V+H AD +PSVLELS+D VKDQTYFLSHLSQ+QL+RL
Sbjct: 184 FLDAIGGMGFDYVASGHYANVIHPCADWMDEPSVLELSQDMVKDQTYFLSHLSQSQLRRL 243
Query: 187 IFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAET 246
+FPLGCI K+EVRK AT+FDLPNKDRKDSQGICFLGKI+FSEFV RHIGE EG+ILEAET
Sbjct: 244 LFPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKIRFSEFVTRHIGEREGIILEAET 303
Query: 247 GDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
GDFLGKH GFWF KNNVVFVSRNY+SFDK+RR+F VGS
Sbjct: 304 GDFLGKHRGFWF-----------------------KNNVVFVSRNYFSFDKRRRVFCVGS 340
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
KWLSGLPP + S+LQCKVRHGPGFY+C+L +E DG AVV +SEDDQGLAAGQFA
Sbjct: 341 FKWLSGLPPGQTSQLQCKVRHGPGFYDCSLQMEVEGDGQCRSAVVCISEDDQGLAAGQFA 400
Query: 367 AFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEEFNS 425
AFY+G CIGSGVILE WDDQ FPVC KALEIARMEDKSK+G P+KIKVKP+ P+ +S
Sbjct: 401 AFYEGRTCIGSGVILEFWDDQSFPVCTKALEIARMEDKSKIGNPVKIKVKPDNPQVCDS 459
>gi|218192183|gb|EEC74610.1| hypothetical protein OsI_10221 [Oryza sativa Indica Group]
Length = 488
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/409 (73%), Positives = 350/409 (85%), Gaps = 1/409 (0%)
Query: 5 EPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE 64
+ R L C+ + L+VAVL+SGGVDSSVALRLLH+AGH CTAFYLKIWFQEDF NFW+E
Sbjct: 64 DERLLRCAAAGRAPLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSE 123
Query: 65 CPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF 124
CPW++D+KYA+AVCD++DVPLEVVHL+DEYW +VVS+II EYR GRTPNPDVLCNTRIKF
Sbjct: 124 CPWDDDLKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKF 183
Query: 125 GAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLK 184
GAF++AI ++ FDY+ASGHYA VVH S D PSVL+LSKDKVKDQTYFLSHLSQ QL+
Sbjct: 184 GAFLEAIENLGFDYIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLR 243
Query: 185 RLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEA 244
RL+FPLGCI+K+EVR+ A Q DLPN+DRKDSQGICFLGK+KFSEFV R IGEMEGV+LEA
Sbjct: 244 RLLFPLGCITKDEVRRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEA 303
Query: 245 ETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRV 304
ETGD+LG H GFWFYTIGQRQGLRLPGGPWYVVEKDV+NNVVFVSRNYYS DK+RR FRV
Sbjct: 304 ETGDYLGTHRGFWFYTIGQRQGLRLPGGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRV 363
Query: 305 GSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQ 364
GSL W S P +L+CKVRH P F++C + E + G I VV+LSEDDQGLAAGQ
Sbjct: 364 GSLNWFSNSGPTNNEQLKCKVRHSPEFHDCTVTQEQTSENGV-ILVVRLSEDDQGLAAGQ 422
Query: 365 FAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKI 413
FAAFY+ C+GSG+IL+SWD+ FPVC +ALEIARMEDKS+LGKP+KI
Sbjct: 423 FAAFYRDNLCLGSGIILDSWDEMNFPVCARALEIARMEDKSRLGKPVKI 471
>gi|242042037|ref|XP_002468413.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor]
gi|241922267|gb|EER95411.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor]
Length = 489
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/425 (71%), Positives = 354/425 (83%), Gaps = 6/425 (1%)
Query: 4 IEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWT 63
+E C+ + L+VAVL+SGGVDSSVALRLLH+AGH CTAFYLKIWFQEDF NFW+
Sbjct: 63 LEEHLTRCAAAGRAPLRVAVLVSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFRNFWS 122
Query: 64 ECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIK 123
ECPW+ED+KYA+AVCD++DVPLEVVHL+DEYW VVS++I EYRCGRTPNPDVLCNTRIK
Sbjct: 123 ECPWDEDLKYAQAVCDKIDVPLEVVHLSDEYWNYVVSHMINEYRCGRTPNPDVLCNTRIK 182
Query: 124 FGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQL 183
FGAF++AI ++ FDY+ASGHYA VVH S + PS+L+LSKDKVKDQTYFLSHLSQ QL
Sbjct: 183 FGAFLEAIENLGFDYIASGHYAHVVHPSTENTEAPSILQLSKDKVKDQTYFLSHLSQPQL 242
Query: 184 KRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILE 243
+RL+FPLGCI+K+EVR+ ATQ LPN+ RKDSQGICFLGK+KFSEFV RHIGEMEG+ILE
Sbjct: 243 RRLLFPLGCITKDEVRRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGEMEGIILE 302
Query: 244 AETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
AE+GD+LGKH GFWFYTIGQRQGLRLPGGPWYVVEKDV+NNVVFVSRNYYS DK+RR FR
Sbjct: 303 AESGDYLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFR 362
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
VGSL W P +L+CKVRH P F++C L+ EH E+ E+ VV LSEDDQGLAAG
Sbjct: 363 VGSLNWFDSSGPGNNEQLKCKVRHSPEFHDCTLIKEHTEE-NEDALVVHLSEDDQGLAAG 421
Query: 364 QFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKI-----KVKPE 418
QFAAFY C+GSG+IL+SWD FPVC +ALEIA++EDKS LGKP++I VKPE
Sbjct: 422 QFAAFYSEHSCLGSGIILDSWDKMSFPVCSRALEIAKLEDKSSLGKPVRILNLEHVVKPE 481
Query: 419 TPEEF 423
EE
Sbjct: 482 KQEEI 486
>gi|115451057|ref|NP_001049129.1| Os03g0174600 [Oryza sativa Japonica Group]
gi|108706458|gb|ABF94253.1| tRNA methyl transferase family protein, expressed [Oryza sativa
Japonica Group]
gi|113547600|dbj|BAF11043.1| Os03g0174600 [Oryza sativa Japonica Group]
gi|215737060|dbj|BAG95989.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 488
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/409 (73%), Positives = 349/409 (85%), Gaps = 1/409 (0%)
Query: 5 EPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE 64
+ R L C+ + L+VAVL+SGGVDSSVALRLLH+AGH CTAFYLKIWFQEDF NFW+E
Sbjct: 64 DERLLRCAAAGRAPLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSE 123
Query: 65 CPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF 124
CPW++D+KYA+AVCD++DVPLEVVHL+DEYW +VVS+II EYR GRTPNPDVLCNTRIKF
Sbjct: 124 CPWDDDLKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKF 183
Query: 125 GAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLK 184
GAF++AI ++ FDY+ASGHYA VVH S D PSVL+LSKDKVKDQTYFLSHLSQ QL+
Sbjct: 184 GAFLEAIENLGFDYIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLR 243
Query: 185 RLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEA 244
RL+FPLGCI+K+EVR+ A Q DLPN+DRKDSQGICFLGK+KFSEFV R IGEMEGV+LEA
Sbjct: 244 RLLFPLGCITKDEVRRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEA 303
Query: 245 ETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRV 304
ETGD+LG H GFWFYTIGQRQGLRLPGGPWYVVEK V+NNVVFVSRNYYS DK+RR FRV
Sbjct: 304 ETGDYLGTHRGFWFYTIGQRQGLRLPGGPWYVVEKGVQNNVVFVSRNYYSLDKRRRTFRV 363
Query: 305 GSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQ 364
GSL W S P +L+CKVRH P F++C + E + G I VV+LSEDDQGLAAGQ
Sbjct: 364 GSLNWFSNSGPTNNEQLKCKVRHSPEFHDCTVTQEQTSEHGV-ILVVRLSEDDQGLAAGQ 422
Query: 365 FAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKI 413
FAAFY+ C+GSG+IL+SWD+ FPVC +ALEIARMEDKS+LGKP+KI
Sbjct: 423 FAAFYRDNLCLGSGIILDSWDEMNFPVCARALEIARMEDKSRLGKPVKI 471
>gi|195652181|gb|ACG45558.1| tRNA methyltransferase [Zea mays]
Length = 486
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/418 (71%), Positives = 351/418 (83%), Gaps = 6/418 (1%)
Query: 11 CSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEED 70
C+ L+VAVL+SGGVDSSVALRLLH+AGH CTAFYLKIWFQEDF NFW+ECPW+ED
Sbjct: 67 CAAAGIAPLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDED 126
Query: 71 MKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDA 130
+KYA+AVCD++DVPLEVVHL+DEYW +VVS++I EYRCGRTPNPDVLCNTRIKFG+F++A
Sbjct: 127 LKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFLEA 186
Query: 131 ISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPL 190
I ++ FDY+ASGHYA VVH SA+ PSVL+LSKDK+KDQTYFLSHLSQ+QL+RL+FPL
Sbjct: 187 IENLGFDYIASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLLFPL 246
Query: 191 GCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250
GCI+K+EVR+ ATQ LPN+ RKDSQGICFLGK+KFSEFV RHIGE EG+ILEAE+GD+L
Sbjct: 247 GCITKDEVRRLATQMALPNQGRKDSQGICFLGKVKFSEFVERHIGEKEGIILEAESGDYL 306
Query: 251 GKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
G H GFWFYTIGQRQGLRLPGGPWYVVEKDV+NNVVFVSRNYYS DK+RR FRVGSL W
Sbjct: 307 GIHRGFWFYTIGQRQGLRLPGGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWF 366
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P +L+CKVRH P F++C L+ E E+ G+ + VV L+EDDQGLAAGQFAAFY
Sbjct: 367 DNFGPGNNEQLKCKVRHSPEFHDCTLVKERSEENGDAL-VVHLAEDDQGLAAGQFAAFYS 425
Query: 371 GTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIK-----VKPETPEEF 423
C+GSG+IL+SWD FPVC +ALEIA++ DKS LGKPI+I VKPE EE
Sbjct: 426 ENVCLGSGIILDSWDKMSFPVCSRALEIAKLADKSSLGKPIRIVNLEHIVKPEQQEEI 483
>gi|212721228|ref|NP_001131207.1| uncharacterized protein LOC100192515 [Zea mays]
gi|194690872|gb|ACF79520.1| unknown [Zea mays]
gi|414865088|tpg|DAA43645.1| TPA: tRNA methyltransferase [Zea mays]
Length = 486
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/418 (71%), Positives = 351/418 (83%), Gaps = 6/418 (1%)
Query: 11 CSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEED 70
C+ L+VAVL+SGGVDSSVALRLLH+AGH CTAFYLKIWFQEDF NFW+ECPW+ED
Sbjct: 67 CAAAGIAPLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDED 126
Query: 71 MKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDA 130
+KYA+AVCD++DVPLEVVHL+DEYW +VVS++I EYRCGRTPNPDVLCNTRIKFG+F++A
Sbjct: 127 LKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFLEA 186
Query: 131 ISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPL 190
I ++ FDY+ASGHYA VVH SA+ PSVL+LSKDK+KDQTYFLSHLSQ+QL+RL+FPL
Sbjct: 187 IENLGFDYIASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLLFPL 246
Query: 191 GCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250
GCI+K+EVR+ ATQ LPN+ RKDSQGICFLGK+KFSEFV RHIGE EG+ILEAE+GD+L
Sbjct: 247 GCITKDEVRRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGEKEGIILEAESGDYL 306
Query: 251 GKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
G H GFWFYTIGQRQGLRLPGGPWYVVEKDV+NNVVFVSRNYYS DK+RR FRVGSL W
Sbjct: 307 GIHRGFWFYTIGQRQGLRLPGGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWF 366
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P +L+CKVRH P F++C L+ E E+ G+ + VV L+EDDQGLAAGQFAAFY
Sbjct: 367 DNCGPGNNEQLKCKVRHSPEFHDCTLVKERSEENGDAL-VVHLAEDDQGLAAGQFAAFYS 425
Query: 371 GTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIK-----VKPETPEEF 423
C+GSG+IL+SWD FPVC +ALEIA++ DKS LGKPI+I VKPE EE
Sbjct: 426 ENVCLGSGIILDSWDKMSFPVCSRALEIAKLADKSSLGKPIRIVNLEHIVKPEQQEEI 483
>gi|326529305|dbj|BAK01046.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/424 (70%), Positives = 352/424 (83%), Gaps = 10/424 (2%)
Query: 5 EPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE 64
E + C+ + L+VAVLLSGGVDSSVALRLLH+AGHSCTAFYLKIWFQEDF NFW+E
Sbjct: 61 EEHLVRCAAAGRAPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFRNFWSE 120
Query: 65 CPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF 124
CPW++D+KYA+AVCD++DVPLEVVHL+DEYW +VVS++I EYR GRTPNPDVLCNTRIKF
Sbjct: 121 CPWDDDLKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHMISEYRNGRTPNPDVLCNTRIKF 180
Query: 125 GAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLK 184
GAF++AI ++ FDY+ASGHYA VVH + PSVL+LSKD+VKDQTYFLSHLSQ+QL+
Sbjct: 181 GAFLEAIENLGFDYIASGHYAHVVHPPVENAEGPSVLQLSKDEVKDQTYFLSHLSQSQLR 240
Query: 185 RLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEA 244
RL+FPLGCI+K+EVR A Q +LPN+ RKDSQGICFLGK+KFSEFV HIGE+EG++LEA
Sbjct: 241 RLLFPLGCITKDEVRSLAVQMNLPNQARKDSQGICFLGKVKFSEFVQAHIGEIEGILLEA 300
Query: 245 ETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRV 304
ETGD+LG H GFWFYTIGQRQGLRL GGPWYVVEKDV+NNVVFVSRNYYS DK+RR FRV
Sbjct: 301 ETGDYLGTHRGFWFYTIGQRQGLRLSGGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRV 360
Query: 305 GSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVED-----GGENIAVVQLSEDDQG 359
GSL W S P + RL+CKVRH P F+NC + E E+ ++ V+LSEDDQG
Sbjct: 361 GSLNWFSDSGPADNERLKCKVRHSPDFHNCTVTREQTEELVVNSNNGDVLAVRLSEDDQG 420
Query: 360 LAAGQFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIK----- 414
LAAGQFAAFY+ + C+GSG+IL+SWD+ FPVC KALE AR+EDKSKLGKP++I
Sbjct: 421 LAAGQFAAFYRDSACLGSGIILDSWDEMSFPVCAKALETARLEDKSKLGKPVRIMNLEHL 480
Query: 415 VKPE 418
VKPE
Sbjct: 481 VKPE 484
>gi|222624284|gb|EEE58416.1| hypothetical protein OsJ_09614 [Oryza sativa Japonica Group]
Length = 410
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 243/319 (76%), Positives = 278/319 (87%)
Query: 7 RYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECP 66
R L C+ + L+VAVL+SGGVDSSVALRLLH+AGH CTAFYLKIWFQEDF NFW+ECP
Sbjct: 66 RLLRCAAAGRAPLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECP 125
Query: 67 WEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGA 126
W++D+KYA+AVCD++DVPLEVVHL+DEYW +VVS+II EYR GRTPNPDVLCNTRIKFGA
Sbjct: 126 WDDDLKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGA 185
Query: 127 FMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRL 186
F++AI ++ FDY+ASGHYA VVH S D PSVL+LSKDKVKDQTYFLSHLSQ QL+RL
Sbjct: 186 FLEAIENLGFDYIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRL 245
Query: 187 IFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAET 246
+FPLGCI+K+EVR+ A Q DLPN+DRKDSQGICFLGK+KFSEFV R IGEMEGV+LEAET
Sbjct: 246 LFPLGCITKDEVRRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEAET 305
Query: 247 GDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
GD+LG H GFWFYTIGQRQGLRLPGGPWYVVEK V+NNVVFVSRNYYS DK+RR FRVGS
Sbjct: 306 GDYLGTHRGFWFYTIGQRQGLRLPGGPWYVVEKGVQNNVVFVSRNYYSLDKRRRTFRVGS 365
Query: 307 LKWLSGLPPEEISRLQCKV 325
L W S P +L+CK+
Sbjct: 366 LNWFSNSGPTNNEQLKCKL 384
>gi|168035636|ref|XP_001770315.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678346|gb|EDQ64805.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 376
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/376 (63%), Positives = 287/376 (76%), Gaps = 11/376 (2%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
L +AVLLSGGVDSSVALRLL +AGHSCTA+YLKIWFQEDFENFW+ECPWE+D+K A+AVC
Sbjct: 1 LNIAVLLSGGVDSSVALRLLCAAGHSCTAYYLKIWFQEDFENFWSECPWEDDLKNAQAVC 60
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
D+V V L VVH TDEYW VVS+ I E + GRTPNPD+LCNT +KFGAF+D I +FD
Sbjct: 61 DEVGVELRVVHFTDEYWNLVVSHSISEIQAGRTPNPDILCNTCVKFGAFLDHIKDEQFDR 120
Query: 139 VASGHYAKV--VHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
VASGHYA++ +++ + + L L D+VKDQTYFLSHL+Q QL RLIFPLG +K
Sbjct: 121 VASGHYARIRKIYNCDTGAEERTELLLCPDEVKDQTYFLSHLTQEQLSRLIFPLGGFTKA 180
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A L NK+RKDSQGICFLGK+KFS+F+A+H+GE EG +LEAETG+ LG H GF
Sbjct: 181 EVRQLAEVMGLYNKNRKDSQGICFLGKVKFSDFIAKHLGESEGRMLEAETGELLGLHKGF 240
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WFYT+GQR+GLR GPW+VV KD+ NNVVFVSR+Y+S DK+RR FRV S W SG PP
Sbjct: 241 WFYTMGQRKGLRFSNGPWFVVAKDIVNNVVFVSRHYFSEDKRRRSFRVDSFNWFSGFPPA 300
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENI---------AVVQLSEDDQGLAAGQFAA 367
+ S LQCKVRHGP FY C+L I+ E + AVV L+EDDQGLA GQ+AA
Sbjct: 301 DNSGLQCKVRHGPRFYTCSLDIQTDSTDSEAVTKESKSLTSAVVNLNEDDQGLAPGQYAA 360
Query: 368 FYQGTRCIGSGVILES 383
FYQ C+GS VI E+
Sbjct: 361 FYQNGVCLGSAVITET 376
>gi|223942189|gb|ACN25178.1| unknown [Zea mays]
gi|414865090|tpg|DAA43647.1| TPA: hypothetical protein ZEAMMB73_761275 [Zea mays]
Length = 329
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/327 (70%), Positives = 269/327 (82%), Gaps = 6/327 (1%)
Query: 102 IIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVL 161
+I EYRCGRTPNPDVLCNTRIKFG+F++AI ++ FDY+ASGHYA VVH SA+ PSVL
Sbjct: 1 MINEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFDYIASGHYAHVVHPSAENTEAPSVL 60
Query: 162 ELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFL 221
+LSKDK+KDQTYFLSHLSQ+QL+RL+FPLGCI+K+EVR+ ATQ LPN+ RKDSQGICFL
Sbjct: 61 QLSKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDEVRRLATQMGLPNQGRKDSQGICFL 120
Query: 222 GKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDV 281
GK+KFSEFV RHIGE EG+ILEAE+GD+LG H GFWFYTIGQRQGLRLPGGPWYVVEKDV
Sbjct: 121 GKVKFSEFVERHIGEKEGIILEAESGDYLGIHRGFWFYTIGQRQGLRLPGGPWYVVEKDV 180
Query: 282 KNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHV 341
+NNVVFVSRNYYS DK+RR FRVGSL W P +L+CKVRH P F++C L+ E
Sbjct: 181 QNNVVFVSRNYYSLDKRRRTFRVGSLNWFDNCGPGNNEQLKCKVRHSPEFHDCTLVKERS 240
Query: 342 EDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARM 401
E+ G+ + VV L+EDDQGLAAGQFAAFY C+GSG+IL+SWD FPVC +ALEIA++
Sbjct: 241 EENGDAL-VVHLAEDDQGLAAGQFAAFYSENVCLGSGIILDSWDKMSFPVCSRALEIAKL 299
Query: 402 EDKSKLGKPIKIK-----VKPETPEEF 423
DKS LGKPI+I VKPE EE
Sbjct: 300 ADKSSLGKPIRIVNLEHIVKPEQQEEI 326
>gi|302819257|ref|XP_002991299.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii]
gi|300140879|gb|EFJ07597.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii]
Length = 375
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/380 (62%), Positives = 293/380 (77%), Gaps = 6/380 (1%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
L+VAVL+SGGVDSSVALRLL +AGHSCTAFY+KIWFQEDF+NFW+ CPWEED+KYA+ VC
Sbjct: 1 LRVAVLVSGGVDSSVALRLLCAAGHSCTAFYIKIWFQEDFQNFWSSCPWEEDLKYAQDVC 60
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
D+V V LE+VHLTD YW VVS I E R GRTPNPD++CNT +KFGAF+D I +FD
Sbjct: 61 DEVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHIDRTKFDR 120
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VASGHYA+V +Q + L+LSKD+VKDQTYFLS LSQ QL L+FPLG ++K EV
Sbjct: 121 VASGHYARVERYVDEQGTIRARLKLSKDEVKDQTYFLSQLSQEQLGFLMFPLGSLAKPEV 180
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A +LPNKDRKDSQGICFLGK+KFS+F++RH+GE EG+++EAETG +GKH GFWF
Sbjct: 181 RQLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGEKEGLLIEAETGKTMGKHKGFWF 240
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
YTIGQR+G+ L GPWYVV KD + N+V++SR+Y+S DKKRR F V +L W S +P
Sbjct: 241 YTIGQRRGISLSHGPWYVVAKDSEKNLVYISRHYFSGDKKRRNFYVDNLSWFSTIPDPSC 300
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
++CKVRHGP F++C L +E + G A V+L +DQ LAAGQ+AAFY G C+GSG
Sbjct: 301 P-IKCKVRHGPSFHDCELEVEREKQG----ARVKLLHNDQALAAGQYAAFYAGETCLGSG 355
Query: 379 VILESWDD-QGFPVCEKALE 397
+I ES DD + V +ALE
Sbjct: 356 MITESMDDLESCTVSARALE 375
>gi|302812430|ref|XP_002987902.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii]
gi|300144291|gb|EFJ10976.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii]
Length = 375
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/380 (62%), Positives = 289/380 (76%), Gaps = 6/380 (1%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
L+VAVL+SGGVDSSVALRLL AGHSCTAFY+KIWFQEDF+NFW+ CPWEED+KYA+ VC
Sbjct: 1 LRVAVLVSGGVDSSVALRLLCGAGHSCTAFYIKIWFQEDFQNFWSSCPWEEDLKYAQDVC 60
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
D+V V LE+VHLTD YW VVS I E R GRTPNPD++CNT +KFGAF+D I +FD
Sbjct: 61 DEVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHIDRTKFDR 120
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VASGHYA+V +Q + L LSKD+VKDQTYFLS LSQ QL L+FPLG ++K EV
Sbjct: 121 VASGHYARVERYVDEQGTIRARLMLSKDEVKDQTYFLSQLSQEQLGFLMFPLGSLAKPEV 180
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A +LPNKDRKDSQGICFLGK+KFS+F++RH+GE EG+++EAETG +GKH GFWF
Sbjct: 181 RQLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGEKEGLLIEAETGKTMGKHKGFWF 240
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
YTIGQR+G+ L GPWYVV KD + N+V++SR+Y+S DKKRR F V +L W S +P
Sbjct: 241 YTIGQRRGISLSHGPWYVVAKDSEKNLVYISRHYFSGDKKRRNFYVDNLSWFSTIPDPSC 300
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
++CKVRHGP F++C L E + G A V+L DQ LAAGQ+AAFY G C+GSG
Sbjct: 301 P-IKCKVRHGPSFHDCELEFEREKQG----ARVKLLHSDQALAAGQYAAFYAGETCLGSG 355
Query: 379 VILESWDD-QGFPVCEKALE 397
+I ES DD + V +ALE
Sbjct: 356 MITESMDDLESCTVSARALE 375
>gi|302828090|ref|XP_002945612.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f.
nagariensis]
gi|300268427|gb|EFJ52607.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f.
nagariensis]
Length = 402
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/398 (55%), Positives = 264/398 (66%), Gaps = 11/398 (2%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
L VAVLLSGGVDSS+ALRLL +AGH+C AFYL+IWFQEDF NFW CPWEED++YA+ VC
Sbjct: 5 LNVAVLLSGGVDSSLALRLLRAAGHTCHAFYLQIWFQEDFRNFWGACPWEEDLQYARQVC 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS---SME 135
+ + VPLEVV LT EYW VVS +EE R GRTPNPD+ CN+R+KFGAF D +
Sbjct: 65 ESLGVPLEVVPLTTEYWDRVVSGSVEEIRAGRTPNPDMWCNSRVKFGAFYDYLDRTYGAA 124
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
FD VASGHYA+V L L+ D VKDQTYFL++LS QL R++FPLGC++K
Sbjct: 125 FDRVASGHYARVERVPRRSSPAEVRLLLTPDAVKDQTYFLANLSPRQLSRVMFPLGCLTK 184
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
+VRK A DL NK+RKDSQGICFLGK+KF EFV H+GE G ILEAETG LG H G
Sbjct: 185 SQVRKLAAAADLANKNRKDSQGICFLGKVKFHEFVREHLGEWPGPILEAETGQPLGLHQG 244
Query: 256 FWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL-- 313
+WFYT+GQR G++LPGGPWYVV KD N V VSR YY DK+R F G WL
Sbjct: 245 YWFYTVGQRGGIKLPGGPWYVVAKDTLRNAVLVSRQYYDADKQRNTFTCGPFNWLDAATR 304
Query: 314 --PPEEISRLQCKVRHGPGFYNCNLMIEHVED----GGENIAVVQLSEDDQGLAAGQFAA 367
P L KVRHGP Y C L + G ++ V L+++DQGLAAGQ+A
Sbjct: 305 PDPDPRAGPLFVKVRHGPSMYCCELRLHDARGDGSYGNDSYGTVVLAQNDQGLAAGQYAV 364
Query: 368 FYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKS 405
FYQ RC+G VI E+ D G EK A + K+
Sbjct: 365 FYQDGRCLGCAVIQETVDVGGAGRREKTGAPAAVSSKA 402
>gi|145352290|ref|XP_001420484.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580718|gb|ABO98777.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 394
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/375 (57%), Positives = 261/375 (69%), Gaps = 10/375 (2%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
MP K L+VAVLLSGGVDSSVAL LL +AGH C AFYL+IWFQEDF N W +CPWEED++
Sbjct: 1 MPGAKPLRVAVLLSGGVDSSVALALLRAAGHECVAFYLQIWFQEDFRNTWDQCPWEEDLR 60
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
A++VC++V VPLE V LTDEYW VV +EE R GRTPNPDVLCN+R+KFGAF + ++
Sbjct: 61 VAESVCERVGVPLETVPLTDEYWNLVVKDSVEEIRKGRTPNPDVLCNSRVKFGAFREWLA 120
Query: 133 SM---EFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFP 189
EFD VASGHYA V + + + L +S D KDQTYFL+ LSQ QL + FP
Sbjct: 121 RTHPGEFDRVASGHYAAVERADVGELAR---LVMSGDTFKDQTYFLADLSQEQLGSVCFP 177
Query: 190 LGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDF 249
+G + K E+R A +LPN RKDSQGICFLGK+KFSEF+A H+GEM G I+E E+G
Sbjct: 178 VGGMPKAEIRALAASAELPNAGRKDSQGICFLGKVKFSEFIAEHLGEMPGDIIEVESGKV 237
Query: 250 LGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKW 309
LGKH +WF+TIGQR GL L GGPWYV KD NN+V+V+R+YYS DK R F V W
Sbjct: 238 LGKHRAYWFHTIGQRSGLFLHGGPWYVAGKDCVNNIVYVTRDYYSLDKARDTFTVAGFNW 297
Query: 310 LSGLPP--EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+SG P E I L+ KVRHG Y C+ + V+ GE V + +DDQGLA GQ+A
Sbjct: 298 ISGQEPPLESIEGLRVKVRHGENIYACSFQFKDVD--GERCGEVNIGQDDQGLAPGQYAV 355
Query: 368 FYQGTRCIGSGVILE 382
FY G C+G G ILE
Sbjct: 356 FYDGDTCLGCGKILE 370
>gi|308809381|ref|XP_003082000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS)
[Ostreococcus tauri]
gi|116060467|emb|CAL55803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS)
[Ostreococcus tauri]
Length = 467
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/371 (57%), Positives = 262/371 (70%), Gaps = 10/371 (2%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K L+VAVLLSGGVDSSVAL LL +AGH C AFYL+IWFQEDF N W ECPWEED++ A+
Sbjct: 82 KPLRVAVLLSGGVDSSVALALLRAAGHECRAFYLQIWFQEDFRNTWEECPWEEDLRVAEG 141
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSM-- 134
VC +V V LE V LTD YW VVS +EE R GRTPNPDVLCN+R+KFGAF + ++
Sbjct: 142 VCARVGVELETVPLTDAYWNLVVSDSVEEIRRGRTPNPDVLCNSRVKFGAFREWLAKAHP 201
Query: 135 -EFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
EFD VASGHYA V + E + L +S D KDQTYFL++L+Q QL+ + FP+G +
Sbjct: 202 GEFDRVASGHYAAVERDAVTGE---ASLVMSGDAFKDQTYFLANLTQEQLRAVSFPVGGM 258
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K ++R AT +LPN RKDSQGICFLGK+KFSEF+A H+GEM G I+E ETG LGKH
Sbjct: 259 PKADIRSLATSAELPNAGRKDSQGICFLGKVKFSEFIAEHLGEMPGDIIEVETGKVLGKH 318
Query: 254 WGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
+WF+TIGQR GL L GGPWYV KD NNVV+V+R+YYS DK R F V W+SG
Sbjct: 319 RAYWFHTIGQRSGLFLHGGPWYVAGKDCVNNVVYVTRDYYSLDKSRDTFNVAGFNWISGK 378
Query: 314 PP--EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
P E I L+ KVRHG Y+C+ + ++ GE V +++DDQGLA GQ+A FY G
Sbjct: 379 EPDLENIEGLRVKVRHGENIYSCSFKFKEID--GERCGEVTINQDDQGLAPGQYAVFYDG 436
Query: 372 TRCIGSGVILE 382
+C+G G ILE
Sbjct: 437 PKCLGCGKILE 447
>gi|294463455|gb|ADE77257.1| unknown [Picea sitchensis]
Length = 323
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/325 (65%), Positives = 250/325 (76%), Gaps = 13/325 (4%)
Query: 134 MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
M+FDYVASGHYA V H S + E K SVL LS D+VKDQTYFLSHLSQ QL++L+FPLGC+
Sbjct: 1 MDFDYVASGHYAHVKHLSVECETKCSVLHLSADEVKDQTYFLSHLSQEQLRKLLFPLGCM 60
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
SKEEVR A + L NKDRKDSQG+CFLGK+KFSEFVARHIGEMEG++LEAETGDFLGKH
Sbjct: 61 SKEEVRNLAAEMGLLNKDRKDSQGLCFLGKVKFSEFVARHIGEMEGILLEAETGDFLGKH 120
Query: 254 WGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
GFWFYTIGQRQGLRL GGPWYVV KDV+NNVVFVSRNY+S DKKR LF V SLKW+ G
Sbjct: 121 RGFWFYTIGQRQGLRLSGGPWYVVAKDVENNVVFVSRNYFSLDKKRCLFHVSSLKWILGS 180
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMI---------EHVEDG--GENIAVVQLSEDDQGLAA 362
PP+++ +LQCKVRHGP FYNC++ + EH G + IA+V+LSEDDQGLAA
Sbjct: 181 PPKDLDKLQCKVRHGPKFYNCHMELVKGNLYKENEHQSLGETAQEIAIVRLSEDDQGLAA 240
Query: 363 GQFAAFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSKLGKPIKIKVKPETPEE 422
GQ+ AFY+G C+GSG+I++SW D FPV KALEIARM+DKS L +P+KIK + +
Sbjct: 241 GQYVAFYKGNTCLGSGIIIDSWGDNNFPVSSKALEIARMKDKSGLREPVKIKNLSDNTSK 300
Query: 423 FNSNKGVQSSRNLVNAQNSIAEKSN 447
N G SS+ V NS SN
Sbjct: 301 VTPNNGKISSQ--VEGLNSAKFLSN 323
>gi|159469071|ref|XP_001692691.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277944|gb|EDP03710.1| predicted protein [Chlamydomonas reinhardtii]
Length = 365
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/369 (58%), Positives = 258/369 (69%), Gaps = 11/369 (2%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K L+VAVLLSGGVDSS+ALRLL +AGH TAFYL+IWFQEDF NFW CPWEED++YA+
Sbjct: 3 KRLRVAVLLSGGVDSSLALRLLVAAGHDVTAFYLQIWFQEDFRNFWDACPWEEDLEYARK 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS---S 133
VC+ + V LEVV LT +YW VV+ + E R GRTPNPD+ CN+R+KFGAF D ++
Sbjct: 63 VCEALGVKLEVVPLTTQYWDRVVASSVAEIRAGRTPNPDIWCNSRVKFGAFYDHLAQRHG 122
Query: 134 MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
EFD VASGHYA+V ++A +E L L+ D VKDQTYFLS L+ QL R++FPLGC+
Sbjct: 123 AEFDRVASGHYARVAAAAAVEEE--VRLLLTPDAVKDQTYFLSGLTPDQLSRVMFPLGCL 180
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
+K +VRK A DL NK+RKDSQGICFLGK++FSEFV H+GE G +LEAETG LG H
Sbjct: 181 TKSQVRKLAAAADLANKNRKDSQGICFLGKVRFSEFVKEHLGEWHGPLLEAETGRPLGTH 240
Query: 254 WGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFD--KKRRLFRVGSLKWLS 311
G+WFYT+GQR G++LPGGPWYVV KD NVV VSR+YY + K R F G WL
Sbjct: 241 AGYWFYTVGQRGGIKLPGGPWYVVAKDTARNVVLVSRSYYDCEGGKARNAFTCGPFNWLH 300
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
P RL VRHGP Y C L + H G V L +DQGLA GQ+A FYQG
Sbjct: 301 ---PRLRPRLGAGVRHGPNMYRCTLRL-HDGSGAPLYGTVVLEANDQGLAPGQYAVFYQG 356
Query: 372 TRCIGSGVI 380
C+GS VI
Sbjct: 357 GTCLGSAVI 365
>gi|384252207|gb|EIE25683.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Coccomyxa
subellipsoidea C-169]
Length = 406
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/375 (54%), Positives = 261/375 (69%), Gaps = 11/375 (2%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
L++A+LLSGGVDSS+ALRLL +AGH TAFYL+IWFQEDF N+W CPWEED + VC
Sbjct: 37 LRIALLLSGGVDSSLALRLLKAAGHEVTAFYLQIWFQEDFRNYWDACPWEEDFAICQQVC 96
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME--- 135
+Q V L V LT++YW+ VVS+ + E + GRTPNPD+LCN+R+KFGAF + +
Sbjct: 97 EQAGVQLHTVPLTEQYWQRVVSHCLAEIKAGRTPNPDMLCNSRVKFGAFYEYLEQQHGAG 156
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
FD +ASGHYA+++ + P L L+ D +KDQTYFL+HL+Q QL R IFPLG ++K
Sbjct: 157 FDRIASGHYARIIRDPQNPS-APVELALTPDPIKDQTYFLAHLTQQQLSRTIFPLGPLTK 215
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR++A LPN+ R+DSQGICFLGK++FSEFV H+G G I+E ETG+ LG H G
Sbjct: 216 GEVRRWAAALQLPNQARRDSQGICFLGKVRFSEFVREHLGTWPGAIVEEETGELLGHHEG 275
Query: 256 FWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
FWFYT+GQR+G+ L GGPW+V KD NVV+VSRNYY D++R F G W++
Sbjct: 276 FWFYTLGQRKGIYLSGGPWFVSRKDPDANVVYVSRNYYDEDRRRDSFVCGGFNWIALERM 335
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
+ L CKVRHGP Y C + E + GGE A V L +DQGLAAGQFA FYQ C+
Sbjct: 336 DPARPLFCKVRHGPNMYRCTM--EELP-GGE--ARVVLEGNDQGLAAGQFACFYQDGVCL 390
Query: 376 GSGVILES--WDDQG 388
GS VIL+ DD+G
Sbjct: 391 GSAVILQGQCCDDRG 405
>gi|255086163|ref|XP_002509048.1| predicted protein [Micromonas sp. RCC299]
gi|226524326|gb|ACO70306.1| predicted protein [Micromonas sp. RCC299]
Length = 478
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 222/446 (49%), Positives = 261/446 (58%), Gaps = 78/446 (17%)
Query: 11 CSMPHQKG---LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPW 67
C P G LKVAVLLSGGVDSSVAL LL +AGH C AFYL+IWF EDF N W CPW
Sbjct: 5 CEPPALNGGRKLKVAVLLSGGVDSSVALTLLKAAGHDCVAFYLQIWFVEDFRNTWDACPW 64
Query: 68 EEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAF 127
E+D+ A+ VC+ +DVPLEVV LT++YW VV + IE+ GRTPNPD+LCN+R+KFGAF
Sbjct: 65 EDDLNVARGVCEHLDVPLEVVPLTNQYWDLVVKHSIEQISRGRTPNPDMLCNSRVKFGAF 124
Query: 128 MDAISSM---EFDYVASGHYAKV----------VHS----SADQEYKPSVLELSKDKVKD 170
D + + EF VASGHYA + +H + P L +S D KD
Sbjct: 125 TDWLETNRAGEFHRVASGHYAAMDRVQGILADTLHGDDGMNGTSRRHPCRLIMSGDARKD 184
Query: 171 QTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFV 230
QTYFL+HLSQ QL L FP+G + K ++R+ A LPN +RKDSQGICFLGK+KFSEFV
Sbjct: 185 QTYFLAHLSQRQLAALTFPIGGLPKTQIREIARSAGLPNAERKDSQGICFLGKVKFSEFV 244
Query: 231 ARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSR 290
A H+GE G I+E ETG LG H GFWF+TIGQR GL L GGPWYV KDV NVV+V+R
Sbjct: 245 AEHLGERPGAIVELETGTRLGTHSGFWFHTIGQRSGLGLSGGPWYVAAKDVPGNVVYVTR 304
Query: 291 NYYSFDKKRRLFRVGSLKWLSGLPPE------------EISRLQ---------------- 322
+YYS DK+R FRVG WLSG P E +RL
Sbjct: 305 DYYSVDKERNTFRVGEFSWLSGTAPASDADGYALGHGGEGARLAWACDGDGCDDDGATSR 364
Query: 323 --------------------------CKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSED 356
CKVRHG Y C L + D G V + D
Sbjct: 365 ETTSSRGVNGGASASEVDATKTSELYCKVRHGENRYRCTLRFDIDGDAG----TVVIEAD 420
Query: 357 DQGLAAGQFAAFYQGTRCIGSGVILE 382
DQGLAAGQFA FY C+G GVILE
Sbjct: 421 DQGLAAGQFAVFYDRRVCLGCGVILE 446
>gi|307103568|gb|EFN51827.1| hypothetical protein CHLNCDRAFT_139672 [Chlorella variabilis]
Length = 417
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/384 (53%), Positives = 255/384 (66%), Gaps = 15/384 (3%)
Query: 5 EPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE 64
P L P L VA+LLSGGVDSS+AL LL +AGH TAFYL+IWFQEDF NFW
Sbjct: 39 HPELLLGCEPGAAPLTVALLLSGGVDSSLALHLLVAAGHRVTAFYLQIWFQEDFRNFWGA 98
Query: 65 CPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF 124
CPWEED++Y +AVC+++ V L+VV LT++YW VV++ I E R GRTPNPDVLCN+R+KF
Sbjct: 99 CPWEEDLEYCRAVCERLGVELQVVPLTEQYWDRVVAHCITEIRHGRTPNPDVLCNSRVKF 158
Query: 125 GAFMDAISSME---FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQA 181
GAF + +S+ FD +ASGHYA++ + L L+ D +KDQTYFL+HLSQ
Sbjct: 159 GAFYEHLSAQAIGTFDRIASGHYARLERPGTAAA---ARLALTPDAIKDQTYFLAHLSQH 215
Query: 182 QLKRLIFPLGCISKEE-----VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGE 236
QL R +FPLG ++K + VR A DLPNK RKDSQGICFLGK+KF+EF+ +H+GE
Sbjct: 216 QLARALFPLGHLTKPQARGSSVRALAAAADLPNKARKDSQGICFLGKVKFNEFIRKHLGE 275
Query: 237 MEGVILEAETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFD 296
G I+E E+ + +G H GFWF+T+GQR+G+ L GGPWYV K NVV+VSR Y+ D
Sbjct: 276 WPGPIVEEESNEVVGFHHGFWFHTVGQRKGIALSGGPWYVTRKHPDTNVVYVSRQYHESD 335
Query: 297 KKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSED 356
K R F S W P+ L CKVRHGP Y C L +E G V L +
Sbjct: 336 KLRNSFSCHSFSWCGVARPDPSRLLYCKVRHGPHMYACQLSLE----PGGGAGHVVLGGN 391
Query: 357 DQGLAAGQFAAFYQGTRCIGSGVI 380
DQGLAAGQ+A FYQ C+GS VI
Sbjct: 392 DQGLAAGQYAVFYQDGACLGSAVI 415
>gi|303284375|ref|XP_003061478.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456808|gb|EEH54108.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 384
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/375 (55%), Positives = 250/375 (66%), Gaps = 32/375 (8%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+KVAVLLSGGVDSSVAL LL +AGH TAFYL+IWFQEDF N+W +CPWE+D+ A+AVC
Sbjct: 1 MKVAVLLSGGVDSSVALTLLQAAGHDVTAFYLQIWFQEDFRNYWDQCPWEDDLSEARAVC 60
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME--- 135
D + VPLEVV LT YW VVS+ +EE GRTPNPD+LCN+R+KFGAF + ++
Sbjct: 61 DLLRVPLEVVPLTRPYWDLVVSHSVEEISRGRTPNPDMLCNSRVKFGAFREWLAETHPGR 120
Query: 136 FDYVASGHYAKVVHSSA--------DQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI 187
F VASGHYA + L +S D KDQTYFL+ LSQAQL+ L
Sbjct: 121 FARVASGHYAALERPGGPFGGAGDDADADGKVKLVMSGDAHKDQTYFLAALSQAQLEGLS 180
Query: 188 FPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETG 247
FP+G + K E+R A + LPN +RKDSQGICFLGK+KFSEFVA H+GE G I+E ETG
Sbjct: 181 FPIGGLPKAEIRDIARRAGLPNANRKDSQGICFLGKVKFSEFVAEHLGERPGKIVEIETG 240
Query: 248 DFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
+G+H GFWF+TIGQR GL L GGPWYV KD K N+VF++++YY+ DK+RR F
Sbjct: 241 LEIGEHRGFWFHTIGQRSGLGLSGGPWYVCGKDAKRNIVFITKDYYAGDKERRAF----- 295
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
RL CKVRHG Y C L + +GG V L +DQGLAAGQFA
Sbjct: 296 ------------RLYCKVRHGERRYRCTLKFDPDGEGGR----VVLDANDQGLAAGQFAV 339
Query: 368 FYQGTRCIGSGVILE 382
FY G C+GSGVI E
Sbjct: 340 FYDGRECLGSGVIAE 354
>gi|412987882|emb|CCO19278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bathycoccus prasinos]
Length = 548
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/381 (52%), Positives = 254/381 (66%), Gaps = 23/381 (6%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K L+VAVLLSGGVDSSVAL LL +AGH C AFYL+IWFQ+DF NFW +CPWEED+ AK
Sbjct: 173 KKLRVAVLLSGGVDSSVALSLLRAAGHECVAFYLQIWFQDDFRNFWDQCPWEEDVMVAKR 232
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME- 135
VC+++ VPL VH TD+YW VV +EE + G+TPNPD+LCN+R+KFGAF + + + E
Sbjct: 233 VCERLRVPLRTVHFTDDYWNLVVKQSVEEIQRGKTPNPDILCNSRVKFGAFREWLDTNEE 292
Query: 136 ----FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
FD +ASGHYA + D+ L S D KDQTYFL+HLS QL++ +FP+G
Sbjct: 293 EIGTFDRIASGHYAALERKEDDE--TDVKLVASGDARKDQTYFLAHLSSWQLQKAMFPIG 350
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
ISK +R+ A L N DRKDSQGICFLGK+KFSEF+ H+G G I E E+G LG
Sbjct: 351 GISKPRIREIAENLSLVNADRKDSQGICFLGKVKFSEFIEEHLGTKPGEIREIESGQLLG 410
Query: 252 KHWGFWFYTIGQRQGLRLPG----GPWYVVEKDVKNNVVFVSRNYYS--FDKKRRLFRVG 305
H GFWF+T+GQRQGL+L GPWYV KDV+ NVVF+SR Y+S +++R F
Sbjct: 411 THKGFWFHTVGQRQGLKLDKRAHEGPWYVHSKDVEKNVVFISRAYHSEENERERDSFECE 470
Query: 306 SLKWLSGLPPEEISRLQ-CKVRHGPGFYNCNLMIEHVEDGGENIA-----VVQLSEDDQG 359
L W +++SR++ CKVRHG +Y + HVE N A +++ DQG
Sbjct: 471 DLSWCRDSDADQLSRIERCKVRHGESYYR----VLHVEPTTPNTAENQKLKIKIDGKDQG 526
Query: 360 LAAGQFAAFYQGTRCIGSGVI 380
LA GQ+A FY G+ C+G GVI
Sbjct: 527 LAKGQYAVFYGGSECLGCGVI 547
>gi|385811327|ref|YP_005847723.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Ignavibacterium album JCM 16511]
gi|383803375|gb|AFH50455.1| Putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Ignavibacterium album JCM 16511]
Length = 349
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/364 (53%), Positives = 253/364 (69%), Gaps = 15/364 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+KVAVLLSGGVDSSVALRLL H TAFYLKIW Q++F +F +CPWEED+ +A AVC
Sbjct: 1 MKVAVLLSGGVDSSVALRLLKDEEHDVTAFYLKIWLQDEF-SFLGDCPWEEDLNFATAVC 59
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
Q +VPLEV+ L EYW+NVVSY I E + GRTPNPD+ CN IKFG F + I F+
Sbjct: 60 KQANVPLEVLPLQTEYWENVVSYTIAEIKEGRTPNPDMFCNRLIKFGEFYNKIDK-SFEK 118
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VASGHYA+V +D +Y +L+ S D +KDQTYFL++L+Q QL R +FP+G +K+++
Sbjct: 119 VASGHYARV--EKSDNKY---LLKTSPDPIKDQTYFLAYLTQEQLSRALFPIGKFTKKQI 173
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + LPN +RKDSQGICFLG+I F+EF+ H+GE+ G I+E ET GKH G++F
Sbjct: 174 RALAKNYQLPNMERKDSQGICFLGRISFNEFIKHHLGELPGAIVEMETNQIRGKHKGYYF 233
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
YTIGQR GL L GGPWYVV+KDVKNN++++S+ Y ++ R+ F V W++ P
Sbjct: 234 YTIGQRSGLGLGGGPWYVVKKDVKNNIIYISKQDYH-NRARKEFAVTKFNWIADKPTSG- 291
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
L+ K+RHG FYNC L E +N V LS++DQG+A GQFA FY+ C+G
Sbjct: 292 ENLKVKIRHGAKFYNCVLEYE------DNNGRVILSQEDQGIAPGQFAVFYKDDVCLGGS 345
Query: 379 VILE 382
+I E
Sbjct: 346 IISE 349
>gi|149197386|ref|ZP_01874437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lentisphaera araneosa HTCC2155]
gi|149139404|gb|EDM27806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lentisphaera araneosa HTCC2155]
Length = 353
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/365 (52%), Positives = 250/365 (68%), Gaps = 17/365 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLL-HSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+A+LLSGGVDSSVALRLL GH TAFYLKIW +++ F ECPWEEDM+Y +AV
Sbjct: 1 MKIAMLLSGGVDSSVALRLLKEEGGHEITAFYLKIWLEDEL-AFLGECPWEEDMQYVRAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C+++D+PL+VV L EY VVSY++ E + GRTP+PD+LCN RIKFGAF DAI +D
Sbjct: 60 CEELDIPLQVVPLQKEYMDRVVSYVLAELKQGRTPSPDILCNERIKFGAFFDAIDET-YD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLEL--SKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
VA+GHYA+V QE + + EL + D VKDQTYFLS LSQAQL R +FP+G + K
Sbjct: 119 KVATGHYAQV------QENEEGIFELLRAPDPVKDQTYFLSSLSQAQLSRALFPIGSLMK 172
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
VR+ A ++DLPNK RKDSQGICFLGKI + +FV H+GE +G I+E ET + G+H G
Sbjct: 173 SRVRELAEEYDLPNKVRKDSQGICFLGKISYPDFVRFHLGEKQGDIIEIETDEKKGEHKG 232
Query: 256 FWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
WF+TIGQR GL L GGPWYVV+KD+ N+V++S D+ R V ++ W SG P
Sbjct: 233 VWFHTIGQRSGLGLSGGPWYVVKKDLATNIVYISHKNGLEDQLRDEVTVNTVHWTSGKFP 292
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
+ + L+ K+RHGP +M D GE+ ++L+E D+G+A GQ FY C+
Sbjct: 293 KN-TNLKVKLRHGPQLVEARIM-----DLGESRVFIKLAEKDKGIAPGQSCIFYDDLICL 346
Query: 376 GSGVI 380
G GVI
Sbjct: 347 GRGVI 351
>gi|406968333|gb|EKD93203.1| hypothetical protein ACD_28C00207G0002 [uncultured bacterium]
Length = 355
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/367 (52%), Positives = 248/367 (67%), Gaps = 18/367 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+K+AVL SGGVDSSVAL LL GH T FYLKIW +++ ++ ECPWEED+ Y +A+C
Sbjct: 1 MKIAVLASGGVDSSVALHLLKEQGHELTVFYLKIWLEDEL-SYLGECPWEEDLGYVRAIC 59
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
D++DVPL+V+ L EYW V+ Y + E + GRTPNPDVLCN +IKFG F + I + F+
Sbjct: 60 DRLDVPLQVIPLQKEYWDEVIRYTLVEVKAGRTPNPDVLCNQKIKFGKFYERIDA-SFEK 118
Query: 139 VASGHYAKVVHSSADQEYKPSV--LELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
VA+GHYA+V E K V L+ +KD KDQTYFL+HLSQ+QL R +FP+G K
Sbjct: 119 VATGHYARV-------EEKEGVFFLKTAKDTWKDQTYFLAHLSQSQLSRALFPIGDYLKS 171
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A +++LPN DRKDSQGICFLG I F EFV H+GE +G ++E ETG LG H G+
Sbjct: 172 EVRELAKKYELPNADRKDSQGICFLGSIPFDEFVKHHLGEKQGELVEFETGKVLGCHQGY 231
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
W+YTIGQR+G+ L GGPW+VV KD+ N VF+S +Y+ DK R FR +L W+SG P
Sbjct: 232 WYYTIGQRKGIGLSGGPWFVVSKDIVTNRVFISNHYHVEDKPRNCFRAHALHWISGEPVH 291
Query: 317 EIS--RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
+ L+ K+RHG Y+ L +G E + V+L DQGLA GQFA FY+G C
Sbjct: 292 TQAPLPLKVKIRHGQQRYDATLKW----NGNEEVQ-VELVGSDQGLAPGQFAVFYEGEIC 346
Query: 375 IGSGVIL 381
G I+
Sbjct: 347 RGIATIV 353
>gi|216264880|ref|ZP_03436872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 156a]
gi|215981353|gb|EEC22160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 156a]
Length = 355
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 169/365 (46%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQRKES-----KFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD+K N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINN-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|226320481|ref|ZP_03796047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 29805]
gi|226234123|gb|EEH32838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 29805]
Length = 355
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 169/365 (46%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYIEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQRKES-----KFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD+K N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|387827582|ref|YP_005806864.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi N40]
gi|312149442|gb|ADQ29513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi N40]
Length = 355
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 169/365 (46%), Positives = 249/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAT 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQRKES-----KFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD+K N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|387826318|ref|YP_005805771.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi JD1]
gi|312148210|gb|ADQ30869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi JD1]
Length = 355
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 169/365 (46%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQIKES-----KFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD+K N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|343127983|ref|YP_004777914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia bissettii DN127]
gi|342222671|gb|AEL18849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia bissettii DN127]
Length = 355
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 169/365 (46%), Positives = 251/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL + + G+S +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYKIINKGYSNIKCYYLKIWLEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ +EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQEEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQIKEGN-----FFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++ +P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDIPS-N 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ D GL+ GQFA FY+ T+C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDNGLSPGQFAIFYKNTKCLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|224532386|ref|ZP_03673016.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23]
gi|225548926|ref|ZP_03769903.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 94a]
gi|225550036|ref|ZP_03770997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 118a]
gi|224512693|gb|EEF83064.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23]
gi|225369495|gb|EEG98947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 118a]
gi|225370529|gb|EEG99965.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 94a]
Length = 355
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQRKES-----KFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|15595027|ref|NP_212816.1| tRNA-specific 2-thiouridylase MnmA [Borrelia burgdorferi B31]
gi|223889488|ref|ZP_03624074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 64b]
gi|226321380|ref|ZP_03796907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi Bol26]
gi|8134738|sp|O51625.1|MNMA_BORBU RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|2688619|gb|AAC67035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi B31]
gi|223885174|gb|EEF56278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 64b]
gi|226233176|gb|EEH31928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi Bol26]
Length = 355
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQIKES-----KFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|195941501|ref|ZP_03086883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 80a]
Length = 355
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 167/365 (45%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQRKES-----KFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDR+DSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRRDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|221217912|ref|ZP_03589379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 72a]
gi|221192218|gb|EEE18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 72a]
Length = 355
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 249/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQRKES-----KFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD+ N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLGKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|218249186|ref|YP_002375182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi ZS7]
gi|226704767|sp|B7J2N7.1|MNMA_BORBZ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|218164374|gb|ACK74435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi ZS7]
Length = 355
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQIKES-----KFLLKQAKDKIKDQSYFLSHLSQKQISKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|224532293|ref|ZP_03672925.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia valaisiana VS116]
gi|224511758|gb|EEF82164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia valaisiana VS116]
Length = 355
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 254/365 (69%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL + + G++ +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSVALYKIINKGYTNIKCYYLKIWLEDEL-SYIGNCPWQEDLNYIEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY +EE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTLEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + K +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKI-----QAKEKIFLLKQAKDKIKDQSYFLSHLSQKQMSKLCFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEEKGNIIEKETGKIMGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N+++VS N + +R F V + W++ + P++
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYVSHNENYLKQAKRKFLVHEIHWINDI-PQD 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L+++D G++ GQFA FY+ T+C+G
Sbjct: 293 FKNFKIKIRHGEKKYSCKLKLI-----SNNLIEISLNKEDHGISPGQFAIFYKNTKCLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|225551719|ref|ZP_03772662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia sp. SV1]
gi|225371514|gb|EEH00941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia sp. SV1]
Length = 355
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 249/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I++ ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINN-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ QL +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQRKES-----KFLLKQAKDKIKDQSYFLSHLSQKQLSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++ P
Sbjct: 234 FFTAGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGKKKYSCKLQLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|224533363|ref|ZP_03673957.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a]
gi|224513528|gb|EEF83885.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a]
Length = 355
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 169/365 (46%), Positives = 249/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL + G+S +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIIKKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQIKES-----KFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|216263504|ref|ZP_03435499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia afzelii ACA-1]
gi|215980348|gb|EEC21169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia afzelii ACA-1]
Length = 355
Score = 363 bits (933), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 253/365 (69%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ S +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYTSIKCYYLKIWLEDEL-SYIGSCPWQEDLNYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E+++ EY+ VVSY I+E + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CSKFNVPYEIINFQKEYYNKVVSYTIKELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + D+++ L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKI--QTKDKKF---FLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNK+RKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++G P +
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWING-TPSD 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + +N+ + L++ D G++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----AKNLIEISLNKKDYGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|111115515|ref|YP_710133.1| tRNA-specific 2-thiouridylase MnmA [Borrelia afzelii PKo]
gi|384207171|ref|YP_005592893.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Borrelia afzelii PKo]
gi|122956331|sp|Q0SMH1.1|MNMA_BORAP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|110890789|gb|ABH01957.1| hypothetical protein BAPKO_0726 [Borrelia afzelii PKo]
gi|342857055|gb|AEL69903.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia afzelii PKo]
Length = 355
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 253/365 (69%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ S +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYTSIKCYYLKIWLEDEL-SYIGSCPWQEDLNYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E+++ EY+ VVSY I+E + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CSKFNVPYEIINFQKEYYNKVVSYTIKELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + D+++ L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKI--QTKDKKF---FLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNK+RKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++G P +
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWING-TPSD 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + +N+ + L++ D G++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----AKNLIEISLNKKDYGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|219684476|ref|ZP_03539420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia garinii PBr]
gi|219672465|gb|EED29518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia garinii PBr]
Length = 355
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 169/365 (46%), Positives = 251/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL + + G++ +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSVALYKVINKGYTNIKCYYLKIWLEDEL-SYIGNCPWQEDLNYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYA++ + K L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYARI-----QIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLCFPLGTLFKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIVEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD+K N++++S N + +R F V + W++G+P +
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINGMPS-D 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ D G++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLRLI-----TNNLIEICLNKKDHGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|410679467|ref|YP_006931869.1| tRNA-specific 2-thiouridylase MnmA [Borrelia afzelii HLJ01]
gi|408536855|gb|AFU74986.1| tRNA-specific 2-thiouridylase MnmA [Borrelia afzelii HLJ01]
Length = 355
Score = 360 bits (925), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 167/365 (45%), Positives = 251/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ S +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYTSIKCYYLKIWLEDEL-SYIGSCPWQEDLNYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E+++ EY+ VVSY I+E + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CSKFNVPYEIINFQKEYYNKVVSYTIKELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + D+++ L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKI--QTKDKKF---FLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNK+RKDSQGICFLGKIK+ EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYDEFIKYHLGEKKGNIIEKETGKIIGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++ P +
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWIND-TPSD 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + +N+ + L++ D G++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----AKNLIEISLNKKDYGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|386854084|ref|YP_006203369.1| TRNA-specific 2-thiouridylase MnmA [Borrelia garinii BgVir]
gi|365194118|gb|AEW69016.1| MnmA [Borrelia garinii BgVir]
Length = 355
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 166/365 (45%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSS+AL + + G++ +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSIALYKVINKGYTNIKCYYLKIWLEDEL-SYIGNCPWQEDLNYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYA++ + K L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYARI-----QIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLYFPLGTLFKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKLIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + + F V + W++G+P +
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKHKFLVHEIHWINGMPS-D 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ D G++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLRLI-----TNNLIEICLNKKDHGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|187918538|ref|YP_001884101.1| tRNA-specific 2-thiouridylase MnmA [Borrelia hermsii DAH]
gi|119861386|gb|AAX17181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia hermsii DAH]
Length = 357
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 173/366 (47%), Positives = 246/366 (67%), Gaps = 15/366 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL + G+ + +YLKIW +++ ++ ECPWEED+ Y +AV
Sbjct: 4 MKIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDEL-SYIGECPWEEDINYVEAV 62
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E++ L DEY+K VV+Y IEE + G TP+PD+ CN RIKFGAF D I+ +D
Sbjct: 63 CTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINE-HYD 121
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+ +GHYAK+ + + Y +L+ +KDK+KDQ+YFLSHLS+ Q+ +L FPLG + K E
Sbjct: 122 LIVTGHYAKI--ENKNNHY---ILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTE 176
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
+R+ A + DLPNK+RKDSQGICFLGKIK+ EF+ H+GE++G I+E ETG LG H G+W
Sbjct: 177 IRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYW 236
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+TIGQR+G++L GPW+V EKD++NN++++S + + + F V W++ P
Sbjct: 237 FFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWIN--KPVN 294
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
L K+RHG C +E +I V L E D G++ GQF FYQ C+G
Sbjct: 295 NIDLSAKIRHGEKKIKCK-----IEMLKNDIIKVDLEEKDYGISPGQFCIFYQEDECLGG 349
Query: 378 GVILES 383
IL++
Sbjct: 350 AQILQT 355
>gi|51598937|ref|YP_073125.1| tRNA-specific 2-thiouridylase MnmA [Borrelia garinii PBi]
gi|73920033|sp|Q660I8.1|MNMA_BORGA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|51573508|gb|AAU07533.1| conserved hypothetical protein [Borrelia garinii PBi]
Length = 355
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 165/365 (45%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSS+AL + + G++ +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSIALYKVINKGYTNIKCYYLKIWLEDEL-SYIGNCPWQEDLNYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ ++P E+++ EY+ VV Y IEE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CNKFNIPYEIINFQKEYYNKVVIYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYA++ + K L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYARI-----QIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLYFPLGTLFKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIVEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++G+P +
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINGMPS-D 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ D G++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLRLI-----TNNLIEIFLNKKDHGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|408671291|ref|YP_006871362.1| tRNA-specific 2-thiouridylase MnmA [Borrelia garinii NMJW1]
gi|407241113|gb|AFT83996.1| tRNA-specific 2-thiouridylase MnmA [Borrelia garinii NMJW1]
Length = 355
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 166/365 (45%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSS+AL + + G++ +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSIALYKVINKGYTNIKCYYLKIWLEDEL-SYIGNCPWQEDLNYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYA++ + K L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYARI-----QIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLYFPLGTLFKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKLIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + + F V + W++G+P +
Sbjct: 234 FFTVGQRRGIKLGNGPWFVIEKDLEKNIIYISHNENYLKQAKHKFLVHEIHWINGMPS-D 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ D G++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLRLI-----TNNLIEICLNKKDHGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|299470175|emb|CBN78203.1| tRNA-methyltransferase [Ectocarpus siliculosus]
Length = 478
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 194/420 (46%), Positives = 252/420 (60%), Gaps = 65/420 (15%)
Query: 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82
+LLSGGVDSSVA+RLL G+ AFYLKIW +++ + ECPWEED+ YA AVC+Q
Sbjct: 1 MLLSGGVDSSVAMRLLLDQGYKIRAFYLKIWLEDELAHL-NECPWEEDLAYATAVCEQAG 59
Query: 83 VPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASG 142
VPLEVV L EYW VVSY + E R GRTPNPDV+CN+RIKFG F D + F +VA+G
Sbjct: 60 VPLEVVPLQREYWDQVVSYTVREAREGRTPNPDVMCNSRIKFGMFYDHVGK-HFRHVATG 118
Query: 143 HYAKVVHS--SADQEYKPS-----------------------------VLELSKDKVKDQ 171
HYA++ HS S D PS L LS D VKDQ
Sbjct: 119 HYARLEHSGGSDDANATPSDRSAAAAAAAAGTEEPPVRVAAGSDRGRVRLLLSPDAVKDQ 178
Query: 172 TYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVA 231
TYFL L+Q QL++ +FPLG +K+++R+ A +DLP K RKDSQGICFLGK+KF EF+
Sbjct: 179 TYFLCALTQDQLRKALFPLGVYTKDQIRELAESYDLPTKHRKDSQGICFLGKLKFDEFLQ 238
Query: 232 RHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLR---LPG----GPWYVVEKDVKNN 284
++G G I++ +TG +G+H G WF+TIGQR+G+ +PG GPWYV +KD++ N
Sbjct: 239 HYLGTSPGAIVD-QTGRHIGEHKGLWFHTIGQRKGVGPGLVPGVVNLGPWYVADKDMERN 297
Query: 285 VVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEIS-----RLQCKVRHGPGFYNCNLMI- 338
V+ V+ + + R +FRV +L+W+SG PP E++ RL+ K RHGP +C L +
Sbjct: 298 VLVVTNDREAIASPREVFRVEALQWISGRPPAELARDRSMRLRVKTRHGPQMRDCLLRLV 357
Query: 339 ----------------EHVED--GGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
VED G V L D LA GQFAAFY G C+GSGV+
Sbjct: 358 PEVAPGDSGGRAGGAEATVEDRVGSPTRGYVNLDSKDSALAPGQFAAFYLGGECVGSGVM 417
>gi|205814822|sp|B2S125.2|MNMA_BORHD RecName: Full=tRNA-specific 2-thiouridylase MnmA
Length = 354
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 173/366 (47%), Positives = 246/366 (67%), Gaps = 15/366 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL + G+ + +YLKIW +++ ++ ECPWEED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDEL-SYIGECPWEEDINYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E++ L DEY+K VV+Y IEE + G TP+PD+ CN RIKFGAF D I+ +D
Sbjct: 60 CTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINE-HYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+ +GHYAK+ + + Y +L+ +KDK+KDQ+YFLSHLS+ Q+ +L FPLG + K E
Sbjct: 119 LIVTGHYAKI--ENKNNHY---ILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
+R+ A + DLPNK+RKDSQGICFLGKIK+ EF+ H+GE++G I+E ETG LG H G+W
Sbjct: 174 IRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+TIGQR+G++L GPW+V EKD++NN++++S + + + F V W++ P
Sbjct: 234 FFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWIN--KPVN 291
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
L K+RHG C +E +I V L E D G++ GQF FYQ C+G
Sbjct: 292 NIDLSAKIRHGEKKIKCK-----IEMLKNDIIKVDLEEKDYGISPGQFCIFYQEDECLGG 346
Query: 378 GVILES 383
IL++
Sbjct: 347 AQILQT 352
>gi|224534479|ref|ZP_03675055.1| tRNA-methyltransferase [Borrelia spielmanii A14S]
gi|224514156|gb|EEF84474.1| tRNA-methyltransferase [Borrelia spielmanii A14S]
Length = 355
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL + S G++ +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSVALYRIISKGYTNVKCYYLKIWLEDEL-SYIGSCPWQEDLNYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY I+E + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIKELKSGNTPSPDIFCNQRIKFGAFFEKINK-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ ++ K L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKI-----QKKDKKIFLKQAKDKIKDQSYFLSHLSQNQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNK+RKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKSINLPNKNRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGRIIGIHDGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++G P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWING-TPLN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ D G++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLIEIYLNKKDCGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>gi|119953460|ref|YP_945669.1| tRNA-specific 2-thiouridylase MnmA [Borrelia turicatae 91E135]
gi|254811445|sp|A1R0A7.1|MNMA_BORT9 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|119862231|gb|AAX17999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia turicatae 91E135]
Length = 354
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 171/366 (46%), Positives = 248/366 (67%), Gaps = 15/366 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+++AVLLSGGVDSSVAL ++ G+ + +YLKIW +++ ++ ECPW+ED+ Y +AV
Sbjct: 1 MQIAVLLSGGVDSSVALYIMIQKGYKNIKCYYLKIWLEDEL-SYIGECPWKEDINYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E++ L DEY+K VV+Y IEE + G TP+PD+ CN RIKFGAF D I+ +D
Sbjct: 60 CKKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINE-HYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+ +GHYAK+ + + Y +L+ +KDK+KDQ+YFLSHLS+ Q+ +L FPLG + K E
Sbjct: 119 LIVTGHYAKI--ENKNDHY---ILKQAKDKIKDQSYFLSHLSRKQISKLHFPLGDLLKTE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
+R+ A + DLPNK+RKDSQGICFLGKIK+ EF+ H+GE++G I+E ETG LG H G+W
Sbjct: 174 IRQIAQKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+TIGQR+G++L GPW+V EKD++NN++++S + + ++ F V W++ P
Sbjct: 234 FFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSINYLKQGKQQFLVHKTNWIN--KPLN 291
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
L K+RHG C +E +I V L E D G++ GQF FYQ C+G
Sbjct: 292 NGDLSAKIRHGEKKIKCK-----IEMLKNDIIKVDLEEKDYGISPGQFCIFYQEDECLGG 346
Query: 378 GVILES 383
IL++
Sbjct: 347 AKILKT 352
>gi|428169961|gb|EKX38890.1| hypothetical protein GUITHDRAFT_76798 [Guillardia theta CCMP2712]
Length = 431
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 183/371 (49%), Positives = 241/371 (64%), Gaps = 15/371 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+VAVLLSGGVDSSVAL L+ G AFYL+IW +++ + ECPWEED YA +V +
Sbjct: 45 EVAVLLSGGVDSSVALELVRRQGFKPRAFYLRIWLEDELAHL-GECPWEEDWSYASSVAE 103
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ VPLE + L +EYW+ VV Y+I E + GRTPNPD++CN+RIKFG F + + F V
Sbjct: 104 QLKVPLESISLQEEYWEQVVEYLIREAKMGRTPNPDIMCNSRIKFGMFEEYVGK-HFSRV 162
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
ASGHYA H D +PS L +S DKVKDQTYFL +L Q QLK +FP+G +KE+VR
Sbjct: 163 ASGHYAVSCHD--DVGTRPSRLMMSPDKVKDQTYFLCNLRQDQLKHALFPIGGYTKEKVR 220
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A +F+LP + RKDSQGICFLGK+KF +FV H+GE G +++ TG LG+H G WFY
Sbjct: 221 ELAREFNLPTQRRKDSQGICFLGKLKFEDFVGHHLGEDPGPVIDFHTGRELGEHRGLWFY 280
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG- 312
TIGQR+GL GPW+V KD + N+++VS Y + RR F V + W++G
Sbjct: 281 TIGQRKGLGSATRKVTHLGPWFVAGKDRERNMLYVSNQYDVIEGPRRSFDVEQINWMAGS 340
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
LP ++ RL+ K RHGP ++ L + G+ V L D GLA GQ+AA Y G
Sbjct: 341 LPEDDALRLRIKTRHGPNIHDGLLTLSQ----GKLSGRVSLDGRDSGLAPGQWAALYDGE 396
Query: 373 RCIGSGVILES 383
CIG G+I +S
Sbjct: 397 ECIGGGMIADS 407
>gi|203284580|ref|YP_002222320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia duttonii Ly]
gi|229486337|sp|B5RMM8.1|MNMA_BORDL RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|201084023|gb|ACH93614.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia duttonii Ly]
Length = 354
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 167/366 (45%), Positives = 248/366 (67%), Gaps = 15/366 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+A+LLSGGVDSSVAL + G+ + +YLKIW +++ ++ ECPW+ED+ Y +V
Sbjct: 1 MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDEL-SYIGECPWKEDITYVDSV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E+++L +EY+ VV+Y IEE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CKKFNVPYEIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+ +GHYAK+ + + L+ +KDK+KDQ+YFLSHLS+ Q+ +L FPLG + K E
Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
+R+ A + DLPNK+RKDSQGICFLGKIK++EF+ H+GE++G I+E ETG LG H G+W
Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+TIGQR+G++L GPW+V EKD++NN++++S + + + F V W++ P +
Sbjct: 234 FFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWIN--KPLK 291
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
L K+RHG C IE ++D I V L E D G++ GQF FY+ C+G
Sbjct: 292 NDNLSAKIRHGEKKIKCK--IETLKD---EIIRVNLEEKDYGISPGQFCIFYKEDECLGG 346
Query: 378 GVILES 383
IL++
Sbjct: 347 AKILKT 352
>gi|203288114|ref|YP_002223129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia recurrentis A1]
gi|229486333|sp|B5RQ24.1|MNMA_BORRA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|201085334|gb|ACH94908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia recurrentis A1]
Length = 354
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 166/366 (45%), Positives = 249/366 (68%), Gaps = 15/366 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+A+LLSGGVDSSVAL + G+ + +YLKIW +++ ++ ECPW+ED+ Y +V
Sbjct: 1 MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDEL-SYIGECPWKEDITYVDSV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP ++++L +EY+ VV+Y IEE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CKKFNVPYKIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+ +GHYAK+ + + L+ +KDK+KDQ+YFLSHLS+ Q+ +L FPLG + K E
Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
+R+ A + DLPNK+RKDSQGICFLGKIK++EF+ H+GE++G I+E ETG LG H G+W
Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+TIGQR+G++L GPW+V EKD++NN++++S + + + F V W++ P +
Sbjct: 234 FFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWIN--KPLK 291
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ L K+RHG C IE ++D I V L E D G++ GQF FY+ C+G
Sbjct: 292 NNNLSAKIRHGEKKIKCK--IETLKD---EIIRVNLEEKDYGISPGQFCIFYKEDECLGG 346
Query: 378 GVILES 383
IL++
Sbjct: 347 AKILKT 352
>gi|405963639|gb|EKC29197.1| tRNA-specific 2-thiouridylase mnmA [Crassostrea gigas]
Length = 358
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 181/366 (49%), Positives = 234/366 (63%), Gaps = 21/366 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+K+AVLLSGGVDS+VAL+LL GH AFYLK+W +++ +F CPWEED+ YA AVC
Sbjct: 1 MKIAVLLSGGVDSAVALKLLKDQGHQLKAFYLKVWLEDEL-SFLGNCPWEEDLSYATAVC 59
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
D + VPLEVV L +YW+ VVSY+I++ R G TPNPD+LCN+ IKFG F+D +FD+
Sbjct: 60 DALSVPLEVVSLQRDYWQLVVSYVIDQIRKGNTPNPDMLCNSTIKFGRFLDMFGD-QFDF 118
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+ASGHYAK H+ D + L S D VKDQTYFL+ L++AQLK+ +FP+G ++K +V
Sbjct: 119 IASGHYAKTEHADND-----TFLMTSADPVKDQTYFLAALNRAQLKKCLFPIGDMTKAQV 173
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R +A L N RKDSQGICFLGKIKFS+F+ H GE G I++ ETG LG+H G+W+
Sbjct: 174 RDYAHAQKLCNAKRKDSQGICFLGKIKFSDFLKHHFGEKTGDIVQMETGAVLGQHRGYWY 233
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GPWYVV+KDV N V+VS S +K ++ WL E +
Sbjct: 234 FTIGQRRGLGLGSGPWYVVKKDVLGNRVYVSNKIVS--QKVNTIKIDQCNWL--YSKEAL 289
Query: 319 SRL-QCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+L C P L E L D G+A GQFA FY G C+GS
Sbjct: 290 LQLTSCGKPLQPPLAQSLLPKE---------GWCHLLGGDHGVAMGQFAVFYSGKYCLGS 340
Query: 378 GVILES 383
GVI +
Sbjct: 341 GVIAHA 346
>gi|219685499|ref|ZP_03540316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia garinii Far04]
gi|219672898|gb|EED29920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia garinii Far04]
Length = 344
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 238/351 (67%), Gaps = 14/351 (3%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL + + G++ +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSVALYKVINKGYTNIKCYYLKIWLEDEL-SYIGNCPWQEDLNYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYA++ + K L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYARI-----QIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLCFPLGTLFKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIVEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD+K N++++S N + +R F V + W++G+P +
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINGMPS-D 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
+ K+RHG Y+C L + N+ + L++ G G +F
Sbjct: 293 FENFKIKIRHGEKKYSCKLRLI-----TNNLIEICLNKKIMGSLRGNLQSF 338
>gi|386859916|ref|YP_006272622.1| tRNA-specific 2-thiouridylase mnmA [Borrelia crocidurae str.
Achema]
gi|384934797|gb|AFI31470.1| tRNA-specific 2-thiouridylase mnmA [Borrelia crocidurae str.
Achema]
Length = 354
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 167/366 (45%), Positives = 247/366 (67%), Gaps = 15/366 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+A+LLSGGVDSSVAL + G+ + +YLKIW +++ ++ ECPW+ED+ Y +V
Sbjct: 1 MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDEL-SYIGECPWKEDITYVDSV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E+++L +EY+ VV+Y IEE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CKKFNVPYEIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+ +GHYAK+ + + L+ +KDK+KDQ+YFLSHLS+ Q+ +L FPLG + K E
Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
+R+ A DLPNK+RKDSQGICFLGKIK++EF+ H+GE++G I+E ETG LG H G+W
Sbjct: 174 IREIAHDIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+TIGQR+G++L GPW+V +KDV+NN++++S N + + F + W++ P +
Sbjct: 234 FFTIGQRKGIKLSHGPWFVTDKDVQNNIIYISNNINYLKQGKEQFLIHKTNWIN--KPLK 291
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
L K+RHG C IE ++D I V L E D G++ GQF FY+ C+G
Sbjct: 292 NDNLSAKIRHGEKKIKCK--IETLKD---EIIRVNLEEKDYGISPGQFCIFYKEDECLGG 346
Query: 378 GVILES 383
IL++
Sbjct: 347 AKILKT 352
>gi|219126278|ref|XP_002183388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405144|gb|EEC45088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 368
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 170/376 (45%), Positives = 234/376 (62%), Gaps = 22/376 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
VA+LLSGGVDSSVAL LL G+ TAFYLKIW +++ + CPWE+D + + VC+Q
Sbjct: 1 VALLLSGGVDSSVALNLLVQQGYDVTAFYLKIWLEDELAHL-GHCPWEDDYRVCQEVCEQ 59
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+PLE V L + Y V++Y + E GRTPNPD++CN+R+KFG F +AI EFD+VA
Sbjct: 60 AGIPLETVSLQNAYKSRVIAYTVHEAEQGRTPNPDIMCNSRVKFGCFYEAIDQREFDFVA 119
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
SGHYA++V D E L + D +KDQ+YFL L+Q QL+R++FP+G + K +VR
Sbjct: 120 SGHYAQLVK---DTETGSMRLLRAPDPIKDQSYFLCTLTQDQLQRVLFPIGHLQKSQVRD 176
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A +F LPN+ R DSQG+CFLGK+KF EF+A ++G G I++A TGD +G+H G W++T
Sbjct: 177 LADEFILPNRLRPDSQGLCFLGKVKFDEFLAVYLGTRPGPIVDAGTGDVVGQHHGVWYHT 236
Query: 261 IGQRQG-------LRLPGGPWYVVEKDVKNNVVFVSRNYYS--FDKKRRLFRVGSLKWLS 311
+GQR+G L GPWYVV KD +VV+ S Y F R F V ++ W++
Sbjct: 237 VGQRKGIGRVLDPLATSRGPWYVVAKDPGKDVVYCSNQYDEDIFTASRSEFAVENIHWIA 296
Query: 312 GLPPEEI-----SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
G P + R K+RHGP L + + G+ V+L D GLA GQ+
Sbjct: 297 GQAPPNLLKGDGGRFVMKIRHGPDLVKGTLRLTNTAGEGD----VKLDSKDGGLAPGQYV 352
Query: 367 AFYQGTRCIGSGVILE 382
FY+ C+G+GVI E
Sbjct: 353 VFYKDEECLGAGVISE 368
>gi|224010034|ref|XP_002293975.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335]
gi|220970647|gb|EED88984.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335]
Length = 392
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 172/384 (44%), Positives = 245/384 (63%), Gaps = 27/384 (7%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
VA+LLSGGVDSSVA+ LL ++ TAFYL+IW +++ + ECPWE+D++ ++VC+
Sbjct: 13 VAMLLSGGVDSSVAMHLLLRQNYNVTAFYLRIWLEDELSHL-GECPWEDDLQVCQSVCEH 71
Query: 81 V-DVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI--SSMEFD 137
+V LE V L EY + VV Y IEE + GRTPNPD++CN+R+KFG F++ I S M+FD
Sbjct: 72 AGNVSLETVSLGKEYRERVVQYTIEEAQRGRTPNPDIMCNSRVKFGCFLEYIEESGMDFD 131
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
YVASGHYA++ L + D VKDQ+YFL L+Q QL ++IFP+G K E
Sbjct: 132 YVASGHYAQLKDDDDTSSISQKRLFRAPDPVKDQSYFLCALTQKQLSKVIFPIGEYQKSE 191
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ ATQF LPN++R DSQG+CFLGK++F +F+A ++G+ G +++A GD +G+H G W
Sbjct: 192 VRELATQFQLPNRNRPDSQGLCFLGKVRFDDFLASYLGDRPGDVVDALNGDVIGRHNGLW 251
Query: 258 FYTIGQRQG-------LRLPGGPWYVVEKDVKNNVVFVSRNY--YSFDKKRRLFRVGSLK 308
++T+GQR+G L GPWYVV KD + ++V+VS Y F + R F V ++
Sbjct: 252 YHTVGQRKGIGKVMFPLATAKGPWYVVAKDQERDIVYVSNRYDEDDFAQARSEFEVEDVR 311
Query: 309 WLSGLPPEEIS--------RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGL 360
WL+G P RL K+RHGP LM++ +DG ++ ++L + D GL
Sbjct: 312 WLAGEAPMNAHHEKSWHEVRLDMKIRHGPRVVQGTLMLK--DDG--SVGNIRLDQKDGGL 367
Query: 361 AAGQFAAFYQ--GTRCIGSGVILE 382
A GQ+ FYQ C+G+ VI E
Sbjct: 368 APGQYVVFYQPDTLECLGAAVISE 391
>gi|449019849|dbj|BAM83251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cyanidioschyzon merolae strain 10D]
Length = 639
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 181/375 (48%), Positives = 241/375 (64%), Gaps = 19/375 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+VAVLLSGGVDS+VA+ L G FYLKIW +++ N CPWE+D++ A+ VC
Sbjct: 247 EVAVLLSGGVDSAVAMASLLERGFRVQPFYLKIWLEDELANL-GRCPWEDDIRDAEKVCA 305
Query: 80 QV------DVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS 133
+ V LE + L +EYW VV Y I+E R GRTPNPD++CN+RIKFGAF+D++
Sbjct: 306 ALARKYNQRVQLETLSLQEEYWSRVVQYTIDEARRGRTPNPDIMCNSRIKFGAFLDSLGQ 365
Query: 134 MEFDYVASGHYAKVV---HSSADQE-YKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFP 189
+ VASGHYA+VV H+ E + + L S D VKDQTYFLS LSQ QL + FP
Sbjct: 366 -RYALVASGHYARVVTMRHTERGGETHAVAQLFCSPDIVKDQTYFLSQLSQQQLLKATFP 424
Query: 190 LGCISKEEVRKFATQ-FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
+G ++K VR+ A + ++LPN DR DSQGICFLGK+KF +F+ ++G G I+EAE+G
Sbjct: 425 IGDLTKSAVRRLARERYNLPNCDRPDSQGICFLGKLKFEQFLEHYLGTWAGPIMEAESGR 484
Query: 249 FLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLK 308
FLG H GFWFYTIGQR+GL LPGGPWYVV KD++NN+V VSR + R F V ++
Sbjct: 485 FLGTHRGFWFYTIGQRKGLALPGGPWYVVGKDLENNIVLVSRERSQCNVTCRSFIVENVN 544
Query: 309 WLS---GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ EE R + K+RHGP + + H + ++ L E + G+A GQF
Sbjct: 545 WIGWEHSNTNEEPMRCRVKIRHGPRSVSAEV---HCLEPKNQSWIIALDEPESGIAPGQF 601
Query: 366 AAFYQGTRCIGSGVI 380
A FY+ +C+G GVI
Sbjct: 602 AVFYRENQCLGGGVI 616
>gi|452819754|gb|EME26807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Galdieria sulphuraria]
Length = 555
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 158/305 (51%), Positives = 211/305 (69%), Gaps = 10/305 (3%)
Query: 10 SCSMPHQKGL-----KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE 64
SCS HQ ++AVLLSGGVDSSVAL L G+ FYL+IW +++ + +
Sbjct: 223 SCSDSHQYSTDSEKDEIAVLLSGGVDSSVALSRLLEQGYRVKPFYLRIWLEDELSHL-GK 281
Query: 65 CPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKF 124
CPWEED+ YA AVC+ + LE V L EYW+ VV Y I E R GRTPNPDV+CN+RIKF
Sbjct: 282 CPWEEDLVYANAVCEHFGLKLEQVTLQKEYWEQVVEYTISEARAGRTPNPDVMCNSRIKF 341
Query: 125 GAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLK 184
G F+D+I + +ASGHYA++ + ++ L +S D KDQTYFL+HL Q QL
Sbjct: 342 GVFLDSIGKT-YQKIASGHYARIQKEPSTGLFQ---LMVSADAHKDQTYFLAHLLQRQLA 397
Query: 185 RLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEA 244
+++FP+G ++KE+VR A + +L + RKDSQGICFLG+IKF +F+ H+G G ++EA
Sbjct: 398 KVVFPIGHLTKEQVRAIARELNLATQSRKDSQGICFLGQIKFDDFLRHHLGTRPGKLVEA 457
Query: 245 ETGDFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRV 304
ETG +G+H G+WFYT GQR+GLRLP GPWYV+ KDV++N VFVSRNY S +K+R F V
Sbjct: 458 ETGQVVGEHCGYWFYTPGQRKGLRLPNGPWYVLTKDVESNTVFVSRNYDSPEKQRNCFIV 517
Query: 305 GSLKW 309
++ W
Sbjct: 518 ENVHW 522
>gi|397601234|gb|EJK57851.1| hypothetical protein THAOC_22066 [Thalassiosira oceanica]
Length = 646
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 172/388 (44%), Positives = 242/388 (62%), Gaps = 31/388 (7%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
VA+LLSGGVDSSVAL LL G++ TA+YL+IW +++ + ECPWE+D+ + VC+
Sbjct: 246 VAMLLSGGVDSSVALHLLLQQGYNVTAYYLRIWLEDELAHL-GECPWEDDLHVCQEVCEH 304
Query: 81 V-DVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI--SSMEFD 137
+VPLE V L EY VV Y IEE + GRTPNPD++CN+R+KFG F++ I S M+FD
Sbjct: 305 AGNVPLETVSLGKEYRDRVVQYTIEEAQQGRTPNPDIMCNSRVKFGCFLEYIDQSGMKFD 364
Query: 138 YVASGHYAKV---VHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
+VASGHYA++ S+ + L + D VKDQ+YFL L+Q QL +++FP+G
Sbjct: 365 HVASGHYARLEDEPRESSPGTTRAKRLFRAPDPVKDQSYFLCALTQKQLSKVLFPIGQYK 424
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR+ A++F+LPN++R DSQG+CFLGK+KF EF++ ++G G +++A G+ +GKH
Sbjct: 425 KSEVRQLASEFNLPNRNRPDSQGLCFLGKVKFDEFLSSYLGSRPGDVVDAMNGEVIGKHN 484
Query: 255 GFWFYTIGQRQG-------LRLPGGPWYVVEKDVKNNVVFVSRNY--YSFDKKRRLFRVG 305
G W++T+GQR+G L GPWYVV KD +VV+VS Y F K R F V
Sbjct: 485 GLWYHTVGQRKGIGKVMFPLATAHGPWYVVAKDQSKDVVYVSNRYDEDDFAKARSEFEVE 544
Query: 306 SLKWLSGLPPE---------EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSED 356
++W+S P E+ R K+RHGP +L ++ G + V+L
Sbjct: 545 DVRWISNQHPAQAMSSDGKWEVVRFDMKIRHGPKIVQGSLQLK----GDGSSGNVKLDLK 600
Query: 357 DQGLAAGQFAAFYQGT--RCIGSGVILE 382
D GLA GQ+ FY T +G+GVI E
Sbjct: 601 DGGLAPGQYVVFYSQTSDEVLGAGVISE 628
>gi|414865091|tpg|DAA43648.1| TPA: hypothetical protein ZEAMMB73_761275 [Zea mays]
Length = 226
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 153/222 (68%), Positives = 176/222 (79%), Gaps = 6/222 (2%)
Query: 207 LPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQRQG 266
LPN+ RKDSQGICFLGK+KFSEFV RHIGE EG+ILEAE+GD+LG H GFWFYTIGQRQG
Sbjct: 3 LPNQGRKDSQGICFLGKVKFSEFVERHIGEKEGIILEAESGDYLGIHRGFWFYTIGQRQG 62
Query: 267 LRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVR 326
LRLPGGPWYVVEKDV+NNVVFVSRNYYS DK+RR FRVGSL W P +L+CKVR
Sbjct: 63 LRLPGGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDNCGPGNNEQLKCKVR 122
Query: 327 HGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWDD 386
H P F++C L+ E E+ G+ + VV L+EDDQGLAAGQFAAFY C+GSG+IL+SWD
Sbjct: 123 HSPEFHDCTLVKERSEENGDAL-VVHLAEDDQGLAAGQFAAFYSENVCLGSGIILDSWDK 181
Query: 387 QGFPVCEKALEIARMEDKSKLGKPIKIK-----VKPETPEEF 423
FPVC +ALEIA++ DKS LGKPI+I VKPE EE
Sbjct: 182 MSFPVCSRALEIAKLADKSSLGKPIRIVNLEHIVKPEQQEEI 223
>gi|189462149|ref|ZP_03010934.1| hypothetical protein BACCOP_02831 [Bacteroides coprocola DSM 17136]
gi|189431122|gb|EDV00107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides coprocola DSM 17136]
Length = 378
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 225/366 (61%), Gaps = 19/366 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A L+SGGVDS+VA+ LL G+ FY+KI D E C EED++ A A
Sbjct: 26 MNIAALISGGVDSAVAVHLLCEQGYKPDLFYIKIGMDTDNE---LSCTAEEDIELATATA 82
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LE++ L EYW VV+Y IE+ R G TPNPDV+CN IKFG F + + +D
Sbjct: 83 RRYGLQLEIIDLQKEYWDQVVAYTIEKVRNGFTPNPDVMCNKLIKFGCF-EQKAGYAYDK 141
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA + + L +KD +KDQT FL+ ++ Q+ +L+FPLG K+E+
Sbjct: 142 IATGHYASTCELNG-----KTWLATAKDAIKDQTDFLAQINYLQVSKLLFPLGGYMKKEI 196
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q LP+ RKDSQGICFLGKI +++F+ R +GE +G I+E E+G +GKH GFWF
Sbjct: 197 RHIAAQAKLPSAQRKDSQGICFLGKINYNDFIRRFLGERQGSIIELESGKEIGKHRGFWF 256
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP--PE 316
+TIGQR+GL L GGPW+VV+KD +NN+++VS Y + + F++ +++ P E
Sbjct: 257 HTIGQRKGLGLSGGPWFVVDKDTENNILYVSHGYDTEQQYSNEFKLTDFHFITDNPWLTE 316
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+ ++ KVRH GF+ NL++++ I ++ SE QG+A GQF Y C
Sbjct: 317 KEQQVCFKVRHTDGFHQGNLILKN------GICHIRSSEKIQGIAPGQFGVIYDKDAHLC 370
Query: 375 IGSGVI 380
IGSG I
Sbjct: 371 IGSGEI 376
>gi|402847450|ref|ZP_10895736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas sp. oral taxon 279 str. F0450]
gi|402266393|gb|EJU15828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas sp. oral taxon 279 str. F0450]
Length = 390
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/382 (41%), Positives = 228/382 (59%), Gaps = 31/382 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++AVL+SGGVDSSV + LL AG+ T FY++I +E +T+C WE+D++ + +
Sbjct: 23 RIAVLVSGGVDSSVVVHLLTEAGYRPTLFYIQIGMEE---KGFTDCSWEDDLEIVRHLAH 79
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ D PLEVV L DEYW NVV Y I+ R G TPNPD++CN IKFG F + +FD++
Sbjct: 80 RYDCPLEVVSLHDEYWANVVQYTIDTVRRGLTPNPDMMCNKLIKFGCFEEKWGK-DFDFI 138
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA DQ Y L + D VKDQT FL+ ++ Q+ +L+FP G + K EVR
Sbjct: 139 ATGHYATTTFV-GDQLY----LATAPDPVKDQTDFLAQINFRQVSKLLFPTGHLLKSEVR 193
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L + +RKDSQGICFLGK+ ++EF+ R +G+ EG+I+E ETG LGKH G+WF+
Sbjct: 194 RIAEEAHLLSANRKDSQGICFLGKVNYNEFIERALGQKEGLIIERETGKILGKHKGYWFH 253
Query: 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP----- 314
TIGQR+GL L GGPW+VV+K+++ N++ VS+ Y D+ + + ++S P
Sbjct: 254 TIGQRKGLGLSGGPWFVVKKNIRRNIILVSQGYDPADQYGEHIGMETCDFISHDPWQYAA 313
Query: 315 ----------PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQ 364
EE + KVRH P F L + +++ E QG+A GQ
Sbjct: 314 EVQGLDAPLSREESVEITFKVRHTPDFTRGRLSYDPASG-----YLIESEEPIQGIAPGQ 368
Query: 365 FAAFYQGTR--CIGSGVILESW 384
+A Y C GSG+I +
Sbjct: 369 YAVLYDTEHRICFGSGMITRGF 390
>gi|423217826|ref|ZP_17204322.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides caccae
CL03T12C61]
gi|392627329|gb|EIY21364.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides caccae
CL03T12C61]
Length = 354
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/367 (43%), Positives = 221/367 (60%), Gaps = 19/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y I++ + G TPNPDV+CN IKFG F I +FDY
Sbjct: 58 RKYGLSLEVVDLHREYWDNVAAYAIDKIKKGLTPNPDVMCNKLIKFGCFEQRIGK-DFDY 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + Q + L +KD VKDQT FL+ + Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTL-----QRNGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A DLP+ RKDSQGICFLGKI +++FV R +GE EG+I+E ETG LG H G+WF
Sbjct: 172 REIALNADLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGMIIELETGKKLGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD++ N+++VSR Y + R+ +++ P +
Sbjct: 232 HTIGQRKGLGLSGGPWFVIKKDIQENIIYVSRGYGVKTQYGNELRINDFHFITDNPWQSA 291
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ--GTR 373
+ + K+RH P F L+ E GE + SE+ QG+A GQF Y
Sbjct: 292 GKEIDITFKIRHTPEFTKGKLVQE-----GERQFRILSSENLQGIAPGQFGVVYDEAAQV 346
Query: 374 CIGSGVI 380
C+GSG I
Sbjct: 347 CVGSGEI 353
>gi|333383101|ref|ZP_08474763.1| tRNA-specific 2-thiouridylase mnmA [Dysgonomonas gadei ATCC
BAA-286]
gi|332827933|gb|EGK00655.1| tRNA-specific 2-thiouridylase mnmA [Dysgonomonas gadei ATCC
BAA-286]
Length = 358
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 159/370 (42%), Positives = 226/370 (61%), Gaps = 25/370 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+K+A L+SGGVDSSV + L G+ T FY++I ++ E + +CP EED++ +
Sbjct: 1 MKIAALVSGGVDSSVVVHQLKEQGYDPTIFYIRIGMED--EQGYIDCPAEEDIEITTYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ +EVV L +EYW+NVVSY ++ + G TPNPD++CN IKFG F + EFD
Sbjct: 59 KKYGCKMEVVSLHEEYWENVVSYTVDAVKRGLTPNPDMMCNKMIKFGCF-EQKWGHEFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA + + L +KD VKDQTYFL + Q+ +L+FP+G + K EV
Sbjct: 118 IATGHYATTTELNG-----KTWLSTAKDHVKDQTYFLGQIDYLQVSKLMFPIGDLLKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q LP+ RKDSQGICFLGK+ +++F+ R++GE +G I+E ETG+ LGKH G+WF
Sbjct: 173 RAIAAQQGLPSAQRKDSQGICFLGKVNYNDFIRRYLGERKGKIVELETGNVLGKHDGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP--- 315
+TIGQR+GL+L GGPW+V++KD K NVV+VS Y D + + +V +L S +
Sbjct: 233 HTIGQRRGLKLSGGPWFVIKKDTKRNVVYVSNGY---DPETQYGKVVNLAGFSFITEDIW 289
Query: 316 ---EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
E + K+RH P F + IE + D + + E QG+AAGQF Y
Sbjct: 290 GDFEGRKDITFKIRHTPEF--THGYIEKIGD----LYRIHSDEKIQGIAAGQFGVVYDAD 343
Query: 373 R--CIGSGVI 380
CIGSG+I
Sbjct: 344 SKLCIGSGMI 353
>gi|160883313|ref|ZP_02064316.1| hypothetical protein BACOVA_01282 [Bacteroides ovatus ATCC 8483]
gi|156111297|gb|EDO13042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides ovatus ATCC 8483]
Length = 355
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 159/368 (43%), Positives = 223/368 (60%), Gaps = 19/368 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ R G TPNPDV+CN IKFG F + +FD+
Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 117 TATGHYATTLQRNG-----KTWLGTAKDLVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG LG H G+WF
Sbjct: 172 REIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAIIELETGKKLGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+VV+KD++ N ++VSR Y + FR+ +++ P
Sbjct: 232 HTIGQRKGLGLSGGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
E+ + K+RH P F L+ E GE + SE QG+A GQF Y +
Sbjct: 292 EKEIDITFKIRHTPDFTKGKLIQE-----GEKQFYILSSEKLQGIAPGQFGVIYDEEAKV 346
Query: 374 CIGSGVIL 381
C+GSG I+
Sbjct: 347 CVGSGEII 354
>gi|293369466|ref|ZP_06616049.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides ovatus SD CMC 3f]
gi|336415998|ref|ZP_08596336.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus 3_8_47FAA]
gi|423287803|ref|ZP_17266654.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus
CL02T12C04]
gi|292635464|gb|EFF53973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides ovatus SD CMC 3f]
gi|335939901|gb|EGN01773.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus 3_8_47FAA]
gi|392671818|gb|EIY65289.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus
CL02T12C04]
Length = 355
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 160/368 (43%), Positives = 223/368 (60%), Gaps = 19/368 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ R G TPNPDV+CN IKFG F + +FD+
Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + Q + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 117 TATGHYATTL-----QRNGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG LG H G+WF
Sbjct: 172 REIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAIIELETGKKLGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+VV+KD++ N ++VSR Y + FR+ +++ P
Sbjct: 232 HTIGQRKGLGLSGGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
E+ + K+RH P F L+ E GE + SE QG+A GQF Y +
Sbjct: 292 EKEIDITFKIRHTPDFTKGKLIQE-----GEKQFHILSSEKLQGIAPGQFGVIYDEEAKV 346
Query: 374 CIGSGVIL 381
C+GSG I+
Sbjct: 347 CVGSGEII 354
>gi|153807884|ref|ZP_01960552.1| hypothetical protein BACCAC_02170 [Bacteroides caccae ATCC 43185]
gi|149129493|gb|EDM20707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides caccae ATCC 43185]
Length = 354
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 159/367 (43%), Positives = 220/367 (59%), Gaps = 19/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y I++ + G TPNPDV+CN IKFG F I +FDY
Sbjct: 58 RKYGLSLEVVDLHREYWDNVAAYAIDKIKKGLTPNPDVMCNKLIKFGCFEQRIGK-DFDY 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + Q + L +KD VKDQT FL+ + Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTL-----QRNGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A DLP+ RKDSQGICFLGKI +++FV R +GE EG+I+E ETG LG H G+WF
Sbjct: 172 REIALNADLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGMIIELETGKKLGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD++ N+++VSR Y + R+ +++ P +
Sbjct: 232 HTIGQRKGLGLSGGPWFVIKKDIQENIIYVSRGYGVKTQYGNELRINDFHFITDNPWQSA 291
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ--GTR 373
+ + K+RH P F L+ E GE + SE QG+A GQF Y
Sbjct: 292 GKEIDITFKIRHTPEFTKGKLVQE-----GERQFRILSSEKLQGIAPGQFGVVYDEAAQV 346
Query: 374 CIGSGVI 380
C+GSG I
Sbjct: 347 CVGSGEI 353
>gi|262407475|ref|ZP_06084023.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
gi|294646866|ref|ZP_06724487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides ovatus SD CC 2a]
gi|294808901|ref|ZP_06767630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides xylanisolvens SD CC 1b]
gi|345512048|ref|ZP_08791587.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. D1]
gi|229443508|gb|EEO49299.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. D1]
gi|262354283|gb|EEZ03375.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
gi|292637811|gb|EFF56208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides ovatus SD CC 2a]
gi|294443943|gb|EFG12681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides xylanisolvens SD CC 1b]
Length = 355
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 159/368 (43%), Positives = 224/368 (60%), Gaps = 19/368 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A
Sbjct: 1 MEIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ R G TPNPDV+CN IKFG F + +FD+
Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD VKDQT FL+ + Q+ +LIFP+G + K+EV
Sbjct: 117 TATGHYATTLQRDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLIFPIGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG +G H G+WF
Sbjct: 172 REIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEKEGAIVELETGKKVGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+VV+KD++ N ++VSR Y + FR+ +++ P
Sbjct: 232 HTIGQRKGLGLSGGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
E+ + K+RH P F L+ E GE + + SE QG+A GQF Y +
Sbjct: 292 EKEVDIIFKIRHTPEFTKGKLIQE-----GEKLFHILSSEKLQGIAPGQFGVIYDEEVKV 346
Query: 374 CIGSGVIL 381
C+GSG I+
Sbjct: 347 CVGSGEII 354
>gi|237722379|ref|ZP_04552860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 2_2_4]
gi|299146396|ref|ZP_07039464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 3_1_23]
gi|229448189|gb|EEO53980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 2_2_4]
gi|298516887|gb|EFI40768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 3_1_23]
Length = 355
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/368 (43%), Positives = 223/368 (60%), Gaps = 19/368 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ R G TPNPDV+CN IKFG F + +FD+
Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + Q + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 117 TATGHYATTL-----QRNGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG LG H G+WF
Sbjct: 172 REIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAIIELETGKKLGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+VV+KD++ N ++VSR Y + FR+ +++ P
Sbjct: 232 HTIGQRKGLGLSGGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
E+ + K+RH P F L+ E GE + SE QG+A GQF Y +
Sbjct: 292 EKEIDITFKIRHTPDFTKGKLIQE-----GEKQFHILSSEKLQGIAPGQFGVIYDEETKV 346
Query: 374 CIGSGVIL 381
C+GSG I+
Sbjct: 347 CVGSGEIV 354
>gi|228470778|ref|ZP_04055626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas uenonis 60-3]
gi|228307451|gb|EEK16456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas uenonis 60-3]
Length = 376
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/381 (41%), Positives = 229/381 (60%), Gaps = 22/381 (5%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
L ++P ++A+L SGGVDSSVA+ LL AG +Y++I Q++ +F +CP E
Sbjct: 5 LYTALPRDS--RIALLASGGVDSSVAMHLLVEAGFRPDLYYIRIGMQDEDGSF-LDCPAE 61
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED++ + + D+ LE+V L YW VV+Y ++ R G TPNPDV+CN IKFGAF
Sbjct: 62 EDIELVTLLARRYDLHLEIVDLHQVYWDRVVAYTMDAVRRGLTPNPDVMCNKLIKFGAFE 121
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
+ + +DY+A+GHYA + + E + L S D VKDQT FL+ + Q++RL+F
Sbjct: 122 ERCGA-SYDYIATGHYATIRQT----EDGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLF 176
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G + KEEVR+ A + L N RKDSQGICFLG+I +++F+ R++G G I++ ETG+
Sbjct: 177 PIGHLPKEEVRRIALEAHLVNAQRKDSQGICFLGQIDYNDFIERYLGTQTGDIIDHETGE 236
Query: 249 FLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLK 308
+G+H G+WF+TIGQR+GL L GGPWYVV KDV++NV++ SR Y + + +
Sbjct: 237 KIGEHRGYWFHTIGQRKGLGLSGGPWYVVAKDVEHNVLYASRGYDPKTQYGTIIETEEMH 296
Query: 309 WLSG-------LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
WL+ P + + K+RH P F L EH+ GG + S QG+A
Sbjct: 297 WLTTDPWLWTKTPSDSPLEVTFKIRHTPDFTAGRL--EHLPSGGYQLVS---SVPIQGIA 351
Query: 362 AGQFAAFYQGTR--CIGSGVI 380
AGQFA Y R C GS I
Sbjct: 352 AGQFATIYDPQRQLCWGSAPI 372
>gi|423212976|ref|ZP_17199505.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides xylanisolvens
CL03T12C04]
gi|392694232|gb|EIY87460.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides xylanisolvens
CL03T12C04]
Length = 355
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 158/368 (42%), Positives = 223/368 (60%), Gaps = 19/368 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A
Sbjct: 1 MEIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ R G TPNPDV+CN IKFG F + +FD+
Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 117 TATGHYATTLQCDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG +G H G+WF
Sbjct: 172 REIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEKEGAIVELETGKKVGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+VV+KD++ N ++VSR Y + FR+ +++ P
Sbjct: 232 HTIGQRKGLGLSGGPWFVVKKDIEENTIYVSRGYGVETQYGHEFRMHDFHFITDNPWKGQ 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
E+ + K+RH P F L+ E GE + SE QG+A GQF Y +
Sbjct: 292 EKEVDITFKIRHTPEFTKGKLIQE-----GEKQFHILSSEKLQGIAPGQFGVIYDEEAKV 346
Query: 374 CIGSGVIL 381
C+GSG I+
Sbjct: 347 CVGSGEII 354
>gi|380694670|ref|ZP_09859529.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides faecis MAJ27]
Length = 355
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/368 (42%), Positives = 224/368 (60%), Gaps = 19/368 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 1 MNIAALLSGGVDSSVVVHLLCEQGYRPTLFYIKIGMDG---AEYMDCSAEEDIEMSAAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ R G TPNPDV+CN IKFG F + +FD+
Sbjct: 58 RKYGLSLEVVDLHKEYWENVAAYAIDKIRKGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA V Q + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 117 TATGHYATTV-----QRDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPVGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG +G H G+WF
Sbjct: 172 REIARNTGLPSARRKDSQGICFLGKINYNDFVRRFLGEQEGAIIELETGKRVGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KDV+ N+++VS Y + FR+ +++ P ++
Sbjct: 232 HTIGQRKGLGLSGGPWFVIKKDVQENIIYVSHGYGVETQFGHEFRINDFHFITDNPWKDA 291
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
+ + K+RH P F L+ E G ++ SE QG+A GQF Y +
Sbjct: 292 GKEVDITFKIRHTPEFTRGRLIQEE----GNRFRILS-SEKLQGIAPGQFGVVYDQEAGV 346
Query: 374 CIGSGVIL 381
C+GSG I+
Sbjct: 347 CVGSGEIV 354
>gi|336404853|ref|ZP_08585541.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_30]
gi|335940674|gb|EGN02540.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_30]
Length = 355
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 158/368 (42%), Positives = 223/368 (60%), Gaps = 19/368 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A
Sbjct: 1 MEIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ R G TPNPDV+CN IKFG F + +FD+
Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 117 TATGHYATTLQRDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG +G H G+WF
Sbjct: 172 REIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEKEGAIVELETGKKVGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+VV+KD++ N ++VSR Y + FR+ +++ P
Sbjct: 232 HTIGQRKGLGLSGGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
E+ + K+RH P F L+ E GE + SE QG+A GQF Y +
Sbjct: 292 EKEVDITFKIRHTPEFTKGKLIQE-----GEKQFHILSSEKLQGIAPGQFGVIYDEEVKV 346
Query: 374 CIGSGVIL 381
C+GSG I+
Sbjct: 347 CVGSGEII 354
>gi|332299754|ref|YP_004441675.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas asaccharolytica DSM 20707]
gi|332176817|gb|AEE12507.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas asaccharolytica DSM 20707]
Length = 379
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 229/381 (60%), Gaps = 22/381 (5%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
L ++P ++A+L SGGVDSSVA+ LL AG +Y++I Q++ + + +CP E
Sbjct: 8 LYTALPRDS--RIALLASGGVDSSVAMHLLVEAGFRPDLYYIRIGMQDE-DGGYLDCPAE 64
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED++ + + D+ LEV+ L YW VV+Y ++ R G TPNPDV+CN IKFGAF
Sbjct: 65 EDIELVTLLARRYDLHLEVIDLHKLYWDRVVAYTMDAVRRGLTPNPDVMCNKLIKFGAFE 124
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
+ S +DY+A+GHYA + ++ + L S D VKDQT FL+ + Q++RL+F
Sbjct: 125 ER-SGSSYDYIATGHYATIRKTAEGLTF----LGTSPDPVKDQTDFLAQIGFRQMERLLF 179
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G + KEEVR+ A + L N RKDSQGICFLG+I +++F+ R++G G I++ ETG+
Sbjct: 180 PIGHLPKEEVRRIALEAHLVNAQRKDSQGICFLGQINYNDFIERYLGTQTGDIIDHETGE 239
Query: 249 FLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLK 308
+G+H G+WF+TIGQR+GL L GGPWYVV KDV++NV++ SR Y + + +
Sbjct: 240 KIGEHRGYWFHTIGQRKGLGLSGGPWYVVAKDVEHNVLYASRGYDPKTQYGTIIETEEMH 299
Query: 309 WL-------SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
WL + P + + K+RH P F L E + GG + SE QG+A
Sbjct: 300 WLTVDPWLWTETPSDSPLEVTFKIRHTPDFTAGRL--ERLPSGGYQLVS---SEPIQGIA 354
Query: 362 AGQFAAFY--QGTRCIGSGVI 380
AGQFA Y Q C GS I
Sbjct: 355 AGQFATIYDPQHQLCWGSAPI 375
>gi|298483766|ref|ZP_07001939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. D22]
gi|295087550|emb|CBK69073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides xylanisolvens XB1A]
gi|298270060|gb|EFI11648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. D22]
Length = 355
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 158/368 (42%), Positives = 223/368 (60%), Gaps = 19/368 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A
Sbjct: 1 MEIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ R G TPNPDV+CN IKFG F + +FD+
Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 117 TATGHYATTLQCDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG +G H G+WF
Sbjct: 172 REIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEKEGAIVELETGKKVGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+VV+KD++ N ++VSR Y + FR+ +++ P
Sbjct: 232 HTIGQRKGLGLSGGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
E+ + K+RH P F L+ E GE + SE QG+A GQF Y +
Sbjct: 292 EKEVDITFKIRHTPEFTKGKLIQE-----GEKQFHILSSEKLQGIAPGQFGVIYDEEVKV 346
Query: 374 CIGSGVIL 381
C+GSG I+
Sbjct: 347 CVGSGEII 354
>gi|429327447|gb|AFZ79207.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase,
putative [Babesia equi]
Length = 699
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 158/413 (38%), Positives = 231/413 (55%), Gaps = 52/413 (12%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KVA+L+SGGVDSSVAL LL + G+ AFYLK+W D + C W D++YA VC
Sbjct: 288 KVALLISGGVDSSVALWLLKNRGYHVEAFYLKVW---DLLDTQETCSWATDIQYAMDVCK 344
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+DV L ++ D Y+ N++ +++++ R G TPNPDV CN RIKFG F+ EFDYV
Sbjct: 345 MLDVKLHIIPFKDLYYSNIIQHLVKDSREGETPNPDVECNNRIKFGEFLKFAIDWEFDYV 404
Query: 140 ASGHYAKVV-------HSSADQEYKPSVLE-------------------LSKDKVKDQTY 173
ASGHYA++ H D P +L+ LS+D KDQTY
Sbjct: 405 ASGHYARIKNDIVSKDHPEIDLMGSPEILDILEGCKYDSRGFYNIRRLCLSRDINKDQTY 464
Query: 174 FLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARH 233
FLS L Q+QL +LIFP+G K++VR A LP +DRKDS G+CFLG + S F+ R
Sbjct: 465 FLSRLKQSQLSKLIFPIGDFEKKKVRDIANTVMLPTRDRKDSVGLCFLGNVHLSSFLTRQ 524
Query: 234 IGEMEGVILEAETGDFLGKHWGFWFYTIGQRQGLR---LPGGP---WYVVEKDVKNNVVF 287
IGE +G I++ ++ +G+H G + YTIGQ++ + G P +VV+KDV+ N ++
Sbjct: 525 IGESKGPIIDNDSMKIIGEHSGLYNYTIGQKERINQCIFKGNPEVVRHVVKKDVETNTLY 584
Query: 288 VSRNYYS-----FDKKRRLFRVGSLKWLSGLPPEEISRLQC------------KVRHGPG 330
V+ +Y S D R +F V ++W+ ++R+ C K+RH P
Sbjct: 585 VTSSYNSPKYLKPDGIRSIFHVNDIRWIVPDFRGILNRVACNDAGGLVHKLNVKLRHSPN 644
Query: 331 FYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 383
F C + + N A ++L+ D G++ GQ+AAFY +CIG+ ++ +
Sbjct: 645 FRACLANFDQSSNLRLNSAFIKLNTADSGISTGQYAAFYVNDQCIGASKMITA 697
>gi|373500509|ref|ZP_09590890.1| tRNA methyl transferase [Prevotella micans F0438]
gi|371953443|gb|EHO71268.1| tRNA methyl transferase [Prevotella micans F0438]
Length = 360
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 159/363 (43%), Positives = 217/363 (59%), Gaps = 16/363 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++A+LLSGGVDSSVAL LL G + FY+KI +ED W +C EED++ A V
Sbjct: 10 RIALLLSGGVDSSVALYLLAEKGFTPDCFYIKIGPEED--EAW-DCNSEEDLEMASVVAS 66
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ LEVV EYW V Y +++ R G TPNPDV+CN IKFGAF D ++D +
Sbjct: 67 RYGCKLEVVDCHKEYWDEVTGYTMKKVRSGFTPNPDVMCNRLIKFGAF-DRKCGHKYDII 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ + + L S D VKDQT FL+ + QL++ IFP+G + K EVR
Sbjct: 126 ATGHYAQTKWINGRK-----WLCTSPDPVKDQTDFLAQIYSWQLQKAIFPIGHLEKHEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L N RKDSQGICFLG I ++E++ R++GE G ++E ETG +G+H G WF+
Sbjct: 181 SIAEREHLINARRKDSQGICFLGNIDYNEYLRRYLGEQLGNVIELETGRIIGQHRGHWFH 240
Query: 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEIS 319
TIGQR+GL L GGPW+VV+KD N++FVS Y + LFR+ L WL+ P +
Sbjct: 241 TIGQRKGLGLGGGPWFVVKKDTAENILFVSHGYDPATAYKNLFRIHDLHWLTITPETHTT 300
Query: 320 RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRCIGS 377
+ K+RH P F+ +L I+ E A++ ++ G+A GQF Y Q RC GS
Sbjct: 301 PITFKIRHTPEFHRAHLEIQ-----AEGTALIYSDDNIHGVAPGQFCVIYDEQHNRCYGS 355
Query: 378 GVI 380
I
Sbjct: 356 AEI 358
>gi|255692219|ref|ZP_05415894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides finegoldii DSM 17565]
gi|260622083|gb|EEX44954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides finegoldii DSM 17565]
Length = 355
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 163/370 (44%), Positives = 223/370 (60%), Gaps = 23/370 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI E E + +C EED++ + A
Sbjct: 1 MNIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGM-EGAE--YMDCSAEEDIELSAATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LE+V EYW+NV +Y I + R G TPNPDV+CN IKFG F I EFD+
Sbjct: 58 RKYGLSLEIVDFHKEYWENVATYAIGKIRQGLTPNPDVMCNKLIKFGCFEQRIGK-EFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + Q L +KD VKDQT FL+ + Q+ +L+FP+G ++K EV
Sbjct: 117 TATGHYATTI-----QRDGKVWLGTAKDPVKDQTDFLAQIDYLQISKLMFPIGGLTKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A LP+ RKDSQGICFLGKI +++FV R +GE EGVI+E ETG LG H G+WF
Sbjct: 172 REIADAAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEREGVIVELETGKKLGTHHGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGL 313
+TIGQR+GL L GGPW+VV+KD++ N+++VSR Y Y + + R F + G
Sbjct: 232 HTIGQRKGLGLSGGPWFVVKKDIQENIIYVSRGYGVETQYGNEFQMRDFHFITDNIWKGQ 291
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QG 371
E + K+RH P F L+++ G+N + SE QG+A GQF Y +
Sbjct: 292 DKE--VDITFKIRHTPEFTKGKLIMK-----GDNQFHILSSEKLQGIAPGQFGVIYDKEA 344
Query: 372 TRCIGSGVIL 381
C+GSG I+
Sbjct: 345 RICVGSGEII 354
>gi|383115026|ref|ZP_09935785.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. D2]
gi|423295693|ref|ZP_17273820.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus
CL03T12C18]
gi|313693264|gb|EFS30099.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. D2]
gi|392671421|gb|EIY64893.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus
CL03T12C18]
Length = 355
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 158/368 (42%), Positives = 222/368 (60%), Gaps = 19/368 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ R G TPNPDV+CN IKFG F + +FD+
Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFGCFEQRVGK-DFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 117 TATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ET LG H G+WF
Sbjct: 172 REIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAIIELETEKKLGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+VV+KD++ N ++VSR Y + FR+ +++ P
Sbjct: 232 HTIGQRKGLGLSGGPWFVVKKDMEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
E+ + K+RH P F L+ E GE + SE QG+A GQF Y +
Sbjct: 292 EKEIDITFKIRHTPDFTKGKLIQE-----GEKQFHILSSEKLQGIAPGQFGVIYDEEAKV 346
Query: 374 CIGSGVIL 381
C+GSG I+
Sbjct: 347 CVGSGEII 354
>gi|224540371|ref|ZP_03680910.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518022|gb|EEF87127.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus
DSM 14838]
Length = 353
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 227/367 (61%), Gaps = 21/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ ++VLLSGGVDSSV + LL G+ + FY+KI + +C EED + A A+
Sbjct: 1 MNISVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIGMDG---TDYMDCSAEEDWEMATAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ +PLE+V L EYW+ V +Y I++ R G TPNPDV+CN IKFG F + EFD+
Sbjct: 58 HRYGLPLEMVDLQKEYWEQVAAYAIDKIRRGLTPNPDVMCNRFIKFGCFEQKVGK-EFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA VH L ++ D VKDQT FL+ + Q+ +L+FPLG + K+EV
Sbjct: 117 IATGHYATTVHKDG-----KVWLGIAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP R+DSQGICFLGKI +++FV R +GE +G I+E ETG +G H G+WF
Sbjct: 172 RDIARNAGLPTARRRDSQGICFLGKINYNDFVRRFLGERQGDIIELETGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+V+ KDV+ NV++VSR Y + + R F++ +++ P
Sbjct: 232 HTIGQRKGLGLSGGPWFVIRKDVEANVLYVSRGYDTQWQYGREFKIHDFHFITENPWLHN 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY-QGTR- 373
+E+ + K+RH P F L+ E GE +V SE+ QG+A GQF Y + +R
Sbjct: 292 QEVD-VTFKIRHTPEFMKGKLIRE-----GEIYRIVS-SENLQGIAPGQFGVVYDEASRI 344
Query: 374 CIGSGVI 380
CIGSG I
Sbjct: 345 CIGSGEI 351
>gi|60680859|ref|YP_211003.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343]
gi|265762789|ref|ZP_06091357.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
gi|336409004|ref|ZP_08589493.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 2_1_56FAA]
gi|383117564|ref|ZP_09938308.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_2_5]
gi|423268691|ref|ZP_17247663.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL05T00C42]
gi|423273750|ref|ZP_17252697.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL05T12C13]
gi|423284748|ref|ZP_17263631.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 615]
gi|81316073|sp|Q5LFN5.1|MNMA2_BACFN RecName: Full=tRNA-specific 2-thiouridylase MnmA 2
gi|60492293|emb|CAH07058.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis NCTC 9343]
gi|251947101|gb|EES87383.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_2_5]
gi|263255397|gb|EEZ26743.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
gi|335934151|gb|EGM96149.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 2_1_56FAA]
gi|392702000|gb|EIY95146.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL05T00C42]
gi|392707183|gb|EIZ00302.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL05T12C13]
gi|404579939|gb|EKA84652.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 615]
Length = 353
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 158/367 (43%), Positives = 222/367 (60%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y IE+ R G+TPNPDV+CN IKFG F + +FD
Sbjct: 58 RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCFEQQVGK-DFDL 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD +KDQT FL+ + Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q LP+ RKDSQGICFLGKI +++FV R +GE EG ++E ETG +G H G+WF
Sbjct: 172 REIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV+KD+++N+++VS Y + + FR+ +++ P E
Sbjct: 232 HTIGQRKGLGLGGGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F L+ H E+G I+ SE QG+A GQF Y
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLL--HDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRV 345
Query: 374 CIGSGVI 380
C GSG I
Sbjct: 346 CFGSGEI 352
>gi|29345565|ref|NP_809068.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron
VPI-5482]
gi|81587200|sp|Q8ABF5.1|MNMA1_BACTN RecName: Full=tRNA-specific 2-thiouridylase MnmA 1
gi|29337457|gb|AAO75262.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides thetaiotaomicron VPI-5482]
Length = 355
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 225/367 (61%), Gaps = 19/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 1 MNIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIEMSTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ + G TPNPDV+CN IKFG F + FD+
Sbjct: 58 RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFGCFEQQVGK-NFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 117 TATGHYATTIRQDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A++ LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG +G H G+WF
Sbjct: 172 REIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEREGAIIELETGKKVGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KDV+ N+++VS Y + FR+ +++ P ++
Sbjct: 232 HTIGQRKGLGLSGGPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENPWKDA 291
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
+ + K+RH P F L+ E+GG+ + SE QG+A GQF Y +
Sbjct: 292 GKEIDITFKIRHTPEFTKGKLV---QEEGGQ--FRILSSEKLQGIAPGQFGVIYDEEAGI 346
Query: 374 CIGSGVI 380
C+GSG I
Sbjct: 347 CVGSGEI 353
>gi|313887221|ref|ZP_07820916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas asaccharolytica PR426713P-I]
gi|312923312|gb|EFR34126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas asaccharolytica PR426713P-I]
Length = 376
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 229/381 (60%), Gaps = 22/381 (5%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
L ++P ++A+L SGGVDSSVA+ LL AG +Y++I Q++ + + +CP E
Sbjct: 5 LYTALPRDS--RIALLASGGVDSSVAMHLLVEAGFRPDLYYIRIGMQDE-DGGYLDCPAE 61
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED++ + + D+ LEV+ L YW VV+Y ++ + G TPNPDV+CN IKFGAF
Sbjct: 62 EDIELVTLLARRYDLHLEVIDLHKLYWDRVVTYTMDAVKRGLTPNPDVMCNKLIKFGAFE 121
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
+ S +DY+A+GHYA + ++ + L S D VKDQT FL+ + Q++RL+F
Sbjct: 122 ERCGS-SYDYIATGHYATIRKTAEGLTF----LGTSPDPVKDQTDFLAQIGFRQMERLLF 176
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G + KEEVR+ A + L N RKDSQGICFLG+I +++F+ R++G G I++ ETG+
Sbjct: 177 PIGHLPKEEVRRIALEAHLVNAQRKDSQGICFLGQINYNDFIERYLGTQTGDIIDHETGE 236
Query: 249 FLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLK 308
+G+H G+WF+TIGQR+GL L GGPWYVV KDV++NV++ SR Y + + +
Sbjct: 237 KIGEHRGYWFHTIGQRKGLGLSGGPWYVVAKDVEHNVLYASRGYDPKTQYGTIIETEEMH 296
Query: 309 WL-------SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
WL + P + + K+RH P F L E + GG + SE QG+A
Sbjct: 297 WLTVDPWLWTETPSDSPLEVTFKIRHTPDFTAGRL--ERLPSGGYQLVS---SEPIQGIA 351
Query: 362 AGQFAAFY--QGTRCIGSGVI 380
AGQFA Y Q C GS I
Sbjct: 352 AGQFATIYDPQHQLCWGSAPI 372
>gi|423249383|ref|ZP_17230399.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL03T00C08]
gi|423256304|ref|ZP_17237232.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL03T12C07]
gi|392648836|gb|EIY42521.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL03T12C07]
gi|392656930|gb|EIY50568.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL03T00C08]
Length = 353
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/367 (43%), Positives = 224/367 (61%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + E + +C EED++ + A+
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGM-DGVE--YMDCSAEEDIELSTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y IE+ R G+TPNPDV+CN IKFG F + +FD
Sbjct: 58 RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCFEQRVGK-DFDL 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD +KDQT FL+ + Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q LP+ RKDSQGICFLGKI +++FV R +GE EG ++E ETG +G H G+WF
Sbjct: 172 REIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV+KD+++N+++VS Y + + FR+ +++ P E
Sbjct: 232 HTIGQRKGLGLGGGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F L+ H E+G I+ SE QG+A GQF Y
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLL--HDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRV 345
Query: 374 CIGSGVI 380
C GSG I
Sbjct: 346 CFGSGEI 352
>gi|393783285|ref|ZP_10371459.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides salyersiae
CL02T12C01]
gi|392669354|gb|EIY62844.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides salyersiae
CL02T12C01]
Length = 354
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 222/366 (60%), Gaps = 20/366 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+A L+SGGVDSSV + LL G+ + FY+KI + +C EED++ A A +
Sbjct: 4 IAALVSGGVDSSVVVHLLCEQGYKPSLFYIKIGMDG---AEYMDCSAEEDIELATATARR 60
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+PLE+V L EYW NV +Y I++ R G+TPNPDV+CN IKFG F + +FD+ A
Sbjct: 61 YGLPLEIVDLHREYWDNVAAYAIDKIRKGQTPNPDVMCNKLIKFGCFEQRVGK-DFDFTA 119
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA + + L +KD VKDQT FL+ + Q+ +L+FP+G + K EVR+
Sbjct: 120 TGHYATTLLRD-----RKIWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGHLMKHEVRE 174
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A LPN RKDSQGICFLGKI +++FV R +GE EG ++E ETG +G H G+WF+T
Sbjct: 175 IAQNAKLPNARRKDSQGICFLGKINYNDFVRRFLGEKEGAVVEWETGKRIGTHRGYWFHT 234
Query: 261 IGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEIS- 319
IGQR+GL L GGPW+V++K+++ N+++VS Y + + F + +++G P EE S
Sbjct: 235 IGQRKGLGLGGGPWFVIKKNIEENIIYVSHGYDTEAQYGTEFSLSDFHFITGNPWEEGSN 294
Query: 320 --RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRCI 375
+ K+RH P F L V G N V SE QG+A GQF Y + C+
Sbjct: 295 EVNITFKIRHTPEFIKGRL----VRKG--NTCHVLSSEKLQGIAPGQFGVIYDEKAEVCV 348
Query: 376 GSGVIL 381
GSGV++
Sbjct: 349 GSGVVI 354
>gi|333378464|ref|ZP_08470195.1| tRNA-specific 2-thiouridylase mnmA [Dysgonomonas mossii DSM 22836]
gi|332883440|gb|EGK03723.1| tRNA-specific 2-thiouridylase mnmA [Dysgonomonas mossii DSM 22836]
Length = 358
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 160/378 (42%), Positives = 227/378 (60%), Gaps = 31/378 (8%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+K+A L+SGGVDSSV + L G+ T FY++I ++ E + +CP EED++ +
Sbjct: 1 MKIAALVSGGVDSSVVVHQLKEQGYDPTIFYIRIGMED--EQGYIDCPAEEDIEITTYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ +EVV L +EYW+NVVSY I+ + G TPNPD++CN IKFG F + EFD
Sbjct: 59 KKYGCKMEVVSLHEEYWENVVSYTIDAVKRGLTPNPDMMCNKLIKFGCF-EQKWGHEFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA + + L +KD VKDQTYFL + Q+ +L+FP+G + K +V
Sbjct: 118 IATGHYATTTEING-----KTWLSTAKDHVKDQTYFLGQIDYLQVSKLMFPIGNLLKSKV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q LP+ RKDSQGICFLGKI +++F+ R++GE +G I+E ETG LGKH G+W+
Sbjct: 173 RAIAAQAGLPSAQRKDSQGICFLGKINYNDFIRRYLGERKGKIVELETGKILGKHDGYWY 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD K N+V+VS Y D + + +V +L S E+I
Sbjct: 233 HTIGQRKGLGLSGGPWFVIKKDTKRNIVYVSNGY---DPETQYGKVVNLAGFS-FITEDI 288
Query: 319 -------SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD--QGLAAGQFAAFY 369
+ K+RH P F IE + D + ++ DD QG+A+GQF Y
Sbjct: 289 WGDFNGSKDITFKIRHTPEFTRGR--IEKIGD------LYRIYSDDKVQGIASGQFGVVY 340
Query: 370 QGTR--CIGSGVILESWD 385
CIGSG+I D
Sbjct: 341 DNDSKLCIGSGMIANDED 358
>gi|383123850|ref|ZP_09944521.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_6]
gi|382983863|gb|EES67003.2| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_6]
Length = 356
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 154/367 (41%), Positives = 225/367 (61%), Gaps = 19/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 2 MNIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIEMSTAIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ + G TPNPDV+CN IKFG F + FD+
Sbjct: 59 RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFGCFEQQVGK-NFDF 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 118 TATGHYATTIRQDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A++ LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG +G H G+WF
Sbjct: 173 REIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEREGAIIELETGKKVGTHRGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD++ N+++VS Y + FR+ +++ P ++
Sbjct: 233 HTIGQRKGLGLSGGPWFVIKKDIEENIIYVSHGYGVETQFGSEFRINDFHFITENPWKDA 292
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
+ + K+RH P F L+ E+GG+ + SE QG+A GQF Y +
Sbjct: 293 GKEIDITFKIRHTPEFTKGKLV---QEEGGQ--FRILSSEKLQGIAPGQFGVIYDEEAGI 347
Query: 374 CIGSGVI 380
C+GSG I
Sbjct: 348 CVGSGEI 354
>gi|429740634|ref|ZP_19274315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas catoniae F0037]
gi|429160546|gb|EKY03006.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas catoniae F0037]
Length = 393
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/385 (40%), Positives = 230/385 (59%), Gaps = 34/385 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++AVL+SGGVDSSV + L+ SAG+ T FY++I +E +T+C WE+D++ + +
Sbjct: 23 RIAVLVSGGVDSSVVVHLICSAGYRPTLFYIQIGMEE---KGFTDCSWEDDLEVVRHLSR 79
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q D PL+VV L +EYW +VV Y I+ R G TPNPD++CN IKFG F + +FD++
Sbjct: 80 QYDCPLQVVSLHEEYWASVVQYTIDTVRAGLTPNPDMMCNKLIKFGCFEEKWGK-DFDFI 138
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA D + L + D +KDQT FL+ ++ AQ+++L+FP G + K EVR
Sbjct: 139 ATGHYATTTFV-GDHLF----LSTAPDPIKDQTDFLAQINFAQVRKLLFPTGHLLKSEVR 193
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A L + R+DSQGICFLGK+ ++EF+ R +G+ EG+I+E ETG LG+H G+WF+
Sbjct: 194 EVAEGAHLISAKRRDSQGICFLGKVNYNEFIERALGQKEGLIIERETGKVLGRHKGYWFH 253
Query: 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS-------G 312
TIGQR+GL L GGPW+VV+K+++ N++ VS+ Y D+ R + ++S
Sbjct: 254 TIGQRKGLGLSGGPWFVVKKNIRRNIILVSQGYDPRDQYGRHIAMDWCDFISLDPWSYDA 313
Query: 313 LPPEEISRL-----------QCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L E + RL K+RH P F L + E + ED QG+A
Sbjct: 314 LVREGVDRLVGEAERQPLPITFKIRHTPEFARGTLYYDPKEG-----YRIDSEEDIQGIA 368
Query: 362 AGQFAAFYQGTR--CIGSGVILESW 384
GQ+A Y C GSG+I + W
Sbjct: 369 PGQYAVLYDENHHICFGSGMITKGW 393
>gi|375357724|ref|YP_005110496.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis 638R]
gi|301162405|emb|CBW21950.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis 638R]
Length = 353
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/367 (43%), Positives = 221/367 (60%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ A+
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELCTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y IE+ R G+TPNPDV+CN IKFG F + +FD
Sbjct: 58 RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCFEQQVGK-DFDL 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD +KDQT FL+ + Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q LP+ RKDSQGICFLGKI +++FV R +GE EG ++E ETG +G H G+WF
Sbjct: 172 REIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV+KD+++N+++VS Y + + FR+ +++ P E
Sbjct: 232 HTIGQRKGLGLGGGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F L+ H E+G I+ SE QG+A GQF Y
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLL--HDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRV 345
Query: 374 CIGSGVI 380
C GSG I
Sbjct: 346 CFGSGEI 352
>gi|317473871|ref|ZP_07933151.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
gi|316909948|gb|EFV31622.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
Length = 365
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 225/367 (61%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +AVLLSGGVDSSV + LL GH + FY+KI ++D + + +C EED++ A AV
Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKIG-KDDAD--YMDCSAEEDLEMASAVA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y I++ R G TPNPDV+CN IKFG F + + +FD+
Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFGCF-ERYAGKDFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L + D VKDQT FL+ + Q+ +L+FPLG + K+EV
Sbjct: 117 TATGHYAATILQNG-----KVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + LP+ R+DSQGICFLGKI +++FV R +GE EG I+E ETG LG H G+WF
Sbjct: 172 RDIALKAKLPSARRRDSQGICFLGKINYNDFVRRFLGEKEGRIIELETGKILGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV KD NV++VSR Y + + F + +++ P E +
Sbjct: 232 HTIGQRKGLGLGGGPWFVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITENPWEGV 291
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY-QGTR- 373
+ K+RH P F L+ + G+ +V E QG+A GQF Y + +R
Sbjct: 292 EGEIPVTFKIRHTPDFIGGKLLQD-----GDGYRIVS-EEKLQGIAPGQFGVVYDEASRL 345
Query: 374 CIGSGVI 380
CIGSG I
Sbjct: 346 CIGSGEI 352
>gi|319902815|ref|YP_004162543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides helcogenes P 36-108]
gi|319417846|gb|ADV44957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides helcogenes P 36-108]
Length = 354
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 225/367 (61%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +AVLLSGGVDSSV + LL G+ + FY+KI ++D + + +C EED++ A A+
Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIG-KDDAD--YMDCAAEEDLEIASAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ +PLEVV L EYW NV +Y I++ G TPNPDV+CN IKFG F + + +FD+
Sbjct: 58 RRYGLPLEVVDLHREYWDNVAAYAIDKISRGLTPNPDVMCNKLIKFGCF-ERRAGKDFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA V + +V D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYATTVLQTGKIWLGTAV-----DPVKDQTDFLAQIDYLQVSKLMFPLGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + LP+ R+DSQGICFLGKI +++FV R +GE EG I+E ETG +GKH G+WF
Sbjct: 172 RDIALRAKLPSARRRDSQGICFLGKINYNDFVRRFLGEREGDIVELETGKKIGKHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV KDV NVV+VSR Y + + F + +++ P ++
Sbjct: 232 HTIGQRKGLGLSGGPWFVVRKDVDGNVVYVSRGYNTEQQFGNEFCIRDFHFITDNPWGDV 291
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ--GTR 373
++ K+RH P F L+ E+GG +I E QG+A GQF Y
Sbjct: 292 ENDIKVTFKIRHTPEFIKGRLL---REEGGYHIVS---DEKLQGIAPGQFGVVYDVASRL 345
Query: 374 CIGSGVI 380
CIGSG I
Sbjct: 346 CIGSGEI 352
>gi|375255310|ref|YP_005014477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Tannerella forsythia ATCC 43037]
gi|363408520|gb|AEW22206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Tannerella forsythia ATCC 43037]
Length = 445
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 228/377 (60%), Gaps = 21/377 (5%)
Query: 11 CSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEED 70
C K +++ L+SGGVDSSV + LL AG+ T FY++I ++ ++ + +CP EED
Sbjct: 84 CGKVIGKSMEIVALVSGGVDSSVVVHLLKEAGYDPTIFYIRIGMED--KDGYIDCPAEED 141
Query: 71 MKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDA 130
++ + + +EVV L DEYW VVSY IE + G TPNPD++CN IKFG F D
Sbjct: 142 IEMTTYIAKKYGCRMEVVSLHDEYWDKVVSYTIESVKRGLTPNPDMMCNRYIKFGCFEDR 201
Query: 131 ISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPL 190
+FD +A+GHYA + + L +KD VKDQT FL ++ Q+ +L+FP+
Sbjct: 202 WGK-DFDKIATGHYATTTEING-----RTWLSTAKDPVKDQTDFLGQITNLQISKLMFPI 255
Query: 191 GCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250
G + K EVR A+ +LP+ R+DSQGICFLGKI +++F+ R++G EG I+E ETG +
Sbjct: 256 GHLMKSEVRAIASAQNLPSAQRRDSQGICFLGKIDYNDFIERYLGRREGKIIELETGKVI 315
Query: 251 GKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
GKH G+WF+TIGQR+GL L GGPW+V+ KDV +N+++VS Y + + R+ ++
Sbjct: 316 GKHQGYWFHTIGQRKGLGLSGGPWFVIRKDVDDNIIYVSNGYDPETQYGKTIRMEGFHFI 375
Query: 311 S----GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ G +E + K+RH P F + ++ G ++ ++ + QG+A GQFA
Sbjct: 376 TEDIWGTFDDE-KEITFKIRHTPEFTH-----GYIRRFG-DLYTIRSDDKIQGIAPGQFA 428
Query: 367 AFYQGTR--CIGSGVIL 381
Y CIGSG+I+
Sbjct: 429 VVYDKEHHLCIGSGMII 445
>gi|53712700|ref|YP_098692.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46]
gi|81608589|sp|Q64WG8.1|MNMA2_BACFR RecName: Full=tRNA-specific 2-thiouridylase MnmA 2
gi|52215565|dbj|BAD48158.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis YCH46]
Length = 353
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/367 (42%), Positives = 222/367 (60%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y IE+ R G+TPNPDV+CN IKFG F + +FD
Sbjct: 58 RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCFEQQVGK-DFDL 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD +KDQT FL+ + Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG ++E ETG +G H G+WF
Sbjct: 172 REIALRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV+KD+++N+++VS Y + + FR+ +++ P E
Sbjct: 232 HTIGQRKGLGLGGGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F L+ H E+G I+ SE QG+A GQF Y
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLL--HDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRV 345
Query: 374 CIGSGVI 380
C GSG I
Sbjct: 346 CFGSGEI 352
>gi|427386602|ref|ZP_18882799.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides oleiciplenus YIT
12058]
gi|425726092|gb|EKU88958.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides oleiciplenus YIT
12058]
Length = 353
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 224/366 (61%), Gaps = 19/366 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +AVLLSGGVDSSV + LL GH + FY+KI + +C EED + A AV
Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKIGMDG---TDYVDCSAEEDWEMASAVA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ +PLE++ L +EYW+ V +Y I++ R G TPNPDV+CN IKFG F + EFD+
Sbjct: 58 RRYGLPLEMIDLQNEYWEQVAAYAIDKIRRGLTPNPDVMCNRFIKFGCFEQKVGK-EFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + +V D VKDQT FL+ + Q+ +L+FPLG + K+EV
Sbjct: 117 TATGHYATTISKDGKIWLGTAV-----DPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP R+DSQGICFLGKI +++FV R +GE EG I+E E+G +G H G+WF
Sbjct: 172 RDIARMAGLPTARRRDSQGICFLGKINYNDFVRRFLGEREGDIVEWESGKKVGAHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V+ KD++ NV++VSR Y + + R F++ +++ P +E
Sbjct: 232 HTIGQRKGLGLSGGPWFVIRKDIEENVLYVSRGYDTQWQYGREFKMHDFHFITENPWQED 291
Query: 319 SRLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY-QGTR-C 374
+ K+RH P F LM E GE ++ + ++ QG+A GQF Y + +R C
Sbjct: 292 KEVDVTFKIRHTPEFMKGKLMRE-----GEAYRIISV-DNLQGIAPGQFGVVYDEASRIC 345
Query: 375 IGSGVI 380
IGSG I
Sbjct: 346 IGSGEI 351
>gi|329961014|ref|ZP_08299293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fluxus YIT 12057]
gi|328532300|gb|EGF59104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fluxus YIT 12057]
Length = 355
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/368 (44%), Positives = 224/368 (60%), Gaps = 21/368 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +AVLLSGGVDSSV + LL G+ + FY++I ++D + + +C EED++ A A+
Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIRIG-RDDTD--YMDCSAEEDLEMASAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y I++ R G TPNPDV+CN IKFG F + EFD+
Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIDKIRRGLTPNPDVMCNKLIKFGCFERQVGR-EFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA V + L + D +KDQT FL+ + Q+ RL+FPLG + K+EV
Sbjct: 117 TATGHYATTVLLDG-----KTWLGTAVDPIKDQTDFLAQIDYLQVSRLMFPLGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + LP+ R+DSQGICFLGKI +++FV R +GE EG I+E ETG LGKH G+WF
Sbjct: 172 RDIALRAGLPSARRRDSQGICFLGKINYNDFVRRFLGEREGDIIELETGKKLGKHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP--PE 316
+TIGQR+GL L GGPW+VV KD++ NV++VSR Y + + FR+ +++ P E
Sbjct: 232 HTIGQRKGLGLGGGPWFVVRKDIEGNVIYVSRGYDTELQFGNEFRMRDFHFITDNPWKKE 291
Query: 317 EISRLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR- 373
E ++ K+RH P F L E E +V E QG+A GQF Y
Sbjct: 292 ENGAVEVTFKIRHTPEFMKGRLFREP-----EGYRIVS-DEKLQGIAPGQFGVIYDSASR 345
Query: 374 -CIGSGVI 380
C+GSG I
Sbjct: 346 LCVGSGEI 353
>gi|218130411|ref|ZP_03459215.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697]
gi|217987412|gb|EEC53742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides eggerthii DSM 20697]
Length = 365
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 161/367 (43%), Positives = 225/367 (61%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +AVLLSGGVDSSV + LL GH + FY+KI ++D + + +C EED++ A AV
Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKIG-KDDAD--YMDCSAEEDLEMASAVA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y I++ R G TPNPDV+CN IKFG F + + +FD+
Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFGCF-ERYAGKDFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L + D VKDQT FL+ + Q+ +L+FPLG + K+EV
Sbjct: 117 TATGHYAATILQNG-----KVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + LP+ R+DSQGICFLG+I +++FV R +GE EG I+E ETG LG H G+WF
Sbjct: 172 RDIALKAKLPSARRRDSQGICFLGRINYNDFVRRFLGEKEGRIIELETGKILGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV KD NV++VSR Y + + F + +++ P E +
Sbjct: 232 HTIGQRKGLGLGGGPWFVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITENPWEGV 291
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY-QGTR- 373
+ K+RH P F L+ + G+ +V E QG+A GQF Y + +R
Sbjct: 292 EGEIPVTFKIRHTPDFIGGKLLQD-----GDGYRIVS-EEKLQGIAPGQFGVVYDEASRL 345
Query: 374 CIGSGVI 380
CIGSG I
Sbjct: 346 CIGSGEI 352
>gi|423299230|ref|ZP_17277255.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides finegoldii
CL09T03C10]
gi|408473039|gb|EKJ91561.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides finegoldii
CL09T03C10]
Length = 355
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/370 (44%), Positives = 223/370 (60%), Gaps = 23/370 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI E E + +C EED++ + A
Sbjct: 1 MNIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGM-EGAE--YMDCSAEEDIELSVATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LE+V L EYW+NV +Y I + R G TPNPDV+CN IKFG F I EFD+
Sbjct: 58 RKYGLSLEIVDLHKEYWENVATYAIGKIRQGLTPNPDVMCNKLIKFGCFEQRIGK-EFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + Q L +KD VKDQT FL+ + Q+ +L+FP+G ++K EV
Sbjct: 117 TATGHYATTI-----QRDGKVWLGTAKDPVKDQTDFLAQIDYLQISKLMFPIGGLTKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A LP+ RKDSQGICFLGKI +++FV R +GE EGVI+E ETG LG H G+WF
Sbjct: 172 REIADAAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEREGVIVELETGKKLGTHHGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGL 313
+TIGQR+GL L GGPW+VV+KD++ N+++VS Y Y + + R F + G
Sbjct: 232 HTIGQRKGLGLSGGPWFVVKKDIQENIIYVSCGYGVETQYGNEFQMRDFHFITDNIWKGQ 291
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QG 371
E + K+RH P F L+++ G+N + SE QG+A GQF Y +
Sbjct: 292 DKE--VDITFKIRHTPEFTKGKLIMK-----GDNQFHILSSEKLQGIAPGQFGVIYDKEA 344
Query: 372 TRCIGSGVIL 381
C+GSG I+
Sbjct: 345 RICVGSGEII 354
>gi|229495661|ref|ZP_04389390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas endodontalis ATCC 35406]
gi|229317431|gb|EEN83335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas endodontalis ATCC 35406]
Length = 383
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 225/376 (59%), Gaps = 27/376 (7%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+AVL SGGVDSSVA+ LL AG FY++I ED E F +CP EEDM+ + +
Sbjct: 21 IAVLASGGVDSSVAVHLLLQAGFRPDLFYIRIGM-EDEEGF-IDCPAEEDMEMVTLLARK 78
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ EV+ L EYW+ VV Y IE R G TPNPD++CN IKFG F + + +DY+A
Sbjct: 79 YQLHYEVIDLHKEYWERVVKYTIESVRQGLTPNPDMMCNKLIKFGVFEERVGH-RYDYIA 137
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA S+A + K + L + D VKDQT FL+ ++ Q+ +L+FPLGC++K++VR
Sbjct: 138 TGHYA----STARVDGK-TFLATAPDPVKDQTDFLAQINFKQISKLLFPLGCLTKQQVRM 192
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + L N RKDSQGICFLGKI +++F+ R++G+ G I+E ETG LG H GFWF+T
Sbjct: 193 VAEEAGLANAHRKDSQGICFLGKINYNDFIERYLGKRPGRIIEYETGKTLGTHQGFWFHT 252
Query: 261 IGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG--LPPE-- 316
IGQR+GL L GGPW+VV+KD K N++ VSR Y + V +++ PE
Sbjct: 253 IGQRKGLGLSGGPWFVVKKDCKRNIILVSRGYDPLTQYGTEIFVDKFDFITEDLFAPEGA 312
Query: 317 -------EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
++ + K+RH P F I +E G ++ + QG+A GQ+A Y
Sbjct: 313 VGNKEGAQVVPITLKIRHTPEFVRAT--IRRLERGYHIVSETPI----QGIAPGQYAVIY 366
Query: 370 --QGTRCIGSGVILES 383
+ C GSG+I++
Sbjct: 367 DPESRLCFGSGMIVKG 382
>gi|423258356|ref|ZP_17239279.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL07T00C01]
gi|423264672|ref|ZP_17243675.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL07T12C05]
gi|387777258|gb|EIK39356.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL07T00C01]
gi|392705362|gb|EIY98493.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL07T12C05]
Length = 353
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 158/367 (43%), Positives = 221/367 (60%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y IE+ R G+TPNPDV+CN IKFG F + +FD
Sbjct: 58 RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCFEQQVGK-DFDL 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD +KDQT FL+ + Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q LP+ RKDSQGICFLGKI +++FV R +GE EG ++E ETG +G H G+WF
Sbjct: 172 REIALQAGLPSACRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV+KD+ +N+++VS Y + + FR+ +++ P E
Sbjct: 232 HTIGQRKGLGLGGGPWFVVKKDILDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F L+ H E+G I+ SE QG+A GQF Y
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLL--HDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRV 345
Query: 374 CIGSGVI 380
C GSG I
Sbjct: 346 CFGSGEI 352
>gi|423224409|ref|ZP_17210877.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392635967|gb|EIY29854.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 353
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 161/367 (43%), Positives = 225/367 (61%), Gaps = 21/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ ++VLLSGGVDSSV + LL G+ + FY+KI + +C EED + A A+
Sbjct: 1 MNISVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIGMDG---TDYMDCSAEEDWEMATAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ +PLE+V L EYW+ V +Y I++ R G TPNPDV+CN IKFG F + EFD+
Sbjct: 58 HRYGLPLEMVDLQKEYWEQVAAYAIDKIRRGLTPNPDVMCNRFIKFGCFEQKVGK-EFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA VH +V D VKDQT FL+ + Q+ +L+FPLG + K+EV
Sbjct: 117 TATGHYATTVHKDGKVWLGTAV-----DPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP R+DSQGICFLGKI +++FV R +GE +G ++E ETG +G H G+WF
Sbjct: 172 RDIARNAGLPTARRRDSQGICFLGKINYNDFVRRFLGERQGDVIEWETGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+V+ KDV+ NV++VSR Y + + R F++ +++ P
Sbjct: 232 HTIGQRKGLGLSGGPWFVIRKDVEANVLYVSRGYDTQWQYGREFKIHDFHFITENPWLHN 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY-QGTR- 373
+E+ + K+RH P F L+ E GE +V SE+ QG+A GQF Y + +R
Sbjct: 292 QEVD-VTFKIRHTPEFMKGKLIRE-----GEIYRIVS-SENLQGIAPGQFGVVYDEASRI 344
Query: 374 CIGSGVI 380
CIGSG I
Sbjct: 345 CIGSGEI 351
>gi|212550689|ref|YP_002309006.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548927|dbj|BAG83595.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
Length = 355
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 157/369 (42%), Positives = 221/369 (59%), Gaps = 19/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+K+A L+SGGVDSSV + L G+ FY++I + + + +C EED++ +
Sbjct: 1 MKIAALVSGGVDSSVVVHQLKDMGYDPVIFYIQIGMENN--EGYIDCSSEEDIEITTFIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ +E+V L EYW+N+++Y I+ G TPNPD++CN IKFG F + EFD
Sbjct: 59 RKYGCRIEIVSLQKEYWENIIAYTIDTVHRGLTPNPDIMCNKLIKFGIF-EQRWGYEFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA + D+ Y L + DKVKDQTYFL + Q+ +L+FP+G + K EV
Sbjct: 118 IATGHYATTTEIN-DEIY----LSTAFDKVKDQTYFLGQIDYLQISKLMFPIGHLQKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + DLP+ RKDSQGICFLGKI +S F+ R++GE G I+E ETG LG H G+WF
Sbjct: 173 RIIAAKQDLPSAFRKDSQGICFLGKINYSNFIRRYLGEKLGKIVELETGKILGNHKGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYS---FDKKRRLFRVGSLKWLSGLPP 315
YTIGQR+GL L GGPW+V++KDV+ N+VFVS +Y S + K L RV +
Sbjct: 233 YTIGQRKGLYLSGGPWFVIKKDVQQNIVFVSNDYKSKIRYSKSLNLERVHFITRNIFDDF 292
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
+ + K+RH P F I H+ N+ ++ QG+AAGQF Y +
Sbjct: 293 IDTKEIAFKIRHTPKFTFGK--IRHI----GNVYRIESESKIQGIAAGQFGVIYDKRCKL 346
Query: 374 CIGSGVILE 382
C+GSGVI+E
Sbjct: 347 CLGSGVIIE 355
>gi|189466604|ref|ZP_03015389.1| hypothetical protein BACINT_02979 [Bacteroides intestinalis DSM
17393]
gi|189434868|gb|EDV03853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides intestinalis DSM 17393]
Length = 353
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 162/366 (44%), Positives = 226/366 (61%), Gaps = 19/366 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +AVLLSGGVDSSV + LL G+ + FY+KI D F +C EED + A AV
Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIGM--DGAEF-MDCSAEEDWEMASAVA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ +PLE++ L +EYW+ V +Y I++ R G TPNPDV+CN IKFG F + EFD+
Sbjct: 58 RRYGLPLEMIDLQNEYWEQVAAYAIDKIRRGLTPNPDVMCNRFIKFGCFEQKVGK-EFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA V +V D VKDQT FL+ + Q+ +L+FPLG + K+EV
Sbjct: 117 TATGHYATTVSKDGKIWLGTAV-----DPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP R+DSQGICFLGKI +++FV +GE EG I+E E+G +G H G+WF
Sbjct: 172 RDIARTAGLPTARRRDSQGICFLGKINYNDFVRHFLGEREGDIVEWESGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V+ KD++ NV++VSR Y + + R FR+ +++ P +E
Sbjct: 232 HTIGQRKGLGLSGGPWFVIRKDIEENVLYVSRGYDTQWQYGREFRMHDFHFITENPWQEA 291
Query: 319 SRLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY-QGTR-C 374
+ K+RH P F L V++GG N ++ S++ QG+A GQF Y + +R C
Sbjct: 292 EEVDVTFKIRHTPEFMKGKL----VQEGG-NYRIIS-SDNLQGIAPGQFGVVYDEASRIC 345
Query: 375 IGSGVI 380
IGSG I
Sbjct: 346 IGSGEI 351
>gi|329954341|ref|ZP_08295433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides clarus YIT 12056]
gi|328527609|gb|EGF54602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides clarus YIT 12056]
Length = 365
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/367 (43%), Positives = 220/367 (59%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +AVLLSGGVDSSV + LL G+ + FY+KI ++D + + +C EED++ A AV
Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIG-KDDAD--YMDCSAEEDLEMASAVA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y IE+ R G TPNPDV+CN IKFG F + +FD+
Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIEKVRRGFTPNPDVMCNKLIKFGCFEQQVGK-DFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA V + + L + D +KDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYATTVLRNGK-----TWLGTALDPIKDQTDFLAQIDYLQVSKLMFPLGGLMKREV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + LP+ R+DSQGICFLGKI +++FV R +GE EG I+E ETG LG H G+WF
Sbjct: 172 RDIALKAKLPSARRRDSQGICFLGKINYNDFVRRFLGEKEGRIVELETGKILGAHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV KD NV++VSR Y + + F + +++ P E +
Sbjct: 232 HTIGQRKGLGLSGGPWFVVRKDTDENVIYVSRGYDTELQYGHEFGMQDFHFITENPWEGV 291
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ--GTR 373
+ K+RH P F L+ + E ++ E QG+A GQF Y
Sbjct: 292 KEAIPVTFKIRHTPEFIRGKLLRD------ETGCLIVSEEKLQGIAPGQFGVVYDEAAKL 345
Query: 374 CIGSGVI 380
CIGSG I
Sbjct: 346 CIGSGEI 352
>gi|298384487|ref|ZP_06994047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 1_1_14]
gi|298262766|gb|EFI05630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 1_1_14]
Length = 355
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/367 (41%), Positives = 224/367 (61%), Gaps = 19/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 1 MNIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIEMSTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ + G TPNPDV+CN IKFG F + FD+
Sbjct: 58 RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFGCFEQQVGK-NFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 117 TATGHYATTIRQDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A++ LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG +G H G+WF
Sbjct: 172 REIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEREGAIIELETGKKVGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KDV+ N+++VS Y + FR+ +++ ++
Sbjct: 232 HTIGQRKGLGLSGGPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENLWKDA 291
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
+ + K+RH P F L+ E+GG+ + SE QG+A GQF Y +
Sbjct: 292 GKEIDITFKIRHTPEFTKGKLV---QEEGGQ--FRILSSEKLQGIAPGQFGVIYDEEAGI 346
Query: 374 CIGSGVI 380
C+GSG I
Sbjct: 347 CVGSGEI 353
>gi|333029643|ref|ZP_08457704.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides coprosuis DSM
18011]
gi|332740240|gb|EGJ70722.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides coprosuis DSM
18011]
Length = 356
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/366 (43%), Positives = 221/366 (60%), Gaps = 21/366 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+A LLSGGVDSSV + LL G FY+KI +D E + C EED++ A+A +
Sbjct: 4 IATLLSGGVDSSVVVHLLCEQGFKPDLFYIKIGM-DDKE--YMGCSAEEDIELAQATARK 60
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ L+V+ L EYW +VV Y IE+ G TPNPDV+CN IKFG F + + ++D+ A
Sbjct: 61 YGLTLDVIDLQQEYWDSVVKYTIEKVSKGYTPNPDVMCNKLIKFGCFEEKVG-YQYDFTA 119
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA H DQ + L +KD +KDQT FL+ + + Q+ +L+FPLG + K EVR
Sbjct: 120 TGHYAST-HCIDDQTW----LGTAKDPLKDQTDFLAQIDKLQVSKLMFPLGNLMKHEVRD 174
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG LGKH GFWF+T
Sbjct: 175 IALNAKLPSAKRKDSQGICFLGKINYNDFVKRFLGEKEGPIIELETGKILGKHKGFWFHT 234
Query: 261 IGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP----PE 316
IGQR+G+ L GGPWYVV+KD++ N ++VSR + + F + +++ P P+
Sbjct: 235 IGQRKGIGLAGGPWYVVKKDIQENTIYVSRGFDVETQYGDHFTMNDFHFITANPWKEFPK 294
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
E ++ K+RH P + L + + +++ E+ QG+A GQF Y C
Sbjct: 295 EGVEIKFKIRHTPEYSPGYLFQKGTQ------YLLRSKENLQGIAPGQFGVIYDKDAKIC 348
Query: 375 IGSGVI 380
IGSG I
Sbjct: 349 IGSGEI 354
>gi|424662395|ref|ZP_18099432.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 616]
gi|404577673|gb|EKA82410.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 616]
Length = 353
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 224/367 (61%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y IE+ R G+TPNPDV+CN IKFG F + +FD
Sbjct: 58 RRYGLELEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCFEQQVGK-DFDL 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + Q + + L +KD +KDQT FL+ + Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTL-----QLGEKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG ++E ETG +G H G+WF
Sbjct: 172 REIALKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIELETGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV+KD+++N+++VS Y + + FR+ +++ P ++
Sbjct: 232 HTIGQRKGLGLGGGPWFVVKKDIQDNIIYVSHGYDADKQYGYEFRMKDFNFITSNPWKDS 291
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F L+ + DG I+ SE QG+A GQF Y
Sbjct: 292 TGEEDVTFKIRHTPEFIKGRLIQD--ADGYRIIS----SEKLQGIAPGQFGVIYDAESRI 345
Query: 374 CIGSGVI 380
C GSG I
Sbjct: 346 CFGSGEI 352
>gi|313145808|ref|ZP_07808001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis 3_1_12]
gi|423279547|ref|ZP_17258460.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 610]
gi|313134575|gb|EFR51935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis 3_1_12]
gi|404584870|gb|EKA89507.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 610]
Length = 353
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 224/367 (61%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y IE+ R G+TPNPDV+CN IKFG F + +FD
Sbjct: 58 RRYGLELEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCFEQQVGK-DFDL 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + Q + + L +KD +KDQT FL+ + Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTL-----QLGEKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG ++E ETG +G H G+WF
Sbjct: 172 REIALKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIELETGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV+KD+++N+++VS Y + + FR+ +++ P ++
Sbjct: 232 HTIGQRKGLGLGGGPWFVVKKDIQDNIIYVSHGYDADKQYGYEFRMKDFNFITSNPWKDS 291
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F L+ + DG I+ SE QG+A GQF Y
Sbjct: 292 TGEEDVTFKIRHTPEFIKGRLIQD--ADGYRIIS----SEKLQGIAPGQFGVIYDAESRI 345
Query: 374 CIGSGVI 380
C GSG I
Sbjct: 346 CFGSGEI 352
>gi|304383810|ref|ZP_07366268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella marshii DSM 16973]
gi|304335066|gb|EFM01338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella marshii DSM 16973]
Length = 382
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/363 (44%), Positives = 213/363 (58%), Gaps = 18/363 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+AVLLSGGVDSSV L L AG FY+KI +E E W +C EED++ A AV
Sbjct: 28 KIAVLLSGGVDSSVVLHELSRAGLQPDCFYIKIGPEEHEE--W-DCSSEEDLEMAGAVAA 84
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ LEVV EYW V Y +E+ + G TPNPDV+CN IKFGAF D E++ +
Sbjct: 85 RYGCRLEVVDCHQEYWNQVTKYTLEKVKAGFTPNPDVMCNRLIKFGAF-DEKKGHEYELI 143
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ + L S D VKDQT FL+ L QL++ +FP+G KEEVR
Sbjct: 144 ATGHYAQTEIIDGHK-----WLVTSPDPVKDQTDFLAQLYDWQLRKALFPIGHYRKEEVR 198
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L N RKDSQGICFLGKI +++++ R++GE EG ++E ETG +GKH G WF+
Sbjct: 199 QIAEREHLINAKRKDSQGICFLGKINYNDYIRRYLGENEGEVVELETGKCIGKHKGLWFH 258
Query: 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEIS 319
TIGQR GL GGPWY V KDVK N+++VS+ + RR F + +L+ P E+
Sbjct: 259 TIGQRHGLGFGGGPWYAVRKDVKRNILYVSKGFEPATAYRRDFEIADFHFLT--LPVEME 316
Query: 320 RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRCIGS 377
+ K+RH P ++ L E G V + QG+A GQF Y Q RC GS
Sbjct: 317 DVCFKIRHTPEYHKAKL-----EKRGNGAYTVHAEKPVQGVAPGQFCVVYDEQHHRCFGS 371
Query: 378 GVI 380
G I
Sbjct: 372 GEI 374
>gi|167763337|ref|ZP_02435464.1| hypothetical protein BACSTE_01711 [Bacteroides stercoris ATCC
43183]
gi|167698631|gb|EDS15210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides stercoris ATCC 43183]
Length = 365
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 217/367 (59%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +AVLLSGGVDSSV + LL GH + FY+KI ++D E + +C EED++ A AV
Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKIG-KDDAE--YMDCSAEEDLEMASAVA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y IE+ G TPNPDV+CN IKFG F + FD+
Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIEKVSRGFTPNPDVMCNKLIKFGCFEQRVGR-HFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA V + + L + D VKDQT FL+ + Q+ +L+FPLG + K+EV
Sbjct: 117 TATGHYATTVLQNGK-----TWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + LP+ R+DSQGICFLG+I +++FV R +GE EG I+E ETG LG H G+WF
Sbjct: 172 RDIALKAQLPSARRRDSQGICFLGRINYNDFVRRFLGEKEGRIVELETGKILGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV KD NV++VS Y + + F + +++ P E I
Sbjct: 232 HTIGQRKGLGLSGGPWFVVRKDTDENVIYVSHGYDTELQYGHEFSMQDFHFITENPWEGI 291
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ--GTR 373
+ K+RH PGF L + E + E QG+A GQF Y
Sbjct: 292 KDEIPVTFKIRHAPGFIGGRLWQD------ETGYRIVSDEKLQGIAPGQFGVVYDEAAKL 345
Query: 374 CIGSGVI 380
CIGSG I
Sbjct: 346 CIGSGEI 352
>gi|258648071|ref|ZP_05735540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella tannerae ATCC 51259]
gi|260851930|gb|EEX71799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella tannerae ATCC 51259]
Length = 364
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/368 (43%), Positives = 221/368 (60%), Gaps = 22/368 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+K A L+SGGVDS+VA+ LL G + FY+KI E W +C EED + A AV
Sbjct: 4 MKTAALISGGVDSAVAVHLLKEQGITPDLFYIKIGNGPQGE--W-DCKAEEDWEMATAVA 60
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ L+++ L EYW VV YI++ R G TPN DV+CN IKFG F + +D
Sbjct: 61 RRYGCKLKLIDLQKEYWDEVVGYIVDRLRKGLTPNSDVMCNKYIKFGCFEER-EGHNYDR 119
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+ A + + L + D +KDQT FL+ L +++LIFP+G + K+EV
Sbjct: 120 IATGHYAQTETDEAGRVW----LTTAPDPIKDQTDFLAQLDGFSVRKLIFPIGGLMKDEV 175
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L RKDSQGICFLGKI FSE +++GE EG+++E ETG+ +GKH G+WF
Sbjct: 176 RKIAQAAHLAPAKRKDSQGICFLGKISFSELARKYLGEKEGLVVEQETGNIIGKHKGYWF 235
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
YTIGQR+GL GGPWYVV KD+K N+++VSR + + + FR+ +++ P E
Sbjct: 236 YTIGQRKGLGFGGGPWYVVRKDIKRNIIYVSRGFETKAAYGKAFRIEMPHFITYNPYEAD 295
Query: 319 S--RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD--QGLAAGQFAAFY--QGT 372
R+ KVRH P F L++ GG+ +L D+ QG+A GQFA Y Q
Sbjct: 296 GDYRVTFKVRHTPEFTPGRLLVR----GGK----YELHSDELIQGIAPGQFAVLYDEQAH 347
Query: 373 RCIGSGVI 380
RC+GSG I
Sbjct: 348 RCLGSGEI 355
>gi|313204968|ref|YP_004043625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paludibacter propionicigenes WB4]
gi|312444284|gb|ADQ80640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paludibacter propionicigenes WB4]
Length = 353
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 223/369 (60%), Gaps = 22/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + +L +G++ + FY+KI +D C EED++ A +
Sbjct: 1 MNIATLLSGGVDSSVVVHMLKESGYTPSLFYIKIGMDDDE---LLHCTSEEDIEMASLIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ L+VV L +YW NVVSY IE+ + G TPNPDV+CN IKFG F + +FD
Sbjct: 58 RKYGCSLDVVDLHKDYWDNVVSYTIEKVKQGLTPNPDVMCNKLIKFGVFEQRVGK-DFDK 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD +KDQT FL+ ++ Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTLEKNG-----KVYLSTAKDPIKDQTDFLAQINSLQVSKLMFPIGHLMKNEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R AT+ +LP+ R+DSQGICFLGK+ +++F+ R++GE G I+E ETG LGKH G+WF
Sbjct: 172 RDIATKANLPSAKRQDSQGICFLGKVNYNDFIRRYLGEKSGPIVELETGKILGKHNGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE-- 316
+T+GQR+GL L GGPWYV++KDV N+V+ S+ + + + F + +++ P E
Sbjct: 232 HTVGQRKGLGLSGGPWYVIKKDVAANIVYASKGFDAEAQYGYEFSMRDFHFITDNPWENR 291
Query: 317 --EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR- 373
EI + K+RH P F ++ +G I+ +L QG+A GQF Y
Sbjct: 292 RSEID-VTFKIRHTPDFTKGKII--QTPEGYRLISTERL----QGIAPGQFGVVYDAESR 344
Query: 374 -CIGSGVIL 381
C+GSG I+
Sbjct: 345 ICVGSGEIM 353
>gi|393787356|ref|ZP_10375488.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides nordii
CL02T12C05]
gi|392658591|gb|EIY52221.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides nordii
CL02T12C05]
Length = 355
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 218/367 (59%), Gaps = 21/367 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ A +
Sbjct: 4 IAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELATVTARK 60
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+PL +V L EYW NV +Y I++ + G+TPNPDV+CN IKFG F + +FD+ A
Sbjct: 61 YGLPLIIVDLHREYWDNVAAYAIDKIKKGQTPNPDVMCNKLIKFGCFEQRVGK-DFDFTA 119
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA + Q + L +KD VKDQT FL+ + Q+ +L+FP+G + K EVR+
Sbjct: 120 TGHYATTL-----QRDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGHLMKNEVRE 174
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + LP+ RKDSQGICFLGKI +++FV R +GE EG ++E ETG +G H G+WF+T
Sbjct: 175 IALKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIELETGKKIGTHRGYWFHT 234
Query: 261 IGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP----PE 316
IGQR+GL L GGPW+V++KD+++N+V+VS Y + F +G +++ P
Sbjct: 235 IGQRKGLGLSGGPWFVIKKDIQDNIVYVSHGYGVETQFGNEFSLGDFHYITDNPWWESEA 294
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ--GTRC 374
E + K+RH P F L E E+ + SE QG+A GQF Y C
Sbjct: 295 EGVDITFKIRHTPEFIKGKLFRE------EDRYRILSSEKLQGIAPGQFGVVYDELAEVC 348
Query: 375 IGSGVIL 381
IGSG I+
Sbjct: 349 IGSGEII 355
>gi|150010344|ref|YP_001305087.1| tRNA-specific 2-thiouridylase MnmA [Parabacteroides distasonis ATCC
8503]
gi|423333153|ref|ZP_17310934.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides distasonis
CL03T12C09]
gi|205816895|sp|A6LIF1.1|MNMA_PARD8 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|149938768|gb|ABR45465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Parabacteroides distasonis ATCC 8503]
gi|409228033|gb|EKN20925.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides distasonis
CL03T12C09]
Length = 358
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 224/369 (60%), Gaps = 19/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A L+SGGVDSSV + L AG+ T FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMED--KDGYIDCPAEEDIEITSYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ E+V L DEYW VVSY IE + G TPNPD++CN IKFG F + +FD
Sbjct: 59 RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFGCFEEKWGK-DFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA + L +KD VKDQT FL +++ Q+++L+FP+G + K EV
Sbjct: 118 IATGHYATTTEIDG-----KTWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R++G+ G I+E ETG LGKH G+WF
Sbjct: 173 RAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRPGKIVELETGKVLGKHNGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD+K N+++VS Y + ++ + +++ P E
Sbjct: 233 HTIGQRKGLGLSGGPWFVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITEDPWGEF 292
Query: 319 ---SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ K+RH P F + I + D + V+ E QG+A GQ++ Y
Sbjct: 293 EGEKEITFKIRHTPEF--THGYIRRIGD----LYRVESDEKIQGIAPGQYSVIYDKDHHL 346
Query: 374 CIGSGVILE 382
C+GSG+I++
Sbjct: 347 CLGSGMIID 355
>gi|270293669|ref|ZP_06199871.1| tRNA methyl transferase [Bacteroides sp. D20]
gi|270275136|gb|EFA20996.1| tRNA methyl transferase [Bacteroides sp. D20]
Length = 366
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 219/367 (59%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +AVLLSGGVDSSV + LL G+ + FY+KI ++D + + +C EEDM+ A A+
Sbjct: 13 MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIG-RDDAD--YMDCSAEEDMEMASAIA 69
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW V +Y I++ R G TPNPDV+CN IKFG F + +FD
Sbjct: 70 RRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFGCFEQRVGK-DFDV 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA V + L + D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 129 TATGHYATTVLRDG-----KTWLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKNEV 183
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + LP+ R+DSQGICFLGKI +++FV R +GE EG I+E ETG LGKH G+WF
Sbjct: 184 RDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLGEREGDIVELETGRKLGKHRGYWF 243
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+VV KDV+ NV++VSR + + FR+ +++ P
Sbjct: 244 HTIGQRKGLGLGGGPWFVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDNPWKGA 303
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+E + K+RH P F L E E +V E QG+A GQF Y
Sbjct: 304 QEEVEVTFKIRHTPEFVKGRLQKE-----AEGYRIVS-EEKLQGIAPGQFGVVYDADARL 357
Query: 374 CIGSGVI 380
C+GSG I
Sbjct: 358 CVGSGEI 364
>gi|423305874|ref|ZP_17283873.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides uniformis
CL03T00C23]
gi|423309584|ref|ZP_17287574.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides uniformis
CL03T12C37]
gi|392680474|gb|EIY73844.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides uniformis
CL03T00C23]
gi|392684178|gb|EIY77507.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides uniformis
CL03T12C37]
Length = 354
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 219/367 (59%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +AVLLSGGVDSSV + LL G+ + FY+KI ++D + + +C EEDM+ A A+
Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIG-RDDAD--YMDCSAEEDMEMASAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW V +Y I++ R G TPNPDV+CN IKFG F + +FD
Sbjct: 58 RRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFGCFEQRVGK-DFDI 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA V + L + D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYATTVLRDG-----KTWLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKNEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + LP+ R+DSQGICFLGKI +++FV R +GE EG I+E ETG LGKH G+WF
Sbjct: 172 RDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLGEREGDIVELETGRKLGKHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+VV KDV+ NV++VSR + + FR+ +++ P
Sbjct: 232 HTIGQRKGLGLGGGPWFVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDNPWKGA 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+E + K+RH P F L E E +V E QG+A GQF Y
Sbjct: 292 QEEVEVTFKIRHTPEFVKGRLQKE-----AEGYRIVS-EEKLQGIAPGQFGVVYDADARL 345
Query: 374 CIGSGVI 380
C+GSG I
Sbjct: 346 CVGSGEI 352
>gi|160888906|ref|ZP_02069909.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492]
gi|317479366|ref|ZP_07938500.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
gi|156861805|gb|EDO55236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides uniformis ATCC 8492]
gi|316904440|gb|EFV26260.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
Length = 354
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 219/367 (59%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +AVLLSGGVDSSV + LL G+ + FY+KI ++D + + +C EEDM+ A A+
Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIG-RDDAD--YMDCSAEEDMEMASAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW V +Y I++ R G TPNPDV+CN IKFG F + +FD
Sbjct: 58 RRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFGCFEQRVGK-DFDV 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA V + L + D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYATTVLRDG-----KTWLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKNEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + LP+ R+DSQGICFLGKI +++FV R +GE EG I+E ETG LGKH G+WF
Sbjct: 172 RDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLGEREGDIVELETGRKLGKHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+VV KDV+ NV++VSR + + FR+ +++ P
Sbjct: 232 HTIGQRKGLGLGGGPWFVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDNPWKGA 291
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+E + K+RH P F L E E +V E QG+A GQF Y
Sbjct: 292 QEEVEVTFKIRHTPEFVKGRLQKE-----AEGYRIVS-EEKLQGIAPGQFGVVYDADARL 345
Query: 374 CIGSGVI 380
C+GSG I
Sbjct: 346 CVGSGEI 352
>gi|218264372|ref|ZP_03478229.1| hypothetical protein PRABACTJOHN_03925 [Parabacteroides johnsonii
DSM 18315]
gi|218222070|gb|EEC94720.1| hypothetical protein PRABACTJOHN_03925 [Parabacteroides johnsonii
DSM 18315]
Length = 358
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/369 (39%), Positives = 223/369 (60%), Gaps = 19/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A L+SGGVDSSV + L AG+ T FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMED--KDGYIDCPAEEDIEITSYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ E+V L DEYW VVSY I+ + G TPNPD++CN IKFG F + +FD
Sbjct: 59 KKYGCRFEIVSLHDEYWDRVVSYTIDSVKRGLTPNPDMMCNKYIKFGCFEEKWGK-DFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA L +KD VKDQT FL +++ Q+++L+FP+G + K EV
Sbjct: 118 IATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q LP+ RKDSQGICFLGKI +++F+ R++G+ G I+E ETG LGKH G+WF
Sbjct: 173 RAIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRTGKIVELETGKVLGKHNGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+V++KD+K NV++VS Y + ++ + +++ P
Sbjct: 233 HTIGQRKGLGLSGGPWFVIKKDIKRNVIYVSNGYDPETQYGKIINMHGFDFITEDPWGEF 292
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
E+ + K+RH P F + I + D + ++ QG+A GQ+ Y
Sbjct: 293 EDEKEITFKIRHTPDFTHGR--IRRIGD----LYRIESDNKIQGIAPGQYGVVYDKDHRL 346
Query: 374 CIGSGVILE 382
C+GSG+I++
Sbjct: 347 CLGSGMIID 355
>gi|154491735|ref|ZP_02031361.1| hypothetical protein PARMER_01351 [Parabacteroides merdae ATCC
43184]
gi|154087976|gb|EDN87021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Parabacteroides merdae ATCC 43184]
Length = 358
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 19/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A L+SGGVDSSV + L AG+ T FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMED--KDGYIDCPAEEDIEITSYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ E+V L DEYW VVSY I+ + G TPNPD++CN IKFG F + +FD
Sbjct: 59 KKYGCRFEIVSLHDEYWDRVVSYTIDSVKRGLTPNPDMMCNKYIKFGCFEEKWGK-DFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA L +KD VKDQT FL +++ Q+++L+FP+G + K EV
Sbjct: 118 IATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q LP+ RKDSQGICFLGKI +++F+ R++G+ G I+E ETG LGKH G+WF
Sbjct: 173 RAIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRTGKIVELETGKVLGKHNGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD+K N+++VS Y + ++ + +++ P E
Sbjct: 233 HTIGQRKGLGLSGGPWFVIKKDIKRNIIYVSNGYDPETQYGKIINMHGFDFITEDPWGEF 292
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F + I + D + ++ QG+A GQ+ Y
Sbjct: 293 ADEKEITFKIRHTPDFTHGR--IRRIGD----LYRIESDNKIQGIAPGQYGVVYDKDHRL 346
Query: 374 CIGSGVILE 382
C+GSG+I++
Sbjct: 347 CLGSGMIID 355
>gi|423348475|ref|ZP_17326158.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides merdae
CL03T12C32]
gi|409213953|gb|EKN06965.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides merdae
CL03T12C32]
Length = 358
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 223/369 (60%), Gaps = 19/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A L+SGGVDSSV + L AG+ T FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMED--KDGYIDCPAEEDIEITSYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ E+V L DEYW VVSY I+ + G TPNPD++CN IKFG F + +FD
Sbjct: 59 KKYGCRFEIVSLHDEYWDRVVSYTIDSVKRGLTPNPDMMCNKYIKFGCFEEKWGK-DFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA L +KD VKDQT FL +++ Q+++L+FP+G + K EV
Sbjct: 118 IATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q LP+ RKDSQGICFLGKI +++F+ R++G+ G I+E ETG LGKH G+WF
Sbjct: 173 RAIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRTGKIVELETGKVLGKHNGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+V++KD+K N+++VS Y + ++ + +++ P
Sbjct: 233 HTIGQRKGLGLSGGPWFVIKKDIKRNIIYVSNGYDPETQYGKIINMHGFDFITEDPWGEF 292
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
E+ + K+RH P F + I + D + ++ QG+A GQ+ Y
Sbjct: 293 EDEKEITFKIRHTPDFTHGR--IRRIGD----LYRIESDNKIQGIAPGQYGVVYDKDHRL 346
Query: 374 CIGSGVILE 382
C+GSG+I++
Sbjct: 347 CLGSGMIID 355
>gi|255012392|ref|ZP_05284518.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. 2_1_7]
gi|262382361|ref|ZP_06075498.1| tRNA methyl transferase [Bacteroides sp. 2_1_33B]
gi|298374740|ref|ZP_06984698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 3_1_19]
gi|301308423|ref|ZP_07214377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 20_3]
gi|410104025|ref|ZP_11298942.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides sp. D25]
gi|423340558|ref|ZP_17318296.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides distasonis
CL09T03C24]
gi|262295239|gb|EEY83170.1| tRNA methyl transferase [Bacteroides sp. 2_1_33B]
gi|298269108|gb|EFI10763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 3_1_19]
gi|300833893|gb|EFK64509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 20_3]
gi|409227316|gb|EKN20215.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides distasonis
CL09T03C24]
gi|409235283|gb|EKN28102.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides sp. D25]
Length = 358
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 223/369 (60%), Gaps = 19/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A L+SGGVDSSV + L AG+ T FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMED--KDGYIDCPAEEDIEITSYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ E+V L DEYW VVSY IE + G TPNPD++CN IKFG F + +FD
Sbjct: 59 RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFGCFEEKWGK-DFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA L +KD VKDQT FL +++ Q+++L+FP+G + K EV
Sbjct: 118 IATGHYATTTEIDG-----KIWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R++G+ G I+E ETG LGKH G+WF
Sbjct: 173 RAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRPGKIVELETGKVLGKHNGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD+K N+++VS Y + ++ + +++ P E
Sbjct: 233 HTIGQRKGLGLSGGPWFVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITEDPWGEF 292
Query: 319 ---SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ K+RH P F + I + D + V+ E QG+A GQ++ Y
Sbjct: 293 EGEKEITFKIRHTPEF--THGYIRRIGD----LYRVESDEKIQGIAPGQYSVIYDKDHHL 346
Query: 374 CIGSGVILE 382
C+GSG+I++
Sbjct: 347 CLGSGMIID 355
>gi|256839194|ref|ZP_05544704.1| tRNA methyl transferase [Parabacteroides sp. D13]
gi|256740113|gb|EEU53437.1| tRNA methyl transferase [Parabacteroides sp. D13]
Length = 358
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 147/369 (39%), Positives = 223/369 (60%), Gaps = 19/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A L+SGGVDSSV + L AG+ T FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMED--KDGYIDCPAEEDIEITSYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ E+V L DEYW VVSY IE + G TPNPD++CN IKFG F + +FD
Sbjct: 59 RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFGCFEEKWGK-DFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA L +KD VKDQT FL +++ Q+++L+FP+G + K EV
Sbjct: 118 IATGHYATTTEIDG-----KIWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R++G+ G I+E ETG LGKH G+WF
Sbjct: 173 RAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRPGKIVELETGKVLGKHNGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD+K N+++VS Y + ++ + +++ P E
Sbjct: 233 HTIGQRKGLGLSGGPWFVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITEDPWGEF 292
Query: 319 ---SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ K+RH P F + + + D + V+ E QG+A GQ++ Y
Sbjct: 293 EGEKEITFKIRHTPEF--THGYVRRIGD----LYRVESDEKIQGIAPGQYSVIYDKDHHL 346
Query: 374 CIGSGVILE 382
C+GSG+I++
Sbjct: 347 CLGSGMIID 355
>gi|423341287|ref|ZP_17319002.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides johnsonii
CL02T12C29]
gi|409221295|gb|EKN14245.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides johnsonii
CL02T12C29]
Length = 358
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 222/369 (60%), Gaps = 19/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A L+SGGVDSSV + L AG+ T FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMED--KDGYIDCPAEEDIEITSYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ E+V L DEYW VVSY I+ + G TPNPD++CN IKFG F + +FD
Sbjct: 59 KKYGCRFEIVSLHDEYWDRVVSYTIDSVKRGLTPNPDMMCNKYIKFGCFEEKWGK-DFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA L +KD VKDQT FL +++ Q+++L+FP+G + K EV
Sbjct: 118 IATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q LP+ RKDSQGICFLGKI +++F+ R++G+ G I+E ETG LGKH G+WF
Sbjct: 173 RAIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRTGKIVELETGKVLGKHNGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---P 315
+TIGQR+GL L GGPW+V++KD+K N+++VS Y + + + +++ P
Sbjct: 233 HTIGQRKGLGLSGGPWFVIKKDIKRNIIYVSNGYDPETQYGKTINMHGFDFITEDPWGEF 292
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
E+ + K+RH P F + I + D + ++ QG+A GQ+ Y
Sbjct: 293 EDEKEITFKIRHTPDFTHGR--IRRIGD----LYRIESDNKIQGIAPGQYGVVYDKDHRL 346
Query: 374 CIGSGVILE 382
C+GSG+I++
Sbjct: 347 CLGSGMIID 355
>gi|423724199|ref|ZP_17698344.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides merdae
CL09T00C40]
gi|409240067|gb|EKN32849.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides merdae
CL09T00C40]
Length = 358
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 223/369 (60%), Gaps = 19/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A L+SGGVDSSV + L AG+ T FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MEIAALVSGGVDSSVVVYQLKEAGYDPTIFYIRIGMED--KDGYIDCPAEEDIEITSYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ E+V L DEYW VVSY I+ + G TPNPD++CN IKFG F + +FD
Sbjct: 59 KKYGCRFEIVSLHDEYWDRVVSYTIDSVKRGLTPNPDMMCNKYIKFGCFEEKWGK-DFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA L +KD VKDQT FL +++ Q+++L+FP+G + K EV
Sbjct: 118 IATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q LP+ RKDSQGICFLGKI +++F+ R++G+ G I+E ETG LGKH G+WF
Sbjct: 173 RAIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRTGKIVELETGKVLGKHNGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD+K N+++VS Y + ++ + +++ P +
Sbjct: 233 HTIGQRKGLGLSGGPWFVIKKDIKRNIIYVSNGYDPETQYGKIINMHGFDFITEDPWGQF 292
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F + I + D + ++ QG+A GQ+ Y
Sbjct: 293 ADEKEITFKIRHTPDFTHGR--IRRIGD----LYRIESDNKIQGIAPGQYGVVYDKDHRL 346
Query: 374 CIGSGVILE 382
C+GSG+I++
Sbjct: 347 CLGSGMIID 355
>gi|303236987|ref|ZP_07323562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella disiens FB035-09AN]
gi|302482852|gb|EFL45872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella disiens FB035-09AN]
Length = 376
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/377 (42%), Positives = 219/377 (58%), Gaps = 22/377 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + G + FY++I +E E W +C EED++ A A
Sbjct: 7 KDKRIAVLLSGGVDSSVVVYEFARLGLTPDCFYIRIGPEEKEE--W-DCNSEEDVEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+V+ EYW V Y +++ R G TPNPDV+CN IKFGAF + ++
Sbjct: 64 VARRFGCTLKVIDCHKEYWSQVTKYTMDKVRAGFTPNPDVMCNRMIKFGAFHEKCGK-DY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QLK+ IFP+G K
Sbjct: 123 DLIATGHYAQTKWIEGKK-----WLCTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 178 EVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQVGDVIELETGKKIGQHKGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL GGPW+VV+KDV NNV+ VS Y ++ F+V L WL+ P
Sbjct: 238 WFHTIGQRKGLGFGGGPWFVVKKDVANNVLLVSHGYDPQTAYKQEFKVHDLHWLTESPKN 297
Query: 317 EISR----------LQCKVRHGPGFYNCNLMIEHVEDGG-ENIAVVQLSEDDQGLAAGQF 365
E+ ++ K+RH P F+ L + VE+GG E A+V E G+A GQF
Sbjct: 298 EVVENSEKPNNWIPIRFKIRHTPEFHKGYLEMISVEEGGKETEAMVHSEEKIHGVAPGQF 357
Query: 366 AAFY--QGTRCIGSGVI 380
Y + RC GS I
Sbjct: 358 CVIYDKEHNRCFGSAEI 374
>gi|404486571|ref|ZP_11021761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Barnesiella intestinihominis YIT 11860]
gi|404336389|gb|EJZ62850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Barnesiella intestinihominis YIT 11860]
Length = 353
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/367 (41%), Positives = 212/367 (57%), Gaps = 21/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ VAVLLSGGVDS+V + L G T FY++I D +C EED++ +
Sbjct: 1 MNVAVLLSGGVDSAVVVHRLKEQGIDPTLFYIRIGMDND----EGDCSAEEDIEMCTYIA 56
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ +P EVV L EYW +V+ Y + + G TPNPD++CN IKFG F + FD
Sbjct: 57 RKYGLPFEVVSLHREYWDHVMEYALRTVKLGLTPNPDMMCNKMIKFG-FFEERWGHAFDK 115
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + L ++DK KDQT FL+ + Q+ L+FP+G + K+EV
Sbjct: 116 TATGHYATTTERNG-----KIYLSTARDKKKDQTDFLAQIDSVQVSHLLFPIGDLLKQEV 170
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A LPN R+DSQGICFLG I ++ F+ RH+GE +G I+E ETG LG H G+WF
Sbjct: 171 REMAVSAKLPNASRRDSQGICFLGNIDYNAFIRRHLGERQGAIVELETGKILGFHKGYWF 230
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPWYVV KDV N +FVS Y + + ++ ++ +++ P E+
Sbjct: 231 HTIGQRKGLGLSGGPWYVVAKDVDTNTIFVSNGYGTEKQYGKVLKLAEFHFITDDPWGEM 290
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ K RH P F + L+ E G++ ++ E QG+A GQFA Y R
Sbjct: 291 ESPVEITFKNRHTPDFTSGLLIKE-----GKSYSISS-KEPVQGIAPGQFAVVYDKERHI 344
Query: 374 CIGSGVI 380
C+GSGVI
Sbjct: 345 CVGSGVI 351
>gi|188994230|ref|YP_001928482.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis ATCC
33277]
gi|229486420|sp|B2RHP0.1|MNMA_PORG3 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|188593910|dbj|BAG32885.1| putative tRNA 5-methylaminomethyl-2-thiouridylate
5-methyltransferase [Porphyromonas gingivalis ATCC
33277]
Length = 361
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 220/371 (59%), Gaps = 23/371 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ VA L+SGGVDSSV + L G+ FY++I ++ E+ + +CP EED++ +
Sbjct: 1 MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRIGMED--EDGYIDCPAEEDIELTTLIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ P EVV L EYW+ VVSY +E R G TPNPD++CN IKFG F + +FD
Sbjct: 59 RRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFGCFEERWG-YQFDR 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA + D + L +KD VKDQT FL+ ++ AQ+ +L+FP+G + K EV
Sbjct: 118 IATGHYA-----TTDLLNGKTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R++G+ EG I+E ETG +G+H G+WF
Sbjct: 173 RAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGKKEGRIIELETGKVIGRHQGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---- 314
+TIGQR+GL L GGPW+VV+KD+K N++ VSR Y + + + + +++
Sbjct: 233 HTIGQRKGLGLSGGPWFVVKKDIKRNIILVSRGYDPDTQYGKTIEMETFDFITEDAYEAG 292
Query: 315 ---PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
E+ + + K+RH P F L GE ++ E QG+A GQ+ Y
Sbjct: 293 YWNREDATPVTFKIRHTPEFTRGLLY------KGEKGYRLESEERIQGIAPGQYCVIYDE 346
Query: 372 TR--CIGSGVI 380
C GSG+I
Sbjct: 347 DHHLCYGSGMI 357
>gi|224026934|ref|ZP_03645300.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM
18228]
gi|224020170|gb|EEF78168.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM
18228]
Length = 385
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 162/373 (43%), Positives = 225/373 (60%), Gaps = 19/373 (5%)
Query: 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDM 71
++P + + +A L+SGGVDS+VA+ LL G+ FY++I D C EED+
Sbjct: 23 TLPQKYFMNLAALISGGVDSAVAVHLLCEQGYKPDLFYIRIGMDTDD---GLSCTAEEDI 79
Query: 72 KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI 131
+ A A + + LEVV L EYW VV+Y I++ R G TPNPDV+CN IKFG F +
Sbjct: 80 ELATATARKYGLKLEVVDLQQEYWDRVVAYTIDKVRQGFTPNPDVMCNKLIKFGCFEEK- 138
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ +D +A+GHYA S+ ++E K L +KD VKDQT FL+ + Q+ RL+FPLG
Sbjct: 139 AGHAYDRIATGHYA----STCEREGK-VWLATAKDPVKDQTDFLAQIDYLQVSRLLFPLG 193
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K+EVR+ A LP+ RKDSQGICFLGKI +++F+ R +GE G I+E E+G +G
Sbjct: 194 GLMKQEVRETALAARLPSARRKDSQGICFLGKINYNDFIRRFLGERPGAIVELESGREIG 253
Query: 252 KHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
H GFWF+TIGQR+GL L GGPW+VV+KD + N++FVSR Y + + R FR+ +++
Sbjct: 254 THKGFWFHTIGQRKGLGLSGGPWFVVDKDPEKNLLFVSRGYDTVHQYGRKFRLTDFHFIT 313
Query: 312 GLP-PEEISRLQC-KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
P PE + C K+RH F +I G E V+ QG+A GQF Y
Sbjct: 314 ENPWPEAGEQEICFKIRHTDQFLPG--VIRPAGTGYE----VESPHLIQGIAPGQFGVIY 367
Query: 370 --QGTRCIGSGVI 380
+ CIGSG I
Sbjct: 368 DREARLCIGSGEI 380
>gi|261880130|ref|ZP_06006557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bergensis DSM 17361]
gi|270333185|gb|EFA43971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bergensis DSM 17361]
Length = 384
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 164/386 (42%), Positives = 222/386 (57%), Gaps = 32/386 (8%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + L S G FY++I +E E W +C EEDM+ A A
Sbjct: 7 KDKRIAVLLSGGVDSSVVVYELASHGLHPDCFYIRIGPEEKEE--W-DCNSEEDMEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+VV EYW V Y +E+ R G TPNPDV+CN IKFGAF D + ++
Sbjct: 64 VAKRFGCKLQVVDCHQEYWSQVTRYTMEKVRSGFTPNPDVMCNRLIKFGAF-DEKAGHDY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QLK+ IFP+G K
Sbjct: 123 DLIATGHYAQTEWIDGRK-----WLTTSPDPVKDQTDFLAQIEGWQLKKAIFPIGHYEKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG I ++E+V R++GE G I+E ETG +G+H G
Sbjct: 178 EVREIAEREHLINARRKDSQGICFLGNIDYNEYVRRYLGEQPGDIVELETGTKIGEHSGH 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS--GLP 314
WF+TIGQR+GL L GGPW+V++KDV++NV++VS Y ++ F++ L WL+ P
Sbjct: 238 WFHTIGQRKGLGLSGGPWFVIKKDVEHNVLYVSHGYDPETAYKKDFKIHDLHWLTEEPTP 297
Query: 315 PEEISR------------LQCKVRHGPGFY------NCNLMIEHVEDGGENIAVVQLSED 356
P +S + K+RH P ++ N +H E G+ + L +
Sbjct: 298 PHHLSEASESQKPGSYIPITFKIRHTPEYHPGYLDLNAASSSDHTELTGDTATIHSLDK- 356
Query: 357 DQGLAAGQFAAFY--QGTRCIGSGVI 380
G+A GQF Y Q RC GSG I
Sbjct: 357 IHGVAPGQFCVIYDEQHHRCFGSGEI 382
>gi|359404283|ref|ZP_09197132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella stercorea DSM 18206]
gi|357560479|gb|EHJ41864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella stercorea DSM 18206]
Length = 368
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 217/366 (59%), Gaps = 18/366 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++AVLLSGGVDSSV + L G FY+KI +E E W +C EED++ A AV
Sbjct: 14 RIAVLLSGGVDSSVVVYELAQRGLHPDCFYIKIGPEEQEE--W-DCTSEEDLEMATAVAR 70
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ LEVV EYW V Y +++ R G TPNPDV+CN IKFGAF + E+D +
Sbjct: 71 RFGCKLEVVDCHREYWDQVTRYTMDKVRAGFTPNPDVMCNRLIKFGAFHEK-RGHEYDLI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +++ L S D VKDQT FL+ + QLK+ +FP+G K EVR
Sbjct: 130 ATGHYAQTEIDEQGRKW----LVTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYQKGEVR 185
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L N RKDSQGICFLGKI +++++ + +GE G +LE ETG +GKH G WF+
Sbjct: 186 EIAEREHLINAKRKDSQGICFLGKINYNDYIRKFLGEQPGEVLELETGKLIGKHRGLWFH 245
Query: 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---PE 316
TIGQR GL GGPWYVV+KDV NNV++VS+ + ++ F + +L+ P P
Sbjct: 246 TIGQRHGLGFGGGPWYVVKKDVANNVLYVSKGFEPRTAYKKDFPIHDFHFLTLDPWGEPG 305
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+R++ K+RH P ++ L E G+ +V E QG+A GQF Y + RC
Sbjct: 306 TSARVRFKIRHTPEYHTAVL-----ERTGKGEFIVHADELIQGVAPGQFCVVYDEEHHRC 360
Query: 375 IGSGVI 380
GSG I
Sbjct: 361 YGSGEI 366
>gi|410098401|ref|ZP_11293379.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides goldsteinii
CL02T12C30]
gi|409222275|gb|EKN15220.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides goldsteinii
CL02T12C30]
Length = 358
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 222/369 (60%), Gaps = 19/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A L+SGGVDSSV + L AG+ T FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMED--KDGYIDCPAEEDIEITSYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ +EVV L DEYW VVSY I+ + G TPNPD++CN IKFG F + +FD
Sbjct: 59 RKYGCRMEVVSLHDEYWDKVVSYTIDSVKRGLTPNPDMMCNKFIKFGCFEEKWGK-DFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA L +KD VKDQT FL +++ Q+++L+FP+G + K EV
Sbjct: 118 IATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKAEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + LP+ RKDSQGICFLGKI +++F+ R++G+ G I+E ETG LGKH G+WF
Sbjct: 173 RAIAAEQKLPSAMRKDSQGICFLGKINYNDFIERYLGKRVGKIVELETGKVLGKHNGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD+K N+++VS Y + + + +++ P E
Sbjct: 233 HTIGQRKGLGLSGGPWFVIKKDIKRNIIYVSNGYDPETQYGKTINLHGFDFITEDPWGEF 292
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F I + D + ++ QG+A GQ+ Y
Sbjct: 293 TDEKEITFKIRHTPDFTPGR--IRRIGD----LYRIESENKIQGIAPGQYGVVYDKDHHL 346
Query: 374 CIGSGVILE 382
C+GSG+I++
Sbjct: 347 CLGSGMIID 355
>gi|334146356|ref|YP_004509283.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis TDC60]
gi|333803510|dbj|BAK24717.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis TDC60]
Length = 361
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 220/371 (59%), Gaps = 23/371 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ VA L+SGGVDSSV + L G+ FY++I ++ E+ + +CP EED++ +
Sbjct: 1 MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRIGMED--EDGYIDCPAEEDIELTTLIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ P EVV L EYW+ VVSY +E R G TPNPD++CN IKFG F + +FD
Sbjct: 59 RRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFGCFEERWG-YQFDR 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA + D + L +KD VKDQT FL+ ++ AQ+ +L+FP+G + K EV
Sbjct: 118 IATGHYA-----TTDLLNGKTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R++G+ EG I+E ETG +G+H G+WF
Sbjct: 173 RAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGKKEGRIIELETGKVIGRHQGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---- 314
+TIGQR+GL L GGPW+VV+KD+K N++ VSR Y + + + + +++
Sbjct: 233 HTIGQRKGLGLSGGPWFVVKKDIKRNIILVSRGYDPDTQYGKTIEMETFDFITEDAYEAG 292
Query: 315 ---PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
E+ + + K+RH P F L GE ++ E QG+A GQ+ Y
Sbjct: 293 YWNREDATPVIFKIRHTPEFTRGLLY------KGEKGYRLESEERIQGIAPGQYCVIYDE 346
Query: 372 TR--CIGSGVI 380
C GSG+I
Sbjct: 347 DHHFCYGSGMI 357
>gi|34540110|ref|NP_904589.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis W83]
gi|419970915|ref|ZP_14486385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas gingivalis W50]
gi|81416613|sp|Q7MAW9.1|MNMA_PORGI RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|34396421|gb|AAQ65488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas gingivalis W83]
gi|392609636|gb|EIW92440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas gingivalis W50]
Length = 361
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 220/371 (59%), Gaps = 23/371 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ VA L+SGGVDSSV + L G+ FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRIGMED--KDGYIDCPAEEDIELTTLIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ P EVV L EYW+ VVSY +E R G TPNPD++CN IKFG F + +FD
Sbjct: 59 RRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFGCFEERWG-YQFDR 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA + D + L +KD VKDQT FL+ ++ AQ+ +L+FP+G + K EV
Sbjct: 118 IATGHYA-----TTDLLNGKTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R++G+ EG I+E ETG +G+H G+WF
Sbjct: 173 RAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGKKEGRIIELETGKVIGRHQGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---- 314
+TIGQR+GL L GGPW+VV+KD+K N++ VSR Y + + + + +++
Sbjct: 233 HTIGQRKGLGLSGGPWFVVKKDIKRNIILVSRGYDPDAQYGKTIEMETFDFITEDAYEAG 292
Query: 315 ---PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
E+ + + K+RH P F L GE ++ E QG+A GQ+ Y
Sbjct: 293 YWNREDATPVTFKIRHTPEFTRGLLY------KGEKGYRLESEERIQGIAPGQYCVIYDE 346
Query: 372 TR--CIGSGVI 380
C GSG+I
Sbjct: 347 DHHLCYGSGMI 357
>gi|429726426|ref|ZP_19261224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 473 str. F0040]
gi|429146658|gb|EKX89707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 473 str. F0040]
Length = 370
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 160/379 (42%), Positives = 224/379 (59%), Gaps = 28/379 (7%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A+LLSGGVDS+VA LL G FY+KI +D + C EED++ +A+
Sbjct: 1 MNIALLLSGGVDSAVATHLLVERGLRPDLFYIKIGMDDDED---LTCTAEEDIELCQAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ +PLEV+ L EYW+ VVSY ++ + G TPNPDV+CN IKFGAF + I +D
Sbjct: 58 RRYGLPLEVIDLQKEYWERVVSYTMDHVKQGLTPNPDVMCNRLIKFGAFEEKIGHA-YDR 116
Query: 139 VASGHYAKVVHS-----------SADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI 187
+ +GHYA+VV S D S L + D +KDQT FL+ L Q+ +++
Sbjct: 117 ICTGHYARVVRDDEVFADPRSGESIDLSSSASWLGTAPDPIKDQTDFLAQLDAHQVGKIM 176
Query: 188 FPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETG 247
PLG + KE+VR+ A L RKDSQGICFLGKI +++FV R +GE G ++E ETG
Sbjct: 177 LPLGHLRKEQVRQIALDNKLAPARRKDSQGICFLGKINYNDFVRRFLGERVGDVIELETG 236
Query: 248 DFLGKHWGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
+G+H G+WF+TIGQR+GL L GGPW+VV+KD++ N+++VS Y + + R F +
Sbjct: 237 KKVGEHRGYWFHTIGQRKGLGLGGGPWFVVKKDLEQNILYVSHGYDNLLQYGRSFNIAGF 296
Query: 308 KWLSGLP-PEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD--QGLAAG 363
+L+G P P S + KVRH + ++ E+GG +I DD QG+A G
Sbjct: 297 HFLTGDPWPSSGSIDVTFKVRHTDRWRTG--VLTRTEEGGFHI-----DGDDPIQGIAPG 349
Query: 364 QFAAFY--QGTRCIGSGVI 380
QF Y G CIGSG I
Sbjct: 350 QFGVVYSRDGRICIGSGEI 368
>gi|383811309|ref|ZP_09966778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 306 str. F0472]
gi|383356059|gb|EID33574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 306 str. F0472]
Length = 360
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/366 (43%), Positives = 215/366 (58%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + G FY+KI +E E W +C EED++ A A
Sbjct: 7 KDKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKIGPEEKEE--W-DCNSEEDLEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+V+ EYW V SY +E+ + G TPNPDV+CN IKFGAF DA ++
Sbjct: 64 VAHRYGCKLQVIDCHKEYWDQVTSYTMEKVKAGFTPNPDVMCNRLIKFGAF-DAKMGHDY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QLK+ IFP+G +K
Sbjct: 123 DLIATGHYAQTEWIDGRK-----WLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYAKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A Q L N RKDSQGICFLG I ++E+V R++GE G I+E ETG +G+H G
Sbjct: 178 EVREIAEQEHLINARRKDSQGICFLGNIDYNEYVRRYLGEQMGDIIELETGKKIGEHRGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL L GGPW+VV+KDV N+++VS Y ++ F + +L+ E
Sbjct: 238 WFHTIGQRKGLGLGGGPWFVVKKDVAQNILYVSHGYDPATAYKKDFPLHDFHFLTEGITE 297
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+++ K+RH P ++ VE E ++ +E G+A GQF Y Q RC
Sbjct: 298 LPAKVTFKIRHTPEYHTAT-----VEQLSEGKCLIHSTESIHGVAPGQFCVIYDEQHHRC 352
Query: 375 IGSGVI 380
GSG I
Sbjct: 353 FGSGEI 358
>gi|260591395|ref|ZP_05856853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella veroralis F0319]
gi|260536761|gb|EEX19378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella veroralis F0319]
Length = 360
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/366 (43%), Positives = 217/366 (59%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + G FY+KI +E E W +C EED++ A A
Sbjct: 7 KDKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKIGPEEKEE--W-DCNSEEDLEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+V+ EYW V SY +E+ + G TPNPDV+CN IKFGAF DA ++
Sbjct: 64 VAHRYGCKLQVIDCHKEYWDQVTSYTMEKVKAGFTPNPDVMCNRLIKFGAF-DAKMGHDY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QLK+ IFP+G +K
Sbjct: 123 DLIATGHYAQTEWIDGRK-----WLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYAKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A Q L N RKDSQGICFLG I ++E+V R++GE G I+E ETG +G+H G
Sbjct: 178 EVREIAEQEHLINARRKDSQGICFLGNIDYNEYVRRYLGEQVGDIIELETGKKIGEHRGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL L GGPW+VV+KDV N+++VS Y ++ F + +L+ E
Sbjct: 238 WFHTIGQRKGLGLGGGPWFVVKKDVAQNILYVSHGYDPATTYKKDFPLHDFHFLTEGIKE 297
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+++ K+RH P ++ +E + DG ++ +E G+A GQF Y Q RC
Sbjct: 298 LPTKVTFKIRHTPEYHTAT--VEQLSDGK---CLIHSTESIHGVAPGQFCVIYDEQHHRC 352
Query: 375 IGSGVI 380
GSG I
Sbjct: 353 FGSGEI 358
>gi|198275614|ref|ZP_03208145.1| hypothetical protein BACPLE_01783 [Bacteroides plebeius DSM 17135]
gi|198271243|gb|EDY95513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides plebeius DSM 17135]
Length = 368
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 214/368 (58%), Gaps = 17/368 (4%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
+K + VA L+SGGVDS+V + LL GH FY+KI D C EED++ A
Sbjct: 10 KKDMNVAALISGGVDSAVVVHLLCEQGHKPDLFYIKIGMDTDDG---LTCTAEEDIELAS 66
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
A + + +V L YW NVV+Y ++ R G TPNPDV+CN IKFG F D +
Sbjct: 67 ATARKYGLSFHIVDLQQAYWDNVVAYTVDRVRRGLTPNPDVMCNKLIKFGCF-DREAGQG 125
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+D +A+GHYA + + L +KD VKDQT FL+ + Q+ RL+FPLG K
Sbjct: 126 YDKIATGHYASTLDIDG-----YTWLATAKDPVKDQTDFLAQIDYLQVSRLMFPLGGFLK 180
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EEVR A + LP+ RKDSQGICFLGKI +++F+ R +GE G ++E ETG +G+H G
Sbjct: 181 EEVRDMAVKASLPSARRKDSQGICFLGKINYNDFIRRFLGERPGPVVELETGKVIGQHRG 240
Query: 256 FWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP- 314
+WF+TIGQR+GL L GGPW+VV+K+V+ N+++VS Y + + F V +++ P
Sbjct: 241 YWFHTIGQRKGLGLGGGPWFVVDKNVEENIIYVSHGYDTEKQFGHFFCVKDFHFITLNPW 300
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGT 372
E+ + + K+RH F + EDG +++ E QG+A GQF Y
Sbjct: 301 KEQETEICFKIRHTDTFQTGK--VRFAEDGTLHVSS---EEPIQGIAPGQFGVIYDKDAR 355
Query: 373 RCIGSGVI 380
CIGSG I
Sbjct: 356 LCIGSGEI 363
>gi|365118136|ref|ZP_09336936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Tannerella sp. 6_1_58FAA_CT1]
gi|363651030|gb|EHL90113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Tannerella sp. 6_1_58FAA_CT1]
Length = 355
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 223/367 (60%), Gaps = 18/367 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A+L SGGVDSSVA+ L AG++ T FY++I ++ +N +C EED++ +
Sbjct: 1 MNIAMLASGGVDSSVAVYQLKEAGYTPTLFYIRIGMEDKDKNL--DCHSEEDIEIVTYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ P+E+V L +EYW+ V+ Y E + G TPNPDV+CN IKFG F + +FD
Sbjct: 59 RKYGCPMEIVSLHNEYWEYVMGYAFETIKRGLTPNPDVMCNKFIKFG-FFEKYWGKDFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA D Y L +KD VKDQT FL+ L+ Q+ +L+FP+G + K+EV
Sbjct: 118 IATGHYADT-RIIDDITY----LATAKDPVKDQTDFLAQLNHVQISKLLFPIGNMMKDEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q +LP+ RKDSQGICFLG I +++F+ ++GE EG I++ E+G +GKH G+WF
Sbjct: 173 RTIALQQNLPSALRKDSQGICFLGNINYNQFIRNYLGEKEGDIIDLESGHIVGKHKGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD + N+++VS + + + +++SG P ++
Sbjct: 233 HTIGQRKGLGLSGGPWFVIKKDPEQNILYVSNGSDPETQYGNILDLSGFQFISGNPLGDL 292
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
S + K RH P F I+ + + NI + + QG+A GQF Y +
Sbjct: 293 SHDTPITFKNRHTPEFTPGT--IQRINN---NIVRITSDKKIQGIAPGQFGVIYSYDKKL 347
Query: 374 CIGSGVI 380
C+ SG+I
Sbjct: 348 CLASGII 354
>gi|300726991|ref|ZP_07060411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bryantii B14]
gi|299775714|gb|EFI72304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bryantii B14]
Length = 361
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 218/366 (59%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K K+AVLLSGGVDSSV + S G FY+KI +E E W +C EED++ A A
Sbjct: 8 KDKKIAVLLSGGVDSSVVVYEFASHGLHPDCFYIKIGPEEQEE--W-DCSSEEDLEMATA 64
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+V+ EYW V Y +++ + G TPNPDV+CN IKFGAF D ++
Sbjct: 65 VAARFGCKLQVIDCHKEYWNQVTKYTMDKVKSGFTPNPDVMCNRLIKFGAF-DEKMGHDY 123
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + Q QLK+ IFP+G K+
Sbjct: 124 DLIATGHYAQTEIIDGKK-----WLVTSPDPVKDQTDFLAQIYQWQLKKAIFPIGHHIKD 178
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
E+R+ A + L N RKDSQGICFLG I ++E+V R++GE +G ++E ETG +G+H G
Sbjct: 179 EIREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEKKGNVIEFETGKKIGEHKGL 238
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL L GGPW+VV+KD++ N+++VS Y ++ F++ +L+ E
Sbjct: 239 WFHTIGQRKGLGLGGGPWFVVKKDIEKNILYVSHGYDPETAYKQDFKIHDFDFLTEGITE 298
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+R+ K+RH P ++ + VE G+ + E G+A GQF Y Q RC
Sbjct: 299 LPARVTFKIRHTPEYHPAS-----VEVNGDGTFTIHSDEKIHGVAPGQFCVIYDEQHHRC 353
Query: 375 IGSGVI 380
GSG I
Sbjct: 354 YGSGEI 359
>gi|282878172|ref|ZP_06286968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccalis ATCC 35310]
gi|281299590|gb|EFA91963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccalis ATCC 35310]
Length = 360
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 215/366 (58%), Gaps = 18/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + L G FY+KI +E E W +C EED++ A A
Sbjct: 9 KDKRIAVLLSGGVDSSVVVHELAQMGLHPDCFYIKIGPEEAEE--W-DCSSEEDLEMATA 65
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF DA ++
Sbjct: 66 VAAKYGCRLQVVDCHKEYWSEVTKYTMEKVKAGYTPNPDVMCNRLIKFGAF-DAKVGHQY 124
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QLK+ +FP+G K
Sbjct: 125 DLIATGHYAQTEVIDGKK-----WLVTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYQKN 179
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N R+DSQGICFLG+I ++E++ R++GE G ++E ETG +G+H G
Sbjct: 180 EVREIAEREHLVNAKRRDSQGICFLGQIDYNEYLRRYLGEKHGDVIELETGKKIGEHRGL 239
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR GL GGPW+VV+KDV+ NV++VSR Y + F+V +L+ P
Sbjct: 240 WFHTIGQRHGLGFGGGPWFVVKKDVQANVLYVSRGYDPKTAYKSDFKVHDFHFLT--EPL 297
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
++ + K+RH P ++ +E E +V ++ G+A GQF Y Q RC
Sbjct: 298 DMEHITFKIRHTPEYHPAT-----IEKTAEGCYIVHAAQPIHGVAPGQFCVVYDEQHHRC 352
Query: 375 IGSGVI 380
IGS I
Sbjct: 353 IGSAEI 358
>gi|433652480|ref|YP_007296334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella dentalis DSM 3688]
gi|433303013|gb|AGB28828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella dentalis DSM 3688]
Length = 360
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 159/368 (43%), Positives = 217/368 (58%), Gaps = 16/368 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + L S G FY+KI +E E W +C EED++ A A
Sbjct: 7 KDKRIAVLLSGGVDSSVVIYELASLGLHPDCFYIKIGPEEQEE--W-DCSSEEDLEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF D +
Sbjct: 64 VAARYGCRLQVVDCHQEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHAY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ D+++ L S D VKDQT FL+ + Q QLK+ IFP+G K
Sbjct: 123 DLIATGHYAQT-EWIDDRKW----LTTSPDPVKDQTDFLAQIYQWQLKKAIFPIGHFEKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG I ++E+V R++GE+ G I+E ETG +G+H G
Sbjct: 178 EVREIAEREHLINARRKDSQGICFLGNIDYNEYVRRYLGELPGDIVEQETGKKIGEHRGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL L GGPW+V+ KDV N ++VS Y D ++ F + +L+ +
Sbjct: 238 WFHTIGQRKGLGLGGGPWFVIRKDVARNTLYVSHGYDPQDAYKQDFPIHGFDFLTEGVSD 297
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+ K+RH P ++ H E GE ++ ++ G+A GQF Y Q +C
Sbjct: 298 LPREVTFKIRHTPEYHPA-----HTERIGEGQYLIHSAKPIHGVAPGQFCVVYDEQHHKC 352
Query: 375 IGSGVILE 382
GSG I E
Sbjct: 353 YGSGEICE 360
>gi|340347579|ref|ZP_08670687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella dentalis DSM 3688]
gi|339609275|gb|EGQ14150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella dentalis DSM 3688]
Length = 398
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 159/368 (43%), Positives = 217/368 (58%), Gaps = 16/368 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + L S G FY+KI +E E W +C EED++ A A
Sbjct: 45 KDKRIAVLLSGGVDSSVVIYELASLGLHPDCFYIKIGPEEQEE--W-DCSSEEDLEMATA 101
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF D +
Sbjct: 102 VAARYGCRLQVVDCHQEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHAY 160
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ D+++ L S D VKDQT FL+ + Q QLK+ IFP+G K
Sbjct: 161 DLIATGHYAQT-EWIDDRKW----LTTSPDPVKDQTDFLAQIYQWQLKKAIFPIGHFEKN 215
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG I ++E+V R++GE+ G I+E ETG +G+H G
Sbjct: 216 EVREIAEREHLINARRKDSQGICFLGNIDYNEYVRRYLGELPGDIVEQETGKKIGEHRGL 275
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL L GGPW+V+ KDV N ++VS Y D ++ F + +L+ +
Sbjct: 276 WFHTIGQRKGLGLGGGPWFVIRKDVARNTLYVSHGYDPQDAYKQDFPIHGFDFLTEGVSD 335
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+ K+RH P ++ H E GE ++ ++ G+A GQF Y Q +C
Sbjct: 336 LPREVTFKIRHTPEYHPA-----HTERIGEGQYLIHSAKPIHGVAPGQFCVVYDEQHHKC 390
Query: 375 IGSGVILE 382
GSG I E
Sbjct: 391 YGSGEICE 398
>gi|340353154|ref|ZP_08675982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella pallens ATCC 700821]
gi|339611350|gb|EGQ16180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella pallens ATCC 700821]
Length = 376
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 158/377 (41%), Positives = 211/377 (55%), Gaps = 22/377 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +AVLLSGGVDSSV + G + FY++I +E E W +C EED++ A A
Sbjct: 7 KNKHIAVLLSGGVDSSVVVYEFARLGLTPDCFYIRIGPEEKEE--W-DCNSEEDVEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + V+ EYW V Y +E+ R G TPNPDV+CN IKFGAF D +
Sbjct: 64 VAQRFGCKFNVIDCHKEYWGQVTKYTMEKVRAGFTPNPDVMCNRLIKFGAF-DEKCGHNY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + + L S D VKDQT FL+ + QL++ +FP+G K
Sbjct: 123 DLIATGHYAQTKWINGKK-----WLCTSPDPVKDQTDFLAQIYDWQLRKALFPIGHYEKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 178 EVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQVGDVVELETGKIIGQHKGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL GGPW+VV+KDV NV+FVS Y ++ FRV L WL+ P
Sbjct: 238 WFHTIGQRKGLGFGGGPWFVVKKDVTTNVLFVSHGYDPETAYKKDFRVHGLHWLTETPCS 297
Query: 317 EISR----------LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD-QGLAAGQF 365
E+ + K+RH P F+ L + + GE + SED G+A GQF
Sbjct: 298 EVGNNNVEATEQISICFKIRHTPEFHKGYLELLSTNNEGEPTEAIVHSEDKIHGVAPGQF 357
Query: 366 AAFY--QGTRCIGSGVI 380
Y RC GS I
Sbjct: 358 CVIYDKDHNRCFGSAEI 374
>gi|323344915|ref|ZP_08085139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oralis ATCC 33269]
gi|323094185|gb|EFZ36762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oralis ATCC 33269]
Length = 359
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 212/366 (57%), Gaps = 18/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
KG K+AVLLSGGVDSSV + L G FY+KI +E + W +C EED++ A
Sbjct: 8 KGKKIAVLLSGGVDSSVVVYELVRLGLLPDCFYIKIGPEE--QEQW-DCSSEEDLEMATV 64
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + LE+V EYW V Y +++ R G TPNPDV+CN IKFGAF D + +
Sbjct: 65 VAARYGCRLEIVDCHKEYWSEVTRYTMDKVRAGFTPNPDVMCNRLIKFGAFDDKVGH-RY 123
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ +FP+G K+
Sbjct: 124 DLIATGHYAQTEMIGGKK-----WLVTSPDPVKDQTDFLAQIYNWQLRKALFPIGHYMKD 178
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A L N RKDSQGICFLGKI +++++ R +GE G ++E ETG +G H G
Sbjct: 179 EVREIAEHEHLINAKRKDSQGICFLGKINYNDYIRRFLGENPGDVIELETGRKIGMHRGL 238
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR GL GGPWY ++KDV NV++VS+ Y ++ F+V +L+ P
Sbjct: 239 WFHTIGQRHGLGFGGGPWYAIKKDVAQNVLYVSKGYEPQTAFQQDFKVHDFHFLT--EPV 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
++ + K+RH P +++ L E E V +E QG+A GQF Y Q RC
Sbjct: 297 DMKHVTFKIRHTPEYHSALL-----EKTAEGAYTVHSTEQIQGVAPGQFCVVYDEQHHRC 351
Query: 375 IGSGVI 380
GSG I
Sbjct: 352 FGSGEI 357
>gi|357061226|ref|ZP_09121985.1| tRNA methyl transferase [Alloprevotella rava F0323]
gi|355374735|gb|EHG22027.1| tRNA methyl transferase [Alloprevotella rava F0323]
Length = 356
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 155/369 (42%), Positives = 218/369 (59%), Gaps = 18/369 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++ A L+SGGVDS+VA+ L+ G + FY+KI + E W +C EED + A V
Sbjct: 1 MRYAGLISGGVDSAVAVHLMKEQGITPDLFYIKIGSGPEGE--W-DCSAEEDWEMASTVA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ L+++ L EYW+ VV YI++ + G TPN DV+CN IKFG F + E+D
Sbjct: 58 RKYGCRLDLIDLQKEYWEYVVGYIVDRLKAGLTPNSDVMCNKYIKFGVFEQRVGH-EYDR 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+ + AD L S D VKDQT FL+ L L++++FP+G + KEEV
Sbjct: 117 VATGHYAQT-ETDADGN---VWLTTSPDPVKDQTDFLAQLDNLGLRKIMFPIGHLLKEEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + L R DSQGICFLGKI+FSE +++GE EG+++E ETG+ +GKH G+WF
Sbjct: 173 RDIAEREHLAPAHRHDSQGICFLGKIRFSELARKYLGEKEGLVVEKETGNIIGKHPGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP--PE 316
+TIGQR+GL GGPWYVV KD++ N+++VS + + R F V +L+ P +
Sbjct: 233 FTIGQRKGLGFGGGPWYVVGKDIRRNIIYVSHGFQTQAAYGREFFVSQPNFLTLNPFAAD 292
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+ KVRH P F L++ + +ED QG+A GQFA Y Q RC
Sbjct: 293 GEYDITFKVRHTPEFTPGRLLVS------RGRYKIVSAEDVQGIAPGQFACLYDAQHHRC 346
Query: 375 IGSGVILES 383
GSG I ++
Sbjct: 347 YGSGEIAQA 355
>gi|156088637|ref|XP_001611725.1| tRNA methyl transferase family protein [Babesia bovis]
gi|154798979|gb|EDO08157.1| tRNA methyl transferase family protein [Babesia bovis]
Length = 665
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 215/380 (56%), Gaps = 24/380 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+VA L+SGGVDS+VAL LL S G AFYLK+W E+ + +C W D+++A V
Sbjct: 288 RVACLVSGGVDSAVALWLLKSRGFDIEAFYLKVWSVENGD--LGDCQWSADLEHAMGVTK 345
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++VPL VV D Y + V+ + G TPNPDV CN IKFGAF+D F ++
Sbjct: 346 LLNVPLHVVPFQDVYHQRVLDPFVAGASLGETPNPDVCCNEFIKFGAFLDYAVRWGFSHI 405
Query: 140 ASGHYAKVVHSSA-DQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
ASGHYA ++ + + L L +D KDQTYFLS LSQ+QL+R++FPL + K EV
Sbjct: 406 ASGHYASIIEDLVPGTSTRIARLRLCRDLRKDQTYFLSRLSQSQLRRVMFPLSQLYKNEV 465
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A N DRK+S G+CFLGK+ F++ +GE+ G I++ +TG+ +G+H G +
Sbjct: 466 RTIARTLGFSNYDRKESMGLCFLGKVDVKSFLSHRLGEVPGPIVDHDTGNCIGRHHGLFH 525
Query: 259 YTIGQRQGL-------RLPGGPWYVVEKDVKNNVVFVSRNYYSF-----DKKRRLFRVGS 306
+TIGQR+G+ R YVV KD+ N ++VS Y++ RR FR+
Sbjct: 526 FTIGQREGIARYLNSVRDTNQSRYVVAKDIDTNTLYVSTRYHTKCYTEPGSVRRRFRISD 585
Query: 307 LKWLSGLPP-----EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
++W +P + + L KVRH P ++ + ++ A V L + D GLA
Sbjct: 586 IRW--NVPDFKRFITDPNSLSMKVRHSPTLCRGDISFDDLDTASG--ASVHLEKADIGLA 641
Query: 362 AGQFAAFYQGTRCIGSGVIL 381
GQ+A Y G C+G+G I+
Sbjct: 642 TGQYAVIYSGLNCLGAGKIV 661
>gi|288928497|ref|ZP_06422344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 317 str. F0108]
gi|288331331|gb|EFC69915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 317 str. F0108]
Length = 353
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 214/366 (58%), Gaps = 18/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
+G K+AVLLSGGVDSSV + + G FY+KI +E E W +C EED++ A A
Sbjct: 2 QGKKIAVLLSGGVDSSVVVYEFNRLGLHPDCFYIKIGPEETEE--W-DCASEEDLEMATA 58
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + LEVV EYW+ V Y +++ + G TPNPDV+CN IKFGAF + E+
Sbjct: 59 VAKRFGCKLEVVDCHKEYWEQVTRYTMDKVKAGFTPNPDVMCNRLIKFGAFHEK-RGHEY 117
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ +FP+G K
Sbjct: 118 DLIATGHYAQTEWIDGKK-----WLVTSPDPVKDQTDFLAQIYDWQLRKALFPIGHYQKG 172
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLGKI ++E++ R +GE G +LE ET +G H G
Sbjct: 173 EVREIAEREHLINAKRKDSQGICFLGKINYNEYIRRFLGEKPGEVLELETEKKIGMHRGL 232
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR GL GGPWY V+KDV+ NV+FVS+ Y ++ F+V L L+ P
Sbjct: 233 WFHTIGQRHGLGFGGGPWYAVKKDVERNVLFVSKGYEPATAYKKDFKVHHLHQLTA--PL 290
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+ + K+RH P ++ L E + DGG +V E QG+A GQF Y + RC
Sbjct: 291 DGLDVTFKIRHTPEYHRAQL--EPLPDGG---YIVHAEEPMQGVAPGQFCVIYDKEHHRC 345
Query: 375 IGSGVI 380
GS I
Sbjct: 346 FGSAEI 351
>gi|340349805|ref|ZP_08672808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella nigrescens ATCC 33563]
gi|339610008|gb|EGQ14869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella nigrescens ATCC 33563]
Length = 376
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 214/377 (56%), Gaps = 22/377 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + +G + FY++I +E E W +C EED++ A A
Sbjct: 7 KDKRIAVLLSGGVDSSVVVYEFARSGLTPDCFYIRIGPEEKEE--W-DCNSEEDVEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + V+ EYW V Y +++ R G TPNPDV+CN IKFGAF D ++
Sbjct: 64 VARRYGCRFNVIDCHKEYWSQVTKYTMDKVRAGLTPNPDVMCNRIIKFGAF-DEKCGHDY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ IFP+G K
Sbjct: 123 DLIATGHYAQTKWIDGKK-----WLCTSPDPVKDQTDFLAQIYDWQLRKAIFPIGHYEKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 178 EVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQAGDVVELETGRKIGQHKGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP-P 315
WF+TIGQR+GL GGPW+VV+KDV NV+FVS Y ++ F+V L WL+ P P
Sbjct: 238 WFHTIGQRKGLGFGGGPWFVVKKDVAANVLFVSHGYDPETAYKKDFKVHGLHWLTETPRP 297
Query: 316 EEIS---------RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD-QGLAAGQF 365
E S + K+RH P F+ L + D GE + SED G+A GQF
Sbjct: 298 EAGSSDAETYRQISICFKIRHTPEFHKGYLELLPANDDGEPTEAIVHSEDKIHGVAPGQF 357
Query: 366 AAFYQG--TRCIGSGVI 380
Y RC GS I
Sbjct: 358 CVIYDKDHNRCFGSAEI 374
>gi|307564524|ref|ZP_07627065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella amnii CRIS 21A-A]
gi|307346884|gb|EFN92180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella amnii CRIS 21A-A]
Length = 387
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 166/387 (42%), Positives = 218/387 (56%), Gaps = 37/387 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+AVLLSGGVDSSV + L G +Y+KI +E + W +C EED++ A AV
Sbjct: 10 KIAVLLSGGVDSSVVVWELARIGLHPDCYYIKIGPKE--ADQW-DCTSEEDLEMATAVAK 66
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ LEVV EYW V Y +++ R G TPNPDV+CN IKFGAF E+D +
Sbjct: 67 RFGCKLEVVDCHKEYWGEVTKYTMDKVRVGLTPNPDVMCNRLIKFGAFYKK-KGHEYDLI 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ + L S D VKDQT FLS + QL++ IFP+G +K+EVR
Sbjct: 126 ATGHYAQTKWIDGKK-----WLCTSPDAVKDQTDFLSQIYPWQLQKAIFPIGHYAKDEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L N RKDSQGICFLG I ++E+V R++GE +G I+E ETG +G+H G WF+
Sbjct: 181 RIAEREHLINAARKDSQGICFLGNIDYNEYVRRYLGESKGDIIEKETGKKIGEHKGLWFH 240
Query: 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS-------- 311
TIGQR+GL L GGPW+VV KDV+ NV++VS Y +R F+V L WL+
Sbjct: 241 TIGQRKGLGLGGGPWFVVSKDVERNVLYVSHGYDPELAYKRSFKVLGLHWLTPEGLELFE 300
Query: 312 ---------GLPPEEISRL---QCKVRHGP----GFYNCNLMIEHVEDGGENIAVVQLSE 355
L E +RL K+RH P GF E + +GG V+ +
Sbjct: 301 GKDGVGLQEDLSIESHTRLIPITFKIRHTPEYHKGFLEVGSTKEALAEGGS--GVIHSQQ 358
Query: 356 DDQGLAAGQFAAFY--QGTRCIGSGVI 380
G+A GQF Y Q RC GSG I
Sbjct: 359 KIHGVAPGQFCVIYDEQHDRCYGSGEI 385
>gi|402307086|ref|ZP_10826117.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. MSX73]
gi|400379212|gb|EJP32058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. MSX73]
Length = 359
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + L + G FY+KI +E E W +C EED++ A A
Sbjct: 8 KDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKIGPEEQEE--W-DCSSEEDLEMATA 64
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF DA ++
Sbjct: 65 VAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DAKMGYDY 123
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ IFP+G K+
Sbjct: 124 DLIATGHYAQTEWIDGRK-----WLVTSPDPVKDQTDFLAQIYDWQLRKAIFPIGHYMKD 178
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N R+DSQGICFLG+I ++E++ R++GE G ++E ETG +G+H G
Sbjct: 179 EVREIAGREHLVNAKRRDSQGICFLGQINYNEYLRRYLGEQPGDVIELETGKTIGEHRGL 238
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL GGPW+VV+KDV NV++VS Y ++ FR+ L+ P
Sbjct: 239 WFHTIGQRKGLGFGGGPWFVVKKDVGRNVLYVSHGYDPQTAYKQDFRMHDFHVLTA--PI 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+ R+ K+RH P + VE E I V G+A GQF Y Q RC
Sbjct: 297 DSERITFKIRHTPDYLPAT-----VEKTSEGIYTVHADAPIHGVAPGQFCVVYDEQHHRC 351
Query: 375 IGSGVI 380
GSG I
Sbjct: 352 FGSGEI 357
>gi|288924750|ref|ZP_06418687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccae D17]
gi|288338537|gb|EFC76886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccae D17]
Length = 353
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + L + G FY+KI +E E W +C EED++ A A
Sbjct: 2 KDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKIGPEEQEE--W-DCSSEEDLEMATA 58
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF DA ++
Sbjct: 59 VAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DAKMGHDY 117
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ IFP+G K+
Sbjct: 118 DLIATGHYAQTEWIDGRK-----WLVTSPDPVKDQTDFLAQIYDWQLRKAIFPIGHYMKD 172
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N R+DSQGICFLG+I ++E++ R++GE G ++E ETG +G+H G
Sbjct: 173 EVREIAEREHLVNAKRRDSQGICFLGQINYNEYLRRYLGEQPGDVIELETGKTIGEHRGL 232
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL GGPW+VV+KDV NV++VS Y ++ FR+ L+ P
Sbjct: 233 WFHTIGQRKGLGFGGGPWFVVKKDVGRNVLYVSHGYDPQTAYKQDFRMHDFHVLTA--PI 290
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+ R+ K+RH P + VE E I V G+A GQF Y Q RC
Sbjct: 291 DSERVTFKIRHTPDYLPAT-----VEKTSEGIYTVHADAPIHGVAPGQFCVVYDEQHHRC 345
Query: 375 IGSGVI 380
GSG I
Sbjct: 346 FGSGEI 351
>gi|282859182|ref|ZP_06268304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bivia JCVIHMP010]
gi|424900357|ref|ZP_18323899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bivia DSM 20514]
gi|282588001|gb|EFB93184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bivia JCVIHMP010]
gi|388592557|gb|EIM32796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bivia DSM 20514]
Length = 386
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 158/389 (40%), Positives = 220/389 (56%), Gaps = 36/389 (9%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K K+AVLLSGGVDSSV + G +Y+KI +E W +C EED++ A A
Sbjct: 7 KDKKIAVLLSGGVDSSVVVWEFARLGLHPDCYYIKIGPEE--AEAW-DCSSEEDLEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC + + LEV+ EYW V Y +++ + G TPNPDV+CN IKFGAF + E+
Sbjct: 64 VCRRFECKLEVIDCHKEYWGQVTKYTMDKVKAGFTPNPDVMCNRLIKFGAFYEK-KGYEY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ IFP+G K
Sbjct: 123 DLIATGHYAQTKWIDGKK-----WLCTSPDPVKDQTDFLAQIYDWQLQKAIFPIGHYEKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG I ++E+V R++GE G I+E ETG +G+H G
Sbjct: 178 EVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGENAGEIIELETGKKIGEHKGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL L GGPW+V++KDV+ N+++VS Y +R F+V L WL+ P E
Sbjct: 238 WFHTIGQRKGLGLGGGPWFVIKKDVEKNILYVSHGYDPETAYKRKFKVCDLHWLTVSPSE 297
Query: 317 -------------------EISRLQCKVRHGPGFYNCNLMI----EHVEDGGENIAVVQL 353
+ + K+RH P ++ L + H+ +G E A++
Sbjct: 298 LEDSNGIILQNGCCSSFKHTLIPITFKIRHTPEYHQGYLEVLSEEGHLVEGSE--ALIHA 355
Query: 354 SEDDQGLAAGQFAAFY--QGTRCIGSGVI 380
+ G+A GQF Y + RC GSG I
Sbjct: 356 QKKIHGVAPGQFCVIYDEEHERCFGSGEI 384
>gi|315607764|ref|ZP_07882757.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccae ATCC 33574]
gi|315250233|gb|EFU30229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccae ATCC 33574]
Length = 359
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + L + G FY+KI +E E W +C EED++ A A
Sbjct: 8 KDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKIGPEEQEE--W-DCSSEEDLEMATA 64
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF DA ++
Sbjct: 65 VAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DAKMGHDY 123
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ IFP+G K+
Sbjct: 124 DLIATGHYAQTEWIDGRK-----WLVTSPDPVKDQTDFLAQIYDWQLRKAIFPIGHYMKD 178
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N R+DSQGICFLG+I ++E++ R++GE G ++E ETG +G+H G
Sbjct: 179 EVREIAGREHLVNAKRRDSQGICFLGQINYNEYLRRYLGEQPGDVIELETGKTIGEHRGL 238
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL GGPW+VV+KDV NV++VS Y ++ FR+ L+ P
Sbjct: 239 WFHTIGQRKGLGFGGGPWFVVKKDVGRNVLYVSHGYDPQTAYKQDFRMHDFHVLT--TPI 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+ R+ K+RH P + VE E I V G+A GQF Y Q RC
Sbjct: 297 DSERVTFKIRHTPDYLPAT-----VEKTSEGIYTVHADAPIHGVAPGQFCVVYDEQHHRC 351
Query: 375 IGSGVI 380
GSG I
Sbjct: 352 FGSGEI 357
>gi|429739516|ref|ZP_19273270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella saccharolytica F0055]
gi|429156905|gb|EKX99524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella saccharolytica F0055]
Length = 359
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/371 (42%), Positives = 213/371 (57%), Gaps = 20/371 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDS+V + L G FY+KI +E E W +C EED++ A A
Sbjct: 7 KDKRIAVLLSGGVDSAVVVYELARLGLQPDCFYIKIGPEEGEE--W-DCSSEEDLEMASA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+V++ EYW V SY +E+ + G TPNPDV+CN IKFGAF D E+
Sbjct: 64 VATRFGCKLDVINCHKEYWDKVTSYTMEKVKAGFTPNPDVMCNRLIKFGAFHDK-RGYEY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + + L S D VKDQT FL+ + QL++ +FP+G K
Sbjct: 123 DLIATGHYAQTERINGQK-----WLVTSPDPVKDQTDFLAQIYDWQLQKALFPIGHYRKG 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLGKI +++++ R++GE G +LE ETG +G H G
Sbjct: 178 EVRRIAEREHLINARRKDSQGICFLGKINYNDYLRRYLGENPGEVLELETGKKIGMHRGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR GL GGPWY V+KDV NV++VS+ + ++ F + L L+ P
Sbjct: 238 WFHTIGQRHGLGFGGGPWYAVKKDVVQNVLYVSKGFEPSTAYKKDFPINDLHLLTA--PL 295
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT--RC 374
+ + K+RH P Y L E GE +V QG+A GQF Y RC
Sbjct: 296 DSLEVTFKIRHTPEHYRAVL-----EPIGEGAYLVHAEAPIQGVAPGQFCVLYDKVHHRC 350
Query: 375 IGSGVILESWD 385
GS I +WD
Sbjct: 351 YGSAEI--AWD 359
>gi|407893522|ref|ZP_11152552.1| tRNA-specific 2-thiouridylase MnmA [Diplorickettsia massiliensis
20B]
Length = 352
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 203/365 (55%), Gaps = 20/365 (5%)
Query: 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82
V LSGGVDSSVA LL G++ ++K W ++D E + CP D A+AVC ++D
Sbjct: 2 VGLSGGVDSSVAALLLQQQGYTVEGLFMKNWEEDDTETY---CPASIDRADAEAVCQRLD 58
Query: 83 VPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASG 142
+PL ++ EYW+ V ++ ++EY+ GRTPNPD+LCN IKF F+D D++A+G
Sbjct: 59 IPLHTINFAAEYWERVFTHFLKEYKAGRTPNPDILCNKEIKFKLFLDYALHRGADFIATG 118
Query: 143 HYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFA 202
HYA + H D Y +L S+D KDQTYFL L Q LKR +FPL K EVR A
Sbjct: 119 HYAGITHQ--DTHY---LLSKSRDTNKDQTYFLYTLGQTPLKRTLFPLANHLKTEVRTLA 173
Query: 203 TQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIG 262
LP +KDS GICF+G+ KF +F+A ++ G+I E TG +G+H G +YT+G
Sbjct: 174 KAAGLPTHAKKDSTGICFIGERKFRQFLAHYLPATPGLI-ETPTGQVIGEHHGLMYYTLG 232
Query: 263 QRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
QRQGL + G PWYV+ K V NV+ V++ R L W++G P
Sbjct: 233 QRQGLGIGGQKNASEQPWYVIAKYVDRNVLVVAQGKNHPALYAHTLRCAQLHWVTGEKPT 292
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
R K+R+ C L E+ +++ VV SE + GQ FYQG C+G
Sbjct: 293 FPYRCTAKIRYRQEETPCFL----TEESADSLQVV-FSEAQWAITPGQSVVFYQGPYCLG 347
Query: 377 SGVIL 381
G+IL
Sbjct: 348 GGIIL 352
>gi|403221929|dbj|BAM40061.1| uncharacterized protein TOT_020001047 [Theileria orientalis strain
Shintoku]
Length = 625
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 155/406 (38%), Positives = 236/406 (58%), Gaps = 41/406 (10%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
LS S +K + VAVLLSGGVDSS++L +L + G+ AFYL++ D ++ C
Sbjct: 231 LSNSATVEKLIDVAVLLSGGVDSSLSLWILKNRGYHVEAFYLQV---NDIDDDTGTCK-S 286
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
+D+K+A VC ++ V L V+ + Y+ +++ IE Y+ G PNPDV CN RIKFG F+
Sbjct: 287 DDLKFASEVCKKIGVKLNVLPFSKLYYDDILKDFIENYKQGEVPNPDVWCNNRIKFGQFL 346
Query: 129 DAISSMEFDYVASGHYAKVVHSS---ADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKR 185
D + FDYVASGHYA V AD+ + L LSKD VKDQTYFLS L+Q QL +
Sbjct: 347 DRAINWGFDYVASGHYASAVQDKSLCADRRIRR--LVLSKDPVKDQTYFLSRLNQFQLSK 404
Query: 186 LIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAE 245
LIFPL ++K++VR++A LP+ +++DS G+CF+ + SE++ +G+ G I++ +
Sbjct: 405 LIFPLEYLTKQQVREYARIIGLPSHNKEDSVGLCFMEDMNISEYLLSKLGKNTGPIVDYK 464
Query: 246 TGDFLGKHWGFWFYTIGQRQGLR-------LPGGPWYVVEKDVKNNVVFVSRNYYSFDKK 298
T +G+H G + Y+IGQR+ L P YV++KD+ NNV++V+ +Y S +
Sbjct: 465 TKQIIGEHPGVFNYSIGQRKNLNNYIYTKCNPNTLRYVIKKDLNNNVLYVTEDYDSEEYT 524
Query: 299 -----RRLFRVGSLKWLSGLPPEEIS---------------RLQCKVRHGPGFYNCNLMI 338
RR F++ + + + E ++ RL+ K+RH P FY+ I
Sbjct: 525 QPGGVRRSFKITDIFFNTTDYAEVLNRCKIEDGIDAHGDAYRLRVKLRHSPKFYDS---I 581
Query: 339 EHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESW 384
H+ + NI V LSE D G++ GQ+ FY C+GS ++ S+
Sbjct: 582 THLYNNSSNI--VCLSEADSGISTGQYCVFYLDDLCLGSAKMITSY 625
>gi|325269460|ref|ZP_08136077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella multiformis DSM 16608]
gi|324988381|gb|EGC20347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella multiformis DSM 16608]
Length = 360
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 214/370 (57%), Gaps = 24/370 (6%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + L G FY++I +E E W +C EEDM+ A A
Sbjct: 7 KDKRIAVLLSGGVDSSVVVYELARLGLHPDCFYIRIGPEEKEE--W-DCSSEEDMEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L++V EYW V Y +E+ + G TPNPDV+CN IKFGAF D +
Sbjct: 64 VAHRFGCRLQIVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHGY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QLK+ +FP+G K+
Sbjct: 123 DLIATGHYAQTEWIDGRK-----WLTTSPDPVKDQTDFLAQIYDWQLKKAVFPIGHYEKD 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A Q L N RKDSQGICFLG I ++E+V R++GE G I+E ETG +G+H G
Sbjct: 178 EVRRIAEQEHLINAHRKDSQGICFLGNIDYNEYVRRYLGEQPGDIIELETGKKIGEHRGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL----SG 312
WF+TIGQR+GL L GGPW+VV KDV N+++VS Y + F + +L +G
Sbjct: 238 WFHTIGQRKGLGLGGGPWFVVRKDVVQNILYVSHGYDPETAYKSDFPLHDFHYLTEGVTG 297
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ-- 370
LP ++ K+RH P ++ +E + DG +++ +E G+A GQF Y
Sbjct: 298 LP----EKITFKIRHTPEYHPAT--VEQLPDGK---SIIHSAEPIHGVAPGQFCVVYDEC 348
Query: 371 GTRCIGSGVI 380
RC GSG I
Sbjct: 349 HHRCYGSGEI 358
>gi|265754225|ref|ZP_06089414.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
gi|345515896|ref|ZP_08795393.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei 5_1_36/D4]
gi|229436527|gb|EEO46604.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei 5_1_36/D4]
gi|263234934|gb|EEZ20489.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
Length = 354
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 206/369 (55%), Gaps = 25/369 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A L+SGGVDS+V + LL G+ FY+KI D + C EED++ A
Sbjct: 1 MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKIGMDGDED---LTCTAEEDIELCTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + L ++ L +YW NVV+Y I++ + G TPNPDV+CN IKFG F + + +D
Sbjct: 58 RKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCFEQEVGHL-YDK 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA ++ L ++D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYASILEKDG-----KIWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKNEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R +GE EG I+E ETG +G H G+WF
Sbjct: 172 RDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGEKEGAIIEMETGKRIGTHKGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGL 313
+TIGQR+GL L GGPW+V+ KD+ N+++VSR Y Y D F + G
Sbjct: 232 HTIGQRKGLGLSGGPWFVIRKDINENIIYVSRGYDTEKQYGTDFALHDFHFITEDLWEGD 291
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QG 371
P +IS K+RH F L G + + E QG+A GQF Y
Sbjct: 292 SPVDIS---FKIRHTDTFMKGTLT------RGNGLFQIHSHEPLQGIAPGQFGVLYDKDA 342
Query: 372 TRCIGSGVI 380
C+GSG I
Sbjct: 343 EICVGSGEI 351
>gi|330995326|ref|ZP_08319236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paraprevotella xylaniphila YIT 11841]
gi|329575821|gb|EGG57345.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paraprevotella xylaniphila YIT 11841]
Length = 352
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/367 (40%), Positives = 214/367 (58%), Gaps = 22/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++AVL+SGGVDS+VA+ + G+ FY+KI E C EED++ + A
Sbjct: 1 MRIAVLISGGVDSAVAVHRICEMGYKPDLFYIKI----GMEGEGLSCTAEEDIELSTATA 56
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L +YW+ VV Y +E R G TPNPDV+CN IKFG F + +D
Sbjct: 57 RRYGLHLEVVDLQKQYWELVVGYAMERARRGLTPNPDVMCNKLIKFGCFEQEVGH-RYDK 115
Query: 139 VASGHYAKVVHSSADQEYKPSV-LELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+A+GHYA V +E + L ++D VKDQT FL+ + Q+ +L+FP+G + KEE
Sbjct: 116 IATGHYATV------RERDGKIWLGTARDPVKDQTDFLAQIDSLQVAKLMFPVGDLMKEE 169
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A LP+ R+DSQGICFLG+I +++FV R +GE EG ++E ETG +G H G+W
Sbjct: 170 VRRIAETQRLPSAKRRDSQGICFLGQIDYNDFVRRFLGEREGAVVEIETGRRIGTHKGYW 229
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+TIGQR+GL L GGPW+VV+KDV+ N+++VS Y + + F + +++G P +
Sbjct: 230 FHTIGQRKGLGLGGGPWFVVKKDVEQNILYVSHGYDTLLQYGHSFNLKDFHFITGNPWGD 289
Query: 318 ISRLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ K RH P F L G ++ E QG+A GQF Y
Sbjct: 290 APEVDVTFKTRHQPHFMKGRLY-----RAGHGYR-LESPERIQGIAPGQFGVVYDAAAEI 343
Query: 374 CIGSGVI 380
CIGSG I
Sbjct: 344 CIGSGEI 350
>gi|445114474|ref|ZP_21377936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella nigrescens F0103]
gi|444840703|gb|ELX67729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella nigrescens F0103]
Length = 376
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 211/377 (55%), Gaps = 22/377 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + +G + FY++I +E E W +C EED++ A A
Sbjct: 7 KDKRIAVLLSGGVDSSVVVYEFARSGLTPDCFYIRIGPEEKEE--W-DCNSEEDVEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + V+ EYW V Y +++ R G TPNPDV+CN IKFGAF D ++
Sbjct: 64 VARRYGCRFNVIDCHKEYWSQVTKYTMDKVRAGLTPNPDVMCNRIIKFGAF-DEKCGHDY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ IFP+G K
Sbjct: 123 DLIATGHYAQTKWIDGKK-----WLCTSPDPVKDQTDFLAQIYDWQLRKAIFPIGHYEKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 178 EVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQAGDVVELETGRKIGQHKGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL GGPW+VV+KDV NV+FVS Y ++ F+V L WL+ P
Sbjct: 238 WFHTIGQRKGLGFGGGPWFVVKKDVAANVLFVSHGYDPETAYKKDFKVHGLHWLTETPRP 297
Query: 317 EIS----------RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD-QGLAAGQF 365
E + K+RH P F+ L + GE + SED G+A GQF
Sbjct: 298 EAGGSDAKTYRQISICFKIRHTPEFHKGYLELLPANGDGEPTEAIVHSEDKIHGVAPGQF 357
Query: 366 AAFYQG--TRCIGSGVI 380
Y RC GS I
Sbjct: 358 CVIYDKDHNRCFGSAEI 374
>gi|423229942|ref|ZP_17216347.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL02T00C15]
gi|423247032|ref|ZP_17228083.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL02T12C06]
gi|392632152|gb|EIY26115.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL02T00C15]
gi|392633645|gb|EIY27586.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL02T12C06]
Length = 354
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 206/369 (55%), Gaps = 25/369 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A L+SGGVDS+V + LL G+ FY+KI D + C EED++ A
Sbjct: 1 MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKIGMDGDED---LTCTAEEDIELCTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + L ++ L +YW NVV+Y I++ + G TPNPDV+CN IKFG F + + +D
Sbjct: 58 RKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCFEQEVGHL-YDK 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA ++ L ++D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYASILEKDG-----KIWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKNEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R +GE EG I+E ETG +G H G+WF
Sbjct: 172 RDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGEKEGAIIEMETGKRIGTHKGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGL 313
+TIGQR+GL L GGPW+V+ KD+ N+V+VSR Y Y D F + G
Sbjct: 232 HTIGQRKGLGLSGGPWFVIRKDINENIVYVSRGYDTEKQYGTDFALHDFHFITEDLWEGD 291
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P ++S K+RH F L G + + E QG+A GQF Y
Sbjct: 292 SPVDVS---FKIRHTDTFMKGTLT------RGNGLFQIHSHEPLQGIAPGQFGVLYDKDT 342
Query: 374 --CIGSGVI 380
C+GSG I
Sbjct: 343 EICVGSGEI 351
>gi|294672865|ref|YP_003573481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella ruminicola 23]
gi|294474344|gb|ADE83733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella ruminicola 23]
Length = 359
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 214/364 (58%), Gaps = 19/364 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++AVLLSGGVDSSV + G FY+KI +E+ E W +C EED++ A AV
Sbjct: 10 RIAVLLSGGVDSSVVVYEFARMGLHPDCFYIKIGPEEEEE--W-DCSSEEDLEMATAVSH 66
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ LEV+ +EYW V Y +++ R G TPNPDV+CN IKFGAF D ++D +
Sbjct: 67 KFGCKLEVIDCHNEYWDQVTKYTMDKVRAGLTPNPDVMCNRLIKFGAF-DEKRGHDYDLI 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA + E L S D VKDQT FL+ ++ QLK+ +FP+G K+EVR
Sbjct: 126 ATGHYA----MTETDENGDKWLCTSPDPVKDQTDFLAQIADWQLKKALFPIGHYVKDEVR 181
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L N RKDSQGICFLGKI +++++ R++GE G ++E ETG +G+H G WF+
Sbjct: 182 VIAEREHLVNAKRKDSQGICFLGKINYNDYIRRYLGEQPGDVIELETGKRIGEHKGLWFH 241
Query: 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG-LPPEEI 318
TIGQR+G+ GGPW+VV+KDV NN+++VS Y + F V +L+ L P
Sbjct: 242 TIGQRKGMGFGGGPWFVVKKDVANNILYVSHGYDPETAYKADFPVHDFHFLTKELQP--- 298
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT--RCIG 376
+++ K+RH P ++ L E + +V + G+A GQF Y RC+G
Sbjct: 299 TKITFKIRHTPEYHPATL-----EWTSPSTCMVHSKDKIHGVAPGQFCVVYDKDHHRCLG 353
Query: 377 SGVI 380
SG I
Sbjct: 354 SGEI 357
>gi|237707989|ref|ZP_04538470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 9_1_42FAA]
gi|229457975|gb|EEO63696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 9_1_42FAA]
Length = 354
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/369 (39%), Positives = 206/369 (55%), Gaps = 25/369 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A L+SGGVDS+V + LL G+ FY+KI D + C EED++ A
Sbjct: 1 MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKIGMDGDED---LTCTAEEDIELCTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + L ++ L +YW NVV+Y I++ + G TPNPDV+CN IKFG F + + +D
Sbjct: 58 RKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCFEQEVGHL-YDK 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA ++ L ++D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYASILEKDG-----KIWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKNEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R +GE EG I+E ETG +G H G+WF
Sbjct: 172 RDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGEKEGAIIEMETGKRIGTHKGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGL 313
+TIGQR+GL L GGPW+V+ KD+ N+++VSR Y Y D F + G
Sbjct: 232 HTIGQRKGLGLSGGPWFVIRKDINENIIYVSRGYDTEKQYGTDFALHDFHFITEDLWEGD 291
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QG 371
P ++S K+RH F L G + + E QG+A GQF Y
Sbjct: 292 SPVDVS---FKIRHTDTFMKGTLT------RGNGLFQIHSHEPLQGIAPGQFGVLYDKDA 342
Query: 372 TRCIGSGVI 380
C+GSG I
Sbjct: 343 EICVGSGEI 351
>gi|260912505|ref|ZP_05919040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 472 str. F0295]
gi|260633384|gb|EEX51539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 472 str. F0295]
Length = 358
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
+G K+AVLLSGGVDSSV + + G FY+KI +E E W +C EED++ A A
Sbjct: 7 QGKKIAVLLSGGVDSSVVVYEFNRLGLHPDCFYIKIGPEEAEE--W-DCASEEDLEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + LEVV EYW+ V Y +++ + G TPNPDV+CN IKFGAF + E+
Sbjct: 64 VAKRFGCKLEVVDCHKEYWEQVTRYTMDKVKAGFTPNPDVMCNRLIKFGAFHEK-RGHEY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ IFP+G K
Sbjct: 123 DLIATGHYAQTEWIDGKK-----WLVTSPDPVKDQTDFLAQIYDWQLQKAIFPIGHYQKG 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLGKI +++++ R +GE G +LE E+ +G H G
Sbjct: 178 EVREIAEREHLINAKRKDSQGICFLGKINYNDYIRRFLGENPGEVLELESEKKIGMHRGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR GL GGPWY V+KDV+ NV+FVS+ Y ++ F+V L L+ P
Sbjct: 238 WFHTIGQRHGLGFGGGPWYAVKKDVERNVLFVSKGYEPATAYKKGFKVHDLHLLTA--PL 295
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+ + K+RH P ++ L E + DGG +V QG+A GQF Y + RC
Sbjct: 296 DGLDVTFKIRHTPEYHRAQL--EPLPDGG---YIVHAEAPMQGVAPGQFCVIYDKEHHRC 350
Query: 375 IGSGVI 380
GS I
Sbjct: 351 FGSAEI 356
>gi|212690555|ref|ZP_03298683.1| hypothetical protein BACDOR_00040 [Bacteroides dorei DSM 17855]
gi|212666904|gb|EEB27476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides dorei DSM 17855]
Length = 354
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/369 (39%), Positives = 206/369 (55%), Gaps = 25/369 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A L+SGGVDS+V + LL G+ FY+KI D + C EED++ A
Sbjct: 1 MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKIGMDGDED---LTCTAEEDIELCTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + L ++ L +YW NVV+Y I++ + G TPNPDV+CN IKFG F + + +D
Sbjct: 58 RKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCFEQEVGHL-YDK 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA ++ L ++D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYASILEKDG-----KLWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKNEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R +GE EG I+E ETG +G H G+WF
Sbjct: 172 RDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGEKEGAIIEMETGKRIGTHKGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGL 313
+TIGQR+GL L GGPW+V+ KD+ N+++VSR Y Y D F + G
Sbjct: 232 HTIGQRKGLGLSGGPWFVIRKDIDENIIYVSRGYDTEKQYGTDFALHDFHFITEDLWEGD 291
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QG 371
P ++S K+RH F L G + + E QG+A GQF Y
Sbjct: 292 SPVDVS---FKIRHTDTFMKGTLT------RGNGLFQIHSHEPLQGIAPGQFGVLYDKDA 342
Query: 372 TRCIGSGVI 380
C+GSG I
Sbjct: 343 EICVGSGEI 351
>gi|423241595|ref|ZP_17222707.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL03T12C01]
gi|392641048|gb|EIY34836.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL03T12C01]
Length = 354
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/369 (39%), Positives = 206/369 (55%), Gaps = 25/369 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A L+SGGVDS+V + LL G+ FY+KI D + C EED++ A
Sbjct: 1 MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKIGMDGDED---LTCTAEEDIELCTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + L ++ L +YW NVV+Y I++ + G TPNPDV+CN IKFG F + + +D
Sbjct: 58 RKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCFEQEVGHL-YDK 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA ++ L ++D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYASILEKDG-----KIWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKNEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R +GE EG I+E ETG +G H G+WF
Sbjct: 172 RDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGEKEGAIIEMETGKRIGTHKGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGL 313
+TIGQR+GL L GGPW+V+ KD+ N+++VSR Y Y D F + G
Sbjct: 232 HTIGQRKGLGLSGGPWFVIRKDIDENIIYVSRGYDTEKQYGTDFALHDFHFITEDLWEGD 291
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QG 371
P ++S K+RH F L G + + E QG+A GQF Y
Sbjct: 292 SPVDVS---FKIRHTDTFMKGTLT------RGNGLFQIHSHEPLQGIAPGQFGVLYDKDA 342
Query: 372 TRCIGSGVI 380
C+GSG I
Sbjct: 343 EICVGSGEI 351
>gi|282880951|ref|ZP_06289642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella timonensis CRIS 5C-B1]
gi|281305174|gb|EFA97243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella timonensis CRIS 5C-B1]
Length = 358
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + L G FY+KI +E E W +C EED++ A
Sbjct: 7 KDKRIAVLLSGGVDSSVVVYELVRMGVQPDCFYIKIGPEEQEE--W-DCTSEEDLEMATH 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF + + ++
Sbjct: 64 VAAKYGCKLQVVDCHKEYWNEVTRYTMEKVKAGYTPNPDVMCNRLIKFGAFHEKMG-YQY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QLK+ +FP+G K
Sbjct: 123 DLIATGHYAQTEIIEGRK-----WLTTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYQKG 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVRK A + L N RKDSQGICFLG+I ++E++ R+IGE G ++E ETG +G+H G
Sbjct: 178 EVRKIAEREHLINAKRKDSQGICFLGQINYNEYLRRYIGENPGKVIELETGKQIGEHRGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR GL GGPW+VV+KDV NNV+++S+ Y ++ F++ +L+ P
Sbjct: 238 WFHTIGQRHGLGFGGGPWFVVKKDVANNVLYISKGYDPQTAYQKDFKIHDFHFLT--MPV 295
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
++ + K+RH P F++ +E + V G+A GQF Y Q C
Sbjct: 296 DMHHVTFKIRHTPEFHSGI-----IEQTAPDSYTVHAETAIHGVAPGQFCVVYDEQHHCC 350
Query: 375 IGSGVI 380
IGSG I
Sbjct: 351 IGSGEI 356
>gi|387133005|ref|YP_006298977.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Prevotella intermedia 17]
gi|386375853|gb|AFJ08653.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella intermedia 17]
Length = 376
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/377 (41%), Positives = 211/377 (55%), Gaps = 22/377 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + G + FY++I +E E W +C EED++ A A
Sbjct: 7 KDKRIAVLLSGGVDSSVVVYEFARLGLTPDCFYIRIGPEEKEE--W-DCNSEEDVEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + V+ EYW V Y +++ R G TPNPDV+CN IKFGAF D ++
Sbjct: 64 VARRYGCRFSVIDCHKEYWSQVTKYTMDKVRAGLTPNPDVMCNRIIKFGAF-DEKCGHDY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ IFP+G +K
Sbjct: 123 DLIATGHYAQTKWIDGKK-----WLCTSPDPVKDQTDFLAQIYDWQLRKAIFPIGHYAKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 178 EVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQVGDVVELETGKKIGQHKGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL GGPW+VV+KDV NV+FVS Y ++ F+V L WL+ P
Sbjct: 238 WFHTIGQRKGLGFGGGPWFVVKKDVAANVLFVSHGYDPETAYKKDFKVHGLHWLTETPRP 297
Query: 317 EIS----------RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD-QGLAAGQF 365
E + K+RH P F+ L + D E + SED G+A GQF
Sbjct: 298 ESGDSDAEMAGKISICFKIRHTPEFHKGYLELLPAADNSEPTEAIVHSEDKIHGVAPGQF 357
Query: 366 AAFY--QGTRCIGSGVI 380
Y RC GS I
Sbjct: 358 CVIYDKNHNRCFGSAEI 374
>gi|406944280|gb|EKD76088.1| hypothetical protein ACD_43C00228G0001 [uncultured bacterium]
Length = 373
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQED---FENFWTEC 65
++ + K VAV +SGGVDS+V+ LL G+ AFY+K W E + C
Sbjct: 1 MTIAQHQTKNNTVAVAMSGGVDSAVSAALLLQQGYQVEAFYMKNWSDEAEAMYRGKHDRC 60
Query: 66 PWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFG 125
PWE+DMK KA+C + +P + ++ EY V Y +EE + G TPNPDVLCNT+IKF
Sbjct: 61 PWEDDMKDVKAICAHLKIPFQSINFEKEYRTKVFQYFLEEIKAGCTPNPDVLCNTQIKFL 120
Query: 126 AFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSK-------DKVKDQTYFLSHL 178
AF++ ++ F+ +A+GHYA+V E +PS + D KDQ+YF+ HL
Sbjct: 121 AFLNKALALGFEKIATGHYARV------GELRPSAPNAASWQLLKGVDPNKDQSYFIYHL 174
Query: 179 SQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEME 238
+Q QL +++FP+G + K EVRK A F LP + DSQG+CF+G I F F+ +++
Sbjct: 175 NQTQLAKILFPIGHLQKSEVRKLAQDFKLPVAHKPDSQGLCFIGDINFQTFLKQYVKAEP 234
Query: 239 GVILEAETGDFLGKHWGFWFYTIGQRQGLRLPG-GPWYVVEKDVKNNVVFVSRNYYSFDK 297
G ++ + G +G+H G +YTIGQRQGL + G GP+YVVEK + +N + + +
Sbjct: 235 GPMILTD-GTIMGQHKGLAYYTIGQRQGLEIGGTGPYYVVEKRLADNTLIICQGANDKSL 293
Query: 298 KRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD 357
W+SG+ P E K+R+ C ++ H+E +E
Sbjct: 294 LSSWCTFAEEHWVSGVRPAEEFECSAKIRYRSPDVKCRVIGNHIE----------FAEPA 343
Query: 358 QGLAAGQFAAFYQGTRCIGSGVI 380
+ + GQFA FY G + +G GVI
Sbjct: 344 RAVTPGQFAVFYNGDQVLGGGVI 366
>gi|302346886|ref|YP_003815184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella melaninogenica ATCC 25845]
gi|302150717|gb|ADK96978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella melaninogenica ATCC 25845]
Length = 360
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 214/366 (58%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
+G ++AVLLSGGVDSSV + G FY+KI +E + W +C EED++ A
Sbjct: 7 EGKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKIGPEEKED--W-DCNSEEDLEMATL 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + LEV+ EYW V Y +E+ + G TPNPDV+CN IKFGAF D ++
Sbjct: 64 VTRRFGCKLEVIDCHKEYWDQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHDY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QLK+ IFP+G K
Sbjct: 123 DLIATGHYAQTEWIDGRK-----WLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + +L N RKDSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 178 EVREIAERENLINAHRKDSQGICFLGNIDYNEYVRRYLGEEIGDVIELETGKKIGEHKGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL L GGPW+V++KDV N+++VS Y ++ F + +L+
Sbjct: 238 WFHTIGQRKGLGLGGGPWFVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHFLTEGITT 297
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
++ K+RH P ++ +E + DG ++ +E+ G+A GQF Y Q RC
Sbjct: 298 LPEKITFKIRHTPEYHPAT--VEQLSDGR---CIIHSTENIHGVAPGQFCVVYDEQHHRC 352
Query: 375 IGSGVI 380
GSG I
Sbjct: 353 FGSGEI 358
>gi|288802136|ref|ZP_06407577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella melaninogenica D18]
gi|288335571|gb|EFC74005.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella melaninogenica D18]
Length = 360
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 214/366 (58%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
+G ++AVLLSGGVDSSV + G FY+KI +E + W +C EED++ A
Sbjct: 7 EGKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKIGPEEKED--W-DCNSEEDLEMATL 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + LEV+ EYW V Y +E+ + G TPNPDV+CN IKFGAF D ++
Sbjct: 64 VARRFGCKLEVIDCHKEYWDKVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHDY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QLK+ IFP+G K
Sbjct: 123 DLIATGHYAQTEWIDGRK-----WLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + +L N RKDSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 178 EVREIAERENLINAHRKDSQGICFLGNIDYNEYVRRYLGEEIGDVIELETGKKIGEHKGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL L GGPW+V++KDV N+++VS Y ++ F + +L+
Sbjct: 238 WFHTIGQRKGLGLGGGPWFVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHFLTEGITT 297
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
++ K+RH P ++ +E + DG ++ +E+ G+A GQF Y Q RC
Sbjct: 298 LPEKITFKIRHTPEYHPAT--VEQLSDGR---CIIHSTENIHGVAPGQFCVVYDEQHHRC 352
Query: 375 IGSGVI 380
GSG I
Sbjct: 353 FGSGEI 358
>gi|288799734|ref|ZP_06405193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 299 str. F0039]
gi|288332982|gb|EFC71461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 299 str. F0039]
Length = 357
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 153/363 (42%), Positives = 211/363 (58%), Gaps = 18/363 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+AVLLSGGVDSSV L L G FY+KI +++ E W +C EED++ A AV
Sbjct: 9 KIAVLLSGGVDSSVVLYELVQQGLKPDCFYIKIGPEQEEE--W-DCSSEEDLEMATAVAH 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ LEV+ EYW V Y +++ + G TPNPDV+CN IKFGAF D ++D +
Sbjct: 66 RYGCKLEVIDCHKEYWDQVTKYTMDKVKAGFTPNPDVMCNRLIKFGAFHDK-KGKDYDLI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ + + L S D VKDQT FL+ + QLK+ IFP+G K+EVR
Sbjct: 125 ATGHYAQTEIINGKK-----WLVTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHFQKDEVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L N RKDSQGICFLGKI +++++ +++GE G +LE +T +G+H G WFY
Sbjct: 180 VIAEREHLINAKRKDSQGICFLGKINYNDYIRKYLGENIGEVLELQTNKRIGQHKGLWFY 239
Query: 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEIS 319
TIGQR GL GGPW+VV+KDV NN+++VS+ Y + F V +L+ ++S
Sbjct: 240 TIGQRHGLGFGGGPWFVVKKDVNNNILYVSKGYEPSSAFKSEFGVSDFHFLT--EEVDLS 297
Query: 320 RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRCIGS 377
+ K+RH P F+ + E N + G+A GQF Y + RCIGS
Sbjct: 298 NVTFKIRHTPEFHKARM-----EKINNNEYRLYSECPIHGVAPGQFCVVYDEEHHRCIGS 352
Query: 378 GVI 380
G I
Sbjct: 353 GEI 355
>gi|345879827|ref|ZP_08831393.1| tRNA methyl transferase [Prevotella oulorum F0390]
gi|343918894|gb|EGV29652.1| tRNA methyl transferase [Prevotella oulorum F0390]
Length = 371
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 156/369 (42%), Positives = 211/369 (57%), Gaps = 25/369 (6%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
VA+LLSGGVDSSV L L S G FY+KI +E E W C EED++ A AV +
Sbjct: 17 VALLLSGGVDSSVVLHELVSHGVKPDCFYIKIGPEEQSE--WN-CNSEEDVEMATAVAQR 73
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
LE+V EYW V Y +E+ R G TPNPDV+CN IKFGAF D ++ ++A
Sbjct: 74 YGCKLEIVDCHCEYWNQVTRYTMEKVRAGYTPNPDVMCNRLIKFGAF-DEKMGHDYAFIA 132
Query: 141 SGHYAKVVHSSADQEYKPSV--LELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+GHYA+ E+ L S D VKDQT FL+ + QL++ +FP+G K+EV
Sbjct: 133 TGHYAQT-------EWIDGCKWLTTSPDPVKDQTDFLAQIYSWQLQKAVFPIGHFVKDEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L N RKDSQGICFLG I ++E++ R++GE G I+E ET +G+H G WF
Sbjct: 186 REVAEREHLINARRKDSQGICFLGNINYNEYIERYLGEAPGDIVEWETHQRIGRHRGLWF 245
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---- 314
+TIGQR+GL L GGPW+VV+KD++ N ++VS Y ++ FRV + P
Sbjct: 246 HTIGQRKGLGLGGGPWFVVKKDMEQNTLYVSHGYDPETAYQQQFRVHDFHATTYCPEGMA 305
Query: 315 -PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QG 371
P +R++ K+RH P + L E GE ++ G+A GQF Y +
Sbjct: 306 QPTLPARIRFKIRHTPDYLPARL-----EPTGEGSFILHADAKIHGVAPGQFCVIYDERH 360
Query: 372 TRCIGSGVI 380
RC GSG I
Sbjct: 361 HRCFGSGEI 369
>gi|332878522|ref|ZP_08446243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357045011|ref|ZP_09106655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paraprevotella clara YIT 11840]
gi|332683617|gb|EGJ56493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355532059|gb|EHH01448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paraprevotella clara YIT 11840]
Length = 352
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 151/369 (40%), Positives = 214/369 (57%), Gaps = 26/369 (7%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++AVL+SGGVDS+V + + G+ FY+KI E C EED++ + A
Sbjct: 1 MRIAVLISGGVDSAVVVHRICEMGYKPDLFYIKI----GMEGEGLSCTAEEDIELSTATA 56
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L +YW+ VV Y +E R G TPNPDV+CN IKFG F + +D
Sbjct: 57 RRYGLHLEVVDLQKQYWELVVGYAMERARRGLTPNPDVMCNKLIKFGCFEQEVGH-RYDK 115
Query: 139 VASGHYAKVVHSSADQEYKPSV-LELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+A+GHYA V +E + L ++D VKDQT FL+ + Q+ +L+FP+G + KEE
Sbjct: 116 IATGHYATV------RERDGKIWLGTARDPVKDQTDFLAQIDSLQVAKLMFPVGDLMKEE 169
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A LP+ R+DSQGICFLG+I +++FV R +GE EG ++E ETG +G H G+W
Sbjct: 170 VRRIADTQRLPSAKRRDSQGICFLGQIDYNDFVRRFLGEREGAVIEIETGRRIGTHKGYW 229
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS----GL 313
F+TIGQR+GL L GGPW+VV+KDV+ N+++VS Y + + F + +++ G
Sbjct: 230 FHTIGQRKGLGLGGGPWFVVKKDVEQNILYVSHGYDTLLQYGHSFNLKDFHFITENPWGD 289
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PE + K RH P F L H G + + E QG+A GQF Y
Sbjct: 290 APE--VDVTFKTRHQPHFMKGRL---HRAGHGYRL---ESPERIQGIAPGQFGVVYDAAA 341
Query: 374 --CIGSGVI 380
CIGSG I
Sbjct: 342 EICIGSGEI 350
>gi|281420586|ref|ZP_06251585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella copri DSM 18205]
gi|281405359|gb|EFB36039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella copri DSM 18205]
Length = 360
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 214/366 (58%), Gaps = 17/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + G FY+KI +E E W +C EED++ A A
Sbjct: 8 KDKRIAVLLSGGVDSSVVVWEFAQLGLHPDCFYIKIGPEEKEE--W-DCSSEEDLEMATA 64
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF D +
Sbjct: 65 VARKYGCKLQVVDCHHEYWNEVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHNY 123
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + E L S D VKDQT FL+ + QLK+ IFP+G K
Sbjct: 124 DLIATGHYAQ----TETDENGDKWLVTSPDPVKDQTDFLAQIESWQLKKAIFPIGHHIKN 179
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG+I +++++ R++GE G ++E ETG +G+H G
Sbjct: 180 EVREIAEEEHLINAKRKDSQGICFLGQINYNDYIRRYLGEKPGDVIEMETGKRIGEHKGL 239
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL GGPW+V++KDV+NN+++VS Y ++ F + +L+
Sbjct: 240 WFHTIGQRKGLGFGGGPWFVIKKDVENNILYVSHGYDPQSAYKKDFPLHDFHFLT--REV 297
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
+ ++ K+RH P ++ IE +EDG ++ E G+A GQF Y RC
Sbjct: 298 AMQKVTFKIRHTPEYHPAT--IEKLEDGR---WMIHSEEAIHGVAPGQFCVVYDEHHHRC 352
Query: 375 IGSGVI 380
GSG I
Sbjct: 353 YGSGEI 358
>gi|299141829|ref|ZP_07034964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oris C735]
gi|298576680|gb|EFI48551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oris C735]
Length = 366
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 213/371 (57%), Gaps = 21/371 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++A+LLSGGVDSSV L + S G FY+ I +E E W +C EED++ A A
Sbjct: 8 KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMIGPEEKEE--W-DCTSEEDLEMATA 64
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
+ ++ L+V+ EYW V Y +++ + G TPNPDV+CN IKFGAF + I ++
Sbjct: 65 LTNRFGCQLKVIDCHKEYWSQVTRYTMDKVKAGFTPNPDVMCNRLIKFGAFDEKIGH-DY 123
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ IFP+G K
Sbjct: 124 DLIATGHYAQTEWIDGRK-----WLTTSPDPVKDQTDFLAQIYGWQLRKAIFPIGHFEKN 178
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N R+DSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 179 EVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRYLGESVGDVIELETGKKIGEHKGL 238
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP-- 314
WF+TIGQR+GL GGPW+VV+KDV+ N+++VS Y ++ F++ + P
Sbjct: 239 WFHTIGQRKGLGFGGGPWFVVKKDVERNILYVSHGYDPETAYKQDFKIHDFHATTYCPEG 298
Query: 315 ---PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY-- 369
PE R+ K+RH P + +E GEN V+ G+A GQF Y
Sbjct: 299 TALPELPERITFKIRHTPEYLPAT-----IEKTGENAYVIHADSKIHGVAPGQFCVVYDA 353
Query: 370 QGTRCIGSGVI 380
Q C GSG I
Sbjct: 354 QHHYCYGSGEI 364
>gi|345876865|ref|ZP_08828626.1| putative high frequency lysogenization protein [endosymbiont of
Riftia pachyptila (vent Ph05)]
gi|344226065|gb|EGV52407.1| putative high frequency lysogenization protein [endosymbiont of
Riftia pachyptila (vent Ph05)]
Length = 381
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 215/371 (57%), Gaps = 22/371 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDSSVA LL G+ ++K W ++D + + C D+ A +V D
Sbjct: 23 KIIVGMSGGVDSSVAALLLLEQGYQVEGLFMKNWEEDDTKEY---CSAATDLADASSVAD 79
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
Q+ +PL V+ + +YW+ V +Y ++EYR GRTPNPDVLCN IKF AF+D A+S++
Sbjct: 80 QLGIPLHSVNFSADYWERVFAYFLDEYRAGRTPNPDVLCNREIKFKAFLDYALSTLGASR 139
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+++ S+ EY+ L+ + D+ KDQTYFL L Q QL R FPLG ++K +V
Sbjct: 140 IATGHYARLIESNG--EYQ---LQRAVDENKDQTYFLYMLGQPQLSRSYFPLGSLAKTQV 194
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + N +KDS GICF+G+ KF +F++R++ G I E G+ +G+H G +
Sbjct: 195 RELAEKAGFSNHKKKDSTGICFIGERKFRDFLSRYLPANPGAIQTPE-GETIGQHSGLMY 253
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + G PW+VV KD++ N++ V++ + R G L W+
Sbjct: 254 YTLGQRQGLGIGGIKGTAEAPWFVVAKDLQRNLLIVAQGHQHPLLMSRSLVAGQLHWIGA 313
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P+ + ++RH +C +E G++ V + + GQ FY G
Sbjct: 314 RTPQLPLSCKARIRHRQPLQSC-----WIEAQGKDGCRVHFDTPQRAVTPGQSIVFYSGP 368
Query: 373 RCIGSGVILES 383
C+G G I+ES
Sbjct: 369 NCLG-GAIIES 378
>gi|337754115|ref|YP_004646626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella sp. TX077308]
gi|336445720|gb|AEI35026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella sp. TX077308]
Length = 359
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 211/370 (57%), Gaps = 23/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDSSV+ LL G+ T ++K W ++D ++F C E+D+ A+AVCD
Sbjct: 5 KIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDDF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFKHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYA--KVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA KV + Q K D+ KDQTYFL L Q QLK+ +FP+G I K +
Sbjct: 122 ATGHYARTKVAEDGSVQLVK------GLDESKDQTYFLYTLGQEQLKQTMFPIGDIEKSK 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + L D+KDS GICF+G+ KF +F+++ + G I + E G +G H G
Sbjct: 176 VREIAKENKLVTFDKKDSTGICFIGERKFKDFLSKFLPAQRGEIHD-ENGIKIGMHDGLM 234
Query: 258 FYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + P PW+ +KD++NNV+ + + + + L W++
Sbjct: 235 YYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLVAVQGHDHPMLFKDTLQAIDLSWVA 294
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G P + R KVR+ +CN+ I EDG N+ E + + GQ FY G
Sbjct: 295 GSAPADSFRCSAKVRYRQKDQSCNVQIN--EDGSVNVV---FDEPQRAITPGQSVVFYDG 349
Query: 372 TRCIGSGVIL 381
C+G G+I+
Sbjct: 350 EVCLGGGIII 359
>gi|423314900|ref|ZP_17292832.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides vulgatus
CL09T03C04]
gi|392681082|gb|EIY74444.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides vulgatus
CL09T03C04]
Length = 354
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 206/372 (55%), Gaps = 25/372 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A L+SGGVDS+V + LL G+ FY+KI D + C EED++ A
Sbjct: 1 MNIAALISGGVDSAVVVHLLCEQGYKPDLFYIKIGMDGDED---LTCTAEEDIELCTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + L ++ L +YW NVV+Y I++ + G TPNPDV+CN IKFG F + +D
Sbjct: 58 RKYGLSLNIIDLHRQYWDNVVAYAIDKVKRGLTPNPDVMCNKLIKFGCFEQEAGHL-YDK 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA ++ L ++D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYASILEKDG-----KIWLGTAQDPVKDQTDFLAQIDYLQISKLMFPLGGLMKNEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI ++EF+ R +GE EG I+E ETG +G H G+WF
Sbjct: 172 RDIARIAKLPSAQRKDSQGICFLGKINYNEFLCRFLGEKEGDIIEMETGKRIGTHKGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGL 313
+TIGQR+GL L GGPW+V+ KD+ N+++VS Y Y D F + G
Sbjct: 232 HTIGQRKGLGLGGGPWFVIRKDIDENIIYVSHGYDTDKQYGTDFALHDFHFITEDLWKGA 291
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P ++S K+RH F L E +N+ + QG+A GQF Y
Sbjct: 292 PSADVS---FKIRHTDTFMKGILTRE------DNLFRIHSHVPLQGIAPGQFGVLYDKNA 342
Query: 374 --CIGSGVILES 383
C+GSG I S
Sbjct: 343 EICVGSGEITLS 354
>gi|317505238|ref|ZP_07963170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella salivae DSM 15606]
gi|315663667|gb|EFV03402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella salivae DSM 15606]
Length = 366
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 215/371 (57%), Gaps = 21/371 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++A+LLSGGVDSSV L + S G FY+ I +E E W +C EED++ A A
Sbjct: 8 KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMIGPEEKEE--W-DCTSEEDLEMATA 64
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
+ + D L+V+ EYW V Y +++ + G TPNPDV+CN IKFGAF + I +
Sbjct: 65 LTKRFDCQLKVIDCHKEYWSKVTRYTMDKVKMGFTPNPDVMCNRLIKFGAFDEKIG-FNY 123
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ S + L S D +KDQT FL+ + QLK+ IFP+G K
Sbjct: 124 DLIATGHYAQTEWSDGRK-----WLITSPDPIKDQTDFLAQIYDWQLKKAIFPIGNFEKN 178
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VRK A + L N R+DSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 179 DVRKIAEREHLINAKRRDSQGICFLGDIDYNEYVRRYLGECVGDVIELETGKKIGEHKGL 238
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS----G 312
WF+TIGQR+GL GGPW+VV+KDV++N+++VS Y ++ F++ ++ G
Sbjct: 239 WFHTIGQRKGLGFGGGPWFVVKKDVEHNILYVSHGYDPETAYKQSFKIHDFHAVTFCSEG 298
Query: 313 LP-PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
+ P+ R+ K+RH P + L E GE ++ G+A GQF Y
Sbjct: 299 VALPDLPERITFKIRHTPEYLPAKL-----EKTGEQSYIIHADSKIHGVAPGQFCVIYDA 353
Query: 372 T--RCIGSGVI 380
RC GSG I
Sbjct: 354 EHHRCYGSGEI 364
>gi|150002999|ref|YP_001297743.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482]
gi|294775633|ref|ZP_06741142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides vulgatus PC510]
gi|319642281|ref|ZP_07996940.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_1_40A]
gi|345518172|ref|ZP_08797627.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 4_3_47FAA]
gi|205810256|sp|A6KXF7.1|MNMA1_BACV8 RecName: Full=tRNA-specific 2-thiouridylase MnmA 1
gi|149931423|gb|ABR38121.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides vulgatus ATCC 8482]
gi|254836440|gb|EET16749.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 4_3_47FAA]
gi|294450575|gb|EFG19066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides vulgatus PC510]
gi|317386137|gb|EFV67057.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_1_40A]
Length = 354
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 206/372 (55%), Gaps = 25/372 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A L+SGGVDS+V + LL G+ FY+KI D + C EED++ A
Sbjct: 1 MNIAALISGGVDSAVVVHLLCEQGYKPDLFYIKIGMDGDED---LTCTAEEDIELCTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + L ++ L +YW NVV+Y I++ + G TPNPDV+CN IKFG F + +D
Sbjct: 58 RKYGLSLNIIDLHRQYWDNVVAYAIDKVKRGLTPNPDVMCNKLIKFGCFEQEAGHL-YDK 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA ++ L ++D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYASILEKDG-----KIWLGTAQDPVKDQTDFLAQIDYLQISKLMFPLGGLMKNEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI ++EF+ R +GE EG I+E ETG +G H G+WF
Sbjct: 172 RDIARIAKLPSAQRKDSQGICFLGKINYNEFLRRFLGEKEGDIIEMETGKRIGTHKGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGL 313
+TIGQR+GL L GGPW+V+ KD+ N+++VS Y Y D F + G
Sbjct: 232 HTIGQRKGLGLGGGPWFVIRKDIDENIIYVSHGYDTDKQYGTDFALHDFHFITEDLWKGA 291
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P ++S K+RH F L E +N+ + QG+A GQF Y
Sbjct: 292 PSADVS---FKIRHTDTFMKGILTRE------DNLFRIHSHVPLQGIAPGQFGVLYDKNA 342
Query: 374 --CIGSGVILES 383
C+GSG I S
Sbjct: 343 EICVGSGEITLS 354
>gi|345883914|ref|ZP_08835336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. C561]
gi|345043242|gb|EGW47318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. C561]
Length = 364
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 216/372 (58%), Gaps = 16/372 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
+G ++AVLLSGGVDSSV + G FY+KI +E + W +C EED++ A
Sbjct: 7 EGKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKIGPEEKED--W-DCNSEEDLEMATL 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + LEV+ EYW V Y +E+ + G TPNPDV+CN IKFGAF D ++
Sbjct: 64 VARRFGCKLEVIDCHKEYWDQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHDY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QLK+ IFP+G K
Sbjct: 123 DLIATGHYAQTEWIDGRK-----WLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + +L N RKDSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 178 EVREIAERENLINAHRKDSQGICFLGNIDYNEYVRRYLGEQIGDVIELETGKKIGEHKGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL L GGPW+V++KDV N+++VS Y ++ F + +L+
Sbjct: 238 WFHTIGQRKGLGLGGGPWFVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHFLTEGITT 297
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
++ K+RH P ++ + + DG ++ +++ G+A GQF Y Q RC
Sbjct: 298 LPEKITFKIRHTPEYHPAT--VNQLSDGR---CLIHSAKNIHGVAPGQFCVVYDEQHHRC 352
Query: 375 IGSGVILESWDD 386
GSG I S D+
Sbjct: 353 FGSGEIALSVDE 364
>gi|357042747|ref|ZP_09104450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella histicola F0411]
gi|355369126|gb|EHG16528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella histicola F0411]
Length = 360
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 214/366 (58%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + G FY+KI +E E W +C EED++ A A
Sbjct: 7 KDKRIAVLLSGGVDSSVVVYEFARQGLHPDCFYIKIGPEEKEE--W-DCNSEEDLEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + + L+V+ EYW+ V Y + + + G TPNPDV+CN IKFGAF D +
Sbjct: 64 VARRFNCNLQVIDCHKEYWEQVTHYTMAKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHAY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + + L S D VKDQT FL+ + QLK+ IFP+G K
Sbjct: 123 DLIATGHYAQTEWINGRK-----WLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKN 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 178 EVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQVGDVIELETGKKIGEHKGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL L GGPW+V++KDV N+++VS Y ++ F + +L+ +
Sbjct: 238 WFHTIGQRKGLGLGGGPWFVIKKDVTQNILYVSHGYDPETAYKKDFPLHDFHFLTEGVTD 297
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
++ K+RH P ++ +E + DG ++ +E G+A GQF Y Q +C
Sbjct: 298 LPEKITFKIRHTPEYHPAT--VEQLSDGK---CLIHSAESIHGVAPGQFCVVYDEQHHKC 352
Query: 375 IGSGVI 380
GSG I
Sbjct: 353 YGSGEI 358
>gi|325854955|ref|ZP_08171671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella denticola CRIS 18C-A]
gi|325483933|gb|EGC86873.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella denticola CRIS 18C-A]
Length = 360
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/363 (41%), Positives = 209/363 (57%), Gaps = 16/363 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++AVLLSGGVDSSV + G FY++I +E E W +C EEDM+ A AV
Sbjct: 10 RIAVLLSGGVDSSVVVYEFARLGLHPDCFYIRIGPEEKEE--W-DCNSEEDMEMATAVAR 66
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF D ++D +
Sbjct: 67 RFGCRLQVVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHDYDLI 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ + L S D VKDQT FL+ + QLK+ +FP+G K+EVR
Sbjct: 126 ATGHYAQTEWIDGRK-----WLTTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYEKDEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L N RKDSQGICFLG I ++E+V R++GE G I+E ETG +G+H G WF+
Sbjct: 181 RIAEREHLINAHRKDSQGICFLGNIDYNEYVRRYLGEQTGDIIELETGKKIGEHRGLWFH 240
Query: 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEIS 319
TIGQR+GL L GGPW+VV KDV N+++VS Y + F + +L+ E
Sbjct: 241 TIGQRKGLGLGGGPWFVVRKDVDKNILYVSHGYDPETAYKSNFPLHDFHFLTEGITELPE 300
Query: 320 RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRCIGS 377
++ K+RH P ++ +E + DG ++ + G+A GQF Y RC GS
Sbjct: 301 KITFKIRHTPEYHPAR--VEQLPDGK---CIIHSAGRIHGVAPGQFCVVYDEHHHRCYGS 355
Query: 378 GVI 380
G I
Sbjct: 356 GEI 358
>gi|345863844|ref|ZP_08816051.1| tRNA-specific 2-thiouridylase MnmA [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345124954|gb|EGW54827.1| tRNA-specific 2-thiouridylase MnmA [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 365
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 215/371 (57%), Gaps = 22/371 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDSSVA LL G+ ++K W ++D + + C D+ A +V D
Sbjct: 7 KIIVGMSGGVDSSVAALLLLEQGYQVEGLFMKNWEEDDTKEY---CSAATDLADASSVAD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
Q+ +PL V+ + +YW+ V +Y ++EYR GRTPNPDVLCN IKF AF+D A+S++
Sbjct: 64 QLGIPLHSVNFSADYWERVFAYFLDEYRAGRTPNPDVLCNREIKFKAFLDYALSTLGASR 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+++ S+ EY+ L+ + D+ KDQTYFL L Q QL R FPLG ++K +V
Sbjct: 124 IATGHYARLIESNG--EYQ---LQRAVDENKDQTYFLYMLGQPQLSRSYFPLGSLAKTQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + N +KDS GICF+G+ KF +F++R++ G I E G+ +G+H G +
Sbjct: 179 RELAEKAGFSNHKKKDSTGICFIGERKFRDFLSRYLPANPGAIQTPE-GETIGQHSGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + G PW+VV KD++ N++ V++ + R G L W+
Sbjct: 238 YTLGQRQGLGIGGIKGTAEAPWFVVAKDLQRNLLIVAQGHQHPLLMSRSLVAGQLHWIGA 297
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P+ + ++RH +C +E G++ V + + GQ FY G
Sbjct: 298 RTPQLPLSCKARIRHRQPLQSC-----WIEAQGKDGCRVHFDTPQRAVTPGQSIVFYSGP 352
Query: 373 RCIGSGVILES 383
C+G G I+ES
Sbjct: 353 NCLG-GAIIES 362
>gi|386814536|ref|ZP_10101754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiothrix nivea DSM 5205]
gi|386419112|gb|EIJ32947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiothrix nivea DSM 5205]
Length = 369
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 206/370 (55%), Gaps = 21/370 (5%)
Query: 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
G +V V +SGGVDSSVA LL G+ ++K W ++D E++ C D+ A+AV
Sbjct: 2 GKRVMVGMSGGVDSSVAALLLLQQGYQVEGLFMKNWEEDDTEDY---CSAAVDLADAQAV 58
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
+Q+ +PL + EYW V +Y ++EYR GRTPNPD++CN IKF AF+D + D
Sbjct: 59 ANQLGIPLHTRNFATEYWDRVFTYFLDEYRAGRTPNPDIMCNKEIKFRAFLDLALELGAD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSK-DKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
Y+A+GHYA++ H E SV L D KDQTYFL L Q QL+R +FP+G + K
Sbjct: 119 YIATGHYARITH-----EPDGSVQMLKGVDDNKDQTYFLYTLQQHQLQRSLFPVGELEKS 173
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
VR A + +KDS GICF+G+ KF +F+ R + G I+ A+ G+ +GKH G
Sbjct: 174 RVRDIALEVGFSTARKKDSTGICFIGERKFRDFLQRFLPARPGGIVTAD-GEVIGKHHGL 232
Query: 257 WFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+YT+GQRQGL + G PW+VV+KD+ NN + V++ + + L W+
Sbjct: 233 MYYTLGQRQGLGIGGRKDATEAPWFVVDKDMSNNRLIVTQGHQHALLMKHFLLASQLHWI 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+G PP + + K+R+ C + + +N V + + + GQ FYQ
Sbjct: 293 AGKPPADRFGCKAKIRYRQTEETCEVRLLP-----DNSCDVCFPDAQRAITPGQSIVFYQ 347
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 348 GDTCLGGGII 357
>gi|90579124|ref|ZP_01234934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photobacterium angustum S14]
gi|90439957|gb|EAS65138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photobacterium angustum S14]
Length = 371
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 210/372 (56%), Gaps = 19/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A +E DY
Sbjct: 65 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + +A+ E KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYTRRSFPTAEGE-KPQMLR-GVDNNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ +++ G I+ A+ G +G+H G +
Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGKIVTADEGKEIGEHQGLMY 242
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G WYVV+KDVKNN++ V + K L W+
Sbjct: 243 HTLGQRKGLHIGGQKGGNGHEDAWYVVDKDVKNNLLIVGQGKDHPRLKSNGLIAKQLHWV 302
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P E K R+ C ++ V+D E I V+ E + GQ A FY
Sbjct: 303 DRQPIRETMACTVKTRYRQQDIPCTII--PVDD--ETIKVI-FDEPQIAVTPGQSAVFYN 357
Query: 371 GTRCIGSGVILE 382
G C+G G+I E
Sbjct: 358 GEICLGGGIIEE 369
>gi|119470125|ref|ZP_01612891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alteromonadales bacterium TW-7]
gi|392537667|ref|ZP_10284804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas marina mano4]
gi|119446546|gb|EAW27820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alteromonadales bacterium TW-7]
Length = 366
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 144/379 (37%), Positives = 216/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDNNKDQSYFLYTLSHEHIAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I+K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI + E G+ +G
Sbjct: 173 DIAKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVIEDTE-GNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KDV+ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ NC L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRVGPKGTTRCTVKTRYRQEDINCTLLV-----GDDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYAQEVCLGGGII 361
>gi|381157771|ref|ZP_09867004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiorhodovibrio sp. 970]
gi|380879129|gb|EIC21220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiorhodovibrio sp. 970]
Length = 363
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 208/375 (55%), Gaps = 29/375 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V LSGGVDS+VA LL G+ A ++K W ++D + C ED+ A+AV +
Sbjct: 6 RVLVGLSGGVDSAVATHLLIEQGYQVEALFMKNWEEDDAPGY---CAAAEDLADAQAVTE 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +PL V+ EYW V + EYR RTPNPD+LCN+ IKF AF+D ++ D++
Sbjct: 63 RLGIPLRTVNFATEYWDRVFEQFLAEYRALRTPNPDILCNSEIKFRAFLDHALTLGADWI 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V+H AD+ + L L++D KDQTYFL L + QL R++FPL ++K E+R
Sbjct: 123 ATGHYARVMH-QADR----ASLYLARDANKDQTYFLHRLDREQLGRVLFPLADLTKPEIR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A L N +KDS GICF+G+ +F++F+AR++ G I E G LG+H G +Y
Sbjct: 178 AMAESLGLANASKKDSTGICFIGERRFADFLARYLPREPGPI-ETPEGQVLGEHQGLAYY 236
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKW 309
TIGQRQGL + G PW+V KD NV+ V + LF G L W
Sbjct: 237 TIGQRQGLGIGGQAGAAEAPWFVAAKDPAKNVLIVVQG----GNHPLLFAEGLSGEQLHW 292
Query: 310 LSGLPPEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
+SG PP C++RH C L+ H + V + + + GQ A F
Sbjct: 293 ISGAPPAPAPFDCLCRLRHRQPLQACTLVEYH-----KGHCQVHFATPQRAVTPGQSAVF 347
Query: 369 YQGTRCIGSGVILES 383
Y G RC+G +I +
Sbjct: 348 YYGDRCLGGCIITSA 362
>gi|71030526|ref|XP_764905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Theileria parva strain Muguga]
gi|68351861|gb|EAN32622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
putative [Theileria parva]
Length = 693
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 154/399 (38%), Positives = 219/399 (54%), Gaps = 50/399 (12%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+VAVL+SGGVDSS+AL L+ S AFYLK+ D N C D+ YA VC+
Sbjct: 298 RVAVLVSGGVDSSLALWLMKSRAFDVHAFYLKV---NDLSNGPGLCA-SNDISYAMQVCN 353
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ V L V+ + Y ++++S ++++YR G PNPDVLCN+RIKFG F+ FDYV
Sbjct: 354 ILGVTLHVLPFSKAYSEHILSGVLDDYRKGEVPNPDVLCNSRIKFGEFLRMAIDWGFDYV 413
Query: 140 ASGHYAKVV-----------------HSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQ 182
ASGHYA + +S + YK L LS D +KDQTYFLS L+Q Q
Sbjct: 414 ASGHYATLCDDFFTKEQIKSPSSLNGSTSINGYYKIKRLCLSNDTLKDQTYFLSRLTQNQ 473
Query: 183 LKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVIL 242
+ +LIFP+G ++K +VR+FA LP D+KDS G+CFL + S+++ + +GE +G I+
Sbjct: 474 MSKLIFPIGHLTKSQVREFAKTVGLPTFDKKDSFGLCFLEDLDISQYLTKSLGESQGPIV 533
Query: 243 EAETGDFLGKHWGFWFYTIGQRQGL-------RLPGGPWYVVEKDVKNNVVFVSRNY--- 292
E ET +G H G + +TIGQ++ + + P YVV+KD+ N ++VS NY
Sbjct: 534 EYETNKVIGTHNGLYNFTIGQKKTINSFLNPKHVGSTPKYVVKKDIATNTLYVSSNYNDD 593
Query: 293 -YSFDKK-RRLFRVGSLKWLSGLPPEEISRLQ-----------CKVRHGPGFYNCNLMIE 339
Y+ K R F+V + W E I+++Q K+RH P + C +
Sbjct: 594 FYTNPKGIRSSFKVKDMFWNVPDYKELINKIQSEGSDDNFKFKVKLRHTPNYSQCAINF- 652
Query: 340 HVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
DG E A V L D G++ GQ+ FY CIGS
Sbjct: 653 ---DGDE--ATVFLKHPDTGISTGQYCVFYADNYCIGSA 686
>gi|254368479|ref|ZP_04984496.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp.
holarctica FSC022]
gi|157121373|gb|EDO65574.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp.
holarctica FSC022]
Length = 359
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 215/368 (58%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ T EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ + +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 122 ATGHYAQ-IRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 237 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIKLSWVAGM 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 297 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 351
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 352 CLGGGVII 359
>gi|281423882|ref|ZP_06254795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oris F0302]
gi|281401970|gb|EFB32801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oris F0302]
Length = 366
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 152/371 (40%), Positives = 209/371 (56%), Gaps = 21/371 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++A+LLSGGVDSSV L + S G FY+ I +E E W +C EED++ A A
Sbjct: 8 KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMIGPEEKEE--W-DCTSEEDLEMATA 64
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
+ ++ L+V+ EYW V Y +++ + G TPNPDV+CN IKFGAF + I ++
Sbjct: 65 LTNRFGCQLKVIDCHKEYWSQVTRYTMDKVKAGFTPNPDVMCNRLIKFGAFDEKIGH-DY 123
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ + QL++ IFP+G K
Sbjct: 124 DLIATGHYAQTEWIDGRK-----WLTTSPDPVKDQTDFLAQIYGWQLRKTIFPIGHFEKN 178
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N R+DSQGICFLG I ++E+V R++GE G ++E ETG +G+H G
Sbjct: 179 EVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRYLGESVGDVIELETGKKIGEHKGL 238
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLS 311
WF+TIGQR+GL GGPW+VV+KDV+ N+++VS Y Y D K F +
Sbjct: 239 WFHTIGQRKGLGFSGGPWFVVKKDVERNILYVSHGYDPETAYKLDFKIHDFHATTYCPEG 298
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
PE R+ K+RH P + L E GE V+ G+A GQF Y
Sbjct: 299 TALPELPERITFKIRHTPEYLPATL-----ERIGEKTYVIHADNKIHGVAPGQFCVVYDA 353
Query: 372 TR--CIGSGVI 380
C GSG I
Sbjct: 354 HHHYCYGSGEI 364
>gi|359448367|ref|ZP_09237905.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20480]
gi|358045776|dbj|GAA74154.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20480]
Length = 366
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 144/379 (37%), Positives = 215/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDNNKDQSYFLYTLSHEHIAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I+K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI E G+ +G
Sbjct: 173 DIAKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVI-EDTDGNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KDV+ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ NC L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRVGPKGTTRCTVKTRYRQEDINCTLLV-----GDDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYAQEVCLGGGII 361
>gi|373461294|ref|ZP_09553036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella maculosa OT 289]
gi|371952848|gb|EHO70681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella maculosa OT 289]
Length = 366
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 209/371 (56%), Gaps = 21/371 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K + A+LLSGGVDSSV L + G FY+KI +E E W +C EED++ A A
Sbjct: 8 KNRRTALLLSGGVDSSVVLYEMVIHGLRPDCFYIKIGPEEKEE--W-DCTSEEDLEMATA 64
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
+ + L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF D +
Sbjct: 65 MTARFGCKLDVVDCHKEYWGQVTRYTMEKVKAGYTPNPDVMCNRLIKFGAF-DEKMGHGY 123
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + + L S D VKDQT FL+ + QL++ +FP+G K
Sbjct: 124 DLIATGHYAQTEWINGRK-----WLTTSPDPVKDQTDFLAQIEGWQLRKALFPIGHFEKN 178
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N R+DSQGICFLG I ++E+V R++GE G ++E ETG +G H G
Sbjct: 179 EVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRYLGEQVGDVIELETGKKIGTHKGL 238
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP-- 314
WF+TIGQR+GL GGPW+VV+KDV N+++VS Y ++ F V + P
Sbjct: 239 WFHTIGQRKGLGFGGGPWFVVKKDVAQNILYVSHGYDPATAYKQTFNVHDFHATTYCPDG 298
Query: 315 ---PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY-- 369
PE R+ K+RH P + + +E G+N ++ G+A GQF Y
Sbjct: 299 VAQPELPLRVTFKIRHTPEY-----LPAAIEQTGDNTYMIHADSKVHGVAPGQFCVVYDE 353
Query: 370 QGTRCIGSGVI 380
+ RC GSG I
Sbjct: 354 RHHRCYGSGEI 364
>gi|89255515|ref|YP_512876.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica LVS]
gi|156501449|ref|YP_001427514.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|290954256|ref|ZP_06558877.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica URFT1]
gi|422938038|ref|YP_007011185.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica FSC200]
gi|423049819|ref|YP_007008253.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica F92]
gi|122501358|sp|Q2A5X5.1|MNMA_FRATH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|166234852|sp|A7N9A5.1|MNMA_FRATF RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205821924|sp|Q0BP64.2|MNMA_FRATO RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|89143346|emb|CAJ78513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. holarctica LVS]
gi|156252052|gb|ABU60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. holarctica FTNF002-00]
gi|407293189|gb|AFT92095.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica FSC200]
gi|421950541|gb|AFX69790.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica F92]
Length = 359
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 214/368 (58%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ T EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 122 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 237 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 297 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 351
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 352 CLGGGVII 359
>gi|115314034|ref|YP_762757.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica OSU18]
gi|254366943|ref|ZP_04982980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. holarctica 257]
gi|115128933|gb|ABI82120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. holarctica OSU18]
gi|134252770|gb|EBA51864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. holarctica 257]
Length = 381
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 214/368 (58%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 27 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 83
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ T EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 84 SIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 143
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 144 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 199
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 200 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 258
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 259 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 318
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 319 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 373
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 374 CLGGGVII 381
>gi|113969944|ref|YP_733737.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-4]
gi|123029751|sp|Q0HJT7.1|MNMA_SHESM RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|113884628|gb|ABI38680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella sp. MR-4]
Length = 372
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 207/374 (55%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF+D A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I AE G+ +GK
Sbjct: 179 LEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLPAQPGNIETAE-GEVIGK 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD+K NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMLVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P E S++ K R+ C L +++D N V E + GQ A
Sbjct: 298 LHWVDRKGPAEGSQIVVKTRYRQQDIPCTLT--YLDD---NTLKVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>gi|327313269|ref|YP_004328706.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Prevotella denticola F0289]
gi|326945092|gb|AEA20977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella denticola F0289]
Length = 360
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 207/366 (56%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K ++AVLLSGGVDSSV + FY++I +E E W +C EEDM+ A A
Sbjct: 7 KNRRIAVLLSGGVDSSVVVYEFARLDLHPDCFYIRIGPEEKEE--W-DCNSEEDMEMATA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V + L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF D +
Sbjct: 64 VARRFGCRLQVVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHNY 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA+ + L S D VKDQT FL+ L QLK+ +FP+G K+
Sbjct: 123 DLIATGHYAQTEWIDGRK-----WLTTSPDPVKDQTDFLAQLYDWQLKKALFPIGHYEKD 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L N RKDSQGICFLG I ++E+V R++GE G I+E ETG +G+H G
Sbjct: 178 EVRRIAEREHLINAHRKDSQGICFLGNIDYNEYVHRYLGEQTGDIIELETGKKIGEHRGL 237
Query: 257 WFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
WF+TIGQR+GL L GGPW+VV KDV N+++VS Y + F + +L+ E
Sbjct: 238 WFHTIGQRKGLGLGGGPWFVVRKDVDKNILYVSHGYDPETAYKSNFPLHDFHFLTEGITE 297
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTRC 374
++ K+RH P ++ E + DG ++ + G+A GQF Y RC
Sbjct: 298 LPEKITFKIRHTPEYHPAR--AEQLPDGK---CIIHSAGRIHGVAPGQFCVVYDEHHHRC 352
Query: 375 IGSGVI 380
GSG I
Sbjct: 353 YGSGEI 358
>gi|220935011|ref|YP_002513910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219996321|gb|ACL72923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 364
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 207/370 (55%), Gaps = 20/370 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+ V +SGGVDSSVA LL AG+ ++K W ++D + C ED+ AKAVC+
Sbjct: 7 IIVGMSGGVDSSVAALLLIQAGYRVEGLFMKNWEEDDEPGY---CAAAEDLADAKAVCEV 63
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+++PL V+ + +YW V S+ ++EY+ GRTPNPD+LCN IKF AF+D + D +A
Sbjct: 64 LEIPLHKVNFSADYWHRVFSHFLDEYQAGRTPNPDILCNKEIKFRAFLDYARQLGADGIA 123
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA++ ++ + L +D KDQTYFL L Q QL + +FP+G + K VR
Sbjct: 124 TGHYARI-----GRDGESYTLLAGRDANKDQTYFLYTLGQEQLSKSLFPIGELEKPRVRD 178
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A LP +KDS GICF+G+ +F +F+ ++ G I++ E G+ LG+H G +YT
Sbjct: 179 LARAHGLPVFAKKDSTGICFIGERRFRDFLQTYLPARPGEIVDPE-GNRLGEHQGLMYYT 237
Query: 261 IGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+GQRQGL + G PWYVV+KD+ +N + V++ + R L W+SG
Sbjct: 238 LGQRQGLGIGGVHDAGEAPWYVVDKDMAHNRLIVAQGHDHPLMHHRGLEAQDLHWVSGEA 297
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P E + ++RH C VE + V E + +A GQ FYQ RC
Sbjct: 298 PREAFSCRARIRHRQPLQACR-----VEPHADGRVRVLFDEAQRAIAPGQSVVFYQEDRC 352
Query: 375 IGSGVILESW 384
+G G+I+ +
Sbjct: 353 LGGGIIVRRF 362
>gi|117920194|ref|YP_869386.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. ANA-3]
gi|166235083|sp|A0KW11.1|MNMA_SHESA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|117612526|gb|ABK47980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella sp. ANA-3]
Length = 372
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 206/374 (55%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF+D A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I AE G+ +GK
Sbjct: 179 LEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLPAQPGNIETAE-GEIIGK 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G + T+GQR+GL + G PWYVV+KD+K NV+ V + + V
Sbjct: 238 HQGLMYQTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMLVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P E S++ K R+ C L +++D N V E + GQ A
Sbjct: 298 LHWVDRKGPAEGSQIVVKTRYRQQDIPCTLT--YLDD---NTLKVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>gi|127512489|ref|YP_001093686.1| tRNA-specific 2-thiouridylase MnmA [Shewanella loihica PV-4]
gi|166235081|sp|A3QD79.1|MNMA_SHELP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|126637784|gb|ABO23427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella loihica PV-4]
Length = 371
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 211/378 (55%), Gaps = 29/378 (7%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P+ G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 6 PNPNGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + +S + V D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVRRSDASGQSQMLRGV-----DGNKDQSYFLYTLSHEQIARSLFPVGE 177
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF++F+ + G I AE G+ +G+
Sbjct: 178 LEKSEVREIAKEMGLVTHDKKDSTGICFIGERKFTDFLRTFLPAQPGKIETAE-GEVIGE 236
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG- 305
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + K RL VG
Sbjct: 237 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLVVGQG----GKHPRLMSVGF 292
Query: 306 ---SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
L W+ P + +++ K R+ C L E G + I V+ E +
Sbjct: 293 YADQLHWVDRTGPNDGAKITVKTRYRQQDVACTLTYE----GDDRIKVI-FDEPVAAVTP 347
Query: 363 GQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 348 GQSAVFYDGEVCLGGGII 365
>gi|114047179|ref|YP_737729.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-7]
gi|122944742|sp|Q0HW33.1|MNMA_SHESR RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|113888621|gb|ABI42672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella sp. MR-7]
Length = 372
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 207/374 (55%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF+D A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I AE G+ +GK
Sbjct: 179 LEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLPAQPGNIETAE-GEVIGK 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD+K NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMFVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P E S++ K R+ C L +++D N V E + GQ A
Sbjct: 298 LHWVDRKGPVEGSQIVVKTRYRQQDIPCTLT--YLDD---NTLKVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGDVCLGGGII 366
>gi|392544606|ref|ZP_10291743.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas piscicida JCM 20779]
Length = 366
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 144/379 (37%), Positives = 215/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 1 MSDNSHIKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV + +EEY+ GRTPNPD++CN IKF AF+ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEHFLEEYKAGRTPNPDIMCNKEIKFKAFLQFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ DY+A+GHY + A+++ K +L D+ KDQ+YFL LS + + +FP+G
Sbjct: 118 EALGADYIATGHYVR----RAERDGKFVMLR-GDDENKDQSYFLYTLSHEHIAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVRK A L D+KDS GICF+G+ KF +F+A+ + GVI + E G+ +G
Sbjct: 173 EIEKPEVRKIAEDQGLITHDKKDSTGICFIGERKFKDFLAKFLPAQPGVIEDCE-GNHVG 231
Query: 252 KHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + RLF G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGSKEGNGEPWYVVDKDIERNVLVVGQG----KNHPRLFSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRVGPQGTTRCTVKTRYRQTDIPCTLLV-----GQDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYANDVCLGGGII 361
>gi|89073381|ref|ZP_01159905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photobacterium sp. SKA34]
gi|89050868|gb|EAR56342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photobacterium sp. SKA34]
Length = 371
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 211/372 (56%), Gaps = 19/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A +E DY
Sbjct: 65 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + +A+ + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYTRRSFPTAEGD-KPQMLR-GVDNNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ +++ G I+ A+ G +G+H G +
Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGKIVTADEGKEIGEHQGLMY 242
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G WYVV+KDVK+N++ V + K L W+
Sbjct: 243 HTLGQRKGLLIGGQKGGNGHEDAWYVVDKDVKSNLLIVGQGKDHPRLKSNGLIAKQLHWV 302
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+ P E K R+ C ++ V+D E I V+ E + GQ A FY
Sbjct: 303 ARKPIRETMACTVKTRYRQQDIPCTII--PVDD--ETIKVI-FDEPQIAVTPGQSAVFYN 357
Query: 371 GTRCIGSGVILE 382
G C+G G+I E
Sbjct: 358 GEICLGGGIIEE 369
>gi|187930950|ref|YP_001890934.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254371318|ref|ZP_04987320.1| hypothetical protein FTBG_01100 [Francisella tularensis subsp.
tularensis FSC033]
gi|379717913|ref|YP_005306249.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis TIGB03]
gi|379726516|ref|YP_005318702.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis TI0902]
gi|421756352|ref|ZP_16193269.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 80700075]
gi|71658014|sp|Q5NEF9.2|MNMA_FRATT RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205816649|sp|B2SEJ7.1|MNMA_FRATM RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205822328|sp|Q14FW2.2|MNMA_FRAT1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|151569558|gb|EDN35212.1| hypothetical protein FTBG_01100 [Francisella tularensis subsp.
tularensis FSC033]
gi|187711859|gb|ACD30156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. mediasiatica FSC147]
gi|377827965|gb|AFB81213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis TI0902]
gi|377829590|gb|AFB79669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis TIGB03]
gi|409084814|gb|EKM84976.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 80700075]
Length = 359
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 213/368 (57%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 122 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 237 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 297 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 351
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 352 CLGGGVII 359
>gi|387823675|ref|YP_005823146.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Francisella cf. novicida 3523]
gi|328675274|gb|AEB27949.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Francisella cf. novicida 3523]
Length = 358
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 211/368 (57%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 4 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 61 SIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G + K +VR
Sbjct: 121 ATGHYAQ-TRQAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNVEKSKVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 177 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 235
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD+ NNV+ + + ++ + L W++G+
Sbjct: 236 TIGQRQGLGIGGVKNRPEVPWFAAKKDLANNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P R KVR+ +C +E +DG N V E + + GQ FY
Sbjct: 296 APAGKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDEPQRAITPGQSVVFYIDDV 350
Query: 374 CIGSGVIL 381
C+G G+I+
Sbjct: 351 CLGGGIII 358
>gi|56708687|ref|YP_170583.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110671159|ref|YP_667716.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis FSC198]
gi|254875562|ref|ZP_05248272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis MA00-2987]
gi|56605179|emb|CAG46310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis SCHU S4]
gi|110321492|emb|CAL09693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis FSC198]
gi|254841561|gb|EET19997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis MA00-2987]
Length = 381
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 213/368 (57%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 27 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 83
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 84 SIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 143
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 144 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 199
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 200 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 258
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 259 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 318
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 319 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 373
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 374 CLGGGVII 381
>gi|385795403|ref|YP_005831809.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis NE061598]
gi|282159938|gb|ADA79329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis NE061598]
Length = 378
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 213/368 (57%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 24 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 80
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 81 SIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 140
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 141 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 196
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 197 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 255
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 256 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 315
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 316 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 370
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 371 CLGGGVII 378
>gi|407803326|ref|ZP_11150162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alcanivorax sp. W11-5]
gi|407022695|gb|EKE34446.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alcanivorax sp. W11-5]
Length = 369
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 197/367 (53%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++ V +SGGVDSSVA LL AG+ ++K W ++D + C ED+ A V
Sbjct: 13 RIIVGMSGGVDSSVAAYLLKQAGYQVEGLFMKNWNEDDGTEY---CTAREDLLDAMQVAG 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+D+ L + EYW V + + EYR GRTPNPD+LCN +KF AF+D ++ D +
Sbjct: 70 VLDIELHTANFASEYWDRVFEHFLAEYRAGRTPNPDILCNKEVKFRAFLDHALTLGADGI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ HS A P+ L + D KDQTYFL + Q R +FPLG I+K EVR
Sbjct: 130 ATGHYAQANHSVA-----PAELLRAVDTNKDQTYFLHAVGGEQFSRTLFPLGHIAKPEVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + N +KDS GICF+G+ +F +F+ R++ GVI E + G +G+H G +Y
Sbjct: 185 RIAAECGFANHKKKDSTGICFIGERRFKDFLQRYLPAQPGVI-EDDHGHRIGEHSGLMYY 243
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + G PWYV KD+ NV+ + + R G + W+SG
Sbjct: 244 TLGQRQGLGIGGRADADESPWYVAAKDLTRNVLIAVQGHDHPLLHSRRLDSGPVHWISGA 303
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + L K R+ +C L E + DG V + + GQ FY G R
Sbjct: 304 PPAMPATLTAKTRYRQPDQHCTL--EPLADG---RVRVHFDTPQRAVTPGQSVVFYDGPR 358
Query: 374 CIGSGVI 380
C+G VI
Sbjct: 359 CLGGAVI 365
>gi|335429501|ref|ZP_08556399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Haloplasma contractile SSD-17B]
gi|334889511|gb|EGM27796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Haloplasma contractile SSD-17B]
Length = 377
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 142/376 (37%), Positives = 207/376 (55%), Gaps = 20/376 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW---FQEDFENFWTE----CPWEEDMK 72
KV + LSGGVDSSVA LL G+ A +++ W D T CP E D +
Sbjct: 7 KVVLGLSGGVDSSVAAYLLKEQGYDVEAVFMRNWDSALNNDILGNPTVEDEICPQEVDFE 66
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AK V DQ+++PL V+ EYW NV +Y + EY+ GRTPNPD++CN +KF AF+D
Sbjct: 67 DAKKVADQLEIPLHKVNFVKEYWDNVFTYFLNEYKKGRTPNPDIMCNKEVKFKAFLDYAE 126
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S++ DY+A GHYA+V H S L D KDQTYFL L+Q QL+R +FP+G
Sbjct: 127 SLDCDYIAMGHYARVRHDK-----NQSYLLRGVDNNKDQTYFLCQLTQKQLERSLFPIGH 181
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + +L +KDS G+CF+G+ F+EF+ ++ EG ++ + G+ G
Sbjct: 182 LEKTEVREIADKLNLATAKKKDSTGVCFIGERNFTEFLQNYLPAKEGKMMTLD-GEVKGT 240
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR+GL + G PW+V+ KD++ NV+ V + ++ + V + W+
Sbjct: 241 HIGLMYYTIGQRKGLGIGGAGEPWFVIGKDLEQNVLLVGQGFHHENLYSDRCTVSDVNWI 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S P K R Y + ++ +N +V ED + + GQ A FY
Sbjct: 301 SDEPLTGEKTCTAKFR-----YRQKDIPVKIKWKDKNELIVDFLEDVRAVTPGQAAVFYD 355
Query: 371 GTRCIGSGVILESWDD 386
G C+G G I ++ D
Sbjct: 356 GDTCLGGGFIDAAFKD 371
>gi|399217947|emb|CCF74834.1| unnamed protein product [Babesia microti strain RI]
Length = 680
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 159/426 (37%), Positives = 227/426 (53%), Gaps = 66/426 (15%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KVA+L+SGGVDSSVAL +L S G++ AFYLK + + C ED++YA C+
Sbjct: 260 KVAMLISGGVDSSVALWMLKSQGYNVHAFYLKAFGSDS-----PGCTVAEDIRYATDCCN 314
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
+ VPL ++ + D Y + V+ Y++E YR G TPNPDV+CN +KFG F++ A S FD
Sbjct: 315 VLGVPLHILPVEDVYNRAVMQYMVEGYRAGNTPNPDVICNREVKFGYFLNLATSEFGFDM 374
Query: 139 VASGHYAKV--------VHSSADQE--YKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
VASGHYA++ S+ Q + + LE S KDQTYFLS LS AQL ++I
Sbjct: 375 VASGHYARINPQYFIPPQQSNGTQSSFVRFNELETSYYVNKDQTYFLSRLSSAQLGKMIC 434
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
PLG K+ VR A L + R DS G+CFLG++ +F+ H+GE G I++ ++
Sbjct: 435 PLGVHKKKMVRALAYINGLGTQARDDSMGVCFLGRLDLRQFLKAHLGETPGQIIDYKSKQ 494
Query: 249 FLGKHWGFWFYTIGQRQGLRLP------GGPWYVVEKDVKNNVVFVSRNYYS--FDKK-- 298
+G+H G + YTIGQRQGL + G W+VV KD +N ++V++ Y S F +
Sbjct: 495 VIGQHTGLYNYTIGQRQGLGVSIDHGGEEGGWFVVSKDAASNTLYVTKEYNSRHFTGRSC 554
Query: 299 -RRLFRVGSLKWLSGL------------------PP---EEISRLQ-------------- 322
RR F + ++W + + PP +I +Q
Sbjct: 555 IRRAFSLAHVRWNNPILLNSHGINEADYIKAEWEPPITRRDIKTMQDLTLDRNVASTEKL 614
Query: 323 -CKVRHGPGFYNCNLMIEHVEDGGENIAV---VQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
KVR+G Y L + G+ + L D GLA GQ+AA Y+G CIGSG
Sbjct: 615 FLKVRNGTVLYEAELKLSPPIRKGQGVTQHGWAVLDRSDPGLATGQYAALYRGNICIGSG 674
Query: 379 VILESW 384
+I +S+
Sbjct: 675 IIYQSF 680
>gi|365540121|ref|ZP_09365296.1| tRNA-specific 2-thiouridylase MnmA [Vibrio ordalii ATCC 33509]
Length = 373
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 208/370 (56%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++D+PL ++ EYW NV Y +EEY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLDIPLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + D KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVR--RTFPDGNDKPQMLR-GFDNNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEQQDLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKIQTPE-GLVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGQKGGGGNEEPWYVADKDLKRNVLIAVQGADHPLLKSHGLIASQLHWV 304
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P + K R+ C ++ ++D ENI V+ E + GQ A FYQ
Sbjct: 305 DRTPIQATLSCTVKTRYRQTDIACTII--PIDD--ENIKVI-FDEPQVAVTPGQSAVFYQ 359
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 360 GDVCLGGGII 369
>gi|330446458|ref|ZP_08310110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490649|dbj|GAA04607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 371
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 209/372 (56%), Gaps = 19/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A +E DY
Sbjct: 65 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + +A+ E KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYTRRSFPTAEGE-KPQMLR-GVDNNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF+EF+ +++ G I+ A+ G +G+H G +
Sbjct: 183 RRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGKIVTADEGKEIGEHQGLMY 242
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G WYVV+KDV+NN++ V + K L W+
Sbjct: 243 HTLGQRKGLHIGGQKGGNGHEDAWYVVDKDVENNLLIVGQGKDHPRLKSNGLIAKQLHWV 302
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P E K R+ C ++ V+D E I V+ E + GQ A FY
Sbjct: 303 DRQPIRETMACTVKTRYRQQDIPCTII--PVDD--ETIKVI-FDEPQIAVTPGQSAVFYN 357
Query: 371 GTRCIGSGVILE 382
G C+G G+I E
Sbjct: 358 GEICLGGGIIEE 369
>gi|169334729|ref|ZP_02861922.1| hypothetical protein ANASTE_01135 [Anaerofustis stercorihominis DSM
17244]
gi|169257467|gb|EDS71433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerofustis stercorihominis DSM 17244]
Length = 354
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 147/366 (40%), Positives = 217/366 (59%), Gaps = 28/366 (7%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDS+V+ LL G+ ++K W + D EN EC EED A+AVC ++++P
Sbjct: 1 MSGGVDSTVSAYLLKKQGYDVIGLFMKNWDETD-EN--GECSAEEDYDDARAVCLKLNIP 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYVASGH 143
V+ T EYW NV +Y ++EY+ GRTPNPDVLCN IKF F+D AI+ + DY+A+GH
Sbjct: 58 CYTVNFTKEYWDNVFTYFLDEYKKGRTPNPDVLCNKEIKFKCFLDYAINVLNADYIATGH 117
Query: 144 YAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFAT 203
YAKV H+ + + L +KD+ KDQTYFLS L + QL+R+IFPL + K EVR+ A
Sbjct: 118 YAKVEHTK-----EGTRLLKAKDQHKDQTYFLSLLKEKQLERVIFPLADVEKGEVREIAE 172
Query: 204 QFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQ 263
+ N +KDS GICF+G+ F++F+ ++ G +++ +TG+ G+H G +YT+GQ
Sbjct: 173 REGFRNAKKKDSTGICFIGERNFTQFLQNYLPNQPGDMIDMDTGEKKGEHIGLMYYTLGQ 232
Query: 264 RQGLRLPGGP----WYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLSGLPP 315
R+GL + G WYV +KD+ NN++++ + DK +L++ G + +SG P
Sbjct: 233 RRGLGVGGCGSGERWYVADKDLNNNILYIVQG----DKNPKLYKNGFIATDVNMISGHYP 288
Query: 316 EEISRLQCKVRH-GPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
+ + + RH P L VE E+ A V E+ G+ GQ A FY G C
Sbjct: 289 SDKFECEMRFRHLQP------LKKATVEVIDESTARVIFDEEQSGVTPGQIAVFYDGEVC 342
Query: 375 IGSGVI 380
+G G I
Sbjct: 343 LGGGTI 348
>gi|208780006|ref|ZP_03247349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella novicida FTG]
gi|208744010|gb|EDZ90311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella novicida FTG]
Length = 359
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 213/370 (57%), Gaps = 23/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYA--KVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA +V+ + Q K D KDQTYFL L Q QL++ IFP+G I K +
Sbjct: 122 ATGHYARTRVLEDGSVQLVK------GLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSK 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G
Sbjct: 176 VREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLM 234
Query: 258 FYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++
Sbjct: 235 YYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVA 294
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G+ P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 295 GMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYID 349
Query: 372 TRCIGSGVIL 381
C+G GVI+
Sbjct: 350 DVCLGGGVII 359
>gi|409200141|ref|ZP_11228344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas flavipulchra JG1]
Length = 366
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 215/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K
Sbjct: 1 MSDNSHIKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAADDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV + +EEY+ GRTPNPD++CN IKF AF+ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEHFLEEYKAGRTPNPDIMCNKEIKFKAFLQFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ DY+A+GHY + A+++ K +L D+ KDQ+YFL LS + + +FP+G
Sbjct: 118 EALGADYIATGHYVR----RAERDGKFVMLR-GDDENKDQSYFLYTLSHEHIAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVRK A L D+KDS GICF+G+ KF +F+A+ + GVI + E G+ +G
Sbjct: 173 EIEKPEVRKIAEDQGLITHDKKDSTGICFIGERKFKDFLAKFLPAQPGVIEDCE-GNHVG 231
Query: 252 KHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + RLF G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGSKEGNGEPWYVVDKDIERNVLVVGQG----KNHPRLFSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRVGPQGTTRCTVKTRYRQTDIPCTLLV-----GQDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYANDVCLGGGII 361
>gi|307131188|ref|YP_003883204.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Dickeya dadantii 3937]
gi|306528717|gb|ADM98647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dickeya dadantii 3937]
Length = 370
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/377 (38%), Positives = 209/377 (55%), Gaps = 34/377 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYRVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EYR GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS QL + +FP+G + K +V
Sbjct: 125 IATGHYVR----RKDVDGKSRLLR-GLDGNKDQSYFLYTLSHQQLAQSLFPVGELEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KF +F+AR++ G IL + G +G+H G +
Sbjct: 180 REIAEQLDLATARKKDSTGICFIGERKFRDFLARYLPAQPGPILSVDDGKVMGEHQGLMY 239
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NNV++V++ + + RL VG L
Sbjct: 240 HTLGQRKGLGIGGVKEGGDDPWYVVDKDVANNVLYVAQGH----EHPRLMSVGLIAQQLH 295
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLM---IEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P + R K R+ C L + +E V+ E + GQ
Sbjct: 296 WVDREPLTQPLRCAVKTRYRQADIPCLLTPLDADRIE--------VRFDEPVAAVTPGQS 347
Query: 366 AAFYQGTRCIGSGVILE 382
A FYQG C+G G+I E
Sbjct: 348 AVFYQGEACLGGGIIEE 364
>gi|359438573|ref|ZP_09228585.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20311]
gi|359444146|ref|ZP_09233950.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20439]
gi|358026699|dbj|GAA64834.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20311]
gi|358042095|dbj|GAA70199.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20439]
Length = 366
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 214/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDDNKDQSYFLYTLSHEHIAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I+K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI E G+ +G
Sbjct: 173 DIAKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVI-EDTDGNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KDV+ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQG----KNHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ +C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRVGPQGTTRCTVKTRYRQEDLSCTLLV-----GEDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYANEVCLGGGII 361
>gi|261210711|ref|ZP_05925003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio sp. RC341]
gi|260840196|gb|EEX66776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio sp. RC341]
Length = 371
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 204/370 (55%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++D+PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLDIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPQNGE--KPQMLR-GLDNNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGAEHPLLKSHGLVAAQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C + V G + I V+ E + GQ A FYQG
Sbjct: 305 TPITEPVRCSVKTRYRQSDIACTV----VPVGDDRIKVM-FDEPQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 ICLGGGIIEE 369
>gi|254876064|ref|ZP_05248774.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254842085|gb|EET20499.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 359
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 209/368 (56%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ AD V L D KDQTYFL L Q QLK+ +FP+G I K VR
Sbjct: 122 ATGHYART--KVADDGSVQLVKGL--DDSKDQTYFLYTLGQEQLKQTMFPIGDIEKSRVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF +F+++ + +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + + + L W++G
Sbjct: 237 TIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSWVAGS 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C++ + + DG N+ E + + GQ FY
Sbjct: 297 APADSFRCSAKVRYRQKDQSCSVEVNN--DGSVNVV---FDEPQRAITPGQSVVFYDNDV 351
Query: 374 CIGSGVIL 381
C+G G+I+
Sbjct: 352 CLGGGIII 359
>gi|134302735|ref|YP_001122703.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421752654|ref|ZP_16189673.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis AS_713]
gi|421754518|ref|ZP_16191489.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 831]
gi|421758247|ref|ZP_16195102.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 80700103]
gi|421760072|ref|ZP_16196895.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 70102010]
gi|424675397|ref|ZP_18112303.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 70001275]
gi|166234854|sp|A4J081.1|MNMA_FRATW RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|134050512|gb|ABO47583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis WY96-3418]
gi|409084542|gb|EKM84715.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 831]
gi|409084568|gb|EKM84740.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis AS_713]
gi|409089663|gb|EKM89698.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 70102010]
gi|409090017|gb|EKM90043.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 80700103]
gi|417433930|gb|EKT88913.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 70001275]
Length = 359
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 213/368 (57%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + +Y+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLIKYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 122 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 237 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 297 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 351
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 352 CLGGGVII 359
>gi|81615317|sp|Q6LT18.1|MNMA_PHOPR RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|46912768|emb|CAG19558.1| putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photobacterium profundum SS9]
Length = 377
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 209/381 (54%), Gaps = 19/381 (4%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
L +M KV V +SGGVDSSV+ LL G+ ++K W ++D E + C
Sbjct: 3 LKRNMSDNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNEEY---CSAA 59
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED+ A+AVCD++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF+
Sbjct: 60 EDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFL 119
Query: 129 D-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI 187
+ A +E DY+A GHY + +A+ E KP +L D KDQ+YFL LS Q+ R +
Sbjct: 120 EFADEVLEADYIAMGHYTRRSFPTAEGE-KPKMLR-GVDSNKDQSYFLYTLSHEQIARSL 177
Query: 188 FPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETG 247
FP+G + K EVR+ A + DL +KDS GICF+G+ KF+EF+ +++ G I A+ G
Sbjct: 178 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGKIETADEG 237
Query: 248 DFLGKHWGFWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKR 299
+G+H G ++T+GQR+GL + G WYVV+KD+K NV+ V + K
Sbjct: 238 KVIGEHQGLMYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPRLKS 297
Query: 300 RLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQG 359
L W+ P E K R+ C ++ ++D ENI V+ E
Sbjct: 298 NGLVASQLDWVDRQPIRETMTCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIA 352
Query: 360 LAAGQFAAFYQGTRCIGSGVI 380
+ GQ A FY C+G G+I
Sbjct: 353 VTPGQSAVFYSNEICLGGGII 373
>gi|24374174|ref|NP_718217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
[Shewanella oneidensis MR-1]
gi|30173411|sp|Q8CX40.1|MNMA_SHEON RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|24348681|gb|AAN55661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
[Shewanella oneidensis MR-1]
Length = 372
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 205/374 (54%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D E + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNEDGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A Q L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHEVREIAKQMGLITHDKKDSTGICFIGERKFTEFLGNYLPAQPGNI-ETADGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD+K NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMLVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P S++ K R+ C L +++D N V E + GQ A
Sbjct: 298 LHWVDRKGPINGSQIVVKTRYRQQDIPCTLT--YLDD---NTLKVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>gi|407716430|ref|YP_006837710.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Cycloclasticus sp. P1]
gi|407256766|gb|AFT67207.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cycloclasticus sp. P1]
Length = 365
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 201/367 (54%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ + +SGGVDSSVA L GH T ++K W ++D + C +ED+ A+ V D
Sbjct: 5 KIMIGMSGGVDSSVAALRLLEQGHEVTGLFMKNWDEDDGSEY---CTAKEDLADAQQVSD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L+ V+ EYW NV + EY GRTPNPD+LCN IKF AF+D + + DY+
Sbjct: 62 KLGIELKTVNFAAEYWDNVFEDFLSEYAAGRTPNPDILCNREIKFKAFLDYATELGADYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY ++ Q++ L D KDQ+YFL L Q QL R +FP+G + K VR
Sbjct: 122 ATGHYTQIA-----QQHNQFQLLRGLDNNKDQSYFLYTLGQTQLSRSLFPIGNMEKPAVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + N +KDS GICF+G+ KF +F+ R++ G++ E G+ +G+H G +Y
Sbjct: 177 ELAQKAGFINSRKKDSTGICFIGERKFKDFLQRYLPAQPGLMNTPE-GETIGEHQGLMYY 235
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + G PWYVVEKD+KNN++ V++ + + L W+SG
Sbjct: 236 TLGQRQGLGIGGIKSAAEEPWYVVEKDLKNNILVVAQGHDHTLMQSNTLNASQLSWVSGQ 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
R K R+ C + + G++ +VQ + + + GQ FY
Sbjct: 296 AVSNSFRCTAKTRYRQKDQACQVTLI-----GDDHCLVQFDDPQRAVTPGQSVVFYNNEV 350
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 351 CLGGGII 357
>gi|118496723|ref|YP_897773.1| tRNA-specific 2-thiouridylase MnmA [Francisella novicida U112]
gi|194324030|ref|ZP_03057805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella novicida FTE]
gi|166234853|sp|A0Q454.1|MNMA_FRATN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|118422629|gb|ABK89019.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Francisella novicida U112]
gi|194321927|gb|EDX19410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. novicida FTE]
Length = 359
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 212/370 (57%), Gaps = 23/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYA--KVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA +V+ + Q K D KDQTYFL L Q QL++ IFP+G I K +
Sbjct: 122 ATGHYARTRVLEDGSVQLVK------GLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSK 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + +L D+KDS GICF+G+ KF EF+++ + +G I + E G +G H G
Sbjct: 176 VREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLPAQKGEIHD-ENGIKIGMHDGLM 234
Query: 258 FYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++
Sbjct: 235 YYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVA 294
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G+ P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 295 GMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYID 349
Query: 372 TRCIGSGVIL 381
C+G GVI+
Sbjct: 350 DVCLGGGVII 359
>gi|350552756|ref|ZP_08921950.1| tRNA-specific 2-thiouridylase mnmA [Thiorhodospira sibirica ATCC
700588]
gi|349793065|gb|EGZ46907.1| tRNA-specific 2-thiouridylase mnmA [Thiorhodospira sibirica ATCC
700588]
Length = 378
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 207/376 (55%), Gaps = 27/376 (7%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P + L+V V LSGGVDSSVA LL G ++K W +D + C ED+
Sbjct: 7 PDLRPLRVIVGLSGGVDSSVAAWLLQQQGFVVEGLFMKNWEDDDRDGV---CAAAEDLAD 63
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS 133
A+AVC+Q+++PL V+ +YW V S+ +EEYR GRTPNPD+LCN IKF AF++
Sbjct: 64 ARAVCEQLEIPLHKVNFAQDYWARVFSHFLEEYRAGRTPNPDILCNREIKFRAFLEYALH 123
Query: 134 MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
+ DY+A+GHYA++ S D Y L D KDQ+YFL L Q L + +FPLG +
Sbjct: 124 LGADYIATGHYARI--QSHDGHY---ALHTGLDAGKDQSYFLYTLGQPALSKSLFPLGEL 178
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K VR+ A Q N +KDS GICF+G+ F EF+ R++ G I+ E G +G H
Sbjct: 179 DKSTVRELAMQAGFGNARKKDSTGICFIGERHFREFLQRYLPAQPGEIVTPE-GRVIGSH 237
Query: 254 WGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRL---FRV 304
G +YTIGQRQGL + G PWYVV+K + +N + V++ + D R L +
Sbjct: 238 QGLMYYTIGQRQGLGIGGQKDASETPWYVVDKILADNQLVVAQGH---DHPRLLHTRLKA 294
Query: 305 GSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQ 364
+ W+SG + Q K+R+ C + I H DG VQ ++ + + GQ
Sbjct: 295 HDVHWISGHSLDAPLHCQAKIRYRQQAQPCTV-IPHA-DG----VTVQFAQAQRAITPGQ 348
Query: 365 FAAFYQGTRCIGSGVI 380
FYQ +C+G G+I
Sbjct: 349 SVVFYQQDQCLGGGII 364
>gi|271500468|ref|YP_003333493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dickeya dadantii Ech586]
gi|270344023|gb|ACZ76788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dickeya dadantii Ech586]
Length = 370
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 146/374 (39%), Positives = 206/374 (55%), Gaps = 28/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EYR GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGITLHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDIDGKSRLLR-GLDGNKDQSYFLYTLSHQQLAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A Q DL +KDS GICF+G+ KF +F+AR++ G IL + G +G+H G +
Sbjct: 180 RKIAEQLDLATARKKDSTGICFIGERKFRDFLARYLPAQPGPILSVDDGKVMGEHQGLMY 239
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV +NV++V++ + + RL VG L
Sbjct: 240 HTLGQRKGLGIGGVKEGGDDPWYVVDKDVASNVLYVAQGH----EHPRLMSVGLIAQQLH 295
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C L + V+ E + GQ A F
Sbjct: 296 WVDREPLSAPLRCTVKTRYRQADIPCLLTPLDADR-----IDVRFEEPVAAVTPGQSAVF 350
Query: 369 YQGTRCIGSGVILE 382
YQG C+G G+I E
Sbjct: 351 YQGEVCLGGGIIEE 364
>gi|161936317|ref|YP_129360.2| tRNA-specific 2-thiouridylase MnmA [Photobacterium profundum SS9]
Length = 371
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 206/370 (55%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNEEY---CSAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A +E DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + +A+ E KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYTRRSFPTAEGE-KPKMLR-GVDSNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ +++ G I A+ G +G+H G +
Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGKIETADEGKVIGEHQGLMY 242
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G WYVV+KD+K NV+ V + K L W+
Sbjct: 243 HTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPRLKSNGLVASQLDWV 302
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P E K R+ C ++ ++D ENI V+ E + GQ A FY
Sbjct: 303 DRQPIRETMTCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYS 357
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 358 NEICLGGGII 367
>gi|284007318|emb|CBA72670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Arsenophonus nasoniae]
Length = 364
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 209/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A++VCD
Sbjct: 3 KVIVGMSGGVDSSVSAYLLKQQGYQVAGLFMKNWEEDDNEEY---CAAATDLADAQSVCD 59
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++D+ L V+ EYW NV ++ + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 60 KLDIELHTVNFAAEYWDNVFAHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLAADY 119
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+ + + L D KDQ+YFL L QAQL + +FP+G + K V
Sbjct: 120 IATGHYARCKTVNGRHQ-----LLRGLDNNKDQSYFLYTLDQAQLAQSLFPIGELEKSTV 174
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF +F+AR++ GVI+ + G LG+H G +
Sbjct: 175 RRIAEEIGLITAKKKDSTGICFIGERKFRDFLARYLPAKPGVIITVD-GKILGEHSGLMY 233
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KD+KNN + V++ + RL G +
Sbjct: 234 HTLGQRKGLGIGGVKEANDDPWYVVDKDIKNNRLIVAQGH----NHPRLMSTGLIVQQIH 289
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ E ++ K R+ C I+ + D N +VQ + GQ A F
Sbjct: 290 WINPPALNETNQYTVKTRYRQPDIPCT--IKQLSD---NKIIVQFDYPIAAVTPGQSAVF 344
Query: 369 YQGTRCIGSGVI 380
YQG C+G GVI
Sbjct: 345 YQGEICLGGGVI 356
>gi|392555627|ref|ZP_10302764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas undina NCIMB 2128]
Length = 366
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 214/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDDNKDQSYFLYTLSHEHIAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I+K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI E G+ +G
Sbjct: 173 DIAKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVI-EDTDGNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDIERNVLVVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ +C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRVGPQGTTRCTVKTRYRQEDLSCTLLV-----GEDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYADEVCLGGGII 361
>gi|336399603|ref|ZP_08580403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella multisaccharivorax DSM 17128]
gi|336069339|gb|EGN57973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella multisaccharivorax DSM 17128]
Length = 361
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 153/367 (41%), Positives = 207/367 (56%), Gaps = 24/367 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++AVLLSGGVDSSVA+ L S FY+KI E E W +C EED++ A AV
Sbjct: 11 RIAVLLSGGVDSSVAVYELASRDIHPDCFYIKIGPGEKEE--W-DCNSEEDLEMAAAVAA 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ L+VV EYW V Y +E+ + G TPNPDV+CN IKFGAF D +D +
Sbjct: 68 KYGCKLQVVDCHREYWSRVTKYTMEKVKAGLTPNPDVMCNRLIKFGAF-DEKMGYSYDLI 126
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ + L S D VKDQT FL+ + Q QLK+ +FP+G K EVR
Sbjct: 127 ATGHYAQTEWIDGHK-----WLTTSPDPVKDQTDFLAQIYQWQLKKALFPIGHYVKNEVR 181
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L N RKDSQGICFLG I + E++ R+ GE G ++E ET +G+H G WF+
Sbjct: 182 EIAEREHLINAKRKDSQGICFLGNINYDEYIRRYAGEKTGDVIELETSRKIGEHRGHWFH 241
Query: 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEIS 319
TIGQR+GL L GGPW+VV+KD + N+++VS Y + F + +L+ E ++
Sbjct: 242 TIGQRKGLGLGGGPWFVVKKDAEKNILYVSHGYDPQTAYKSDFLIHGFDFLT----EGVT 297
Query: 320 RL-QC---KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT--R 373
L +C K+RH P + V D G+ + E G+A GQF Y +
Sbjct: 298 SLPECVTFKIRHTPDCHEAT-----VADCGDGSYTIHSKEQIHGVAPGQFCVIYDAEHHK 352
Query: 374 CIGSGVI 380
C GSG I
Sbjct: 353 CYGSGEI 359
>gi|315126737|ref|YP_004068740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas sp. SM9913]
gi|315015251|gb|ADT68589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas sp. SM9913]
Length = 366
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 213/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL L + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDDNKDQSYFLYTLGHEHIAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I+K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI E G+ +G
Sbjct: 173 DIAKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVI-EDTDGNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KDV+ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQG----KNHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ +C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRVGPQGTTRCTVKTRYRQEDLSCTLLV-----GEDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYANEVCLGGGII 361
>gi|167756778|ref|ZP_02428905.1| hypothetical protein CLORAM_02327 [Clostridium ramosum DSM 1402]
gi|237734496|ref|ZP_04564977.1| tRNA-specific 2-thiouridylase mnmA [Mollicutes bacterium D7]
gi|365832496|ref|ZP_09374029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Coprobacillus sp. 3_3_56FAA]
gi|167702953|gb|EDS17532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium ramosum DSM 1402]
gi|229382316|gb|EEO32407.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. D7]
gi|365260441|gb|EHM90398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Coprobacillus sp. 3_3_56FAA]
Length = 377
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 147/385 (38%), Positives = 216/385 (56%), Gaps = 27/385 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW---FQEDFENFWTE----CPWEEDMK 72
+V + LSGGVDS+VA LL G+ +++ W D T CP EED
Sbjct: 4 RVVLGLSGGVDSAVAAYLLKEQGYDVIGVFMRNWDSQLNNDILGNPTNDNDICPQEEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AKAV + + +P++ V EYW +V +Y ++EYR GRTPNPD+LCN IKF AF+D
Sbjct: 64 DAKAVAECLGIPIKRVDFIKEYWDHVFTYFLDEYRKGRTPNPDILCNKHIKFKAFLDFAK 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A+GHYA+V H SV+ D KDQTYFL L+Q QL+ +FPLG
Sbjct: 124 TLNADYIATGHYAQVKHYQG----ADSVMLKGLDNNKDQTYFLCQLNQQQLQNSLFPLGE 179
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
I K EVR+ A + +LP D+KDS GICF+G+ F EF+ +I G +++ ETG+ +G
Sbjct: 180 IDKTEVRRIARELNLPVADKKDSTGICFIGERDFKEFLQNYIPAQAGKMVDIETGNVIGD 239
Query: 253 HWGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL--- 307
H G +YTIGQR+GL + PG W+VV KD NV+++ + D+K L+ G+L
Sbjct: 240 HSGIMYYTIGQRKGLGIGGPGDAWFVVGKDYDKNVLYICQG----DQKDWLYSTGALITD 295
Query: 308 -KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
W++ P I ++ C + + + +E ++ E+ + + + + GQ A
Sbjct: 296 VNWIASTKP--IDKIACNAKFRYRQPDNPIQLEFID---EDTVYLTFDKPIKAVTPGQAA 350
Query: 367 AFYQGTRCIGSGVILESWDDQGFPV 391
FY G C+G G I + D G P+
Sbjct: 351 VFYDGDICLGGGTIETVYKD-GQPI 374
>gi|254372089|ref|ZP_04987582.1| hypothetical protein FTCG_01230 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151569820|gb|EDN35474.1| hypothetical protein FTCG_01230 [Francisella novicida GA99-3549]
Length = 359
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 212/370 (57%), Gaps = 23/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + +Y+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGNYI 121
Query: 140 ASGHYA--KVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA +V+ + Q K D KDQTYFL L Q QL++ IFP+G I K +
Sbjct: 122 ATGHYARTRVLEDGSVQLVK------GLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSK 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + +L D+KDS GICF+G+ KF EF+++ + +G I + E G +G H G
Sbjct: 176 VREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLPAQKGEIHD-ENGIKIGMHDGLM 234
Query: 258 FYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++
Sbjct: 235 YYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVA 294
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G+ P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 295 GMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYID 349
Query: 372 TRCIGSGVIL 381
C+G GVI+
Sbjct: 350 DVCLGGGVII 359
>gi|288555376|ref|YP_003427311.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus
pseudofirmus OF4]
gi|288546536|gb|ADC50419.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
pseudofirmus OF4]
Length = 367
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 143/376 (38%), Positives = 210/376 (55%), Gaps = 27/376 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV +L G+ ++K W D F C ED + VC+
Sbjct: 9 KVVVGMSGGVDSSVTALVLKEQGYDVIGIFMKNWDDTDESGF---CTATEDYEDVIRVCN 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y +EEY+ GRTPNPDV+CN IKF AF++ ++ DYV
Sbjct: 66 QIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHAMALGADYV 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V D E++ L D KDQTYFL+ LSQ QL + +FP+G I K+EVR
Sbjct: 126 ATGHYARV--EEVDGEFQ---LLRGVDSNKDQTYFLNALSQQQLSKTMFPIGHIPKKEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETGDFLGKHWG 255
+ A DL +KDS GICF+G+ F EF++ + GEM+ V G+ G+H G
Sbjct: 181 EKALAADLATAKKKDSTGICFIGERNFKEFLSGFLPAQPGEMQTV-----DGEVKGQHDG 235
Query: 256 FWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
+YT+GQRQGL + G PW+V++KD++ NV+ V + +++ L W+S
Sbjct: 236 LMYYTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGFHNQGLYSEGLEAVHLNWISPT 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P R K R+ ++ + EDGG A+V+ E ++ + GQ FY+G
Sbjct: 296 KPTSEFRCTAKFRYRQDDQGVTVIPQ--EDGG---ALVKFDEPERAITPGQAVVFYEGDV 350
Query: 374 CIGSGVI---LESWDD 386
C+G G I ++ W++
Sbjct: 351 CLGGGTIDRVIKKWEN 366
>gi|385792032|ref|YP_005825008.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676178|gb|AEB27048.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Francisella cf. novicida Fx1]
Length = 359
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 211/370 (57%), Gaps = 23/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYA--KVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA +V+ + Q K D KDQTYFL L Q QL++ IFP+G I K +
Sbjct: 122 ATGHYARTRVLEDGSVQLVK------GLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSK 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + +L D+KDS GICF+G+ KF EF+++ + +G I + E G +G H G
Sbjct: 176 VREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLPAQKGEIHD-ENGIKIGMHDGLM 234
Query: 258 FYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++
Sbjct: 235 YYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVA 294
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G+ P + R KVR+ +C +E +D N V + + + GQ FY
Sbjct: 295 GMAPADKFRCAAKVRYRQKDQSCE--VEVNQDASVN---VTFDQPQRAITPGQSVVFYID 349
Query: 372 TRCIGSGVIL 381
C+G GVI+
Sbjct: 350 DVCLGGGVII 359
>gi|119775197|ref|YP_927937.1| tRNA-specific 2-thiouridylase MnmA [Shewanella amazonensis SB2B]
gi|205816912|sp|A1S7B1.1|MNMA_SHEAM RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|119767697|gb|ABM00268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella amazonensis SB2B]
Length = 377
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 204/368 (55%), Gaps = 21/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K A+AVCD
Sbjct: 18 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDTDEY---CAAAEDLKDAQAVCD 74
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A ++ DY
Sbjct: 75 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 134
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + D + K +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 135 IAMGHYVR----RRDTDGKTEMLR-GIDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 189
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ KF +F+A ++ G I E GD +G+H G +
Sbjct: 190 RRIAEEQGLITHDKKDSTGICFIGERKFKDFLATYLPAQPGNI-ETPEGDIIGRHEGLMY 248
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVV+KD+ NV+ V++ + + RV L W+
Sbjct: 249 HTLGQRKGLGIGGMKNSNDDPWYVVDKDMARNVLVVAQGHEHPRLMSKGMRVNQLHWVDR 308
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P + + + K R+ C + I E V E + GQ A FY G
Sbjct: 309 TGPADGATISVKTRYRQQDIPCTVKIID-----EQTIEVLFDEPVAAVTPGQSAVFYDGE 363
Query: 373 RCIGSGVI 380
C+G G+I
Sbjct: 364 VCLGGGII 371
>gi|336124463|ref|YP_004566511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio anguillarum 775]
gi|335342186|gb|AEH33469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio anguillarum 775]
Length = 373
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 206/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++D+PL ++ EYW NV Y +EEY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLDIPLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPEGND--KPQMLR-GLDNNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLVTAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGLVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGQKGGGGNEDPWYVADKDLKRNVLIAVQGADHPLLKSHGLIASQLHWV 304
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P + K R+ C ++ ++D ENI V+ E + GQ A FYQ
Sbjct: 305 DRTPIQATLSCTVKTRYRQTDIACTII--PIDD--ENIKVI-FDEPQVAVTPGQSAVFYQ 359
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 360 GDVCLGGGII 369
>gi|374336419|ref|YP_005093106.1| tRNA-specific 2-thiouridylase MnmA [Oceanimonas sp. GK1]
gi|372986106|gb|AEY02356.1| tRNA-specific 2-thiouridylase MnmA [Oceanimonas sp. GK1]
Length = 368
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 215/379 (56%), Gaps = 31/379 (8%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M LKV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED++
Sbjct: 1 MSDNSQLKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEY---CSAAEDLR 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTINFAAEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ DY+A+GHY V S D E P +L D KDQ+YFL LS Q+ + +FP+G
Sbjct: 118 EDLGADYIATGHY---VRRSFDDE--PKLLR-GLDGNKDQSYFLYTLSSQQVAKSLFPVG 171
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A Q +L +KDS GICF+G+ KF++F+AR++ G I E G+ +G
Sbjct: 172 ELEKPEVRRIAEQLELVTAKKKDSTGICFIGERKFTDFLARYLPAQPGNI-ETVNGEVIG 230
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+K+V+ NV+ V++ + RL+ G
Sbjct: 231 QHQGLMYHTLGQRKGLGIGGLKNAGDEPWYVVDKEVERNVLVVAQGDHP-----RLYSDG 285
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P E R K R+ C IE V+ + I V+ E +
Sbjct: 286 LIARQLHWVDRRPVTEPLRCTVKTRYRQTDIPCT--IEPVD--ADTIRVI-FDEPQAAVT 340
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FYQG C+G G+I
Sbjct: 341 PGQSAVFYQGEVCLGGGII 359
>gi|288941240|ref|YP_003443480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Allochromatium vinosum DSM 180]
gi|288896612|gb|ADC62448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Allochromatium vinosum DSM 180]
Length = 371
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V LSGGVDS++A L G++ A ++K W ++D E + C ED+ A+AV +
Sbjct: 12 RVIVGLSGGVDSAIAAHRLLEQGYAVEALFMKNWEEDDAEGY---CAAAEDLADARAVAE 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L V+ + EYW V Y + EY+ RTPNPDVLCN IKF AF+D + + +
Sbjct: 69 RLGIRLHTVNFSAEYWDRVFEYFLREYQALRTPNPDVLCNREIKFAAFLDHALGLGAEAI 128
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+VV + A Y L + D KDQTYFL L Q QL R +FPL ++K EVR
Sbjct: 129 ATGHYARVV-ADAQGGYH---LHRAVDADKDQTYFLHLLDQEQLSRALFPLADLTKGEVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L N +KDS GICF+G+ +FS+F+AR++ G I E G LG+H G +Y
Sbjct: 185 ALARRLGLANAAKKDSTGICFIGERRFSDFLARYLPREPGPI-ETPEGVRLGEHHGLAYY 243
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLK----- 308
T+GQRQGL + G PWYV KD NN + V + D + L L+
Sbjct: 244 TLGQRQGLGIGGVSQGREAPWYVAVKDSANNRLIVVQ-----DSRHPLLMSTGLEALQPH 298
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+SG PE R ++RH C L VE G + V+ E + + GQ F
Sbjct: 299 WISGRAPETPFRCLARLRHRQPLQACEL----VEIGADGCR-VRFDEPQRAVTPGQSVVF 353
Query: 369 YQGTRCIGSGVI 380
YQ T C+G VI
Sbjct: 354 YQETECLGGAVI 365
>gi|374625757|ref|ZP_09698173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Coprobacillus sp. 8_2_54BFAA]
gi|373915417|gb|EHQ47188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Coprobacillus sp. 8_2_54BFAA]
Length = 377
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/385 (38%), Positives = 215/385 (55%), Gaps = 27/385 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW---FQEDFENFWTE----CPWEEDMK 72
+V + LSGGVDS+VA LL G+ +++ W D T CP EED
Sbjct: 4 RVVLGLSGGVDSAVAAYLLKEQGYDVIGVFMRNWDSQLNNDILGNPTNDNDICPQEEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AKAV + + +P++ V EYW +V +Y ++EYR GRTPNPD+LCN IKF AF+D
Sbjct: 64 DAKAVAECLGIPIKRVDFIKEYWDHVFTYFLDEYRKGRTPNPDILCNKHIKFKAFLDFAK 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A+GHYA+V H SV+ D KDQTYFL L+Q QL+ +FPLG
Sbjct: 124 TLNADYIATGHYAQVKHYQG----ADSVMLKGLDNNKDQTYFLCQLNQQQLQNSLFPLGE 179
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
I K EVR+ A + +LP D+KDS GICF+G+ F EF+ +I G +++ ETG+ +G
Sbjct: 180 IDKTEVRRIARELNLPVADKKDSTGICFIGERDFKEFLQNYIPAQAGKMVDIETGNVIGD 239
Query: 253 HWGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL--- 307
H G +YTIGQR+GL + PG W+VV KD NV+++ + D+K L+ G+L
Sbjct: 240 HSGIMYYTIGQRKGLGIGGPGDAWFVVGKDYDKNVLYICQG----DQKDWLYSTGALITD 295
Query: 308 -KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
W+ P I ++ C + + + +E ++ E+ + + + + GQ A
Sbjct: 296 VNWIPSTKP--IDKIACNAKFRYRQPDNPIQLEFID---EDTVYLTFDKPIKAVTPGQAA 350
Query: 367 AFYQGTRCIGSGVILESWDDQGFPV 391
FY G C+G G I + D G P+
Sbjct: 351 VFYDGDICLGGGTIETVYKD-GQPI 374
>gi|386828469|ref|ZP_10115576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Beggiatoa alba B18LD]
gi|386429353|gb|EIJ43181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Beggiatoa alba B18LD]
Length = 358
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 204/368 (55%), Gaps = 20/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDSSV LL G+ + ++K W ++D + C ED++ AKAVC+
Sbjct: 4 KIIVGISGGVDSSVTALLLKQQGYDVSGLFMKNWEEDDTATY---CSAAEDLRDAKAVCE 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++D+PL V+ EYW NV + ++E++ GRTPNPDVLCN +KF F++ + +
Sbjct: 61 RLDIPLHTVNFATEYWDNVFEHCLQEFQAGRTPNPDVLCNREVKFKVFLEHAMRLGGQRI 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D EY+ L D KDQ+YFL L Q+QL + +FP+G I K +VR
Sbjct: 121 ATGHYTR--QRCVDGEYQ---LLKGLDPSKDQSYFLYLLGQSQLAQSLFPIGEIHKNQVR 175
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+A Q L D+KDS GICF+G+ F F+ R++ G +E GD++G H G +Y
Sbjct: 176 AYAEQAGLITHDKKDSTGICFIGERPFKSFLERYLPAQRGR-METPDGDYVGDHDGVMYY 234
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G WYVV KD+ NN + V++ + R+ + L W+SG
Sbjct: 235 TIGQRQGLNIGGRATGSGEAWYVVAKDIPNNRLIVAQGHNHPLLFRQTLQAEQLHWISGH 294
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P R K R+ C I +E+ + V + + + AGQ FYQG
Sbjct: 295 APTIPYRCYAKTRYRQPDQACR--ITTLEN---DRCEVHFDQPQRAITAGQSVVFYQGEV 349
Query: 374 CIGSGVIL 381
C+G G+I+
Sbjct: 350 CLGGGIIV 357
>gi|441504973|ref|ZP_20986965.1| tRNA-specific 2-thiouridylase MnmA [Photobacterium sp. AK15]
gi|441427555|gb|ELR65025.1| tRNA-specific 2-thiouridylase MnmA [Photobacterium sp. AK15]
Length = 370
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/370 (38%), Positives = 208/370 (56%), Gaps = 20/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNEEY---CSAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A +E DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + + E KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYTRRSFPTQEGE-KPQMLR-GVDNNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF+EF+++++ G I AE G +G+H G +
Sbjct: 183 RRIAEEQGLVTAKKKDSTGICFIGERKFTEFLSKYLPAQPGKIETAE-GKEIGEHQGLMY 241
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PWYVV+KDV+ NV+ V + K L W+
Sbjct: 242 HTLGQRKGLHIGGQKGGNGSEDPWYVVDKDVERNVLIVGQGKDHPRLKSEGLIASQLHWV 301
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P E + K R+ C ++ ++D ENI V+ E + GQ A FY
Sbjct: 302 DRQPIRETLKCTVKTRYRQQDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYN 356
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 357 GDVCMGGGII 366
>gi|392548132|ref|ZP_10295269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas rubra ATCC 29570]
Length = 366
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 215/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 1 MSDNSQIKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ DY+A+GHY + +++ K ++L D KDQ+YFL LS + + +FP+G
Sbjct: 118 EALGADYIATGHYVR----REERDGKFAMLR-GLDNNKDQSYFLYTLSHEHVAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVR+ A + DL ++KDS GICF+G+ KF +F+ + + G I ++E G+ +G
Sbjct: 173 NIEKPEVRRIAEEQDLITHNKKDSTGICFIGERKFKDFLQKFLPAQPGNIEDSE-GNHVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KDV+ NV+ V + RLF G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQG----KNHPRLFSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRVGPQGTTRCTVKTRYRQEDIPCTLLV-----GQDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYLDDVCLGGGII 361
>gi|406915746|gb|EKD54798.1| hypothetical protein ACD_60C00044G0017 [uncultured bacterium]
Length = 362
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 205/368 (55%), Gaps = 23/368 (6%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+ V +SGGVDSSV+ LL AGH ++K W ++D + T+CP DM+ A+AVCDQ
Sbjct: 9 IIVGMSGGVDSSVSALLLKEAGHIVEGVFMKNWEEDDTD---TDCPASRDMEDAQAVCDQ 65
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ + L V+ ++EYW +V ++ + EY+ GRTPNPD+LCN IKF AF+ DY+A
Sbjct: 66 LQIELHRVNFSNEYWTHVFTHFLAEYQAGRTPNPDILCNKEIKFKAFLHYARKRGADYIA 125
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA+ ++S L +D KDQ+YFL L Q QL +FPLG ++KE VRK
Sbjct: 126 TGHYARKQNTSE--------LLKGRDLNKDQSYFLYALDQEQLAHSLFPLGDLTKESVRK 177
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + N +KDS GICF+G+ KF F+ ++ GVI E G +G+H G FYT
Sbjct: 178 LAAKAGFKNHAKKDSTGICFIGERKFKTFLNDYLPSKPGVI-ETTDGTIVGQHDGLMFYT 236
Query: 261 IGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
GQRQGL++ G PWYVV+KD+ NV+ V++ + + W+SG
Sbjct: 237 HGQRQGLKIGGLKNSSEAPWYVVKKDLIRNVLIVAQGAENPLLYAHSLIANQIHWISGNL 296
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + K R+ C +I ++ E + E + + GQ FY+G C
Sbjct: 297 PAFPLTISAKTRYRQKDQAC--IIYPLD---EKQYKIDFKEPQRAITPGQSVVFYEGDAC 351
Query: 375 IGSGVILE 382
+G G+I++
Sbjct: 352 LGGGIIIK 359
>gi|297584733|ref|YP_003700513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus selenitireducens MLS10]
gi|297143190|gb|ADH99947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus selenitireducens MLS10]
Length = 371
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 202/367 (55%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++ V +SGGVDSSV LL G+ ++K W +D + F C ED + VC+
Sbjct: 11 RIVVGMSGGVDSSVTAHLLKEQGYEVIGIFMKNW--DDTDEFGV-CTATEDYEDVIRVCN 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+D+P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF+D ++ DYV
Sbjct: 68 QLDIPYYAVNFEKQYWDKVFTYFLDEYKSGRTPNPDVMCNKEIKFKAFLDHAMTLGADYV 127
Query: 140 ASGHYAKVVHSSADQEYKPSVLEL--SKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYAKV H+ P ++L KD+ KDQTYFL+ LSQ QL+ ++FPLG I K
Sbjct: 128 ATGHYAKVSHT-------PDGVKLLRGKDRNKDQTYFLNALSQDQLRHVLFPLGDIEKPR 180
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + L +KDS GICF+G+ F EF++ ++ G +E G+ G H G
Sbjct: 181 VREIAEEAGLATAGKKDSTGICFIGERNFKEFLSEYLPAQPGN-METLDGEVKGTHDGLM 239
Query: 258 FYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
+YT+GQRQGL + G PW+V++KD+ NV+ V + ++ + + W++G P
Sbjct: 240 YYTLGQRQGLGIGGSGEPWFVIDKDLSRNVLLVGQGFHHPALYSEGLKADGVNWVAGSAP 299
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
E K R+ + +E DG + E ++ + GQ FY C+
Sbjct: 300 AERFHCTVKTRYRQQDRGATVTVE--PDGS---VTLMFDEAERAVTPGQAVVFYDDEICL 354
Query: 376 GSGVILE 382
G G I E
Sbjct: 355 GGGTINE 361
>gi|167626941|ref|YP_001677441.1| tRNA-specific 2-thiouridylase MnmA [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189040504|sp|B0TW32.1|MNMA_FRAP2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|167596942|gb|ABZ86940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 359
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 208/370 (56%), Gaps = 23/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+ + A+AVCD
Sbjct: 5 KIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQHIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYA--KVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA KV+ + Q K D KDQTYFL L Q QLK+ +FP+G I K
Sbjct: 122 ATGHYARTKVIDDGSVQLVK------GLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKSR 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + +L D+KDS GICF+G+ KF +F+++ + +G I + E G +G H G
Sbjct: 176 VREIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLPAQKGEIHD-ENGIKIGMHDGLM 234
Query: 258 FYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + P PW+ +KD++NNV+ + + + + L W++
Sbjct: 235 YYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSWVA 294
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G P + R KVR+ C++ + + DG N+ E + + GQ FY
Sbjct: 295 GSAPADSFRCSAKVRYRQKDQPCSVEVNN--DGSVNVV---FDEPQRAITPGQSVVFYDN 349
Query: 372 TRCIGSGVIL 381
C+G G+I+
Sbjct: 350 DVCLGGGIII 359
>gi|336311790|ref|ZP_08566749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella sp. HN-41]
gi|335864672|gb|EGM69750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella sp. HN-41]
Length = 372
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 202/374 (54%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K +VR+ A + DL D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHQVREIAKEMDLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSSDDPWYVVDKDLERNVLIVGQGGHHPRLMSKGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ L P + + K R+ C L E+ V E + GQ A
Sbjct: 298 LHWVDRLGPVDGCHISVKTRYRQQDVPCTLTYSD-----ESTLRVIFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>gi|444378826|ref|ZP_21178016.1| tRNA-specific 2-thiouridylase MnmA [Enterovibrio sp. AK16]
gi|443677168|gb|ELT83859.1| tRNA-specific 2-thiouridylase MnmA [Enterovibrio sp. AK16]
Length = 370
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/381 (37%), Positives = 214/381 (56%), Gaps = 28/381 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+
Sbjct: 1 MSDNSSKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAQAVCDKLGITLHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFAD 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+E DY+A GHY + + QE + + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 118 EVLEADYIAMGHYVRRTFPT--QEGEKAQMLRGLDSNKDQSYFLYTLSHDQVARSLFPVG 175
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A + DL +KDS GICF+G+ KF++F+++++ G+I E GD +G
Sbjct: 176 DLEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLSKYLPAQPGII-ETVDGDEIG 234
Query: 252 KHWGFWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
+H G ++T+GQR+GL + G PWYVV+KDV+ NV+ V++ + RLF
Sbjct: 235 EHQGLMYHTLGQRKGLHIGGQKGGNGNEAPWYVVDKDVERNVLIVAQGH----DHPRLFS 290
Query: 304 ----VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQG 359
G L W+ E + K R+ +C IE ++ G+ I V+ E
Sbjct: 291 KGLVAGQLHWVDRDTITEPLKCTVKTRYRQQDISCT--IEPID--GDQIKVI-FDEPQSA 345
Query: 360 LAAGQFAAFYQGTRCIGSGVI 380
+ GQ A FY G C+G G+I
Sbjct: 346 VTPGQSAVFYSGDVCLGGGII 366
>gi|30248966|ref|NP_841036.1| tRNA-specific 2-thiouridylase MnmA [Nitrosomonas europaea ATCC
19718]
gi|81584700|sp|Q82VV0.1|MNMA_NITEU RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|30138583|emb|CAD84874.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
protein [Nitrosomonas europaea ATCC 19718]
Length = 362
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/374 (38%), Positives = 208/374 (55%), Gaps = 24/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ T ++K W ++D + + C +D A +V D
Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYDVTGLFMKNWEEDDTDEY---CSSRQDFLDAASVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+D+PLEVV+ + EY + V + ++EY+ GRTPNPDVLCN+ IKF AF+D ++ D++
Sbjct: 62 ILDIPLEVVNFSTEYRERVFNLFLKEYQAGRTPNPDVLCNSEIKFRAFLDHALNLGADWI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V + + +L K D KDQ+YFL L+Q QL IFP+G + K E
Sbjct: 122 ATGHYAQVHETDG-------LFQLLKGEDGNKDQSYFLYRLNQQQLSHTIFPIGHLYKRE 174
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VRK A + LPN +KDS GICF+G+ F EF+ R++ G I + +G+H G
Sbjct: 175 VRKIAREHRLPNSTKKDSTGICFIGERPFREFLNRYLPANPGEIHTLDD-QVVGEHLGVM 233
Query: 258 FYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + G PW+V KD+K NV++V + + R L W+S
Sbjct: 234 YYTIGQRQGLGIGGTRQGSEQPWFVSGKDIKKNVLYVVQGHDHPALLRSSLTAADLSWIS 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G PP + K+R+ C I H E + + + G+ GQ Y+
Sbjct: 294 GTPPHQNWVYAAKIRYRQTDAPC--AITHFE---HDSCQIGFAAPQWGITPGQSVVVYES 348
Query: 372 TRCIGSGVILESWD 385
C+G GVI+ S D
Sbjct: 349 KVCLGGGVIIGSND 362
>gi|375130667|ref|YP_004992767.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio furnissii NCTC 11218]
gi|315179841|gb|ADT86755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio furnissii NCTC 11218]
Length = 372
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 200/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + + KP +L D KDQ+YFL L Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVR--RTFPEHGEKPQMLR-GLDGNKDQSYFLYTLGHEQVARSLFPVGELEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV EKD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKDGSEDPWYVAEKDLKRNVLIAVQGADHPLLKSNGLIASQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
LP E R K R+ C V EN V E + GQ A FYQG
Sbjct: 305 LPMTEPMRCTVKTRYRQTDIQCT-----VTPVDENTIKVMFDEPQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 VCLGGGIIEE 369
>gi|359452150|ref|ZP_09241505.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20495]
gi|358050744|dbj|GAA77754.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20495]
Length = 366
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 213/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAADDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDNNKDQSYFLYTLSHEHIGQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI E G+ +G
Sbjct: 173 DIEKTEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVI-EDTDGNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLIVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ +C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRIGPKGTTRCTVKTRYRQEDLSCTLLV-----GEDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYAEDVCLGGGII 361
>gi|350546603|ref|ZP_08915981.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Mycoplasma iowae 695]
gi|349503841|gb|EGZ31406.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Mycoplasma iowae 695]
Length = 368
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 212/374 (56%), Gaps = 23/374 (6%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW-----FQEDFENFWTECPWEEDMKYAK 75
+ V +SGGVDSSV +L AG +++ W + +FE+ + C D AK
Sbjct: 5 IVVGMSGGVDSSVTALILKKAGFKVIGLFMQNWDNLVNNELNFESSLSNCSASYDYNDAK 64
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSM 134
VC+++D+PL + EYW V + I++Y+ G+TPNPDVLCN IKF F+ A+ +
Sbjct: 65 VVCEKLDIPLYKIDFIKEYWDKVFTKFIDDYKSGKTPNPDVLCNKYIKFDLFIKHALKTF 124
Query: 135 EFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
DY+A+GHYAK+ S+ +Y L S DK KDQTYFL+ LSQAQ+ +IFPL +S
Sbjct: 125 NADYIATGHYAKIKKDSSGTKY----LCESFDKNKDQTYFLNQLSQAQIANVIFPLANLS 180
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
KE VR+ A ++DL N D+KDS GICF+G+ +F+A +I E EG I++ T + +G H
Sbjct: 181 KECVREIAKKYDLINWDKKDSTGICFIGERDIKKFLANYIDEKEGDIIDITTNEKIGTHK 240
Query: 255 GFWFYTIGQRQGLRLPGGP--WYVVEKDVKNNVVFVSR--NYYSFDKKRRLFRVGSLKWL 310
G YTIGQR+G+ L G +V +KDV+ N+++V+ N S+ + W+
Sbjct: 241 GVHLYTIGQRKGMNLSGNKKRQFVCKKDVEKNIIYVTDKLNDSSY-LMSNYCELTDFNWI 299
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S +P + +++ + RH NC I G+ + + + + GQ+A Y+
Sbjct: 300 SKIPYSD--QVEVRFRHTQAKQNCRFKI-----FGDKVYLF-YENKSESVTVGQYAVIYK 351
Query: 371 GTRCIGSGVILESW 384
C+G G I ++W
Sbjct: 352 NGICLGGGTISQTW 365
>gi|317128230|ref|YP_004094512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cellulosilyticus DSM 2522]
gi|315473178|gb|ADU29781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cellulosilyticus DSM 2522]
Length = 367
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 208/375 (55%), Gaps = 30/375 (8%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
++ ++V V +SGGVDSSVA LL G+ ++K W +D + F C ED
Sbjct: 6 KQNIRVVVGMSGGVDSSVAAYLLKQEGYQVIGIFMKNW--DDTDEFGV-CTATEDYNDVI 62
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
VC+Q+D+P V+ EYW V +Y + EYR GRTPNPDV+CN IKF AF+D S+
Sbjct: 63 RVCNQLDIPYYAVNFEKEYWDKVFTYFLNEYRAGRTPNPDVMCNKEIKFKAFLDHAMSLG 122
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
DYVA+GHYA+V HS E + D+ KDQTYFL+ LS+ QLK ++FP+G I K
Sbjct: 123 ADYVATGHYARVRHSDNGVELLRGI-----DENKDQTYFLNALSEDQLKHVLFPIGEIEK 177
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
VR+ A + L +KDS GICF+G+ F EF+++++ G ++ G+ G H G
Sbjct: 178 PRVREIAKEAHLATATKKDSTGICFIGERNFKEFLSQYLPAQRGE-MQTLDGEVKGYHDG 236
Query: 256 FWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
+YT+GQRQGL + G PW+V++KD+ N++ V + Y+ + SGL
Sbjct: 237 LMYYTLGQRQGLGIGGAGEPWFVIDKDLDKNILLVGQGYHH-----------PALYSSGL 285
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVE-DGGENIAV-------VQLSEDDQGLAAGQF 365
E+++ + + G ++C + + D G +++ V E ++ + GQ
Sbjct: 286 IAEDVNWINQHLIKGKKEFHCTAKFRYRQKDQGVTVSIMNDGQVKVIFDEQERAITPGQS 345
Query: 366 AAFYQGTRCIGSGVI 380
FY G C+G GVI
Sbjct: 346 VVFYDGEVCLGGGVI 360
>gi|325847124|ref|ZP_08169950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481096|gb|EGC84141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 369
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 222/378 (58%), Gaps = 29/378 (7%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
+K +KV V +SGGVDSSVA LL G+ + ++K W +ED EN C E D + A
Sbjct: 6 KKDIKVIVGVSGGVDSSVAALLLKEEGYDVSGIFMKNWDEED-EN--GVCTAEVDYEDAV 62
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
VC+Q+ +P ++ EY+ V SY ++EY+ GRTPNPD++CN IKF AF+D +
Sbjct: 63 KVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLG 122
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
DY+A+GHYA+V SS + + + D KDQTYFLS LSQ Q+K ++FP+G + K
Sbjct: 123 ADYLATGHYARVDRSSGETKMLRGI-----DSNKDQTYFLSQLSQDQIKDVLFPVGNLDK 177
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
+EVRK A + +L D+KDS GICF+G+ F+EF++ ++ EG I++ + G+ +GKH+G
Sbjct: 178 KEVRKIAKENNLATADKKDSTGICFIGERNFNEFLSNYLPAKEGNIVDTD-GNIMGKHYG 236
Query: 256 FWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR---VGSLKWL 310
++TIGQR+GL + G W+V KD++ N + V + +LF +GS L
Sbjct: 237 LMYHTIGQRRGLGIGGEGEAWFVCGKDLEKNELIVCQG----KNNEKLFSNRLIGS--NL 290
Query: 311 SGLPPEEISR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
S + E + + CK R+ N ++ I ++DG I + + + GQ A
Sbjct: 291 SSISAEGLKKEFDCTCKFRYRQKDINSHVKI--LDDGKVEIRY----DKTKAVTPGQAAV 344
Query: 368 FYQGTRCIGSGVILESWD 385
FY G C+GS +I E ++
Sbjct: 345 FYDGEVCLGSCIIDEVYN 362
>gi|386714916|ref|YP_006181239.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halobacillus halophilus DSM 2266]
gi|384074472|emb|CCG45965.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halobacillus halophilus DSM 2266]
Length = 370
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 204/370 (55%), Gaps = 16/370 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M K +V V +SGGVDSSVA LL G+ ++K W D C ED +
Sbjct: 1 MKEPKDTRVVVGMSGGVDSSVAALLLKEQGYDVVGIFMKNWDDTDENGV---CTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+D+P V+ +YW V +Y +EEY+ GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVIRVCNQLDIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLDHAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ DY+A+GHYA+V ++ E + D+ KDQTYFL+ L+Q L++++FPLG
Sbjct: 118 SLGADYLATGHYAQVQENNGVHEMLRGI-----DRNKDQTYFLNQLTQEMLEKVMFPLGH 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K++VR+ A Q DL +KDS GICF+G+ F EF++ ++ G +E G+ G+
Sbjct: 173 LEKKQVREIAEQHDLATAKKKDSTGICFIGERNFKEFLSEYLPAQPGN-METLDGEVKGQ 231
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YT+GQRQGL + G PW+VV K+V+ N+++V + ++ W
Sbjct: 232 HEGLMYYTLGQRQGLGIGGAGDPWFVVGKNVEENILYVGQGFHHDALYSDGLIASEANWT 291
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+G PEE K R+ + ++ ++ + DG + E ++ + GQ FY
Sbjct: 292 TGHGPEEAMECTAKFRYRQ--EDSHVTVQPMTDGRWKVI---FHEPERAITPGQAVVFYD 346
Query: 371 GTRCIGSGVI 380
G C+G I
Sbjct: 347 GEVCLGGATI 356
>gi|90413208|ref|ZP_01221203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photobacterium profundum 3TCK]
gi|90325760|gb|EAS42218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photobacterium profundum 3TCK]
Length = 371
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 206/370 (55%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNEEY---CSAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A +E DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + +A+ E KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYTRRSFPTAEGE-KPKMLR-GVDGNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ +++ G I A+ G +G+H G +
Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGKIETADEGKVIGEHQGLMY 242
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G WYVV+KD+K NV+ V + K L W+
Sbjct: 243 HTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPRLKSNGLVASQLDWV 302
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P + K R+ C ++ ++D ENI V+ E + GQ A FY
Sbjct: 303 DRQPIRQPMTCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYS 357
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 358 NEICLGGGII 367
>gi|414069369|ref|ZP_11405363.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. Bsw20308]
gi|410808172|gb|EKS14144.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. Bsw20308]
Length = 366
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 213/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAADDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDNNKDQSYFLYTLSHEHIGQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI E G+ +G
Sbjct: 173 DIEKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVI-EDTDGNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLIVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ +C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRIGPKGTTRCTVKTRYRQEDLSCTLLV-----GEDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYAEDVCLGGGII 361
>gi|77360631|ref|YP_340206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas haloplanktis TAC125]
gi|123588218|sp|Q3IH16.1|MNMA_PSEHT RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|76875542|emb|CAI86763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas haloplanktis TAC125]
Length = 366
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 214/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAADDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDDNKDQSYFLYTLSHEHIGQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I+K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI E G+ +G
Sbjct: 173 DIAKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVI-EDTDGNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLIVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ +C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRIGPKGTTRCTVKTRYRQEDLSCTLLV-----GEDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYAEDVCLGGGII 361
>gi|359433692|ref|ZP_09224012.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20652]
gi|357919671|dbj|GAA60261.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20652]
Length = 366
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 213/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAADDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDNNKDQSYFLYTLSHEHIGQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI E G+ +G
Sbjct: 173 DIEKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVI-EDTDGNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLIVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ +C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRIGPKGTTRCTVKTRYRQEDLSCTLLV-----GEDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYAKDVCLGGGII 361
>gi|323490019|ref|ZP_08095240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Planococcus donghaensis MPA1U2]
gi|323396315|gb|EGA89140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Planococcus donghaensis MPA1U2]
Length = 371
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 204/363 (56%), Gaps = 16/363 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W D EN C ED + VC+
Sbjct: 9 RVVVGMSGGVDSSVAAYLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVIRVCN 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y +EEY+ GRTPNPDV+CN IKF AF++ S+ DY+
Sbjct: 66 QIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHALSLGADYL 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V H+ E + + KD KDQTYFL+ L Q QL +++FP+G + K++VR
Sbjct: 126 ATGHYAQVEHA----ENGETKMLRGKDNNKDQTYFLNQLDQHQLSKVMFPIGHMEKKKVR 181
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L +KDS GICF+G+ F EF+ +++ G +E G +G H G +Y
Sbjct: 182 EIALEAELATATKKDSTGICFIGERNFKEFLGQYLPAQPGQ-METLEGVKMGTHDGLMYY 240
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQRQGL + G PW+V+ KD++ NV++V +N + +L + S PP
Sbjct: 241 TIGQRQGLGIGGAGDPWFVIGKDLERNVLYVGQNIHHDALFSDSLTAVNLSFTSNTPPSG 300
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
I K R Y + VE GE+ A+V +E + + GQ FY G C+G
Sbjct: 301 ILECTAKFR-----YRQQDVGVSVEFKGES-AIVTFAEPVRAITPGQAVVFYDGEECLGG 354
Query: 378 GVI 380
G I
Sbjct: 355 GTI 357
>gi|260768141|ref|ZP_05877075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio furnissii CIP 102972]
gi|260616171|gb|EEX41356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio furnissii CIP 102972]
Length = 372
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 200/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + + KP +L D KDQ+YFL L Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVR--RTFPEHGEKPQMLR-GLDGNKDQSYFLYTLGHEQVARSLFPVGELEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV EKD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKDGSEDPWYVAEKDLKRNVLIAVQGADHPLLKSNGLIASQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+P E R K R+ C V EN V E + GQ A FYQG
Sbjct: 305 MPMTEPMRCTVKTRYRQTDIQCT-----VTPVDENTIKVMFDEPQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 VCLGGGIIEE 369
>gi|238762225|ref|ZP_04623197.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC
33638]
gi|238699572|gb|EEP92317.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC
33638]
Length = 373
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 148/379 (39%), Positives = 208/379 (54%), Gaps = 35/379 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D E K +L D KDQ+YFL LS QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVEGKSRLLR-GLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQHVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCN---LMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P R K R+ C L E VE V+ E + GQ
Sbjct: 295 WVDREPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVE--------VRFDELVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVILESW 384
A FYQG C+G G+I E +
Sbjct: 347 AVFYQGEVCLGGGIIEERY 365
>gi|227499265|ref|ZP_03929377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus tetradius ATCC 35098]
gi|227218674|gb|EEI83905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus tetradius ATCC 35098]
Length = 367
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 148/380 (38%), Positives = 219/380 (57%), Gaps = 25/380 (6%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +K KV V +SGGVDSSVA LL G+ ++K W D EN C E D +
Sbjct: 1 MKDKKDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDDTD-EN--GVCTAEVDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
A AVC+Q+D+P ++ EY+ V +Y ++EY+ GRTPNPD++CN IKF AF+D
Sbjct: 58 DAVAVCNQIDIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAK 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ D+VA+GHYA+ V SAD+ +V+ D KDQTYFLS LSQ Q+K ++FP+G
Sbjct: 118 SLGADFVATGHYAR-VDRSADE----TVMLRGVDSNKDQTYFLSQLSQEQIKDVLFPVGE 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K +VR+ A ++ L D+KDS GICF+G+ F+EF++ ++ EG I++ E G+ LG+
Sbjct: 173 LEKSQVREIAHKYKLATADKKDSTGICFIGERDFNEFLSNYLPAQEGNIVDTE-GNILGR 231
Query: 253 HWGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL--K 308
H G F+TIGQR+GL + G W+V KD+K N + V + K L L
Sbjct: 232 HEGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKKNELIVCQG-----KNNPLLFSNKLYAS 286
Query: 309 WLSGLPPEEI-SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSED-DQGLAAGQFA 366
S + +EI C + + N ++ + DG ++++ D + + GQ A
Sbjct: 287 EFSTISDKEIPEEFSCTAKFRYRQADINAHVKVLGDGK-----IEVTYDRTKAVTPGQAA 341
Query: 367 AFYQGTRCIGSGVILESWDD 386
FY G C+GS +I E ++D
Sbjct: 342 VFYLGDVCLGSAIIDEVYND 361
>gi|83319617|ref|YP_424495.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
gi|123535669|sp|Q2SRW8.1|MNMA_MYCCT RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|83283503|gb|ABC01435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma capricolum subsp. capricolum ATCC 27343]
Length = 375
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/377 (37%), Positives = 213/377 (56%), Gaps = 26/377 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------CPWEEDMK 72
KV V LSGGVDSSVA LL G+ +++ W + CP E+D
Sbjct: 4 KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINDDICPQEQDYL 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAV D++++ L V EYW V SY IEEY+ RTPNPD+LCN IKF F++ AI
Sbjct: 64 DAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ + DY+A GHYAKV + ++Y+ L + D KDQTYFLS L+Q QL + +FPL
Sbjct: 124 NQLNADYIAMGHYAKVEFNKTTKQYE---LIKASDINKDQTYFLSQLNQNQLSKTLFPLA 180
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++KE+VRK A + +L ++KDS GICF+G+ F+ F+ +I G I++ +T LG
Sbjct: 181 NLTKEQVRKIALEQNLITANKKDSTGICFIGERNFTSFLQNYIPSQTGDIVDIKTNKVLG 240
Query: 252 KHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR----VG 305
KH G +YTIGQR+G+ L G P+YV +KDVK N+++V S + L+ V
Sbjct: 241 KHIGIMYYTIGQRKGINLSGMSEPYYVADKDVKKNILYVC----STSDQSYLYSTSCLVN 296
Query: 306 SLKWLSGLPP--EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
+ W+ + +++++ +C+ + + ++++ ++D N V + + + G
Sbjct: 297 DINWILDISKYVDDVNQFECQAKFRYRQLDNKVVVKKIDD---NNYKVMFKKPLKAITIG 353
Query: 364 QFAAFYQGTRCIGSGVI 380
Q A FY C+G VI
Sbjct: 354 QQAVFYLDDICLGGAVI 370
>gi|359439988|ref|ZP_09229916.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20429]
gi|392532542|ref|ZP_10279679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas arctica A 37-1-2]
gi|358038189|dbj|GAA66165.1| tRNA-specific 2-thiouridylase mnmA [Pseudoalteromonas sp. BSi20429]
Length = 366
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 213/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAADDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDNNKDQSYFLYTLSHEHIGQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI E G+ +G
Sbjct: 173 DIEKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVI-EDTDGNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLIVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ +C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRIGPKGTTRCTVKTRYRQEDLSCTLLV-----GEDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYAEDICLGGGII 361
>gi|402298188|ref|ZP_10817898.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus
alcalophilus ATCC 27647]
gi|401726591|gb|EJS99812.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus
alcalophilus ATCC 27647]
Length = 403
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 204/372 (54%), Gaps = 19/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D F C ED + VC+
Sbjct: 44 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDETGF---CTATEDYEDVIRVCN 100
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y +EEY+ GRTPNPDV+CN IKF AF++ ++ DYV
Sbjct: 101 QIGIPYYAVNFEKQYWDKVFTYFLEEYKSGRTPNPDVMCNKEIKFKAFLNHALTLGADYV 160
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V D E + L D KDQTYFL+ LSQ QL +++FPLG + K+EVR
Sbjct: 161 ATGHYAQV--KEVDGEVQ---LLRGADDNKDQTYFLNALSQQQLSKVMFPLGHLPKKEVR 215
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q +L +KDS GICF+G+ F EF++ + G ++ G+ GKH G +Y
Sbjct: 216 EIAKQANLATATKKDSTGICFIGERNFKEFLSEFLPAQPGE-MQTFDGEVKGKHDGLMYY 274
Query: 260 TIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
T+GQRQGL + PG PW+V++K+VK N+++V + Y+ + +++ P E
Sbjct: 275 TLGQRQGLGIGGPGEPWFVIDKNVKENILYVGQGYHHDGLYTEGLEAIEMNYIATEPRLE 334
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
K R Y + V + A VQ E + + GQ Y+G RC+G
Sbjct: 335 PFTCTAKFR-----YRQTDVPVTVYPQADGTAKVQFDERQRAITPGQAVVLYEGERCLGG 389
Query: 378 GVI---LESWDD 386
G I ++ W++
Sbjct: 390 GTIDRVIKKWEN 401
>gi|311031538|ref|ZP_07709628.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. m3-13]
Length = 371
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 205/366 (56%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V + +SGGVDSSVA LL G+ ++K W +D + F C ED
Sbjct: 6 KDTRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYNDVIR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V Y ++EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 63 VCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHALDLGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA+V D EYK + D+ KDQTYFL+ L Q QL +++FP+G I K
Sbjct: 123 DYLATGHYAQV--EFRDGEYK---MLRGLDENKDQTYFLNQLGQEQLSKVMFPIGNIEKS 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L +KDS GICF+G+ F EF++ ++ G +L + G+ GKH G
Sbjct: 178 EVREIAKRAGLATATKKDSTGICFIGERNFKEFLSGYLPAQPGNMLTMD-GEVKGKHDGL 236
Query: 257 WFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+YTIGQR GL + G PW+V+ KD++ NV++V +++++ + W+S P
Sbjct: 237 MYYTIGQRHGLGIGGSGDPWFVIGKDLEKNVLYVGQSFHNELLYSDSITATDISWVSNNP 296
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + K R+ + + I+H+ED N V E + + GQ FY G C
Sbjct: 297 PADGTVCTAKFRYRQA--DNKVTIQHLED---NKVKVIFDEPVRAITPGQAVVFYNGDEC 351
Query: 375 IGSGVI 380
+G G I
Sbjct: 352 LGGGTI 357
>gi|254375237|ref|ZP_04990717.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548]
gi|151572955|gb|EDN38609.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548]
Length = 359
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 212/370 (57%), Gaps = 23/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + +Y+
Sbjct: 62 SIGIRFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGNYI 121
Query: 140 ASGHYA--KVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA +V+ + Q K D KDQTYFL L Q QL++ IFP+G I K +
Sbjct: 122 ATGHYARTRVLEDGSVQLVK------GLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSK 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G
Sbjct: 176 VREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLM 234
Query: 258 FYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++
Sbjct: 235 YYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVA 294
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G+ P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 295 GMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYID 349
Query: 372 TRCIGSGVIL 381
C+G GVI+
Sbjct: 350 DVCLGGGVII 359
>gi|332535582|ref|ZP_08411352.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas haloplanktis ANT/505]
gi|332035000|gb|EGI71520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas haloplanktis ANT/505]
Length = 366
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 213/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAADDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDNNKDQSYFLYTLSHEHIGQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI E G+ +G
Sbjct: 173 DIEKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVI-EDTDGNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLVVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ +C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRVGPKGTTRCTVKTRYRQEDLSCTLLV-----GEDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYAEDVCLGGGII 361
>gi|417824197|ref|ZP_12470788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE48]
gi|340047882|gb|EGR08805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE48]
Length = 371
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 202/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C + + E I V+ E + GQ A FYQG
Sbjct: 305 TPITEPVRCSVKTRYRQSDIACTI----IPLSDERIKVM-FDEPQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 ICLGGGIIEE 369
>gi|153826012|ref|ZP_01978679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae MZO-2]
gi|149740232|gb|EDM54379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae MZO-2]
Length = 372
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 70 KIGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 186
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 245
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 246 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 305
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 306 TPITEPVRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 360
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 361 ICLGGGIIEE 370
>gi|15641141|ref|NP_230773.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121587442|ref|ZP_01677211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae 2740-80]
gi|121726243|ref|ZP_01679533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae V52]
gi|147673628|ref|YP_001216596.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O395]
gi|153816924|ref|ZP_01969591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae NCTC 8457]
gi|153822021|ref|ZP_01974688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae B33]
gi|227081301|ref|YP_002809852.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae M66-2]
gi|227117493|ref|YP_002819389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae O395]
gi|14195282|sp|Q9KSX8.1|MNMA_VIBCH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205828983|sp|A5F2F2.1|MNMA_VIBC3 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|9655600|gb|AAF94287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121548362|gb|EAX58426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae 2740-80]
gi|121631189|gb|EAX63562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae V52]
gi|126512511|gb|EAZ75105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae NCTC 8457]
gi|126520486|gb|EAZ77709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae B33]
gi|146315511|gb|ABQ20050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae O395]
gi|227009189|gb|ACP05401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae M66-2]
gi|227012943|gb|ACP09153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae O395]
Length = 372
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 70 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEV 186
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 245
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 246 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 305
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 306 TPITEPVRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 360
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 361 ICLGGGIIEE 370
>gi|138896133|ref|YP_001126586.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus thermodenitrificans
NG80-2]
gi|196250086|ref|ZP_03148780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. G11MC16]
gi|166234855|sp|A4IR87.1|MNMA_GEOTN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|134267646|gb|ABO67841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus thermodenitrificans NG80-2]
gi|196210270|gb|EDY05035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. G11MC16]
Length = 371
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 143/371 (38%), Positives = 206/371 (55%), Gaps = 18/371 (4%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
PH+ +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 5 PHET--RVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYED 59
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS 133
VC+Q+ +P V+ +YW V +Y + EY+ GRTPNPDV+CN IKF AF++ S
Sbjct: 60 VVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHAMS 119
Query: 134 MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
+ DYVA+GHYA+V D EYK + D KDQTYFL+ L QAQL +++FP+G +
Sbjct: 120 IGADYVATGHYARV--EFRDGEYK---MLRGADPNKDQTYFLNQLGQAQLSKVMFPIGHL 174
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K +VR+ A + L +KDS GICF+G+ F EF++ ++ GV ++ G+ G+H
Sbjct: 175 QKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLPAQPGV-MKTLDGEVKGRH 233
Query: 254 WGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
G +YTIGQR GL + G PW+VV KDV+ NV++V++ + + + + W+S
Sbjct: 234 DGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVS 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
PE R K R+ + +M+ + DG A V + + GQ FY G
Sbjct: 294 DRKPEAPFRCTAKFRYRQP--DIGVMVHPLADGK---AEVVFDAPARAVTPGQAVVFYNG 348
Query: 372 TRCIGSGVILE 382
C+G G I E
Sbjct: 349 DECLGGGTIDE 359
>gi|417002144|ref|ZP_11941533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus prevotii ACS-065-V-Col13]
gi|325479285|gb|EGC82381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 367
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 151/385 (39%), Positives = 217/385 (56%), Gaps = 35/385 (9%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +K KV V +SGGVDSSVA LL G+ ++K W D EN C E D +
Sbjct: 1 MKEKKDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDDTD-EN--GVCTAEVDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
A AV +Q+ +P ++ EY+ V +Y ++EY+ GRTPNPD++CN IKF AF+D
Sbjct: 58 DAVAVSNQIGIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAK 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ DYVA+GHYA+ AD+ +V+ D KDQTYFLS LSQ Q+K ++FP+G
Sbjct: 118 SLGADYVATGHYAR-----ADRSNGETVMLRGVDNNKDQTYFLSQLSQEQIKDVLFPVGE 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
K+EVR+ A +++L D+KDS GICF+G+ F+EF++ ++ G I++ E G LGK
Sbjct: 173 FEKKEVREIAHKYNLATADKKDSTGICFIGERDFNEFLSNYLPAQPGNIVDTE-GHILGK 231
Query: 253 HWGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G F+TIGQR+GL + G W+V KD+KNN + V + R L +
Sbjct: 232 HDGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKNNELIVCQG-----------RNNPLLFS 280
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIE--------HVEDGGENIAVVQLSED-DQGLA 361
+ L E S + K P ++C HV+ GE V+++ D + +
Sbjct: 281 NKLYASEFSTISDK--KCPEEFDCTAKFRYRQKDINAHVKVLGE--GKVEVTYDKTKAVT 336
Query: 362 AGQFAAFYQGTRCIGSGVILESWDD 386
GQ A FYQG C+GS +I E ++D
Sbjct: 337 PGQAAVFYQGEVCLGSAIIDEVYND 361
>gi|339483654|ref|YP_004695440.1| tRNA-specific 2-thiouridylase mnmA [Nitrosomonas sp. Is79A3]
gi|338805799|gb|AEJ02041.1| tRNA-specific 2-thiouridylase mnmA [Nitrosomonas sp. Is79A3]
Length = 359
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 202/377 (53%), Gaps = 30/377 (7%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W +D + + C +D A +
Sbjct: 2 KKQRVVVGMSGGVDSSVAAYLLKQQGYDVVGLFMKNWEDDDTDEY---CSSRQDFLDAVS 58
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V D +D+P+EVV+ + EY V S+ + EY+ GRTPNPDVLCN IKF AF+D ++
Sbjct: 59 VADVIDIPIEVVNFSVEYKDRVFSHFLSEYQAGRTPNPDVLCNAEIKFKAFLDHAHKLDA 118
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
D +A+GHYA+V V +L K D KDQ+YFL L+Q QL +FP+G +
Sbjct: 119 DCIATGHYAQVRKVGG-------VFQLLKGEDGTKDQSYFLYRLNQTQLASTLFPIGHLY 171
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVRK A Q LPN +KDS GICF+G+ F EF+ R++ G I E G +G+H
Sbjct: 172 KREVRKIAKQLKLPNFSKKDSTGICFIGERPFREFLNRYLPHESGEIQTPE-GKVIGQHI 230
Query: 255 GFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLK 308
G +YTIGQRQGL + G PW+V KD+ N++ V + + D R + L
Sbjct: 231 GLMYYTIGQRQGLGIGGTRDGSDEPWFVSAKDMSRNILVVVQGHNHPDLLRPSLKAADLT 290
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNC---NLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+SG P K R+ C NL +H + V ++D + GQ
Sbjct: 291 WISGKQPHCNWVYAAKTRYRQVDAPCTITNLTQDHCQ--------VDFAQDQWAITPGQS 342
Query: 366 AAFYQGTRCIGSGVILE 382
Y+ C+G G+I+E
Sbjct: 343 VVIYESKVCLGGGIIIE 359
>gi|229505277|ref|ZP_04394787.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae BX 330286]
gi|229511053|ref|ZP_04400532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae B33]
gi|229518173|ref|ZP_04407617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae RC9]
gi|229608296|ref|YP_002878944.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae MJ-1236]
gi|254848257|ref|ZP_05237607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae MO10]
gi|255745540|ref|ZP_05419488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholera CIRS 101]
gi|262158386|ref|ZP_06029502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae INDRE 91/1]
gi|262170249|ref|ZP_06037936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae RC27]
gi|360035031|ref|YP_004936794.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740950|ref|YP_005332919.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae IEC224]
gi|417813156|ref|ZP_12459813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-49A2]
gi|417816022|ref|ZP_12462654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HCUF01]
gi|418332167|ref|ZP_12943103.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-06A1]
gi|418336913|ref|ZP_12945811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-23A1]
gi|418343424|ref|ZP_12950212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-28A1]
gi|418348582|ref|ZP_12953316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-43A1]
gi|418354867|ref|ZP_12957588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-61A1]
gi|419825630|ref|ZP_14349134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1033(6)]
gi|421316393|ref|ZP_15766964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1032(5)]
gi|421320749|ref|ZP_15771306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1038(11)]
gi|421324742|ref|ZP_15775268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1041(14)]
gi|421328404|ref|ZP_15778918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1042(15)]
gi|421331423|ref|ZP_15781903.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1046(19)]
gi|421334998|ref|ZP_15785465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1048(21)]
gi|421338892|ref|ZP_15789327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-20A2]
gi|421347304|ref|ZP_15797686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-46A1]
gi|422891239|ref|ZP_16933624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-40A1]
gi|422902121|ref|ZP_16937453.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-48A1]
gi|422906331|ref|ZP_16941164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-70A1]
gi|422912920|ref|ZP_16947439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HFU-02]
gi|422925401|ref|ZP_16958426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-38A1]
gi|423144720|ref|ZP_17132329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-19A1]
gi|423149399|ref|ZP_17136727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-21A1]
gi|423153216|ref|ZP_17140410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-22A1]
gi|423156027|ref|ZP_17143131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-32A1]
gi|423159857|ref|ZP_17146825.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-33A2]
gi|423164569|ref|ZP_17151330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-48B2]
gi|423730693|ref|ZP_17704007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-17A1]
gi|423753000|ref|ZP_17712022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-50A2]
gi|423892394|ref|ZP_17726077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-62A1]
gi|423927172|ref|ZP_17730694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-77A1]
gi|424001715|ref|ZP_17744801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-17A2]
gi|424005876|ref|ZP_17748856.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-37A1]
gi|424023893|ref|ZP_17763553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-62B1]
gi|424026684|ref|ZP_17766297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-69A1]
gi|424586015|ref|ZP_18025605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1030(3)]
gi|424590367|ref|ZP_18029804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1037(10)]
gi|424594715|ref|ZP_18034048.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1040(13)]
gi|424598580|ref|ZP_18037774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio Cholerae CP1044(17)]
gi|424601324|ref|ZP_18040477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1047(20)]
gi|424606309|ref|ZP_18045269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1050(23)]
gi|424610142|ref|ZP_18048996.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-39A1]
gi|424612946|ref|ZP_18051749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-41A1]
gi|424616764|ref|ZP_18055451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-42A1]
gi|424621713|ref|ZP_18060236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-47A1]
gi|424644687|ref|ZP_18082435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-56A2]
gi|424652366|ref|ZP_18089842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-57A2]
gi|424656271|ref|ZP_18093569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-81A2]
gi|440709398|ref|ZP_20890055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae 4260B]
gi|443503222|ref|ZP_21070204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-64A1]
gi|443507130|ref|ZP_21073914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-65A1]
gi|443511247|ref|ZP_21077904.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-67A1]
gi|443514805|ref|ZP_21081336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-68A1]
gi|443518610|ref|ZP_21085020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-71A1]
gi|443523497|ref|ZP_21089726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-72A2]
gi|443531111|ref|ZP_21097126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-7A1]
gi|443534884|ref|ZP_21100780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-80A1]
gi|443538453|ref|ZP_21104308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-81A1]
gi|449056371|ref|ZP_21735039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae O1 str. Inaba G4222]
gi|229344888|gb|EEO09862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae RC9]
gi|229351018|gb|EEO15959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae B33]
gi|229357500|gb|EEO22417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae BX 330286]
gi|229370951|gb|ACQ61374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae MJ-1236]
gi|254843962|gb|EET22376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae MO10]
gi|255736615|gb|EET92012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholera CIRS 101]
gi|262021264|gb|EEY39978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae RC27]
gi|262029827|gb|EEY48475.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae INDRE 91/1]
gi|340041748|gb|EGR02714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HCUF01]
gi|340042460|gb|EGR03425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-49A2]
gi|341624025|gb|EGS49541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-70A1]
gi|341624282|gb|EGS49788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-48A1]
gi|341625369|gb|EGS50832.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-40A1]
gi|341639745|gb|EGS64356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HFU-02]
gi|341647714|gb|EGS71791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-38A1]
gi|356419579|gb|EHH73126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-06A1]
gi|356420316|gb|EHH73844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-21A1]
gi|356425578|gb|EHH78948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-19A1]
gi|356432016|gb|EHH85215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-22A1]
gi|356432491|gb|EHH85688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-23A1]
gi|356436685|gb|EHH89797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-28A1]
gi|356442327|gb|EHH95189.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-32A1]
gi|356447321|gb|EHI00112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-43A1]
gi|356448973|gb|EHI01733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-33A2]
gi|356453269|gb|EHI05932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-61A1]
gi|356455778|gb|EHI08414.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-48B2]
gi|356646185|gb|AET26240.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O1 str.
2010EL-1786]
gi|378794460|gb|AFC57931.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae IEC224]
gi|395920412|gb|EJH31234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1041(14)]
gi|395921350|gb|EJH32170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1032(5)]
gi|395923731|gb|EJH34542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1038(11)]
gi|395929910|gb|EJH40659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1042(15)]
gi|395932687|gb|EJH43430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1046(19)]
gi|395936859|gb|EJH47582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1048(21)]
gi|395943840|gb|EJH54514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-20A2]
gi|395946364|gb|EJH57028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-46A1]
gi|395961093|gb|EJH71437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-56A2]
gi|395962234|gb|EJH72534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-57A2]
gi|395965314|gb|EJH75489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-42A1]
gi|395972852|gb|EJH82427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-47A1]
gi|395976500|gb|EJH85946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1030(3)]
gi|395978266|gb|EJH87656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1047(20)]
gi|408008753|gb|EKG46712.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-39A1]
gi|408015136|gb|EKG52732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-41A1]
gi|408034888|gb|EKG71371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1037(10)]
gi|408035506|gb|EKG71971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1040(13)]
gi|408044048|gb|EKG80004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio Cholerae CP1044(17)]
gi|408045306|gb|EKG81155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1050(23)]
gi|408055951|gb|EKG90854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-81A2]
gi|408609711|gb|EKK83087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae CP1033(6)]
gi|408626064|gb|EKK98952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-17A1]
gi|408638872|gb|EKL10739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-50A2]
gi|408657083|gb|EKL28174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-77A1]
gi|408658437|gb|EKL29507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-62A1]
gi|408847275|gb|EKL87346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-37A1]
gi|408848463|gb|EKL88511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-17A2]
gi|408872019|gb|EKM11246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-62B1]
gi|408880465|gb|EKM19390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-69A1]
gi|439974987|gb|ELP51123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae 4260B]
gi|443432533|gb|ELS75061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-64A1]
gi|443436163|gb|ELS82286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-65A1]
gi|443439951|gb|ELS89647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-67A1]
gi|443444049|gb|ELS97331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-68A1]
gi|443447659|gb|ELT04301.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-71A1]
gi|443450597|gb|ELT10872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-72A2]
gi|443458194|gb|ELT25590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-7A1]
gi|443462035|gb|ELT33090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-80A1]
gi|443466042|gb|ELT40701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-81A1]
gi|448264194|gb|EMB01433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae O1 str. Inaba G4222]
Length = 371
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 305 TPITEPVRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 ICLGGGIIEE 369
>gi|56421098|ref|YP_148416.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus
HTA426]
gi|375009657|ref|YP_004983290.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|448238842|ref|YP_007402900.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
[Geobacillus sp. GHH01]
gi|81557817|sp|Q5KWT8.1|MNMA2_GEOKA RecName: Full=tRNA-specific 2-thiouridylase MnmA 2
gi|56380940|dbj|BAD76848.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus kaustophilus HTA426]
gi|359288506|gb|AEV20190.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445207684|gb|AGE23149.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
[Geobacillus sp. GHH01]
Length = 371
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 206/371 (55%), Gaps = 18/371 (4%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
PH+ +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 5 PHET--RVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYED 59
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS 133
VC+Q+ +P V+ +YW V +Y + EY+ GRTPNPDV+CN IKF AF++ S
Sbjct: 60 VVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHAMS 119
Query: 134 MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
+ DY+A+GHYA+V D EYK + D KDQTYFL+ L QAQL +++FP+G +
Sbjct: 120 IGADYIATGHYARV--EFRDGEYK---MLRGADPNKDQTYFLNQLGQAQLSKVMFPIGHL 174
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K +VR+ A + L +KDS GICF+G+ F EF++ ++ GV ++ G+ G+H
Sbjct: 175 QKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLPAQPGV-MKTLDGEVKGRH 233
Query: 254 WGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
G +YTIGQR GL + G PW+VV KDV+ NV++V++ + + + + W+S
Sbjct: 234 DGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVS 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
PE R K R+ + + + + DGG A V + + GQ FY G
Sbjct: 294 DRKPEAPFRCTAKFRYRQP--DVGVTVHPLADGG---AEVVFDAPARAVTPGQAVVFYNG 348
Query: 372 TRCIGSGVILE 382
C+G G I E
Sbjct: 349 EECLGGGTIDE 359
>gi|294140592|ref|YP_003556570.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Shewanella violacea DSS12]
gi|293327061|dbj|BAJ01792.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Shewanella violacea DSS12]
Length = 376
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 207/368 (56%), Gaps = 17/368 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A ++ D+
Sbjct: 70 KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFADEILDADF 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + +D+ + +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVR----RSDETGQSRMLR-GIDGNKDQSYFLYTLSHEQIARSLFPVGELEKSEV 184
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ KF++F++ + G I AE G+ +GKH G +
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLPAQPGDIETAE-GEVIGKHQGLMY 243
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVV+K++ NV+ V + F L W+
Sbjct: 244 HTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGTHPRLMSLGFYADQLHWVDR 303
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P + +++ K R+ C L +E D GE+ V E + GQ A FY G
Sbjct: 304 KGPVDEAKITVKTRYRQRDVACTLFLE-TNDKGEDTIRVLFDEPVAAVTPGQSAVFYSGE 362
Query: 373 RCIGSGVI 380
C+G G+I
Sbjct: 363 LCLGGGII 370
>gi|238897773|ref|YP_002923452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229465530|gb|ACQ67304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 364
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 134/375 (35%), Positives = 212/375 (56%), Gaps = 22/375 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++ KV V +SGGVDSSVA LL G+ ++K W ++D E + C D+
Sbjct: 1 MSNKNSKKVVVGMSGGVDSSVAAYLLLEQGYQVCGLFMKNWEEDDNELY---CAAAVDLS 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
+AVCD++++ L V+ + EYW V + + EYR GRTPNPD+LCN IKF AF++ A+
Sbjct: 58 DTQAVCDKLNIELHTVNFSAEYWNQVFTLFLAEYRAGRTPNPDILCNKEIKFKAFLEFAL 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ DY+A+GHY + H S + ++ L D+ KDQ+YFL + Q QL +FP+G
Sbjct: 118 QDLGADYIATGHYVR--HQSNNGQH---FLLRGIDENKDQSYFLYTIGQQQLANCLFPIG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR A + +L N +KDS GICF+G+ KF +F+++++ +G I+ + G +G
Sbjct: 173 GLKKSEVRDIAKKLNLVNAQKKDSTGICFVGERKFRDFLSQYLSGQKGSIMTVD-GKHIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD+KNN++ V++N +
Sbjct: 232 QHQGLMYHTLGQRKGLGIGGTKGEGEAPWYVVDKDIKNNILLVAQNPLHPLLMSKGLIAQ 291
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
L W++ P + R K R+ +++E ++ +VV+ + GQ
Sbjct: 292 QLHWVNSPPTKSPYRCVLKTRYRQEDIRAEIIVE------QDQSVVRFEHPVSSVTPGQS 345
Query: 366 AAFYQGTRCIGSGVI 380
FYQ C+G G+I
Sbjct: 346 VVFYQNELCLGGGII 360
>gi|424807929|ref|ZP_18233331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio mimicus SX-4]
gi|342324466|gb|EGU20247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio mimicus SX-4]
Length = 372
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 70 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVRRTFPQNGE--KPQMLR-GLDNNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 186
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 245
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 246 HTLGQRKGLHIGGMKESNEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 305
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 306 TPITEPLRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 360
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 361 ICLGGGIIEE 370
>gi|258621706|ref|ZP_05716737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio mimicus VM573]
gi|258626348|ref|ZP_05721195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio mimicus VM603]
gi|262171838|ref|ZP_06039516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio mimicus MB-451]
gi|258581400|gb|EEW06302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio mimicus VM603]
gi|258585937|gb|EEW10655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio mimicus VM573]
gi|261892914|gb|EEY38900.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio mimicus MB-451]
Length = 371
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPQNGE--KPQMLR-GLDNNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKESNEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 305 TPITEPLRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 ICLGGGIIEE 369
>gi|331703443|ref|YP_004400130.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
[Mycoplasma mycoides subsp. capri LC str. 95010]
gi|328801998|emb|CBW54152.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
[Mycoplasma mycoides subsp. capri LC str. 95010]
Length = 384
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 212/374 (56%), Gaps = 20/374 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------CPWEEDMK 72
KV V LSGGVDSSVA LL G+ +++ W + CP E+D
Sbjct: 13 KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINNDICPQEQDFL 72
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAV D++++ L V EYW V SY IEEY+ RTPNPD+LCN IKF F++ AI
Sbjct: 73 DAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 132
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ + DY+A GHYAKV + ++Y+ L + D KDQTYFLS L+Q QL + +FPL
Sbjct: 133 NQLNADYIAMGHYAKVEFNKTTKQYE---LIKASDTNKDQTYFLSQLNQNQLSKTLFPLA 189
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++KE+VRK A + +L ++KDS GICF+G+ F++F+ +I G I++ +T LG
Sbjct: 190 NLTKEQVRKIALEQNLITANKKDSTGICFIGERHFTDFLQNYIPSQTGDIVDIKTNKVLG 249
Query: 252 KHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFV-SRNYYSFDKKRRLFRVGSLK 308
KH G +YTIGQR+G+ L G P+YV +KDV+ +++V S + S+ F V +
Sbjct: 250 KHIGIMYYTIGQRKGIHLSGMSEPYYVADKDVEKKILYVCSTSDQSYLYSTSCF-VNDIN 308
Query: 309 WLSGLPP--EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
W+ L +++ +C+ + + N++++ ++D + + + + GQ A
Sbjct: 309 WILDLSKYVSDVNEFKCQAKFRYRQNDNNVVVKKIDDNNYQVI---FEKPLKAITIGQQA 365
Query: 367 AFYQGTRCIGSGVI 380
FY C+G VI
Sbjct: 366 VFYLDDICLGGAVI 379
>gi|82703361|ref|YP_412927.1| tRNA-specific 2-thiouridylase MnmA [Nitrosospira multiformis ATCC
25196]
gi|123544047|sp|Q2Y6T6.1|MNMA_NITMU RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|82411426|gb|ABB75535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosospira multiformis ATCC 25196]
Length = 363
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 207/375 (55%), Gaps = 24/375 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W +D + + C +D+ A +V D
Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYEVIGLFMKNWEDDDTDEY---CSSRQDLIDAASVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +PLE V+ + EY + V S+ + EY+ GRTPNPDVLCN IKF AF+D + + DY+
Sbjct: 62 VIGIPLEAVNFSAEYKERVFSHFLAEYKAGRTPNPDVLCNAEIKFKAFLDHAAGLGADYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V ++ V +L K D KDQ+YFL L+QAQL R +FP+G + K +
Sbjct: 122 ATGHYAQVRNTDG-------VFQLLKGEDGTKDQSYFLYRLNQAQLSRALFPIGHLYKRD 174
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR A LPN +KDS GICF+G+ F EF+ R++ G I +GD +G+H G
Sbjct: 175 VRSIAKDHGLPNFSKKDSTGICFIGERPFREFLNRYLPNDPGEI-RTPSGDVMGRHAGLM 233
Query: 258 FYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + G PW+V EKDVK NV+ V + + D R L W+S
Sbjct: 234 YYTIGQRQGLGIGGTRGGDGEPWFVSEKDVKRNVLTVVQGHDHPDLLRPALAATDLTWVS 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G P K+R+ C++ N ++ ++ +A GQ Y+
Sbjct: 294 GKMPRCNWVYAAKIRYRQSDAPCSITYLDC-----NKCKIEFAQPQWAVAPGQSVVVYES 348
Query: 372 TRCIGSGVILESWDD 386
C+G GVI + DD
Sbjct: 349 KVCLGGGVIAATQDD 363
>gi|297529272|ref|YP_003670547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. C56-T3]
gi|297252524|gb|ADI25970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. C56-T3]
Length = 371
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 206/371 (55%), Gaps = 18/371 (4%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
PH+ +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 5 PHET--RVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYED 59
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS 133
VC+Q+ +P V+ +YW V +Y + EY+ GRTPNPDV+CN IKF AF++ S
Sbjct: 60 VVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHAMS 119
Query: 134 MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
+ DY+A+GHYA+V D EYK + D KDQTYFL+ L QAQL +++FP+G +
Sbjct: 120 IGADYIATGHYARV--EFRDGEYK---MLRGADPNKDQTYFLNQLGQAQLSKVMFPIGHL 174
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K +VR+ A + L +KDS GICF+G+ F EF++ ++ GV ++ G+ G+H
Sbjct: 175 QKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLPARPGV-MKTLDGEVKGRH 233
Query: 254 WGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
G +YTIGQR GL + G PW+VV KDV+ NV++V++ + + + + W+S
Sbjct: 234 DGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVS 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
PE R K R+ + + + + DGG A V + + GQ FY G
Sbjct: 294 DRKPEAPFRCTAKFRYRQP--DVGVTVHPLADGG---AEVVFDAPARAVTPGQAVVFYNG 348
Query: 372 TRCIGSGVILE 382
C+G G I E
Sbjct: 349 EECLGGGTIDE 359
>gi|153214224|ref|ZP_01949259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae 1587]
gi|153802718|ref|ZP_01957304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae MZO-3]
gi|153828671|ref|ZP_01981338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae 623-39]
gi|254225518|ref|ZP_04919128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae V51]
gi|297578730|ref|ZP_06940658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae RC385]
gi|124115473|gb|EAY34293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae 1587]
gi|124121758|gb|EAY40501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae MZO-3]
gi|125621988|gb|EAZ50312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae V51]
gi|148875824|gb|EDL73959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae 623-39]
gi|297536324|gb|EFH75157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae RC385]
Length = 372
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 70 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 186
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 245
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 246 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 305
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 306 TPITEPVRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 360
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 361 ICLGGGIIEE 370
>gi|224542883|ref|ZP_03683422.1| hypothetical protein CATMIT_02077 [Catenibacterium mitsuokai DSM
15897]
gi|224524213|gb|EEF93318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Catenibacterium mitsuokai DSM 15897]
Length = 376
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 144/380 (37%), Positives = 207/380 (54%), Gaps = 26/380 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW---FQEDFENFWTE----CPWEEDMK 72
+V + LSGGVDS+VA LL G+ +++ W D T CP E+D +
Sbjct: 3 RVVLGLSGGVDSAVAAYLLKKQGYEVICVFMRNWDSSLNNDILGNPTNDDDVCPQEKDYQ 62
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
A+AV + + + V EYW V +Y +EEY GRTPNPD+LCN IKF AF+D
Sbjct: 63 DAQAVATHLGLEIRRVDFIKEYWDQVFTYFLEEYAKGRTPNPDILCNKHIKFKAFLDYAK 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S++ DY+A+GHYA+VVH+ E K SV+ D KDQTYFL L+Q QL +FP+G
Sbjct: 123 SIDADYIATGHYARVVHT----EGKESVMLRGVDNNKDQTYFLCQLNQNQLNNSLFPIGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A + DLP +KDS GICF+G+ F EF+ +I G +++ + +G
Sbjct: 179 LTKPEVRRIAEELDLPVAHKKDSTGICFIGERDFREFLKNYIPAKSGKMVDIVSKKVIGD 238
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL--- 307
H G +YTIGQR+GL + G PW+VV KD N++++++ D + L G+L
Sbjct: 239 HQGIMYYTIGQRKGLGIGGNGEPWFVVGKDYDKNILYIAQG----DSNKWLLSHGALITD 294
Query: 308 -KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
W+S PE K R+ + +L H D E V + + + GQ A
Sbjct: 295 VNWVSKTKPEGEYDCTAKFRYRQKDNDVSL---HFID--ETTLYVTFKKPIKAVTPGQAA 349
Query: 367 AFYQGTRCIGSGVILESWDD 386
FY G C+G G I + + D
Sbjct: 350 VFYDGDVCLGGGTIDKVYKD 369
>gi|229515510|ref|ZP_04404969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae TMA 21]
gi|229520442|ref|ZP_04409867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae TM 11079-80]
gi|229525739|ref|ZP_04415144.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae bv. albensis VL426]
gi|229529783|ref|ZP_04419173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae 12129(1)]
gi|384424280|ref|YP_005633638.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae LMA3984-4]
gi|419829707|ref|ZP_14353193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-1A2]
gi|419832679|ref|ZP_14356141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-61A2]
gi|419835987|ref|ZP_14359430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-46B1]
gi|421342598|ref|ZP_15793003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-43B1]
gi|421353903|ref|ZP_15804235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-45]
gi|422916893|ref|ZP_16951221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-02A1]
gi|422922382|ref|ZP_16955571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae BJG-01]
gi|423734534|ref|ZP_17707746.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-41B1]
gi|423819560|ref|ZP_17715818.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-55C2]
gi|423852893|ref|ZP_17719611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-59A1]
gi|423880320|ref|ZP_17723216.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-60A1]
gi|423997307|ref|ZP_17740566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-02C1]
gi|424008818|ref|ZP_17751765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-44C1]
gi|424016016|ref|ZP_17755857.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-55B2]
gi|424018951|ref|ZP_17758747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-59B1]
gi|424624495|ref|ZP_18062967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-50A1]
gi|424628996|ref|ZP_18067293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-51A1]
gi|424633027|ref|ZP_18071137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-52A1]
gi|424636116|ref|ZP_18074131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-55A1]
gi|424640055|ref|ZP_18077945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-56A1]
gi|424648089|ref|ZP_18085759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-57A1]
gi|424660443|ref|ZP_18097690.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-16]
gi|429887337|ref|ZP_19368860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae PS15]
gi|443526913|ref|ZP_21092980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-78A1]
gi|229333557|gb|EEN99043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae 12129(1)]
gi|229339320|gb|EEO04337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae bv. albensis VL426]
gi|229342540|gb|EEO07533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae TM 11079-80]
gi|229347279|gb|EEO12239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae TMA 21]
gi|327483833|gb|AEA78240.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Vibrio cholerae LMA3984-4]
gi|341638844|gb|EGS63482.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-02A1]
gi|341646529|gb|EGS70642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae BJG-01]
gi|395943115|gb|EJH53790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-43B1]
gi|395953028|gb|EJH63641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-45]
gi|408014452|gb|EKG52091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-50A1]
gi|408020072|gb|EKG57426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-52A1]
gi|408025449|gb|EKG62507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-56A1]
gi|408025953|gb|EKG62990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-55A1]
gi|408035289|gb|EKG71763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-57A1]
gi|408050541|gb|EKG85701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-16]
gi|408057682|gb|EKG92521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-51A1]
gi|408621292|gb|EKK94295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-1A2]
gi|408630835|gb|EKL03407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-41B1]
gi|408636205|gb|EKL08372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-55C2]
gi|408642657|gb|EKL14401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-60A1]
gi|408643619|gb|EKL15339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-59A1]
gi|408651323|gb|EKL22579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-61A2]
gi|408853629|gb|EKL93413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-02C1]
gi|408857852|gb|EKL97531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-46B1]
gi|408861399|gb|EKM00995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-55B2]
gi|408865213|gb|EKM04622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-44C1]
gi|408868959|gb|EKM08266.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-59B1]
gi|429225774|gb|EKY31985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae PS15]
gi|443454783|gb|ELT18583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HC-78A1]
Length = 371
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 305 TPITEPVRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 ICLGGGIIEE 369
>gi|238796003|ref|ZP_04639515.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969]
gi|238720208|gb|EEQ12012.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969]
Length = 373
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 146/379 (38%), Positives = 207/379 (54%), Gaps = 35/379 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL LS QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVNGKSRLLR-GLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQHMGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGDDPWYVVDKDVANNILLVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCN---LMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P R K R+ C L E VE V+ + + GQ
Sbjct: 295 WVDRQPITAAFRCVVKTRYRQQDIPCTVTPLDDERVE--------VRFDDPVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVILESW 384
A FYQG C+G G+I E +
Sbjct: 347 AVFYQGEVCLGGGIIEERY 365
>gi|403070218|ref|ZP_10911550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase
[Oceanobacillus sp. Ndiop]
Length = 370
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/376 (37%), Positives = 205/376 (54%), Gaps = 24/376 (6%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M K ++V V +SGGVDSSVA LL G+ ++K W +D + F C ED
Sbjct: 1 MKSNKDIRVVVGMSGGVDSSVAALLLKEQGYDVVGIFMKNW--DDTDEFGV-CTATEDFD 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+D+P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVVRVCNQLDIPYYSVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ DY+A+GHYA+V + E V D KDQTYFL+ LS LK+++FPLG
Sbjct: 118 SLGADYLATGHYAQVKETDGRIEMLRGV-----DDNKDQTYFLNQLSADVLKQVMFPLGH 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETGD 248
+ K EVR+ A + L D+KDS GICF+G+ F EF++ ++ GEM+ + G
Sbjct: 173 MPKSEVRRIAKEHGLVTADKKDSTGICFIGERNFKEFLSEYLPAQPGEMQTL-----DGA 227
Query: 249 FLGKHWGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
+G+H G +YTIGQRQGL + G PW+VV K++K+N+++V + + +
Sbjct: 228 VMGRHDGLMYYTIGQRQGLGIGGSGDPWFVVGKNLKDNILYVEQGFSNEKLYSDALVATD 287
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W++ E R C + + + + DG A V+ ++ + GQ
Sbjct: 288 LNWINADVITE--RFSCTAKFRYRQKDSQVTVSIQSDGK---AFVEFDSRERAITPGQAV 342
Query: 367 AFYQGTRCIGSGVILE 382
FY G C+G G I E
Sbjct: 343 VFYDGEVCLGGGTIDE 358
>gi|114563431|ref|YP_750944.1| tRNA-specific 2-thiouridylase MnmA [Shewanella frigidimarina NCIMB
400]
gi|122299537|sp|Q081F9.1|MNMA_SHEFN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|114334724|gb|ABI72106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella frigidimarina NCIMB 400]
Length = 372
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/376 (37%), Positives = 205/376 (54%), Gaps = 24/376 (6%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G ++K W ++D + + C +D+K
Sbjct: 6 PTSNGKKVIVGMSGGVDSSVSAYLLMQQGFEVEGLFMKNWEEDDTDEY---CAAADDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + + V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPL 190
++ DY+A GHY + +S +E+ + D KDQ+YFL LS Q+ R +FP+
Sbjct: 123 ILDADYIAMGHYVRRRDNS------DGSVEMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176
Query: 191 GCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250
G + K +VR+ A + L D+KDS GICF+G+ KF++F+A ++ G I E G+ +
Sbjct: 177 GELEKHQVREIAQKLGLITHDKKDSTGICFIGERKFTDFLATYLPAQPGDI-ETSEGEVI 235
Query: 251 GKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRV 304
G H G ++T+GQR+GL + G PWYVVEKD+ NV+ V++ V
Sbjct: 236 GTHQGLMYHTLGQRKGLGIGGLKNSNEDPWYVVEKDLVRNVLIVAQGGNHPRLMSTGMTV 295
Query: 305 GSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQ 364
L W+ P S + K R+ C L D +NI V+ E + GQ
Sbjct: 296 NQLHWVDRTGPANNSTITVKTRYRQRDVGCTLTY----DDADNITVM-FDEPVAAVTPGQ 350
Query: 365 FAAFYQGTRCIGSGVI 380
A FY G C+G G+I
Sbjct: 351 SAVFYDGDICLGGGII 366
>gi|390952705|ref|YP_006416464.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Thiocystis violascens DSM 198]
gi|390429274|gb|AFL76339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiocystis violascens DSM 198]
Length = 376
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/376 (38%), Positives = 205/376 (54%), Gaps = 22/376 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V LSGGVDS+VA L GH A ++K W ++D + C +D+ A+ V +
Sbjct: 15 RVIVGLSGGVDSAVAAHRLLEQGHEVEALFMKNWEEDDRAGY---CAAAQDLADARTVAE 71
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L V+ EYW V + + EYR RTPNPDVLCN IKF AF+D + D +
Sbjct: 72 RLGIRLHTVNFATEYWDRVFAEFLSEYRAMRTPNPDVLCNREIKFAAFLDHALGLGADAI 131
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V H + S L L +D KDQTYFL L QAQL R +FPL ++K EVR
Sbjct: 132 ATGHYARVTHDD-----RGSHLALCQDGEKDQTYFLHLLDQAQLARSLFPLHDLTKIEVR 186
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A L N ++KDS GICF+G+ +F +F+A+++ G I E G LG+H G +Y
Sbjct: 187 TIARAIGLANAEKKDSTGICFIGERRFRDFLAQYLPREPGPI-ETLEGVILGEHQGLAYY 245
Query: 260 TIGQRQGLRLPG------GPWYVVEKDV-KNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
TIGQRQGL + G PWYV KD +N ++ V +++ R L + W++G
Sbjct: 246 TIGQRQGLGVGGVTSGREAPWYVAAKDAERNRLILVQDSHHPRLMSRGLSGLPP-HWIAG 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P+ R Q ++RH C ++ + +D G V+ E + + GQ FY+
Sbjct: 305 RAPDLPLRCQARLRHRQPLQACEVL--NADDLG---CQVRFLEPQRAVTPGQSIVFYRDG 359
Query: 373 RCIGSGVILESWDDQG 388
C+G VI + W G
Sbjct: 360 VCLGGAVIDQGWSASG 375
>gi|422909925|ref|ZP_16944567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-09]
gi|341634181|gb|EGS58948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-09]
Length = 371
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAIQGADHPLLKSHGLVAAQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 305 TPITEPVRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 ICLGGGIIEE 369
>gi|417820549|ref|ZP_12467163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE39]
gi|423952310|ref|ZP_17734024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-40]
gi|423980341|ref|ZP_17737576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-46]
gi|340038180|gb|EGQ99154.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE39]
gi|408660443|gb|EKL31460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-40]
gi|408665567|gb|EKL36380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-46]
Length = 371
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKSGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 305 TPITEPVRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 ICLGGGIIEE 369
>gi|313665411|ref|YP_004047282.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma leachii PG50]
gi|392388848|ref|YP_005907257.1| tRNA-specific=2-thiouridylase mnmA [Mycoplasma leachii 99/014/6]
gi|312949863|gb|ADR24459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma leachii PG50]
gi|339276493|emb|CBV67072.1| tRNA-specific=2-thiouridylase mnmA [Mycoplasma leachii 99/014/6]
Length = 375
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 207/373 (55%), Gaps = 18/373 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------CPWEEDMK 72
KV V LSGGVDSSVA LL G+ +++ W + CP E+D
Sbjct: 4 KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNANINNDICPQEQDYL 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAV D++++ L V EYW V SY IEEY+ RTPNPD+LCN IKF F++ AI
Sbjct: 64 DAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ + DY+A GHYAKV + +Y+ L + D KDQTYFLS L+Q QL + +FPL
Sbjct: 124 NQLNADYIAMGHYAKVEFNKTTNQYE---LIKASDTNKDQTYFLSQLNQKQLSKTLFPLA 180
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++KE+VRK A + +L ++KDS GICF+G+ F+ F+ +I G I++ +T LG
Sbjct: 181 NLTKEQVRKIALKQNLITANKKDSTGICFIGERSFTNFLQNYIPNQTGDIVDIKTNKVLG 240
Query: 252 KHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKW 309
+H G +YTIGQR+G+ L G P+YV +KDVK N+++V V + W
Sbjct: 241 QHIGVMYYTIGQRKGINLSGMSEPYYVADKDVKKNILYVCSTSDQSYLHSTSCLVNDINW 300
Query: 310 LSGLPP--EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ + ++I++ +C+ + + ++++ ++D + + + + GQ A
Sbjct: 301 ILDVSKYVDDINQFECQAKFRYRQIDNKVVVKKIDDNNYQVI---FKKPLKAITIGQQAV 357
Query: 368 FYQGTRCIGSGVI 380
FY C+G VI
Sbjct: 358 FYLNDICLGGAVI 370
>gi|254480686|ref|ZP_05093933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[marine gamma proteobacterium HTCC2148]
gi|214039269|gb|EEB79929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[marine gamma proteobacterium HTCC2148]
Length = 363
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 205/367 (55%), Gaps = 21/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G++ ++K W ++D + C +ED A+AV D
Sbjct: 8 KVIVGMSGGVDSSVSALLLKEQGYAVEGLFMKNWEEDDGTEY---CTAKEDFADAQAVAD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + ++EYR GRTPNPD+LCN IKF AF+D ++ D +
Sbjct: 65 KLGIKLHGANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFKAFLDYALTLGADLI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY ++ ++ + L D KDQ+YFL + +L + +FP+G I K EVR
Sbjct: 125 ATGHYTRLGLAAGQ-----ATLLKGLDPNKDQSYFLHAVGHRELAKTLFPVGDIEKPEVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A ++DL +KDS GICF+G+ +FS+F+ +++ G I+ + G+ LG+H G ++
Sbjct: 180 SLAEEYDLATAKKKDSTGICFIGERRFSDFLQQYLPAQPGDIVSLD-GEHLGQHQGLMYH 238
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G PWYVVEKD+ NNV+ V++ + G + W++G
Sbjct: 239 TIGQRQGLGIGGLANHTDDPWYVVEKDLDNNVLLVAQGNDHPALFKSSLVTGEVFWVAGA 298
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + KVR+ +C + + GG V+ + + GQ FY G
Sbjct: 299 PPPLPLQCTAKVRYRQSDQSCTIT---EQKGGYQ---VEFDAPQRAITPGQSVVFYLGET 352
Query: 374 CIGSGVI 380
C+G GVI
Sbjct: 353 CLGGGVI 359
>gi|392308696|ref|ZP_10271230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas citrea NCIMB 1889]
Length = 366
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 207/379 (54%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 1 MSDNSHIKVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDNDEY---CAAAEDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ DY+A+GHY V D ++ V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADYIATGHY--VQREERDGKF---VMRRGLDDNKDQSYFLYTLSHEHIAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + G I E G +G
Sbjct: 173 EIEKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGKI-EDTDGLEVG 231
Query: 252 KHWGFWFYTIGQRQGLRLP------GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
H G ++T+GQR+GL + G PWYVV+KD+ NV+ V + RLF G
Sbjct: 232 DHEGLMYHTLGQRKGLLIGGMKEGNGEPWYVVDKDIARNVLVVGQG----KDHPRLFSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P+ R K R+ C L++ G + +A V E + +
Sbjct: 288 LNADQLHWVDRTGPQGTLRCTVKTRYRQTDIACTLLV-----GQDGLARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYLNDVCLGGGII 361
>gi|160915329|ref|ZP_02077542.1| hypothetical protein EUBDOL_01338 [Eubacterium dolichum DSM 3991]
gi|158433128|gb|EDP11417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Eubacterium dolichum DSM 3991]
Length = 387
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 213/381 (55%), Gaps = 28/381 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------CPWEEDMK 72
KV + LSGGVDS+VA LL AG+ T +++ W + CP E+D
Sbjct: 5 KVLLGLSGGVDSAVAAYLLKEAGYDVTCAFMRNWDAYANNDILGNPTISNEVCPQEQDFM 64
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AKAV +++++PL V EYW +V Y + EY GRTPNPD+LCN IKF AF++ +
Sbjct: 65 DAKAVAEKLELPLLRVDFVKEYWDHVFQYFLSEYEKGRTPNPDILCNKYIKFDAFLNYAN 124
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
M FD VA GHYA+V H K S L D KDQTYFL+ + Q L+ +FP+G
Sbjct: 125 KMGFDMVAMGHYAQVEHGP-----KESRLIRGADTNKDQTYFLAQVPQQSLQHALFPIGH 179
Query: 193 ISKEEVRKFATQFDLPN-KDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A + L + +KDS GICF+G+ F F++ ++ +G I++ E+ + +G
Sbjct: 180 LEKHEVRQIAKELHLDSVSAKKDSTGICFIGERNFKAFLSNYLPSKDGDIVDIESLEVIG 239
Query: 252 KHWGFWFYTIGQRQGLRLPG--GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR----VG 305
+H G +YTIGQR+GL + G GPW+VV KDV+ NV++V+ ++ LF V
Sbjct: 240 RHAGVLYYTIGQRKGLGIGGNKGPWFVVGKDVEKNVLYVTNG----NESDWLFTNSCIVS 295
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+ W S P E K R+ + +++ ++D N V+ S+ + +GQ
Sbjct: 296 GVNWFSNERPSEDYACTAKFRYRQA--DNAVVLRFIDD---NTVFVRYSQKVAAVTSGQE 350
Query: 366 AAFYQGTRCIGSGVILESWDD 386
A FYQ C+G GVI +++ D
Sbjct: 351 AVFYQNETCLGGGVIEDAFID 371
>gi|262402513|ref|ZP_06079074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio sp. RC586]
gi|262351295|gb|EEZ00428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio sp. RC586]
Length = 371
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 202/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPQNGE--KPQMLR-GLDNNKDQSYFLYTLSHEQVTRSLFPVGDLEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKESNEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C + + + I V+ + + GQ A FYQG
Sbjct: 305 TPITEPLRCSVKTRYRQSDIACTI----IPLSNDRIKVM-FDDPQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 ICLGGGIIEE 369
>gi|238749636|ref|ZP_04611141.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380]
gi|238712291|gb|EEQ04504.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380]
Length = 373
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/379 (38%), Positives = 208/379 (54%), Gaps = 35/379 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDGKSRLLR-GLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GKHVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCN---LMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P R K R+ C L E VE V+ E + GQ
Sbjct: 295 WVDRQPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVE--------VRFDEPVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVILESW 384
A FYQG C+G G+I E +
Sbjct: 347 AVFYQGEVCLGGGIIEERY 365
>gi|262274515|ref|ZP_06052326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Grimontia hollisae CIP 101886]
gi|262221078|gb|EEY72392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Grimontia hollisae CIP 101886]
Length = 370
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/381 (37%), Positives = 212/381 (55%), Gaps = 28/381 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+
Sbjct: 1 MSDNSSKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++++PL ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAQAVCDKLEIPLHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFAD 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+E DY+A GHY + + E + L D KDQ+YFL LS Q+ R +FP+G
Sbjct: 118 EVLEADYIAMGHYVRRTFPTKTGEKAQMLRGL--DSNKDQSYFLYTLSHDQVARSLFPVG 175
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A + L +KDS GICF+G+ KF++F+++++ G+I E G +G
Sbjct: 176 DLEKPEVRRIAEEQGLVTAKKKDSTGICFIGERKFTDFLSKYLPAQPGII-ETVDGKKIG 234
Query: 252 KHWGFWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
+H G ++T+GQR+GL + G PWYVV+KDV+ NV+ V++ + RLF
Sbjct: 235 EHQGLMYHTLGQRKGLHIGGQKGGNGNEAPWYVVDKDVERNVLIVAQGH----DHPRLFS 290
Query: 304 VG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQG 359
G L W+ E + K R+ +C IE ++ G+ I V+ E
Sbjct: 291 KGLIAAQLHWVDRKTMTEPLKCTVKTRYRQQDISCT--IEPID--GDQIKVI-FDEPQAA 345
Query: 360 LAAGQFAAFYQGTRCIGSGVI 380
+ GQ A FY G C+G G+I
Sbjct: 346 VTPGQSAVFYSGDVCLGGGII 366
>gi|261418420|ref|YP_003252102.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. Y412MC61]
gi|319767620|ref|YP_004133121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y412MC52]
gi|261374877|gb|ACX77620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y412MC61]
gi|317112486|gb|ADU94978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y412MC52]
Length = 371
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 205/371 (55%), Gaps = 18/371 (4%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
PH+ +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 5 PHET--RVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYED 59
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS 133
VC+Q+ +P V+ +YW V +Y + EY+ GRTPNPDV+CN IKF AF++ S
Sbjct: 60 VVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHAMS 119
Query: 134 MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
+ DY+A+GHYA+V D EYK + D KDQTYFL+ L QAQL +++FP+G +
Sbjct: 120 IGADYIATGHYARV--EFRDGEYK---MLRGADPNKDQTYFLNQLGQAQLSKVMFPIGHL 174
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K +VR+ A + L +KDS GICF+G+ F EF++ ++ GV ++ G+ G+H
Sbjct: 175 QKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLPAQPGV-MKTLDGEVKGRH 233
Query: 254 WGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
G +YTIGQR GL + G PW+VV KDV+ NV++V++ + + + + W+S
Sbjct: 234 DGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVS 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
PE R K R+ + + + + DGG + + + GQ FY G
Sbjct: 294 DRKPEAPFRCTAKFRYRQP--DVGVTVHPLADGGVEVV---FDAPARAVTPGQAVVFYNG 348
Query: 372 TRCIGSGVILE 382
C+G G I E
Sbjct: 349 EECLGGGTIDE 359
>gi|251789549|ref|YP_003004270.1| tRNA-specific 2-thiouridylase MnmA [Dickeya zeae Ech1591]
gi|247538170|gb|ACT06791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dickeya zeae Ech1591]
Length = 372
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 207/385 (53%), Gaps = 34/385 (8%)
Query: 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDM 71
SM KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+
Sbjct: 2 SMSDNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTEY---CSAATDL 58
Query: 72 KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-A 130
A+AVCD++ + L V+ EYW NV + + EYR GRTPNPD+LCN IKF AF++ A
Sbjct: 59 ADAQAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFA 118
Query: 131 ISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPL 190
+ DY+A+GHY + D + K +L D KDQ+YFL LS QL + +FP+
Sbjct: 119 AEDLGADYIATGHYVR----RHDIDGKSHLLR-GLDGNKDQSYFLYTLSHQQLAQSLFPV 173
Query: 191 GCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250
G + K +VRK A Q L +KDS GICF+G+ KF +F+AR++ G IL + G +
Sbjct: 174 GELEKPQVRKIAEQLSLATARKKDSTGICFIGERKFRDFLARYLPAQPGPILSVDDGKVM 233
Query: 251 GKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRV 304
G+H G ++T+GQR+GL + G PWYVV+KDV NV++V++ + + RL V
Sbjct: 234 GEHQGLMYHTLGQRKGLGIGGVKEGGDDPWYVVDKDVAGNVLYVAQGH----EHPRLMSV 289
Query: 305 G----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLM---IEHVEDGGENIAVVQLSEDD 357
G L W+ P R K R+ C L + +E V+ E
Sbjct: 290 GLIAQQLHWVDREPLAAPLRCTVKTRYRQADIPCLLTPLDADRIE--------VRFDEPV 341
Query: 358 QGLAAGQFAAFYQGTRCIGSGVILE 382
+ GQ A FY G C+G G+I E
Sbjct: 342 AAVTPGQSAVFYLGEVCLGGGIIEE 366
>gi|344940388|ref|ZP_08779676.1| tRNA-specific 2-thiouridylase mnmA [Methylobacter tundripaludum
SV96]
gi|344261580|gb|EGW21851.1| tRNA-specific 2-thiouridylase mnmA [Methylobacter tundripaludum
SV96]
Length = 363
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 198/368 (53%), Gaps = 21/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL GH T ++K W ++D +C ED+ A+ VCD
Sbjct: 4 KVIVGMSGGVDSSVTALLLLEQGHQVTGLFMKNWEEDDGTE---QCTAMEDLADAQQVCD 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L+ V+ EYW V + E++ GRTPNPD+LCN +KF AF++ AI + +Y
Sbjct: 61 KLGIELKTVNFAAEYWDEVFEVFLSEFKAGRTPNPDILCNKHVKFKAFLNYAIEDLGAEY 120
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+V S D EY L D K+Q+YFL L Q QL R +FP+G + K E+
Sbjct: 121 IATGHYARV--SEQDCEY---FLLKGLDPNKEQSYFLYTLGQKQLSRTLFPIGHLHKPEI 175
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + N +KDS GICF+G+ KF+EF+ R++ G + G +GKH G +
Sbjct: 176 RAMADKAGFANSRKKDSTGICFIGERKFTEFLQRYLPTQPGE-MRTPQGQHIGKHHGLMY 234
Query: 259 YTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + P PWYV+EKD++NN++ V + + L W S
Sbjct: 235 YTLGQRQGLGIGGVKNAPDEPWYVLEKDLENNILIVGQGHDHPLMLHNTLEASQLDWCSN 294
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P + R K R+ C+L E G + + + + GQ FY G
Sbjct: 295 RPLTKTIRCTAKTRYRQADQLCSL-----EPIGNDRCKAVFDQPQRAITPGQSVVFYDGE 349
Query: 373 RCIGSGVI 380
C+G G+I
Sbjct: 350 ICLGGGII 357
>gi|114332296|ref|YP_748518.1| tRNA-specific 2-thiouridylase MnmA [Nitrosomonas eutropha C91]
gi|122313046|sp|Q0ADM9.1|MNMA_NITEC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|114309310|gb|ABI60553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosomonas eutropha C91]
Length = 361
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 206/371 (55%), Gaps = 22/371 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W +D + + C +D A +V D
Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYDVIGLFMKNWEDDDTDEY---CSSRKDFLDAASVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+D+PLE V+ + EY + V S + EY+ GRTPNPDVLCN+ IKF AF+D ++ D++
Sbjct: 62 ILDIPLEAVNFSAEYRERVFSLFLAEYQAGRTPNPDVLCNSEIKFKAFLDHALALGADWI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + + L +D KDQ+YFL L+Q QL R IFP+G + K EVR
Sbjct: 122 ATGHYAQVHEINGQFQ-----LLKGEDGNKDQSYFLYRLNQQQLSRTIFPIGHLYKREVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A + LPN +KDS GICF+G+ F EF+ R++ G I + G +G+H G +Y
Sbjct: 177 KIAHKHGLPNSTKKDSTGICFIGERPFREFLNRYLPVDPGEIHTLD-GQIVGEHQGLMYY 235
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G PW+V KD++ NV++V + + R L W+SG
Sbjct: 236 TIGQRQGLGIGGIREGSEQPWFVSGKDMQTNVLYVVQGHDHPALLRSSLTAADLSWISGA 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLM-IEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
PP + K+R+ C ++ +EH + + + G+ GQ Y+
Sbjct: 296 PPHQSWVYAAKIRYRQTDAPCAIIRLEH------DSCQIGFAAPQWGVTPGQSVVIYESK 349
Query: 373 RCIGSGVILES 383
C+G G+I +S
Sbjct: 350 VCLGGGIITDS 360
>gi|163801953|ref|ZP_02195849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio sp. AND4]
gi|159174094|gb|EDP58902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio sp. AND4]
Length = 374
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 207/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGKKPQMLR-GLDSNKDQSYFLYTLSNEQIARSLFPVGNLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ R++ G I E G+ +G+H G +
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQGLMY 240
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD+K NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSEGLLASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 301 DREPIRDVMKCTVKTRYRQEDIPCTIV--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYE 355
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 356 GDVCLGGGII 365
>gi|346314627|ref|ZP_08856145.1| tRNA methyl transferase [Erysipelotrichaceae bacterium 2_2_44A]
gi|345906151|gb|EGX75882.1| tRNA methyl transferase [Erysipelotrichaceae bacterium 2_2_44A]
Length = 386
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 213/377 (56%), Gaps = 32/377 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW-------------FQEDFENFWTECP 66
KV + LSGGVDS+VA LL G+ T +++ W Q+D CP
Sbjct: 4 KVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDV------CP 57
Query: 67 WEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGA 126
E+D AKAV D++ +PL V EYW +V +Y +EEYR GRTPNPD+LCN IKF A
Sbjct: 58 QEQDYLDAKAVADKLGLPLLRVDFVKEYWDHVFTYFLEEYRKGRTPNPDILCNKYIKFDA 117
Query: 127 FMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRL 186
FMD + FD +A+GHYA+V HS+ + S + D KDQTYFL +SQ L+
Sbjct: 118 FMDYARRLGFDTLATGHYAQVDHSAEE-----SRMLRGADNNKDQTYFLCQVSQDALRHS 172
Query: 187 IFPLGCISKEEVRKFATQFDLPN-KDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAE 245
+FP+G + K+EVR+ A + +L + ++KDS GICF+G+ F EF+ ++ +G I++ E
Sbjct: 173 MFPVGHMEKQEVREIAERMELNSVAEKKDSTGICFIGERNFKEFLKNYLPSRDGDIMDIE 232
Query: 246 TGDFLGKHWGFWFYTIGQRQGLRLPG--GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
T + +G+H G +YTIGQR+GL + G GPW+VV KDV+ N+++V+ S
Sbjct: 233 TLEVVGRHSGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLHSDSCI 292
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
V + W S P+ K R+ + ++++ ++ E ++ + + AG
Sbjct: 293 VSGVNWFSSERPQGDYVCTAKFRYRQP--DNDVILRFID---ETTVFLRYPQMVSSVTAG 347
Query: 364 QFAAFYQGTRCIGSGVI 380
Q A FYQ C+G GVI
Sbjct: 348 QEAVFYQKEECLGGGVI 364
>gi|386308008|ref|YP_006004064.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Yersinia enterocolitica subsp. palearctica Y11]
gi|418240509|ref|ZP_12867048.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433549947|ref|ZP_20505991.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica IP
10393]
gi|318606118|emb|CBY27616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia enterocolitica subsp. palearctica Y11]
gi|351780140|gb|EHB22225.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431789082|emb|CCO69031.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica IP
10393]
Length = 373
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/379 (38%), Positives = 207/379 (54%), Gaps = 35/379 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL LS QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVNGKSRLLR-GLDGNKDQSYFLYTLSHEQLTQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQHVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCN---LMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P R K R+ C L E VE V+ E + GQ
Sbjct: 295 WVDREPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVE--------VRFDEPVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVILESW 384
A FYQG C+G G+I E +
Sbjct: 347 AVFYQGEVCLGGGIIEERY 365
>gi|254442923|ref|ZP_05056399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Verrucomicrobiae bacterium DG1235]
gi|198257231|gb|EDY81539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Verrucomicrobiae bacterium DG1235]
Length = 360
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 206/368 (55%), Gaps = 23/368 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDS+VA LL GH+ Y+K W ED +CPW++D++ A AV +
Sbjct: 3 KILVAMSGGVDSAVAALLLKEQGHAIEGAYMKNWINED--EILGDCPWQQDIEDAAAVAE 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P VV+L EY +V Y++ Y+ G TPNPDV+CN IKFG F+D FD V
Sbjct: 61 ALGIPFRVVNLMQEYRSRIVDYLLAGYQSGITPNPDVMCNREIKFGVFLDYALENGFDEV 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ + E +P + D KDQTYFL+ + Q+ R FP+G + K E+R
Sbjct: 121 ATGHYAQIRET----EDQPRAIIEGADPNKDQTYFLAKMRADQVARARFPVGHLLKPELR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A LPN +KDSQGICF+G IK S+F+ ++ + G I+ A+ LG+H G ++
Sbjct: 177 ELAQTASLPNAKKKDSQGICFIGNIKMSDFLREYVPDRPGPIIRADDDQTLGQHRGLHYF 236
Query: 260 TIGQRQGLRLPGGP----WYVVEKDVKNNVVFVSRNYYSFDKKRRLF----RVGSLKWLS 311
TIGQR+G+ +P + VV KD++ N + VS + L+ + SL + +
Sbjct: 237 TIGQRRGIGIPSNTDNEFYVVVGKDIQRNALLVS---FEAPTAPGLYSSRCEISSLSY-T 292
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G P + R++ KVR + + + I E I V + + LA GQ AFY+G
Sbjct: 293 GEPFPDDCRIEAKVR----YRDPRVAITCHRLSPETIEVT-FDQPQRALALGQIIAFYRG 347
Query: 372 TRCIGSGV 379
+ +G GV
Sbjct: 348 PQLLGGGV 355
>gi|238789081|ref|ZP_04632870.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC
33641]
gi|238722845|gb|EEQ14496.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC
33641]
Length = 373
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/379 (38%), Positives = 208/379 (54%), Gaps = 35/379 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDGKSRLLR-GLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQPMGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYV +KDV NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGDDPWYVADKDVANNILVVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCN---LMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P E R K R+ C L E VE V+ E + GQ
Sbjct: 295 WVDREPVTEAFRCVVKTRYRQQDIPCTVTPLDDERVE--------VRFDEPVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVILESW 384
A FYQG C+G G+I E +
Sbjct: 347 AVFYQGEVCLGGGIIEERY 365
>gi|332162070|ref|YP_004298647.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325666300|gb|ADZ42944.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860067|emb|CBX70393.1| tRNA-specific 2-thiouridylase mnmA [Yersinia enterocolitica W22703]
Length = 373
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 146/379 (38%), Positives = 207/379 (54%), Gaps = 35/379 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL LS QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVNGKSRLLR-GLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQHVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCN---LMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P R K R+ C L E VE V+ E + GQ
Sbjct: 295 WVDREPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVE--------VRFDEPVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVILESW 384
A FYQG C+G G+I E +
Sbjct: 347 AVFYQGEVCLGGGIIEERY 365
>gi|42560982|ref|NP_975433.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
gi|81400641|sp|Q6MTG1.1|MNMA_MYCMS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|42492479|emb|CAE77075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|301320545|gb|ADK69188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma mycoides subsp. mycoides SC str. Gladysdale]
Length = 375
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 207/373 (55%), Gaps = 18/373 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------CPWEEDMK 72
KV V LSGGVDSSVA LL G+ +++ W + CP E+D
Sbjct: 4 KVIVGLSGGVDSSVACYLLLEQGYEVEGLFMRNWDSATNNDILGNRNINDDICPQEQDYL 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAV D++++ L V EYW V SY IEEY+ RTPNPD+LCN IKF F++ AI
Sbjct: 64 DAKAVADKLNIKLYRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ + DY+A GHYAKV + +Y+ L + D KDQTYFLS L+Q QL + +FPL
Sbjct: 124 NQLNADYIAMGHYAKVEFNKTTNQYE---LIKASDTNKDQTYFLSQLNQKQLSKTLFPLA 180
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++KE+VRK A + +L ++KDS GICF+G+ F+ F+ +I G I++ +T LG
Sbjct: 181 NLTKEQVRKIALKQNLITANKKDSTGICFIGERSFTNFLQNYIPNQTGDIVDIKTNKVLG 240
Query: 252 KHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKW 309
+H G +YTIGQR+G+ L G P+YV +KDVK N+++V V + W
Sbjct: 241 QHIGVMYYTIGQRKGINLSGMSEPYYVADKDVKKNILYVCSTSDQSYLHSTSCLVNDINW 300
Query: 310 LSGLPP--EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ + ++I++ +C+ + + ++++ ++D + + + + GQ A
Sbjct: 301 ILDISKYVDDINQFECQAKFRYRQIDNKVVVKKIDDNNYQVI---FKKPLKAITIGQQAV 357
Query: 368 FYQGTRCIGSGVI 380
FY C+G VI
Sbjct: 358 FYLNDICLGGAVI 370
>gi|120554680|ref|YP_959031.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter aquaeolei VT8]
gi|205816919|sp|A1U1H5.1|MNMA_MARAV RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|120324529|gb|ABM18844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter aquaeolei VT8]
Length = 392
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 212/396 (53%), Gaps = 27/396 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W ++D + C D+ A+AV D
Sbjct: 14 RVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTEY---CTAMTDLADAQAVAD 70
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + L EYW V + + EY GRTPNPD+LCN +KF AF+D ++ DY+
Sbjct: 71 AIGIKLHTASFAAEYWDRVFEHFLSEYSAGRTPNPDILCNKEVKFRAFLDYAVTLGADYI 130
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D K +L+ D KDQ+YFL +S ++ R +FP+G + K EVR
Sbjct: 131 ATGHYTR-QRPLNDGSGKAQLLK-GLDPNKDQSYFLHAVSGERIARTLFPVGELEKPEVR 188
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + D+KDS GICF+G+ KF++F+ +++ G I E G +GKH G ++
Sbjct: 189 RIAEEQGFVTHDKKDSTGICFIGERKFTDFLKQYLPAQPGNI-ETPDGTVIGKHQGLMYH 247
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G PWYV EKD+K NV+ + + R G + W++G
Sbjct: 248 TIGQRQGLGIGGLAEFGDEPWYVAEKDLKRNVLIAVQGKHHPLLFSRGLVSGPVDWVAGE 307
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + R + K R+ +C + V DGG + + + + GQ FYQG
Sbjct: 308 PPAQKFRCKAKTRYRQPDQDCEVT---VIDGGVKVV---FDDAQRAVTPGQSVVFYQGEV 361
Query: 374 CIGSGVILESW-DDQGFPVCEKALEIARMEDKSKLG 408
C+G GVI ++W D++ P AR+E ++ G
Sbjct: 362 CLGGGVIEQTWRDNEALP--------ARLEHQASEG 389
>gi|87122222|ref|ZP_01078105.1| tRNA methyltransferase [Marinomonas sp. MED121]
gi|86162542|gb|EAQ63824.1| tRNA methyltransferase [Marinomonas sp. MED121]
Length = 377
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 133/375 (35%), Positives = 212/375 (56%), Gaps = 20/375 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K KV V +SGGVDSSV+ LL G+ ++K W ++D + C ++D+ A++
Sbjct: 16 KNTKVIVGMSGGVDSSVSALLLIQQGYQVEGLFMKNWDEDDGTEY---CTAKDDLADAQS 72
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VCD++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ +++
Sbjct: 73 VCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEYANALGA 132
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHY + H D + K L D KDQ+YFL + + ++ + +FP+G + K
Sbjct: 133 DYIATGHYVRRTHD--DNQAK---LLKGLDNNKDQSYFLYAVGKDEIAKSLFPVGELEKP 187
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + DL ++KDS GICF+G+ +F +F+ +++ G I E GD +G+H G
Sbjct: 188 EVRRLAQEHDLITHNKKDSTGICFIGERRFKDFLEQYLPAQPGDIKTLE-GDTIGRHSGL 246
Query: 257 WFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
++TIGQRQGL + G PWYVVEKD+ NNV+ V+++ + ++ W+
Sbjct: 247 MYHTIGQRQGLGIGGLANYSDEPWYVVEKDLDNNVLLVTQSSDDKPLYKTHLNASNMDWV 306
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+ + PE + K R+ +C I DG ++ V E + + GQ FY
Sbjct: 307 ARVAPELPLTCKAKCRYRQADQDC--TISANPDGSIEVSFV---EAQRAITPGQSVVFYL 361
Query: 371 GTRCIGSGVILESWD 385
C+G G+I +++
Sbjct: 362 DEECLGGGIINRAFN 376
>gi|343507766|ref|ZP_08745150.1| tRNA-specific 2-thiouridylase MnmA [Vibrio ichthyoenteri ATCC
700023]
gi|342796579|gb|EGU32254.1| tRNA-specific 2-thiouridylase MnmA [Vibrio ichthyoenteri ATCC
700023]
Length = 373
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/380 (38%), Positives = 210/380 (55%), Gaps = 23/380 (6%)
Query: 10 SCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE 69
+C+ QK KV V +SGGVDSSV+ LL G+ ++K W ++D E + C +
Sbjct: 4 NCTDNSQK--KVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDNEEY---CTAAQ 58
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D+ A+ VCD++ + L ++ EYW NV Y +EEY+ GRTPNPD+LCN IKF AF++
Sbjct: 59 DLADAQEVCDKLGIHLHKINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLE 118
Query: 130 -AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
A ++ DY+A GHY V S KP +L KD KDQ+YFL LS Q+ R +F
Sbjct: 119 YADEVLDADYIAMGHY--VDRSFPQNGEKPQMLR-GKDSNKDQSYFLYTLSHEQVARSLF 175
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G I K EVR+ A + L +KDS GICF+G+ KF++F+ R++ G I E G
Sbjct: 176 PVGQIEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLGRYLPAQPGKI-ETPEGL 234
Query: 249 FLGKHWGFWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRR 300
+G+H G ++T+GQR+GL + G PWYVVEKD+K NV+ + K
Sbjct: 235 VIGEHQGLMYHTLGQRKGLHIGGQKGGGGNEDPWYVVEKDLKRNVLIAVQGADHPLLKSN 294
Query: 301 LFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGL 360
L W+ P +E + K R+ C ++ V+D E I V+ E +
Sbjct: 295 GLVASQLHWVDRTPIKEPLKCTVKTRYRQTDIACTII--PVDD--ETIKVI-FDEPQVAV 349
Query: 361 AAGQFAAFYQGTRCIGSGVI 380
GQ A FYQG C+G G+I
Sbjct: 350 TPGQSAVFYQGDVCLGGGII 369
>gi|389815871|ref|ZP_10207119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Planococcus antarcticus DSM 14505]
gi|388465594|gb|EIM07910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Planococcus antarcticus DSM 14505]
Length = 372
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 204/363 (56%), Gaps = 16/363 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W D EN C ED + VC+
Sbjct: 10 RVVVGMSGGVDSSVAAYLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVIRVCN 66
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y +EEY+ GRTPNPDV+CN IKF AF++ S+ DY+
Sbjct: 67 QIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHALSLGADYL 126
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V H+ E + + KD KDQTYFL+ L Q+QL +++FP+G + K++VR
Sbjct: 127 ATGHYAQVEHA----ENGETKMLRGKDNNKDQTYFLNQLDQSQLSKVMFPIGHMEKKKVR 182
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS GICF+G+ F EF+ +++ G +E G +G H G +Y
Sbjct: 183 EIALEAGLATATKKDSTGICFIGERNFKEFLGQYLPAQPGG-METLEGVKMGSHDGLMYY 241
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQRQGL + G PW+V+ KD+K NV++V +N + +L + S P
Sbjct: 242 TIGQRQGLGIGGAGDPWFVIGKDLKKNVLYVGQNIHHDALFSDSLTAVNLSFTSNTAPTG 301
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
I L+C + + + +E ++ AVV +E + + GQ FY G C+G
Sbjct: 302 I--LECTAKFRYRQQDVGVSVEFKDE----RAVVTFTEPVRAITPGQAVVFYDGEECLGG 355
Query: 378 GVI 380
G I
Sbjct: 356 GTI 358
>gi|429083178|ref|ZP_19146224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter condimenti 1330]
gi|426547993|emb|CCJ72265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter condimenti 1330]
Length = 369
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 180 RRIAQELDLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDVIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLAIGGTKDGGEEPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ K R+ C V G++ V+ E + GQ A F
Sbjct: 295 WVNREAIAAPFTCTVKTRYRQTDIPCT-----VRPLGDDRIEVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQG C+G G+I
Sbjct: 350 YQGEVCLGGGII 361
>gi|91793184|ref|YP_562835.1| tRNA-specific 2-thiouridylase MnmA [Shewanella denitrificans OS217]
gi|91715186|gb|ABE55112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella denitrificans OS217]
Length = 377
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/375 (38%), Positives = 205/375 (54%), Gaps = 22/375 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K
Sbjct: 11 PIHNGKKVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMKNWEEDDTDEY---CAAADDLKD 67
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + + V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 68 AQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADD 127
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSK-DKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ DY+A GHY + +S SV L D KDQ+YFL LS Q+ R +FP+G
Sbjct: 128 ILDADYIAMGHYVRRRDNS-----DGSVQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVG 182
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR A Q L D+KDS GICF+G+ KF++F+A ++ G I E G+ +G
Sbjct: 183 ELEKHEVRDIAKQMGLITHDKKDSTGICFIGERKFTDFLATYLPAQPGDI-ETPEGEVIG 241
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
KH G ++T+GQR+GL + G PWYVVEKD+ NV+ V++ + V
Sbjct: 242 KHQGLMYHTLGQRKGLGIGGLKDSNEDPWYVVEKDLLRNVLIVAQGGNHPRLMSQGMTVN 301
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
L W+ P S+L K R+ C + D + I V+ + GQ
Sbjct: 302 QLHWVDRKGPATDSQLVVKTRYRQTDVPCRISF----DDPQRITVI-FDSPVAAVTPGQS 356
Query: 366 AAFYQGTRCIGSGVI 380
A FY G C+G G+I
Sbjct: 357 AVFYDGDVCLGGGII 371
>gi|406936197|gb|EKD69984.1| hypothetical protein ACD_46C00684G0003 [uncultured bacterium]
Length = 356
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 204/366 (55%), Gaps = 24/366 (6%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+ V LSGGVDSSV+ LL AGH A ++K W +D T+CP E+D+ A+ V D+
Sbjct: 8 IIVGLSGGVDSSVSAYLLKQAGHHIEAIFMKNWEGDD-----TDCPAEQDLADAEQVADK 62
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ + L +V+ +EYW+ V +Y ++EYR GRTPNPD+LCN IKF AF+D DY+A
Sbjct: 63 LGIELHMVNFANEYWERVFAYFLQEYRAGRTPNPDILCNKEIKFRAFLDYAKQRGADYIA 122
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHY + + E +L+ S D KDQ+YFL L+++Q+ + +FP+G + K EVRK
Sbjct: 123 TGHYVR----NQKTETSTQLLKGS-DPQKDQSYFLYALNESQIAQSVFPVGNLPKNEVRK 177
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + L N +KDS GICF+G+ KF F+ ++ G I E+ G+ LG H G FYT
Sbjct: 178 IAEKIGLKNHAKKDSTGICFIGERKFKTFLQEYLPAQPGKI-ESLDGEILGTHDGLMFYT 236
Query: 261 IGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
IGQRQGL++ G PWYV KD+ +NV+ V + + + L + W++ P
Sbjct: 237 IGQRQGLQIGGKKGKAELPWYVAGKDLHHNVLLVVQGDHPALYQSTLITT-QVHWINA-P 294
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + K R+ C +E + V + + + GQ FY G C
Sbjct: 295 PSLPLKAAAKTRYRQADQAC-----FIEKMDSHRYQVTFEQPQRAITPGQSIVFYTGEIC 349
Query: 375 IGSGVI 380
+G G+I
Sbjct: 350 LGGGII 355
>gi|410615577|ref|ZP_11326596.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola psychrophila 170]
gi|410164990|dbj|GAC40485.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola psychrophila 170]
Length = 376
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/369 (35%), Positives = 205/369 (55%), Gaps = 21/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K A+AV
Sbjct: 17 IKVVVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVS 73
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFD 137
D++ + L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A + D
Sbjct: 74 DKLGITLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEELSAD 133
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
Y+A+GHY + +++ + + D KDQ+YFL L + + + +FP+G + K +
Sbjct: 134 YIATGHYVQRSDKTSNWQMLRGL-----DDNKDQSYFLYTLGEQHIAQTLFPIGHLEKPK 188
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + DL D+KDS GICF+G+ KF +F+A+++ G I AE G +GKH G
Sbjct: 189 VREIALEQDLVTHDKKDSTGICFIGERKFKDFLAQYLPAQPGEIETAE-GKIIGKHEGLM 247
Query: 258 FYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
++T+GQR+GL + G PWYVV+KD++ NV+ V + R L W+
Sbjct: 248 YHTLGQRKGLLIGGMKEYGEEPWYVVDKDIERNVLIVGQGANHPRLYSRGLLANQLHWVD 307
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
P++ R K R+ C + + +V+ E + + GQ A FYQ
Sbjct: 308 RKGPQQAIRCSVKTRYRQQDIPC-----QITPNIDGTLLVEFDEPQKAVTPGQSAVFYQN 362
Query: 372 TRCIGSGVI 380
C+G G+I
Sbjct: 363 EICLGGGII 371
>gi|153000990|ref|YP_001366671.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS185]
gi|151365608|gb|ABS08608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella baltica OS185]
Length = 392
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 26 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 82
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 83 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 142
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 143 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 198
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 199 LEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 257
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 258 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 317
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 318 LHWVDRTGPVDGCHIAVKTRYRQQDVPCTLTYTD-----EHTLRVVFDEPVAAVTPGQSA 372
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 373 VFYDGEVCLGGGII 386
>gi|387889673|ref|YP_006319971.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Escherichia blattae DSM 4481]
gi|386924506|gb|AFJ47460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia blattae DSM 4481]
Length = 373
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 147/383 (38%), Positives = 209/383 (54%), Gaps = 29/383 (7%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
+S M KV V +SGGVDSSV+ LL G+ ++K W ++D E + C
Sbjct: 1 MSIPMSDNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAA 57
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
D+ A+AVCD++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF+
Sbjct: 58 ADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFL 117
Query: 129 D-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI 187
+ A + DY+A+GHY + D E +L D KDQ+YFL LS Q+ + +
Sbjct: 118 EFAAEDLGADYIATGHYVR----RQDSEGTTRLLR-GLDGNKDQSYFLYTLSHEQVAQSL 172
Query: 188 FPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETG 247
FP+G + K EVR+ A Q DL +KDS GICF+G+ KF EF+ R++ G I+ + G
Sbjct: 173 FPVGELEKPEVRRIAEQLDLATAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-G 231
Query: 248 DFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRL 301
D +G+H G ++T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL
Sbjct: 232 DEIGQHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGH----EHPRL 287
Query: 302 FRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD 357
VG L W+S P + R K R+ C V GE+ VQ
Sbjct: 288 MSVGLVAQQLHWVSREPLTRVLRCTVKTRYRQEDIPCT-----VTPLGEDRIEVQFDSPV 342
Query: 358 QGLAAGQFAAFYQGTRCIGSGVI 380
+ GQ A FY G C+G G+I
Sbjct: 343 AAVTPGQSAVFYDGEVCLGGGII 365
>gi|217973050|ref|YP_002357801.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS223]
gi|386341448|ref|YP_006037814.1| tRNA-specific 2-thiouridylase mnmA [Shewanella baltica OS117]
gi|205821978|sp|A3D5F8.2|MNMA_SHEB5 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|254811460|sp|B8E945.1|MNMA_SHEB2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|217498185|gb|ACK46378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella baltica OS223]
gi|334863849|gb|AEH14320.1| tRNA-specific 2-thiouridylase mnmA [Shewanella baltica OS117]
Length = 372
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 298 LHWVDRTGPVDGCHIAVKTRYRQQDVPCTLTYTD-----EHTLGVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>gi|339478038|ref|YP_004706858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Moranella endobia PCIT]
gi|338172589|gb|AEI74990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Moranella endobia PCIT]
Length = 370
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 200/379 (52%), Gaps = 28/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M + KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+
Sbjct: 1 MSNNSKKKVIVGMSGGVDSSVSAWLLQQQGYLVEGLFMKNWEEDDNEAY---CNAASDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCDQ+ + L V+ T EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DARAVCDQLGIILRTVNFTAEYWDNVFLHCLAEYKVGRTPNPDILCNKEIKFKAFLEFAT 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ D++A+GHY + S L+ D+ KDQ+YFL L QL R +FP+G
Sbjct: 118 EDLGADFIATGHYVRCTDVDGK-----SQLQRGLDQNKDQSYFLYTLCHEQLARCLFPIG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++K +VR A L D+KDS GICF+GK KF +F+ R++ + ++ + G LG
Sbjct: 173 TLAKPQVRYIAAALSLATADKKDSTGICFIGKRKFRDFLGRYLPPTQPGVIMSVNGQELG 232
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G +YT+GQR+GL + G PWYVVEKD NN + V++ ++ RL G
Sbjct: 233 RHQGLMYYTLGQRKGLGIGGTSDGSEDPWYVVEKDFDNNQLLVAQG----NQHPRLMSTG 288
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P R K R+ NC + + E V + +
Sbjct: 289 LIASRLHWVDREPLTAALRCTVKTRYRQPDINCMVTPQSAES-----LQVTFDQPVAAVT 343
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 344 PGQSAVFYVAEHCLGGGII 362
>gi|205821993|sp|A6WP69.2|MNMA_SHEB8 RecName: Full=tRNA-specific 2-thiouridylase MnmA
Length = 372
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 298 LHWVDRTGPVDGCHIAVKTRYRQQDVPCTLTYTD-----EHTLRVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>gi|374621992|ref|ZP_09694520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ectothiorhodospira sp. PHS-1]
gi|373941121|gb|EHQ51666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ectothiorhodospira sp. PHS-1]
Length = 376
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 204/385 (52%), Gaps = 20/385 (5%)
Query: 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDM 71
++P K +V V +SGGVDSSV+ LL G+ ++K W +D + C D+
Sbjct: 2 NLPRAK--RVIVGMSGGVDSSVSALLLMEQGYRVEGLFMKNWEDDDEPGY---CSAATDL 56
Query: 72 KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI 131
AK+VC ++++PL V+ T EYW V ++ ++EYR GRTPNPD+LCN IKF AF+D
Sbjct: 57 ADAKSVCAELEIPLHKVNFTKEYWDRVFAHFLQEYRLGRTPNPDILCNREIKFRAFLDYA 116
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
D +A+GHYA+V + D ++ L D KDQ+YFL L Q L R +FPLG
Sbjct: 117 LDKGADLIATGHYARV--DALDGRFR---LLQGLDAGKDQSYFLHALGQPALSRTLFPLG 171
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K VR A + N +KDS GICF+G+ +F +F+ R++ G I+ + G LG
Sbjct: 172 ELEKTRVRAIAARAGFENHAKKDSTGICFIGERRFRDFLMRYLPAQPGPIVSTD-GQALG 230
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G +YT GQRQGL + G PWYVV+KD+ N + V++ +
Sbjct: 231 EHQGLMYYTPGQRQGLGIGGVHGAAENPWYVVDKDMARNRLIVAQGHDHPALHAGGLVAT 290
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+ W++G PE Q K+R+ +C + E G + V+ + +A GQ
Sbjct: 291 EVNWIAGKAPEMPLHCQAKIRYRQAHQDCRVEPMPDEPGALH---VRFQHRQRAVAPGQS 347
Query: 366 AAFYQGTRCIGSGVILESWDDQGFP 390
FY G C+G G+I D P
Sbjct: 348 VVFYHGAECLGGGIIARKDTDARIP 372
>gi|343512882|ref|ZP_08749997.1| tRNA-specific 2-thiouridylase MnmA [Vibrio scophthalmi LMG 19158]
gi|343513958|ref|ZP_08751046.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sp. N418]
gi|342794322|gb|EGU30095.1| tRNA-specific 2-thiouridylase MnmA [Vibrio scophthalmi LMG 19158]
gi|342801088|gb|EGU36579.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sp. N418]
Length = 373
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 209/380 (55%), Gaps = 23/380 (6%)
Query: 10 SCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE 69
+C+ QK KV V +SGGVDSSV+ LL G+ ++K W ++D E + C +
Sbjct: 4 NCTDNSQK--KVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDNEEY---CTAAQ 58
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D+ A+ VCD++ + L ++ EYW NV Y +EEY+ GRTPNPD+LCN IKF AF++
Sbjct: 59 DLADAQEVCDKLGIHLHKINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLE 118
Query: 130 -AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
A ++ DY+A GHY V S KP +L KD KDQ+YFL LS Q+ R +F
Sbjct: 119 YADEVLDADYIAMGHY--VDRSFPQNGEKPQMLR-GKDSNKDQSYFLYTLSHEQVGRSLF 175
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G I K EVR+ A + L +KDS GICF+G+ KF++F+ R++ G I E G
Sbjct: 176 PVGQIEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLGRYLPAQPGKI-ETPEGQ 234
Query: 249 FLGKHWGFWFYTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRR 300
+G+H G ++T+GQR+GL + G PWYV EKD+K NV+ + K
Sbjct: 235 VIGEHQGLMYHTLGQRKGLHIGGQKGGGGNEEPWYVAEKDLKRNVLIAVQGADHPLLKSN 294
Query: 301 LFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGL 360
L W+ P +E + K R+ C ++ V+D E I V+ E +
Sbjct: 295 GLVASQLHWVDRTPIKEPLKCTVKTRYRQTDIACTII--PVDD--ETIKVI-FDEPQVAV 349
Query: 361 AAGQFAAFYQGTRCIGSGVI 380
GQ A FYQG C+G G+I
Sbjct: 350 TPGQSAVFYQGDVCLGGGII 369
>gi|429090892|ref|ZP_19153594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter dublinensis 1210]
gi|426744547|emb|CCJ79707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter dublinensis 1210]
Length = 369
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 209/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD LG+H G +
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDTLGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+S P K R+ C + ++D + V+ E + GQ A F
Sbjct: 295 WVSREPVTAPFSCTVKTRYRQTDIPCT--VRPLDD---DRIEVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y+G C+G G+I
Sbjct: 350 YRGDVCLGGGII 361
>gi|414593049|ref|ZP_11442697.1| tRNA-specific 2-thiouridylase MnmA [Escherichia blattae NBRC
105725]
gi|403195882|dbj|GAB80349.1| tRNA-specific 2-thiouridylase MnmA [Escherichia blattae NBRC
105725]
Length = 384
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 147/383 (38%), Positives = 209/383 (54%), Gaps = 29/383 (7%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
+S M KV V +SGGVDSSV+ LL G+ ++K W ++D E + C
Sbjct: 12 VSIPMSDNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAA 68
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
D+ A+AVCD++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF+
Sbjct: 69 ADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFL 128
Query: 129 D-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI 187
+ A + DY+A+GHY + D E +L D KDQ+YFL LS Q+ + +
Sbjct: 129 EFAAEDLGADYIATGHYVR----RQDSEGTTRLLR-GLDGNKDQSYFLYTLSHEQVAQSL 183
Query: 188 FPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETG 247
FP+G + K EVR+ A Q DL +KDS GICF+G+ KF EF+ R++ G I+ + G
Sbjct: 184 FPVGELEKPEVRRIAEQLDLATAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-G 242
Query: 248 DFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRL 301
D +G+H G ++T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL
Sbjct: 243 DEIGQHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGH----EHPRL 298
Query: 302 FRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD 357
VG L W+S P + R K R+ C V GE+ VQ
Sbjct: 299 MSVGLVAQQLHWVSREPLTRVLRCTVKTRYRQEDIPCT-----VTPLGEDRIEVQFDSPV 353
Query: 358 QGLAAGQFAAFYQGTRCIGSGVI 380
+ GQ A FY G C+G G+I
Sbjct: 354 AAVTPGQSAVFYDGEVCLGGGII 376
>gi|260772624|ref|ZP_05881540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio metschnikovii CIP 69.14]
gi|260611763|gb|EEX36966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio metschnikovii CIP 69.14]
Length = 372
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 204/368 (55%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIYLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + Q KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPT--QGEKPQMLR-GLDSNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV EKD++ NV+ + K + L W+S
Sbjct: 245 HTLGQRKGLHIGGLKDGSEQPWYVAEKDLQRNVLIAVQGADHPLLKSQGLVASQLHWVSR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
E +R K R+ C + + +NI V+ E + GQ A FYQG
Sbjct: 305 QTITEPTRCTVKTRYRQTDIACTI----IPLDEQNIKVM-FDEPQIAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVI 380
C+G G+I
Sbjct: 360 VCLGGGII 367
>gi|238791830|ref|ZP_04635467.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909]
gi|238728934|gb|EEQ20451.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909]
Length = 373
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 207/379 (54%), Gaps = 35/379 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDGKSRLLR-GLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQHMGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGDDPWYVVDKDVANNILLVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCN---LMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P R K R+ C L E VE V+ + GQ
Sbjct: 295 WVDRQPITAAFRCVVKTRYRQQDIPCTVTPLDNERVE--------VRFDNPVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVILESW 384
A FYQG C+G G+I E +
Sbjct: 347 AVFYQGEVCLGGGIIEERY 365
>gi|205822016|sp|Q12N64.2|MNMA_SHEDO RecName: Full=tRNA-specific 2-thiouridylase MnmA
Length = 372
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 143/380 (37%), Positives = 207/380 (54%), Gaps = 22/380 (5%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
++ P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C
Sbjct: 1 MTSIKPIHNGKKVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMKNWEEDDTDEY---CAAA 57
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
+D+K A+AVCD++ + + V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF+
Sbjct: 58 DDLKDAQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFL 117
Query: 129 D-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSK-DKVKDQTYFLSHLSQAQLKRL 186
+ A ++ DY+A GHY + +S SV L D KDQ+YFL LS Q+ R
Sbjct: 118 EFADDILDADYIAMGHYVRRRDNS-----DGSVQMLRGVDGNKDQSYFLYTLSHEQVARS 172
Query: 187 IFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAET 246
+FP+G + K EVR A Q L D+KDS GICF+G+ KF++F+A ++ G I E
Sbjct: 173 LFPVGELEKHEVRDIAKQMGLITHDKKDSTGICFIGERKFTDFLATYLPAQPGDI-ETPE 231
Query: 247 GDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRR 300
G+ +GKH G ++T+GQR+GL + G PWYVVEKD+ NV+ V++ +
Sbjct: 232 GEVIGKHQGLMYHTLGQRKGLGIGGLKDSNEDPWYVVEKDLLRNVLIVAQGGNHPRLMSQ 291
Query: 301 LFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGL 360
V L W+ P S+L K R+ C + D + I V+ +
Sbjct: 292 GMTVNQLHWVDRKGPATDSQLVVKTRYRQTDVPCRISF----DDPQRITVI-FDSPVAAV 346
Query: 361 AAGQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 347 TPGQSAVFYDGDVCLGGGII 366
>gi|433655613|ref|YP_007299321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293802|gb|AGB19624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 372
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 211/377 (55%), Gaps = 29/377 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+ K +KV V +SGGVDSSV+ LL G+ ++K W +ED + C ED +
Sbjct: 2 IESNKDIKVVVGMSGGVDSSVSALLLKEQGYDVVGIFMKNWDEEDDSGY---CTAAEDYE 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VCD++ +P ++ T EYW V Y ++EYR GRTPNPDV+CN IKF AF+D
Sbjct: 59 DVVRVCDKIGIPYYSINFTQEYWDRVFKYFLDEYRSGRTPNPDVMCNKEIKFKAFLDFSL 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ +S+ V DK KDQTYFL L Q QL + +FP+G
Sbjct: 119 KIGADYIATGHYARIEYSNGKYRMLKGV-----DKNKDQTYFLCELDQKQLSKTMFPIGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A + L D+KDS GICF+G+ KF EF+ + + G I + +G LGK
Sbjct: 174 LNKSEVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLPAQPGEIRDL-SGRVLGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRN-----YYSFDKKRRLFR 303
H G FYT+GQR+GL + G PW+VV+KDV+NN+++V++ YS+ LF
Sbjct: 233 HDGLMFYTLGQRRGLGIGGIGTGEPWFVVDKDVENNILYVAQGEKNPALYSY----ALF- 287
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
+ W+ + R + K R+ + ++ + +DG V + + + G
Sbjct: 288 TKDVNWIDNSIEADTFRCKAKFRYRQP--DQDVTVYAKDDG----YFVVFDKPQRAVTPG 341
Query: 364 QFAAFYQGTRCIGSGVI 380
QF FY G C+G GVI
Sbjct: 342 QFVVFYDGEYCLGGGVI 358
>gi|126174691|ref|YP_001050840.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS155]
gi|125997896|gb|ABN61971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella baltica OS155]
Length = 392
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 26 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 82
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 83 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 142
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 143 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 198
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 199 LEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 257
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 258 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 317
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 318 LHWVDRTGPVDGCHIAVKTRYRQQDVPCTLTYTD-----EHTLGVVFDEPVAAVTPGQSA 372
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 373 VFYDGEVCLGGGII 386
>gi|442611345|ref|ZP_21026051.1| tRNA-specific 2-thiouridylase MnmA [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
gi|441747273|emb|CCQ12113.1| tRNA-specific 2-thiouridylase MnmA [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
Length = 366
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 207/379 (54%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 1 MSDNSHIKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVC+++ + L V+ EYW NV Y +EEY+ GRTPNPD++CN IKF AF+ A
Sbjct: 58 DAQAVCEKLGIELHTVNFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLQFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ DY+A+GHY + D+ + D KDQ+YFL LS + + +FP+G
Sbjct: 118 EALGADYIATGHYVR-----RDERNGKFAMIRGLDDNKDQSYFLYTLSHEHIAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVR+ A + L D+KDS GICF+G+ KF +F+ R++ G I + E G +G
Sbjct: 173 HIEKPEVRRIAEEQGLITHDKKDSTGICFIGERKFKDFLQRYLPAQPGNIEDTE-GQVVG 231
Query: 252 KHWGFWFYTIGQRQGLRLP------GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD+ NV+ V + RL+ G
Sbjct: 232 QHAGLMYHTLGQRKGLLIGGMKEGNGEPWYVVDKDIARNVLVVGQG----SDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ C L++ G + +A V + +
Sbjct: 288 LNANQLHWVDRVGPKGTTRCTVKTRYRQTDIPCTLLV-----GEDGMARVLFDTPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYVDDVCLGGGII 361
>gi|254506120|ref|ZP_05118264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus 16]
gi|219550938|gb|EED27919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus 16]
Length = 374
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 205/373 (54%), Gaps = 22/373 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAK---VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A GHY + D KP +L D KDQ+YFL LS Q+ R +FP+G + K
Sbjct: 125 IAMGHYVRRTFPTQEELDAGAKPEMLR-GLDSNKDQSYFLYTLSSDQVARSLFPVGELEK 183
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + DL +KDS GICF+G+ KF+EF+ +++ G I E G +GKH G
Sbjct: 184 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGNI-ETPEGKVIGKHQG 242
Query: 256 FWFYTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
++T+GQR+GL + G PW+V +KD+K NV+ + K L
Sbjct: 243 LMYHTLGQRKGLHIGGQKGGGGNEEPWFVGDKDLKRNVLIAVQGKDHPLLKSEGLIASQL 302
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+ P ++ + K R+ C ++ ++D ENI V+ E + GQ A
Sbjct: 303 HWVDRTPITDVLKCTVKTRYRQTDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAV 357
Query: 368 FYQGTRCIGSGVI 380
FYQG C+G G+I
Sbjct: 358 FYQGEVCLGGGII 370
>gi|400405087|ref|YP_006587946.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[secondary endosymbiont of Ctenarytaina eucalypti]
gi|400363450|gb|AFP84518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[secondary endosymbiont of Ctenarytaina eucalypti]
Length = 362
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 202/368 (54%), Gaps = 21/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C E D+ A+ VC
Sbjct: 8 KVIVAISGGVDSSVSAWLLQKQGYQVEGLFMKNWEEDDHEEY---CAAERDLVTAREVCG 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
+D+ L ++ + EYW NV ++ + EY+ GRTPNPD+LCN IKF AF++ AI ++ D+
Sbjct: 65 ALDITLHTINFSAEYWDNVFTHFLVEYQSGRTPNPDILCNKEIKFKAFLEFAIENLGGDF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L AQL R +FPLG + K +V
Sbjct: 125 IATGHYVR----RADVAGKSRLLR-GLDDNKDQSYFLYTLGHAQLSRCLFPLGGLVKPKV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+FA + L ++KDS GICF+GK KF +F+ R++ G ++ + G +G H G +
Sbjct: 180 RRFAAELGLSTAEKKDSTGICFIGKRKFRDFLGRYLPRQPGEMISVD-GRKVGCHQGLMY 238
Query: 259 YTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQR+GL + G PWYVVEKD NN + V++ + F L W+
Sbjct: 239 YTLGQRKGLGIGGIRNSSGDPWYVVEKDTVNNRLIVAQGHNHSRLMSASFIADQLHWIDR 298
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E + K R+ NC ++ + G V + GQ A FY
Sbjct: 299 EPLTEKRDCKVKTRYRQSDINC--LVTPLPSGR---CQVVFESPVAAVTPGQSAVFYLAE 353
Query: 373 RCIGSGVI 380
RC+G G+I
Sbjct: 354 RCLGGGII 361
>gi|330828858|ref|YP_004391810.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Aeromonas veronii B565]
gi|406677932|ref|ZP_11085112.1| tRNA-specific 2-thiouridylase mnmA [Aeromonas veronii AMC35]
gi|423210456|ref|ZP_17197010.1| tRNA-specific 2-thiouridylase mnmA [Aeromonas veronii AER397]
gi|328803994|gb|AEB49193.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Aeromonas veronii B565]
gi|404616344|gb|EKB13302.1| tRNA-specific 2-thiouridylase mnmA [Aeromonas veronii AER397]
gi|404623739|gb|EKB20589.1| tRNA-specific 2-thiouridylase mnmA [Aeromonas veronii AMC35]
Length = 368
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 212/379 (55%), Gaps = 30/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+
Sbjct: 1 MTDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEY---CSAAQDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAVCD++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAKAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ Y+A+GHY + S+ +P +L D KDQ+YFL LS+ Q+ + +FP+G
Sbjct: 118 EELGATYIATGHYVRRDDSTG----RPRLLR-GLDTNKDQSYFLYTLSEKQVGQSLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A Q DL +KDS GICF+G+ KF +F+A+ + G I E G +G
Sbjct: 173 DLEKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLPAQPGKI-ETVDGKVIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G WYVV+K+V+ NV+ V++ + RL+ G
Sbjct: 232 EHQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNVLVVAQGEHP-----RLYSDG 286
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P E R K R+ C +I+ ++D E I V+ E +
Sbjct: 287 LIASQLHWVDRTPIREPRRCTVKTRYRQQDIPC--LIQPIDD--ETIRVI-FDEKQAAVT 341
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 342 PGQSAVFYDGEVCLGGGII 360
>gi|160875703|ref|YP_001555019.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS195]
gi|378708903|ref|YP_005273797.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Shewanella baltica OS678]
gi|160861225|gb|ABX49759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella baltica OS195]
gi|315267892|gb|ADT94745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella baltica OS678]
Length = 392
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 26 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 82
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 83 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 142
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 143 ILDADYIAMGHYVR----RRDNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 198
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 199 LEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 257
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 258 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 317
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 318 LHWVDRTGPIDGCHIAVKTRYRQQDVPCTLTYTD-----EHTLRVVFDEPVAAVTPGQSA 372
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 373 VFYDGEVCLGGGII 386
>gi|313899166|ref|ZP_07832687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium sp. HGF2]
gi|312956035|gb|EFR37682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium sp. HGF2]
Length = 393
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 213/377 (56%), Gaps = 32/377 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW-------------FQEDFENFWTECP 66
KV + LSGGVDS+VA LL G+ T +++ W Q+D CP
Sbjct: 11 KVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDV------CP 64
Query: 67 WEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGA 126
E+D AKAV D++ +PL V EYW +V +Y +EEYR GRTPNPD+LCN IKF A
Sbjct: 65 QEQDYLDAKAVADKLGLPLLRVDFVKEYWDHVFTYFLEEYRKGRTPNPDILCNKYIKFDA 124
Query: 127 FMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRL 186
FMD + FD +A+GHYA+V HS+ + S + D KDQTYFL +SQ L+
Sbjct: 125 FMDYARRLGFDTLATGHYAQVDHSAEE-----SRMLRGADNNKDQTYFLCQVSQDALRHS 179
Query: 187 IFPLGCISKEEVRKFATQFDLPN-KDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAE 245
+FP+G + K+EVR+ A + +L + ++KDS GICF+G+ F EF+ ++ +G I++ +
Sbjct: 180 MFPIGHMEKQEVREIAERMELNSVAEKKDSTGICFIGERNFKEFLKNYLPSRDGDIMDIK 239
Query: 246 TGDFLGKHWGFWFYTIGQRQGLRLPG--GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
T + +G+H G +YTIGQR+GL + G GPW+VV KDV+ N+++V+ S
Sbjct: 240 TLEVVGRHSGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLHSDSCI 299
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
V + W S P+ K R+ + ++++ ++ E ++ + + AG
Sbjct: 300 VSGVNWFSSERPQGDYVCTAKFRYRQP--DNDVILRFID---ETTVFLRYPQMVSSVTAG 354
Query: 364 QFAAFYQGTRCIGSGVI 380
Q A FYQ C+G GVI
Sbjct: 355 QEAVFYQKEECLGGGVI 371
>gi|88860122|ref|ZP_01134761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas tunicata D2]
gi|88818116|gb|EAR27932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas tunicata D2]
Length = 366
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 137/379 (36%), Positives = 207/379 (54%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K
Sbjct: 1 MSDNSNIKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDEY---CAAADDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVC+++ +PL V+ EYW NV Y +EEY+ GRTPNPD++CN IKF AF+ A
Sbjct: 58 DAQAVCEKLGIPLHTVNFASEYWDNVFQYFLEEYKAGRTPNPDIMCNKEIKFKAFLQFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + + V+ D KDQ+YFL LS L + +FP+G
Sbjct: 118 EALNADFIATGHYVR-----RELRGDKYVMIRGDDDNKDQSYFLYTLSHEHLAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVR+ A + +L D+KDS GICF+G+ KF +F+ + + G I E G+ +G
Sbjct: 173 EIEKPEVRRIAEEQNLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGKI-EDTDGNVVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
H G ++T+GQR+GL + G PWYVV+KD+ NV+ V + RL+ G
Sbjct: 232 DHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLIRNVLVVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ R K R+ C L++ G + A V + ++ +
Sbjct: 288 LMANQLHWVDRVGPKTTLRCTVKTRYRQTDLPCTLLV-----GDDGYARVLFDQPEKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYLNEVCLGGGII 361
>gi|373123940|ref|ZP_09537783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 21_3]
gi|422327101|ref|ZP_16408128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 6_1_45]
gi|371660135|gb|EHO25392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 21_3]
gi|371664151|gb|EHO29332.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 6_1_45]
Length = 386
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 213/377 (56%), Gaps = 32/377 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW-------------FQEDFENFWTECP 66
KV + LSGGVDS+VA LL G+ T +++ W Q+D CP
Sbjct: 4 KVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDV------CP 57
Query: 67 WEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGA 126
E+D AKAV D++ +PL V EYW +V +Y +EEYR GRTPNPD+LCN IKF A
Sbjct: 58 QEQDYLDAKAVADKLGLPLLRVDFVKEYWDHVFTYFLEEYRKGRTPNPDILCNKYIKFDA 117
Query: 127 FMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRL 186
FMD + FD +A+GHYA+V HS+ + S + D KDQTYFL +SQ L+
Sbjct: 118 FMDYARRLGFDTLATGHYAQVDHSAEE-----SRMLRGADNNKDQTYFLCQVSQDALRHS 172
Query: 187 IFPLGCISKEEVRKFATQFDLPN-KDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAE 245
+FP+G + K+EVR+ A + +L + ++KDS GICF+G+ F EF+ ++ +G I++ +
Sbjct: 173 MFPIGHMEKQEVREIAERMELNSVAEKKDSTGICFIGERNFKEFLKNYLPSRDGDIMDIK 232
Query: 246 TGDFLGKHWGFWFYTIGQRQGLRLPG--GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
T + +G+H G +YTIGQR+GL + G GPW+VV KDV+ N+++V+ S
Sbjct: 233 TLEVVGRHSGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLHSDSCI 292
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
V + W S P+ K R+ + ++++ ++ E ++ + + AG
Sbjct: 293 VSGVNWFSSERPQGDYVCTAKFRYRQP--DNDVILRFID---ETTVFLRYPQMVSSVTAG 347
Query: 364 QFAAFYQGTRCIGSGVI 380
Q A FYQ C+G GVI
Sbjct: 348 QEAVFYQKEECLGGGVI 364
>gi|421350904|ref|ZP_15801269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-25]
gi|395951349|gb|EJH61963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HE-25]
Length = 371
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 200/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 305 TPITGPVRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 ICLGGGIIEE 369
>gi|373949808|ref|ZP_09609769.1| tRNA-specific 2-thiouridylase mnmA [Shewanella baltica OS183]
gi|386324359|ref|YP_006020476.1| tRNA-specific 2-thiouridylase mnmA [Shewanella baltica BA175]
gi|333818504|gb|AEG11170.1| tRNA-specific 2-thiouridylase mnmA [Shewanella baltica BA175]
gi|373886408|gb|EHQ15300.1| tRNA-specific 2-thiouridylase mnmA [Shewanella baltica OS183]
Length = 372
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 298 LHWVDRTGPIDGCHIAVKTRYRQQDVPCTLTYTD-----EHTLRVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>gi|304317430|ref|YP_003852575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778932|gb|ADL69491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 372
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/376 (38%), Positives = 210/376 (55%), Gaps = 27/376 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+ K +KV V +SGGVDSSV+ LL G+ ++K W +ED + C ED +
Sbjct: 2 IESNKNIKVVVGMSGGVDSSVSALLLKEQGYDVVGIFMKNWDEEDDSGY---CTAAEDYE 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VCD++ +P ++ T EYW V Y ++EYR GRTPNPDV+CN IKF AF+D
Sbjct: 59 DVVRVCDKIGIPYYSINFTQEYWDRVFKYFLDEYRSGRTPNPDVMCNKEIKFKAFLDFSL 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ +S+ V DK KDQTYFL L Q QL + IFP+G
Sbjct: 119 KIGADYIATGHYARIEYSNGKYRMLKGV-----DKNKDQTYFLCELGQKQLSKTIFPIGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A + L D+KDS GICF+G+ KF EF+ + + G I + +G LGK
Sbjct: 174 LNKFEVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLPAKPGEIRDL-SGRVLGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG--- 305
H G FYT+GQR+GL + G PW+VV+KDV+NN+++V++ +K L+
Sbjct: 233 HDGLMFYTLGQRRGLGIGGIGTGEPWFVVDKDVENNILYVAQG----EKNPALYSYALFT 288
Query: 306 -SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQ 364
+ W+ + R + K R+ + ++ + +DG V + + + GQ
Sbjct: 289 KDVNWIDNSIEADTFRCKAKFRYRQP--DQDVTVYAKDDG----YFVVFDKPQRAVTPGQ 342
Query: 365 FAAFYQGTRCIGSGVI 380
F FY G C+G GVI
Sbjct: 343 FVVFYDGEYCLGGGVI 358
>gi|418024727|ref|ZP_12663709.1| tRNA-specific 2-thiouridylase mnmA [Shewanella baltica OS625]
gi|205821998|sp|A9L4G9.2|MNMA_SHEB9 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|353536013|gb|EHC05573.1| tRNA-specific 2-thiouridylase mnmA [Shewanella baltica OS625]
Length = 372
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 298 LHWVDRTGPIDGCHIAVKTRYRQQDVPCTLTYTD-----EHTLRVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>gi|54297299|ref|YP_123668.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila str.
Paris]
gi|81601865|sp|Q5X5H6.1|MNMA_LEGPA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|53751084|emb|CAH12495.1| hypothetical protein lpp1344 [Legionella pneumophila str. Paris]
Length = 361
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 205/370 (55%), Gaps = 26/370 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL G+ ++K W Q+D +F CP +D+ A+AVC+
Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHNDF---CPAAKDLADAQAVCN 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +PL V+ + EYW V +Y + EY GRTPNPDVLCN IKF AF++ ++ DY+
Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGADYI 120
Query: 140 ASGHYAK-VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYAK + S +K +KD+ KDQTYFL + L + IFP+G +K ++
Sbjct: 121 ATGHYAKNTIEGSIGYLFK------AKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQI 174
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+FA Q L +KDS GICF+G+ +F F+ I G I ++ G LG+H G F
Sbjct: 175 REFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFILAKPGEI-KSTGGKTLGQHDGLMF 233
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + G PWYVV+KD+ +N ++V++ + G + WL+
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293
Query: 313 LPPEEISRLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
E L C K R+ C MI ++ N+ V S + + GQF FY+
Sbjct: 294 Y--ENHLPLTCFAKTRYRQTDQAC--MISPPDN---NLHYVIFSSPQRAITPGQFIVFYE 346
Query: 371 GTRCIGSGVI 380
+C+G I
Sbjct: 347 KNQCLGGATI 356
>gi|347753083|ref|YP_004860648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus coagulans 36D1]
gi|347585601|gb|AEP01868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus coagulans 36D1]
Length = 371
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 200/366 (54%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 6 KDTRVVVGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++ ++
Sbjct: 63 VCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHALNLGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA+V H D EYK + D KDQTYFL+ L Q QL R++FP+G + K
Sbjct: 123 DYLATGHYARVTHQ--DGEYK---MLRGVDGNKDQTYFLNQLGQYQLSRVMFPIGDLEKP 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
VR+ A + L ++KDS GICF+G+ F EF++ ++ +G +++ G +G+H G
Sbjct: 178 RVREIAKEAGLATANKKDSTGICFIGERNFKEFLSHYLPAQKG-LMKTLDGKVMGEHEGL 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+YTIGQR GL + G PW+ V KD+K NV++V + ++ W+SG
Sbjct: 237 MYYTIGQRHGLGIGGSGEPWFAVGKDLKENVLYVEQGFHHPALYSDYMTGVKANWVSGKK 296
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P E+ R K R+ + + G + + V+ E + + GQ FY G C
Sbjct: 297 PPEVFRCTAKFRYRQPDQKVTVQLL----GNDEVKVI-YDEPVRAVTPGQAVVFYNGEEC 351
Query: 375 IGSGVI 380
+G I
Sbjct: 352 LGGATI 357
>gi|254291552|ref|ZP_04962342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae AM-19226]
gi|150422504|gb|EDN14461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae AM-19226]
Length = 372
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 200/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 70 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 186
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 245
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 246 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 305
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 306 TPITGPVRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 360
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 361 ICLGGGIIEE 370
>gi|440230543|ref|YP_007344336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Serratia marcescens FGI94]
gi|440052248|gb|AGB82151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Serratia marcescens FGI94]
Length = 370
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDGKSRLLR-GVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQTIGQHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NNV+ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++ E V+ E + GQ A F
Sbjct: 295 WVDRQPLTAPLRCTVKTRYRQQDLPCT--ITPID---EQRIEVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQG C+G G+I
Sbjct: 350 YQGEICLGGGII 361
>gi|157375020|ref|YP_001473620.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sediminis HAW-EB3]
gi|189040509|sp|A8FUG9.1|MNMA_SHESH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|157317394|gb|ABV36492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella sediminis HAW-EB3]
Length = 372
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 210/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A ++ DY
Sbjct: 70 KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFADDILDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + +D+ + +L +D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVR----RSDESGQSQMLR-GRDGNKDQSYFLYTLSHEQISRSLFPVGELEKSEV 184
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ KF++F++ + G I AE G+ +GKH G +
Sbjct: 185 REIAKEMGLVTHDKKDSTGICFIGERKFTDFLSTFLPAQPGNIETAE-GEIIGKHQGLMY 243
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+K++ NV+ V + + RL VG L
Sbjct: 244 HTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGH----HPRLMSVGFYADQLH 299
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + +++ K R+ C L E G + I V+ E + GQ A F
Sbjct: 300 WVDRKGPIDGAQITVKTRYRQRDVACTLTYE----GDDRIKVI-FDEPVAAVTPGQSAVF 354
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 355 YDAELCLGGGII 366
>gi|422416013|ref|ZP_16492970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua FSL J1-023]
gi|313623686|gb|EFR93838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua FSL J1-023]
Length = 371
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 203/368 (55%), Gaps = 16/368 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED + V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYEDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ AT+ L ++KDS GICF+G+ F +F++ ++ G + + G+ LGKH G +
Sbjct: 180 REIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGDMRTLD-GEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
YTIGQR GL + G PW+VV KD+KNNV+FV + ++ + + + E
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDISFTTN--SE 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ +C + + + + EDG A V ++ + + GQ FY G C+G
Sbjct: 297 KPKTFECTAKFRYRQTDTKVTVNMREDG---TAEVVFADPVRAITPGQAVVFYDGDICLG 353
Query: 377 SGVILESW 384
G I W
Sbjct: 354 GGTIDTVW 361
>gi|123442025|ref|YP_001006008.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|420258878|ref|ZP_14761602.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|205828986|sp|A1JLK6.1|MNMA_YERE8 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|122088986|emb|CAL11797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia enterocolitica subsp. enterocolitica 8081]
gi|404513664|gb|EKA27475.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 373
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 207/379 (54%), Gaps = 35/379 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL LS QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVNGKSRLLR-GLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQHVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCN---LMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P R K R+ C L E VE V+ + + GQ
Sbjct: 295 WVDREPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVE--------VRFDDPVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVILESW 384
A FYQG C+G G+I E +
Sbjct: 347 AVFYQGEVCLGGGIIEERY 365
>gi|83645146|ref|YP_433581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Hahella chejuensis KCTC 2396]
gi|123533626|sp|Q2SJL8.1|MNMA_HAHCH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|83633189|gb|ABC29156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Hahella chejuensis KCTC 2396]
Length = 364
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 138/378 (36%), Positives = 207/378 (54%), Gaps = 29/378 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M + +V V +SGGVDSSV+ LL + G+ ++K W ++D + C D++
Sbjct: 1 MSTHRNQRVIVGISGGVDSSVSAYLLKALGYEVEGLFMKNWDEDDGTEY---CTALSDLE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
A+ VCD++ + L + EYW V + ++EYR GRTPNPD+LCN IKF AF+D
Sbjct: 58 DAQKVCDKLGIKLHTASFSAEYWDRVFEHFLDEYRAGRTPNPDILCNKEIKFKAFLDYAQ 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ D +A+GHYA+ + + L D K+Q+YFL + L R +FP+G
Sbjct: 118 ALGGDLIATGHYAQFSRFG-----EHTYLMKGADPSKEQSYFLHAVPGQALARTLFPVGG 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K+EVR+ A + DL D+KDS GICF+G+ KFS+F+ ++ G I+ + G+ +G+
Sbjct: 173 LLKKEVRRIARELDLITHDKKDSTGICFIGERKFSDFLKTYLPAQPGKIV-TDKGEEIGR 231
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG- 305
H G ++TIGQRQGL + G PWYVVEKD+ NN + V++ RLF G
Sbjct: 232 HQGLMYHTIGQRQGLGIGGLKGYDDAPWYVVEKDLDNNELVVAQG----GDHPRLFSAGL 287
Query: 306 ---SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
L W++G+P + K R+ C + V+DGG V + + +
Sbjct: 288 TASKLDWINGVPAKSSFSCYAKTRYRQPDQLCRV---DVQDGG---VRVTFDKRQRAVTP 341
Query: 363 GQFAAFYQGTRCIGSGVI 380
GQ FY G RC+G GVI
Sbjct: 342 GQSVVFYDGARCLGGGVI 359
>gi|397667007|ref|YP_006508544.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Legionella pneumophila subsp. pneumophila]
gi|395130418|emb|CCD08658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Legionella pneumophila subsp. pneumophila]
Length = 361
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 202/368 (54%), Gaps = 22/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL G+ ++K W Q+D ++ CP +D+ A+AVC+
Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHNDY---CPAAKDLADAQAVCN 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +PL V+ + EYW V +Y + EY GRTPNPDVLCN IKF AF++ ++ DY+
Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALTLGADYI 120
Query: 140 ASGHYAK-VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYAK + S +K +KD+ KDQTYFL + L + IFP+G +K ++
Sbjct: 121 ATGHYAKNTIEGSIGYLFK------AKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQI 174
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+FA Q L +KDS GICF+G+ +F F+ I G I ++ G LG+H G F
Sbjct: 175 REFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFILAKPGEI-KSTGGKTLGQHDGLMF 233
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + G PWYVV+KD+ +N ++V++ + G + WL+
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
K R+ C MI ++ N+ V S + + GQF FY+
Sbjct: 294 YKNHLPLTCFAKTRYRQTDQAC--MISPPDN---NLHYVMFSSPQRAITPGQFIVFYEKN 348
Query: 373 RCIGSGVI 380
+C+G I
Sbjct: 349 QCLGGATI 356
>gi|392551629|ref|ZP_10298766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoalteromonas spongiae UST010723-006]
Length = 366
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 137/379 (36%), Positives = 210/379 (55%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 1 MSDNSNIKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDTDEY---CAAAEDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVC+++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCEKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ DY+A+GHY + A+++ K +++ D KDQ+YFL L + + +FP+G
Sbjct: 118 EALGADYIATGHYVR----RAEKDGKATLVR-GLDDNKDQSYFLYTLGHEHVAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVR+ A + L D+KDS GICF+G+ KF +F+ + + G I + E D +G
Sbjct: 173 EIEKPEVRRIAEEQGLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGKIEDCEGND-VG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD+ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDIARNVLVVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ R K R+ C L++ G + +A V E + +
Sbjct: 288 LMANQLHWVDRVGPQSTLRCTVKTRYRQTDIPCTLLV-----GEDGVARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYLDETCLGGGII 361
>gi|417586065|ref|ZP_12236838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_C165-02]
gi|345339221|gb|EGW71647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_C165-02]
Length = 368
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 209/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAEDLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|148358920|ref|YP_001250127.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
[Legionella pneumophila str. Corby]
gi|296106968|ref|YP_003618668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Legionella pneumophila 2300/99 Alcoy]
gi|205816878|sp|A5IBN1.1|MNMA_LEGPC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|148280693|gb|ABQ54781.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
[Legionella pneumophila str. Corby]
gi|295648869|gb|ADG24716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Legionella pneumophila 2300/99 Alcoy]
Length = 361
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 205/370 (55%), Gaps = 26/370 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL G+ ++K W Q+D ++ CP +D+ A+AVC+
Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHNDY---CPAAKDLADAQAVCN 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +PL V+ + EYW V +Y + EY GRTPNPDVLCN IKF AF++ ++ DY+
Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGADYI 120
Query: 140 ASGHYAK-VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYAK + S +K +KD+ KDQTYFL + L + IFP+G +K ++
Sbjct: 121 ATGHYAKNTIEGSIGYLFK------AKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQI 174
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+FA Q L +KDS GICF+G+ +F F+ I G I ++ G LG+H G F
Sbjct: 175 REFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFILAKPGEI-KSTGGKTLGQHDGLMF 233
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + G PWYVV+KD+ +N ++V++ + G + WL+
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293
Query: 313 LPPEEISRLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
E L C K R+ C MI ++ N+ V S + + GQF FY+
Sbjct: 294 Y--ENHLPLTCFAKTRYRQTDQAC--MISPPDN---NLHYVMFSSPQRAITPGQFIVFYE 346
Query: 371 GTRCIGSGVI 380
+C+G I
Sbjct: 347 KNQCLGGATI 356
>gi|304413559|ref|ZP_07395032.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Candidatus Regiella insecticola LSR1]
gi|304284402|gb|EFL92795.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Candidatus Regiella insecticola LSR1]
Length = 367
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 205/369 (55%), Gaps = 23/369 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDSSVA LL G+ ++K W ++D + + C +D+ A+AVCD
Sbjct: 8 KIIVGMSGGVDSSVAAYLLKQQGYQVAGLFMKNWEEDDNDTY---CGAAKDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++++ L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF+ A +E DY
Sbjct: 65 KLNINLHRVNFAAEYWDNVFKLFLAEYQAGRTPNPDILCNKEIKFNAFLSFACEELEADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + H+SA + + L D KDQ+YFL L+Q QL R +FP+G + K EV
Sbjct: 125 IATGHYVRR-HTSAGK----NCLLRGLDDNKDQSYFLYTLNQQQLARSLFPIGDLKKSEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q +L +KDS GICF+G+ KF +F+AR++ G I+ + D LG+H G +
Sbjct: 180 RNIAEQLNLITAKKKDSTGICFIGERKFRDFLARYLPAQPGSIISVDGQD-LGQHHGLMY 238
Query: 259 YTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVV+K++ N + V++++ L W+
Sbjct: 239 HTLGQRKGLGIGGIKEGNGAPWYVVDKNIATNTLLVAQDHKHAKLMSHGLIAQQLSWID- 297
Query: 313 LPPEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
LP R K R+ C + + EN V+ + + GQ A FYQG
Sbjct: 298 LPSLTFPLRCMVKTRYRQQDIPCTVFSK-----AENSIEVRFEQPIVAVTPGQSAVFYQG 352
Query: 372 TRCIGSGVI 380
C+G G+I
Sbjct: 353 DICLGGGII 361
>gi|50121369|ref|YP_050536.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium atrosepticum
SCRI1043]
gi|71658013|sp|Q6D4E9.1|MNMA_ERWCT RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|49611895|emb|CAG75344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pectobacterium atrosepticum SCRI1043]
Length = 368
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 206/374 (55%), Gaps = 28/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RHDVDGKSRLLR-GMDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + +L +KDS GICF+G+ KF++F+AR++ G IL + +G+H G +
Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLPAQPGPILSVDDNKPMGQHQGLMY 239
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN+++V++ + + RL G L
Sbjct: 240 HTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGH----EHPRLMSYGLIAQQLH 295
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ +C V G++ V+ E + GQ A F
Sbjct: 296 WVDRQPLTAELRCTVKTRYRQADISCT-----VTPLGDDRITVRFDEPFAAVTPGQSAVF 350
Query: 369 YQGTRCIGSGVILE 382
Y C+G G+I E
Sbjct: 351 YLDDVCLGGGIIEE 364
>gi|423195894|ref|ZP_17182477.1| tRNA-specific 2-thiouridylase mnmA [Aeromonas hydrophila SSU]
gi|404632695|gb|EKB29297.1| tRNA-specific 2-thiouridylase mnmA [Aeromonas hydrophila SSU]
Length = 368
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 211/379 (55%), Gaps = 30/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+
Sbjct: 1 MTDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEY---CSAAQDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAVCD++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAKAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ Y+A+GHY + S+ +P +L D KDQ+YFL LS+ Q+ + +FP+G
Sbjct: 118 EELGATYIATGHYVRRDDSTG----RPRLLR-GLDTNKDQSYFLYTLSETQVGQSLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A Q DL +KDS GICF+G+ KF +F+A+ + G I E G +G
Sbjct: 173 DLEKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLPAQPGPI-ETVDGKVIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G WYVV+K+V+ N + V++ + RL+ G
Sbjct: 232 EHQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLIVAQGEHP-----RLYSDG 286
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P E R K R+ C +I+ ++D E I V+ E +
Sbjct: 287 LIASQLHWVDRTPIREPRRCTVKTRYRQEDIPC--LIQPIDD--ETIRVI-FDESQAAVT 341
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 342 PGQSAVFYDGEVCLGGGII 360
>gi|411010098|ref|ZP_11386427.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas aquariorum AAK1]
Length = 368
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 211/379 (55%), Gaps = 30/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+
Sbjct: 1 MTDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEY---CSAAQDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAVCD++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAKAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ Y+A+GHY + S+ +P +L D KDQ+YFL LS+ Q+ + +FP+G
Sbjct: 118 EELGATYIATGHYVRRDDSTG----RPRLLR-GLDTNKDQSYFLYTLSETQVGQSLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A Q DL +KDS GICF+G+ KF +F+A+ + G I E G +G
Sbjct: 173 DLEKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLPAQPGPI-ETVDGKVIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G WYVV+K+V+ N + V++ + RL+ G
Sbjct: 232 EHQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLIVAQGEHP-----RLYSDG 286
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P E R K R+ C +I+ ++D E I V+ E +
Sbjct: 287 LIASQLHWVDRTPIREPRRCTVKTRYRQEDIPC--LIQPIDD--ETIRVI-FDEKQAAVT 341
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 342 PGQSAVFYDGEVCLGGGII 360
>gi|156974113|ref|YP_001445020.1| tRNA-specific 2-thiouridylase MnmA [Vibrio harveyi ATCC BAA-1116]
gi|166235090|sp|A7MSW1.1|MNMA_VIBHB RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|156525707|gb|ABU70793.1| hypothetical protein VIBHAR_01824 [Vibrio harveyi ATCC BAA-1116]
Length = 374
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 207/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++D+ L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLDIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENDEKPQMLR-GLDSNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ R++ G I E G+ +G+H G +
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQGLMY 240
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD++ NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 301 DREPIRDVMKCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYK 355
Query: 371 GTRCIGSGVI 380
C+G +I
Sbjct: 356 DDVCLGGSII 365
>gi|84391736|ref|ZP_00991638.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio splendidus 12B01]
gi|84376449|gb|EAP93328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio splendidus 12B01]
Length = 378
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 205/373 (54%), Gaps = 22/373 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAK---VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A GHY + D KP +L D KDQ+YFL LS Q+ R +FP+G + K
Sbjct: 129 IAMGHYVRRTFPTQEELDAGVKPEMLR-GLDGNKDQSYFLYTLSSDQVARSLFPVGELEK 187
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + DL +KDS GICF+G+ KF+EF+ +++ G I E G +G+H G
Sbjct: 188 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGNI-ETPEGQVIGQHQG 246
Query: 256 FWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
++T+GQR+GL + G PW+V EKD+K NV+ + K L
Sbjct: 247 LMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSEGLIASQL 306
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ P E+ K R+ C ++ ++D +NI V+ E + GQ A
Sbjct: 307 HWVNRTPITEVMTCTVKTRYRQTDIPCTII--PIDD--DNIKVI-FDEPQIAVTPGQSAV 361
Query: 368 FYQGTRCIGSGVI 380
FYQ C+G G+I
Sbjct: 362 FYQDEVCLGGGII 374
>gi|429095733|ref|ZP_19157839.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter dublinensis 582]
gi|426282073|emb|CCJ83952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter dublinensis 582]
Length = 369
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVDDKSRLLR-GLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD LG+H G +
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDTLGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+S P K R+ C + ++D + V+ E + GQ A F
Sbjct: 295 WVSREPVTAPFSCTVKTRYRQTDIPCT--VRPLDD---DRIEVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YLGDVCLGGGII 361
>gi|262039106|ref|ZP_06012439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Leptotrichia goodfellowii F0264]
gi|261746895|gb|EEY34401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Leptotrichia goodfellowii F0264]
Length = 365
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 213/368 (57%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV + +SGGVDSSVA LL G+ ++K W ++D C EED K AV +
Sbjct: 5 KVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDDNGV---CMSEEDYKDVVAVAE 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+++P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D + D+V
Sbjct: 62 QLEIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDYAMKIGADHV 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+++H D + K SV+ D KDQTYFL L+Q QL++++FP+G +K ++R
Sbjct: 122 ATGHYARIIHEEKDGKIK-SVMLRGIDDNKDQTYFLCQLNQKQLEKVLFPIGEYTKPQIR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A +++L +KDS GICF+G+ F+EF+++++ G I++ + G+ LGKH G +Y
Sbjct: 181 EIAEKYNLKTAKKKDSTGICFIGERDFNEFLSKYLPAKTGNIVDTK-GNTLGKHNGLMYY 239
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQR+G+ + G PW+VV+K++ N + V++ S + L + +
Sbjct: 240 TIGQRKGIGIGNTKEGTGEPWFVVDKNLDTNELIVTQGDNSVLYSKGLIATD----FNFI 295
Query: 314 PPEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+E+ L+C V+ + +I + D N + E + + GQ A Y+G
Sbjct: 296 NKDELQFPLECTVKFRYRQKDAGAVINKLND---NEYEIIFDEPQKAITLGQIAVVYKGE 352
Query: 373 RCIGSGVI 380
C+G GVI
Sbjct: 353 ECLGGGVI 360
>gi|453061890|gb|EMF02886.1| tRNA-specific 2-thiouridylase MnmA [Serratia marcescens VGH107]
Length = 366
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEEY---CAAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + D+
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDGKSRLLR-GVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIVSVD-GQTVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NNV+ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGLKDSSEDPWYVVDKDVANNVLVVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ LP R K R+ C + ++D E I V+ E + GQ A F
Sbjct: 295 WVDRLPLSGPFRCTVKTRYRQQDIPCT--VTPLDD--ERIE-VRFDEPVSAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQG C+G G+I
Sbjct: 350 YQGEICLGGGII 361
>gi|238920209|ref|YP_002933724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
putative [Edwardsiella ictaluri 93-146]
gi|259495829|sp|C5B8B9.1|MNMA_EDWI9 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|238869778|gb|ACR69489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
putative [Edwardsiella ictaluri 93-146]
Length = 367
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDSDEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV ++EYR GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 RLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + + + V D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVRRRDINGTTQLLRGV-----DANKDQSYFLYTLSHQQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KF EF+ R++ G I+ + G+ +G+H G +
Sbjct: 180 RRIAAQLDLATAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GETIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KD+ NNV+ V++ + RLF G L
Sbjct: 239 HTLGQRKGLGIGGTKEGSEEPWYVVDKDLDNNVLVVAQGH----DHPRLFSNGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ LP R K R+ C ++ + D E I V+ + + GQ A F
Sbjct: 295 WVDRLPLGAPLRCTVKTRYRQADIPC--LVTPLAD--ERIE-VRFDQPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQ C+G G+I
Sbjct: 350 YQDEVCLGGGII 361
>gi|91226036|ref|ZP_01260963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio alginolyticus 12G01]
gi|91189477|gb|EAS75754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio alginolyticus 12G01]
Length = 374
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 207/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGEKPQMLR-GLDGNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ R++ G I E G+ +G+H G +
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQGLMY 240
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD++ NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 301 DREPIRDVMKCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYK 355
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 356 GDVCLGGGII 365
>gi|449147185|ref|ZP_21777925.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Vibrio mimicus CAIM 602]
gi|449077293|gb|EMB48287.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Vibrio mimicus CAIM 602]
Length = 371
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 200/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVRRTFPQNGE--KPQMLR-GLDNNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 245 HTLGQRKGLHIGGMKESNEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 304
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 305 TLITEPLRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEQQVAVTPGQSAVFYQGE 359
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 360 ICLGGGIIEE 369
>gi|386314004|ref|YP_006010169.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Shewanella putrefaciens 200]
gi|319426629|gb|ADV54703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella putrefaciens 200]
Length = 372
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K +VR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHQVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 298 LHWVDRTGPVDGCHITVKTRYRQQDVPCTLTYTD-----EHTLRVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>gi|417951825|ref|ZP_12594910.1| tRNA-specific 2-thiouridylase MnmA [Vibrio splendidus ATCC 33789]
gi|342803777|gb|EGU39126.1| tRNA-specific 2-thiouridylase MnmA [Vibrio splendidus ATCC 33789]
Length = 378
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/373 (38%), Positives = 204/373 (54%), Gaps = 22/373 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAK---VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A GHY + D KP +L D KDQ+YFL LS Q+ R +FP+G + K
Sbjct: 129 IAMGHYVRRTFPTQEELDAGVKPEMLR-GLDSNKDQSYFLYTLSSDQVARSLFPVGELEK 187
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + DL +KDS GICF+G+ KF+EF+ +++ G I E G +GKH G
Sbjct: 188 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGDI-ETPEGKVIGKHNG 246
Query: 256 FWFYTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
++T+GQR+GL + G PW+V EKD+K NV+ + K L
Sbjct: 247 LMYHTLGQRKGLHIGGTKGGGGNEEPWFVGEKDLKRNVLIAVQGKDHPLLKSEGLIASQL 306
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ P E+ K R+ C ++ ++D ENI V+ E + GQ A
Sbjct: 307 HWVNRTPITEVMTCTVKTRYRQTDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAV 361
Query: 368 FYQGTRCIGSGVI 380
FYQ C+G G+I
Sbjct: 362 FYQDDVCLGGGII 374
>gi|424865880|ref|ZP_18289736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [SAR86
cluster bacterium SAR86B]
gi|400758453|gb|EJP72660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [SAR86
cluster bacterium SAR86B]
Length = 358
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 206/378 (54%), Gaps = 29/378 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M KG V V +SGGVDSSV+ LL G ++K W E E EC E D K
Sbjct: 1 MNKHKG-SVVVGMSGGVDSSVSAYLLKKQGFDVKGLFMKNWQTEPGE----ECTSEIDYK 55
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
A VCDQ+D+PL + ++EYW NV + E++ GRTPNPD+LCN IKF +F+
Sbjct: 56 DASKVCDQLDIPLHKANFSNEYWDNVFESFLSEHKKGRTPNPDILCNREIKFKSFLHYAE 115
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ D++A+GHYAK+++ D Y L + D KDQTYFL +++ QLK IFPL
Sbjct: 116 DIGADFIATGHYAKLINED-DHTY----LARAVDDFKDQTYFLHEVNENQLKNCIFPLAD 170
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVRK A +LP +KDS GICF+G+ +F+ R I G I + G +G+
Sbjct: 171 LTKNEVRKIAADTNLPVAKKKDSVGICFIGERNLKDFLGRFISLKPGDI-KDNNGKVIGR 229
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G YTIGQRQGL + G PWYV +KD NN +FV + + +
Sbjct: 230 HNGSALYTIGQRQGLYIGGIKDMQELPWYVYKKDTLNNEIFVCQGVDNPLLFSNSLTIKK 289
Query: 307 LKWLSGLP---PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
+KW++ + P IS LQ + +H P I+ + +++ +V SE + + G
Sbjct: 290 IKWINDINYNLPLNIS-LQIRHQHKP--------IKALLKKRDDMYIVDFSEPIRAITPG 340
Query: 364 QFAAFYQGTRCIGSGVIL 381
Q A FY+ C+G GVI+
Sbjct: 341 QSAVFYKDNICLGGGVII 358
>gi|256383871|gb|ACU78441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma mycoides subsp. capri str. GM12]
gi|256384702|gb|ACU79271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma mycoides subsp. capri str. GM12]
gi|296455514|gb|ADH21749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[synthetic Mycoplasma mycoides JCVI-syn1.0]
Length = 375
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 212/374 (56%), Gaps = 20/374 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------CPWEEDMK 72
KV V LSGGVDSSVA LL G+ +++ W + CP E+D
Sbjct: 4 KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNININNDICPQEQDYL 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAV D++++ L V EYW V Y IEEY+ RTPNPD+LCN IKF F++ AI
Sbjct: 64 DAKAVADKLNIKLHRVDFIKEYWDYVFLYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ + DY+A GHYAKV + ++Y+ L + D KDQTYFLS L+Q QL + +FPL
Sbjct: 124 NQLNADYIAMGHYAKVEFNKTTKQYE---LFKASDTNKDQTYFLSQLNQNQLSKTLFPLA 180
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++KE+VRK A + +L ++KDS GICF+G+ F++F+ +I G I++ +T LG
Sbjct: 181 NLTKEQVRKIALEQNLITANKKDSTGICFIGERHFTDFLQNYIPSQTGNIVDIKTNKVLG 240
Query: 252 KHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFV-SRNYYSFDKKRRLFRVGSLK 308
+H G +YTIGQR+G+ L G P+YV +KDV+ +++V S + S+ F V +
Sbjct: 241 QHIGIMYYTIGQRKGIHLSGMSEPYYVADKDVEKKILYVCSTSDQSYLYSTSCF-VNDIN 299
Query: 309 WLSGLPP--EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
W+ L ++++ +C+ + + N++++ ++D + + + + GQ A
Sbjct: 300 WILDLSKYVSDVNQFKCQAKFRYRQNDNNVVVKKIDDNNYQVI---FEKPLKAITIGQQA 356
Query: 367 AFYQGTRCIGSGVI 380
FY C+G VI
Sbjct: 357 VFYLDDICLGGAVI 370
>gi|227111563|ref|ZP_03825219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pectobacterium carotovorum subsp. brasiliensis PBR1692]
gi|227327064|ref|ZP_03831088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pectobacterium carotovorum subsp. carotovorum WPP14]
Length = 368
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 205/374 (54%), Gaps = 28/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RHDVDGKSRLLR-GMDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + +L +KDS GICF+G+ KF++F+AR++ G IL + +G+H G +
Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLPAQPGPILSVDDNKPMGQHQGLMY 239
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN+++V++ + + RL G L
Sbjct: 240 HTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGH----EHPRLMSYGLIAQQLH 295
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C V G++ V+ E + GQ A F
Sbjct: 296 WVDRQPLTAELRCTVKTRYRQADIPCT-----VTPLGDDRITVRFDEPVAAVTPGQSAVF 350
Query: 369 YQGTRCIGSGVILE 382
Y C+G G+I E
Sbjct: 351 YLDDVCLGGGIIEE 364
>gi|333984719|ref|YP_004513929.1| tRNA-specific 2-thiouridylase mnmA [Methylomonas methanica MC09]
gi|333808760|gb|AEG01430.1| tRNA-specific 2-thiouridylase mnmA [Methylomonas methanica MC09]
Length = 364
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 201/367 (54%), Gaps = 20/367 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+ V +SGGVDSSV L GH T ++K W ++D + C +D+ A+ VCD
Sbjct: 5 IIVGMSGGVDSSVTALALQEQGHKVTGLFMKNWEEDDGTEY---CTAMQDLADAQQVCDT 61
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYV 139
+ + L+ V+ EYW V + E++ GRTPNPD+LCN +KF AF++ AI + +Y+
Sbjct: 62 LGIELKTVNFAAEYWDEVFEVFLSEFKAGRTPNPDILCNKHVKFSAFLNYAIEDLGAEYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V D E++ L D K+Q+YFL + Q L + +FP+G + K E+R
Sbjct: 122 ATGHYARVCEQ--DGEFQ---LLKGLDPNKEQSYFLYAMGQKALSKTLFPIGHLHKPEIR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + N +KDS GICF+G+ KF EF+ R++ G + E G +G+H G +Y
Sbjct: 177 AMADRAGFANSRKKDSTGICFIGERKFKEFLQRYLPHQPGEMRTPE-GQTIGQHHGLMYY 235
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + P PW+V+EKD++NN++ V + + G L W
Sbjct: 236 TLGQRQGLGIGGVKNAPDEPWFVLEKDLENNILLVGQGHDHPLMLHNTLEAGQLDWCGSQ 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P E R K R+ +C ++E + DGG + V+ E + + GQ FY+G
Sbjct: 296 PLNETLRCAAKTRYRQADQDC--LVEPI-DGGTRVK-VRFDEPQRAITPGQSVVFYRGEV 351
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 352 CLGGGII 358
>gi|448241820|ref|YP_007405873.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Serratia marcescens WW4]
gi|445212184|gb|AGE17854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Serratia marcescens WW4]
Length = 366
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + D+
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDGKSRLLR-GVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIVSVD-GQTVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NNV+ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGLKDSSEDPWYVVDKDVANNVLVVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ LP R K R+ C + ++D E I V+ E + GQ A F
Sbjct: 295 WVDRLPLSGPFRCTVKTRYRQQDIPCT--VTPLDD--ERIE-VRFDEPVSAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQG C+G G+I
Sbjct: 350 YQGEICLGGGII 361
>gi|320156716|ref|YP_004189095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio vulnificus MO6-24/O]
gi|319932028|gb|ADV86892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio vulnificus MO6-24/O]
Length = 374
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 208/370 (56%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNSEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGEKPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E+ G+ LG+H G +
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGNI-ESPEGEVLGQHQGLMY 240
Query: 259 YTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD+K NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + + GQ A FYQ
Sbjct: 301 EREPIRDVMKCTVKTRYRQQDIPCTII--PIDD--ENIKVI-FDEPEIAVTPGQSAVFYQ 355
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 356 GDVCLGGGII 365
>gi|238758422|ref|ZP_04619599.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236]
gi|238703326|gb|EEP95866.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236]
Length = 373
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/376 (38%), Positives = 209/376 (55%), Gaps = 29/376 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDGKSRLLR-GLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQHVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KD+ NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGGDDPWYVVDKDLANNILLVAQGH----EHPRLMSVGLAAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + ++D E + V+ + GQ A F
Sbjct: 295 WVDRQPVTAPFRCVVKTRYRQQDIPCT--VTPLDD--ERVD-VRFDSPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVILESW 384
YQG C+G G+I E +
Sbjct: 350 YQGEVCLGGGIIEERY 365
>gi|269967776|ref|ZP_06181823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio alginolyticus 40B]
gi|269827596|gb|EEZ81883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio alginolyticus 40B]
Length = 430
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 207/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 64 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 120
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 121 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 180
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 181 IAMGHYVR--RSFPENGEKPQMLR-GLDGNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 237
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ R++ G I E G+ +G+H G +
Sbjct: 238 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQGLMY 296
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD++ NV+ + K L W+
Sbjct: 297 HTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHWV 356
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 357 DREPIRDVMKCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYK 411
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 412 GDVCLGGGII 421
>gi|197284773|ref|YP_002150645.1| tRNA-specific 2-thiouridylase MnmA [Proteus mirabilis HI4320]
gi|227357779|ref|ZP_03842128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Proteus mirabilis ATCC 29906]
gi|425067751|ref|ZP_18470867.1| tRNA-specific 2-thiouridylase mnmA [Proteus mirabilis WGLW6]
gi|229486421|sp|B4EVG2.1|MNMA_PROMH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|194682260|emb|CAR41993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Proteus mirabilis HI4320]
gi|227162108|gb|EEI47122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Proteus mirabilis ATCC 29906]
gi|404600951|gb|EKB01376.1| tRNA-specific 2-thiouridylase mnmA [Proteus mirabilis WGLW6]
Length = 367
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNWEEDDDTEY---CSASADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RRDIDGKSQLLR-GVDNNKDQSYFLYTLSHQQIAQSLFPVGEMEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF++F++R++ G I+ + G+ +G+H G +
Sbjct: 180 RKIAEKLDLATAKKKDSTGICFIGERKFTDFLSRYLPAKPGPIVTVD-GETIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVANNILIVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ P E R K R+ C V E+ V+ + GQ A F
Sbjct: 295 WVAREPITEAFRCTVKTRYRQADIPCT-----VTPLDEDKIEVRFDYPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQ C+G G+I
Sbjct: 350 YQDEVCLGGGII 361
>gi|348618717|ref|ZP_08885231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Glomeribacter gigasporarum BEG34]
gi|347816001|emb|CCD30038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Glomeribacter gigasporarum BEG34]
Length = 355
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/367 (37%), Positives = 196/367 (53%), Gaps = 22/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++ V +SGGVDSSV+ LL GH ++K W +E C +D A +V D
Sbjct: 4 RIIVGMSGGVDSSVSAWLLKQQGHEVMGLFMKNWEEE------AHCAARQDWIDAASVAD 57
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +EV + EY V + + E+ GRTPNPDVLCN RIKF AF++ ++ +
Sbjct: 58 LLGMDIEVANFAAEYKAQVFAEFLREHAAGRTPNPDVLCNARIKFKAFVEHALALGAQMI 117
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ H A + L + D KDQ+YFL L+QAQL R+ FPLG + K +VR
Sbjct: 118 ATGHYARI-HRPAQGGIE---LRRACDSTKDQSYFLHRLNQAQLARVCFPLGAMQKAQVR 173
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + LPN +KDS GICF+G+ F +F++R++ G I + G +G+H G FY
Sbjct: 174 AIAARIGLPNAAKKDSTGICFIGERPFRDFLSRYLPRAPGPI-KTPDGQTVGEHIGMAFY 232
Query: 260 TIGQRQGLRLP------GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+G+ L G PWYV KD N ++V + + R + + +W+SG
Sbjct: 233 TLGQRKGIGLGGIRNGNGAPWYVARKDSAQNTLYVVQGHTHPWLNRDSIDLENARWISGA 292
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + R K R+ C L+ H EN + + GQ+A Y G R
Sbjct: 293 PPPDGFRCSAKTRYRQTDAPCTLIRTH-----ENRFTLHFDQPQWAATPGQYAVLYHGER 347
Query: 374 CIGSGVI 380
CIG GVI
Sbjct: 348 CIGGGVI 354
>gi|425072899|ref|ZP_18476005.1| tRNA-specific 2-thiouridylase mnmA [Proteus mirabilis WGLW4]
gi|404596673|gb|EKA97193.1| tRNA-specific 2-thiouridylase mnmA [Proteus mirabilis WGLW4]
Length = 367
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/372 (37%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNWEEDDDTEY---CSASADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RRDIDGKSQLLR-GVDNNKDQSYFLYTLSHQQIAQSLFPVGEMEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF++F++R++ G I+ + G+ +G+H G +
Sbjct: 180 RKIAEKLDLATAKKKDSTGICFIGERKFTDFLSRYLPAKPGPIVTVD-GETIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + RL +G L
Sbjct: 239 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVANNILIVAQGH----EHPRLMSIGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ P E R K R+ C V E+ V+ + GQ A F
Sbjct: 295 WVAREPITEAFRCTVKTRYRQADIPCT-----VTPLDEDKIEVRFDYPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQ C+G G+I
Sbjct: 350 YQNEVCLGGGII 361
>gi|27366203|ref|NP_761731.1| tRNA-specific 2-thiouridylase MnmA [Vibrio vulnificus CMCP6]
gi|30173408|sp|Q8CWJ6.1|MNMA_VIBVU RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|27362403|gb|AAO11258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio vulnificus CMCP6]
Length = 374
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 208/370 (56%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDDSEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGEKPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E+ G+ LG+H G +
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGNI-ESPEGEVLGQHQGLMY 240
Query: 259 YTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD+K NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + + GQ A FYQ
Sbjct: 301 EREPIRDVVKCTVKTRYRQQDIPCTII--PIDD--ENIKVI-FDEPEIAVTPGQSAVFYQ 355
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 356 GDVCLGGGII 365
>gi|423205807|ref|ZP_17192363.1| tRNA-specific 2-thiouridylase mnmA [Aeromonas veronii AMC34]
gi|404623198|gb|EKB20050.1| tRNA-specific 2-thiouridylase mnmA [Aeromonas veronii AMC34]
Length = 368
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 211/379 (55%), Gaps = 30/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+
Sbjct: 1 MTDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEY---CSAAQDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAVCD++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAKAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ Y+A+GHY + S+ +P +L D KDQ+YFL LS+ Q+ + +FP+G
Sbjct: 118 EELGATYIATGHYVRRDDSTG----RPRLLR-GLDTNKDQSYFLYTLSEKQVGQSLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A Q DL +KDS GICF+G+ KF +F+A+ + G I E G +G
Sbjct: 173 DLEKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLPAQPGKI-ETVDGKVIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G WYVV+K+V+ N + V++ + RL+ G
Sbjct: 232 EHQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNALVVAQGEHP-----RLYSDG 286
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P E R K R+ C +I+ ++D E I V+ E +
Sbjct: 287 LIASQLHWVDRTPIREPRRCTVKTRYRQQDIPC--LIQPIDD--ETIRVI-FDEKQAAVT 341
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 342 PGQSAVFYDGEVCLGGGII 360
>gi|146293329|ref|YP_001183753.1| tRNA-specific 2-thiouridylase MnmA [Shewanella putrefaciens CN-32]
gi|166235082|sp|A4Y7M1.1|MNMA_SHEPC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|145565019|gb|ABP75954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella putrefaciens CN-32]
Length = 372
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K +VR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHQVREIAKEMGLITHDKKDSTGICFIGERKFTEFLRTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 298 LHWVDRTGPVDGCHITVKTRYRQQDVPCTLTYTD-----EHTLRVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>gi|88812884|ref|ZP_01128128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrococcus mobilis Nb-231]
gi|88789806|gb|EAR20929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrococcus mobilis Nb-231]
Length = 374
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/372 (38%), Positives = 197/372 (52%), Gaps = 28/372 (7%)
Query: 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82
V LSGGVDS+VA LL GH+ +++ W +D + C E+D+ YAK VC Q+D
Sbjct: 9 VGLSGGVDSAVAALLLLEQGHAIQGLFMRNWEDDDTATY---CSAEQDLAYAKQVCAQLD 65
Query: 83 VPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASG 142
+PL V + EY V + + EYR G TPNPD+LCN RIKF AF++ + D++A+G
Sbjct: 66 IPLHVANFAHEYRAEVFDHCLREYRRGHTPNPDILCNQRIKFHAFINYAQRLGTDHIATG 125
Query: 143 HYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFA 202
HYA+ + + + L +KD KDQ+YFL L Q QL R FPLG +K VR A
Sbjct: 126 HYARNI-----ERHGTYHLFKAKDADKDQSYFLYTLGQRQLARATFPLGEHAKSTVRALA 180
Query: 203 TQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIG 262
Q N DRKDS GICF+G+ F F++R+I G I E G +G+H G FYT+G
Sbjct: 181 EQAGFDNFDRKDSTGICFIGERAFRPFLSRYIQPTPGPI-ETPEGVVVGRHQGVSFYTLG 239
Query: 263 QRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLSG 312
QRQGL + G PWYVV KD N + V++ + L VG L W++G
Sbjct: 240 QRQGLEIGGRAGRSGKPWYVVGKDTPANRLIVAQGH----DHPLLMSVGLEATELCWVAG 295
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
PP R K R+ +C VE + A + + + GQ FY
Sbjct: 296 RPPSTPLRCFAKTRYRQPSQSCV-----VEAITADCARTVFDQPQRAVVPGQSVVFYCDE 350
Query: 373 RCIGSGVILESW 384
CIG GVI +++
Sbjct: 351 ECIGGGVIQQTF 362
>gi|403058369|ref|YP_006646586.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Pectobacterium carotovorum subsp. carotovorum PCC21]
gi|402805695|gb|AFR03333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pectobacterium carotovorum subsp. carotovorum PCC21]
Length = 368
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 205/374 (54%), Gaps = 28/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RHDVDGKSRLLR-GMDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + +L +KDS GICF+G+ KF++F+AR++ G IL + +G+H G +
Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLPAQPGPILSVDDNKPMGQHQGLMY 239
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN+++V++ + + RL G L
Sbjct: 240 HTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGH----EHPRLMSYGLIAQQLH 295
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C V G++ V+ E + GQ A F
Sbjct: 296 WVDREPLTAELRCTVKTRYRQADIPCT-----VTPLGDDRITVRFDEPVAAVTPGQSAVF 350
Query: 369 YQGTRCIGSGVILE 382
Y C+G G+I E
Sbjct: 351 YLDDVCLGGGIIEE 364
>gi|256822321|ref|YP_003146284.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Kangiella koreensis DSM 16069]
gi|256795860|gb|ACV26516.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Kangiella koreensis DSM 16069]
Length = 367
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 202/368 (54%), Gaps = 20/368 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+ A+AVCD+
Sbjct: 11 VIVGMSGGVDSSVSAYLLKKQGYQVEGLFMKNWEEDDTDEY---CSAAEDLADAQAVCDK 67
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ + L V+ EYW V Y +EEY+ GRTPNPD++CN IKF AF+D + DY+A
Sbjct: 68 LGIKLRTVNFAAEYWDRVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLDYAQLLGADYIA 127
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHY + AD + + L D KDQ+YFL +S ++ + +FP+GCI K EVRK
Sbjct: 128 TGHYVR--RGEADGK---ATLLRGLDLNKDQSYFLYGVSHEKIAKTLFPVGCIEKPEVRK 182
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + L +KDS GICF+G+ KF++F+ +++ G I E G+ +GKH G ++T
Sbjct: 183 IAEEQGLVTAKKKDSTGICFIGERKFTDFLQQYLPAQPGNI-ETPEGEVIGKHNGLMYHT 241
Query: 261 IGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+GQR+GL + G PW+ + KD+K NV+ V + + L W++ P
Sbjct: 242 LGQRKGLGIGGRQDSSEEPWFTLNKDLKRNVLIVGQGHEHPLLMSHGLIADKLDWIATEP 301
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + R K R+ C V+ + +V+ + + + GQ FYQG C
Sbjct: 302 PSDEFRCTAKTRYRQDDVPC-----QVKRLNDTQWLVEFDDKQRAVTPGQSVVFYQGEVC 356
Query: 375 IGSGVILE 382
+G G+I E
Sbjct: 357 LGGGIIKE 364
>gi|334703821|ref|ZP_08519687.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas caviae Ae398]
Length = 368
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 211/379 (55%), Gaps = 30/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+
Sbjct: 1 MTDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEY---CSAAQDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAVCD++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAKAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ Y+A+GHY + S+ +P +L D KDQ+YFL LS+AQ+ + +FP+G
Sbjct: 118 EELGATYIATGHYVRRDDSTG----RPRLLR-GLDTNKDQSYFLYTLSEAQVGQSLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A Q DL +KDS GICF+G+ KF +F+A+ + G I E G +G
Sbjct: 173 DLEKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLPAQPGPI-ETVDGKIIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G WYVV+K+V+ N + V++ + RL+ G
Sbjct: 232 EHQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLVVAQGEHP-----RLYSDG 286
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P R K R+ C +I+ ++D E I V+ E +
Sbjct: 287 LVASQLHWVDRTPIRAPRRCTVKTRYRQEDIPC--LIQPIDD--ETIRVI-FDEKQAAVT 341
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 342 PGQSAVFYDGEVCLGGGII 360
>gi|163751230|ref|ZP_02158458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella benthica KT99]
gi|161328944|gb|EDQ00018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella benthica KT99]
Length = 376
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 200/368 (54%), Gaps = 17/368 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLLKQGYRVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW V Y + EY+ GRTPNPD++CN IKF AF++ A ++ DY
Sbjct: 70 KLGIKLHTVNFAAEYWDKVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFADEILDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + V D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVRRCDETGQSRMLRGV-----DGNKDQSYFLYTLSHEQIARSLFPVGELEKSEV 184
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ KF++F+ + G I AE G+ +GKH G +
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTDFLRTFLPAQPGNIETAE-GEVIGKHQGLMY 243
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVV+K++ NV+ V + F L W+
Sbjct: 244 HTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGTHPRLMSMGFYADQLHWVDR 303
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P +R+ K R+ C L +E+ D GE+ V E + GQ A FY
Sbjct: 304 KGPINEARITVKTRYRQRDVACTLFLEN-NDKGEDTIRVLFDEPVAAVTPGQSAVFYSDE 362
Query: 373 RCIGSGVI 380
C+G G+I
Sbjct: 363 LCLGGGII 370
>gi|354597763|ref|ZP_09015780.1| tRNA-specific 2-thiouridylase mnmA [Brenneria sp. EniD312]
gi|353675698|gb|EHD21731.1| tRNA-specific 2-thiouridylase mnmA [Brenneria sp. EniD312]
Length = 368
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 205/374 (54%), Gaps = 28/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLAEYQAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RRDVDGKSRLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGDLEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KFS+F+AR++ G IL + G +G+H G +
Sbjct: 180 REIAVQLDLATAKKKDSTGICFIGERKFSDFLARYLPAQPGPILSVDDGKPMGQHQGLMY 239
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN+++V++ + + RL G L
Sbjct: 240 HTLGQRKGLGIGGVKDGGEAPWYVVDKDVENNILYVAQGH----EHPRLMSGGLIAQQLH 295
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ R K R+ C V G + V+ + + GQ A F
Sbjct: 296 WVDRQALTTELRCVVKTRYRQADIPCT-----VTPLGADRITVRFDKPVAAVTPGQSAVF 350
Query: 369 YQGTRCIGSGVILE 382
YQ C+G G+I E
Sbjct: 351 YQDEVCLGGGIIEE 364
>gi|253688256|ref|YP_003017446.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|259495833|sp|C6DFW7.1|MNMA_PECCP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|251754834|gb|ACT12910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 368
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 205/374 (54%), Gaps = 28/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RHDVDGKSRLLR-GMDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + +L +KDS GICF+G+ KF++F+AR++ G IL + +G+H G +
Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLPAQPGPILSVDDNKPMGQHQGLMY 239
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN+++V++ + + RL G L
Sbjct: 240 HTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGH----EHPRLMSHGLIAQQLH 295
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C V G++ V+ E + GQ A F
Sbjct: 296 WVDRQPLTAELRCTVKTRYRQADIPCT-----VTPLGDDRITVRFDEPVAAVTPGQSAVF 350
Query: 369 YQGTRCIGSGVILE 382
Y C+G G+I E
Sbjct: 351 YLDDVCLGGGIIEE 364
>gi|395232003|ref|ZP_10410255.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter sp. Ag1]
gi|394733507|gb|EJF33124.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter sp. Ag1]
Length = 369
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 205/375 (54%), Gaps = 35/375 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLMQQGYKVEGLFMKNWEEDDGEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF +F+ R++ G I+ + G+ +G+H G +
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GETVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVANNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLM---IEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P K R+ C + E +E V+ E + GQ
Sbjct: 295 WVDREPLTAPLSCTVKTRYRQTDIPCTITPLDAERIE--------VRFEEPVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVI 380
A FY G C+G G+I
Sbjct: 347 AVFYLGEVCLGGGII 361
>gi|37679527|ref|NP_934136.1| tRNA-specific 2-thiouridylase MnmA [Vibrio vulnificus YJ016]
gi|61217310|sp|Q7MLT4.1|MNMA_VIBVY RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|37198271|dbj|BAC94107.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Vibrio vulnificus YJ016]
Length = 374
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 208/370 (56%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDDSEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHKINFAAEYWDNVFEYFLSEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGEKPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E+ G+ LG+H G +
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGNI-ESPEGEVLGQHQGLMY 240
Query: 259 YTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD+K NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + + GQ A FYQ
Sbjct: 301 EREPIRDVMKCTVKTRYRQQDIPCTII--PIDD--ENIKVI-FDEPEIAVTPGQSAVFYQ 355
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 356 GDVCLGGGII 365
>gi|397663816|ref|YP_006505354.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Legionella pneumophila subsp. pneumophila]
gi|395127227|emb|CCD05417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Legionella pneumophila subsp. pneumophila]
Length = 361
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 204/370 (55%), Gaps = 26/370 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL G+ ++K W Q+D ++ CP +D+ A+AVC+
Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHNDY---CPAAKDLADAQAVCN 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +PL V+ + EYW V +Y + EY GRTPNPDVLCN IKF AF++ ++ DY+
Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALTLGADYI 120
Query: 140 ASGHYAK-VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYAK + S +K +KD+ KDQTYFL + L + IFP+G +K ++
Sbjct: 121 ATGHYAKNTIEGSIGYLFK------AKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQI 174
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+FA Q L +KDS GICF+G+ +F F+ I G I ++ G LG+H G F
Sbjct: 175 REFARQLGLVTHAKKDSTGICFIGEKRFKTFLNEFILAKSGEI-KSTGGKTLGQHDGLMF 233
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + G PWYVV+KD+ +N ++V++ + G + WL+
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293
Query: 313 LPPEEISRLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
E L C K R+ C MI ++ N V S + + GQF FY+
Sbjct: 294 Y--ENHLPLTCFAKTRYRQTDQAC--MISPPDN---NQHYVMFSSPQRAITPGQFIVFYE 346
Query: 371 GTRCIGSGVI 380
+C+G I
Sbjct: 347 KNQCLGGATI 356
>gi|386043823|ref|YP_005962628.1| tRNA methyl transferase [Listeria monocytogenes 10403S]
gi|404410813|ref|YP_006696401.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC5850]
gi|345537057|gb|AEO06497.1| tRNA methyl transferase [Listeria monocytogenes 10403S]
gi|404230639|emb|CBY52043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC5850]
Length = 371
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 202/368 (54%), Gaps = 16/368 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+D+P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 65 NQIDIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGAMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ F +F++ ++ G + + G+ LGKH G +
Sbjct: 180 REIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLD-GEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
YTIGQR GL + G PW+VV K++K NV+FV + ++ + + + E
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKNLKENVLFVEQGFHHETLYSDSLIATDISFTTN--AE 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ ++C + + + + EDG A V ++ + + GQ FY G C+G
Sbjct: 297 KPKTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDVCLG 353
Query: 377 SGVILESW 384
G I W
Sbjct: 354 GGTIDTVW 361
>gi|52841619|ref|YP_095418.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378777254|ref|YP_005185691.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
[Legionella pneumophila subsp. pneumophila ATCC 43290]
gi|81603374|sp|Q5ZVQ1.1|MNMA_LEGPH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|52628730|gb|AAU27471.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
[Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|307610092|emb|CBW99633.1| hypothetical protein LPW_14011 [Legionella pneumophila 130b]
gi|364508068|gb|AEW51592.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
[Legionella pneumophila subsp. pneumophila ATCC 43290]
Length = 361
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 204/370 (55%), Gaps = 26/370 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL G+ ++K W Q+D ++ CP +D+ A+AVC+
Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHNDY---CPAAKDLADAQAVCN 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +PL V+ + EYW V +Y + EY GRTPNPDVLCN IKF AF++ ++ DY+
Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALTLGADYI 120
Query: 140 ASGHYAK-VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYAK + S +K +KD+ KDQTYFL + L + IFP+G +K ++
Sbjct: 121 ATGHYAKNTIEGSIGYLFK------AKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQI 174
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+FA Q L +KDS GICF+G+ +F F+ I G I ++ G LG+H G F
Sbjct: 175 REFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFILAKPGEI-KSTGGKTLGQHDGLMF 233
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + G PWYVV+KD+ +N ++V++ + G + WL+
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293
Query: 313 LPPEEISRLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
E L C K R+ C MI ++ N V S + + GQF FY+
Sbjct: 294 Y--ENHLPLTCFAKTRYRQTDQAC--MISPPDN---NQHYVMFSSPQRAITPGQFIVFYE 346
Query: 371 GTRCIGSGVI 380
+C+G I
Sbjct: 347 KNQCLGGATI 356
>gi|16800615|ref|NP_470883.1| tRNA-specific 2-thiouridylase MnmA [Listeria innocua Clip11262]
gi|24638323|sp|Q92BK1.1|MNMA_LISIN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|16414020|emb|CAC96778.1| lin1547 [Listeria innocua Clip11262]
Length = 371
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 200/368 (54%), Gaps = 16/368 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ AT+ L ++KDS GICF+G+ F +F++ ++ G + G+ LGKH G +
Sbjct: 180 REIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPG-DMRTLNGEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
YTIGQR GL + G PW+VV KD+KNNV+FV + ++ + + + E
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDISFTTN--SE 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ C + + + + EDG A V ++ + + GQ FY G C+G
Sbjct: 297 KPKTFVCTAKFRYRQTDTKVTVNMREDG---TAEVVFADPVRAITPGQAVVFYDGDICLG 353
Query: 377 SGVILESW 384
G I W
Sbjct: 354 GGTIDTVW 361
>gi|148980425|ref|ZP_01816047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrionales bacterium SWAT-3]
gi|145961228|gb|EDK26541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrionales bacterium SWAT-3]
Length = 378
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 206/373 (55%), Gaps = 22/373 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQ---EYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A GHY + + ++ KP +L D KDQ+YFL LS Q+ R +FP+G + K
Sbjct: 129 IAMGHYVRRTFPTQEELEAGVKPEMLR-GLDSNKDQSYFLYTLSSDQVARSLFPVGELEK 187
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + DL +KDS GICF+G+ KF+EF+ +++ G I E G +GKH G
Sbjct: 188 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGDI-ETPEGKVIGKHNG 246
Query: 256 FWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
++T+GQR+GL + G PW+V EKD+K NV+ + K L
Sbjct: 247 LMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSEGLIASQL 306
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ P E+ K R+ C ++ ++D ENI V+ E + GQ A
Sbjct: 307 HWVNRTPIAEVMTCTVKTRYRQTDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAV 361
Query: 368 FYQGTRCIGSGVI 380
FYQ C+G G+I
Sbjct: 362 FYQDDVCLGGGII 374
>gi|389841356|ref|YP_006343440.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter sakazakii ES15]
gi|387851832|gb|AFJ99929.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter sakazakii ES15]
Length = 369
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 209/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDTIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P K R+ C + ++D + I VV E + GQ A F
Sbjct: 295 WVDREPVTAPFTCTVKTRYRQADIPCT--VRPLDD--DRIEVV-FDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y+G C+G G+I
Sbjct: 350 YRGEVCLGGGII 361
>gi|169350064|ref|ZP_02867002.1| hypothetical protein CLOSPI_00804 [Clostridium spiroforme DSM 1552]
gi|169293277|gb|EDS75410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium spiroforme DSM 1552]
Length = 387
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/385 (39%), Positives = 218/385 (56%), Gaps = 27/385 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW---FQEDFENFWTE----CPWEEDMK 72
+V + LSGGVDS+VA LL G+ +++ W D T CP E+D
Sbjct: 14 RVVLGLSGGVDSAVAAYLLKKQGYEVIGVFMRNWDSQLNNDILGNPTNDNDICPQEQDYN 73
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AKAV + + ++ V EYW NV +Y ++EYR GRTPNPD+LCN IKF AF++
Sbjct: 74 DAKAVAKCLGIEIKRVDFIKEYWDNVFTYFLDEYRKGRTPNPDILCNKHIKFKAFLNYAK 133
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A+GHYA+VVHS E K S++ D KDQTYFL L+Q QL+ +FPLG
Sbjct: 134 TLNADYIATGHYARVVHS----ENKDSIMLKGIDNNKDQTYFLCQLNQQQLQNSLFPLGE 189
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
I K+EVR+ A + LP D+KDS GICF+G+ F EF+ +I G +++ ETGD +G+
Sbjct: 190 IDKKEVRRLAHELQLPVADKKDSTGICFIGERDFKEFLQNYIPAQSGKMVDIETGDIIGE 249
Query: 253 HWGFWFYTIGQRQ--GLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL--- 307
H G +YTIGQR+ G+ PGG W+VV KD NV++V + D+K L+ G+L
Sbjct: 250 HSGIMYYTIGQRKGLGIGGPGGAWFVVGKDYDKNVLYVCQG----DQKDWLYSSGALISD 305
Query: 308 -KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
W++ P E K R+ + + +E ++ E+ + + + + GQ A
Sbjct: 306 VNWIASNKPTEKISCNAKFRYRQA--DNPIKLEFID---EDKVYLTFDKPVKAVTPGQAA 360
Query: 367 AFYQGTRCIGSGVILESWDDQGFPV 391
FY G C+G G I + D G P+
Sbjct: 361 VFYDGDICLGGGTIETVYKD-GKPI 384
>gi|226330495|ref|ZP_03806013.1| hypothetical protein PROPEN_04413 [Proteus penneri ATCC 35198]
gi|225201290|gb|EEG83644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Proteus penneri ATCC 35198]
Length = 367
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNWEEDDDTEY---CSASTDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELYTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RRDINGKSQLLR-GVDNNKDQSYFLYTLSHEQIAQSLFPVGEMEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF++F++R++ G I+ + G+ +G+H G +
Sbjct: 180 RKIAEKLDLATAKKKDSTGICFIGERKFTDFLSRYLPAKPGPIITVD-GETIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGDDPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+S P E R K R+ C V E+ V+ + GQ A F
Sbjct: 295 WVSREPITEAFRCTVKTRYRQPDIACT-----VTPLSEDKIEVRFDYPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQ C+G G+I
Sbjct: 350 YQDEVCLGGGII 361
>gi|117617943|ref|YP_855954.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|166234841|sp|A0KI53.1|MNMA_AERHH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|117559350|gb|ABK36298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 368
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 211/379 (55%), Gaps = 30/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+
Sbjct: 1 MTDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEY---CSAAQDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAVCD++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAKAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ Y+A+GHY + S+ +P +L D KDQ+YFL LS+AQ+ + +FP+G
Sbjct: 118 EELGATYIATGHYVRRDDSTG----RPRLLR-GLDTNKDQSYFLYTLSEAQVGQSLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A Q DL +KDS GICF+G+ KF +F+A+ + G I E G +G
Sbjct: 173 DLEKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLPAQPGPI-ETVDGKVIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G WYVV+K+V+ N + V++ + RL+ G
Sbjct: 232 EHQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLVVAQGEHP-----RLYSDG 286
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P R K R+ C +I+ ++D E I V+ E +
Sbjct: 287 LIASQLHWVDRTPIRAPRRCTVKTRYRQEDIPC--LIQPIDD--ETIRVI-FDEKQAAVT 341
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 342 PGQSAVFYDGEVCLGGGII 360
>gi|149926700|ref|ZP_01914960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Limnobacter sp. MED105]
gi|149824629|gb|EDM83845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Limnobacter sp. MED105]
Length = 358
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 203/366 (55%), Gaps = 21/366 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V + +SGGVDSSV+ LL G++ ++K W +D + C +D A +V D
Sbjct: 5 VVIGMSGGVDSSVSAWLLKQQGYNVIGLFMKNWEDDDDSEY---CSSRQDWLDAASVADV 61
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
V V +E V+ EY V S + EY GRTPNPD+LCN+ IKF AF+D S+ DY+A
Sbjct: 62 VGVDIEAVNFASEYKDRVFSVFLSEYSAGRTPNPDILCNSEIKFKAFLDHAYSLGADYIA 121
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA+V + + + +V D KDQ+YFL L+QAQL + +FPLG I K EVRK
Sbjct: 122 TGHYARVRELNGEFQLLKAV-----DHSKDQSYFLHRLNQAQLSKTLFPLGEIQKTEVRK 176
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + L N +KDS GICF+G+ F EF+ R++ G IL E G +G+H G FYT
Sbjct: 177 IALELGLANATKKDSTGICFIGERPFREFLNRYLPTAPGPILNDE-GQQIGEHVGLSFYT 235
Query: 261 IGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+GQR+G+ + G PW+V KD++NN ++V + + +++ ++SG
Sbjct: 236 LGQRKGIGIGGQKEGNGEPWFVARKDLQNNTLYVVQGHDHPWLHQKVLVAEQAHYISGHA 295
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + CK R+ +C+ + E G E + +E + GQ A Y+G C
Sbjct: 296 PSDPQHMACKARYRQEDSSCDFKL--TEQGFE----LNFAESQFAVTPGQSAVLYRGDVC 349
Query: 375 IGSGVI 380
+G GVI
Sbjct: 350 LGGGVI 355
>gi|422413000|ref|ZP_16489959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua FSL S4-378]
gi|313618826|gb|EFR90711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua FSL S4-378]
Length = 371
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 202/370 (54%), Gaps = 20/370 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ AT+ L ++KDS GICF+G+ F +F++ ++ G + + G+ LGKH G +
Sbjct: 180 REIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGDMRTLD-GEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYY--SFDKKRRLFRVGSLKWLSGLP 314
YTIGQR GL + G PW+VV KD+KNNV+FV + ++ S + S S P
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDISFTTNSEKP 298
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
+ + + R NL EDG A V ++ + + GQ FY G C
Sbjct: 299 KTFVCTAKFRYRQTDTKVTVNLR----EDG---TAEVVFADPVRAITPGQAVVFYDGDIC 351
Query: 375 IGSGVILESW 384
+G G I W
Sbjct: 352 LGGGTIDTVW 361
>gi|406970599|gb|EKD94927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[uncultured bacterium]
Length = 355
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 199/372 (53%), Gaps = 22/372 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M K KVAV +SGGVDSSVA LL G+ T +++ W ED C +ED
Sbjct: 1 MDVAKHKKVAVGMSGGVDSSVAALLLKDRGYEVTGVFMQCWDVED-----DSCAADEDKA 55
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
YA +D+P + + +EY + V+ Y EY GRTPNPDV+CN IKFG F +
Sbjct: 56 YALQTAMALDIPFKTLDFRNEYKERVIDYFYTEYEAGRTPNPDVMCNKEIKFGIFYEWAM 115
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
FD+VA+GHY+ + + + + + V D KDQ+YFL L Q QL IFPLG
Sbjct: 116 KEGFDFVATGHYSGIENRNGEFKLLKGV-----DGGKDQSYFLYRLGQEQLGHTIFPLGE 170
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A LP+ R +S GICF+G++ +F+ + I E +G ++ + TG+ +G
Sbjct: 171 LHKPEVRKLAKDKMLPSYKRPESMGICFIGEVDIKDFLGKRIDEKKGKVITS-TGEEIGD 229
Query: 253 HWGFWFYTIGQRQGLRLP---GGPWYVVEKDVKNNVVFVSRNYYSFDKK-RRLFRVGSLK 308
H G WF TIGQR G RL G P YV+ KDV N + V S+++ R F V L
Sbjct: 230 HDGVWFLTIGQRHGFRLKKYFGDPMYVIAKDVGTNTLTVG----SYEEALRDKFAVSELS 285
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + + C VR + L V+ GE V LS G+AAGQ A F
Sbjct: 286 WVGANPFDNADEITCDVRI---RHLGKLTPGVVKKSGEQTLNVSLSSKLFGVAAGQSAVF 342
Query: 369 YQGTRCIGSGVI 380
Y+G +G G+I
Sbjct: 343 YKGDEVLGGGII 354
>gi|134093604|ref|YP_001098679.1| tRNA-specific 2-thiouridylase MnmA [Herminiimonas arsenicoxydans]
gi|205816908|sp|A4G213.1|MNMA_HERAR RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|133737507|emb|CAL60550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Herminiimonas arsenicoxydans]
Length = 372
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 198/375 (52%), Gaps = 22/375 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSV+ LL G+ ++K W +D + C +D A +V D
Sbjct: 5 RVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDAASVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
V V +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D + D +
Sbjct: 62 VVGVDIEAVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHAMLLGADMI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V ++ + L + D KDQ+YFL L+QAQL + +FPLG I K EVR
Sbjct: 122 ATGHYARVREVTSGPDAGQVQLLKAVDASKDQSYFLHRLNQAQLSKTLFPLGEIRKTEVR 181
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A Q LPN +KDS GICF+G+ F EF+ R++ G ++ G +G+H G FY
Sbjct: 182 KIAEQLQLPNASKKDSTGICFIGERPFREFLNRYLSYQPGP-MKTPDGTIVGEHVGLSFY 240
Query: 260 TIGQRQGLRLPG-----------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLK 308
T+GQR+G+ L G GPWYV KDV NN +++ + + G +
Sbjct: 241 TLGQRKGIGLGGMKTHKNTDGNSGPWYVARKDVANNTLYIVQGHDHPWLLSSALSAGQMS 300
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++G P E + K R+ C+ +H +N+A+ + GQ A
Sbjct: 301 WVAGRAPSE-ELVAAKTRYRQADVACS---QHAT--ADNLALA-FDTPQWAVTPGQSAVL 353
Query: 369 YQGTRCIGSGVILES 383
YQG C+G G+I S
Sbjct: 354 YQGDVCLGGGIITAS 368
>gi|54294275|ref|YP_126690.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila str.
Lens]
gi|81601380|sp|Q5WWV9.1|MNMA_LEGPL RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|53754107|emb|CAH15580.1| hypothetical protein lpl1340 [Legionella pneumophila str. Lens]
Length = 361
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 204/370 (55%), Gaps = 26/370 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL G+ ++K W Q+D ++ CP +D+ A+AVC+
Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHNDY---CPAAKDLADAQAVCN 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +PL V+ + EYW V +Y + EY GRTPNPDVLCN IKF AF++ ++ DY+
Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNYALTLGADYI 120
Query: 140 ASGHYAK-VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYAK + S +K +KD+ KDQTYFL + L + IFP+G +K ++
Sbjct: 121 ATGHYAKNTIEGSIGYLFK------AKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQI 174
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+FA Q L +KDS GICF+G+ +F F+ I G I ++ G LG+H G F
Sbjct: 175 REFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFILAKPGDI-KSTGGKTLGQHDGLMF 233
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + G PWYVV+KD+ +N ++V++ + G + WL+
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293
Query: 313 LPPEEISRLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
E L C K R+ C MI ++ N V S + + GQF FY+
Sbjct: 294 Y--ENHLPLTCFAKTRYRQTDQAC--MISPPDN---NQHYVMFSNPQRAITPGQFIVFYE 346
Query: 371 GTRCIGSGVI 380
+C+G I
Sbjct: 347 KNQCLGGATI 356
>gi|421497437|ref|ZP_15944606.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas media WS]
gi|407183557|gb|EKE57445.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas media WS]
Length = 368
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 211/379 (55%), Gaps = 30/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+
Sbjct: 1 MTDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEY---CSASQDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAVCD++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAKAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ Y+A+GHY + S+ +P +L D KDQ+YFL LS+AQ+ + +FP+G
Sbjct: 118 EELGATYIATGHYVRRDDSTG----RPRLLR-GLDTNKDQSYFLYTLSEAQVGQSLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A Q DL +KDS GICF+G+ KF +F+A+ + G I E G +G
Sbjct: 173 DLEKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLPAQPGPI-ETVDGKVIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G WYVV+K+V+ N + V++ + RL+ G
Sbjct: 232 EHQGLMYHTLGQRKGLGIGGMKDATEEAWYVVDKEVERNTLVVAQGEHP-----RLYSDG 286
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P R K R+ C +I+ ++D E I V+ E +
Sbjct: 287 LIASQLHWVDRTPIRAPLRCTVKTRYRQQDIPC--LIQPIDD--ETIRVI-FDEKQAAVT 341
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 342 PGQSAVFYDGEVCLGGGII 360
>gi|334144195|ref|YP_004537351.1| tRNA-specific 2-thiouridylase mnmA [Thioalkalimicrobium cyclicum
ALM1]
gi|333965106|gb|AEG31872.1| tRNA-specific 2-thiouridylase mnmA [Thioalkalimicrobium cyclicum
ALM1]
Length = 389
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 208/379 (54%), Gaps = 14/379 (3%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P + KV V LSGGVDSSV LL G+ ++K W +D +++ CP D++
Sbjct: 4 PANQATKVIVGLSGGVDSSVTAWLLKQQGYQVEGLFMKNWEGDDTDDY---CPAAVDLQD 60
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS 133
AVC+Q+D+PL V + EYW+NV + + EY+ GRTPNPD+LCN IKF AF+D +
Sbjct: 61 VFAVCEQLDIPLHVENFAKEYWQNVFEHFLTEYQAGRTPNPDILCNKEIKFKAFLDHALA 120
Query: 134 MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
+ D +A+GHYA+V SA +Y+ L D KDQ+YFL L Q L +FP+G +
Sbjct: 121 LGADKIATGHYARVAQ-SAQGDYQ---LLKGLDPNKDQSYFLYTLQQFALSHTLFPIGHL 176
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K EVR+ A L ++KDS GICF+G+ KF +F+ R++ G ++ E G+ +G+H
Sbjct: 177 PKPEVRRLAEAAGLVVHNKKDSTGICFIGERKFKDFLQRYLPAQPGDMVN-EQGETVGRH 235
Query: 254 WGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
G +YT+GQR+GL + GG PW+VV+K++ N + V++ L
Sbjct: 236 EGLMYYTLGQRKGLGIGGGHGDSGEPWFVVDKNLTTNQLIVAQGDQQPSLYHNALSAQDL 295
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+ G P L K+R+ C + + G+N VV+ + + + GQ
Sbjct: 296 DWVIGHAPPLNQALTAKIRYRQQEQACWIRAFQADSNGKNQIVVEFEQPQKAITPGQSIV 355
Query: 368 FYQGTRCIGSGVILESWDD 386
FY C+G GVI + D+
Sbjct: 356 FYNNEVCLGGGVINDRSDN 374
>gi|269139398|ref|YP_003296099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Edwardsiella tarda EIB202]
gi|387867981|ref|YP_005699450.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Edwardsiella tarda FL6-60]
gi|267985059|gb|ACY84888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Edwardsiella tarda EIB202]
gi|304559294|gb|ADM41958.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Edwardsiella tarda FL6-60]
Length = 367
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDSDEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV ++EYR GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 RLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + + + V D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVRRRDINGTTQLLRGV-----DANKDQSYFLYTLSHQQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KF EF+ R++ G I+ + G+ +G+H G +
Sbjct: 180 RRIAAQLDLATAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GETIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KD+ NNV+ V++ + RLF G L
Sbjct: 239 HTLGQRKGLGIGGTKEGSEEPWYVVDKDLDNNVLVVAQGH----DHPRLFSNGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ + D + IA V+ + + GQ A F
Sbjct: 295 WVDRRPLGAPLRCTVKTRYRQADIPC--LVTPLSD--DRIA-VRFDQPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQ C+G G+I
Sbjct: 350 YQDEVCLGGGII 361
>gi|170727050|ref|YP_001761076.1| tRNA-specific 2-thiouridylase MnmA [Shewanella woodyi ATCC 51908]
gi|205816913|sp|B1KID0.1|MNMA_SHEWM RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|169812397|gb|ACA86981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella woodyi ATCC 51908]
Length = 377
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 202/368 (54%), Gaps = 21/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K A+AVCD
Sbjct: 18 KVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 74
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A ++ DY
Sbjct: 75 KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFADDILDADY 134
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + + D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 135 IAMGHYVRRSDDSGQSQMLRGI-----DGNKDQSYFLYTLSHEQVSRSLFPVGELEKSEV 189
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ KF++F++ + G I AE G+ +G H G +
Sbjct: 190 REIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLPAQPGNIETAE-GEVIGTHQGLMY 248
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVV+K++ NV+ V + F L W+
Sbjct: 249 HTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGNHPRLMSTGFYADQLHWVDR 308
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ P+ +++ K R+ C+L + GE+ V E + GQ A FY
Sbjct: 309 IGPDNGAKITVKTRYRQRDVACSLHYD-----GEDRVKVLFDEPVAAVTPGQSAVFYDAE 363
Query: 373 RCIGSGVI 380
C+G G+I
Sbjct: 364 VCLGGGII 371
>gi|406943153|gb|EKD75220.1| hypothetical protein ACD_44C00201G0019 [uncultured bacterium]
Length = 364
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 210/370 (56%), Gaps = 26/370 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL + G+ ++K W ++D + + C E+D+K A+ VCD
Sbjct: 7 KVIVGMSGGVDSSVAALLLKNQGYITEGLFMKNWEEDDTDTY---CMAEKDLKDAQDVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++++PL V+ + EYW+NV +EEY+ GRTPNPD+LCN IKF AF++ + D++
Sbjct: 64 KLNIPLHRVNFSVEYWENVFENFLEEYQQGRTPNPDILCNKYIKFTAFLNYAKRLGADFI 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ D ++ S+L +KDK KDQTYFL L Q QLK +FPLG + KEEVR
Sbjct: 124 ATGHYAQ---KKEDDDF--SLLCEAKDKKKDQTYFLYTLDQHQLKHSLFPLGKLEKEEVR 178
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A Q N ++KDS GICF+G+ F +F+ R++ G I+ E G +G+H G +Y
Sbjct: 179 LIANQEGFSNYNKKDSTGICFIGERHFKKFLNRYLPAQPGNIVTPE-GKKIGEHTGLMYY 237
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYS---FDKKRRLFRVGSLKWL 310
T+GQRQGL + G PWYV EK++K + V + + F K ++ +
Sbjct: 238 TLGQRQGLGIGGKKGELEAPWYVAEKNLKTKELIVVQTAHHPLLFSKNLICKKIHWIAKT 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
LP +++++ + P C++ E + + + +A GQ FY
Sbjct: 298 PHLPYTCVAKIRYRQLGSP----CDITYSEKEKN----YFISFHHEQRAIAPGQSIVFYD 349
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 350 HENCLGGGII 359
>gi|120598593|ref|YP_963167.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. W3-18-1]
gi|166235084|sp|A1RIW8.1|MNMA_SHESW RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|120558686|gb|ABM24613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella sp. W3-18-1]
Length = 372
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 198/374 (52%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K +VR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHQVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSNGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ
Sbjct: 298 LHWVDRTGPVDGCHITVKTRYRQQDVPCTLTYTD-----EHTLRVVFDEPVAAVTPGQSV 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>gi|335039193|ref|ZP_08532373.1| tRNA-specific 2-thiouridylase mnmA [Caldalkalibacillus thermarum
TA2.A1]
gi|334180927|gb|EGL83512.1| tRNA-specific 2-thiouridylase mnmA [Caldalkalibacillus thermarum
TA2.A1]
Length = 388
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 148/374 (39%), Positives = 204/374 (54%), Gaps = 23/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G ++K W D EN C ED AVC
Sbjct: 22 RVVVGMSGGVDSSVTALLLKEQGFDVIGVFMKNWDDTD-EN--GVCTATEDYHDVVAVCH 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D S+ D+V
Sbjct: 79 QLGIPFYSVNFEREYWDRVFTYFLDEYKAGRTPNPDVMCNKEIKFQAFLDHALSLGADFV 138
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYAKV D + L KD KDQTYFL+ L+QAQL +++FP+G + K++VR
Sbjct: 139 ATGHYAKV-----DLKDGYHRLLRGKDPGKDQTYFLNQLNQAQLSKVLFPIGHLHKQQVR 193
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + LPN +KDS GICF+G+ F F++ ++ G I + TG+ GKH G +Y
Sbjct: 194 QIAEEAGLPNAKKKDSTGICFIGERNFKAFLSNYLPAQPGEIRQKSTGELKGKHDGLMYY 253
Query: 260 TIGQRQ--GLRLPGGPWYVVEKDVKNNVVFVSRN----YYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQ G+ PGGPW+VV+KD+ N+++V Y F+ L W+ G
Sbjct: 254 TIGQRQGLGIGGPGGPWFVVDKDLGRNILYVEAGEDNPYLYFEG----LEASQLNWIKGN 309
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + K R+ C + V DGG V E + + GQ FY G
Sbjct: 310 PPGQRFTCTAKFRYRQPDKPCTV---EVLDGGR--CRVMFDEPQRAITPGQAVVFYHGEE 364
Query: 374 CIGSGVILESWDDQ 387
C+G +I + D+
Sbjct: 365 CLGGAIIDVAIQDE 378
>gi|86147101|ref|ZP_01065418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio sp. MED222]
gi|218710012|ref|YP_002417633.1| tRNA-specific 2-thiouridylase MnmA [Vibrio splendidus LGP32]
gi|85835166|gb|EAQ53307.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio sp. MED222]
gi|218323031|emb|CAV19208.1| Probable tRNA(5-methylaminomethyl-2-thiouridylate)-
methyltransferase [Vibrio splendidus LGP32]
Length = 378
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 204/373 (54%), Gaps = 22/373 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAK---VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A GHY + D KP +L D KDQ+YFL LS Q+ R +FP+G + K
Sbjct: 129 IAMGHYVRRTFPTQEELDAGAKPEMLR-GLDGNKDQSYFLYTLSSDQVARSLFPVGELEK 187
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + DL +KDS GICF+G+ KF+EF+ +++ G I E G +G+H G
Sbjct: 188 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGNI-ETPEGQVIGQHQG 246
Query: 256 FWFYTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
++T+GQR+GL + G PW+V EKD+K NV+ + K L
Sbjct: 247 LMYHTLGQRKGLHIGGTKGGGGNEEPWFVGEKDLKRNVLIAVQGKDHPLLKSEGLIASQL 306
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ P E+ K R+ C ++ ++D ENI V+ E + GQ A
Sbjct: 307 HWVNRTPITEVMTCTVKTRYRQTDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAV 361
Query: 368 FYQGTRCIGSGVI 380
FY C+G G+I
Sbjct: 362 FYLDNVCLGGGII 374
>gi|309775351|ref|ZP_07670356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 3_1_53]
gi|308916868|gb|EFP62603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 3_1_53]
Length = 386
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 209/377 (55%), Gaps = 32/377 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW-------------FQEDFENFWTECP 66
KV + LSGGVDS+VA LL G+ T +++ W Q+D CP
Sbjct: 4 KVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDV------CP 57
Query: 67 WEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGA 126
E+D AK V D++ +PL V EYW +V +Y ++EYR GRTPNPD+LCN IKF A
Sbjct: 58 QEQDYLDAKEVADRLGLPLLRVDFVKEYWDHVFTYFLDEYRKGRTPNPDILCNKYIKFDA 117
Query: 127 FMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRL 186
FM+ + FD +A+GHYA+V HS K S + D KDQTYFL +SQ L+
Sbjct: 118 FMNYARKLGFDVLATGHYAQVDHSG-----KESRMLRGADSNKDQTYFLCQVSQDALRHS 172
Query: 187 IFPLGCISKEEVRKFATQFDLPN-KDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAE 245
+FP+G + K EVR+ A + +L + +KDS GICF+G+ F EF+ ++ +G I++ E
Sbjct: 173 MFPIGHMEKHEVREIAERMELNSVSKKKDSTGICFIGERNFKEFLKNYLPSQDGDIMDIE 232
Query: 246 TGDFLGKHWGFWFYTIGQRQGLRLPG--GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
T + +G+H G +YTIGQR+GL + G GPW+VV KDV+ N+++V+ S
Sbjct: 233 TLETIGRHGGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLYSDSCI 292
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
V + W S P+ L C + + ++++ +++ + QL + AG
Sbjct: 293 VSGVNWFSENKPQ--GELVCTAKFRYRQPDNDVILRFIDNTTVYVRYPQLV---SSVTAG 347
Query: 364 QFAAFYQGTRCIGSGVI 380
Q A FYQ C+G GVI
Sbjct: 348 QEAVFYQNEECLGGGVI 364
>gi|261821429|ref|YP_003259535.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium wasabiae WPP163]
gi|261605442|gb|ACX87928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pectobacterium wasabiae WPP163]
gi|385871668|gb|AFI90188.1| tRNA-specific 2-thiouridylase mnmA [Pectobacterium sp. SCC3193]
Length = 368
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 204/374 (54%), Gaps = 28/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RHDVDGKSRLLR-GMDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + +L +KDS GICF+G+ KF++F+AR++ G IL + +G+H G +
Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLPAQPGPILSVDDNKPMGQHQGLMY 239
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN+++V++ + + RL G L
Sbjct: 240 HTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGH----EHPRLMSYGLIAQQLH 295
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C V G++ V+ E + GQ A F
Sbjct: 296 WVDRQPLTAELRCTVKTRYRQADIPCT-----VTPLGDDRITVRFDEPVAAVTPGQSAVF 350
Query: 369 YQGTRCIGSGVILE 382
Y C+G G+I E
Sbjct: 351 YLDDVCLGGGIIEE 364
>gi|194429520|ref|ZP_03062041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B171]
gi|415794701|ref|ZP_11496516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E128010]
gi|419305789|ref|ZP_13847697.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC11D]
gi|419316130|ref|ZP_13857950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC12A]
gi|419322141|ref|ZP_13863864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC12B]
gi|419333884|ref|ZP_13875428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC12D]
gi|419339087|ref|ZP_13880570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC12E]
gi|420390743|ref|ZP_14890007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EPEC C342-62]
gi|194412394|gb|EDX28695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B171]
gi|323163677|gb|EFZ49499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E128010]
gi|378151034|gb|EHX12147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC11D]
gi|378171064|gb|EHX31936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC12B]
gi|378172823|gb|EHX33670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC12A]
gi|378186097|gb|EHX46720.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC12D]
gi|378192621|gb|EHX53176.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC12E]
gi|391313932|gb|EIQ71499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EPEC C342-62]
Length = 368
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTATADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|423395309|ref|ZP_17372510.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-1]
gi|423406184|ref|ZP_17383333.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-3]
gi|401654720|gb|EJS72259.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-1]
gi|401660178|gb|EJS77660.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-3]
Length = 371
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 209/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K+N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKDNILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E + K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SNKAKETEFKCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|423200588|ref|ZP_17187168.1| tRNA-specific 2-thiouridylase mnmA [Aeromonas veronii AER39]
gi|404619996|gb|EKB16900.1| tRNA-specific 2-thiouridylase mnmA [Aeromonas veronii AER39]
Length = 368
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 211/379 (55%), Gaps = 30/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+
Sbjct: 1 MTDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEY---CSAAQDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAVCD++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAKAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ Y+A+GHY + S+ +P +L D KDQ+YFL LS+ Q+ + +FP+G
Sbjct: 118 EELGATYIATGHYVRRDDSTG----RPRLLR-GLDTNKDQSYFLYTLSEKQVGQSLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A Q DL +KDS GICF+G+ KF +F+A+ + G I E G +G
Sbjct: 173 DLEKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLPAQPGKI-ETVDGKVIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G WYVV+K+V+ NV+ V++ + RL+ G
Sbjct: 232 EHQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNVLVVAQGEHP-----RLYSDG 286
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P E R K R+ C +I+ ++D I V+ E +
Sbjct: 287 LIASQLHWVDRTPIREPRRCTVKTRYRQQDIPC--LIQPIDD--LTIRVI-FDEKQAAVT 341
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 342 PGQSAVFYDGEMCLGGGII 360
>gi|152989329|ref|YP_001347945.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PA7]
gi|205816889|sp|A6V4G0.1|MNMA_PSEA7 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|150964487|gb|ABR86512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas aeruginosa PA7]
Length = 375
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/390 (35%), Positives = 210/390 (53%), Gaps = 23/390 (5%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
+S S P + +V V +SGGVDSSV+ LL G+ ++K W ++D + C
Sbjct: 1 MSESAPTPRRERVIVGMSGGVDSSVSALLLQQQGYQVEGLFMKNWDEDDGTEY---CTAR 57
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED+ A+AVCD++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+
Sbjct: 58 EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFL 117
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
D + D +A+GHY + D + + +L+ D KDQ+YFL + Q+ R +F
Sbjct: 118 DYALMLGADLIATGHYVR----RRDLDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLF 172
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G + K EVR A + L +KDS GICF+G+ +F++F+ +++ G I E G
Sbjct: 173 PVGELEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETTEGK 231
Query: 249 FLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLF 302
+G+H G ++TIGQRQGL + G PWYV+ KD++ NV+ V + R
Sbjct: 232 VIGRHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRAL 291
Query: 303 RVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
+ W++ + E RL+ KVR+ +C ++E DG + E + +
Sbjct: 292 LASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTADGYRAV----FDEPQRAVTP 345
Query: 363 GQFAAFYQGTRCIGSGVI--LESWDDQGFP 390
GQ FY G C+G GVI E+WD G P
Sbjct: 346 GQSVVFYDGEVCLGGGVIETAEAWDFGGRP 375
>gi|228993134|ref|ZP_04153056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus pseudomycoides DSM 12442]
gi|228999183|ref|ZP_04158765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides Rock3-17]
gi|229006731|ref|ZP_04164365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides Rock1-4]
gi|228754592|gb|EEM04003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides Rock1-4]
gi|228760800|gb|EEM09764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides Rock3-17]
gi|228766593|gb|EEM15234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus pseudomycoides DSM 12442]
Length = 376
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 207/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D F C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGF---CTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--IDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMAKEAGLATATKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ + + ++ V+D N + E + + GQ FY
Sbjct: 298 SNRAKEKEFKCTAKFRYRQ--EDNKVTVQIVDD---NTVRILCDEPIRAITPGQAVVFYD 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|254283074|ref|ZP_04958042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium NOR51-B]
gi|219679277|gb|EED35626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium NOR51-B]
Length = 363
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 208/378 (55%), Gaps = 23/378 (6%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M KV V +SGGVDSSV+ LL AG+ ++K W ++D + C +ED+
Sbjct: 1 MSLNANTKVIVGMSGGVDSSVSALLLRDAGYRVEGLFMKNWEEDDGTEY---CTAKEDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
A +V D++ +PL + EYW NV + + EYR GRTPNPD+LCN IKF AF+D +
Sbjct: 58 DASSVADRLGIPLHEANFAAEYWDNVFEHFLSEYRAGRTPNPDILCNREIKFRAFIDYAT 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ D +A+GHY + H E K ++L+ D KDQ+YFL + +L R +FP+G
Sbjct: 118 LLGADCIATGHYVRRGHF----ESKATLLK-GLDTNKDQSYFLHQVGNVELGRTLFPVGE 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
I K VR+ A + L +KDS GICF+G+ +F +F+ +++ G I E G +G+
Sbjct: 173 IDKPRVRQLAEENQLVTAKKKDSTGICFIGERRFKDFLRQYLPAQPGNI-EDLDGRTIGQ 231
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVG 305
H G ++TIGQRQGL + G PWYVV KD+ NV+ V++ N + RL G
Sbjct: 232 HIGLMYHTIGQRQGLGIGGLADHDEAPWYVVGKDLDRNVLLVAQGNDHPALFSSRLL-TG 290
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+ W+SG PP +L K+R+ +C+L+ DGG + + + GQ
Sbjct: 291 DIFWISGEPPAPSVQLSAKIRYRQPDQDCHLV---AIDGGFEVV---FDTPQRAVTPGQS 344
Query: 366 AAFYQGTRCIGSGVILES 383
FY G C+G GVI +S
Sbjct: 345 VVFYDGECCLGGGVIEDS 362
>gi|229098868|ref|ZP_04229804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-29]
gi|229105030|ref|ZP_04235684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-28]
gi|229117893|ref|ZP_04247255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock1-3]
gi|407706923|ref|YP_006830508.1| electron transfer flavoprotein subunit beta [Bacillus thuringiensis
MC28]
gi|228665550|gb|EEL21030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock1-3]
gi|228678407|gb|EEL32630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-28]
gi|228684541|gb|EEL38483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-29]
gi|407384608|gb|AFU15109.1| tRNA -methyltransferase [Bacillus thuringiensis MC28]
Length = 376
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 209/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K+N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKDNILYVDQGFHNELLYGDEVIATNVGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E + K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 298 SNKAKETEFKCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|387129084|ref|YP_006291974.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Methylophaga sp. JAM7]
gi|386270373|gb|AFJ01287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylophaga sp. JAM7]
Length = 367
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 204/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V LSGGVDSSV+ LL + ++K W DF + +EC EED K A +V D
Sbjct: 6 KVVVGLSGGVDSSVSALLLKQQAYDVEGLFMKNWV--DFAD-ESECTIEEDRKDALSVAD 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+V +P + EYW V + ++EY+ GRTPNPD+LCN IKF AF+D ++ +
Sbjct: 63 KVGIPFHEANFAMEYWDFVFKHFLDEYQAGRTPNPDILCNREIKFKAFLDHAMALGGYLI 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V D E++ L D KDQ+YFL L QAQL R +FPLG + K EVR
Sbjct: 123 ATGHYARV--REVDGEFQ---LLKGLDGNKDQSYFLYTLGQAQLSRTLFPLGELPKTEVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + D+KDS GICF+G+ +F EF++R+I G + E GD +G+H G +Y
Sbjct: 178 QIADKAGFITADKKDSTGICFIGERRFREFLSRYIPAKPGEMRTPE-GDLIGEHIGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + G PW+V KD++ ++V + + + +L L W++G
Sbjct: 237 TLGQRQGLGIGGRPNSTGEPWFVAGKDMETRTLYVVQGDHEWLYSDQLI-AEQLSWVAGN 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP R K R+ +C ++ + VV + + + GQ FYQ
Sbjct: 296 PPSLPCRATAKTRYRQPDQDCV-----IDQNSQGQIVVTFDDKQRAVTPGQSVVFYQDAV 350
Query: 374 CIGSGVILES 383
C+G G+I+++
Sbjct: 351 CLGGGIIIQT 360
>gi|325983111|ref|YP_004295513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosomonas sp. AL212]
gi|325532630|gb|ADZ27351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosomonas sp. AL212]
Length = 359
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 141/374 (37%), Positives = 203/374 (54%), Gaps = 30/374 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA +L G+ ++K W +D + + C +D A +V D
Sbjct: 5 RVIVGMSGGVDSSVAAYVLKQQGYDVVGLFMKNWEDDDTDEY---CSSRQDFIDAVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+D+P+E+V+ + EY + V S + EY+ GRTPNPDVLCN IKF AF+D + + DY+
Sbjct: 62 VIDIPIEIVNFSIEYKERVFSQFLAEYQAGRTPNPDVLCNAEIKFKAFLDHANKLGADYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V + V +L K D KDQ+YFL L+QAQL + +FP+G + K E
Sbjct: 122 ATGHYARVRKAGG-------VFQLLKGEDGNKDQSYFLYRLNQAQLAKSLFPIGHLYKRE 174
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VRK A + LPN +KDS GICF+G+ F EF+ R++ G I + G +G+H G
Sbjct: 175 VRKIARELKLPNSSKKDSTGICFIGERPFREFLNRYLPHEPGEI-QTTDGKVIGEHIGLM 233
Query: 258 FYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + G PW+V KD+ NV+ V + + D R + L W+
Sbjct: 234 YYTIGQRQGLGIGGIRNGGDEPWFVAAKDMNRNVLIVVQGHNHPDLFRPSLKAIDLSWID 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNC---NLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
P K R+ C NL E E V+ +++ + GQ
Sbjct: 294 DKQPHCNWVYAAKTRYRQTDAPCTITNLSHESCE--------VEFAQNQWAITPGQSVVI 345
Query: 369 YQGTRCIGSGVILE 382
Y+ C+G GVIL+
Sbjct: 346 YESQVCLGGGVILQ 359
>gi|423377748|ref|ZP_17355032.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1O-2]
gi|423440856|ref|ZP_17417762.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4X2-1]
gi|423448976|ref|ZP_17425855.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5O-1]
gi|423463920|ref|ZP_17440688.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6O-1]
gi|423533284|ref|ZP_17509702.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB2-9]
gi|423541461|ref|ZP_17517852.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB4-10]
gi|423547697|ref|ZP_17524055.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB5-5]
gi|423622518|ref|ZP_17598296.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD148]
gi|401129570|gb|EJQ37253.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5O-1]
gi|401172649|gb|EJQ79870.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB4-10]
gi|401179418|gb|EJQ86591.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB5-5]
gi|401260638|gb|EJR66806.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD148]
gi|401636014|gb|EJS53768.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1O-2]
gi|402417517|gb|EJV49817.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4X2-1]
gi|402420187|gb|EJV52458.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6O-1]
gi|402463503|gb|EJV95203.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB2-9]
Length = 371
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 209/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K+N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKDNILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E + K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SNKAKETEFKCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|237809068|ref|YP_002893508.1| tRNA-specific 2-thiouridylase MnmA [Tolumonas auensis DSM 9187]
gi|259495840|sp|C4L952.1|MNMA_TOLAT RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|237501329|gb|ACQ93922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Tolumonas auensis DSM 9187]
Length = 369
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 208/383 (54%), Gaps = 37/383 (9%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M + +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C D+
Sbjct: 1 MTNNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDSDEY---CSAATDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIKLHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ DY+A+GHY + S+ P +L D KDQ+YFL LS Q+ + +FP+G
Sbjct: 118 EDLGADYIATGHYVRRDDSTG----HPRLLR-GLDNNKDQSYFLYTLSSEQIAQSLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K +VR A Q L +KDS GICF+G+ KF+EF+ R++ GVI E G +G
Sbjct: 173 DLEKPQVRAIAEQLGLATAKKKDSTGICFIGERKFTEFLGRYLPAQPGVI-ETVDGKVIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KDV NV+ V++ + RLF
Sbjct: 232 EHQGLMYHTLGQRKGLGIGGLKDGDENPWYVVDKDVARNVLIVAQGH----DHPRLFS-- 285
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIE--------HVEDGGENIAVVQLSEDD 357
GL +++ + +VR P ++C + HVE ++ V +
Sbjct: 286 -----DGLIAKQLDWVDRQVRREP--FDCVVKTRYRQQDIPCHVEPLDDDTIKVTFASPQ 338
Query: 358 QGLAAGQFAAFYQGTRCIGSGVI 380
+ GQ A FY G C+G G+I
Sbjct: 339 AAVTPGQSAVFYLGEECLGGGII 361
>gi|153835174|ref|ZP_01987841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio harveyi HY01]
gi|148868331|gb|EDL67456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio harveyi HY01]
Length = 374
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 206/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGEKPQMLR-GLDSNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ R++ G I E G+ +G+H G +
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQGLMY 240
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD++ NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 301 DREPIRDVMKCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYK 355
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 356 DDVCLGGGII 365
>gi|423417685|ref|ZP_17394774.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3X2-1]
gi|401106856|gb|EJQ14813.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3X2-1]
Length = 371
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 209/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SNKAKEKEFKCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|424799212|ref|ZP_18224754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter sakazakii 696]
gi|429115178|ref|ZP_19176096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter sakazakii 701]
gi|429122198|ref|ZP_19182796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter sakazakii 680]
gi|449308612|ref|YP_007440968.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter sakazakii SP291]
gi|423234933|emb|CCK06624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter sakazakii 696]
gi|426318307|emb|CCK02209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter sakazakii 701]
gi|426323345|emb|CCK13533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter sakazakii 680]
gi|449098645|gb|AGE86679.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter sakazakii SP291]
Length = 369
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDTIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P K R+ C + ++D + I VV E + GQ A F
Sbjct: 295 WVDREPVTAPFTCTVKTRYRQADIPCT--VRPLDD--DRIEVV-FDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YLGEVCLGGGII 361
>gi|226704776|sp|B8CLH4.1|MNMA_SHEPW RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|212556171|gb|ACJ28625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella piezotolerans WP3]
Length = 371
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 205/386 (53%), Gaps = 29/386 (7%)
Query: 2 TQIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENF 61
T I+P +L G KV V +SGGVDSSV+ LL G+ ++K W ++D + +
Sbjct: 2 TSIDPTHL--------GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY 53
Query: 62 WTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTR 121
C +D+K A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN
Sbjct: 54 ---CAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKE 110
Query: 122 IKFGAFMD-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQ 180
IKF AF++ A ++ DY+A GHY + + V D KDQ+YFL LS
Sbjct: 111 IKFKAFLEFADEILDADYIAMGHYVRRRDIDGTSQMLRGV-----DGNKDQSYFLYTLSH 165
Query: 181 AQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGV 240
Q+ R +FP+G + K EVR A + L D+KDS GICF+G+ KF++F++ + G
Sbjct: 166 EQVARSLFPVGELEKSEVRDIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLPAQPGN 225
Query: 241 ILEAETGDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYS 294
I E G+ +G+H G ++T+GQR+GL + G PWYVVEKD+ NV+ V +
Sbjct: 226 I-ETSEGEVIGQHQGLMYHTLGQRKGLGIGGLKNSSEDPWYVVEKDLVRNVLVVGQGGNH 284
Query: 295 FDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLS 354
L W+ P E +++ K R+ C + D + I V+
Sbjct: 285 PRLMSNGLLANQLHWVDRKGPAEGAKITLKTRYRQHDVPCTVTY----DSDDQIRVI-FD 339
Query: 355 EDDQGLAAGQFAAFYQGTRCIGSGVI 380
E + GQ A FY G C+G G+I
Sbjct: 340 EAVAAVTPGQSAVFYDGEICLGGGII 365
>gi|156934382|ref|YP_001438298.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter sakazakii ATCC
BAA-894]
gi|166234851|sp|A7MFV2.1|MNMA_CROS8 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|156532636|gb|ABU77462.1| hypothetical protein ESA_02213 [Cronobacter sakazakii ATCC BAA-894]
Length = 369
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDTIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P K R+ C + ++D + I VV E + GQ A F
Sbjct: 295 WVDREPVTAPFTCSVKTRYRQADIPCT--VRPLDD--DRIEVV-FDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YLGEVCLGGGII 361
>gi|16803552|ref|NP_465037.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes EGD-e]
gi|47097209|ref|ZP_00234773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes str. 1/2a F6854]
gi|254828254|ref|ZP_05232941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL N3-165]
gi|254912186|ref|ZP_05262198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes J2818]
gi|254936514|ref|ZP_05268211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes F6900]
gi|284801902|ref|YP_003413767.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578]
gi|284995044|ref|YP_003416812.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923]
gi|386047164|ref|YP_005965496.1| tRNA methyl transferase [Listeria monocytogenes J0161]
gi|386050488|ref|YP_005968479.1| tRNA-specific 2-thiouridylase mnmA [Listeria monocytogenes FSL
R2-561]
gi|386053765|ref|YP_005971323.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes Finland 1998]
gi|404284004|ref|YP_006684901.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2372]
gi|405758560|ref|YP_006687836.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2479]
gi|24638317|sp|Q8Y714.1|MNMA_LISMO RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|16410941|emb|CAC99590.1| lmo1512 [Listeria monocytogenes EGD-e]
gi|47014423|gb|EAL05392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes str. 1/2a F6854]
gi|258600642|gb|EEW13967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL N3-165]
gi|258609108|gb|EEW21716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes F6900]
gi|284057464|gb|ADB68405.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578]
gi|284060511|gb|ADB71450.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923]
gi|293590159|gb|EFF98493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes J2818]
gi|345534155|gb|AEO03596.1| tRNA methyl transferase [Listeria monocytogenes J0161]
gi|346424334|gb|AEO25859.1| tRNA-specific 2-thiouridylase mnmA [Listeria monocytogenes FSL
R2-561]
gi|346646416|gb|AEO39041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes Finland 1998]
gi|404233506|emb|CBY54909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2372]
gi|404236442|emb|CBY57844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2479]
gi|441471205|emb|CCQ20960.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes]
gi|441474334|emb|CCQ24088.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes N53-1]
Length = 371
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 201/368 (54%), Gaps = 16/368 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGAMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ F +F++ ++ G + + G+ LGKH G +
Sbjct: 180 REIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLD-GEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
YTIGQR GL + G PW+VV KD+K NV+FV + ++ + + + E
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTN--AE 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ ++C + + + + EDG A V ++ + + GQ FY G C+G
Sbjct: 297 KPKTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDVCLG 353
Query: 377 SGVILESW 384
G I W
Sbjct: 354 GGTIDTVW 361
>gi|92114562|ref|YP_574490.1| tRNA-specific 2-thiouridylase MnmA [Chromohalobacter salexigens DSM
3043]
gi|122419524|sp|Q1QUR7.1|MNMA_CHRSD RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|91797652|gb|ABE59791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chromohalobacter salexigens DSM 3043]
Length = 384
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 131/374 (35%), Positives = 202/374 (54%), Gaps = 24/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV L G++ ++K W ++D + C +ED+ A+AVCD
Sbjct: 17 KVIVGMSGGVDSSVTALTLLEQGYAVEGLFMKNWDEDDGTEY---CTAKEDLADAQAVCD 73
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + L + EYW NV + + EY+ GRTPNPD+LCN IKF F++ + + +
Sbjct: 74 TLGITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKVFLEYAEMLGAEKI 133
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHY + Q ++ L K D KDQ+YFL + + + R +FP+G + K E
Sbjct: 134 ATGHYVR-------QGWRDGHCRLLKGLDANKDQSYFLHAVPEVAIARTLFPVGEMEKSE 186
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR A + L +KDS GICF+G+ +FS+F+ +++ GVI E G+ +G+H G
Sbjct: 187 VRAIAERHGLTTARKKDSTGICFIGERRFSDFLKQYLPAQPGVI-ETPEGEVIGEHMGLM 245
Query: 258 FYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YT+GQRQGL + P PWYV KD++ NV+ + + ++W++
Sbjct: 246 YYTLGQRQGLGIGGLPNHPDAPWYVAAKDLERNVLIAVQGKHHPLLYTDSLSTEPVEWVA 305
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G PP +RLQ K R+ C++ + +EDGG + E + + GQ Y G
Sbjct: 306 GQPPAPEARLQAKTRYRQQDVACHVRV--LEDGGVE---ARFDEPQRAVTPGQSLVLYDG 360
Query: 372 TRCIGSGVILESWD 385
C+G GVI +W+
Sbjct: 361 DICLGGGVIRSTWN 374
>gi|421180222|ref|ZP_15637789.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa E2]
gi|404545902|gb|EKA54971.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa E2]
Length = 375
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 138/390 (35%), Positives = 212/390 (54%), Gaps = 23/390 (5%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
+S S P + +V V +SGGVDSSV+ LL G+ ++K W ++D + C
Sbjct: 1 MSESAPTPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEY---CTAR 57
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED+ A+AVCD++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+
Sbjct: 58 EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFL 117
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
D + D +A+GHY + D++ + +L+ D KDQ+YFL + Q+ R +F
Sbjct: 118 DYALMLGADLIATGHYVR----RRDRDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLF 172
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G + K EVR A + L +KDS GICF+G+ +F++F+ +++ G I E G
Sbjct: 173 PVGELEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETTEGK 231
Query: 249 FLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLF 302
+G+H G ++TIGQRQGL + G PWYV+ KD++ NV+ V + R
Sbjct: 232 VIGRHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRAL 291
Query: 303 RVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
+ W++ + E RL+ KVR+ +C ++E + +G + E + +
Sbjct: 292 LASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKIAEGYRAV----FDEPQRAVTP 345
Query: 363 GQFAAFYQGTRCIGSGVI--LESWDDQGFP 390
GQ FY G C+G GVI E+WD G P
Sbjct: 346 GQSVVFYDGDVCLGGGVIETAEAWDFGGRP 375
>gi|157370264|ref|YP_001478253.1| tRNA-specific 2-thiouridylase MnmA [Serratia proteamaculans 568]
gi|166991124|sp|A8GDD5.1|MNMA_SERP5 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|157322028|gb|ABV41125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Serratia proteamaculans 568]
Length = 367
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 203/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + D+
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDSKSRLLR-GVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIVSVD-GQTVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NNV+ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ LP R K R+ C V E V+ E + GQ A F
Sbjct: 295 WVDRLPLSGPFRCTVKTRYRQQDIPCT-----VTPLDEQRIEVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQ C+G G+I
Sbjct: 350 YQDEICLGGGII 361
>gi|433444170|ref|ZP_20409180.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anoxybacillus flavithermus TNO-09.006]
gi|432001818|gb|ELK22687.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anoxybacillus flavithermus TNO-09.006]
Length = 371
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 208/367 (56%), Gaps = 16/367 (4%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
+K +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 5 KKMARVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVV 61
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
VC+Q+ +P V+ +YW+ V +Y ++EY+ GRTPNPDV+CN IKF AF++ ++
Sbjct: 62 RVCNQIGIPYYAVNFEKQYWEKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAMALG 121
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
DY+A+GHYA+V + D EY+ L D KDQTYFL+ L QAQL +++FP+G + K
Sbjct: 122 ADYLATGHYARVAYR--DGEYQ---LLRGLDANKDQTYFLNQLGQAQLSKVLFPIGELQK 176
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
+VR+ A + L +KDS GICF+G+ F +F++ ++ G ++ G+ G H G
Sbjct: 177 SKVREIAKEAGLATAGKKDSTGICFIGERNFKQFLSNYLPAQPGE-MQTLDGEVKGTHDG 235
Query: 256 FWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
+YTIGQR GL + G PW+VV K++K+N+++V++ + + ++ W+SG
Sbjct: 236 LMYYTIGQRHGLGIGGSGEPWFVVGKNLKDNILYVAQGFDNELLYSDAIIATNVNWVSGR 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P E K R+ + + +E ++ E A V + + + GQ FY G +
Sbjct: 296 KPSEPMSCTAKFRYRQP--DVPVTVEMID---ETTARVSFEQRVRAVTPGQAVVFYNGEQ 350
Query: 374 CIGSGVI 380
C+G G I
Sbjct: 351 CLGGGTI 357
>gi|23099469|ref|NP_692935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase
[Oceanobacillus iheyensis HTE831]
gi|30173412|sp|Q8CXC7.1|MNMA_OCEIH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|22777698|dbj|BAC13970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Oceanobacillus iheyensis HTE831]
Length = 371
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 140/377 (37%), Positives = 209/377 (55%), Gaps = 29/377 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M + K +V V +SGGVDSSVA LL G+ ++K W +D + F C ED
Sbjct: 1 MKNNKDTRVVVGMSGGVDSSVAALLLKQQGYDVVGIFMKNW--DDTDEFGV-CTATEDFD 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+++P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVVRVCNQLEIPYYSVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A+GHYA+V D+ + +L D+ KDQTYFL+ LS+ L +++FPLG
Sbjct: 118 ALGADYLATGHYAQV---RRDKNGRVEMLR-GNDENKDQTYFLNQLSEDVLDKVMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETGD 248
+ K EVRK A + +L ++KDS GICF+G+ F EF++ ++ GEM+ + G
Sbjct: 174 LPKSEVRKIAKEHELVTAEKKDSTGICFIGERNFKEFLSEYLPAQPGEMQTL-----DGI 228
Query: 249 FLGKHWGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
G H G +YT+GQRQGL + G PW+VV K++ +N+++V + Y +
Sbjct: 229 VKGSHDGLMYYTLGQRQGLGIGGSGDPWFVVGKNLTDNILYVGQGYENDYLYSNALVATD 288
Query: 307 LKWLSGLPPEEIS-RLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
+ W+ P++IS C K R+ N+ I+ EN V ED + + G
Sbjct: 289 INWIQ---PDKISDTFNCTAKFRYRQQDSEVNVTIK-----SENEVYVAFKEDQRAITPG 340
Query: 364 QFAAFYQGTRCIGSGVI 380
Q FY G C+G G I
Sbjct: 341 QAVVFYDGEVCLGGGTI 357
>gi|424045333|ref|ZP_17782898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HENC-03]
gi|408886383|gb|EKM25057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HENC-03]
Length = 374
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 206/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGEKPQMLR-GLDGNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ R++ G I E G+ +G+H G +
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQGLMY 240
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD++ NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 301 DREPIRDVMKCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYK 355
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 356 DDVCLGGGII 365
>gi|433463444|ref|ZP_20420998.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halobacillus sp. BAB-2008]
gi|432187539|gb|ELK44819.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halobacillus sp. BAB-2008]
Length = 370
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 200/370 (54%), Gaps = 16/370 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M K +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 1 MKEPKDTRVVVGMSGGVDSSVAALLLKEQGYDVVGIFMKNWDDTD-EN--GVCTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+D+P V+ +YW V +Y +EEY+ GRTPNPDV+CN IKF AFMD
Sbjct: 58 DVIRVCNQLDIPYYAVNFEKQYWDKVFTYFLEEYKKGRTPNPDVMCNKEIKFKAFMDHAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ DY+A+GHYA+V + E V D KDQTYFL+ LSQ L++++FPLG
Sbjct: 118 SLGADYLATGHYAQVRENEGTYEMLRGV-----DNNKDQTYFLNQLSQDVLEKVLFPLGH 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K+EVR+ A + L +KDS GICF+G+ F EF++ ++ G +E G+ G+
Sbjct: 173 MEKKEVRRIAEEHGLATAKKKDSTGICFIGERNFKEFLSEYLPAQPGN-METLDGEVKGR 231
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YT+GQRQGL + G PW+VV K+V+ NV++V + ++ W
Sbjct: 232 HDGLMYYTLGQRQGLGIGGAGDPWFVVGKNVEKNVLYVGQGFHHEALYSDGLIASEANWT 291
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
G P+E K R+ + + + ++DG V E ++ + GQ Y
Sbjct: 292 RGEVPQEPFECTAKFRYRQD--DSAVTVYPLDDG---TWKVMFHEPERAITPGQAVVLYD 346
Query: 371 GTRCIGSGVI 380
G C+G I
Sbjct: 347 GDVCLGGATI 356
>gi|270156742|ref|ZP_06185399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Legionella longbeachae D-4968]
gi|289164811|ref|YP_003454949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Legionella longbeachae NSW150]
gi|269988767|gb|EEZ95021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Legionella longbeachae D-4968]
gi|288857984|emb|CBJ11844.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Legionella longbeachae NSW150]
Length = 361
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 143/367 (38%), Positives = 198/367 (53%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV + +SGGVDSSVA LL G+ ++K W Q+D + F CP +D+ A+AVC+
Sbjct: 4 KVIIGMSGGVDSSVAAWLLQETGYQVEGLFMKNWEQDDKDGF---CPAAQDLADAQAVCN 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +PL + + EYW+NV +Y + EY GRTPNPDVLCN IKF AF+D ++ DY+
Sbjct: 61 QLRIPLHTTNFSKEYWQNVFTYFLSEYEKGRTPNPDVLCNKEIKFKAFLDHALTLGADYI 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYAK V L +KD+ KDQTYFL + L + +FP+G +K E+R
Sbjct: 121 ATGHYAKNVIDG-----DTGFLFKAKDRDKDQTYFLHAVDPKALGKTLFPIGDYTKTEIR 175
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+FA + L +KDS GICF+G+ +F F+ I G I E G LGKH G FY
Sbjct: 176 EFAQKLGLVTHAKKDSTGICFIGEKRFKSFLQEFILARPGEIKNTE-GKVLGKHDGLMFY 234
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G PWYVV+KD+ N ++V++ G + WL+
Sbjct: 235 TIGQRQGLGIGGLQNTSDDPWYVVDKDISTNTLYVAQGSQHPMLYAHGLVCGPIHWLADC 294
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
K R+ C MI EDG ++ V S + + GQ+ FY +
Sbjct: 295 KDRLPLTCYAKTRYRQAEQGC--MIS-PEDGNQH--YVMFSNPQRAVTPGQYIVFYDKNQ 349
Query: 374 CIGSGVI 380
C+G I
Sbjct: 350 CLGGATI 356
>gi|153875033|ref|ZP_02003007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Beggiatoa sp. PS]
gi|152068503|gb|EDN66993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Beggiatoa sp. PS]
Length = 359
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/373 (35%), Positives = 204/373 (54%), Gaps = 20/373 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+KV V +SGGVDSSVA LL G+ ++K W ++D EN+ C ED++ A+AVC
Sbjct: 1 MKVIVGMSGGVDSSVAALLLKKQGYEVQGLFMKNWEEDDTENY---CSAAEDVRDAQAVC 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
D +++PL V+ EYW NV ++ ++EY+ GRTPNPD+LCN IKF F++ +
Sbjct: 58 DTLEIPLHTVNFATEYWDNVFTHCLQEYQAGRTPNPDILCNREIKFKVFLEHALHLGGKA 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY ++ ++A + L D KDQ+YFL L Q+QL +FP+G + K +V
Sbjct: 118 IATGHYVRLGKNNAHYQ-----LLKGHDPNKDQSYFLYTLGQSQLAHSLFPIGELQKTQV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q L +KDS GICF+G+ F F++R + G +E G+ LG+H G +
Sbjct: 173 RQLAEQAGLATYAKKDSTGICFIGERPFKAFLSRFLPTQPGP-METPEGEVLGQHDGLMY 231
Query: 259 YTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + G PWYVV KD+ NN + V + + + L W+SG
Sbjct: 232 YTLGQRQGLNIGGQVGGSGEPWYVVAKDMPNNRLIVGQGHNHPLLFCDGLKAQQLHWISG 291
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ P K R+ C +I +++ V ++ + + GQ FYQ
Sbjct: 292 IAPSLPFSCSAKTRYRQTEQPC--VITALDN---ETCEVHFNQPQRAVTPGQSVVFYQND 346
Query: 373 RCIGSGVILESWD 385
C+G +I +++
Sbjct: 347 ECLGGAIIEMTYN 359
>gi|421079711|ref|ZP_15540649.1| TRNA-specific 2-thiouridylase mnmA [Pectobacterium wasabiae CFBP
3304]
gi|401705797|gb|EJS95982.1| TRNA-specific 2-thiouridylase mnmA [Pectobacterium wasabiae CFBP
3304]
Length = 368
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 204/374 (54%), Gaps = 28/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RHDVDGKSRLLR-GMDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + +L +KDS GICF+G+ KF++F+AR++ G IL + +G+H G +
Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLPAQPGPILSVDDNKPMGQHQGLMY 239
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN+++V++ + + RL G L
Sbjct: 240 HTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGH----EHPRLMSYGLIAQQLH 295
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C V G++ V+ E + GQ A F
Sbjct: 296 WVDRQPLTAELRCTVKTRYRQADIPCT-----VTPLGDDRITVRFDELVAAVTPGQSAVF 350
Query: 369 YQGTRCIGSGVILE 382
Y C+G G+I E
Sbjct: 351 YLDDVCLGGGIIEE 364
>gi|423483973|ref|ZP_17460663.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6X1-2]
gi|401141524|gb|EJQ49079.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6X1-2]
Length = 371
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 209/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SNKAKEKEFKCTAKCRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|433454563|ref|ZP_20413130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma sp. G5847]
gi|431933339|gb|ELK19932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma sp. G5847]
Length = 375
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 213/377 (56%), Gaps = 26/377 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------CPWEEDMK 72
KV V LSGGVDSSVA LL G+ +++ W + CP E+D
Sbjct: 4 KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINNDICPQEQDYL 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAV D++++ L + EYW V +Y IEEY+ RTPNPD+LCN IKF F++ AI
Sbjct: 64 DAKAVADKLNIKLHRIDFIKEYWDYVFTYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+++ D++A GHYAKV ++ +Y+ L + D KDQTYFL+ L+Q QL + +FPL
Sbjct: 124 NNLNADFIAMGHYAKVNYNKTTNQYE---LIKASDTNKDQTYFLAQLNQNQLSKTLFPLA 180
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++KE+VRK A + +L ++KDS GICF+G+ F++F+ +I G I++ +T LG
Sbjct: 181 NLTKEQVRKIALEQNLITANKKDSTGICFIGERHFTDFLQNYIPSQTGDIVDIKTNKVLG 240
Query: 252 KHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR----VG 305
+H G +YTIGQR+G+ L G P+YV KDV+ +++V S + L+ V
Sbjct: 241 QHIGIMYYTIGQRKGIHLSGMSEPYYVANKDVEKKILYVC----STSDESYLYSTSCIVN 296
Query: 306 SLKWLSGLPP--EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
+ W+ L + +S +C+ + + ++++ ++D N V+ ++ + + G
Sbjct: 297 DVNWILDLSKYVDNVSEFECQAKFRYRQDDNKVVVKKIDDN--NYKVI-FNKPLKAITIG 353
Query: 364 QFAAFYQGTRCIGSGVI 380
Q A FY C+G VI
Sbjct: 354 QQAVFYLNDICLGGAVI 370
>gi|257125929|ref|YP_003164043.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Leptotrichia buccalis C-1013-b]
gi|257049868|gb|ACV39052.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Leptotrichia buccalis C-1013-b]
Length = 364
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 138/367 (37%), Positives = 209/367 (56%), Gaps = 19/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV + +SGGVDSSVA LL G+ ++K W ++D EN C EED K AV +
Sbjct: 6 KVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKD-EN--GVCMAEEDYKDVIAVAE 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D + DYV
Sbjct: 63 QLGIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFRAFLDYAMKIGADYV 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+++H D E K ++L D KDQTYFL L+Q QL++++FPLG +K ++R
Sbjct: 123 ATGHYARIIHEEKDGEMKSTMLR-GIDDNKDQTYFLCQLNQEQLEKVLFPLGEYTKPKIR 181
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A +++L +KDS GICF+G+ F++F+++++ G I+ + G LG H G +Y
Sbjct: 182 EIAEKYNLATAKKKDSTGICFIGERDFNKFLSQYLPAKGGNIVNTQ-GKVLGHHNGLMYY 240
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQR+G+ + G PW+VV+KD++ N + V++ S L+ G +
Sbjct: 241 TIGQRKGIGIGNTKEGTGEPWFVVDKDLEKNELIVTQGDNSV-----LYSKGLIATDFNF 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
E L+C V+ + +I + EN V +E + + GQ Y G
Sbjct: 296 INEVQFPLECTVKFRYRQKDTKAVISKLN---ENEYEVIFNEPQKAVTLGQIVVAYDGEV 352
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 353 CLGGGII 359
>gi|398836540|ref|ZP_10593874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Herbaspirillum sp. YR522]
gi|398211653|gb|EJM98270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Herbaspirillum sp. YR522]
Length = 368
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 141/374 (37%), Positives = 196/374 (52%), Gaps = 30/374 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSV+ LL G+ ++K W +D + C ED A +V D
Sbjct: 5 RVVIGMSGGVDSSVSAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTREDWIDAVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
V V +E V+ EY V + + EY+ GRTPNPDVLCN IKF AF+D + D++
Sbjct: 62 VVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMKLGADFI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V ++A EL K D KDQ+YFL L+QAQL R +FPLG + K E
Sbjct: 122 ATGHYARVRQNAAGH------FELLKALDASKDQSYFLHRLNQAQLSRTVFPLGELHKTE 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + LPN +KDS GICF+G+ F EF+ R++ G I AE GD +G+H G
Sbjct: 176 VRRIAEELKLPNARKKDSTGICFIGERPFREFLNRYLSYQPGPIKTAE-GDTVGQHVGLS 234
Query: 258 FYTIGQRQGLRLPG-----------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
FYT+GQR+G+ + G WYV KDV N +++ + + + G
Sbjct: 235 FYTLGQRKGIGIGGIKAHQNAQGTSDAWYVARKDVDANTLYIVQGHDHPWLLSPSLQAGQ 294
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W++G PP L K R+ C GGE ++ + GQ A
Sbjct: 295 LSWIAGQPPAA-GALSAKTRYRQSDVACAFT------GGEGQFSLEFDTPQWAVTPGQSA 347
Query: 367 AFYQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 348 VLYDGEICLGGGII 361
>gi|212696912|ref|ZP_03305040.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM
7454]
gi|212676202|gb|EEB35809.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM
7454]
Length = 369
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 218/368 (59%), Gaps = 27/368 (7%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSVA LL G+ + ++K W +ED EN C E D + A VC+Q+ +P
Sbjct: 15 VSGGVDSSVAALLLKEEGYDVSGIFMKNWDEED-EN--GVCTAEVDYEDAVKVCNQIGIP 71
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
++ EY+ V SY ++EY+ GRTPNPD++CN IKF AF+D + DY+A+GHY
Sbjct: 72 YYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADYLATGHY 131
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
A+V D+E + + D KDQTYFLS LSQ Q+K ++FP+G + K+EVRK A +
Sbjct: 132 ARV-----DREDGETKMLRGIDSNKDQTYFLSQLSQDQIKDVLFPVGNLDKKEVRKIAKE 186
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
+L D+KDS GICF+G+ F+EF++ ++ EG I++ + G+ +GKH+G ++TIGQR
Sbjct: 187 NNLATADKKDSTGICFIGERNFNEFLSNYLPAKEGNIVDTD-GNVMGKHYGLMYHTIGQR 245
Query: 265 QGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR---VGS-LKWLSGLPPEEI 318
+GL + G W+V KD++ N + V + +LF +GS L +S ++
Sbjct: 246 RGLGIGGEGEAWFVCGKDLEKNELIVCQG----KNNEKLFSNRLIGSNLSSISAKGLKKE 301
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSED-DQGLAAGQFAAFYQGTRCIGS 377
CK R+ N ++ I ++DG V+++ D + + GQ A FY G C+GS
Sbjct: 302 FDCTCKFRYRQKDINSHVKI--LDDG-----KVEITYDKTKAVTPGQAAVFYDGEVCLGS 354
Query: 378 GVILESWD 385
+I E ++
Sbjct: 355 CIIDEVYN 362
>gi|419310812|ref|ZP_13852682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC11E]
gi|378159410|gb|EHX20414.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC11E]
Length = 368
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTATADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ + F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSSVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|423615263|ref|ZP_17591097.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD115]
gi|401260942|gb|EJR67109.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD115]
Length = 371
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 209/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLLKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K+N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKDNILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E + K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SNKAKETEFKCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|423558025|ref|ZP_17534327.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MC67]
gi|401191293|gb|EJQ98315.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MC67]
Length = 371
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDANGV---CTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SNKAKEKEFTCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|388600095|ref|ZP_10158491.1| tRNA-specific 2-thiouridylase MnmA [Vibrio campbellii DS40M4]
Length = 374
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP ++ D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGEKPE-MQRGLDSNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ R++ G I E G+ +G+H G +
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQGLMY 240
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD++ NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 301 DREPIRDVMKCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYK 355
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 356 DDVCLGGGII 365
>gi|375091190|ref|ZP_09737488.1| tRNA-specific 2-thiouridylase mnmA [Helcococcus kunzii ATCC 51366]
gi|374564361|gb|EHR35659.1| tRNA-specific 2-thiouridylase mnmA [Helcococcus kunzii ATCC 51366]
Length = 370
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 219/376 (58%), Gaps = 25/376 (6%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
K +KV V +SGGVDSSVA LL G+ T ++K W D F C EED K A
Sbjct: 5 NKDIKVVVGISGGVDSSVAALLLKQQGYDVTGVFMKNWDDTDENGF---CTAEEDFKDAV 61
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
AVC+++ +P ++ +EY+ V Y ++EY+ GRTPNPD++CN IKF AF+D +
Sbjct: 62 AVCNEIGIPYYSINFEEEYYNRVFKYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKDLG 121
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
DY+A+GHYA++ + + +E+ + D KDQTYFLS LSQ Q+K ++FP+G +
Sbjct: 122 ADYLATGHYARIRRN------EDGSVEMLRGLDDNKDQTYFLSQLSQEQIKDVMFPIGEL 175
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K EVR+ A + +L +KDS GICF+G+ F+EF++ ++ G +++ ++ + LGKH
Sbjct: 176 QKSEVRELAKKHNLVTATKKDSTGICFIGERNFNEFLSHYLPAKPGDMVDIDSAEVLGKH 235
Query: 254 WGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLF--RVGSLKW 309
G ++TIGQR+GL + G PW+V KD++ N + + + + D LF ++ + ++
Sbjct: 236 QGLMYHTIGQRRGLGIGGDGEPWFVCGKDLEKNQLLICQGSDNED----LFSNKLYASEF 291
Query: 310 LSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD-QGLAAGQFAAF 368
S L E ++C + + + + ++D V+++ D+ + + GQ A F
Sbjct: 292 QSNLSNFEKKDMECVAKFRYRQKDIPVKVHFLDDDK-----VEVTYDNIKSVTPGQAAVF 346
Query: 369 YQGTRCIGSGVILESW 384
Y G CIGS +I + +
Sbjct: 347 YDGEVCIGSAIIDDVY 362
>gi|387813961|ref|YP_005429444.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381338974|emb|CCG95021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 378
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 136/376 (36%), Positives = 202/376 (53%), Gaps = 19/376 (5%)
Query: 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82
V +SGGVDSSVA LL G+ ++K W ++D + C D+ A+AV D +
Sbjct: 3 VGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTEY---CTAMTDLADAQAVADAIG 59
Query: 83 VPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASG 142
+ L EYW V + + EY GRTPNPD+LCN +KF AF+D ++ DY+A+G
Sbjct: 60 IKLHTASFAAEYWDRVFEHFLSEYSAGRTPNPDILCNKEVKFRAFLDYAVTLGADYIATG 119
Query: 143 HYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFA 202
HY + D K +L+ D KDQ+YFL +S ++ R +FP+G + K EVR+ A
Sbjct: 120 HYTR-QRPLNDGSGKAQLLK-GLDPNKDQSYFLHAVSGQRIARTLFPVGELEKPEVRRIA 177
Query: 203 TQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIG 262
+ D+KDS GICF+G+ KF++F+ +++ G I E G +GKH G ++TIG
Sbjct: 178 EEQGFVTHDKKDSTGICFIGERKFTDFLKQYLPAQPGNI-ETPDGTVIGKHQGLMYHTIG 236
Query: 263 QRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
QRQGL + G PWYV EKD+ NV+ + + R G + W++G PP
Sbjct: 237 QRQGLGIGGLAEFGDDPWYVAEKDLNRNVLIAVQGKHHPLLFSRGLVSGPVDWVAGEPPA 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ R + K R+ +C + V DGG + + + + GQ FYQG C+G
Sbjct: 297 QKFRCKAKTRYRQPDQDCEVT---VIDGGVKVI---FDDAQRAVTPGQSVVFYQGEVCLG 350
Query: 377 SGVILESW-DDQGFPV 391
GVI ++W D++ P
Sbjct: 351 GGVIEQTWRDNEALPA 366
>gi|407792892|ref|ZP_11139928.1| tRNA-specific 2-thiouridylase MnmA [Idiomarina xiamenensis 10-D-4]
gi|407217150|gb|EKE86986.1| tRNA-specific 2-thiouridylase MnmA [Idiomarina xiamenensis 10-D-4]
Length = 407
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 207/383 (54%), Gaps = 29/383 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G ++K W ++D + C D+ A+ VCD
Sbjct: 35 KVIVGMSGGVDSSVSAYLLQQQGFQVEGLFMKNWEEDDDTEY---CSAAADLADAQQVCD 91
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV Y ++EYR GRTPNPD++CN IKF AF++ A+ + DY
Sbjct: 92 KLGIELHTVNFAAEYWDNVFEYFLDEYRAGRTPNPDIMCNKEIKFKAFLEFALEVHDADY 151
Query: 139 VASGHYAK----VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
+A+GHY + H++ DQ +L D KDQ+YFL LS AQL R +FP+G +
Sbjct: 152 IATGHYVQRSSASAHANPDQADTVQMLR-GLDGNKDQSYFLYTLSSAQLARTLFPVGHLE 210
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K VR+ A L D+KDS GICF+G+ KFS+F+ R + G I + G+ LG+H
Sbjct: 211 KPTVREIAEAQGLVTADKKDSTGICFIGERKFSDFLQRFLPAQPGPIKSVD-GELLGEHQ 269
Query: 255 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLK 308
G ++T+GQR+GL + G WYVV+KDV+NNV+ V++ + V L
Sbjct: 270 GLMYHTLGQRKGLHIGGRADSNGEAWYVVDKDVQNNVLLVAQGHDHPRLYSHGMVVNQLH 329
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVE----DGGENIAVVQLSEDDQGLAAGQ 364
W++ P + ++L K R+ C + + + D E +A V GQ
Sbjct: 330 WVAAHGPADNAQLTVKTRYRQADIGCRVQRLNTQQWQVDFAEPVAAV---------TPGQ 380
Query: 365 FAAFYQGTRCIGSGVILESWDDQ 387
A FY G C+G G+I + D
Sbjct: 381 SAVFYSGDVCLGGGIIEQRCSDH 403
>gi|417320174|ref|ZP_12106720.1| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus 10329]
gi|328473137|gb|EGF43985.1| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus 10329]
Length = 374
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 204/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A +E DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGEKPQMLR-GLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF+EF+ R++ G I E G+ +GKH G +
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGKHQGLMY 240
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD+ NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 301 DREPIRDVMKCTVKTRYRQQDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYK 355
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 356 DDVCLGGGII 365
>gi|444920167|ref|ZP_21240010.1| tRNA-specific 2-thiouridylase MnmA [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444508486|gb|ELV08655.1| tRNA-specific 2-thiouridylase MnmA [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 365
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 211/372 (56%), Gaps = 23/372 (6%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
KG +V V +SGGVDSSVA LL G ++K W +++FE + C EED+K A+A
Sbjct: 7 KGKRVIVGMSGGVDSSVAALLLKEQGADVHGVFMKNW-EDNFETGY--CSAEEDVKDAQA 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VCD + +PL V+ Y + V +Y +E + G TPNPDVLCN IKF AF+D + M
Sbjct: 64 VCDTLGIPLHKVNFVKNYKERVFAYFLETLKLGLTPNPDVLCNKEIKFKAFLDYANEMGA 123
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA+ H + Q Y L D KDQ+YFL LSQAQ+K +FP+G + K
Sbjct: 124 DYIATGHYAR-THRADGQTYLLKGL----DNNKDQSYFLHLLSQAQIKNALFPVGELEKP 178
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
VR+ A + L D+KDS GICF+G+ F+EF+ ++I G ++ + G+ +G+H G
Sbjct: 179 VVRELALKHKLITYDKKDSTGICFIGERDFNEFIGQYIASKPGKMITVD-GEVIGEHQGL 237
Query: 257 WFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
FYTIGQR+GL + G PW+VVEK++++N + V++ + K L + W+
Sbjct: 238 SFYTIGQRKGLHIGGVKNSTGEPWFVVEKNLEDNTLIVAQGEHPALYKESL-TARDVHWI 296
Query: 311 -SGLPPEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
+ L I+ L K+R+ C IE ++DG V + + + GQ F
Sbjct: 297 NTNLDLNAINENLTAKIRYRQKDEACR--IEFLDDGR---LFVAFDDPQRAVTPGQSIVF 351
Query: 369 YQGTRCIGSGVI 380
Y G C+G +I
Sbjct: 352 YHGDVCLGGAII 363
>gi|345023320|ref|ZP_08786933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase
[Ornithinibacillus scapharcae TW25]
Length = 370
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 136/375 (36%), Positives = 205/375 (54%), Gaps = 26/375 (6%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M K ++V V +SGGVDSSVA LL G+ ++K W +D + F C ED
Sbjct: 1 MKENKDIRVVVGMSGGVDSSVAALLLKEQGYDVVGIFMKNW--DDTDEFGV-CTATEDFD 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+D+P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVVRVCNQLDIPYYSVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA+V ++ E V D KDQTYFL+ L+ L++++FPLG
Sbjct: 118 DLGADYLATGHYAQVRENNGKYEMLRGV-----DSNKDQTYFLNQLTSDILEKVMFPLGH 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETGD 248
+ K +VR+ A + L +KDS GICF+G+ F EF++ ++ GEM+ + G+
Sbjct: 173 MPKSKVREIAKEHGLATATKKDSTGICFIGERNFKEFLSEYLPAQPGEMQTL-----NGE 227
Query: 249 FLGKHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
GKH G +YTIGQRQGL + G PW+VV K++K N+++V + Y +
Sbjct: 228 VKGKHDGLMYYTIGQRQGLGIGGAGDPWFVVGKNLKENILYVEQGYSNETLYSEELIATD 287
Query: 307 LKWLSGLPPEEISR-LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
L W++ P++I+ C + + + ++ +DG V E + + GQ
Sbjct: 288 LNWIN---PQDITESFTCTAKFRYRQDDSGVTVKLQDDG---TVRVIFDERQRAITPGQA 341
Query: 366 AAFYQGTRCIGSGVI 380
FY G C+G G I
Sbjct: 342 VVFYDGDVCLGGGTI 356
>gi|209695634|ref|YP_002263563.1| tRNA-specific 2-thiouridylase MnmA [Aliivibrio salmonicida LFI1238]
gi|208009586|emb|CAQ79882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Aliivibrio salmonicida LFI1238]
Length = 374
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 208/375 (55%), Gaps = 22/375 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD+LCN IKF AF++ A ++ D+
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADF 124
Query: 139 VASGHYAKVVHSSAD---QEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A GHY + +A+ KP +L D KDQ+YFL LS Q+ R +FP+G + K
Sbjct: 125 IAMGHYVRRTFPTAEDIANGAKPQMLR-GLDSNKDQSYFLYTLSSEQVARSLFPVGDLEK 183
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + DL +KDS GICF+G+ KF+EF+ +++ G I E G +G+H G
Sbjct: 184 PEVRRIAQEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGNI-ETPEGKVIGQHQG 242
Query: 256 FWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
++T+GQR+GL + G PW+V EKD+K NV+ + + K + L
Sbjct: 243 LMYHTLGQRKGLHIGGSKGGGGNEDPWFVGEKDLKRNVLIAVQGHDHPLLKSQGLLASQL 302
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+ + K R+ C ++ ++D ENI V+ +E + GQ A
Sbjct: 303 DWVDRTAIKAPLSCTVKTRYRQTDIPCTII--PIDD--ENIKVI-FNEPQIAVTPGQSAV 357
Query: 368 FYQGTRCIGSGVILE 382
FY G C+G G+I E
Sbjct: 358 FYSGEICLGGGIIEE 372
>gi|404413591|ref|YP_006699178.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC7179]
gi|404239290|emb|CBY60691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC7179]
Length = 371
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 201/368 (54%), Gaps = 16/368 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 LATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGAMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ F +F++ ++ G + + G+ LGKH G +
Sbjct: 180 REIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLD-GEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
YTIGQR GL + G PW+VV KD+K NV+FV + ++ + + + E
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTN--AE 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ ++C + + + + EDG A V ++ + + GQ FY G C+G
Sbjct: 297 KPKTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDVCLG 353
Query: 377 SGVILESW 384
G I W
Sbjct: 354 GGTIDTVW 361
>gi|407071843|ref|ZP_11102681.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cyclitrophicus ZF14]
Length = 378
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 203/373 (54%), Gaps = 22/373 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAK---VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A GHY + D KP +L D KDQ+YFL LS Q+ R +FP+G + K
Sbjct: 129 IAMGHYVRRTFPTQEELDAGVKPEMLR-GLDSNKDQSYFLYTLSSDQVARSLFPVGELEK 187
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + DL +KDS GICF+G+ KF+EF+ +++ G I E G +G+H G
Sbjct: 188 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGNI-ETPEGQVIGQHQG 246
Query: 256 FWFYTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
++T+GQR+GL + G PW+V EKD+K NV+ + K L
Sbjct: 247 LMYHTLGQRKGLHIGGTKGGGGNEEPWFVGEKDLKRNVLIAVQGKDHPLLKSEGLIASQL 306
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ P E+ K R+ C ++ ++D ENI V+ E + GQ A
Sbjct: 307 HWVNRTPITEVMTCTVKTRYRQTDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAV 361
Query: 368 FYQGTRCIGSGVI 380
FY C+G G+I
Sbjct: 362 FYLDDVCLGGGII 374
>gi|269960819|ref|ZP_06175190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio harveyi 1DA3]
gi|269834483|gb|EEZ88571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio harveyi 1DA3]
Length = 380
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 207/374 (55%), Gaps = 23/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSS----ADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
+A GHY + +++ KP +L D KDQ+YFL LS Q+ R +FP+G +
Sbjct: 125 IAMGHYVRRSFPENALPGEEQEKPQMLR-GLDGNKDQSYFLYTLSNEQIARSLFPVGDLE 183
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR+ A + DL +KDS GICF+G+ KF+EF+ R++ G I E G+ +G+H
Sbjct: 184 KPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQ 242
Query: 255 GFWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
G ++T+GQR+GL + G PW+V EKD++ NV+ + K
Sbjct: 243 GLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQ 302
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P ++ + K R+ C ++ ++D ENI V+ E + GQ A
Sbjct: 303 LHWVDREPIRDVMKCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSA 357
Query: 367 AFYQGTRCIGSGVI 380
FY+ C+G G+I
Sbjct: 358 VFYKDDVCLGGGII 371
>gi|289434792|ref|YP_003464664.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419114|ref|ZP_16496069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri FSL N1-067]
gi|289171036|emb|CBH27578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313633159|gb|EFS00043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri FSL N1-067]
Length = 371
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 204/368 (55%), Gaps = 16/368 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV LL G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ D+
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QL++++FPLG + K+EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQEQLQKVMFPLGGMEKKEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ AT+ L ++KDS GICF+G+ F +F++ ++ G ++ G+ LGKH G +
Sbjct: 180 REIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGK-MQTLDGEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
YTIGQR GL + G PW+V KD+K N++FV + ++ + + + E
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDISFTTN--AE 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ ++C + + + + H+ D +N A V +E + + GQ FY G C+G
Sbjct: 297 KPKTIECTAKFRYRQTDTKVTV-HLRD--DNTAEVVFAEPVRAITPGQAVVFYDGDICLG 353
Query: 377 SGVILESW 384
G I W
Sbjct: 354 GGTIDTVW 361
>gi|315282423|ref|ZP_07870840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria marthii FSL S4-120]
gi|313613928|gb|EFR87655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria marthii FSL S4-120]
Length = 371
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 201/368 (54%), Gaps = 16/368 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ F +F++ ++ G + + G+ LGKH G +
Sbjct: 180 REIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLD-GEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
YTIGQR GL + G PW+VV KD+K NV+FV + ++ + + + E
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHETLYSDSLIATDISFTTN--AE 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ ++C + + + + EDG A V ++ + + GQ FY G C+G
Sbjct: 297 KPKTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDICLG 353
Query: 377 SGVILESW 384
G I W
Sbjct: 354 GGTIDTVW 361
>gi|110834136|ref|YP_692995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alcanivorax borkumensis SK2]
gi|123149502|sp|Q0VQ25.1|MNMA_ALCBS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|110647247|emb|CAL16723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alcanivorax borkumensis SK2]
Length = 364
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 199/370 (53%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA L AG+ ++K W ++D ++ C ED+ A V
Sbjct: 9 RVIVGMSGGVDSSVAAARLIDAGYQVEGLFMKNWNEDDGTDY---CTAREDLLDAMQVAG 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + L + ++YW V ++ + EY+ GRTPNPD+LCN IKF AF+D ++ DY+
Sbjct: 66 VLGIELHTANFAEQYWDRVFAHFLAEYKAGRTPNPDILCNKEIKFQAFLDHAITLGADYI 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY++V H+ K +L + D KDQTYFL + + R +FPLG + K EVR
Sbjct: 126 ATGHYSQVSHTG-----KAKLLR-AVDTNKDQTYFLHAVDYQKFDRTLFPLGDLEKPEVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q N +KDS GICF+G+ +F +F+ +++ G I E + G+ +G+H G +Y
Sbjct: 180 RIAEQKGFDNHKKKDSTGICFIGERRFKDFLEQYLPAQPGSI-EDDHGNVIGQHDGLMYY 238
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + G PWYV +KD++ NV+ + R+ ++W++
Sbjct: 239 TLGQRQGLGIGGLASASEAPWYVAKKDLERNVLIAVQGTDHPLLYSRVLNSAPMQWVALE 298
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P +RL K R+ C V D GE V E + + GQ FY G
Sbjct: 299 APALPARLTAKTRYRQPDQGCT-----VSDAGEGRVTVTFDEPQRAVTPGQSVVFYDGPV 353
Query: 374 CIGSGVILES 383
C+G VI E+
Sbjct: 354 CLGGAVIEET 363
>gi|424032935|ref|ZP_17772351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HENC-01]
gi|408875296|gb|EKM14447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio cholerae HENC-01]
Length = 380
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 207/374 (55%), Gaps = 23/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSS----ADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
+A GHY + +++ KP +L D KDQ+YFL LS Q+ R +FP+G +
Sbjct: 125 IAMGHYVRRSFPEDALPGEEQEKPQMLR-GLDGNKDQSYFLYTLSHEQIARSLFPVGDLE 183
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR+ A + DL +KDS GICF+G+ KF+EF+ R++ G I E G+ +G+H
Sbjct: 184 KPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQ 242
Query: 255 GFWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
G ++T+GQR+GL + G PW+V EKD++ NV+ + K
Sbjct: 243 GLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQ 302
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P ++ + K R+ C ++ ++D ENI V+ E + GQ A
Sbjct: 303 LHWVDREPIRDVMKCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSA 357
Query: 367 AFYQGTRCIGSGVI 380
FY+ C+G G+I
Sbjct: 358 VFYKDDVCLGGGII 371
>gi|374619862|ref|ZP_09692396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium HIMB55]
gi|374303089|gb|EHQ57273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium HIMB55]
Length = 371
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/374 (35%), Positives = 202/374 (54%), Gaps = 21/374 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M + KV V +SGGVDSSV+ LL G++ ++K W ++D + C +ED+
Sbjct: 1 MSYNNATKVIVGMSGGVDSSVSALLLKQQGYTVEGLFMKNWDEDDGTEY---CTAKEDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
A+ V D + + L + EYW NV + +EEY GRTPNPD+LCN IKF AF+D
Sbjct: 58 DAQGVADALGIKLHAANFAAEYWDNVFEHFLEEYGAGRTPNPDILCNKEIKFRAFLDYAK 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ D +A+GHY K + + K ++++ +D KDQ+YFL + L+ +FP+G
Sbjct: 118 ALGADKIATGHYVK----TGTHDDKATLVK-GRDAGKDQSYFLHQVEHTALQDTLFPIGE 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR A++ + +KDS GICF+G+ +FS+F+A+++ + G I + G +G+
Sbjct: 173 LEKTEVRSIASEHNFGTATKKDSTGICFIGERRFSDFLAQYLKKNPGPIKSVD-GAVIGE 231
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++TIGQRQGL + G PWYVV+K+V+ N ++V + + G
Sbjct: 232 HQGLMYHTIGQRQGLGIGGLKNASEAPWYVVDKEVETNTLWVCQGNDNPALFASTLHTGD 291
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+SG PE KVR+ C + + N VV + + GQ
Sbjct: 292 LFWISGAAPEVPFTCNAKVRYRQADQACEVSRQG------NGYVVHFDNPQRAITPGQSL 345
Query: 367 AFYQGTRCIGSGVI 380
YQG C+G GVI
Sbjct: 346 VLYQGEVCLGGGVI 359
>gi|410630453|ref|ZP_11341142.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola arctica BSs20135]
gi|410149895|dbj|GAC18009.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola arctica BSs20135]
Length = 376
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/373 (35%), Positives = 208/373 (55%), Gaps = 29/373 (7%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K A+AV
Sbjct: 17 IKVVVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDNDEY---CAAADDLKDAQAVS 73
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFD 137
D++ + L ++ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A + D
Sbjct: 74 DKLGITLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAEELNAD 133
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
Y+A+GHY + + + + + + D KDQ+YFL L + + + +FP+G + K +
Sbjct: 134 YIATGHYVQRSNETGNWQMLRGL-----DGNKDQSYFLYTLGEQHIAQTLFPIGHLEKPK 188
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + DL D+KDS GICF+G+ KF +F+A+++ G I AE G +GKH G
Sbjct: 189 VREIALEQDLVTHDKKDSTGICFIGERKFKDFLAQYLPAQPGEIETAE-GKIIGKHEGLM 247
Query: 258 FYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SL 307
++T+GQR+GL + G PWYVV+KD++ NV+ V + RL+ G L
Sbjct: 248 YHTLGQRKGLLIGGMKEYGEEPWYVVDKDIERNVLIVGQGA----NHPRLYSTGLLANQL 303
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+ P++ + K R+ C I DG +V+ E + + GQ A
Sbjct: 304 HWVDRKGPQQAIKCTVKTRYRQQDIPCQ--ITPNTDGS---LLVKFDEPQKAVTPGQSAV 358
Query: 368 FYQGTRCIGSGVI 380
FYQ C+G G+I
Sbjct: 359 FYQNEICLGGGII 371
>gi|415886865|ref|ZP_11548608.1| tRNA-specific 2-thiouridylase MnmA [Bacillus methanolicus MGA3]
gi|387585516|gb|EIJ77841.1| tRNA-specific 2-thiouridylase MnmA [Bacillus methanolicus MGA3]
Length = 370
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/373 (36%), Positives = 208/373 (55%), Gaps = 34/373 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W D +N C ED + K V +
Sbjct: 6 RVVVGMSGGVDSSVAAYLLKKEGYEVIGVFMKNW---DDKNDDGVCTATEDFEDVKIVSN 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EYW +V +Y +EE + GRTPNPDVLCN+ IKF AF+D S++ DYV
Sbjct: 63 QLGIPYYSVNFEKEYWDHVFTYFMEELKLGRTPNPDVLCNSEIKFKAFIDFALSLDADYV 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ + + L KD KDQ+YFLS L+ QL ++IFPLG ++K+EVR
Sbjct: 123 ATGHYARINRKNGE-----VTLLRGKDSNKDQSYFLSQLTGEQLSKVIFPLGELTKDEVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A + +L ++KDS GICF+G+ F F+ + G I + G+ LG+H G +Y
Sbjct: 178 KIANEINLSTANKKDSTGICFIGERNFKSFLKNFLPAQPGDIRSID-GEVLGRHDGLMYY 236
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
TIGQR+GL + G PW+VV+KD++NN++ V++ + + +G+
Sbjct: 237 TIGQRKGLGIGGKGAPEPWFVVDKDLENNILIVAQG-----------KDHPALYSNGIIA 285
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDG--------GENIAVVQLSEDDQGLAAGQFAA 367
IS + + P ++C + ++ + A+V+ + + + GQ A
Sbjct: 286 ANISFINGD--YSPRTFSCTAKFRYRQEDQKVKVHVRTDKTALVEFEQPIKAVTPGQVAV 343
Query: 368 FYQGTRCIGSGVI 380
FY C+GSG+I
Sbjct: 344 FYDQDVCLGSGII 356
>gi|85059063|ref|YP_454765.1| tRNA-specific 2-thiouridylase MnmA [Sodalis glossinidius str.
'morsitans']
gi|123519587|sp|Q2NU15.1|MNMA_SODGM RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|84779583|dbj|BAE74360.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Sodalis glossinidius str. 'morsitans']
Length = 369
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 200/368 (54%), Gaps = 21/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYRVEGLFMKNWEEDDNEEY---CTAASDLADARAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
+ + L V+ EYW NV ++ + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 TLGIALHTVNFAAEYWDNVFAHFLAEYQVGRTPNPDILCNKEIKFKAFLEFADDDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L AQL R +FP+G ++K EV
Sbjct: 125 IATGHYVR----RADVNGKSRLLR-GLDDNKDQSYFLYTLGHAQLARCLFPIGELAKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAADLGLATAAKKDSTGICFIGERKFRDFLGRYLPVQPGAIVSVD-GQEVGRHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVV+KD+ +N + V++ + G L W+
Sbjct: 239 HTLGQRKGLGIGGTRDGSEDPWYVVDKDLDHNRLIVAQGHQHPRLMSTGLTAGQLHWVER 298
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K+R+ C ++ DG V + + GQ A FY
Sbjct: 299 EPLTEALRCTVKIRYRQPDIAC--LVTPQADGRLQ---VTFDQPVTAVTPGQSAVFYLAE 353
Query: 373 RCIGSGVI 380
RC+G G+I
Sbjct: 354 RCLGGGII 361
>gi|218289827|ref|ZP_03494027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alicyclobacillus acidocaldarius LAA1]
gi|218240118|gb|EED07303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alicyclobacillus acidocaldarius LAA1]
Length = 365
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 201/367 (54%), Gaps = 19/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL AG+ ++K W + D EN C E+D + + VC+
Sbjct: 4 RVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDETD-EN--GACTAEQDFEDVRRVCE 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EY + V + +EE+R GRTPNPDVLCN IKF + + DY+
Sbjct: 61 QIGIPYYGVNFEREYEERVFQHFLEEFRRGRTPNPDVLCNREIKFKELLACALDLGADYL 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V E L +DK KDQTYFL L+QA L+R +FP+G ++K EVR
Sbjct: 121 ATGHYAQVRQL----EDGSVALVRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A L +KDS GICF+G+ F F+ +++ G+I + + G LG+H G +Y
Sbjct: 177 QIARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLPAQPGLIEDVD-GRVLGEHDGLMYY 235
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQR+GLRL G PW+VV+KD+ NV+ V++ + R ++ +++
Sbjct: 236 TIGQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALSADTVSFVAER 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP E R K R Y + VE GE+ V E + + GQ FY G
Sbjct: 296 PPAERFRCTAKFR-----YRQDDQPVKVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGDI 350
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 351 CLGGGII 357
>gi|329909731|ref|ZP_08275115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Oxalobacteraceae bacterium IMCC9480]
gi|327546403|gb|EGF31411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Oxalobacteraceae bacterium IMCC9480]
Length = 369
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/379 (37%), Positives = 204/379 (53%), Gaps = 31/379 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV + LSGGVDSSV+ LL G+ ++K W +D + C +D A +V D
Sbjct: 5 KVVIGLSGGVDSSVSAALLKEQGYEVIGLFMKNWEDDDDAEY---CSTRQDWIDAVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ + EY V + + EY+ GRTPNPDVLCN IKF AF+D + D +
Sbjct: 62 VLGIDIEAVNFSAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMHLGADLI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V S++D EL K D KDQ+YFL L+QAQL + +FPLG I K E
Sbjct: 122 ATGHYARVRESASD----AGRFELLKAIDHTKDQSYFLHRLNQAQLSKTLFPLGEIRKTE 177
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VRK A Q LPN +KDS GICF+G+ F EF+ R++ G + E GD +G+H G
Sbjct: 178 VRKMAEQLGLPNAAKKDSTGICFIGERPFREFLNRYLSYQPGPMKTPE-GDTIGEHVGLS 236
Query: 258 FYTIGQRQGLRLPG-----------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
FYT+GQR+G+ + G WYV KD+ +N ++V + +
Sbjct: 237 FYTLGQRKGIGIGGIKAHQNANGSSDAWYVARKDIASNTLYVVQGHDHPWLLSASLEADQ 296
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQ--GLAAGQ 364
L W++G PP++ +L K R+ C++ G + +QL+ D + GQ
Sbjct: 297 LSWIAGAPPDD-GQLSAKTRYRQADVPCHV-------GMVDAQRLQLAFDASQWAVTPGQ 348
Query: 365 FAAFYQGTRCIGSGVILES 383
A Y+G C+G G+I S
Sbjct: 349 SAVLYRGDVCLGGGIIASS 367
>gi|254514300|ref|ZP_05126361.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium NOR5-3]
gi|219676543|gb|EED32908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium NOR5-3]
Length = 368
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/374 (37%), Positives = 206/374 (55%), Gaps = 29/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA +L G+ ++K W ++D + C + D A+AV D
Sbjct: 6 KVIVGMSGGVDSSVAALMLLEQGYHVEGLFMKNWDEDDGTEY---CTAKADFADAQAVAD 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D + D +
Sbjct: 63 KLQITLHSANFAAEYWDNVFEHFLAEYQSGRTPNPDILCNREIKFRAFLDYALELGADSI 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ + +P++L+ D KDQ+YFL + A+L + +FPLG I+K EVR
Sbjct: 123 ATGHYAR----RGVMQGRPALLK-GLDANKDQSYFLHAVGHAELAKTLFPLGEIAKPEVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A DL D+KDS GICF+G+ +F +F+ R++ GVI E GD +G+H G ++
Sbjct: 178 ARAAAADLTTHDKKDSTGICFIGERRFKDFLQRYLPAQPGVIKTLE-GDTIGEHSGLMYH 236
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR----VGSLKW 309
TIGQRQGL + G PWYV KD+ NNV++V + + LF L W
Sbjct: 237 TIGQRQGLGIGGLATHNEAPWYVAGKDLGNNVLWVVQG----NDHPALFSDELWAQELFW 292
Query: 310 LSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
+SG P R + KVR+ +C ++ + ++ V + + + GQ FY
Sbjct: 293 ISGEAPSLPLRCKAKVRYRQPDQDCTVIQD------KDHYRVSFDQPQRAITPGQSVVFY 346
Query: 370 QGTRCIGSGVILES 383
Q C+G GVI ++
Sbjct: 347 QDNACLGGGVITDT 360
>gi|429333322|ref|ZP_19214019.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida CSV86]
gi|428761901|gb|EKX84118.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida CSV86]
Length = 374
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 210/387 (54%), Gaps = 25/387 (6%)
Query: 11 CSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEED 70
++P + +V V +SGGVDSSV+ LL G+ ++K W ++D + C ED
Sbjct: 4 TALPAPEKTRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTEY---CTARED 60
Query: 71 MKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDA 130
+ A+AVCD++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF+D
Sbjct: 61 LADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDY 120
Query: 131 ISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPL 190
S+ D +A+GHY + D + + +L+ D KDQ+YFL + Q+ R +FP+
Sbjct: 121 ALSLGADMIATGHYVR----RRDIDGRTELLK-GLDPNKDQSYFLHAVGGEQIARTLFPV 175
Query: 191 GCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250
G + K EVR A + L +KDS GICF+G+ +FS+F+ +++ G I E G+ +
Sbjct: 176 GELEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGEIQTTE-GEVI 234
Query: 251 GKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFR 303
G+H G ++TIGQRQGL + G PWYV+EKD+ NV+ V + N + + R L
Sbjct: 235 GRHHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLEKDLARNVLVVGQGNEHPWLFSRALL- 293
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
+ W++ + RL KVR+ +C L E G V E + + G
Sbjct: 294 ASEIFWVNPIDLSAPRRLTAKVRYRQSDQDCTL-----ERTGTGYRAV-FDEPQRAVTPG 347
Query: 364 QFAAFYQGTRCIGSGV--ILESWDDQG 388
Q FY G C+G GV I E W +G
Sbjct: 348 QSVVFYDGDICLGGGVIEIAEPWSARG 374
>gi|418020532|ref|ZP_12659783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Regiella insecticola R5.15]
gi|347604119|gb|EGY28834.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Regiella insecticola R5.15]
Length = 367
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 212/370 (57%), Gaps = 25/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDSSVA LL G+ ++K W ++D + + C +D+ A+AVCD
Sbjct: 8 KIIVGMSGGVDSSVAAYLLKQQGYQVAGLFMKNWEEDDNDTY---CGAAKDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++++ L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF+ A + DY
Sbjct: 65 KLNINLHRVNFAAEYWDNVFKLFLAEYKAGRTPNPDILCNKEIKFNAFLSFAREELGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + H++A + + L D KDQ+YFL L+Q QL R +FP+G + K EV
Sbjct: 125 IATGHYVRR-HTTAGK----NCLLRGLDDNKDQSYFLYTLNQQQLARSLFPIGDLKKSEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q +L +KDS GICF+G+ KF +F+AR++ G I+ + D LG+H G +
Sbjct: 180 RNIAEQLNLITAKKKDSTGICFIGERKFRDFLARYLPAQPGPIISVDGQD-LGRHHGLMY 238
Query: 259 YTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL-KWLS 311
+T+GQR+GL + G PWYVV+K++ N + V++++ K +L G + + LS
Sbjct: 239 HTLGQRKGLGIGGIKEGNGAPWYVVDKNIATNTLLVAQDH----KHAKLMSHGLIAQQLS 294
Query: 312 GLPPEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+ P ++ L+C V+ Y + V EN V+ + + GQ A FYQ
Sbjct: 295 WIDPLSLTFPLRCMVKT---LYRQQDIPCTVFSRVENSIEVRFEQPIAAVTPGQSAVFYQ 351
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 352 GDICLGGGII 361
>gi|403237609|ref|ZP_10916195.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. 10403023]
Length = 370
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 206/370 (55%), Gaps = 16/370 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M K +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 1 MKDPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF++
Sbjct: 58 DVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A+GHYA+V + D EYK + D+ KDQTYFL+ L+Q QL +++FP+G
Sbjct: 118 TLGADYLATGHYAQV--ENRDGEYK---MLRGVDENKDQTYFLNQLTQDQLSKVMFPIGN 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
I K +VR+ A +L +KDS GICF+G+ F EF+ ++ G ++ +G+ GK
Sbjct: 173 IEKPKVRELAKNANLATATKKDSTGICFIGERNFKEFLGNYLPAQPGEMMTL-SGEVKGK 231
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ + KD++ N+++V + +++ ++ W+
Sbjct: 232 HDGLMYYTIGQRHGLGIGGSGEPWFAIGKDLEKNILYVDQGFHNEYLYSDSILATNVSWV 291
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S PE+ + K R+ + + ++ V+ EN V E + + GQ FY
Sbjct: 292 SDNRPEKDVKCTAKFRYRQ--QDNAVTVQKVD---ENTVKVIFDEPIRAVTPGQAVVFYN 346
Query: 371 GTRCIGSGVI 380
G C+G I
Sbjct: 347 GDECLGGATI 356
>gi|15597822|ref|NP_251316.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAO1]
gi|107102147|ref|ZP_01366065.1| hypothetical protein PaerPA_01003197 [Pseudomonas aeruginosa PACS2]
gi|116050613|ref|YP_790568.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa
UCBPP-PA14]
gi|355642080|ref|ZP_09052565.1| tRNA-specific 2-thiouridylase mnmA [Pseudomonas sp. 2_1_26]
gi|421167311|ref|ZP_15625509.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa ATCC
700888]
gi|421174191|ref|ZP_15631923.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa CI27]
gi|14195276|sp|Q9I0L2.1|MNMA_PSEAE RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|122259736|sp|Q02NB8.1|MNMA_PSEAB RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|9948693|gb|AAG06014.1|AE004691_5 tRNA methyltransferase [Pseudomonas aeruginosa PAO1]
gi|115585834|gb|ABJ11849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas aeruginosa UCBPP-PA14]
gi|354830484|gb|EHF14527.1| tRNA-specific 2-thiouridylase mnmA [Pseudomonas sp. 2_1_26]
gi|404534666|gb|EKA44393.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa CI27]
gi|404535090|gb|EKA44800.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa ATCC
700888]
Length = 375
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/390 (35%), Positives = 211/390 (54%), Gaps = 23/390 (5%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
+S S P + +V V +SGGVDSSV+ LL G+ ++K W ++D + C
Sbjct: 1 MSESAPTPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEY---CTAR 57
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED+ A+AVCD++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+
Sbjct: 58 EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFL 117
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
D + D +A+GHY + D++ + +L+ D KDQ+YFL + Q+ R +F
Sbjct: 118 DYALMLGADLIATGHYVR----RRDRDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLF 172
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G + K EVR A + L +KDS GICF+G+ +F++F+ +++ G I E G
Sbjct: 173 PVGELEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETTEGK 231
Query: 249 FLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLF 302
+G+H G ++TIGQRQGL + G PWYV+ KD++ NV+ V + R
Sbjct: 232 VIGRHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRAL 291
Query: 303 RVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
+ W++ + E RL+ KVR+ +C ++E +G + E + +
Sbjct: 292 LASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTAEGYRAV----FDEPQRAVTP 345
Query: 363 GQFAAFYQGTRCIGSGVI--LESWDDQGFP 390
GQ FY G C+G GVI E+WD G P
Sbjct: 346 GQSVVFYDGDVCLGGGVIETAEAWDFGGRP 375
>gi|254241058|ref|ZP_04934380.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192]
gi|126194436|gb|EAZ58499.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192]
Length = 375
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/390 (35%), Positives = 211/390 (54%), Gaps = 23/390 (5%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
+S S P + +V V +SGGVDSSV+ LL G+ ++K W ++D + C
Sbjct: 1 MSESAPTPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEY---CTAR 57
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED+ A+AVCD++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+
Sbjct: 58 EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFL 117
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
D + D +A+GHY + D++ + +L+ D KDQ+YFL + Q+ R +F
Sbjct: 118 DYALMLGADLIATGHYVR----RRDRDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLF 172
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G + K EVR A + L +KDS GICF+G+ +F++F+ +++ G I E G
Sbjct: 173 PVGELEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETTEGK 231
Query: 249 FLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLF 302
+G+H G ++TIGQRQGL + G PWYV+ KD++ NV+ V + R
Sbjct: 232 VIGRHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRAL 291
Query: 303 RVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
+ W++ + E RL+ KVR+ +C ++E +G + E + +
Sbjct: 292 LASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTTEGYRAV----FDEPQRAVTP 345
Query: 363 GQFAAFYQGTRCIGSGVI--LESWDDQGFP 390
GQ FY G C+G GVI E+WD G P
Sbjct: 346 GQSVVFYDGDVCLGGGVIETAEAWDFGGRP 375
>gi|429104145|ref|ZP_19166119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter turicensis 564]
gi|426290794|emb|CCJ92232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter turicensis 564]
Length = 369
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDVIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P K R+ C + ++D + I V+ +E + GQ A F
Sbjct: 295 WVDREPVTAPFTCTVKTRYRQADILCT--VRPLDD--DRIKVL-FNEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YLGEVCLGGGII 361
>gi|423452306|ref|ZP_17429159.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5X1-1]
gi|401139944|gb|EJQ47501.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5X1-1]
Length = 371
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 205/374 (54%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDANGV---CTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVEQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SNKAKETEFTCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|429108402|ref|ZP_19170271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter malonaticus 681]
gi|426295125|emb|CCJ96384.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter malonaticus 681]
Length = 369
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDTIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILVVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P K R+ C + ++D + I V+ E + GQ A F
Sbjct: 295 WVDREPVTAPFTCTVKTRYRQADIPCT--VRPLDD--DRIEVL-FDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YLGEVCLGGGII 361
>gi|312110111|ref|YP_003988427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y4.1MC1]
gi|311215212|gb|ADP73816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y4.1MC1]
Length = 371
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 203/366 (55%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 6 KDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVVR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+
Sbjct: 63 VCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHALSIGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DYVA+GHYA++ + D EYK L D+ KDQTYFL+ L Q QL +++FPLG + K
Sbjct: 123 DYVATGHYARIEYR--DGEYK---LLRGVDQKKDQTYFLNQLGQEQLSKVMFPLGHLEKA 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VR+ A L +KDS GICF+G+ F +F++ ++ G I++ G+ GKH G
Sbjct: 178 QVRQIAKDAGLATATKKDSTGICFIGERDFKKFLSSYLPAQPG-IMQTLDGEVKGKHDGV 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+YTIGQR GL + G PW+VV K+VK N+++V++ + + ++ W+S
Sbjct: 237 MYYTIGQRHGLGIGGNGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVNWVSDRK 296
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + R K R+ + HV D ++ V E + + GQ FY G C
Sbjct: 297 PPKSFRCTAKFRYRQPDIGVTV---HVMD--DDKVEVVFDEPVRAVTPGQAVVFYNGEEC 351
Query: 375 IGSGVI 380
+G G I
Sbjct: 352 LGGGTI 357
>gi|365157974|ref|ZP_09354217.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacillus smithii 7_3_47FAA]
gi|363622153|gb|EHL73324.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacillus smithii 7_3_47FAA]
Length = 371
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 204/366 (55%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 6 KDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVVR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF+D ++
Sbjct: 63 VCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHAMNLGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DYVA+GHYA+V + + L KD KDQTYFL+ L Q QL++++FP+G + K+
Sbjct: 123 DYVATGHYAQVEERGGEVK-----LLRGKDSNKDQTYFLNQLQQFQLEKVMFPIGHLEKK 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VR+ A + L +KDS GICF+G+ F EF+++++ G +E G +G+H G
Sbjct: 178 QVREIAQEAGLATAKKKDSTGICFIGERNFKEFLSQYLPAQPGK-METLDGKVMGEHDGL 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+YTIGQR GL + G PW+VV KDVK NV++V + +++ ++ W+S
Sbjct: 237 MYYTIGQRHGLGIGGSGEPWFVVGKDVKRNVLYVGQGFHNDALYSDSIIATNVGWVS--D 294
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
E+ + C + + ++++ + +G A V E + + GQ FY G C
Sbjct: 295 REKPQQFTCTAKFRYRQPDTKVIVQLLSNG---RASVVFDEPVRAVTPGQAVVFYNGEEC 351
Query: 375 IGSGVI 380
+G G I
Sbjct: 352 LGGGTI 357
>gi|334122426|ref|ZP_08496464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter hormaechei ATCC 49162]
gi|333392033|gb|EGK63140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter hormaechei ATCC 49162]
Length = 389
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 215/389 (55%), Gaps = 31/389 (7%)
Query: 3 QIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFW 62
+++ R S S QK KV V +SGGVDSSV+ LL G+ ++K W ++D E +
Sbjct: 12 EVQCREYSMSDNSQK--KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY- 68
Query: 63 TECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRI 122
C D+ A+AVCD++ + L V+ EYW NV +EEY+ GRTPNPD+LCN I
Sbjct: 69 --CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEI 126
Query: 123 KFGAFMD-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQA 181
KF AF++ A + DY+A+GHY + AD K +L D KDQ+YFL LS
Sbjct: 127 KFKAFLEFAAEDLGADYIATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHE 181
Query: 182 QLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVI 241
Q+ + +FP+G + K EVRK A DL +KDS GICF+G+ KF EF+ R++ G I
Sbjct: 182 QIAQSLFPVGELEKPEVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKI 241
Query: 242 LEAETGDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSF 295
+ + GD +G+H G ++T+GQR+GL + G PWYVV+KDV+NN++ V++ +
Sbjct: 242 VTVD-GDEIGQHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGH--- 297
Query: 296 DKKRRLFRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVV 351
RL VG L W+ P + R K R+ C + ++D + V
Sbjct: 298 -DHPRLMSVGLIAQQLHWVDREPLKGTLRCTVKTRYRQTDIPCT--VTALDD---DRIDV 351
Query: 352 QLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
+ E + GQ A FY G C+G G+I
Sbjct: 352 RFDEPVSAVTPGQSAVFYSGEICLGGGII 380
>gi|336234536|ref|YP_004587152.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoglucosidasius
C56-YS93]
gi|423719148|ref|ZP_17693330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus thermoglucosidans TNO-09.020]
gi|335361391|gb|AEH47071.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoglucosidasius
C56-YS93]
gi|383368051|gb|EID45326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus thermoglucosidans TNO-09.020]
Length = 371
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 203/366 (55%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 6 KDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVVR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+
Sbjct: 63 VCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHALSIGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DYVA+GHYA++ + D EYK L D+ KDQTYFL+ L Q QL +++FPLG + K
Sbjct: 123 DYVATGHYARIEYR--DGEYK---LLRGVDQKKDQTYFLNQLGQEQLSKVMFPLGHLEKA 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VR+ A L +KDS GICF+G+ F +F++ ++ G I++ G+ GKH G
Sbjct: 178 QVRQIAKDAGLATATKKDSTGICFIGERDFKKFLSSYLPAQPG-IMQTLDGEVKGKHDGV 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+YTIGQR GL + G PW+VV K+VK N+++V++ + + ++ W+S
Sbjct: 237 MYYTIGQRHGLGIGGNGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVNWVSDRK 296
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + R K R+ + HV D ++ V E + + GQ FY G C
Sbjct: 297 PPKSFRCTAKFRYRQPDIGVTV---HVMD--DDKVEVIFDEPVRAVTPGQAVVFYNGEEC 351
Query: 375 IGSGVI 380
+G G I
Sbjct: 352 LGGGTI 357
>gi|315303264|ref|ZP_07873908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria ivanovii FSL F6-596]
gi|313628376|gb|EFR96865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria ivanovii FSL F6-596]
Length = 371
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 199/368 (54%), Gaps = 16/368 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV LL G+ ++K W +D + F C ED + V
Sbjct: 8 IRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYEDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y + EY+ GRTPNPDV+CN IKF AF++ S+ D+
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLNEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QL++++FPLG + K EV
Sbjct: 125 VATGHYAQVKQVGDEIELLRGV-----DNNKDQTYFLNQLSQEQLQKVMFPLGGMEKSEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ AT+ L ++KDS GICF+G+ F +F++ ++ G ++ G+ LGKH G +
Sbjct: 180 REIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGK-MQTLNGEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
YTIGQR GL + G PW+VV KD+ N++FV + ++ + + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLTENILFVEQGFHHETLYSDSLIATDISFTTNAAKP 298
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ K R+ + H+ D +N A V +E + + GQ FY G C+G
Sbjct: 299 KTIECTAKFRYRQTDTKVTV---HLRD--DNTAEVVFAEPVRAITPGQAVVFYDGDICLG 353
Query: 377 SGVILESW 384
G I W
Sbjct: 354 GGTIDTVW 361
>gi|145298399|ref|YP_001141240.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362387|ref|ZP_12963021.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|166234842|sp|A4SKS0.1|MNMA_AERS4 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|142851171|gb|ABO89492.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Aeromonas salmonicida subsp. salmonicida A449]
gi|356686397|gb|EHI51000.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 368
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 209/379 (55%), Gaps = 30/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+
Sbjct: 1 MTDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDEY---CSASQDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAVCD++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A
Sbjct: 58 DAKAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ Y+A+GHY + S+ P +L D KDQ+YFL LS+ Q+ + +FP+G
Sbjct: 118 EELGATYIATGHYVRRDDSTG----HPRLLR-GLDSNKDQSYFLYTLSEKQVGQSLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K EVR+ A Q DL +KDS GICF+G+ KF +F+A+ + G I E G +G
Sbjct: 173 DLEKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLPAQPGPI-ETVDGKVIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G WYVV+K+V+ N + V++ + RL+ G
Sbjct: 232 EHQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLVVAQGEHP-----RLYSDG 286
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ P R K R+ C +I+ ++D E I V+ E +
Sbjct: 287 LIASQLHWVDRTPIRAPRRCTVKTRYRQQDIPC--LIQPIDD--ETIRVI-FDEKQAAVT 341
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 342 PGQSAVFYDGEVCLGGGII 360
>gi|444424674|ref|ZP_21220127.1| tRNA-specific 2-thiouridylase MnmA [Vibrio campbellii CAIM 519 =
NBRC 15631]
gi|444241978|gb|ELU53495.1| tRNA-specific 2-thiouridylase MnmA [Vibrio campbellii CAIM 519 =
NBRC 15631]
Length = 374
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 205/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGEKPEMLR-GLDSNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GIC +G+ KF+EF+ R++ G I E G+ +G+H G +
Sbjct: 182 RRIAEEQDLITAKKKDSTGICLIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQGLMY 240
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD++ NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 301 DREPIRDVMKCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYK 355
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 356 DDVCLGGGII 365
>gi|260597502|ref|YP_003210073.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter turicensis z3032]
gi|260216679|emb|CBA30030.1| tRNA-specific 2-thiouridylase mnmA [Cronobacter turicensis z3032]
Length = 369
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDVIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P K R+ C + ++D + I V+ E + GQ A F
Sbjct: 295 WVDREPVTAPFTCTVKTRYRQADIPCT--VRPLDD--DRIEVL-FDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YLGEVCLGGGII 361
>gi|336249795|ref|YP_004593505.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter aerogenes KCTC
2190]
gi|444351995|ref|YP_007388139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
2.1.1.61) [Enterobacter aerogenes EA1509E]
gi|334735851|gb|AEG98226.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter aerogenes KCTC
2190]
gi|443902825|emb|CCG30599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
2.1.1.61) [Enterobacter aerogenes EA1509E]
Length = 368
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 210/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNVLIVAQGH----DHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDRQPLQGTLRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YSGEVCLGGGII 360
>gi|116872941|ref|YP_849722.1| tRNA-specific 2-thiouridylase MnmA [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|123461086|sp|A0AIW1.1|MNMA_LISW6 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|116741819|emb|CAK20943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria welshimeri serovar 6b str. SLCC5334]
Length = 371
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 202/371 (54%), Gaps = 16/371 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y +EEY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLEEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 VATGHYAQVKKIGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ AT+ L ++KDS GICF+G+ F +F++ ++ G + + G+ LGKH G +
Sbjct: 180 REIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLD-GEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
YTIGQR GL + G PW+VV KD+K NV+FV + ++ + + + E
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHESLYSDSLIATDISFTTN--AE 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ +C + + + + DG A V ++ + + GQ FY G C+G
Sbjct: 297 KPKTFECTAKFRYRQTDTKVTVHLRSDG---TAEVVFADPVRAITPGQAVVFYDGDICLG 353
Query: 377 SGVILESWDDQ 387
G I W ++
Sbjct: 354 GGTIDTVWKNE 364
>gi|429109905|ref|ZP_19171675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter malonaticus 507]
gi|426311062|emb|CCJ97788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter malonaticus 507]
Length = 369
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDTIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P K R+ C + ++D + I V+ E + GQ A F
Sbjct: 295 WVDREPVTAPFTCTVKTRYRQADIPCT--VRPLDD--DRIEVL-FDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YLGEVCLGGGII 361
>gi|238754412|ref|ZP_04615768.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473]
gi|238707445|gb|EEP99806.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473]
Length = 371
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/375 (39%), Positives = 209/375 (55%), Gaps = 35/375 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL L QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RHDVNGKSQLLR-GLDSNKDQSYFLYTLGHDQLAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A DL +KDS GICF+G+ KF +F+AR++ G IL + G +LG+H G +
Sbjct: 180 RRIAETLDLVTAKKKDSTGICFIGERKFRDFLARYLPAQPGQILSVD-GQYLGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NNV+ V++ + + RL G L
Sbjct: 239 HTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNVLVVAQGH----EHPRLMSTGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA---GQF 365
W+ I+ +C V+ + + ++D E I V DQ +AA GQ
Sbjct: 295 WVD--RQTVIAPFRCVVKTRYRQQDIPCTVTPLDD--ERIDVCF----DQPVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVI 380
A FYQG C+G G+I
Sbjct: 347 AVFYQGEVCLGGGII 361
>gi|387928709|ref|ZP_10131387.1| tRNA-specific 2-thiouridylase MnmA [Bacillus methanolicus PB1]
gi|387588295|gb|EIJ80617.1| tRNA-specific 2-thiouridylase MnmA [Bacillus methanolicus PB1]
Length = 370
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 210/377 (55%), Gaps = 42/377 (11%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W D +N C ED + K V +
Sbjct: 6 RVVMGMSGGVDSSVAAYLLKKEGYEVIGVFMKNW---DDKNDDGVCTAAEDFEDVKIVSN 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EYW +V +Y +EE + GRTPNPDVLCN+ IKF AF+D S++ DYV
Sbjct: 63 QLGIPYYSVNFEKEYWDHVFTYFMEELKLGRTPNPDVLCNSEIKFKAFIDFALSLDADYV 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V ++E L KD KDQ+YFLS L+ QL ++IFPLG ++K+EVR
Sbjct: 123 ATGHYARV-----NRENGEVTLLRGKDSNKDQSYFLSQLTGEQLSKVIFPLGELTKDEVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETGDFLGKHWG 255
K A + +L ++KDS GICF+G+ F F+ + GE+ +I G+ LG+H G
Sbjct: 178 KIAKEINLSTANKKDSTGICFIGERNFKSFLKNFLPAQPGEIRSII-----GEVLGQHDG 232
Query: 256 FWFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQR+GL + G PW+VV+KD+ NNV+ V++ + + +
Sbjct: 233 LMYYTIGQRKGLGIGGKGAPEPWFVVDKDLDNNVLIVAQG-----------KDNPALYSN 281
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGG--------ENIAVVQLSEDDQGLAAG 363
G+ IS + + P ++C + ++ + A+V+ + + + G
Sbjct: 282 GIIAANISFINGD--YSPRSFSCTAKFRYRQEDQKVKVHVRPDRTALVEYEQPIKAVTPG 339
Query: 364 QFAAFYQGTRCIGSGVI 380
Q A FY C+GSG+I
Sbjct: 340 QVAVFYDQDVCLGSGII 356
>gi|417998998|ref|ZP_12639211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei T71499]
gi|410539938|gb|EKQ14460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei T71499]
Length = 377
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 196/371 (52%), Gaps = 18/371 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 11 IRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVA 67
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY
Sbjct: 68 SEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNADY 127
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHYA+V D+ +L D KDQTYFLS LSQ QLK+ +FP+G + K EV
Sbjct: 128 IAMGHYAQV---KTDENGIVHMLR-GADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPEV 183
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ F +F++ ++ G ++ + G +G H G +
Sbjct: 184 RKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEMGTHDGLMY 242
Query: 259 YTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
YTIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 243 YTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGQ 302
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P E + + K R+ + + + H +DG A V + + GQ FY G
Sbjct: 303 APAEGTHMTAKFRYRQ--RDTGVTLHHHDDG---TATVDFDVPVRAITPGQAVVFYDGDE 357
Query: 374 CIGSGVILESW 384
C+G G I ++
Sbjct: 358 CLGGGTIDAAY 368
>gi|423470612|ref|ZP_17447356.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6O-2]
gi|402436278|gb|EJV68310.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6O-2]
Length = 371
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 207/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVEQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SNKAKETEFTCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|422422238|ref|ZP_16499191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri FSL S4-171]
gi|313637741|gb|EFS03100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri FSL S4-171]
Length = 371
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 203/368 (55%), Gaps = 16/368 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV LL G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ D+
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QL++++FPLG + K+EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQEQLQKVMFPLGGMEKKEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ AT+ L ++KDS GICF+G+ F +F++ ++ G ++ G+ LGKH G +
Sbjct: 180 REIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGK-MQTLDGEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
YTIGQR GL + G PW+V KD+K N++FV + ++ + + + E
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDISFTTN--AE 296
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ ++C + + + + H+ D N A V +E + + GQ FY G C+G
Sbjct: 297 KPKTIECTAKFRYRQTDTKVTV-HLRD--NNTAEVVFAEPVRAITPGQAVVFYDGDICLG 353
Query: 377 SGVILESW 384
G I W
Sbjct: 354 GGTIDTVW 361
>gi|289208445|ref|YP_003460511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thioalkalivibrio sp. K90mix]
gi|288944076|gb|ADC71775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thioalkalivibrio sp. K90mix]
Length = 373
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/367 (37%), Positives = 200/367 (54%), Gaps = 21/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V LSGGVDS+VA L AG+ ++K W +D + C E D + A+ V
Sbjct: 6 RVIVGLSGGVDSAVAASRLLEAGYRVEGLFMKNWEDDDDAEY---CAAEADFEMAREVAA 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+++PL + ++Y + V + + EY GRTPNPD+LCN IKF +F+D + ++
Sbjct: 63 CLEIPLHKANFAEDYRQRVFRHFLHEYEAGRTPNPDILCNREIKFRSFLDHARQLGAQWI 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V H E L ++ D KDQTYFL L+Q QL+ +FPLG I K++VR
Sbjct: 123 ATGHYARVRHLPGHSE-----LCMAADANKDQTYFLHTLTQEQLRPALFPLGDIPKDQVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + LPN RKDS GICF+G+ +F +F+A+++ EG + E G +G H G FY
Sbjct: 178 ARARELGLPNHARKDSTGICFIGERRFRDFLAQYLRAPEGEMCTPE-GQVVGHHQGLMFY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + P PWYVV+KD+ +N + V+++ ++ W+
Sbjct: 237 TLGQRQGLGIGGIDGFPEAPWYVVDKDLGSNRLIVAQDPRHPLLMSPEIETETVHWIH-R 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PPE + ++RH C L E V DGG V+ + GQ A FY G
Sbjct: 296 PPEPGRPVMARLRHRQPLQPCRL--ESV-DGGR--VRVRFDAPQRAATPGQSAVFYNGDV 350
Query: 374 CIGSGVI 380
C+G VI
Sbjct: 351 CLGGAVI 357
>gi|182415638|ref|YP_001820704.1| tRNA-specific 2-thiouridylase MnmA [Opitutus terrae PB90-1]
gi|205816897|sp|B1ZZ32.1|MNMA_OPITP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|177842852|gb|ACB77104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Opitutus terrae PB90-1]
Length = 378
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 208/380 (54%), Gaps = 29/380 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDSSVA LL G+ Y+K W ED CPW++D++ A+ V
Sbjct: 6 KILVAMSGGVDSSVAALLLKQQGYDVVGAYMKNWINED--QVIGHCPWQQDIEDARRVAT 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ + VV+L EY + VV+Y+++ Y G TPNPD++CN +KFG F F +
Sbjct: 64 QIGIEFRVVNLMREYRERVVAYLLDGYARGLTPNPDIMCNREVKFGVFRSWAKDHGFAAI 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLE---------------LSKDKVKDQTYFLSHLSQAQLK 184
A+GHYA+ V D P+VL DK KDQ+YFL+ LSQ QL+
Sbjct: 124 ATGHYAQRVEVKPDL-VTPAVLGGLNADGTPASTFALLEGADKNKDQSYFLALLSQEQLR 182
Query: 185 RLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEA 244
FP+G + K E+R+ A + L D+KDSQGICF+G++K +F+ ++ + G I+ A
Sbjct: 183 DARFPIGHLPKPELRRIAREAGLATADKKDSQGICFIGEVKMQDFLRAYVPDAPGPIVRA 242
Query: 245 ETGDFLGKHWGFWFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKK-R 299
G LG+H G FYT+GQR+G+ +P + VV K + + V+ ++ +
Sbjct: 243 TDGRELGQHRGLHFYTLGQRKGIGIPSNTDHEAYVVVGKRAADRALLVAFDHPDAPGLFQ 302
Query: 300 RLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQG 359
R RV +L W+ G P L+ +VR + + + +E V + E A+++ + +G
Sbjct: 303 REVRVHALSWI-GKPVTTARALEGRVR----YRDPRVPLEFVPE-SETTALIRFAAPQRG 356
Query: 360 LAAGQFAAFYQGTRCIGSGV 379
LAAGQ AFY G R +G GV
Sbjct: 357 LAAGQILAFYDGERLLGGGV 376
>gi|420347393|ref|ZP_14848793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella boydii 965-58]
gi|391271342|gb|EIQ30217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella boydii 965-58]
Length = 368
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+ VCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQTVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGVHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|53804157|ref|YP_114223.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Methylococcus capsulatus str. Bath]
gi|81681831|sp|Q607H5.1|MNMA_METCA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|53757918|gb|AAU92209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylococcus capsulatus str. Bath]
Length = 371
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 198/368 (53%), Gaps = 22/368 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V V +SGGVDSSV LL G+ + ++K W ++D + C +D AK VC++
Sbjct: 5 VVVGMSGGVDSSVTALLLLRQGYRVSGLFMKNWEEDDGTEY---CTAAQDFADAKQVCER 61
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ V L V+ EYW V + EYR GRTPNPD+LCN +IKF AF+D + D +A
Sbjct: 62 LGVELHTVNFAAEYWDEVFEVFLSEYRAGRTPNPDILCNKQIKFRAFLDYAEDLGADLIA 121
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
GHYA+V A++E + +L+ D KDQ+YFL L Q QL R +FPLG + K EVR
Sbjct: 122 MGHYARV----AEEEGRLQLLK-GCDPGKDQSYFLYTLQQEQLARTLFPLGGLRKTEVRA 176
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A N +KDS GICF+G+ +F +F+AR++ G I E G LG+H G +YT
Sbjct: 177 LAAGAGFANDAKKDSTGICFIGERRFKDFLARYLPARPGDIRTPE-GVLLGRHDGLMYYT 235
Query: 261 IGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL- 313
+GQR GL + G PWYV++KD+ NV+ V + + R L W+ G
Sbjct: 236 LGQRSGLGIGGTRAGGQEPWYVLDKDLARNVLVVGQGHDHPLLYRDGLLASRLHWVDGAG 295
Query: 314 -PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P EI R K R+ +C + + GE+ V ++ + + GQ FYQ
Sbjct: 296 PAPGEILRCAAKTRYRQSDQDCRIRLI-----GEDRLEVVFAQPQRAVTPGQSVVFYQDD 350
Query: 373 RCIGSGVI 380
C+G GVI
Sbjct: 351 CCLGGGVI 358
>gi|339008614|ref|ZP_08641187.1| tRNA-specific 2-thiouridylase MnmA [Brevibacillus laterosporus LMG
15441]
gi|338774414|gb|EGP33944.1| tRNA-specific 2-thiouridylase MnmA [Brevibacillus laterosporus LMG
15441]
Length = 376
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 210/379 (55%), Gaps = 19/379 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M + +V V +SGGVDSSV LL G+ ++K W +D + F C EED
Sbjct: 1 MKKPEDTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDTDEF-GHCTAEEDYH 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
+ VCDQ+ +P V+ EY + V SY ++EY+ GRTPNPDV+CN IKFG F++ +
Sbjct: 58 DVRRVCDQIGIPYYTVNFEKEYMEKVFSYFLDEYKSGRTPNPDVMCNREIKFGEFLNKVM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DYVA+GHYA+V D EYK L D+ KDQTYFL+ L Q QL + +FP+G
Sbjct: 118 DLGADYVATGHYARV--ELRDGEYK---LLRGVDENKDQTYFLNQLGQNQLAKTLFPIGH 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K++VR+ A + L +KDS GICF+G+ F EF+ ++ G I E G+ +G
Sbjct: 173 LPKKQVREIADRAGLATAKKKDSTGICFIGERNFREFLQNYLPARPGKI-ETTDGEVIGN 231
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YT+GQRQGL + GG PW+VV+KD++ NV+ V + +
Sbjct: 232 HDGLMYYTLGQRQGLGIGGGAGEGLPWFVVDKDLERNVLIVGQGSNHPWLYSSHLIAEQV 291
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
KW+S P EE+ K R+ + + + +E ++ V+ +E + + GQ
Sbjct: 292 KWVSDEPKEEVFTCMAKFRYRQP--DQQVTVRRIE---KDTYKVEFAEPQKAVTPGQAVV 346
Query: 368 FYQGTRCIGSGVILESWDD 386
FYQG C+G G I + + D
Sbjct: 347 FYQGEECLGGGTIDKVYID 365
>gi|242239492|ref|YP_002987673.1| tRNA-specific 2-thiouridylase MnmA [Dickeya dadantii Ech703]
gi|242131549|gb|ACS85851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dickeya dadantii Ech703]
Length = 370
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/376 (37%), Positives = 205/376 (54%), Gaps = 28/376 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTEY---CSAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EYR GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLCADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RQDIAGKSRLLR-GLDNNKDQSYFLYTLSHEQVAQSLFPVGELEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF +F+AR++ G I+ + G +G+H G +
Sbjct: 180 RRIAEELDLATAKKKDSTGICFIGERKFRDFLARYLPAQPGAIISVDDGKTMGEHQGLMY 239
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN+++V++ + + RL G L
Sbjct: 240 HTLGQRKGLGIGGVRDGGDDPWYVVDKDVANNILYVAQGH----EHPRLMSQGLIAQQLH 295
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + K R+ C L GE V+ + GQ A F
Sbjct: 296 WVDREPLSQPQTCTVKTRYRQADIPCTLTPL-----GEERVEVRFESPVAAVTPGQSAVF 350
Query: 369 YQGTRCIGSGVILESW 384
YQG C+G G+I E +
Sbjct: 351 YQGEVCLGGGIIEERF 366
>gi|423521748|ref|ZP_17498221.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA4-10]
gi|401176410|gb|EJQ83605.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA4-10]
Length = 371
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 204/370 (55%), Gaps = 18/370 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDANGV---CTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SNKAKEKEFTCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVI 380
G C+G I
Sbjct: 348 GDECLGGATI 357
>gi|295096181|emb|CBK85271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 370
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 180 RKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDEIGQHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + R K R+ C + + ++ V+ E + GQ A F
Sbjct: 295 WVDREPLKGTLRCTVKTRYRQTDIPCTVTALY-----DDRIDVRFDEPVSAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YSGEICLGGGII 361
>gi|218891213|ref|YP_002440079.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa LESB58]
gi|420139596|ref|ZP_14647423.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa CIG1]
gi|421153959|ref|ZP_15613489.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa ATCC
14886]
gi|421160192|ref|ZP_15619278.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa ATCC
25324]
gi|226704774|sp|B7UV15.1|MNMA_PSEA8 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|218771438|emb|CAW27205.1| tRNA methyltransferase [Pseudomonas aeruginosa LESB58]
gi|403247651|gb|EJY61280.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa CIG1]
gi|404522819|gb|EKA33283.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa ATCC
14886]
gi|404545212|gb|EKA54315.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa ATCC
25324]
Length = 375
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/390 (35%), Positives = 211/390 (54%), Gaps = 23/390 (5%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
+S S P + +V V +SGGVDSSV+ LL G+ ++K W ++D + C
Sbjct: 1 MSESAPTPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEY---CTAR 57
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED+ A+AVCD++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+
Sbjct: 58 EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFL 117
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
D + D +A+GHY + D++ + +L+ D KDQ+YFL + Q+ R +F
Sbjct: 118 DYALMLGADLIATGHYVR----RRDRDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLF 172
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G + K EVR A + L +KDS GICF+G+ +F++F+ +++ G I E G
Sbjct: 173 PVGELEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETIEGK 231
Query: 249 FLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLF 302
+G+H G ++TIGQRQGL + G PWYV+ KD++ NV+ V + R
Sbjct: 232 VIGRHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRAL 291
Query: 303 RVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
+ W++ + E RL+ KVR+ +C ++E +G + E + +
Sbjct: 292 LASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTAEGYRAV----FDEPQRAVTP 345
Query: 363 GQFAAFYQGTRCIGSGVI--LESWDDQGFP 390
GQ FY G C+G GVI E+WD G P
Sbjct: 346 GQSVVFYDGDVCLGGGVIETAEAWDFGGRP 375
>gi|347548895|ref|YP_004855223.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria ivanovii subsp. ivanovii PAM 55]
gi|346981966|emb|CBW85951.1| Putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria ivanovii subsp. ivanovii PAM 55]
Length = 371
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 199/369 (53%), Gaps = 16/369 (4%)
Query: 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
G++V V +SGGVDSSV LL G+ ++K W +D + F C ED V
Sbjct: 7 GIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRV 63
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
+Q+ +P V+ EYW V +Y + EY+ GRTPNPDV+CN IKF AF++ S+ D
Sbjct: 64 ANQIGIPYYAVNFEKEYWDKVFTYFLNEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGAD 123
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+VA+GHYA+V + E V D KDQTYFL+ LSQ QL++++FPLG + K E
Sbjct: 124 FVATGHYAQVKQVGDEIELLRGV-----DNNKDQTYFLNQLSQEQLQKVMFPLGGMEKSE 178
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ AT+ L ++KDS GICF+G+ F +F++ ++ G ++ G+ LGKH G
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGK-MQTLNGEVLGKHDGLM 237
Query: 258 FYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
+YTIGQR GL + G PW+VV KD+ N++FV + ++ + + +
Sbjct: 238 YYTIGQRHGLGIGGDGEPWFVVGKDLTENILFVEQGFHHDTLYSDSLIATDISFTTNAAK 297
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
+ K R+ + H+ D ++ A V +E + + GQ FY G C+
Sbjct: 298 PKTIECTAKFRYRQTDTKVTV---HLRD--DHTAEVVFAEPVRAITPGQAVVFYDGDICL 352
Query: 376 GSGVILESW 384
G G I W
Sbjct: 353 GGGTIDTVW 361
>gi|374325359|ref|YP_005078488.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus terrae HPL-003]
gi|357204368|gb|AET62265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus terrae HPL-003]
Length = 375
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 207/369 (56%), Gaps = 23/369 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + F C EED + + VC+
Sbjct: 11 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDTDEF-GRCTAEEDAEDVRRVCE 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+D+P V+ EY+ V SY ++EY+ GRTPNPDV+CN IKFG F++ + DYV
Sbjct: 68 QIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKALDLGADYV 127
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+VV D++ ++L D KDQTYFL+ LSQ QL R +FP+G + K EVR
Sbjct: 128 ATGHYARVV----DEDGHFTLLR-GVDSNKDQTYFLNALSQKQLSRAMFPIGHLPKPEVR 182
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS G+CF+G+ F EF++ ++ G +++ TG+ G+H G +Y
Sbjct: 183 KIAEAAGLYTAKKKDSTGVCFIGERNFKEFLSGYLPAKGGDMVDIATGEVKGRHDGLMYY 242
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLS 311
T+GQRQGL + G PW+V +KD++ N+++V + D+ L+ + W++
Sbjct: 243 TLGQRQGLGIGGSGSGEPWFVADKDLERNILYVVQG----DRHHSLYSTSLIATDVNWIA 298
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G +C + + + ++ +EDG ++ + + GQ FY G
Sbjct: 299 GADTRPSGEFRCTAKFRYRQPDQQVTLQWLEDGTVHVV---FDVHQKAITPGQAVVFYDG 355
Query: 372 TRCIGSGVI 380
RC+G G I
Sbjct: 356 ERCLGGGTI 364
>gi|312881247|ref|ZP_07741045.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309371139|gb|EFP98593.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 369
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 21/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEDY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF+D A +E DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLDFADDVLEADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + +DQ KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVRRSCIESDQ--KPQMLR-GLDGNKDQSYFLYTLSHEQIGRSLFPVGELEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F+++++ G I E G +G+H G +
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSKYLPAQPGKI-ETPEGKEIGEHQGLMY 240
Query: 259 YTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGQKGGGGNEEPWYVADKDLKRNVLIAVQGADHPLLKSEGLIASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P +S ++C V+ + I +++G +I V+ + GQ A FYQ
Sbjct: 301 DRSPL--VSEIKCSVKTRYRQNDIPCTIVPIDNG--SIKVI-FDNPQVAVTPGQSAVFYQ 355
Query: 371 GTRCIGSGVILE 382
G C+G G+I E
Sbjct: 356 GDVCLGGGIIEE 367
>gi|153838264|ref|ZP_01990931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus AQ3810]
gi|161511058|ref|NP_797509.2| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus RIMD
2210633]
gi|260364461|ref|ZP_05777086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus K5030]
gi|260877061|ref|ZP_05889416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus AN-5034]
gi|260896850|ref|ZP_05905346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus Peru-466]
gi|260902426|ref|ZP_05910821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus AQ4037]
gi|433657352|ref|YP_007274731.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus BB22OP]
gi|32130287|sp|Q87QL9.2|MNMA_VIBPA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|149748319|gb|EDM59178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus AQ3810]
gi|308087006|gb|EFO36701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus Peru-466]
gi|308093683|gb|EFO43378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus AN-5034]
gi|308110639|gb|EFO48179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus AQ4037]
gi|308114601|gb|EFO52141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus K5030]
gi|432508040|gb|AGB09557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio parahaemolyticus BB22OP]
Length = 374
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 204/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A +E DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGEKPQMLR-GLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF+EF+ R++ G I E G+ +G+H G +
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQGLMY 240
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD+ NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 301 DREPIRDVMKCTVKTRYRQQDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYK 355
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 356 DDVCLGGGII 365
>gi|340788819|ref|YP_004754284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Collimonas fungivorans Ter331]
gi|340554086|gb|AEK63461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Collimonas fungivorans Ter331]
Length = 373
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/377 (37%), Positives = 201/377 (53%), Gaps = 26/377 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSV+ +L G+ ++K W +D + C +D A +V D
Sbjct: 6 RVVIGMSGGVDSSVSAWMLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDAVSVAD 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ V +E V+ EY V + + EY+ GRTPNPDVLCN IKF AF+D + D +
Sbjct: 63 VIGVDIEAVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMKLGADLI 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V + + + EL K D KDQ+YFL L+Q+QL R +FPLG I K E
Sbjct: 123 ATGHYARVRQADSGR------FELLKAVDASKDQSYFLHRLNQSQLSRTLFPLGEIQKTE 176
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VRK A Q LPN +KDS GICF+G+ F EF+ R++ G ++ GD +G+H G
Sbjct: 177 VRKIAEQIQLPNAKKKDSTGICFIGERPFREFLNRYLSYKPGP-MKTPDGDVVGEHVGLS 235
Query: 258 FYTIGQRQGLRLPG-----------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
FYT+GQR+G+ L G PWYV KDV+NN +++ + + + G
Sbjct: 236 FYTLGQRKGIGLGGMKTHKNAGGDSDPWYVARKDVENNTLYIVQGHDHPWLLSSTLQAGQ 295
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W++G P +L K R+ C + + EN A + S+ + GQ A
Sbjct: 296 LSWVAGEAPGS-GQLSAKTRYRQADMACTFDSLRLPE-AENFA-LSFSDPQWAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVILES 383
Y G C+G G+I S
Sbjct: 353 VLYDGDICLGGGIIESS 369
>gi|333926829|ref|YP_004500408.1| tRNA-specific 2-thiouridylase mnmA [Serratia sp. AS12]
gi|333931783|ref|YP_004505361.1| tRNA-specific 2-thiouridylase mnmA [Serratia plymuthica AS9]
gi|386328652|ref|YP_006024822.1| tRNA-specific 2-thiouridylase mnmA [Serratia sp. AS13]
gi|333473390|gb|AEF45100.1| tRNA-specific 2-thiouridylase mnmA [Serratia plymuthica AS9]
gi|333490889|gb|AEF50051.1| tRNA-specific 2-thiouridylase mnmA [Serratia sp. AS12]
gi|333960985|gb|AEG27758.1| tRNA-specific 2-thiouridylase mnmA [Serratia sp. AS13]
Length = 367
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 205/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + D+
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDGKSRLLR-GVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ E G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIVNVE-GQTVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NNV+ V++ + RL G L
Sbjct: 239 HTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGH----DHPRLMSTGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ LP R K R+ C + ++D + I V+ E + GQ A F
Sbjct: 295 WVDRLPLSGPLRCTVKTRYRQQDIPCT--VTPLDD--QRIE-VRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQ C+G G+I
Sbjct: 350 YQDEICLGGGII 361
>gi|238783798|ref|ZP_04627817.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970]
gi|238715349|gb|EEQ07342.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970]
Length = 373
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 203/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL LS QL + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVNGKSRLLR-GLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQHVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGDDPWYVVDKDVANNILLVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + ++D + V+ + GQ A F
Sbjct: 295 WVDRQPITAAFRCVVKTRYRQQDIPCT--VTPLDD---DRVEVRFDNPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQ C+G G+I
Sbjct: 350 YQAEVCLGGGII 361
>gi|336114488|ref|YP_004569255.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus coagulans 2-6]
gi|335367918|gb|AEH53869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus coagulans 2-6]
Length = 371
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 197/363 (54%), Gaps = 16/363 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W D EN C ED VC+
Sbjct: 9 RVVVGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIRVCN 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++ ++ DY+
Sbjct: 66 QIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHALNLGADYL 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EYK + D KDQTYFL+ L Q QL R++FP+G + K VR
Sbjct: 126 ATGHYARVAYR--DGEYK---MLRGADGNKDQTYFLNQLGQHQLSRVMFPIGELEKPRVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L ++KDS GICF+G+ F EF++ ++ +G +++ G +G+H G +Y
Sbjct: 181 EIAKEAGLATANKKDSTGICFIGERNFKEFLSHYLPAQKG-LMKTLDGKVMGEHEGLMYY 239
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ V KD+K NV++V + ++ W+SG P E
Sbjct: 240 TIGQRHGLGIGGSGEPWFAVGKDLKENVLYVEQGFHHPALYSDYMTGVKANWVSGRKPPE 299
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
R K R+ + + G++ V E + + GQ FY G C+G
Sbjct: 300 EFRCTAKFRYRQPDQKVTVQLL-----GDDEVKVIYDEPVRAVTPGQAVVFYNGEECLGG 354
Query: 378 GVI 380
I
Sbjct: 355 ATI 357
>gi|71281561|ref|YP_269601.1| tRNA-specific 2-thiouridylase MnmA [Colwellia psychrerythraea 34H]
gi|123632113|sp|Q480B8.1|MNMA_COLP3 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|71147301|gb|AAZ27774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Colwellia psychrerythraea 34H]
Length = 375
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/372 (36%), Positives = 204/372 (54%), Gaps = 26/372 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D++ A+A+CD
Sbjct: 14 KVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDTDEY---CAASQDLEDAQAICD 70
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++D+ L ++ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A + DY
Sbjct: 71 KLDIKLHTINFATEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFACEDLGADY 130
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY V D +K + D KDQ+YFL L +AQL +FP+G I K EV
Sbjct: 131 IATGHY--VQRELRDNSWK---MIRGLDNNKDQSYFLYTLDEAQLAHTLFPVGHIEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + L ++KDS GICF+G+ KF +F+ +++ G+I AE G +G H G +
Sbjct: 186 RAIAEKAGLITHNKKDSTGICFIGERKFKDFLGQYLPAQPGIIESAE-GVAVGHHDGLMY 244
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GLR+ G PWYVVEKD+ NV+ V + + RLF G L
Sbjct: 245 HTLGQRKGLRIGGLADAGEEPWYVVEKDLLRNVLIVGQGH----NHPRLFSKGLIANQLH 300
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ S +QC V+ + + + + D + +E + GQ F
Sbjct: 301 WVD--RKALTSSIQCTVKTRYRQEDVSCTVTPITDSATEEYQIDFTEQQSSVTPGQSVVF 358
Query: 369 YQGTRCIGSGVI 380
Y+ C+G G+I
Sbjct: 359 YKDDVCLGGGII 370
>gi|46907740|ref|YP_014129.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes serotype
4b str. F2365]
gi|226224113|ref|YP_002758220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254824429|ref|ZP_05229430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J1-194]
gi|254852136|ref|ZP_05241484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL R2-503]
gi|254931447|ref|ZP_05264806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes HPB2262]
gi|254993966|ref|ZP_05276156.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
J2-064]
gi|300764822|ref|ZP_07074812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL N1-017]
gi|386732250|ref|YP_006205746.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes
07PF0776]
gi|404281071|ref|YP_006681969.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2755]
gi|404286934|ref|YP_006693520.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405749856|ref|YP_006673322.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes ATCC 19117]
gi|405752732|ref|YP_006676197.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2378]
gi|405755670|ref|YP_006679134.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2540]
gi|406704285|ref|YP_006754639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes L312]
gi|417316053|ref|ZP_12102711.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J1816]
gi|417317625|ref|ZP_12104237.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J1-220]
gi|422809592|ref|ZP_16858003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J1-208]
gi|424714387|ref|YP_007015102.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes serotype
4b str. LL195]
gi|424823274|ref|ZP_18248287.1| tRNA-specific 2-thiouridylase mnmA [Listeria monocytogenes str.
Scott A]
gi|67461977|sp|Q71ZF8.1|MNMA_LISMF RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|259495831|sp|C1KVF9.1|MNMA_LISMC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|46881009|gb|AAT04306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes serotype 4b str. F2365]
gi|225876575|emb|CAS05284.1| Putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|258605439|gb|EEW18047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL R2-503]
gi|293582998|gb|EFF95030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes HPB2262]
gi|293593665|gb|EFG01426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J1-194]
gi|300514498|gb|EFK41555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL N1-017]
gi|328465550|gb|EGF36779.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J1816]
gi|328474873|gb|EGF45673.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J1-220]
gi|332311954|gb|EGJ25049.1| tRNA-specific 2-thiouridylase mnmA [Listeria monocytogenes str.
Scott A]
gi|378753206|gb|EHY63791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J1-208]
gi|384391008|gb|AFH80078.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes
07PF0776]
gi|404219056|emb|CBY70420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes ATCC 19117]
gi|404221932|emb|CBY73295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2378]
gi|404224870|emb|CBY76232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2540]
gi|404227706|emb|CBY49111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2755]
gi|404245863|emb|CBY04088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361315|emb|CBY67588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes L312]
gi|424013571|emb|CCO64111.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes serotype
4b str. LL195]
Length = 371
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 202/372 (54%), Gaps = 24/372 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETGDFLGKHW 254
R+ A + L ++KDS GICF+G+ F +F++ ++ GEM + G+ LGKH
Sbjct: 180 REIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTL-----NGEVLGKHD 234
Query: 255 GFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
G +YTIGQR GL + G PW+VV KD+K NV+FV + ++ + + +
Sbjct: 235 GLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTN 294
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
E+ ++C + + + + EDG A V ++ + + GQ FY G
Sbjct: 295 --AEKPKTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGD 349
Query: 373 RCIGSGVILESW 384
C+G G I W
Sbjct: 350 ICLGGGTIDTVW 361
>gi|22125693|ref|NP_669116.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis KIM10+]
gi|45441579|ref|NP_993118.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis biovar Microtus
str. 91001]
gi|51596752|ref|YP_070943.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP
32953]
gi|108807881|ref|YP_651797.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Antiqua]
gi|108812155|ref|YP_647922.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Nepal516]
gi|145599092|ref|YP_001163168.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Pestoides F]
gi|149366398|ref|ZP_01888432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis CA88-4125]
gi|162421419|ref|YP_001607233.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Angola]
gi|165925423|ref|ZP_02221255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Orientalis str. F1991016]
gi|165938528|ref|ZP_02227085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Orientalis str. IP275]
gi|166008070|ref|ZP_02228968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Antiqua str. E1979001]
gi|166211105|ref|ZP_02237140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Antiqua str. B42003004]
gi|167401703|ref|ZP_02307194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167421866|ref|ZP_02313619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167426312|ref|ZP_02318065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Mediaevalis str. K1973002]
gi|167470788|ref|ZP_02335492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis FV-1]
gi|170023961|ref|YP_001720466.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis
YPIII]
gi|186895819|ref|YP_001872931.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis
PB1/+]
gi|218928774|ref|YP_002346649.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis CO92]
gi|229841625|ref|ZP_04461783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229843742|ref|ZP_04463885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Orientalis str. India 195]
gi|229894486|ref|ZP_04509668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis Pestoides A]
gi|229902476|ref|ZP_04517595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis Nepal516]
gi|270490345|ref|ZP_06207419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis KIM D27]
gi|294504164|ref|YP_003568226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis Z176003]
gi|384122685|ref|YP_005505305.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis D106004]
gi|384126550|ref|YP_005509164.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis D182038]
gi|384140473|ref|YP_005523175.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis A1122]
gi|384414277|ref|YP_005623639.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Yersinia pestis biovar Medievalis str. Harbin 35]
gi|420546400|ref|ZP_15044392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-01]
gi|420551720|ref|ZP_15049148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-02]
gi|420557266|ref|ZP_15054038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-03]
gi|420562806|ref|ZP_15058918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-04]
gi|420567819|ref|ZP_15063460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-05]
gi|420573511|ref|ZP_15068620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-06]
gi|420578777|ref|ZP_15073394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-07]
gi|420584160|ref|ZP_15078285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-08]
gi|420589324|ref|ZP_15082934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-09]
gi|420594642|ref|ZP_15087721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-10]
gi|420600319|ref|ZP_15092792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-11]
gi|420605785|ref|ZP_15097691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-12]
gi|420611154|ref|ZP_15102541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-13]
gi|420616469|ref|ZP_15107228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-14]
gi|420621847|ref|ZP_15111992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-15]
gi|420626883|ref|ZP_15116562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-16]
gi|420632092|ref|ZP_15121258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-19]
gi|420637209|ref|ZP_15125845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-25]
gi|420642766|ref|ZP_15130881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-29]
gi|420647944|ref|ZP_15135599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-32]
gi|420653588|ref|ZP_15140671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-34]
gi|420659098|ref|ZP_15145623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-36]
gi|420664389|ref|ZP_15150355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-42]
gi|420669355|ref|ZP_15154865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-45]
gi|420674675|ref|ZP_15159707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-46]
gi|420680232|ref|ZP_15164736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-47]
gi|420685507|ref|ZP_15169456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-48]
gi|420690683|ref|ZP_15174032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-52]
gi|420696496|ref|ZP_15179123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-53]
gi|420701975|ref|ZP_15183729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-54]
gi|420707817|ref|ZP_15188573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-55]
gi|420713181|ref|ZP_15193382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-56]
gi|420718607|ref|ZP_15198122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-58]
gi|420724170|ref|ZP_15202928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-59]
gi|420729774|ref|ZP_15207944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-60]
gi|420734824|ref|ZP_15212506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-61]
gi|420740288|ref|ZP_15217427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-63]
gi|420745755|ref|ZP_15222176.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-64]
gi|420751433|ref|ZP_15227092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-65]
gi|420756826|ref|ZP_15231683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-66]
gi|420762541|ref|ZP_15236425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-71]
gi|420767808|ref|ZP_15241176.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-72]
gi|420772782|ref|ZP_15245650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-76]
gi|420778227|ref|ZP_15250492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-88]
gi|420783786|ref|ZP_15255359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-89]
gi|420789069|ref|ZP_15260042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-90]
gi|420794549|ref|ZP_15264983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-91]
gi|420799664|ref|ZP_15269582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-92]
gi|420805011|ref|ZP_15274401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-93]
gi|420810297|ref|ZP_15279175.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-94]
gi|420815962|ref|ZP_15284265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-95]
gi|420821158|ref|ZP_15288956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-96]
gi|420826248|ref|ZP_15293514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-98]
gi|420832004|ref|ZP_15298720.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-99]
gi|420836842|ref|ZP_15303082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-100]
gi|420841999|ref|ZP_15307755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-101]
gi|420847638|ref|ZP_15312838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-102]
gi|420853082|ref|ZP_15317586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-103]
gi|420858563|ref|ZP_15322287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-113]
gi|421763105|ref|ZP_16199902.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis INS]
gi|24638321|sp|Q8ZFQ5.1|MNMA_YERPE RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|73920130|sp|Q669Q4.1|MNMA_YERPS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|122980130|sp|Q1CI58.1|MNMA_YERPN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|123245748|sp|Q1C6S0.1|MNMA_YERPA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205828988|sp|B2K711.1|MNMA_YERPB RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205828989|sp|A9R0L5.1|MNMA_YERPG RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205828990|sp|A4TLN3.1|MNMA_YERPP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205828991|sp|B1JI67.1|MNMA_YERPY RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|21958608|gb|AAM85367.1|AE013782_8 hypothetical protein y1799 [Yersinia pestis KIM10+]
gi|45436440|gb|AAS61995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Microtus str. 91001]
gi|51590034|emb|CAH21668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pseudotuberculosis IP 32953]
gi|108775803|gb|ABG18322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis Nepal516]
gi|108779794|gb|ABG13852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis Antiqua]
gi|115347385|emb|CAL20283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis CO92]
gi|145210788|gb|ABP40195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis Pestoides F]
gi|149290772|gb|EDM40847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis CA88-4125]
gi|162354234|gb|ABX88182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis Angola]
gi|165913643|gb|EDR32263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Orientalis str. IP275]
gi|165922532|gb|EDR39683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Orientalis str. F1991016]
gi|165992452|gb|EDR44753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Antiqua str. E1979001]
gi|166208285|gb|EDR52765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Antiqua str. B42003004]
gi|166960351|gb|EDR56372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167048808|gb|EDR60216.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167054667|gb|EDR64471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Mediaevalis str. K1973002]
gi|169750495|gb|ACA68013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pseudotuberculosis YPIII]
gi|186698845|gb|ACC89474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pseudotuberculosis PB1/+]
gi|229680522|gb|EEO76619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis Nepal516]
gi|229689350|gb|EEO81413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Orientalis str. India 195]
gi|229694088|gb|EEO84136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229703505|gb|EEO90522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis Pestoides A]
gi|262362281|gb|ACY59002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis D106004]
gi|262366214|gb|ACY62771.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis D182038]
gi|270338849|gb|EFA49626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis KIM D27]
gi|294354623|gb|ADE64964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis Z176003]
gi|320014781|gb|ADV98352.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342855602|gb|AEL74155.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis A1122]
gi|391427859|gb|EIQ89899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-01]
gi|391429339|gb|EIQ91201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-02]
gi|391430800|gb|EIQ92469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-03]
gi|391443458|gb|EIR03773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-04]
gi|391444762|gb|EIR04953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-05]
gi|391447833|gb|EIR07707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-06]
gi|391460313|gb|EIR19028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-07]
gi|391461298|gb|EIR19915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-08]
gi|391463296|gb|EIR21715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-09]
gi|391476394|gb|EIR33515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-10]
gi|391478147|gb|EIR35098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-11]
gi|391478281|gb|EIR35217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-12]
gi|391492327|gb|EIR47808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-13]
gi|391493179|gb|EIR48557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-15]
gi|391495570|gb|EIR50652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-14]
gi|391508337|gb|EIR62088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-19]
gi|391508365|gb|EIR62114.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-16]
gi|391513132|gb|EIR66383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-25]
gi|391523550|gb|EIR75854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-29]
gi|391526264|gb|EIR78315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-34]
gi|391527056|gb|EIR79014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-32]
gi|391539363|gb|EIR90092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-36]
gi|391541905|gb|EIR92414.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-42]
gi|391543164|gb|EIR93522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-45]
gi|391557008|gb|EIS06042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-46]
gi|391557455|gb|EIS06447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-47]
gi|391558761|gb|EIS07615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-48]
gi|391572332|gb|EIS19576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-52]
gi|391572878|gb|EIS20049.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-53]
gi|391582585|gb|EIS28331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-54]
gi|391584728|gb|EIS30218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-55]
gi|391588028|gb|EIS33114.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-56]
gi|391601037|gb|EIS44498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-58]
gi|391601633|gb|EIS45039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-60]
gi|391603267|gb|EIS46473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-59]
gi|391615964|gb|EIS57679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-61]
gi|391616719|gb|EIS58340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-63]
gi|391622477|gb|EIS63390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-64]
gi|391627979|gb|EIS68126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-65]
gi|391639209|gb|EIS77927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-71]
gi|391639547|gb|EIS78214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-66]
gi|391641433|gb|EIS79845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-72]
gi|391651275|gb|EIS88469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-76]
gi|391656532|gb|EIS93157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-88]
gi|391660988|gb|EIS97083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-89]
gi|391664440|gb|EIT00167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-90]
gi|391671303|gb|EIT06263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-91]
gi|391682111|gb|EIT16017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-93]
gi|391683515|gb|EIT17280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-92]
gi|391684348|gb|EIT18037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-94]
gi|391695961|gb|EIT28493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-95]
gi|391699351|gb|EIT31552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-96]
gi|391700781|gb|EIT32851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-98]
gi|391709829|gb|EIT40968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-99]
gi|391716771|gb|EIT47198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-100]
gi|391717453|gb|EIT47814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-101]
gi|391728268|gb|EIT57399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-102]
gi|391731075|gb|EIT59821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-103]
gi|391735679|gb|EIT63795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pestis PY-113]
gi|411177311|gb|EKS47326.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis INS]
Length = 371
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 212/387 (54%), Gaps = 34/387 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDGKSRLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KF +F+ R++ G I+ + G +GKH G +
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQLVGKHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KD+ +N + V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGGDDPWYVVDKDLDSNTLLVAQGH----EHPRLMSVGLVAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + ++D E + V+ + + GQ A F
Sbjct: 295 WVDRQPVTAPFRCVVKTRYRQQDIPCT--VTPLDD--ERVD-VRFDDPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVILESWDDQGFPVCEKA 395
YQG C+G G+I +Q +P+ A
Sbjct: 350 YQGEICLGGGII-----EQRYPLTNPA 371
>gi|167623646|ref|YP_001673940.1| tRNA-specific 2-thiouridylase MnmA [Shewanella halifaxensis
HAW-EB4]
gi|189040508|sp|B0TQ02.1|MNMA_SHEHH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|167353668|gb|ABZ76281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella halifaxensis HAW-EB4]
Length = 371
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 205/390 (52%), Gaps = 37/390 (9%)
Query: 2 TQIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENF 61
T IEP +L G KV V +SGGVDSSV+ LL G+ ++K W ++D + +
Sbjct: 2 TSIEPTHL--------GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY 53
Query: 62 WTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTR 121
C +D+K A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN
Sbjct: 54 ---CAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKE 110
Query: 122 IKFGAFMD-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQ 180
IKF AF++ A ++ DY+A GHY + + + D KDQ+YFL L
Sbjct: 111 IKFKAFLEFADEILDADYIAMGHYVRRRDIDGTSQMLRGI-----DGNKDQSYFLYTLGH 165
Query: 181 AQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGV 240
Q+ R +FP+G + K EVR+ A + L D+KDS GICF+G+ KF++F+ + G
Sbjct: 166 EQVARSLFPVGELEKSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLPAQPGN 225
Query: 241 ILEAETGDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYS 294
I E G+ +G H G ++T+GQR+GL + G PWYVVEKD+ NV+ V +
Sbjct: 226 I-ETSEGEVIGTHQGLMYHTLGQRKGLGIGGLKNSNEDPWYVVEKDLVRNVLIVGQG--- 281
Query: 295 FDKKRRLFRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAV 350
RL G L W+ P + S + K R+ C + + ++I
Sbjct: 282 -GNHPRLMSNGLIANQLHWVDRKGPADGSNITVKTRYRQQDVPCRVTYD-----SDDILR 335
Query: 351 VQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
V E + GQ A FY G C+G G+I
Sbjct: 336 VIFDEPVAAVTPGQSAVFYDGEICLGGGII 365
>gi|212638582|ref|YP_002315102.1| tRNA-specific 2-thiouridylase MnmA [Anoxybacillus flavithermus WK1]
gi|212560062|gb|ACJ33117.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
[Anoxybacillus flavithermus WK1]
Length = 371
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 206/363 (56%), Gaps = 16/363 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W D EN C ED + VC+
Sbjct: 9 RVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVVRVCN 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW+ V +Y ++EY+ GRTPNPDV+CN IKF AF++ ++ DY+
Sbjct: 66 QIGIPYYAVNFEKQYWEKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAMALGADYL 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EY+ L D KDQTYFL+ L QAQL +++FP+G + K +VR
Sbjct: 126 ATGHYARVAYR--DGEYQ---LLRGLDANKDQTYFLNQLGQAQLSKVLFPIGELQKSKVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS GICF+G+ F +F++ ++ G ++ G+ G H G +Y
Sbjct: 181 EIAKEAGLATAGKKDSTGICFIGERNFKQFLSNYLPAQPGE-MQTLDGEVKGTHDGLMYY 239
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+VV K++K+N+++V++ + + ++ W+S P E
Sbjct: 240 TIGQRHGLGIGGSGEPWFVVGKNLKDNILYVAQGFDNELLYSDAIIATNVNWVSDRKPNE 299
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
K R+ + + +E ++ E A V S+ + + GQ FY G +C+G
Sbjct: 300 PIACTAKFRYRQP--DVPVTVEMID---ETTARVSFSQRVRAVTPGQAVVFYNGEQCLGG 354
Query: 378 GVI 380
G I
Sbjct: 355 GTI 357
>gi|33519851|ref|NP_878683.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Blochmannia
floridanus]
gi|81657434|sp|Q7U353.1|MNMA_BLOFL RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|33504196|emb|CAD83458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Blochmannia floridanus]
Length = 369
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 205/372 (55%), Gaps = 21/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL G+ ++K W +D + + C EED+ A ++C+
Sbjct: 3 KVIVGISGGVDSSVAAWLLQQQGYLVEGLFMKNWENDDEKEY---CSSEEDLSDAWSICN 59
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
+ +PL V+ EYW+NV ++ Y+ G TPNPDVLCN IKF F+D A+ + D+
Sbjct: 60 TLKIPLHTVNFAQEYWENVFQVFLQAYQSGFTPNPDVLCNKEIKFKHFLDFALEDLGADF 119
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + ++ K L D+ KDQ+YFL L+Q QLKR +FP+G ++K V
Sbjct: 120 IATGHYVRCMNVK-----KKITLMKGIDQNKDQSYFLYTLNQQQLKRCLFPIGSLTKLTV 174
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + +L ++KDS GICF+GK F F++ +I G I+ G+ LG H G F
Sbjct: 175 RKIAKELNLITANKKDSTGICFIGKRNFRSFLSNYIAIQPGDIINIH-GNKLGLHQGIPF 233
Query: 259 YTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YTIGQR+GL + G PWYVV+K++ +NV+ V++ R+F V + W+ G
Sbjct: 234 YTIGQRKGLNIGGISNGNGKPWYVVDKNITHNVLIVAQGINHPCLMSRIFIVQKIFWIKG 293
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ + K+R+ C + V+ + L + +A GQ A FY
Sbjct: 294 NILKSPIQCSVKIRYQQSDVQCQIYPISVDT-----LKIILKQPVTAIAPGQSAVFYIKK 348
Query: 373 RCIGSGVILESW 384
CIG G I++ +
Sbjct: 349 HCIGGGTIIKRF 360
>gi|350531850|ref|ZP_08910791.1| tRNA-specific 2-thiouridylase MnmA [Vibrio rotiferianus DAT722]
Length = 374
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPENGEKPQMLR-GLDGNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ +++ G I E G+ +G+H G +
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGDI-ETPEGEVIGQHQGLMY 240
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD++ NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 301 DREPIRDVMKCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYK 355
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 356 DDVCLGGGII 365
>gi|345298835|ref|YP_004828193.1| tRNA-specific 2-thiouridylase mnmA [Enterobacter asburiae LF7a]
gi|345092772|gb|AEN64408.1| tRNA-specific 2-thiouridylase mnmA [Enterobacter asburiae LF7a]
Length = 389
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 215/389 (55%), Gaps = 31/389 (7%)
Query: 3 QIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFW 62
+++ R S S QK KV V +SGGVDSSV+ LL G+ ++K W ++D E +
Sbjct: 12 EVQCREYSMSDNSQK--KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY- 68
Query: 63 TECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRI 122
C D+ A+AVCD++ + L V+ EYW NV +EEY+ GRTPNPD+LCN I
Sbjct: 69 --CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEI 126
Query: 123 KFGAFMD-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQA 181
KF AF++ A + DY+A+GHY + AD K +L D KDQ+YFL LS
Sbjct: 127 KFKAFLEFAAEDLGADYIATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHE 181
Query: 182 QLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVI 241
Q+ + +FP+G + K EVRK A + DL +KDS GICF+G+ KF EF+ R++ G I
Sbjct: 182 QIAQSLFPVGELEKPEVRKIAEELDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKI 241
Query: 242 LEAETGDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSF 295
+ + G+ +G+H G ++T+GQR+GL + G PWYVV+KDV+NN++ V++ +
Sbjct: 242 VTVD-GEEIGQHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH--- 297
Query: 296 DKKRRLFRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVV 351
RL VG L W+ P R K R+ C + ++D + V
Sbjct: 298 -DHPRLMSVGLIAQQLHWVDREPVTGTLRCTVKTRYRQTDIPCT--VTALDD---DRIEV 351
Query: 352 QLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
+ E + GQ A FY G C+G G+I
Sbjct: 352 RFDEPVAAVTPGQSAVFYSGEICLGGGII 380
>gi|429090420|ref|ZP_19153152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter universalis NCTC 9529]
gi|426510223|emb|CCK18264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cronobacter universalis NCTC 9529]
Length = 369
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E++ C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDVIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P K R+ C + ++D + I V+ E + GQ A F
Sbjct: 295 WVDREPVAAPFTCTVKTRYRQVDIPCT--VRPLDD--DRIEVL-FDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YLGEVCLGGGII 361
>gi|335042529|ref|ZP_08535556.1| putative tRNA methyltransferase [Methylophaga aminisulfidivorans
MP]
gi|333789143|gb|EGL55025.1| putative tRNA methyltransferase [Methylophaga aminisulfidivorans
MP]
Length = 367
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 197/370 (53%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V LSGGVDSSVA LL ++K W DF + +EC EED K A +V +
Sbjct: 6 KVVVGLSGGVDSSVAALLLKQQFDHVEGLFMKNWV--DFAD-ESECTVEEDRKDASSVAE 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
V +P + EYW V + ++EYR GRTPNPD+LCN IKF F+D + D +
Sbjct: 63 TVGIPFHEANFAMEYWDYVFKHFLDEYRAGRTPNPDILCNREIKFKTFLDHAIELGGDII 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + L +D KDQ+YFL L Q QL R FPLG + K EVR
Sbjct: 123 ATGHYARVEERNGQFH-----LLKGQDHKKDQSYFLYTLGQEQLSRTRFPLGDLPKTEVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q N D+KDS GICF+G+ F EF++R+I G + E G+ +G H G +Y
Sbjct: 178 RIAEQAGFINHDKKDSTGICFIGERHFREFLSRYIPAQPGEMRTPE-GEIIGDHAGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + G PW+V KD+ N +++V + + + + L L W++G
Sbjct: 237 TLGQRQGLGIGGRKDSTGEPWFVAGKDMDNQILYVVQGDHPWLWSQNLV-AEELSWVAGH 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PPE R K R+ C + +D NI V+ E + + GQ FY
Sbjct: 296 PPEFPCRAAAKTRYRQPDQACTI----TQDDNGNIH-VEFDEKQRAVTPGQSVVFYLDDD 350
Query: 374 CIGSGVILES 383
C+G G+I+ +
Sbjct: 351 CLGGGIIVST 360
>gi|256826638|ref|YP_003150597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cryptobacterium curtum DSM 15641]
gi|256582781|gb|ACU93915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cryptobacterium curtum DSM 15641]
Length = 394
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 202/367 (55%), Gaps = 19/367 (5%)
Query: 15 HQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYA 74
HQ+ +V V LSGGVDSSV LL G Y+K W + CPW +D+ A
Sbjct: 45 HQRIPRVLVGLSGGVDSSVCAALLVETGWDVCGAYMKNWT---MDVPGMRCPWADDLADA 101
Query: 75 KAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSM 134
K V ++ + V + Y + VV Y+++EYR GRTPNPDV+CN ++KFG F DA
Sbjct: 102 KRVAVRLGIDFRVYDFQEAYKREVVDYLVDEYRAGRTPNPDVMCNQQVKFGLFFDAAQDD 161
Query: 135 EFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
FDY+A+GHYA+ H P L + D KDQTYFL +S + IFPLG +
Sbjct: 162 GFDYIATGHYARASHD-------PVRLLRAADTHKDQTYFLYRMSSDAVAHTIFPLGGLL 214
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K +VR A Q +L + DSQGICF+G+ +F++ ++ G I++ +TG+ +G H
Sbjct: 215 KTQVRAAAEQRNLSTAHKADSQGICFVGEAGICDFLSLYVHPQPGPIIDDDTGETVGYHD 274
Query: 255 GFWFYTIGQRQGLRLPGGPWY-VVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
G F+TIGQR GL + GG Y VV KD+ +N+++V + + L + ++W++ +
Sbjct: 275 GAIFFTIGQRHGLGIGGGRRYRVVRKDMDHNILYVHDGPLA-PVQDSLLELDRVRWIADV 333
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP+E + C+VR ++ ++ A VQL D +A+GQ Y+G
Sbjct: 334 PPQEGA---CEVR----THHGEKLLAATLLATATTATVQLEADHDAVASGQSVVIYRGQE 386
Query: 374 CIGSGVI 380
C+G G++
Sbjct: 387 CLGGGIV 393
>gi|392957292|ref|ZP_10322816.1| tRNA-specific 2-thiouridylase MnmA [Bacillus macauensis ZFHKF-1]
gi|391876699|gb|EIT85295.1| tRNA-specific 2-thiouridylase MnmA [Bacillus macauensis ZFHKF-1]
Length = 375
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 201/365 (55%), Gaps = 15/365 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W +D + F C ED AV +
Sbjct: 13 RVVIGMSGGVDSSVAALLLKQQGYDVIGIFMKNW--DDTDEFGV-CTATEDYNDVIAVAN 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EYW V +Y +EEY+ GRTPNPDV+CN IKF AF+D S+ DYV
Sbjct: 70 QIGIPYYAVNFEKEYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLDHAMSLGADYV 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ D+E ++L D KDQTYFL+ LSQ Q+ +++FP+G ++K E+R
Sbjct: 130 ATGHYARI---GEDEEGLVTMLR-GVDANKDQTYFLNQLSQDQISKVLFPIGELNKPEIR 185
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A + L +KDS GICF+G+ F EF++ ++ G + + G GKH G +Y
Sbjct: 186 KIAEEAGLATAKKKDSTGICFIGERDFKEFLSNYLPAKPGNMTTLD-GAVKGKHDGLMYY 244
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+VV KD+ +N ++V + + WLS P E
Sbjct: 245 TIGQRHGLGIGGSGEPWFVVGKDLASNTLYVEQGFDHDSLYSDRLIAEEPSWLSSKPLEG 304
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K R+ + + + +EDG ++VV E + + GQ FY G C+G
Sbjct: 305 SKKCTAKFRYRQP--DKGVTVTTMEDG--RLSVV-FDEPQRAITPGQAVVFYDGDVCLGG 359
Query: 378 GVILE 382
I E
Sbjct: 360 ATIDE 364
>gi|256544685|ref|ZP_05472057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus vaginalis ATCC 51170]
gi|256399574|gb|EEU13179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus vaginalis ATCC 51170]
Length = 369
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 218/370 (58%), Gaps = 31/370 (8%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSVA LL G+ + ++K W +ED EN C E D + A VC+Q+ +P
Sbjct: 15 VSGGVDSSVAALLLKKEGYDVSGIFMKNWDEED-EN--GVCTAEVDYEDAVKVCNQIGIP 71
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
++ EY+ V SY ++EY+ GRTPNPD++CN IKF AF+D + DY+A+GHY
Sbjct: 72 YYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADYLATGHY 131
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
A+V S + + + D KDQTYFLS LSQ Q+K ++FP+G + K+EVRK A +
Sbjct: 132 ARVDRSEGETKMLRGL-----DSNKDQTYFLSQLSQDQIKDVLFPVGDLDKKEVRKIAKE 186
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
+L D+KDS GICF+G+ F+EF++ ++ EG I++ + G+ +GKH+G ++TIGQR
Sbjct: 187 NNLATADKKDSTGICFIGERNFNEFLSNYLPAKEGNIVDTD-GNIMGKHYGLMYHTIGQR 245
Query: 265 QGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR---VGSLKWLSGLPPEEIS 319
+GL + G W+V KD++ N + V + +LF +GS LS + + +
Sbjct: 246 RGLGIGGEGEAWFVCGKDLEKNELIVCQG----KNNEKLFSNRLIGS--NLSSISKKGLK 299
Query: 320 R---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSED-DQGLAAGQFAAFYQGTRCI 375
+ CK R+ N ++ I ++DG V+++ D + + GQ A FY G C+
Sbjct: 300 KEFDCTCKFRYRQKDINSHVKI--LDDG-----RVEITYDKTKAVTPGQAAVFYDGEVCL 352
Query: 376 GSGVILESWD 385
GS +I E ++
Sbjct: 353 GSCIIDEVYN 362
>gi|258510943|ref|YP_003184377.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257477669|gb|ACV57988.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 365
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/367 (37%), Positives = 205/367 (55%), Gaps = 19/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL AG+ ++K W + D EN C E+D + + VC+
Sbjct: 4 RVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDETD-EN--GACTAEQDFEDVRRVCE 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EY + V + +EE++ GRTPNPDVLCN IKF + + DY+
Sbjct: 61 QIGIPYYGVNFEREYEERVFQHFLEEFKRGRTPNPDVLCNREIKFKELLACALDLGADYL 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V D++ ++L +DK KDQTYFL L+QA L+R +FP+G ++K EVR
Sbjct: 121 ATGHYAQV---RKDEDGTVALLR-GRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A L +KDS GICF+G+ F F+ +++ G+I + + G LG+H G +Y
Sbjct: 177 QIARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLPAQPGLIEDVD-GRVLGEHDGLMYY 235
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQR+GLRL G PW+VV+KD+ NV+ V++ + R ++ +++
Sbjct: 236 TIGQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALTADTVSFVAER 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + R K R Y + VE GE+ V E + + GQ FY G
Sbjct: 296 PPAKRFRCTAKFR-----YRQDEQPVEVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGEV 350
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 351 CLGGGII 357
>gi|365849057|ref|ZP_09389528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yokenella regensburgei ATCC 43003]
gi|364569701|gb|EHM47323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yokenella regensburgei ATCC 43003]
Length = 369
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/372 (38%), Positives = 209/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVDGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A DL +KDS GICF+G+ KF EF+ R++ G IL + G+ +G+H G +
Sbjct: 180 RKIAEALDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKILTVD-GEEIGQHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ P R K R+ C + ++D E I V+ E + GQ A F
Sbjct: 295 WVNREPLTGTLRCTVKTRYRQTDIPCT--VTAIDD--ERIE-VRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YSGEVCLGGGII 361
>gi|338997639|ref|ZP_08636333.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Halomonas sp. TD01]
gi|338765413|gb|EGP20351.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Halomonas sp. TD01]
Length = 380
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 200/374 (53%), Gaps = 24/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C +ED+ A+AVC
Sbjct: 17 KVIVGMSGGVDSSVSALLLLQQGYEVEGLFMKNWDEDDGTEY---CTAKEDLADAEAVCA 73
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF F++ + D +
Sbjct: 74 KLGIKLHTANFASEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKVFLEYAEMLGADKI 133
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + +E +P +L+ D KDQ+YFL + +A + R +FP+G + K VR
Sbjct: 134 ATGHYVR----QGIREGRPRLLK-GVDSNKDQSYFLHAVPEAAIARTLFPVGELEKPAVR 188
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A Q DL +KDS GICF+G+ +F +F+ +++ G I E GD +GKH G +Y
Sbjct: 189 ALAEQHDLITAKKKDSTGICFIGERRFRDFLQQYLPAQPGNI-ETPEGDTIGKHMGLMYY 247
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + G PWYV KD++ NV+ V + ++ W++G
Sbjct: 248 TLGQRQGLGIGGLANYSEDPWYVAAKDLERNVLIVVQGKLHHLLFTNALATENMDWVAGE 307
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQ--GLAAGQFAAFYQG 371
PP R K R+ +C I + DG V++ DD + GQ Y G
Sbjct: 308 PPAARGRYTAKTRYRQS--DCPCEIRALPDG-----TVEVVFDDPQWAVTPGQSLVLYDG 360
Query: 372 TRCIGSGVILESWD 385
C+G GVI +W+
Sbjct: 361 DICLGGGVIRATWN 374
>gi|262394626|ref|YP_003286480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio sp. Ex25]
gi|451970365|ref|ZP_21923592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio alginolyticus E0666]
gi|262338220|gb|ACY52015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio sp. Ex25]
gi|451933879|gb|EMD81546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio alginolyticus E0666]
Length = 374
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + S D KP++L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVR--RSFPDNGEKPAMLR-GLDGNKDQSYFLYTLSHEQIGRSLFPVGDLEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F+ R++ G I E G+ +G+H G +
Sbjct: 182 RRIAEEQGLVTAKKKDSTGICFIGERKFTDFLGRYLPAQPGNI-ETPEGEVIGQHQGLMY 240
Query: 259 YTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V EKD++ NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGRKGGGGNEEPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P ++ + K R+ C ++ ++D ENI V+ E + GQ A FY+
Sbjct: 301 DREPIRDVMKCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYK 355
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 356 DDVCLGGGII 365
>gi|373851967|ref|ZP_09594767.1| tRNA-specific 2-thiouridylase mnmA [Opitutaceae bacterium TAV5]
gi|372474196|gb|EHP34206.1| tRNA-specific 2-thiouridylase mnmA [Opitutaceae bacterium TAV5]
Length = 394
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/398 (36%), Positives = 208/398 (52%), Gaps = 37/398 (9%)
Query: 10 SCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE 69
S P G KV V +SGGVDSSVA LL AG Y+K W ED N CPW++
Sbjct: 4 SAPQPESSG-KVLVAMSGGVDSSVAALLLKRAGVPIEGAYMKNWINED--NIIGHCPWQQ 60
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D++ A+ V DQ+D+P VV+L +EY + VV+Y+++ YR G TPNPDV+CN IKFG F
Sbjct: 61 DIEDARRVADQLDIPFRVVNLMEEYRERVVAYLLDGYRRGLTPNPDVMCNREIKFGVFRA 120
Query: 130 AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFP 189
F VA+GHYA+ V A + L D KDQ+YFL+ LSQ QL FP
Sbjct: 121 WARDHGFTAVATGHYARRV---ALPDAAGWALHEGADGNKDQSYFLALLSQEQLADARFP 177
Query: 190 LGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDF 249
+G I K +R+ A + L D+KDSQGICF+G++K +F+ +++ + G I+ A G
Sbjct: 178 IGDIEKPGLRRLAREAGLATADKKDSQGICFIGEVKMQDFLRQYVPDQPGPIIRATDGRV 237
Query: 250 LGKHWGFWFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLF--- 302
LG+H G ++T+GQR+G+ +P + V K +N + V+ + LF
Sbjct: 238 LGEHRGLHYFTMGQRKGIGIPSNTDNKAYVVTGKRSADNALLVA---FDAPDAPGLFQNE 294
Query: 303 -RVGSLKW-----LSGLPPEEISRLQCK-----VRHGPGFY----------NCNLMIEHV 341
R+ SL+W L+ + P L + P F + +
Sbjct: 295 VRIHSLQWNTPGGLAPVLPAASGPLAAADDTTGQTNAPAFALEGRVRYRDPRVPIALIPT 354
Query: 342 EDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGV 379
GE A V+ + +GLA+GQ A ++G R +G GV
Sbjct: 355 PGSGEGTARVRFATPQRGLASGQILALHEGPRLLGGGV 392
>gi|227486632|ref|ZP_03916948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus lactolyticus ATCC 51172]
gi|227235344|gb|EEI85359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus lactolyticus ATCC 51172]
Length = 367
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 211/387 (54%), Gaps = 39/387 (10%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +K +KV V +SGGVDSSVA LL G+ T ++K W D F C EED +
Sbjct: 1 MTDKKDIKVIVGISGGVDSSVAALLLKEEGYDVTGIFMKNWDDTDENGF---CTAEEDFE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
A AVC+Q+ +P ++ EY+ V SY ++EY+ GRTPNPD++CN IKF AF+D
Sbjct: 58 DAVAVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAK 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A+GHYA+V + + + + D KDQTYFLS LSQ Q+K ++FP+G
Sbjct: 118 NLGADYLATGHYARVDRTDGETKMLRGL-----DNNKDQTYFLSQLSQEQIKDVLFPVGD 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L ++KDS GICF+G+ F+EF++ ++ G I++ E G +GK
Sbjct: 173 LQKSEVREIAKKAGLATANKKDSTGICFIGERDFNEFLSHYLPAQPGNIVDTE-GHIMGK 231
Query: 253 HWGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSR---NYYSFDKKRRLFRVGSL 307
H G ++TIGQR+GL + G W+V KD++ N + V + N F K
Sbjct: 232 HDGLMYHTIGQRRGLGIGGEGEAWFVYGKDLEKNELLVCQGKNNPLLFSNK--------- 282
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIE--------HVEDGGENIAVVQLSEDDQG 359
L G IS +C P ++C HV+ G+ V + +
Sbjct: 283 --LYGSEFSTISDKEC-----PKEFDCTAKFRYRQADIKAHVKVLGDGKVEVTYDK-TKA 334
Query: 360 LAAGQFAAFYQGTRCIGSGVILESWDD 386
+ GQ A FY G C+GS +I E + D
Sbjct: 335 VTPGQAAVFYDGEVCLGSAIIDEVYMD 361
>gi|89094503|ref|ZP_01167442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Neptuniibacter caesariensis]
gi|89081239|gb|EAR60472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Oceanospirillum sp. MED92]
Length = 371
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 204/367 (55%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C +ED+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSALLLMQQGYQVEGLFMKNWDEDDGTEY---CTAKEDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ + D++
Sbjct: 70 KLGIHLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYAVELGADFI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D++ K +L+ D KDQ+YFL + Q ++++ +FP+G + K VR
Sbjct: 130 ATGHYVR----RGDRDGKTRLLK-GLDNNKDQSYFLHQVGQLEIEKTLFPVGELEKPAVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A + DL ++KDS GICF+G+ +FS+F+ +++ G I E GD +G+H G +Y
Sbjct: 185 KLAEEHDLVTHNKKDSTGICFIGERRFSDFLKQYLPAQPGKI-ETPNGDVIGEHAGLMYY 243
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL++ P PW+V KD+ NV+ + + L W++G
Sbjct: 244 TIGQRQGLQIGGLKDYPEEPWFVGAKDLDRNVLIAVQGKQNDLLFTDWLTADELFWINGE 303
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P+ + KVR+ C +E GE+ + +E + + GQ YQ
Sbjct: 304 EPQLPYQCTAKVRYRQSDQGC-----IIERHGESGYRIVFNEPQRAITPGQSVVIYQDDI 358
Query: 374 CIGSGVI 380
C+G GVI
Sbjct: 359 CLGGGVI 365
>gi|345869547|ref|ZP_08821504.1| tRNA-specific 2-thiouridylase mnmA [Thiorhodococcus drewsii AZ1]
gi|343922930|gb|EGV33627.1| tRNA-specific 2-thiouridylase mnmA [Thiorhodococcus drewsii AZ1]
Length = 368
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 197/368 (53%), Gaps = 22/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++ V LSGGVDS+VA LL GH A ++K W ++D E + C ED+ A+AV +
Sbjct: 12 RIIVGLSGGVDSAVAAHLLKEEGHEVEALFMKNWEEDDEEGY---CAAAEDLADARAVAE 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++D+ L V+ EYW +V Y + EYR RTPNPDVLCN IKF AF+D + + +
Sbjct: 69 RLDIRLHTVNFATEYWDHVFEYFLAEYRALRTPNPDVLCNREIKFAAFLDHALGLGAEAI 128
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ Q L D+ KDQTYFL L+Q+QL FPL I+K EVR
Sbjct: 129 ATGHYARLTRDENGQH-----LRCCADEGKDQTYFLHLLNQSQLASAYFPLADITKPEVR 183
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A L N +KDS GICF+G+ +F +F+ R + G I E G LG+H G +Y
Sbjct: 184 RIARDLGLANAQKKDSTGICFIGERRFKDFLERFLPRDPGPI-ETPEGVQLGEHQGLAYY 242
Query: 260 TIGQRQGLRLPG------GPWYVVEKDV-KNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
TIGQRQGL + G PWYV KDV +N +V V + + L + W+SG
Sbjct: 243 TIGQRQGLGIGGIAGGREAPWYVAVKDVAQNRLVVVQDDAHPLLMSNELHALRP-HWISG 301
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P+ R + ++RH C L+ V+ G V + + GQ FY G
Sbjct: 302 QAPQTPYRCRARLRHRQPLQPCTLL--EVDATG---CRVGFDAPQRAITPGQSVVFYDGD 356
Query: 373 RCIGSGVI 380
C+G VI
Sbjct: 357 ECLGGAVI 364
>gi|261339434|ref|ZP_05967292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter cancerogenus ATCC 35316]
gi|288318240|gb|EFC57178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter cancerogenus ATCC 35316]
Length = 370
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 180 RKIAEALDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDEIGQHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + R K R+ C + ++D + V+ E + GQ A F
Sbjct: 295 WVDREPVKGTLRCTVKTRYRQTDIPCT--VTALDD---DRIDVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YSGEICLGGGII 361
>gi|300716270|ref|YP_003741073.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Erwinia billingiae Eb661]
gi|299062106|emb|CAX59222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erwinia billingiae Eb661]
Length = 367
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAEDLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A + D+
Sbjct: 64 KLGIYLHTVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL L Q+ + +FP+G ++K +V
Sbjct: 124 IATGHYVR----RQDVDGKSRLLR-GLDDNKDQSYFLYTLGHEQIAQSLFPVGELAKPDV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + +L +KDS GICF+G+ KF +F+ R++ G IL AE G+ +G+H G +
Sbjct: 179 RRIAEELELITAKKKDSTGICFIGERKFRDFLGRYLPAQPGPILNAE-GEVVGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKAGSEEPWYVVDKDVANNILVVAQGH----EHPRLMSVGLVAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ R K R+ C V GE+ V+ E + GQ A F
Sbjct: 294 WVDREILTAPLRCTVKTRYRQADIPCT-----VTPLGEDRIEVRFDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 349 YLDEICLGGGII 360
>gi|377576025|ref|ZP_09805009.1| tRNA-specific 2-thiouridylase MnmA [Escherichia hermannii NBRC
105704]
gi|377542057|dbj|GAB50174.1| tRNA-specific 2-thiouridylase MnmA [Escherichia hermannii NBRC
105704]
Length = 368
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 209/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIVLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 124 IATGHYVR----RADIDGKSRLLR-GVDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPEV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RRIAEELDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGSEEPWYVVDKDVANNILVVAQGH----DHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P E R K R+ C ++ ++D + V+ E + GQ A F
Sbjct: 294 WVDREPVRETVRCTVKTRYRQTDIPCTVV--PLDD---DRIEVRFDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
YQG C+G G+I
Sbjct: 349 YQGDICLGGGII 360
>gi|296102847|ref|YP_003612993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295057306|gb|ADF62044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 370
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 180 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIVTVD-GDEIGQHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + R K R+ C I ++D + V+ E + GQ A F
Sbjct: 295 WVDREPLKGTLRCTVKTRYRQTDIPCT--ITALDD---DRIDVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YSGDICLGGGII 361
>gi|228917030|ref|ZP_04080590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228842637|gb|EEM87725.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 376
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 207/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ + N + + D EN + E + + GQ FY
Sbjct: 298 SNEAKEKEFKCTAKFRYRQ---DDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|205822022|sp|A8H5M1.2|MNMA_SHEPA RecName: Full=tRNA-specific 2-thiouridylase MnmA
Length = 371
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 206/390 (52%), Gaps = 37/390 (9%)
Query: 2 TQIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENF 61
T IEP +L G KV V +SGGVDSSV+ LL G+ ++K W ++D + +
Sbjct: 2 TSIEPTHL--------GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY 53
Query: 62 WTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTR 121
C +D+K A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN
Sbjct: 54 ---CAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKE 110
Query: 122 IKFGAFMD-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQ 180
IKF AF++ A ++ DY+A GHY + + V D KDQ+YFL L
Sbjct: 111 IKFKAFLEFADEILDADYIAMGHYVRRRDIDGTSQMLRGV-----DGNKDQSYFLYTLGY 165
Query: 181 AQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGV 240
Q+ R +FP+G + K EVR+ A + L D+KDS GICF+G+ KF++F+ + G
Sbjct: 166 EQVARSLFPVGELDKSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLPAQPGN 225
Query: 241 ILEAETGDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYS 294
I E G+ +G H G ++T+GQR+GL + G PWYVVEKD+ NV+ V +
Sbjct: 226 I-ETSEGEVIGTHQGLMYHTLGQRKGLGIGGLKNSNDDPWYVVEKDLVRNVLIVGQG--- 281
Query: 295 FDKKRRLFRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAV 350
RL G L W+ P S++ K R+ C++ + +++
Sbjct: 282 -GNHPRLMSNGLVANQLHWVDRKGPANGSKITVKTRYRQQDVPCSVTYDS-----DDVLR 335
Query: 351 VQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
V E + GQ A FY G C+G G+I
Sbjct: 336 VIFDEPVAAVTPGQSAVFYDGEICLGGGII 365
>gi|152976810|ref|YP_001376327.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cytotoxicus NVH
391-98]
gi|189036217|sp|A7GT74.1|MNMA_BACCN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|152025562|gb|ABS23332.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cytotoxicus NVH 391-98]
Length = 371
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 208/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAM 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ L Q QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLGQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMAKEAGLATATKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+VV K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFVVGKNLKENILYVDQGFHNELLYGDEVIATNVNWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SDRAKEKEFKCTAKFRYRQ--EDNGVTVQIVD---ENTIRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|333394724|ref|ZP_08476543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus coryniformis subsp. coryniformis KCTC
3167]
gi|420145242|ref|ZP_14652714.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398403148|gb|EJN56417.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 374
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 203/380 (53%), Gaps = 17/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V LSGGVDS+VA LL G+ ++K W D + C ED K
Sbjct: 1 MNENANTRVVVGLSGGVDSTVAALLLKQQGYDVVGVFMKNW---DDTDEMGVCTATEDFK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
+ +Q+ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVVKIANQIGIPYYSINFEKEYWDRVFEYFLDEYKHGRTPNPDVMCNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ D + +L D KDQTYFLS LSQ QL +++FPLG
Sbjct: 118 DLGADYIATGHYARI---RRDADGTAHMLR-GVDGNKDQTYFLSQLSQNQLNKVMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A ++DL +KDS GICF+G+ F +F+++++ G ++ + G+ G
Sbjct: 174 MTKPEVREIAAKYDLATAKKKDSMGICFIGEKNFKQFLSQYLPAQPGKMMTVD-GEVKGT 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL + G PW+V+ KD+ N ++V + +++
Sbjct: 233 HDGLMYYTIGQRQGLGIGGNGTSNDPWFVIGKDLTTNTLYVGQGFHNEHLYATHLTASKF 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ + L + + K R+ + + + D + A ++ E + + GQ
Sbjct: 293 NFTTDLDRGDTFHVTAKFRYRQK--DTGVTVHMNAD--QTTATIEFDEPVRAITPGQAVV 348
Query: 368 FYQGTRCIGSGVILESWDDQ 387
Y G C+GSG I +++D+
Sbjct: 349 LYDGDECLGSGTIDAAYNDE 368
>gi|375265133|ref|YP_005022576.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sp. EJY3]
gi|369840454|gb|AEX21598.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sp. EJY3]
Length = 380
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 207/374 (55%), Gaps = 23/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSA----DQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
+A GHY + + +++ KP +L D KDQ+YFL LS Q+ R +FP+G +
Sbjct: 125 IAMGHYVRRSFPESSLPGEKQEKPQMLR-GLDSNKDQSYFLYTLSHEQVARSLFPVGDLE 183
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR+ A + L +KDS GICF+G+ KF++F+ R++ G I E G+ +G+H
Sbjct: 184 KPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLGRYLPAQPGNI-ETPEGEVIGQHQ 242
Query: 255 GFWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
G ++T+GQR+GL + G PW+V EKD++ NV+ + K
Sbjct: 243 GLMYHTLGQRKGLHIGGRKGGDGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQ 302
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P ++ + K R+ C ++ ++D ENI V+ E + GQ A
Sbjct: 303 LHWVDREPIRDVMKCTVKTRYRQQDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSA 357
Query: 367 AFYQGTRCIGSGVI 380
FY+ C+G G+I
Sbjct: 358 VFYKDDVCLGGGII 371
>gi|365970027|ref|YP_004951588.1| tRNA-specific 2-thiouridylase mnmA [Enterobacter cloacae EcWSU1]
gi|365748940|gb|AEW73167.1| tRNA-specific 2-thiouridylase mnmA [Enterobacter cloacae EcWSU1]
Length = 391
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 217/389 (55%), Gaps = 31/389 (7%)
Query: 3 QIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFW 62
+++ R S S QK KV V +SGGVDSSV+ LL G+ ++K W ++D E +
Sbjct: 14 EVQCREYSMSDNSQK--KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY- 70
Query: 63 TECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRI 122
C D+ A+AVCD++ + L V+ EYW NV +EEY+ GRTPNPD+LCN I
Sbjct: 71 --CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEI 128
Query: 123 KFGAFMD-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQA 181
KF AF++ A + DY+A+GHY + AD K +L D KDQ+YFL LS
Sbjct: 129 KFKAFLEFAAEDLGADYIATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHE 183
Query: 182 QLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVI 241
Q+ + +FP+G + K +VRK A + DL +KDS GICF+G+ KF +F+ R++ G I
Sbjct: 184 QIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKI 243
Query: 242 LEAETGDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSF 295
+ + GD +G+H G ++T+GQR+GL + G PWYVV+KDV+NN++ V++ +
Sbjct: 244 VTVD-GDEIGQHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGH--- 299
Query: 296 DKKRRLFRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVV 351
RL VG L W+ P + R K R+ C + ++D E I V
Sbjct: 300 -DHPRLMSVGLIAQQLHWVDREPLKGTLRCTVKTRYRQTDIPCT--VTALDD--ERID-V 353
Query: 352 QLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
+ E + GQ A FY G C+G G+I
Sbjct: 354 RFDEPVAAVTPGQSAVFYSGEICLGGGII 382
>gi|419328213|ref|ZP_13869839.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC12C]
gi|378174315|gb|EHX35141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC12C]
Length = 357
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 205/367 (55%), Gaps = 29/367 (7%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD++ +
Sbjct: 1 MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTATADLADAQAVCDKLGIE 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYVASGH 143
L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY+A+GH
Sbjct: 58 LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117
Query: 144 YAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFAT 203
Y + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +VRK A
Sbjct: 118 YVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172
Query: 204 QFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQ 263
L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G ++T+GQ
Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMYHTLGQ 231
Query: 264 RQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLSGL 313
R+GL + G PWYVV+KDV+NN++ V++ + + RL VG L W+
Sbjct: 232 RKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLHWVDRE 287
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P R K R+ C ++ ++D + I V+ E + GQ A FY G
Sbjct: 288 PFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVFYNGEV 342
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 343 CLGGGII 349
>gi|153950153|ref|YP_001400589.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP
31758]
gi|205828987|sp|A7FH61.1|MNMA_YERP3 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|152961648|gb|ABS49109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Yersinia pseudotuberculosis IP 31758]
Length = 371
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/376 (37%), Positives = 208/376 (55%), Gaps = 29/376 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDGKSRLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KF +F+ R++ G I+ + G +GKH G +
Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVD-GQLVGKHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KD+ +N + V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGGDDPWYVVDKDLDSNTLLVAQGH----EHPRLMSVGLVAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + ++D E + V+ + + GQ A F
Sbjct: 295 WVDRQPVTAPFRCVVKTRYRQQDIPCT--VTPLDD--ERVD-VRFDDPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVILESW 384
YQG C+G G+I + +
Sbjct: 350 YQGEICLGGGIIEQRY 365
>gi|375309840|ref|ZP_09775120.1| tRNA-specific 2-thiouridylase mnma [Paenibacillus sp. Aloe-11]
gi|375078204|gb|EHS56432.1| tRNA-specific 2-thiouridylase mnma [Paenibacillus sp. Aloe-11]
Length = 373
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 203/369 (55%), Gaps = 23/369 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + F C EED + + VC+
Sbjct: 9 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDTDEF-GRCTAEEDAEDVRRVCE 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+D+P V+ EY+ V SY ++EY+ GRTPNPDV+CN IKFG F++ + DYV
Sbjct: 66 QIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKALDLGADYV 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+VV +E L D KDQTYFL+ LSQ QL R +FP+G + K EVR
Sbjct: 126 ATGHYARVV-----EEDGRFTLLRGVDSNKDQTYFLNALSQKQLSRAMFPIGHLPKPEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS G+CF+G+ F EF++ ++ G +++ TG+ G+H G +Y
Sbjct: 181 KIAESAGLYTAKKKDSTGVCFIGERNFKEFLSGYLPAKGGDMVDIATGEVKGRHDGLMYY 240
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLS 311
T+GQRQGL + G PW+V +KD++ N+++V + D+ L+ G + W+
Sbjct: 241 TLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQG----DRHHSLYSTGLIATDVNWIE 296
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G +C + + + + +E+G ++ + + GQ FY G
Sbjct: 297 GADARPSGEFRCTAKFRYRQPDQQVTLRWLENGTVHVV---FDVHQKAITPGQAVVFYDG 353
Query: 372 TRCIGSGVI 380
RC+G G I
Sbjct: 354 ERCLGGGTI 362
>gi|229175070|ref|ZP_04302588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus MM3]
gi|228608438|gb|EEK65742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus MM3]
Length = 376
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 203/367 (55%), Gaps = 16/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W D EN C ED VC+
Sbjct: 14 RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIEVCN 70
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++ ++ DYV
Sbjct: 71 QIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAIALGADYV 130
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG + K ++R
Sbjct: 131 ATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIR 185
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GKH G +Y
Sbjct: 186 EMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGKHDGLMYY 244
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ V K++K N+++V + +++ ++ W+S E+
Sbjct: 245 TIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIGWVSNEAKEK 304
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K R+ N + + DG N + E + + GQ FY G C+G
Sbjct: 305 EFKCTAKFRYRQ---EDNKVTVQIVDG--NTVRILCDEPIRAITPGQAVVFYDGDECLGG 359
Query: 378 GVILESW 384
I E +
Sbjct: 360 ATIDEVY 366
>gi|293396528|ref|ZP_06640804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Serratia odorifera DSM 4582]
gi|291420792|gb|EFE94045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Serratia odorifera DSM 4582]
Length = 370
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 203/375 (54%), Gaps = 35/375 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + D+
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RQDVDGKNRLLR-GVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIVTVD-GQTIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN + V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNQLVVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLM---IEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P R K R+ C + E +E V+ E + GQ
Sbjct: 295 WVDRQPLTAPLRCTVKTRYRQQDLACTVTPIDAERIE--------VRFDEPVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVI 380
A FYQG C+G G+I
Sbjct: 347 AVFYQGEICLGGGII 361
>gi|293400445|ref|ZP_06644590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305471|gb|EFE46715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 391
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/394 (36%), Positives = 210/394 (53%), Gaps = 40/394 (10%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW-------------FQEDFE 59
M + KV + LSGGVDS+VA +L G+ T +++ W Q+D
Sbjct: 1 MVMKMAQKVLLGLSGGVDSAVAAYILKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDV- 59
Query: 60 NFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCN 119
CP E+D AKAV D++ +PL V EYW NV +Y ++EYR GRTPNPD+LCN
Sbjct: 60 -----CPQEQDYLDAKAVADKLGLPLLRVDFVKEYWDNVFTYFLDEYRKGRTPNPDILCN 114
Query: 120 TRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLS 179
IKF AFM + FD +A+GHYA+V H+ S + D KDQTYFL +S
Sbjct: 115 KYIKFDAFMKYARKLGFDILATGHYAQVEHTPL-----YSRMLRGADSNKDQTYFLCQVS 169
Query: 180 QAQLKRLIFPLGCISKEEVRKFATQFDLPN-KDRKDSQGICFLGKIKFSEFVARHIGEME 238
Q L +FP+G ++K EVR+ A + +L + +KDS GICF+G+ F EF+ ++ +
Sbjct: 170 QDALAHALFPIGNLNKAEVREIAQKLELESVATKKDSTGICFIGERNFKEFLQNYLPSQD 229
Query: 239 GVILEAETGDFLGKHWGFWFYTIGQRQGLRLPG--GPWYVVEKDVKNNVVFVSRNYYSFD 296
G I++ + + +G+H G +YTIGQR+GL + G GPW+VV KDV N+++V+ +
Sbjct: 230 GDIVDIHSLEVIGRHIGVLYYTIGQRKGLGIGGNKGPWFVVGKDVHKNILYVTNG----N 285
Query: 297 KKRRLFR----VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQ 352
+K L+ V + WL PE K R+ + +L E +V
Sbjct: 286 EKDWLYSTSCIVSGVNWLRPHKPENEYACTAKFRYRQQDHEISLQFID-----ETTVLVC 340
Query: 353 LSEDDQGLAAGQFAAFYQGTRCIGSGVILESWDD 386
+ + GQ A FY G C+G GVI E + D
Sbjct: 341 YPQGVASVTCGQEAVFYDGQECLGGGVIEEVFCD 374
>gi|261405437|ref|YP_003241678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus sp. Y412MC10]
gi|261281900|gb|ACX63871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus sp. Y412MC10]
Length = 375
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 203/365 (55%), Gaps = 16/365 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++ V +SGGVDSSV LL G+ ++K W D + C E D + + VC+
Sbjct: 15 RIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDDTDELGY---CTAEADAEDVRRVCE 71
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+D+P V+ EY+ V SY ++EY+ GRTPNPDV+CN IKFG F++ + DYV
Sbjct: 72 QLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKAMDLGADYV 131
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V+ D +Y+ L D KDQTYFL+ LSQ QL + +FP+G + K EVR
Sbjct: 132 ATGHYARVIEE--DGQYR---LLRGVDSNKDQTYFLNALSQEQLAKAMFPIGHLPKPEVR 186
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS G+CF+G+ F EF+ +++ G +++ TG+ G+H G +Y
Sbjct: 187 RLAEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLPAQSGDMVDIVTGEVKGRHDGLMYY 246
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
T+GQRQGL + G PW+V +KD+ NN+++V + + L G + W++G
Sbjct: 247 TLGQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVASG-INWIAGQDA 305
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
C + + + I EDG ++A ++ + + GQ FYQG C+
Sbjct: 306 MPKDAYTCTAKFRYRQPDQEVTITPREDGTVHVA---FAKPQKAITPGQAVVFYQGDECL 362
Query: 376 GSGVI 380
G G I
Sbjct: 363 GGGTI 367
>gi|392978598|ref|YP_006477186.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392324531|gb|AFM59484.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 370
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 205/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A DL +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 180 RKIAEALDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIVTVD-GDEIGQHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + R K R+ C L ++ V+ E + GQ A F
Sbjct: 295 WVDREPLKGTLRCTVKTRYRQTDIPCTLTALD-----DDRIDVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YSGEICLGGGII 361
>gi|365834367|ref|ZP_09375813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Hafnia alvei ATCC 51873]
gi|364569144|gb|EHM46767.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Hafnia alvei ATCC 51873]
Length = 367
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 200/368 (54%), Gaps = 21/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + + V D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVRRRDIDGTTQLLRGV-----DTNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A Q DL +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 180 RKIAEQLDLATAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIMTVD-GDEIGQHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVVEKD++NNV+ V++ + + L W+
Sbjct: 239 HTLGQRKGLGIGGTKDGGEDPWYVVEKDLENNVLLVAQGHDHPSLYSKGLIAQQLHWVDR 298
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
E R K R+ C + ++D E I V+ E + GQ A FY
Sbjct: 299 KTVTEPFRCVVKTRYRQPDIACT--VTPIDD--ERIE-VRFDEPVAAVTPGQSAVFYIDE 353
Query: 373 RCIGSGVI 380
C+G GVI
Sbjct: 354 VCLGGGVI 361
>gi|403049914|ref|ZP_10904398.1| tRNA-specific 2-thiouridylase MnmA [SAR86 cluster bacterium SAR86D]
Length = 359
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 208/370 (56%), Gaps = 22/370 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V V LSGGVDSSV+ LL AG+ A +++ W E E C E D K A +CD+
Sbjct: 6 VVVGLSGGVDSSVSAFLLKEAGYEVKALFMQNWQSEPGE----VCTSEIDFKDASKICDK 61
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+D+PL + +DEYW V + + E++ GRTPNPD+LCN IKF +F+D + DY+A
Sbjct: 62 LDIPLHRANFSDEYWDRVFTNFLSEHKNGRTPNPDILCNREIKFKSFLDYAFKIGADYIA 121
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYAK + + D +Y L+ +KD KDQTYFL +++ + + +FPL ++K EVR+
Sbjct: 122 TGHYAK-LETINDIKY----LKRAKDLEKDQTYFLHEVNEKEFENCLFPLENLTKSEVRE 176
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + +L D+KDS GICF+G+ +F+ R I +G+I + E G+ +G+H G YT
Sbjct: 177 IAKKNELITADKKDSVGICFVGERNLKDFLNRFIKFEKGLIKDEE-GNIIGEHQGSILYT 235
Query: 261 IGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
GQRQGL + G PWYV KD+ NN ++V + + + + + W++ +
Sbjct: 236 QGQRQGLNIGGVKGRDELPWYVYRKDIINNEIYVCQGVNNKLLMKNGLTLEHINWINNIN 295
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
E ++RH C L+ E+ ++ SE + +A GQ A FY C
Sbjct: 296 YEFPLNCSVQIRHQHKPVKCKLVYEN------DLFKTVFSEPIRAIAPGQSAVFYNNEIC 349
Query: 375 IGSGVILESW 384
+G G+I E++
Sbjct: 350 LGGGIITETF 359
>gi|222151508|ref|YP_002560664.1| tRNA-specific 2-thiouridylase MnmA [Macrococcus caseolyticus
JCSC5402]
gi|222120633|dbj|BAH17968.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Macrococcus caseolyticus JCSC5402]
Length = 371
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 136/372 (36%), Positives = 206/372 (55%), Gaps = 18/372 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W +D + F C ED + VC+
Sbjct: 7 KVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYEDVIRVCN 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ + DYV
Sbjct: 64 QIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHAVKLGADYV 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ S E V D KDQTYFL+ L+Q QL R++FPLG + K EVR
Sbjct: 124 ATGHYAQIRRSEDGVEMLRGV-----DNNKDQTYFLNQLTQEQLSRVMFPLGHLQKPEVR 178
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + DL +KDS GICF+G+ F EF++ ++ G ++ G +G H G +Y
Sbjct: 179 EIALKHDLATAKKKDSTGICFIGERNFKEFLSGYLPAQNGE-MQTLDGKPMGTHSGLMYY 237
Query: 260 TIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS-LKWLSGLPPE 316
TIGQR GL + G PW+VV K++K+NV++V + + D + + S + +++ P +
Sbjct: 238 TIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQG-FDHDALYSDYLIASDVSFVN--PVD 294
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ L+C + + + +E ++D N V +E + + GQ FY G C+G
Sbjct: 295 LTTPLECTAKFRYRQRDTKVTVEKIDD---NTIKVTYAEPVRAITPGQAVVFYNGEVCLG 351
Query: 377 SGVILESWDDQG 388
I + + G
Sbjct: 352 GATIDDVYKTSG 363
>gi|391230226|ref|ZP_10266432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Opitutaceae bacterium TAV1]
gi|391219887|gb|EIP98307.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Opitutaceae bacterium TAV1]
Length = 394
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 144/398 (36%), Positives = 208/398 (52%), Gaps = 37/398 (9%)
Query: 10 SCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE 69
S P G K+ V +SGGVDSSVA LL AG Y+K W ED N CPW++
Sbjct: 4 SAPQPESSG-KILVAMSGGVDSSVAALLLKRAGVPIEGAYMKNWINED--NIIGHCPWQQ 60
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D++ A+ V DQ+D+P VV+L +EY + VV+Y+++ YR G TPNPDV+CN IKFG F
Sbjct: 61 DIEDARRVADQLDIPFRVVNLMEEYRERVVAYLLDGYRRGLTPNPDVMCNREIKFGVFRA 120
Query: 130 AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFP 189
F VA+GHYA+ V A + L D KDQ+YFL+ LSQ QL FP
Sbjct: 121 WARDHGFTAVATGHYARRV---ALPDAAGWALHEGADGNKDQSYFLALLSQEQLADARFP 177
Query: 190 LGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDF 249
+G I K +R+ A + L D+KDSQGICF+G++K +F+ +++ + G I+ A G
Sbjct: 178 IGDIEKPGLRRLAREAGLATADKKDSQGICFIGEVKMQDFLRQYVPDQPGPIIRATDGRV 237
Query: 250 LGKHWGFWFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLF--- 302
LG+H G ++T+GQR+G+ +P + V K +N + V+ + LF
Sbjct: 238 LGEHRGLHYFTMGQRKGIGIPSNTDNKAYVVTGKRSADNALLVA---FDAPDAPGLFQNE 294
Query: 303 -RVGSLKW-----LSGLPPEEISRLQCK-----VRHGPGFY----------NCNLMIEHV 341
R+ SL+W L+ + P L + P F + +
Sbjct: 295 VRIHSLQWNTPGGLAPVLPAASGPLAAADDTTGQTNAPAFALEGRVRYRDPRVPIALIPT 354
Query: 342 EDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGV 379
GE A V+ + +GLA+GQ A ++G R +G GV
Sbjct: 355 PGSGEGTARVRFATPQRGLASGQILALHEGPRLLGGGV 392
>gi|407477764|ref|YP_006791641.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium antarcticum B7]
gi|407061843|gb|AFS71033.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium antarcticum B7]
Length = 374
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 200/366 (54%), Gaps = 16/366 (4%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V V +SGGVDSSV LL G++ ++K W D F C ED + AV +Q
Sbjct: 13 VVVGMSGGVDSSVTAYLLKQQGYNVIGIFMKNWDDTDENGF---CTATEDYEDVIAVANQ 69
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D + D+VA
Sbjct: 70 IGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLDHAMRLGADFVA 129
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA+ V+ + + V D KDQTYFL+ LSQ Q+ + +FP+G + K EVRK
Sbjct: 130 TGHYARAVYEDGEHKMLRGV-----DTNKDQTYFLNQLSQDQIAKAMFPIGHMEKSEVRK 184
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + +L +KDS GICF+G+ F +F+++++ G + + G +G+H G +YT
Sbjct: 185 IAEEANLATAKKKDSTGICFIGERNFKQFLSQYLPAQPGEMRTLD-GKSMGRHDGLMYYT 243
Query: 261 IGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+GQR GL + G PW+VV K++ +N++FV + +++ + W +P
Sbjct: 244 MGQRHGLGIGGDGEPWFVVGKNLADNILFVEQGFHNELLYSEGLYASDISWTCNMPAGTE 303
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
R K R+ + + + +E+G ++A E + + GQ FY G C+G
Sbjct: 304 FRCTAKFRYRQ--TDTAVTVRVLENGRLDVA---FDERQRAITPGQAVVFYDGDICLGGA 358
Query: 379 VILESW 384
I E++
Sbjct: 359 TIDEAY 364
>gi|423400760|ref|ZP_17377933.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-2]
gi|423457356|ref|ZP_17434153.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5X2-1]
gi|423478538|ref|ZP_17455253.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6X1-1]
gi|401147740|gb|EJQ55233.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5X2-1]
gi|401653750|gb|EJS71293.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-2]
gi|402427769|gb|EJV59872.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6X1-1]
Length = 371
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 203/367 (55%), Gaps = 16/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W D EN C ED VC+
Sbjct: 9 RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIEVCN 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++ ++ DYV
Sbjct: 66 QIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAIALGADYV 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG + K ++R
Sbjct: 126 ATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GKH G +Y
Sbjct: 181 EMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGKHDGLMYY 239
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ V K++K N+++V + +++ ++ W+S E+
Sbjct: 240 TIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIGWVSNEAKEK 299
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K R+ N + + D EN + E + + GQ FY G C+G
Sbjct: 300 EFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYDGDECLGG 354
Query: 378 GVILESW 384
I E +
Sbjct: 355 ATIDEVY 361
>gi|381150728|ref|ZP_09862597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylomicrobium album BG8]
gi|380882700|gb|EIC28577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylomicrobium album BG8]
Length = 363
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 136/367 (37%), Positives = 194/367 (52%), Gaps = 21/367 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+ V +SGGVDSSV LL GH T ++K W ++D + C +D+ A+ VCD+
Sbjct: 5 IIVGMSGGVDSSVTALLLLEQGHRVTGLFMKNWEEDDGTEY---CTAMQDLADARQVCDR 61
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYV 139
+ + L+ V+ EYW V + E+ GRTPNPD+LCN +KF AF++ AI + +Y+
Sbjct: 62 LGIELKTVNFAAEYWDEVFEVFLSEFAKGRTPNPDILCNKHVKFKAFLNYAIEDLGAEYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + EY L D K+Q+YFL + Q QL R +FP+G + K E+R
Sbjct: 122 ATGHYARV--EARGGEY---FLLKGLDPGKEQSYFLYTMGQKQLSRTLFPIGHLHKSEIR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + N +KDS GICF+G+ KF EF+ R++ G I E G +G+H G +Y
Sbjct: 177 TMAEKAGFANSRKKDSTGICFIGERKFREFLQRYLPTQPGDIRTPE-GKTIGRHHGLMYY 235
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + P PWYV+EKD+ NNV+ V + + + G L W SG
Sbjct: 236 TLGQRQGLGIGGVKDTPDEPWYVLEKDLDNNVLVVGQGHDHPLMLHNVLEAGQLDWCSGR 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P R K R+ C L+ EN E + + GQ FY
Sbjct: 296 PLAGTIRCAAKTRYRQTDQPCRLIPLP-----ENRCKAVFDEPQRAITPGQSVVFYDDEV 350
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 351 CLGGGII 357
>gi|229013614|ref|ZP_04170745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides DSM 2048]
gi|229062091|ref|ZP_04199416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH603]
gi|229169139|ref|ZP_04296854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH621]
gi|228614367|gb|EEK71477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH621]
gi|228717243|gb|EEL68918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH603]
gi|228747673|gb|EEL97545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides DSM 2048]
Length = 376
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 202/367 (55%), Gaps = 16/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W D C ED VC+
Sbjct: 14 RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDANGV---CTATEDYNDVIEVCN 70
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++ ++ DYV
Sbjct: 71 QIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAIALGADYV 130
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG + K ++R
Sbjct: 131 ATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIR 185
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GKH G +Y
Sbjct: 186 EMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGKHDGLMYY 244
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ V K++K N+++V + +++ ++ W+S E+
Sbjct: 245 TIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEK 304
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
K R+ + + ++ V+ EN + E + + GQ FY G C+G
Sbjct: 305 EFTCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGG 359
Query: 378 GVILESW 384
I E +
Sbjct: 360 ATIDEVY 366
>gi|42783525|ref|NP_980772.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus ATCC 10987]
gi|402555472|ref|YP_006596743.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus FRI-35]
gi|423573926|ref|ZP_17550045.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-D12]
gi|423603956|ref|ZP_17579849.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD102]
gi|73919894|sp|Q730D7.1|MNMA_BACC1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|42739454|gb|AAS43380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus ATCC 10987]
gi|401212495|gb|EJR19238.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-D12]
gi|401245642|gb|EJR51995.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD102]
gi|401796682|gb|AFQ10541.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus FRI-35]
Length = 371
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ N + + D EN + E + + GQ FY
Sbjct: 293 SNKAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|309805355|ref|ZP_07699405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 09V1-c]
gi|308165355|gb|EFO67588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 09V1-c]
Length = 375
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/379 (35%), Positives = 199/379 (52%), Gaps = 20/379 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D C ED +
Sbjct: 1 MTDNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGV---CTATEDFE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW V Y + EY+ GRTPNPD++CN IKF +F+D
Sbjct: 58 DVKRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLEL--SKDKVKDQTYFLSHLSQAQLKRLIFPL 190
++ DY+A GHYAK V K V+ + KD KDQTYFLS ++Q QLK+ IFPL
Sbjct: 118 KLDADYIAMGHYAKTVTD------KNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPL 171
Query: 191 GCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250
+SK +VR A Q L +KDS GICF+G+ F F++ + M G I+ A+ G +
Sbjct: 172 ADLSKPQVRMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLPAMGGKIVTAD-GRIV 230
Query: 251 GKHWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
GKH G +YTIGQR GL L G PW+VV K+++ N + V + Y S
Sbjct: 231 GKHSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDAS 290
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+ + +GLP + + + C + + ++ + + N V+ E + + GQ
Sbjct: 291 EVSFFTGLPSNDTT-IHCTAKF--RYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQA 347
Query: 366 AAFYQGTRCIGSGVILESW 384
FY G C+G +I +++
Sbjct: 348 IVFYDGEECLGGAIIDKAY 366
>gi|421872199|ref|ZP_16303818.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brevibacillus laterosporus GI-9]
gi|372458811|emb|CCF13367.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brevibacillus laterosporus GI-9]
Length = 376
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 207/373 (55%), Gaps = 19/373 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M + +V V +SGGVDSSV LL G+ ++K W +D + F C EED
Sbjct: 1 MKKPEDTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDTDEF-GHCTAEEDYH 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
+ VCDQ+ +P V+ EY + V SY ++EY+ GRTPNPDV+CN IKFG F++ +
Sbjct: 58 DVRRVCDQIGIPYYTVNFEKEYMEKVFSYFLDEYKSGRTPNPDVMCNREIKFGEFLNKVM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DYVA+GHYA+V D EY+ L D+ KDQTYFL+ L Q QL + +FP+G
Sbjct: 118 DLGADYVATGHYARV--ELRDGEYR---LLRGVDENKDQTYFLNQLGQKQLAKTLFPIGH 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K++VR+ A + L +KDS GICF+G+ F EF+ ++ G I E G+ +G
Sbjct: 173 LPKKQVREIADRAGLATAKKKDSTGICFIGERNFREFLQNYLPARPGKI-ETTDGEVIGN 231
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YT+GQRQGL + GG PW+VV+KD++ NV+ V + +
Sbjct: 232 HDGLMYYTLGQRQGLGIGGGAGEGLPWFVVDKDLERNVLIVGQGSNHPWLYSSHLIAEQV 291
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
KW+S P EE+ K R+ + + + +E ++ V+ +E + + GQ
Sbjct: 292 KWVSDEPKEEVFTCMAKFRYRQP--DQQVTVRRIE---KDTYKVEFAEPQKAVTPGQAVV 346
Query: 368 FYQGTRCIGSGVI 380
FYQG C+G G I
Sbjct: 347 FYQGEECLGGGTI 359
>gi|308049705|ref|YP_003913271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ferrimonas balearica DSM 9799]
gi|307631895|gb|ADN76197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ferrimonas balearica DSM 9799]
Length = 367
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 208/381 (54%), Gaps = 32/381 (8%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M + KV V +SGGVDSSV+ LL G+ ++K W ++D E + C +D+
Sbjct: 1 MSDNRNKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDTEEY---CAASQDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHSVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFP 189
++ DY+A+GHY + Q E+ + D KDQ+YFL L + + +FP
Sbjct: 118 EALGADYIATGHYVRRRQREDGQ------FEMLRGLDGNKDQSYFLYTLGHEHVAQTLFP 171
Query: 190 LGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDF 249
+G + K EVR+ A + DL +KDS GICF+G+ KF +F+A+++ G I E G+
Sbjct: 172 VGELEKPEVRRIAEEQDLITAGKKDSTGICFIGERKFKDFLAKYLPAQPGDI-ETTEGEV 230
Query: 250 LGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
+G+H G ++T+GQR+GLR+ G PWYVV+KD++ NV+ V + RLF
Sbjct: 231 IGQHDGLMYHTLGQRKGLRIGGLKDAGEAPWYVVDKDLERNVLIVGQGA----DNPRLFS 286
Query: 304 VG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQG 359
G L W+ P+ + + K R+ C + + DG V+ E
Sbjct: 287 NGLVANQLHWVDRTGPQGETVVSVKTRYRQQDIPCT--VTPLADGELE---VRFHEPVSS 341
Query: 360 LAAGQFAAFYQGTRCIGSGVI 380
+ GQ A FYQG C+G G+I
Sbjct: 342 VTPGQSAVFYQGDVCLGGGII 362
>gi|229032046|ref|ZP_04188029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1271]
gi|228729291|gb|EEL80285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1271]
Length = 376
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 203/367 (55%), Gaps = 16/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W D EN C ED VC+
Sbjct: 14 RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIEVCN 70
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++ ++ DYV
Sbjct: 71 QIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAIALGADYV 130
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG + K ++R
Sbjct: 131 ATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIR 185
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GKH G +Y
Sbjct: 186 EMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGKHDGLMYY 244
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ V K++K N+++V + +++ ++ W+S E+
Sbjct: 245 TIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIGWVSNEAKEK 304
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K R+ N + + D EN + E + + GQ FY G C+G
Sbjct: 305 EFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYDGDECLGG 359
Query: 378 GVILESW 384
I E +
Sbjct: 360 ATIDEVY 366
>gi|423100594|ref|ZP_17088301.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua ATCC 33091]
gi|370792818|gb|EHN60661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua ATCC 33091]
Length = 358
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/362 (37%), Positives = 197/362 (54%), Gaps = 16/362 (4%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSV +L G+ ++K W +D + F C ED V +Q+ +P
Sbjct: 1 MSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVANQIGIP 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DYVA+GHY
Sbjct: 58 YYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADYVATGHY 117
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
A+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EVR+ AT+
Sbjct: 118 AQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTEVREIATK 172
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
L ++KDS GICF+G+ F +F++ ++ G + + G+ LGKH G +YTIGQR
Sbjct: 173 AGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGDMRTLD-GEVLGKHDGLMYYTIGQR 231
Query: 265 QGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQ 322
GL + G PW+VV KD+KNNV+FV + ++ + + + E+
Sbjct: 232 HGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDISFTTN--SEKPKTFV 289
Query: 323 CKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILE 382
C + + + + EDG A V ++ + + GQ FY G C+G G I
Sbjct: 290 CTAKFRYRQTDTKVTVNMREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGGTIDT 346
Query: 383 SW 384
W
Sbjct: 347 VW 348
>gi|312872357|ref|ZP_07732427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2062A-h1]
gi|349611351|ref|ZP_08890588.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sp. 7_1_47FAA]
gi|311092180|gb|EFQ50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2062A-h1]
gi|348609277|gb|EGY59236.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sp. 7_1_47FAA]
Length = 375
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/379 (35%), Positives = 199/379 (52%), Gaps = 20/379 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D C ED +
Sbjct: 1 MTDNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGV---CTATEDFE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW V Y + EY+ GRTPNPD++CN IKF +F+D
Sbjct: 58 DVKRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLEL--SKDKVKDQTYFLSHLSQAQLKRLIFPL 190
++ DY+A GHYAK V K V+ + KD KDQTYFLS ++Q QLK+ IFPL
Sbjct: 118 KLDADYIAMGHYAKTVTD------KNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPL 171
Query: 191 GCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250
+SK +VR A Q L +KDS GICF+G+ F F++ + M G I+ A+ G +
Sbjct: 172 ADLSKPQVRMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTAD-GRIV 230
Query: 251 GKHWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
GKH G +YTIGQR GL L G PW+VV K+++ N + V + Y S
Sbjct: 231 GKHSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDAS 290
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+ + +GLP + + + C + + ++ + + N V+ E + + GQ
Sbjct: 291 EVSFFTGLPSNDTT-IHCTAKF--RYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQA 347
Query: 366 AAFYQGTRCIGSGVILESW 384
FY G C+G +I +++
Sbjct: 348 IVFYDGEECLGGAIIDKAY 366
>gi|196034345|ref|ZP_03101754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus W]
gi|195992887|gb|EDX56846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus W]
Length = 372
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 5 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 59
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 60 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 119
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 120 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 174
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 175 LKKPQIREMAKKAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 233
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 234 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 293
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ N + + D EN + E + + GQ FY
Sbjct: 294 SNEAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 348
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 349 GDECLGGATIDEVY 362
>gi|374606548|ref|ZP_09679405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus dendritiformis C454]
gi|374387859|gb|EHQ59324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus dendritiformis C454]
Length = 366
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 202/365 (55%), Gaps = 19/365 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + F C E+D + + VC+
Sbjct: 9 RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNW--DDTDEFG-HCTAEDDAEDVRRVCE 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +Y+ V +Y +EEYR GRTPNPDV+CN IKFG F+ + DYV
Sbjct: 66 QIGIPYYTVNFERQYYDKVFAYFLEEYRRGRTPNPDVMCNREIKFGEFLQKALDLGADYV 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+VV + + D+ KDQTYFL+ L+Q QL R +FP+G + K EVR
Sbjct: 126 ATGHYARVVREDGQAKLLRGI-----DRNKDQTYFLNALNQEQLARAMFPIGHLPKPEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS G+CF+G+ F EF+++++ G +++ +G+ G+H G +Y
Sbjct: 181 RIAEEAGLATAKKKDSTGVCFIGERNFKEFLSQYLPAQPGDMIDIRSGELKGRHDGLMYY 240
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
T+GQRQGL + G PW+V EKDV N+++V + + L R + W++G P
Sbjct: 241 TLGQRQGLGIGGSGTGEPWFVAEKDVARNILYVVQGDHPSLYSTGL-RATGVSWIAGEAP 299
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
+ +L C + + + IE + DG V + + GQ FY G C+
Sbjct: 300 D---KLHCTAKFRYRQPDQEVTIERIGDGTYE---VTFGAHQKAVTPGQAVVFYDGEVCL 353
Query: 376 GSGVI 380
G G I
Sbjct: 354 GGGTI 358
>gi|350563037|ref|ZP_08931860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thioalkalimicrobium aerophilum AL3]
gi|349779903|gb|EGZ34244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thioalkalimicrobium aerophilum AL3]
Length = 386
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 206/373 (55%), Gaps = 14/373 (3%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P + +KV V LSGGVDSSV LL G+ ++K W +D +++ CP D++
Sbjct: 4 PANQTIKVIVGLSGGVDSSVTAWLLKQQGYQVEGLFMKNWEGDDSDDY---CPAAADLQD 60
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS 133
AVC+++D+PL V + EYW++V + + EY+ GRTPNPD+LCN IKF AF+D +
Sbjct: 61 VFAVCERLDIPLHVENFAQEYWQHVFEHFLTEYQAGRTPNPDILCNKEIKFKAFLDHALA 120
Query: 134 MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
+ D +A+GHYA+ V SA +Y+ L D KDQ+YFL L Q L +FP+G +
Sbjct: 121 LGADKIATGHYAR-VQPSAQGDYQ---LLKGLDSNKDQSYFLYTLQQFALSHTLFPIGHL 176
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K EVR+ A L ++KDS GICF+G+ KF +F+ R++ G I+ E GD +G+H
Sbjct: 177 PKPEVRRLAEAAGLVVHNKKDSTGICFIGERKFKDFLQRYLPAQPGDIVN-EQGDKVGQH 235
Query: 254 WGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
G +YT+GQR+GL + GG PW+VV+K++ N + V++ R L
Sbjct: 236 EGLMYYTLGQRKGLGIGGGHGESGEPWFVVDKNLATNQLIVAQGDQQPSLYHRALSAQDL 295
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+SG P L K+R+ C + D + +V+ + + + GQ
Sbjct: 296 DWVSGEAPALNRPLTAKIRYRQQEQACWIRDIQSNDINKAQIIVEFDQPQKAITPGQSIV 355
Query: 368 FYQGTRCIGSGVI 380
Y G C+G GVI
Sbjct: 356 LYDGELCLGGGVI 368
>gi|218281120|ref|ZP_03487655.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989]
gi|218217634|gb|EEC91172.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989]
Length = 385
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 144/386 (37%), Positives = 217/386 (56%), Gaps = 36/386 (9%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWT---------ECPWEE 69
+KV V LSGGVDS+VA LL G+ T +++ W + F N CP E+
Sbjct: 1 MKVLVGLSGGVDSAVAAYLLKKQGYDVTCCFMRNW--DSFANNDIAGNPTIKDDTCPQEQ 58
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D A AV + +D+PL+ V +EYW NV + EY GRTPNPD+LCN IKF +F +
Sbjct: 59 DYLDALAVANHLDLPLQRVDFIEEYWDNVFKTFLSEYEKGRTPNPDILCNKYIKFDSFFE 118
Query: 130 AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFP 189
FD VA+GHYA S +E + L +KD+ KDQTYFL + ++++ + IFP
Sbjct: 119 YAMKQGFDKVATGHYA-----SNAEENGFTYLTRAKDQNKDQTYFLCQVEKSKIAKTIFP 173
Query: 190 LGCISKEEVRKFATQFDLPN-KDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
L + K E+R+ A + +L + +KDS GICF+G+ F +F++ ++ +G I++ T
Sbjct: 174 LAHLEKPEIRQIAAELNLESVATKKDSTGICFIGERNFRQFLSNYLPSKDGDIVDVNTSK 233
Query: 249 FLGKHWGFWFYTIGQRQGLRLP--GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR--- 303
+ +H G +YTIGQR+GL + GPW+VV KDV N+++V R D++ L+
Sbjct: 234 VIARHVGVLYYTIGQRKGLNIDHEKGPWFVVGKDVVKNILYVCRT----DQRDLLYSDSC 289
Query: 304 -VGSLKWLSGLPP-EEI-SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGL 360
V + W+ LP EEI ++ CK R+ + ++ IE ++D +V+ + +
Sbjct: 290 IVKGINWI--LPSLEEIPTKCTCKFRYRQK--DQDIEIERLDDTS---VLVKYPQTIASV 342
Query: 361 AAGQFAAFYQGTRCIGSGVILESWDD 386
GQ A FY G +CIG GVI E + D
Sbjct: 343 TEGQEAVFYDGDKCIGGGVIEEVFKD 368
>gi|196039389|ref|ZP_03106695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus NVH0597-99]
gi|206976034|ref|ZP_03236944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus H3081.97]
gi|217961886|ref|YP_002340456.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus AH187]
gi|218905591|ref|YP_002453425.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus AH820]
gi|225866378|ref|YP_002751756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 03BB102]
gi|376268294|ref|YP_005121006.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus F837/76]
gi|196030016|gb|EDX68617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus NVH0597-99]
gi|206745786|gb|EDZ57183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus H3081.97]
gi|217066211|gb|ACJ80461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH187]
gi|218535576|gb|ACK87974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH820]
gi|225789110|gb|ACO29327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 03BB102]
gi|364514094|gb|AEW57493.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Bacillus cereus F837/76]
Length = 372
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 5 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 59
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 60 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 119
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 120 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 174
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 175 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 233
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 234 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 293
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ N + + D EN + E + + GQ FY
Sbjct: 294 SNEAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 348
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 349 GDECLGGATIDEVY 362
>gi|329926781|ref|ZP_08281189.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus sp. HGF5]
gi|328938981|gb|EGG35349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus sp. HGF5]
Length = 389
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 203/365 (55%), Gaps = 16/365 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++ V +SGGVDSSV LL G+ ++K W D + C E D + + VC+
Sbjct: 29 RIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDDTDELGY---CTAEADAEDVRRVCE 85
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+D+P V+ EY+ V SY ++EY+ GRTPNPDV+CN IKFG F++ + DYV
Sbjct: 86 QLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKAMDLGADYV 145
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V+ D +Y+ L D KDQTYFL+ LSQ QL + +FP+G + K EVR
Sbjct: 146 ATGHYARVIEE--DGQYR---LLRGVDSNKDQTYFLNALSQEQLSKAMFPIGHLPKPEVR 200
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS G+CF+G+ F EF+ +++ G +++ TG+ G+H G +Y
Sbjct: 201 RLAEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLPAQSGDMVDIVTGEVKGRHDGLMYY 260
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
T+GQRQGL + G PW+V +KD+ NN+++V + + L G + W++G
Sbjct: 261 TLGQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVASG-MNWIAGQDA 319
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
C + + + I EDG ++A ++ + + GQ FYQG C+
Sbjct: 320 MPKDAYACTAKFRYRQPDQEVTITPREDGTVHVA---FAKPQKAITPGQAVVFYQGDDCL 376
Query: 376 GSGVI 380
G G I
Sbjct: 377 GGGTI 381
>gi|229086959|ref|ZP_04219116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-44]
gi|228696335|gb|EEL49163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-44]
Length = 376
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 208/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--IDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ + + ++ V+D N + E + + GQ FY
Sbjct: 298 SNRAKEKGFKCTAKFRYRQ--EDNKVTVQIVDD---NTIRILCDEPIRAITPGQAVVFYD 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|308070334|ref|YP_003871939.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus polymyxa E681]
gi|305859613|gb|ADM71401.1| Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus polymyxa E681]
Length = 373
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 203/369 (55%), Gaps = 23/369 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + F C EED + + VC+
Sbjct: 9 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDTDEF-GRCTAEEDAEDVRRVCE 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+D+P V+ EY+ V SY ++EY+ GRTPNPDV+CN IKFG F++ + DYV
Sbjct: 66 QIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKALDLGADYV 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+VV +E L D KDQTYFL+ LSQ QL R +FP+G + K EVR
Sbjct: 126 ATGHYAQVV-----EEDGHFTLLRGVDSNKDQTYFLNALSQTQLSRAMFPIGHLPKPEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS G+CF+G+ F EF++ ++ G +++ TG+ G+H G +Y
Sbjct: 181 KIAEAAGLYTAKKKDSTGVCFIGERNFKEFLSGYLPAKGGDMVDIATGEVKGRHDGLMYY 240
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLS 311
T+GQRQGL + G PW+V +KD++ N+++V + D+ L+ + W+
Sbjct: 241 TLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQG----DRHHSLYSTSLIATDVNWIE 296
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G S +C + + + ++ + DG ++ + + GQ FY G
Sbjct: 297 GADTRPTSEFRCTAKFRYRQPDQQVTLQWLADGTVHVI---FDVHQKAITPGQAVVFYDG 353
Query: 372 TRCIGSGVI 380
RC+G G I
Sbjct: 354 ERCLGGGTI 362
>gi|290893871|ref|ZP_06556849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J2-071]
gi|404407950|ref|YP_006690665.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2376]
gi|290556588|gb|EFD90124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J2-071]
gi|404242099|emb|CBY63499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2376]
Length = 371
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 199/368 (54%), Gaps = 16/368 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L ++KDS GICF+G+ F +F++ ++ G + + G+ LGKH G +
Sbjct: 180 REIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLD-GEVLGKHDGLMY 238
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
YTIGQR GL + G PW+VV KD+K NV+FV + ++ + + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAAKP 298
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+ K R+ + + + EDG A V ++ + + GQ FY G C+G
Sbjct: 299 KTIECTAKFRYRQ--TDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDICLG 353
Query: 377 SGVILESW 384
G I W
Sbjct: 354 GGTIDTVW 361
>gi|163942146|ref|YP_001647030.1| tRNA-specific 2-thiouridylase MnmA [Bacillus weihenstephanensis
KBAB4]
gi|423368442|ref|ZP_17345874.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD142]
gi|423489575|ref|ZP_17466257.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BtB2-4]
gi|423495298|ref|ZP_17471942.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus CER057]
gi|423497908|ref|ZP_17474525.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus CER074]
gi|423512507|ref|ZP_17489038.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA2-1]
gi|423519093|ref|ZP_17495574.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA2-4]
gi|423591612|ref|ZP_17567643.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD048]
gi|423598293|ref|ZP_17574293.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD078]
gi|423660764|ref|ZP_17635933.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM022]
gi|423669977|ref|ZP_17645006.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM034]
gi|423673819|ref|ZP_17648758.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM062]
gi|205812536|sp|A9VIM2.1|MNMA_BACWK RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|163864343|gb|ABY45402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus weihenstephanensis KBAB4]
gi|401080769|gb|EJP89053.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD142]
gi|401151391|gb|EJQ58843.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus CER057]
gi|401160148|gb|EJQ67527.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA2-4]
gi|401161195|gb|EJQ68562.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus CER074]
gi|401231745|gb|EJR38247.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD048]
gi|401236563|gb|EJR43020.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD078]
gi|401299104|gb|EJS04704.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM034]
gi|401300805|gb|EJS06394.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM022]
gi|401310185|gb|EJS15510.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM062]
gi|402431811|gb|EJV63875.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BtB2-4]
gi|402449478|gb|EJV81315.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA2-1]
Length = 371
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 202/367 (55%), Gaps = 16/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W D C ED VC+
Sbjct: 9 RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDANGV---CTATEDYNDVIEVCN 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++ ++ DYV
Sbjct: 66 QIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAIALGADYV 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG + K ++R
Sbjct: 126 ATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ AT+ L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GKH G +Y
Sbjct: 181 EMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGKHDGLMYY 239
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ V K++K N+++V + +++ ++ W+S E+
Sbjct: 240 TIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEK 299
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
K R+ + + ++ V+ EN + E + + GQ FY G C+G
Sbjct: 300 EFTCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGG 354
Query: 378 GVILESW 384
I E +
Sbjct: 355 ATIDEVY 361
>gi|157962359|ref|YP_001502393.1| tRNA-specific 2-thiouridylase MnmA [Shewanella pealeana ATCC
700345]
gi|157847359|gb|ABV87858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella pealeana ATCC 700345]
Length = 398
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 206/390 (52%), Gaps = 37/390 (9%)
Query: 2 TQIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENF 61
T IEP +L G KV V +SGGVDSSV+ LL G+ ++K W ++D + +
Sbjct: 29 TSIEPTHL--------GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY 80
Query: 62 WTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTR 121
C +D+K A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN
Sbjct: 81 ---CAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKE 137
Query: 122 IKFGAFMD-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQ 180
IKF AF++ A ++ DY+A GHY + + V D KDQ+YFL L
Sbjct: 138 IKFKAFLEFADEILDADYIAMGHYVRRRDIDGTSQMLRGV-----DGNKDQSYFLYTLGY 192
Query: 181 AQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGV 240
Q+ R +FP+G + K EVR+ A + L D+KDS GICF+G+ KF++F+ + G
Sbjct: 193 EQVARSLFPVGELDKSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLPAQPGN 252
Query: 241 ILEAETGDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYS 294
I E G+ +G H G ++T+GQR+GL + G PWYVVEKD+ NV+ V +
Sbjct: 253 I-ETSEGEVIGTHQGLMYHTLGQRKGLGIGGLKNSNDDPWYVVEKDLVRNVLIVGQG--- 308
Query: 295 FDKKRRLFRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAV 350
RL G L W+ P S++ K R+ C++ + +++
Sbjct: 309 -GNHPRLMSNGLVANQLHWVDRKGPANGSKITVKTRYRQQDVPCSVTYD-----SDDVLR 362
Query: 351 VQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
V E + GQ A FY G C+G G+I
Sbjct: 363 VIFDEPVAAVTPGQSAVFYDGEICLGGGII 392
>gi|47566584|ref|ZP_00237406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus G9241]
gi|49481478|ref|YP_038446.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141111|ref|YP_085718.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus E33L]
gi|222097839|ref|YP_002531896.1| tRNA-specific 2-thiouridylase mnma [Bacillus cereus Q1]
gi|254724677|ref|ZP_05186460.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. A1055]
gi|300119218|ref|ZP_07056915.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1]
gi|301055904|ref|YP_003794115.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus biovar anthracis str. CI]
gi|375286400|ref|YP_005106839.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus NC7401]
gi|423354887|ref|ZP_17332512.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus IS075]
gi|423373644|ref|ZP_17350983.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus AND1407]
gi|423549864|ref|ZP_17526191.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus ISP3191]
gi|423570634|ref|ZP_17546879.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-A12]
gi|71658010|sp|Q634E9.1|MNMA_BACCZ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|73919896|sp|Q6HDD0.1|MNMA_BACHK RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205814924|sp|A0RJ05.2|MNMA_BACAH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|254811444|sp|B9IYG1.1|MNMA_BACCQ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|47556614|gb|EAL14946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus G9241]
gi|49333034|gb|AAT63680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|51974580|gb|AAU16130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus E33L]
gi|221241897|gb|ACM14607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Q1]
gi|298723438|gb|EFI64183.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1]
gi|300378073|gb|ADK06977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus biovar anthracis str. CI]
gi|358354927|dbj|BAL20099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus NC7401]
gi|401085771|gb|EJP94007.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus IS075]
gi|401095848|gb|EJQ03901.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus AND1407]
gi|401189480|gb|EJQ96530.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus ISP3191]
gi|401203830|gb|EJR10665.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-A12]
Length = 371
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ N + + D EN + E + + GQ FY
Sbjct: 293 SNEAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|429215953|ref|ZP_19207112.1| tRNA-specific 2-thiouridylase mnmA [Pseudomonas sp. M1]
gi|428153606|gb|EKX00160.1| tRNA-specific 2-thiouridylase mnmA [Pseudomonas sp. M1]
Length = 379
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/378 (35%), Positives = 205/378 (54%), Gaps = 22/378 (5%)
Query: 10 SCSMPHQKGL-KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
S + P Q G +V V +SGGVDSSV+ LL G+ ++K W ++D + C
Sbjct: 5 STTSPVQPGKGRVIVGMSGGVDSSVSALLLKEQGYEVEGLFMKNWEEDDGTEY---CTAM 61
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
D+ A+AVCD++ + L + EYW NV Y + EY+ GRTPNPD+LCN IKF AF+
Sbjct: 62 TDLADAQAVCDRIGIKLHTANFAAEYWDNVFEYFLAEYQAGRTPNPDILCNREIKFKAFL 121
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
D ++ D +A+GHY + D + + +L+ D KDQ+YFL + Q+ R +F
Sbjct: 122 DYALALGADLIATGHYVR----RRDIDGRTELLK-GLDPNKDQSYFLHAVGGEQIARTLF 176
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G + K EVR A ++ L +KDS GICF+G+ +FS+F+ +++ G I E G
Sbjct: 177 PVGELEKPEVRAIAEKYGLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGDI-ETTDGT 235
Query: 249 FLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLF 302
+G+H G ++TIGQRQGL + G PWYV+EKD+ NV+ V + R
Sbjct: 236 VIGRHAGLMYHTIGQRQGLGIGGMKNADDSPWYVLEKDLARNVLIVGQGNDHPWLFSRAL 295
Query: 303 RVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
++ W++ L E L+ KVR+ +C ++E DG + + + +
Sbjct: 296 HASNIFWVNPLELPEPRALRAKVRYRQADQDC--VLERTADGYRAV----FDQPQRAVTP 349
Query: 363 GQFAAFYQGTRCIGSGVI 380
GQ FY G C+G GVI
Sbjct: 350 GQSVVFYDGEVCLGGGVI 367
>gi|323494972|ref|ZP_08100063.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546]
gi|323310767|gb|EGA63940.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546]
Length = 378
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 213/385 (55%), Gaps = 24/385 (6%)
Query: 10 SCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE 69
+C+ QK KV V +SGGVDSSV+ LL G+ ++K W ++D E + C E
Sbjct: 4 NCTDNSQK--KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAE 58
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D+ A+AVCD++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++
Sbjct: 59 DLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLE 118
Query: 130 -AISSMEFDYVASGHYAKVVHSSADQ---EYKPSVLELSKDKVKDQTYFLSHLSQAQLKR 185
A ++ DY+A GHY + +A++ KP +L D KDQ+YFL LS Q+ R
Sbjct: 119 FADEVLDADYIAMGHYVRRTFPTAEELAAGEKPKMLR-GLDGNKDQSYFLYTLSSDQVAR 177
Query: 186 LIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAE 245
+FP+G + K EVR+ A + DL +KDS GICF+G+ KF++F+ R++ G I E
Sbjct: 178 SLFPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLGRYLPAQPGDI-ETP 236
Query: 246 TGDFLGKHWGFWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDK 297
G +GKH G ++T+GQR+GL + G PW+V +KD+K NV+ +
Sbjct: 237 EGKVIGKHNGLMYHTLGQRKGLHIGGQKGGGGNEDPWFVGDKDLKRNVLIAVQGKDHPML 296
Query: 298 KRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD 357
K + L W+ +E + K R+ C ++ ++D ENI V+ E
Sbjct: 297 KSQGLIASQLHWVDRAAIKEPLQCTVKTRYRQTDIPCTII--PIDD--ENIKVI-FDEPQ 351
Query: 358 QGLAAGQFAAFYQGTRCIGSGVILE 382
+ GQ A FY+ C+G G+I E
Sbjct: 352 VAVTPGQSAVFYKDEVCLGGGIIEE 376
>gi|229918430|ref|YP_002887076.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sp. AT1b]
gi|229469859|gb|ACQ71631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Exiguobacterium sp. AT1b]
Length = 373
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 199/366 (54%), Gaps = 17/366 (4%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V V +SGGVDSSV +L G++ ++K W D EN C ED + AV +Q
Sbjct: 13 VVVGMSGGVDSSVTAHVLKEQGYNVIGIFMKNWDDTD-EN--GVCTATEDYEDVIAVANQ 69
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D + D+VA
Sbjct: 70 IGIPYYAVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDHALRLGADFVA 129
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA+V + D E++ L KD KDQTYFL+ LSQ QL R +FP+G + K++VR
Sbjct: 130 TGHYAQVKY--VDGEHR---LLRGKDDNKDQTYFLNQLSQDQLARTMFPIGHMDKKDVRA 184
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + L +KDS GICF+G+ F EF++ ++ G + + G G+H G +YT
Sbjct: 185 IAEEAGLATAKKKDSTGICFIGERNFKEFLSEYLPSQPGEMRTLD-GVVKGRHDGLMYYT 243
Query: 261 IGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+GQR GL + G PW+VV KDV+NNV+FV + ++ L W P E
Sbjct: 244 LGQRHGLGIGGDGDPWFVVGKDVENNVLFVGQGFHHDALYSDALLASKLSWTGAAPTGEF 303
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
R K R+ + + + +E+G +V+ E + + GQ FY G C+G
Sbjct: 304 -RATAKFRYRQ--QDVPVTVAPLENGE---VLVKFDEPQRAITPGQAVVFYDGDVCLGGA 357
Query: 379 VILESW 384
I E++
Sbjct: 358 TIDEAY 363
>gi|191638296|ref|YP_001987462.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus casei BL23]
gi|385819996|ref|YP_005856383.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei LC2W]
gi|385823196|ref|YP_005859538.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei BD-II]
gi|190712598|emb|CAQ66604.1| Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei BL23]
gi|327382323|gb|AEA53799.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei LC2W]
gi|327385523|gb|AEA56997.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei BD-II]
Length = 443
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 196/371 (52%), Gaps = 18/371 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 77 IRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVA 133
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY
Sbjct: 134 SEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNADY 193
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHYA+V D+ +L D KDQTYFLS LSQ QLK+ +FP+G + K EV
Sbjct: 194 IAMGHYAQV---KTDENGIVHMLR-GADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPEV 249
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ F +F++ ++ G ++ + G +G H G +
Sbjct: 250 RKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEMGTHDGLMY 308
Query: 259 YTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
YTIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 309 YTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGQ 368
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P E + + K R+ + + + + +DG A V + + GQ FY G
Sbjct: 369 APAEGTHMTAKFRYRQ--RDTGVTLHYHDDG---TATVDFDVPVRAITPGQAVVFYDGDE 423
Query: 374 CIGSGVILESW 384
C+G G I ++
Sbjct: 424 CLGGGTIDAAY 434
>gi|65321763|ref|ZP_00394722.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Bacillus anthracis str. A2012]
gi|386738286|ref|YP_006211467.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. H9401]
gi|384388138|gb|AFH85799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. H9401]
Length = 376
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ N + + D EN + E + + GQ FY
Sbjct: 298 SNEAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|407683609|ref|YP_006798783.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas macleodii str.
'English Channel 673']
gi|407245220|gb|AFT74406.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas macleodii str.
'English Channel 673']
Length = 369
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 203/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K A+AV D
Sbjct: 11 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVAD 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A + DY
Sbjct: 68 KLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGADY 127
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D +++ + D KDQ+YFL L + + + +FP+G I K V
Sbjct: 128 IATGHYVR--RREVDGKWQ---MLRGLDNNKDQSYFLYTLGEEHVAKTLFPVGDIEKPLV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + L D+KDS GICF+G+ KF +F+AR++ GVI AE G+ +G+H G +
Sbjct: 183 RKIAEEQGLITHDKKDSTGICFIGERKFKDFLARYLPAQPGVIETAE-GEEIGQHEGLMY 241
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NV+ V + RL+ G L
Sbjct: 242 HTLGQRKGLHIGGLAKYGDDPWYVVDKDVARNVLIVGQGA----DHPRLYSKGLVAKQLH 297
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ E +R K R+ C + ++ V E + + GQ A F
Sbjct: 298 WVDRKTITEPTRAVVKTRYRQADIPCTITPTQ-----DDTIEVMFDEPQKAVTPGQSAVF 352
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 353 YSDEVCLGGGII 364
>gi|228910232|ref|ZP_04074050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis IBL 200]
gi|228849396|gb|EEM94232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis IBL 200]
Length = 376
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 205/374 (54%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E + K R+ N + + D EN + E + + GQ FY
Sbjct: 298 SNKAKETEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|407695807|ref|YP_006820595.1| tRNA-specific 2-thiouridylase mnmA [Alcanivorax dieselolei B5]
gi|407253145|gb|AFT70252.1| tRNA-specific 2-thiouridylase mnmA [Alcanivorax dieselolei B5]
Length = 372
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 193/370 (52%), Gaps = 20/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA L AG+ ++K W ++D + C ED+ A V
Sbjct: 16 RVIVGMSGGVDSSVAAARLLEAGYQVEGLFMKNWNEDDGTEY---CTAREDLLDAMQVAG 72
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + L V+ EYW V + +EEYR GRTPNPD+LCN IKF AF+D ++ D +
Sbjct: 73 VLGMELHTVNFAGEYWDRVFEHFLEEYRAGRTPNPDILCNKEIKFRAFLDHAVALGADAI 132
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V H P+ L + D KDQTYFL + + R +FPLG + K EVR
Sbjct: 133 ATGHYARVEHGPG-----PARLLRAVDTNKDQTYFLHAVGGDKFARTLFPLGDLHKPEVR 187
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + N +KDS GICF+G+ +F +F+ ++ GVI E + G +G+H G +Y
Sbjct: 188 RLAGEKGFDNHKKKDSTGICFIGERRFKDFLETYLPAQPGVI-EDDHGKVIGRHDGLMYY 246
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + G PWYV KD+ NV+ + + R + W++
Sbjct: 247 TLGQRQGLGIGGRADGNDEPWYVAGKDLTRNVLIAVQGHDHPLLFSRELTSAPVDWVAMS 306
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP +RL K R+ C VE G+ V + + + GQ FY G
Sbjct: 307 PPALPARLTAKTRYRQPDQACT-----VESAGDGRVRVVFDQPQRAVTPGQSVVFYDGDA 361
Query: 374 CIGSGVILES 383
C+G VI E+
Sbjct: 362 CLGGAVIEET 371
>gi|270261459|ref|ZP_06189732.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13]
gi|421783102|ref|ZP_16219554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Serratia plymuthica A30]
gi|270044943|gb|EFA18034.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13]
gi|407754808|gb|EKF64939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Serratia plymuthica A30]
Length = 367
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 205/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + D+
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RQDVDGKSRLLR-GVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIVNVD-GQTVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NNV+ V++ + RL G L
Sbjct: 239 HTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGH----DHPRLMSTGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ LP R K R+ C + ++D + I V+ E + GQ A F
Sbjct: 295 WVDRLPLSGPLRCTVKTRYRQQDIPCT--VTPLDD--QRIE-VRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQ C+G G+I
Sbjct: 350 YQDEICLGGGII 361
>gi|118479554|ref|YP_896705.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis str. Al
Hakam]
gi|228929441|ref|ZP_04092462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228935717|ref|ZP_04098530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228948110|ref|ZP_04110394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228987648|ref|ZP_04147762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229093467|ref|ZP_04224570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-42]
gi|229123937|ref|ZP_04253129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 95/8201]
gi|229141133|ref|ZP_04269675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST26]
gi|229158012|ref|ZP_04286083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus ATCC 4342]
gi|118418779|gb|ABK87198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis str. Al Hakam]
gi|228625465|gb|EEK82221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus ATCC 4342]
gi|228642411|gb|EEK98700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST26]
gi|228659239|gb|EEL14887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 95/8201]
gi|228689938|gb|EEL43742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-42]
gi|228772108|gb|EEM20560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228811468|gb|EEM57805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228823955|gb|EEM69774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228830229|gb|EEM75845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 376
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ N + + D EN + E + + GQ FY
Sbjct: 298 SNEAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|78485443|ref|YP_391368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiomicrospira crunogena XCL-2]
gi|123555534|sp|Q31GM9.1|MNMA_THICR RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|78363729|gb|ABB41694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiomicrospira crunogena XCL-2]
Length = 379
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/378 (35%), Positives = 205/378 (54%), Gaps = 19/378 (5%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
+ S +KV V LSGGVDSSV LL G+ ++K W +D E++ CP
Sbjct: 1 MQTSKQDNSNIKVIVGLSGGVDSSVTALLLKQQGYDVEGLFMKNWEGDDTEDY---CPAA 57
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED+K A+C+++D+PL V + + EYW V + + EY+ GRTPNPD+LCN +KF AF+
Sbjct: 58 EDLKDVLAICEKLDIPLHVENFSGEYWDRVFEHFLAEYQSGRTPNPDILCNKEVKFKAFL 117
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
+ ++ DY+A+GHYA++ Q Y L D KDQ+YFL L Q QL + +F
Sbjct: 118 EHAMTLGADYIATGHYARISRDENGQCYLLKGL----DNNKDQSYFLYTLQQHQLSKSMF 173
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G + K VR+ A + DL D+KDS GICF+G+ KF +F+ + + G I+ E G+
Sbjct: 174 PIGELEKPYVRQLAEEADLITHDKKDSTGICFIGERKFKDFLQQFLPAQPGDIVNTE-GE 232
Query: 249 FLGKHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLF 302
+G H G ++T+GQR+GL + GG PW+ +K+++ N + +
Sbjct: 233 VIGHHEGLMYHTLGQRKGLGIGGGFGDSGLPWFSADKNLETNQLIAVQGSDHPLLNHAFL 292
Query: 303 RVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
+ W+SG P L+ KVR+ C ++ E GE +VQ E+ +
Sbjct: 293 TADTCDWVSGHCPALKQALKAKVRYRQPEQPCQIL---SEKNGE--IIVQFDEEQTAITP 347
Query: 363 GQFAAFYQGTRCIGSGVI 380
GQ FY+G C+G +I
Sbjct: 348 GQSVVFYEGETCLGGAII 365
>gi|227535218|ref|ZP_03965267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|227187102|gb|EEI67169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
Length = 471
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 196/371 (52%), Gaps = 18/371 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 105 IRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVA 161
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY
Sbjct: 162 SEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNADY 221
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHYA+V D+ +L D KDQTYFLS LSQ QLK+ +FP+G + K EV
Sbjct: 222 IAMGHYAQV---KTDENGIVHMLR-GADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPEV 277
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ F +F++ ++ G ++ + G +G H G +
Sbjct: 278 RKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEMGTHDGLMY 336
Query: 259 YTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
YTIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 337 YTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGQ 396
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P E + + K R+ + + + + +DG A V + + GQ FY G
Sbjct: 397 APAEGTHMTAKFRYRQ--RDTGVTLHYHDDG---TATVDFDVPVRAITPGQAVVFYDGDE 451
Query: 374 CIGSGVILESW 384
C+G G I ++
Sbjct: 452 CLGGGTIDAAY 462
>gi|165872748|ref|ZP_02217376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0488]
gi|167636496|ref|ZP_02394793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0442]
gi|167638584|ref|ZP_02396860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0193]
gi|170689637|ref|ZP_02880819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0465]
gi|170709396|ref|ZP_02899807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0389]
gi|177653267|ref|ZP_02935519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0174]
gi|190566853|ref|ZP_03019769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. Tsiankovskii-I]
gi|227817175|ref|YP_002817184.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. CDC
684]
gi|229601635|ref|YP_002868683.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. A0248]
gi|164711524|gb|EDR17073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0488]
gi|167513432|gb|EDR88802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0193]
gi|167528089|gb|EDR90886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0442]
gi|170125695|gb|EDS94611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0389]
gi|170666407|gb|EDT17188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0465]
gi|172081549|gb|EDT66621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0174]
gi|190561844|gb|EDV15813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. Tsiankovskii-I]
gi|227004048|gb|ACP13791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. CDC 684]
gi|229266043|gb|ACQ47680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0248]
Length = 372
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 5 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 59
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 60 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 119
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 120 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 174
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 175 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 233
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 234 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 293
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ N + + D EN + E + + GQ FY
Sbjct: 294 SNEAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 348
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 349 GDECLGGATIDEVY 362
>gi|359785963|ref|ZP_09289107.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Halomonas sp. GFAJ-1]
gi|359296666|gb|EHK60910.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Halomonas sp. GFAJ-1]
Length = 380
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 203/382 (53%), Gaps = 23/382 (6%)
Query: 10 SCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE 69
S + P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C +E
Sbjct: 8 STTEPTANG-KVIVGMSGGVDSSVSALLLLQQGYEVEGLFMKNWDEDDGTEY---CTAKE 63
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D+ A+AVC ++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF F++
Sbjct: 64 DLADAEAVCAKLGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKVFLE 123
Query: 130 AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFP 189
+ D +A+GHY + +E +P +L+ D KDQ+YFL + +A + R +FP
Sbjct: 124 YAEMLGADKIATGHYVR----QGVREGRPRLLK-GLDGNKDQSYFLHAVPEAAIARTLFP 178
Query: 190 LGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDF 249
+G + K VR A DL +KDS GICF+G+ +F +F+ +++ G+I E GD
Sbjct: 179 VGELEKPAVRALAEHHDLVTAKKKDSTGICFIGERRFRDFLQQYLPAQPGMI-ETPEGDV 237
Query: 250 LGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
+GKH G +YT+GQRQGL + G PWYV KD+ NV+ + +
Sbjct: 238 IGKHMGLMYYTLGQRQGLGIGGLANYSEDPWYVAAKDLARNVLIAVQGKHHPLLYTDTLA 297
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQ-GLAA 362
+ W++G PP + R K R+ +C I + DG +V + +D Q +
Sbjct: 298 TEKMDWVAGEPPTQQGRFTAKTRYRQS--DCPCEIRALADG----SVEVVFDDPQWAVTP 351
Query: 363 GQFAAFYQGTRCIGSGVILESW 384
GQ Y G C+G GVI +W
Sbjct: 352 GQSLVLYDGDICLGGGVIRATW 373
>gi|217964341|ref|YP_002350019.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes HCC23]
gi|386008283|ref|YP_005926561.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes L99]
gi|386026885|ref|YP_005947661.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Listeria monocytogenes M7]
gi|254811452|sp|B8DDZ8.1|MNMA_LISMH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|217333611|gb|ACK39405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes HCC23]
gi|307571093|emb|CAR84272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes L99]
gi|336023466|gb|AEH92603.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Listeria monocytogenes M7]
Length = 371
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/372 (36%), Positives = 200/372 (53%), Gaps = 24/372 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ D+
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGAMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETGDFLGKHW 254
R+ A + L ++KDS GICF+G+ F +F++ ++ GEM + G+ LGKH
Sbjct: 180 REIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTL-----NGEVLGKHD 234
Query: 255 GFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
G +YTIGQR GL + G PW+VV KD+K NV+FV + ++ + + +
Sbjct: 235 GLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTN 294
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ K R+ + + + EDG A V ++ + + GQ FY G
Sbjct: 295 AAKPKTIECTAKFRYRQ--TDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGD 349
Query: 373 RCIGSGVILESW 384
C+G G I W
Sbjct: 350 ICLGGGTIDTVW 361
>gi|421728555|ref|ZP_16167708.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella oxytoca M5al]
gi|410370719|gb|EKP25447.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella oxytoca M5al]
Length = 368
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 211/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIISVD-GDEVGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 238 HTLGQRKGLGIGGIKDGGEDPWYVVDKDVENNILVVAQGH----DHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C+ ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPVTGTLRCTVKTRYRQTDIPCS--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y+G C+G G+I
Sbjct: 349 YRGEVCLGGGII 360
>gi|196044752|ref|ZP_03111986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 03BB108]
gi|196024240|gb|EDX62913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 03BB108]
Length = 372
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 205/374 (54%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 5 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 59
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 60 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 119
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 120 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 174
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 175 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 233
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 234 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 293
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ ++ I EN + E + + GQ FY
Sbjct: 294 SNEAKEKEFKCTAKFRYRQEDNKVSVQIVD-----ENTVRILCDEPIRAITPGQAVVFYD 348
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 349 GDECLGGATIDEVY 362
>gi|424933992|ref|ZP_18352364.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|407808179|gb|EKF79430.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
Length = 368
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLSADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G IL + G+ +G H G +
Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKILTVD-GEEIGTHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ P + R K R+ C + E+ V+ E + GQ A F
Sbjct: 294 WVNREPLQGTLRCTVKTRYRQTDIPCTVTALD-----EDRIEVRFDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YLGEVCLGGGII 360
>gi|30022472|ref|NP_834103.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus ATCC 14579]
gi|206969454|ref|ZP_03230408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1134]
gi|296504889|ref|YP_003666589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis BMB171]
gi|384188469|ref|YP_005574365.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar chinensis CT-43]
gi|449091364|ref|YP_007423805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar kurstaki str. HD73]
gi|452200860|ref|YP_007480941.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|29898030|gb|AAP11304.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
[Bacillus cereus ATCC 14579]
gi|206735142|gb|EDZ52310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1134]
gi|296325941|gb|ADH08869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis BMB171]
gi|326942178|gb|AEA18074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar chinensis CT-43]
gi|449025121|gb|AGE80284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar kurstaki str. HD73]
gi|452106253|gb|AGG03193.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 372
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 208/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 5 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 59
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 60 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 119
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 120 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 174
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 175 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 233
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 234 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 293
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + +C + + + ++ V+ EN + E + + GQ FY
Sbjct: 294 SN--KEKETEFKCTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 348
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 349 GDECLGGATIDEVY 362
>gi|390454901|ref|ZP_10240429.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus peoriae KCTC 3763]
Length = 375
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 203/369 (55%), Gaps = 23/369 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + F C EED + + VC+
Sbjct: 11 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDTDEF-GRCTAEEDAEDVRRVCE 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+D+P V+ EY+ V SY ++EY+ GRTPNPDV+CN IKFG F++ + DYV
Sbjct: 68 QIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKALDLGADYV 127
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+VV +E L D KDQTYFL+ LSQ QL R +FP+G + K EVR
Sbjct: 128 ATGHYARVV-----EEDGRFTLLRGVDSNKDQTYFLNALSQKQLSRAMFPIGHLPKPEVR 182
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS G+CF+G+ F EF++ ++ G +++ TG+ G+H G +Y
Sbjct: 183 KIAESAGLYTAKKKDSTGVCFIGERNFKEFLSGYLPAKGGDMVDIATGEVKGRHDGLMYY 242
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLS 311
T+GQRQGL + G PW+V +KD++ N+++V + D+ L+ G + W+
Sbjct: 243 TLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQG----DRHHSLYSTGLIATDVNWIE 298
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G +C + + + + +E+G ++ + + GQ FY G
Sbjct: 299 GADVRPSGEFRCTAKFRYRQPDQQVTLRWLENGTVHVV---FDVHQKAITPGQAVVFYDG 355
Query: 372 TRCIGSGVI 380
RC+G G I
Sbjct: 356 ERCLGGGTI 364
>gi|212712841|ref|ZP_03320969.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM
30120]
gi|212684533|gb|EEB44061.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM
30120]
Length = 385
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 205/373 (54%), Gaps = 29/373 (7%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVC
Sbjct: 25 IKVIVGMSGGVDSSVSAYLLQQQGYQVIGLFMKNWEEDDDEEY---CSAATDLADAQAVC 81
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFD 137
D++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A + D
Sbjct: 82 DKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 141
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
Y+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K E
Sbjct: 142 YIATGHYVR----RRDVDGKSQLLR-GLDNNKDQSYFLYTLSHEQVAKSLFPVGELEKPE 196
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + L +KDS GICF+G+ KF +F+ R++ G I+ + G+ +G+H G
Sbjct: 197 VRRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIVTVD-GEIIGQHEGLM 255
Query: 258 FYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SL 307
++T+GQR+GL + G PWYVV+KDV+NN + V++ + + RL VG L
Sbjct: 256 YHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNQLIVAQGH----EHPRLMSVGLIAQQL 311
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+ P E R K R+ C + E I V+ + GQ A
Sbjct: 312 DWVDRQPLTEPLRCVVKTRYRQADIPCTI----TPLSAEKIQVI-FDYPVAAVTPGQSAV 366
Query: 368 FYQGTRCIGSGVI 380
FY C+G GVI
Sbjct: 367 FYIDEVCLGGGVI 379
>gi|30264466|ref|NP_846843.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Ames]
gi|47529924|ref|YP_021273.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187287|ref|YP_030539.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Sterne]
gi|254684152|ref|ZP_05148012.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str.
CNEVA-9066]
gi|254736499|ref|ZP_05194205.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Western
North America USA6153]
gi|254741537|ref|ZP_05199224.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Kruger
B]
gi|254751364|ref|ZP_05203401.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Vollum]
gi|254757696|ref|ZP_05209723.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str.
Australia 94]
gi|421506649|ref|ZP_15953572.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. UR-1]
gi|421638466|ref|ZP_16079062.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. BF1]
gi|73919893|sp|Q81JE5.1|MNMA_BACAN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|30259124|gb|AAP28329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. Ames]
gi|47505072|gb|AAT33748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. 'Ames Ancestor']
gi|49181214|gb|AAT56590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. Sterne]
gi|401823642|gb|EJT22789.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. UR-1]
gi|403394892|gb|EJY92132.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. BF1]
Length = 371
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ N + + D EN + E + + GQ FY
Sbjct: 293 SNEAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|359393446|ref|ZP_09186499.1| tRNA-specific 2-thiouridylase mnmA [Halomonas boliviensis LC1]
gi|357970693|gb|EHJ93138.1| tRNA-specific 2-thiouridylase mnmA [Halomonas boliviensis LC1]
Length = 388
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 205/383 (53%), Gaps = 25/383 (6%)
Query: 10 SCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE 69
+ + P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C +E
Sbjct: 15 TITEPSANG-KVIVGMSGGVDSSVSALLLMQQGYEVEGLFMKNWDEDDGTEY---CTAKE 70
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D+ A+AVC ++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF F++
Sbjct: 71 DLADAEAVCAKLGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKVFLE 130
Query: 130 AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFP 189
+ D +A+GHY + + +P +L+ D KDQ+YFL + +A + R +FP
Sbjct: 131 YAEMLGADKIATGHYVR----QGMRNGRPRLLK-GLDGNKDQSYFLHAVPEAAIARTLFP 185
Query: 190 LGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDF 249
+G + K VR A Q +L +KDS GICF+G+ +F +F+ +++ G I E GD
Sbjct: 186 VGELEKPAVRALAEQHELITAKKKDSTGICFIGERRFRDFLQQYLPAQPGTI-ETPDGDV 244
Query: 250 LGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
+G+H G +YT+GQRQGL + G PWYV KD+ NV+ + +
Sbjct: 245 IGEHMGLMYYTLGQRQGLGIGGLANYSEEPWYVAAKDLDRNVLVAVQGKHDQLLYSDTLT 304
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQ--GLA 361
++ W++G PP + R K R+ +C+ + + DGG V+++ DD +
Sbjct: 305 TEAMDWVAGEPPVQQGRFTAKTRYRQS--DCDCEMRALPDGG-----VEVTFDDPQWAVT 357
Query: 362 AGQFAAFYQGTRCIGSGVILESW 384
GQ Y G C+G GVI +W
Sbjct: 358 PGQSLVLYDGDICLGGGVIRATW 380
>gi|385331827|ref|YP_005885778.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter adhaerens HP15]
gi|311694977|gb|ADP97850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter adhaerens HP15]
Length = 395
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 137/378 (36%), Positives = 203/378 (53%), Gaps = 19/378 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W ++D + C D+ A+AV D
Sbjct: 17 RVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTEY---CTAMTDLADAQAVAD 73
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + L EYW V + + EY+ GRTPNPD+LCN +KF AF+D ++ DY+
Sbjct: 74 AIGIKLHTASFAAEYWDRVFEHFLSEYQAGRTPNPDILCNKEVKFRAFLDYAITLGADYI 133
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ A K +L+ D KDQ+YFL +S ++ R +FP+G + K EVR
Sbjct: 134 ATGHYAR-QRPIAGSTGKAQLLK-GLDPNKDQSYFLHAVSGDRIARTLFPVGELEKPEVR 191
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q D+KDS GICF+G+ KF +F+ +++ G I E G +G+H G ++
Sbjct: 192 RIAEQQGFVTHDKKDSTGICFIGERKFKDFLKQYLPAQPGDI-ETPDGQKIGRHQGLMYH 250
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G PWYV EKD+ NV+ + + R G + W++G
Sbjct: 251 TIGQRQGLGIGGLSEFGDEPWYVAEKDLSRNVLVAVQGKHHPLLFSRGLVSGPIDWVAGE 310
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P R + K R+ +C +++ DGG V + + + GQ FY G
Sbjct: 311 APAGHFRCKAKTRYRQPDQDCQVLL---IDGG---VRVDFDDAQRAVTPGQSVVFYDGEV 364
Query: 374 CIGSGVILESW-DDQGFP 390
C+G GVI ++W DD+ P
Sbjct: 365 CLGGGVIEQTWRDDEPLP 382
>gi|283784944|ref|YP_003364809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Citrobacter rodentium ICC168]
gi|282948398|emb|CBG87986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Citrobacter rodentium ICC168]
Length = 368
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 210/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G +SK +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELSKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A +L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLELVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDEIGQHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ LP R K R+ C ++ +++ + I V+ E + GQ A F
Sbjct: 294 WVDRLPFTGTMRCTVKTRYRQTDIPCT--VKALDN--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|302876907|ref|YP_003845540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium cellulovorans 743B]
gi|307687595|ref|ZP_07630041.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulovorans 743B]
gi|302579764|gb|ADL53776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium cellulovorans 743B]
Length = 373
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 206/370 (55%), Gaps = 24/370 (6%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +KV + +SGGVDSSVA L + G+ ++ W ED EN C +D + +
Sbjct: 6 KNIKVVLGVSGGVDSSVAALELKNQGYDVIGVFMNNWDDED-EN--GVCTSVQDFEDVRK 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VCD + VP V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D ++
Sbjct: 63 VCDSISVPYYSVNFQKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDFALTVGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A GHYA+V D EYK L + D+ KDQTYFL L+Q QL + +FP+G + K
Sbjct: 123 DYIAMGHYAQV--DFRDGEYK---LLRAADENKDQTYFLCKLNQYQLSKSMFPIGHLRKP 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + +L +KDS G+CF+G+ F +F+ ++ G ++ + G+ +G+H G
Sbjct: 178 EVREKAREANLVTATKKDSTGVCFIGEKNFRQFLNNYLPAKSGPMMTLD-GNVMGEHIGL 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWL 310
YT+GQR+GL + G PW+VV+KD+K N+++V + ++ RL+ G + W+
Sbjct: 237 MHYTLGQRKGLGIGGAGEPWFVVDKDLKKNILYVVQG----EQDPRLYSYGLTAVEVSWI 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ C + + +++ ED N +V+ E + + GQ FY
Sbjct: 293 S--EKEKPKTFNCTAKFRYRQKDQGVIVHQRED---NTCIVEFIEPQKAITPGQIVVFYD 347
Query: 371 GTRCIGSGVI 380
G C+G G I
Sbjct: 348 GDECLGGGTI 357
>gi|422017733|ref|ZP_16364296.1| tRNA-specific 2-thiouridylase MnmA [Providencia alcalifaciens
Dmel2]
gi|414105326|gb|EKT66885.1| tRNA-specific 2-thiouridylase MnmA [Providencia alcalifaciens
Dmel2]
Length = 385
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 205/373 (54%), Gaps = 29/373 (7%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVC
Sbjct: 25 IKVIVGMSGGVDSSVSAYLLQQQGYQVIGLFMKNWEEDDDEEY---CSAATDLADAQAVC 81
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFD 137
D++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A + D
Sbjct: 82 DKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 141
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
Y+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K E
Sbjct: 142 YIATGHYVR----RRDVDGKSQLLR-GLDNNKDQSYFLYTLSHEQVAKSLFPVGELEKPE 196
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + L +KDS GICF+G+ KF +F+ R++ G I+ + G+ +G+H G
Sbjct: 197 VRRIAEEIGLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIVTVD-GEIIGQHEGLM 255
Query: 258 FYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SL 307
++T+GQR+GL + G PWYVV+KDV+NN + V++ + + RL VG L
Sbjct: 256 YHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNQLIVAQGH----EHPRLMSVGLIAQQL 311
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+ P E R K R+ C + E I V+ + GQ A
Sbjct: 312 DWVDRQPLTEPLRCVVKTRYRQADIPCTI----TPLSAEKIQVI-FDYPVAAVTPGQSAV 366
Query: 368 FYQGTRCIGSGVI 380
FY C+G GVI
Sbjct: 367 FYIDEVCLGGGVI 379
>gi|423107862|ref|ZP_17095557.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella oxytoca 10-5243]
gi|376386595|gb|EHS99306.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella oxytoca 10-5243]
Length = 383
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 210/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEELDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIISVD-GDEVGEHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 253 HTLGQRKGLGIGGIKDGGEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ +C ++ ++D + I V+ +E + GQ A F
Sbjct: 309 WVDREPLTGTLRCTVKTRYRQTDISCT--VKALDD--DRIEVI-FNEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|384182215|ref|YP_005567977.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324328299|gb|ADY23559.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 371
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ N + + D EN + E + + GQ FY
Sbjct: 293 SNEAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVHILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|365158811|ref|ZP_09355002.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. 7_6_55CFAA_CT2]
gi|410676783|ref|YP_006929154.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis Bt407]
gi|423385896|ref|ZP_17363152.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1X1-2]
gi|423411808|ref|ZP_17388928.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3O-2]
gi|423426529|ref|ZP_17403560.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3X2-2]
gi|423432406|ref|ZP_17409410.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4O-1]
gi|423437841|ref|ZP_17414822.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4X12-1]
gi|423502917|ref|ZP_17479509.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HD73]
gi|423527747|ref|ZP_17504192.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB1-1]
gi|423582604|ref|ZP_17558715.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD014]
gi|423585125|ref|ZP_17561212.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD045]
gi|423631120|ref|ZP_17606867.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD154]
gi|423634781|ref|ZP_17610434.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD156]
gi|423640524|ref|ZP_17616142.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD166]
gi|423650260|ref|ZP_17625830.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD169]
gi|423657350|ref|ZP_17632649.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD200]
gi|73919895|sp|Q812R6.2|MNMA_BACCR RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|363626305|gb|EHL77296.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. 7_6_55CFAA_CT2]
gi|401103876|gb|EJQ11853.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3O-2]
gi|401111276|gb|EJQ19175.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3X2-2]
gi|401117162|gb|EJQ25000.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4O-1]
gi|401120996|gb|EJQ28792.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4X12-1]
gi|401213483|gb|EJR20224.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD014]
gi|401233768|gb|EJR40254.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD045]
gi|401264487|gb|EJR70599.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD154]
gi|401278767|gb|EJR84697.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD156]
gi|401279585|gb|EJR85507.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD166]
gi|401282678|gb|EJR88577.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD169]
gi|401290093|gb|EJR95797.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD200]
gi|401635952|gb|EJS53707.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1X1-2]
gi|402451410|gb|EJV83229.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB1-1]
gi|402459138|gb|EJV90875.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HD73]
gi|409175912|gb|AFV20217.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis Bt407]
Length = 371
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 208/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + +C + + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SN--KEKETEFKCTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|229198523|ref|ZP_04325227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus m1293]
gi|228585026|gb|EEK43140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus m1293]
Length = 376
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMAKEAGLVTAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ N + + D EN + E + + GQ FY
Sbjct: 298 SNKAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|333896666|ref|YP_004470540.1| tRNA-specific 2-thiouridylase mnmA [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111931|gb|AEF16868.1| tRNA-specific 2-thiouridylase mnmA [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 369
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 143/380 (37%), Positives = 215/380 (56%), Gaps = 27/380 (7%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
+ +KV V +SGGVDSSV+ LL G+ ++K W +ED + C ED +
Sbjct: 5 NQNVKVVVGMSGGVDSSVSALLLKEQGYDVIGIFMKNWDEEDDSGY---CTAAEDYEDVV 61
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
VCD++ +P ++ T EYW V Y + EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 62 RVCDKIGIPYYSINFTKEYWDRVFQYFLNEYKSGRTPNPDVMCNKEIKFKAFLEFSMKIG 121
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
DY+A+GHYA++ H D YK + DK KDQTYFL L Q QL + +FP+G + K
Sbjct: 122 ADYIATGHYARIEH--IDGHYK---MLKGVDKNKDQTYFLCELGQKQLSKTMFPIGHLDK 176
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + L D+KDS GICF+G+ KF EF+ + + G I + +G LG+H G
Sbjct: 177 SEVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLPAKPGEIRDL-SGRVLGRHDG 235
Query: 256 FWFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SL 307
FYT+GQR+G+ + G PW+VV+KDV+NN+++V++ DK L+ G ++
Sbjct: 236 LMFYTLGQRRGIGIGGVGTGEPWFVVDKDVENNILYVAQG----DKNPALYSYGLFTKNV 291
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+ G L+CK + + ++M+ ++G +V + + + GQF
Sbjct: 292 NWIDG--DMNFDELRCKAKFRYRQPDQDVMVFKKDNG----YLVVFDKPQRAVTPGQFVV 345
Query: 368 FYQGTRCIGSGVILESWDDQ 387
FY G C+G GVI + D+
Sbjct: 346 FYDGEYCLGGGVIETIYKDE 365
>gi|381210448|ref|ZP_09917519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase
[Lentibacillus sp. Grbi]
Length = 369
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 205/374 (54%), Gaps = 25/374 (6%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++ +V V +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 1 MKDKQNTRVVVGMSGGVDSSVAALLLKEEGYDVVGIFMKNWDDTD-EN--GVCTATEDYD 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+D+P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF++
Sbjct: 58 DVVRVCNQLDIPYFAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ DY+A+GHYA+V + E + D KDQTYFL+ LS L++++FPLG
Sbjct: 118 SLGADYLATGHYAQVRENDGKYEMLRGI-----DDNKDQTYFLNQLSHDVLEKVMFPLGH 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + DL +KDS GICF+G+ F EF++ ++ G ++ G G+
Sbjct: 173 LDKREVREIAKEHDLVTASKKDSTGICFIGERNFKEFLSEYLPAQPGQ-MKTLDGKEKGR 231
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----S 306
H G +YTIGQRQGL + G PW+VV K++ N+++V + + +L+ G
Sbjct: 232 HDGLMYYTIGQRQGLGIGGSGEPWFVVGKNLDENILYVDQGF----DNDKLYSDGLIASD 287
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ W++ +P E S C + + + + +E+G + V+ +E + + GQ
Sbjct: 288 VNWINNIPDESFS---CTAKFRYRQKDSAVTVTKMENGKVH---VEFAEKQRAITPGQAV 341
Query: 367 AFYQGTRCIGSGVI 380
FY C+G G I
Sbjct: 342 VFYNSEVCLGGGTI 355
>gi|228923148|ref|ZP_04086439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228941564|ref|ZP_04104113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228954681|ref|ZP_04116704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228960668|ref|ZP_04122313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|228974494|ref|ZP_04135061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228981088|ref|ZP_04141389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis Bt407]
gi|229048104|ref|ZP_04193677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH676]
gi|229071905|ref|ZP_04205116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus F65185]
gi|229081661|ref|ZP_04214156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock4-2]
gi|229111869|ref|ZP_04241415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock1-15]
gi|229129677|ref|ZP_04258645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-Cer4]
gi|229146967|ref|ZP_04275331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST24]
gi|229152600|ref|ZP_04280789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus m1550]
gi|229180672|ref|ZP_04308012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 172560W]
gi|229192608|ref|ZP_04319569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus ATCC 10876]
gi|228590915|gb|EEK48773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus ATCC 10876]
gi|228602817|gb|EEK60298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 172560W]
gi|228630861|gb|EEK87501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus m1550]
gi|228636566|gb|EEK93032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST24]
gi|228653794|gb|EEL09664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-Cer4]
gi|228671625|gb|EEL26923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock1-15]
gi|228701665|gb|EEL54156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock4-2]
gi|228711201|gb|EEL63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus F65185]
gi|228723259|gb|EEL74631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH676]
gi|228778629|gb|EEM26895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis Bt407]
gi|228785211|gb|EEM33223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228799032|gb|EEM46004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|228805008|gb|EEM51604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228818120|gb|EEM64196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228836527|gb|EEM81877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 376
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 208/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + +C + + + ++ V+ EN + E + + GQ FY
Sbjct: 298 SN--KEKETEFKCTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|218899565|ref|YP_002447976.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus G9842]
gi|218543622|gb|ACK96016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus G9842]
Length = 372
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 205/374 (54%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 5 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 59
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 60 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 119
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 120 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 174
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 175 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 233
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 234 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 293
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E + K R+ N + + D EN + E + + GQ FY
Sbjct: 294 SNKVKETEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 348
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 349 GDECLGGATIDEVY 362
>gi|239827834|ref|YP_002950458.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70]
gi|239808127|gb|ACS25192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. WCH70]
Length = 371
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 206/368 (55%), Gaps = 16/368 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 6 KDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVVR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+
Sbjct: 63 VCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHALSIGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DYVA+GHYA+V + D EYK + D+ KDQTYFL+ L Q+ L +++FP+G + K
Sbjct: 123 DYVATGHYARVEYR--DGEYK---MLRGVDQNKDQTYFLNQLGQSVLSKVMFPIGHLEKA 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VR+ A L +KDS GICF+G+ F EF++ ++ G I++ G+ GKH G
Sbjct: 178 QVRQIAKDAGLVTATKKDSTGICFIGERDFKEFLSNYLPAKPG-IMQTLDGEVKGKHDGV 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+YTIGQR GL + G PW+VV K+VK N+++V++ + + ++ W+S
Sbjct: 237 MYYTIGQRHGLGIGGSGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVNWVSDRK 296
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + QC + + + + ++D + + VV E + + GQ FY G C
Sbjct: 297 P--TNSFQCTAKFRYRQPDTGVTVHIIDD--DKVEVV-FDEPVRAVTPGQAVVFYNGEEC 351
Query: 375 IGSGVILE 382
+G G I E
Sbjct: 352 LGGGTIDE 359
>gi|417983366|ref|ZP_12624004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 21/1]
gi|417992807|ref|ZP_12633159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei CRF28]
gi|417996155|ref|ZP_12636438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei M36]
gi|418014884|ref|ZP_12654473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei Lpc-37]
gi|410528312|gb|EKQ03165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 21/1]
gi|410532598|gb|EKQ07300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei CRF28]
gi|410535864|gb|EKQ10474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei M36]
gi|410552706|gb|EKQ26721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei Lpc-37]
Length = 377
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 196/371 (52%), Gaps = 18/371 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 11 IRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVA 67
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY
Sbjct: 68 SEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNADY 127
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHYA+V D+ +L D KDQTYFLS LSQ QLK+ +FP+G + K EV
Sbjct: 128 IAMGHYAQV---KTDENGIVHMLR-GADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPEV 183
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ F +F++ ++ G ++ + G +G H G +
Sbjct: 184 RKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEMGTHDGLMY 242
Query: 259 YTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
YTIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 243 YTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGQ 302
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P E + + K R+ + + + + +DG A V + + GQ FY G
Sbjct: 303 APTEGTHMTAKFRYRQ--RDTGVTLHYHDDG---TATVDFDVPVRAITPGQAVVFYDGDE 357
Query: 374 CIGSGVILESW 384
C+G G I ++
Sbjct: 358 CLGGGTIDAAY 368
>gi|229186636|ref|ZP_04313797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BGSC 6E1]
gi|228596895|gb|EEK54554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BGSC 6E1]
Length = 376
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 206/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E+ + K R+ N + + D EN + E + + GQ FY
Sbjct: 298 SNEAKEKEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYG 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|152969695|ref|YP_001334804.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|365139675|ref|ZP_09346022.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella sp. 4_1_44FAA]
gi|425077225|ref|ZP_18480328.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425080966|ref|ZP_18484063.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425087858|ref|ZP_18490951.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425091028|ref|ZP_18494113.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428150993|ref|ZP_18998746.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]
gi|150954544|gb|ABR76574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|363654288|gb|EHL93203.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella sp. 4_1_44FAA]
gi|405592934|gb|EKB66386.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405604582|gb|EKB77703.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405604776|gb|EKB77883.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405613185|gb|EKB85933.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|427539054|emb|CCM94884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 388
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 27 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 83
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 84 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 143
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 144 IATGHYVR----RADVDGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 198
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G IL + G+ +G H G +
Sbjct: 199 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKILTVD-GEEIGTHQGLMY 257
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 258 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 313
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ P + R K R+ C + E+ V+ E + GQ A F
Sbjct: 314 WVNREPLQGTLRCTVKTRYRQTDIPCTVTALD-----EDRIEVRFDEPVAAVTPGQSAVF 368
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 369 YLGEVCLGGGII 380
>gi|262043152|ref|ZP_06016290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|259039540|gb|EEW40673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
Length = 388
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 27 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 83
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 84 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 143
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 144 IATGHYVR----RADVDGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 198
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G IL + G+ +G H G +
Sbjct: 199 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKILTVD-GEEIGTHQGLMY 257
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 258 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 313
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ P + R K R+ C + E+ V+ E + GQ A F
Sbjct: 314 WVNREPLQGTLRCTVKTRYRQTDIPCTVTALD-----EDRIEVRFDEPVAAVTPGQSAVF 368
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 369 YLGEVCLGGGII 380
>gi|56475956|ref|YP_157545.1| tRNA-specific 2-thiouridylase MnmA [Aromatoleum aromaticum EbN1]
gi|81598997|sp|Q5P7R7.1|MNMA_AROAE RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|56311999|emb|CAI06644.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
[Aromatoleum aromaticum EbN1]
Length = 374
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 200/374 (53%), Gaps = 20/374 (5%)
Query: 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
G+KV V +SGGVDSSV LL G T ++K W +D + + C +D+ +V
Sbjct: 9 GMKVVVGMSGGVDSSVTALLLKQQGFDVTGLFMKNWEDDDDDEY---CSTRQDLVDVASV 65
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
CD + + LEVV+ + EY V + + EY GRTPNPDVLCN+ IKF F+D ++ D
Sbjct: 66 CDVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDVLCNSEIKFRCFLDHAMALGAD 125
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+A+GHYA+V + D + +L+ ++D KDQ+YFL L+QAQL + +FPLG + K +
Sbjct: 126 RIATGHYAQVREWANDGRSEYQLLK-AEDGTKDQSYFLYRLNQAQLAKTLFPLGALYKRD 184
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + L ++KDS GICF+G+ F EF+ R++ G I + G +G+H G
Sbjct: 185 VRRIAAEAGLHVAEKKDSTGICFIGERPFREFLMRYLPMRPGEIRNLDDGRVIGEHQGLM 244
Query: 258 FYTIGQRQGLRLPG-----------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
++TIGQR+GL + G WYV KDVK NV++ + + +
Sbjct: 245 YHTIGQRKGLHIGGIKGRQDGAGEHDAWYVAGKDVKANVLYAVQGHEHPALLKTRLSATD 304
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W++G P K R+ C IE + DGG I +E L GQ
Sbjct: 305 LHWIAGRDPHTHWVYTAKPRYRTPDMPCE--IEALVDGGAEIV---FAEPQWALTPGQSV 359
Query: 367 AFYQGTRCIGSGVI 380
Y+ C+G GVI
Sbjct: 360 VVYESKVCLGGGVI 373
>gi|253989217|ref|YP_003040573.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photorhabdus asymbiotica]
gi|253780667|emb|CAQ83829.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photorhabdus asymbiotica]
Length = 367
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 200/368 (54%), Gaps = 21/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A++VCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNEEY---CSAATDLADAQSVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++D+ L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLDIELHTVNFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL L+ Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RKDINGKSQLLR-GLDNNKDQSYFLYTLNHQQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF +F+ R++ G I+ + G LG+H G +
Sbjct: 180 RRIAEKIGLVTAKKKDSTGICFIGERKFRDFLGRYLPAKPGPIVTVD-GKNLGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV++KD++NN++ V++ + L W+
Sbjct: 239 HTLGQRKGLGIGGTKDGNEEPWYVIDKDIQNNILIVAQGHEHPSLMSTGLIAQQLHWVDK 298
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E K R+ C V E+ V+ + + GQ A FYQG
Sbjct: 299 QPLTEEIHCVVKTRYRQQDIPCT-----VTPINEDKIKVRFANPVAAVTPGQSAVFYQGE 353
Query: 373 RCIGSGVI 380
C+G GVI
Sbjct: 354 ICLGGGVI 361
>gi|336392805|ref|ZP_08574204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus coryniformis subsp. torquens KCTC 3535]
Length = 374
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 203/380 (53%), Gaps = 17/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V LSGGVDS+VA LL G+ ++K W D + C ED K
Sbjct: 1 MNENANTRVVVGLSGGVDSTVAALLLKQQGYDVVGVFMKNW---DDTDEMGVCTATEDFK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
+ +Q+ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVVKIANQIGIPYYSINFEKEYWDRVFEYFLDEYKHGRTPNPDVMCNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ D + +L D KDQTYFLS LSQ QL +++FPLG
Sbjct: 118 DLGADYIATGHYARI---RRDADGTAHMLR-GVDGNKDQTYFLSQLSQNQLNKVMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A ++DL +KDS GICF+G+ F +F+++++ G ++ + G+ G
Sbjct: 174 MTKPEVREIAAKYDLATAKKKDSMGICFIGEKNFKQFLSQYLPAQPGKMMTVD-GEVKGT 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL + G PW+V+ KD+ N ++V + +++
Sbjct: 233 HDGLMYYTIGQRQGLGIGGNGTSNDPWFVIGKDLTTNTLYVGQGFHNEHLYATHLTASKF 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ + L + + + R+ + + + D + A ++ E + + GQ
Sbjct: 293 NFTTDLDRGDTFHVTAEFRYRQK--DTGVTVHMNAD--QTTATIEFDEPVRAITPGQAVV 348
Query: 368 FYQGTRCIGSGVILESWDDQ 387
Y G C+GSG I +++D+
Sbjct: 349 LYDGDECLGSGTIDAAYNDE 368
>gi|365919917|ref|ZP_09444276.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cardiobacterium valvarum F0432]
gi|364578718|gb|EHM55913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cardiobacterium valvarum F0432]
Length = 371
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 206/371 (55%), Gaps = 24/371 (6%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K K+AV +SGGVDSSV LL AG+ +K W +E + + + C EED++ A+
Sbjct: 8 KTAKIAVGISGGVDSSVTAYLLKEAGYDIFGIIMKNW-EETYSSGY--CTLEEDLEDARD 64
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
+C+ + +PL V+ EY + V + + EY+ GRTPNPDVLCN IKF ++
Sbjct: 65 ICETIGIPLYTVNFVAEYHERVFKHFLAEYQAGRTPNPDVLCNREIKFAELAHYAAAHGA 124
Query: 137 DYVASGHYAKVV-HSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
DY+A+GHYA+ H+ A YK D KDQ+YFLS ++ QL R IFPLG ++K
Sbjct: 125 DYLATGHYARRGEHTGAPALYK------GIDGSKDQSYFLSQITPGQLARAIFPLGGLAK 178
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A Q L D+KDS GICF+G+ F +F++ ++ G I+ A+ G ++G+H+G
Sbjct: 179 SEVRRIAEQAGLVTYDKKDSTGICFIGERPFRDFLSTYLPTQPGKIITAQ-GAWIGEHFG 237
Query: 256 FWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKW 309
+YTIGQRQGL + G PWYV++K++ +N + V + + + L L W
Sbjct: 238 LMYYTIGQRQGLGIGGVAGASEEPWYVLDKNLADNTLIVGQGEHPLLYHQAL-TARQLSW 296
Query: 310 LSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
L+ P+E K R+ C + G++ V ++ + + GQ+ Y
Sbjct: 297 LN-EAPQENHIYTAKTRYRQADQPCRIQWR-----GDDEIHVAFAQPQRAVTPGQYLVLY 350
Query: 370 QGTRCIGSGVI 380
G RC+G GVI
Sbjct: 351 DGDRCLGGGVI 361
>gi|285018226|ref|YP_003375937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas albilineans GPE PC73]
gi|283473444|emb|CBA15949.1| probable trna
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Xanthomonas albilineans GPE PC73]
Length = 397
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 134/383 (34%), Positives = 202/383 (52%), Gaps = 30/383 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW-------------FQEDFENFWTECP 66
++ V +SGGVDSSVA L GH+ + +++ W ED + T C
Sbjct: 5 RIMVGVSGGVDSSVAAWQLVQQGHTVSGLFMQNWADDGNGDVHDSASIAEDRKPKATTCR 64
Query: 67 WEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGA 126
E D + A AVC + +P + EYW+ V ++ + EY GRTPNPDVLCN +KF
Sbjct: 65 AEADRRDAVAVCGMLGIPFHFRDFSKEYWQGVFAHFLAEYAAGRTPNPDVLCNREVKFKH 124
Query: 127 FMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRL 186
F+DA + + +A+GHYA+V + D+ ++ L D+ KDQ+YFL L QAQL
Sbjct: 125 FLDAARDLGAERIATGHYARV--AFVDRRWR---LLRGLDRNKDQSYFLHQLGQAQLAAT 179
Query: 187 IFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAET 246
+FP+G + KE+VR+ A Q LP +KDS GICF+G+ F F++R++ G I +
Sbjct: 180 LFPVGELPKEQVRRIARQAGLPTHAKKDSTGICFIGERDFRTFLSRYLPARRGEIRDPHE 239
Query: 247 GDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRR 300
+ +H G +++T+GQR+GL + G PWYV+ KDV NV++V ++ S
Sbjct: 240 -QIVAEHPGVFYFTLGQREGLNIGGVRGRAAAPWYVIGKDVARNVLYVDQDRDSPHLMAT 298
Query: 301 LFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGL 360
R S W++G PP + + R+ C M+E +DG VQ + + +
Sbjct: 299 QLRSESAHWIAGAPPARHFACRAQTRYRQADEPC--MVEIRDDG---TLTVQFTRPQRAV 353
Query: 361 AAGQFAAFYQGTRCIGSGVILES 383
GQ YQG C+G VI +
Sbjct: 354 TPGQSLVLYQGEECLGGAVIATT 376
>gi|402564126|ref|YP_006606850.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis HD-771]
gi|423358568|ref|ZP_17336071.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD022]
gi|434377563|ref|YP_006612207.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis HD-789]
gi|401084440|gb|EJP92686.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD022]
gi|401792778|gb|AFQ18817.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis HD-771]
gi|401876120|gb|AFQ28287.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis HD-789]
Length = 371
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 205/374 (54%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E + K R+ N + + D EN + E + + GQ FY
Sbjct: 293 SNKVKETEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|329297165|ref|ZP_08254501.1| tRNA-specific 2-thiouridylase MnmA [Plautia stali symbiont]
Length = 370
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 211/385 (54%), Gaps = 34/385 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C +D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAADDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIKLHKINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAADDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVDGTSQLLR-GLDGNKDQSYFLYTLSHQQIAQSLFPVGKLEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q DL +KDS GICF+G+ KF +F+ R++ GVI E G+ +G+H G +
Sbjct: 180 RRIAEQLDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGVI-ETVDGEVVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV N + V++ RL VG L
Sbjct: 239 HTLGQRKGLGIGGRKESSDDPWYVVDKDVARNTLIVAQG----GDHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + I H G++ V+ E + GQ A F
Sbjct: 295 WVDRQPVTAALRCTVKTRYRQSDIPCEI-IPH----GDDRIEVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVILESWDDQGFPVCE 393
Y G C+G G+I +Q P+ E
Sbjct: 350 YLGDVCLGGGII-----EQRLPLAE 369
>gi|295706703|ref|YP_003599778.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus megaterium DSM 319]
gi|294804362|gb|ADF41428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus megaterium DSM 319]
Length = 370
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 206/366 (56%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 6 KDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ ++
Sbjct: 63 VCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAMTLGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA+V + D EYK + D KDQTYFL+ L Q QL +++FP+G I K
Sbjct: 123 DYLATGHYARVAYR--DGEYK---MLRGVDGNKDQTYFLNQLGQDQLSKVMFPIGEIEKS 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VR+ A + L +KDS GICF+G+ F EF+++++ GV ++ G+ GKH G
Sbjct: 178 KVREIAKEAGLATATKKDSTGICFIGERNFKEFLSQYLPAQPGV-MQTLDGEVKGKHDGL 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+YTIGQR GL + G PW+VV KD++ NV++V + +++ ++ W+S
Sbjct: 237 MYYTIGQRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHNELLYSTSLTATNVSWVS--E 294
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
+ S + C + + + +E V+D + I V+ +E + + GQ FY+ C
Sbjct: 295 RDWSSPMTCTAKFRYRQTDSAVTVEKVDD--DTIKVI-FAEPVRAITPGQAVVFYKDDEC 351
Query: 375 IGSGVI 380
+G I
Sbjct: 352 VGGATI 357
>gi|239631620|ref|ZP_04674651.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|417986664|ref|ZP_12627230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 32G]
gi|418007896|ref|ZP_12647768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UW4]
gi|239526085|gb|EEQ65086.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|410525125|gb|EKQ00031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 32G]
gi|410547981|gb|EKQ22202.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UW4]
Length = 376
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 196/371 (52%), Gaps = 18/371 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 10 IRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVA 66
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY
Sbjct: 67 SEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNADY 126
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHYA+V D+ +L D KDQTYFLS LSQ QLK+ +FP+G + K EV
Sbjct: 127 IAMGHYAQV---KTDENGIVHMLR-GADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPEV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ F +F++ ++ G ++ + G +G H G +
Sbjct: 183 RKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEMGTHDGLMY 241
Query: 259 YTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
YTIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 242 YTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGQ 301
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P E + + K R+ + + + + +DG A V + + GQ FY G
Sbjct: 302 APAEGTHMTAKFRYRQ--RDTGVTLHYHDDG---TATVDFDVPVRAITPGQAVVFYDGDE 356
Query: 374 CIGSGVILESW 384
C+G G I ++
Sbjct: 357 CLGGGTIDAAY 367
>gi|423561136|ref|ZP_17537412.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-A1]
gi|401201393|gb|EJR08258.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-A1]
Length = 371
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 207/377 (54%), Gaps = 24/377 (6%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYS---FDKKRRLFRVGSL 307
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ + + VG
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIAMNVG-- 290
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+S E + K R+ N + + D EN + E + + GQ
Sbjct: 291 -WVSNKVKETEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVV 344
Query: 368 FYQGTRCIGSGVILESW 384
FY G C+G I E +
Sbjct: 345 FYDGDECLGGATIDEVY 361
>gi|323497848|ref|ZP_08102859.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326]
gi|323317076|gb|EGA70076.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326]
Length = 369
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 206/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY V + + + + + D KDQ+YFL LS Q++R +FP+G + K EV
Sbjct: 125 IAMGHY---VRRTFPENGEKAQMLRGLDSNKDQSYFLYTLSSDQVERSLFPVGELEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF+EF+ +++ G I E G +G+H G +
Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGDI-ETPEGKVIGQHQGLMY 240
Query: 259 YTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PW+V +KD+K NV+ + K L W+
Sbjct: 241 HTLGQRKGLHIGGQKGGGGNEEPWFVGDKDLKRNVLIAVQGKDHPLLKSEGLIASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P +++ + K R+ C ++ ++D ENI V+ E + GQ A FYQ
Sbjct: 301 DRTPIKDVLKCTVKTRYRQTDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYQ 355
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 356 DEVCLGGGII 365
>gi|104781327|ref|YP_607825.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas entomophila L48]
gi|122403646|sp|Q1IBE4.1|MNMA_PSEE4 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|95110314|emb|CAK15021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas entomophila L48]
Length = 374
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 139/376 (36%), Positives = 204/376 (54%), Gaps = 29/376 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 13 RVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTEY---CTAREDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF+D S+ D +
Sbjct: 70 RIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHY + + + EL K D KDQ+YFL + ++ R +FP+G + K E
Sbjct: 130 ATGHYVRRRDTG-------ELTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGELEKPE 182
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR A + L +KDS GICF+G+ +FS+F+ +++ G I E G+ +G+H G
Sbjct: 183 VRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGEIQTTE-GEVIGRHHGLM 241
Query: 258 FYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWL 310
++TIGQRQGL + G PWYV+ KD+ NV+ V + N + + R L + W+
Sbjct: 242 YHTIGQRQGLGIGGLKDAGDEPWYVLHKDLARNVLVVGQGNEHPWLFSRALL-ASEIFWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+ + RL KVR+ G C L E E+G + E + + GQ FY
Sbjct: 301 NPIDLSSPRRLTAKVRYRQGDQQCTL--ERTENGYRAM----FDEPQRAVTPGQSVVFYD 354
Query: 371 GTRCIGSGVI--LESW 384
G C+G GVI E W
Sbjct: 355 GEVCLGGGVIETAEPW 370
>gi|407687594|ref|YP_006802767.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407290974|gb|AFT95286.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 369
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K A+AV D
Sbjct: 11 KVIVGMSGGVDSSVSAYLLQQQGYLVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVAD 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A + DY
Sbjct: 68 KLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGADY 127
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D ++K + D KDQ+YFL L + + + +FP+G I K V
Sbjct: 128 IATGHYVR--RREVDGKWK---MLRGLDNNKDQSYFLYTLGEEHVAKTLFPVGDIEKPLV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + L D+KDS GICF+G+ KF +F+AR++ GVI AE G+ +G+H G +
Sbjct: 183 RKIAEEQGLITHDKKDSTGICFIGERKFKDFLARYLPAQPGVIETAE-GEEIGRHEGLMY 241
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NV+ V + RL+ G L
Sbjct: 242 HTLGQRKGLHIGGLAKYGDDPWYVVDKDVARNVLIVGQGA----DHPRLYSKGLVAKQLH 297
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ E R K R+ C I ++D + V E + + GQ A F
Sbjct: 298 WVDRKTITEPVRAVVKTRYRQADIPCT--ITPIQD---DTIEVMFDEPQKAVTPGQSAVF 352
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 353 YSEEVCLGGGII 364
>gi|238894182|ref|YP_002918916.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|238546498|dbj|BAH62849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 388
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 27 KVIVGMSGGVDSSVSAYLLLQQGYKVGGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 83
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 84 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 143
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 144 IATGHYVR----RADVDGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 198
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G IL + G+ +G H G +
Sbjct: 199 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKILTVD-GEEIGTHQGLMY 257
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 258 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 313
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ P + R K R+ C + E+ V+ E + GQ A F
Sbjct: 314 WVNREPLQGTLRCTVKTRYRQTDIPCTVTALD-----EDRIEVRFDEPVAAVTPGQSAVF 368
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 369 YLGEVCLGGGII 380
>gi|172058087|ref|YP_001814547.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sibiricum
255-15]
gi|205816866|sp|B1YJE9.1|MNMA_EXIS2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|171990608|gb|ACB61530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Exiguobacterium sibiricum 255-15]
Length = 374
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 132/366 (36%), Positives = 200/366 (54%), Gaps = 16/366 (4%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V V +SGGVDSSV LL G++ ++K W D F C ED + AV +Q
Sbjct: 13 VVVGMSGGVDSSVTAYLLKQQGYNVIGIFMKNWDDTDENGF---CTATEDYEDVIAVANQ 69
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D + D+VA
Sbjct: 70 IGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLDHAMRLGADFVA 129
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA+ V+ D E+K L D KDQTYFL+ LSQ Q+ + +FP+G + K EVRK
Sbjct: 130 TGHYARAVYE--DGEHK---LLRGVDTNKDQTYFLNQLSQDQIAKAMFPIGHMEKSEVRK 184
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + +L +KDS GICF+G+ F +F+++++ G + + G +G+H G +YT
Sbjct: 185 IAEEANLATAKKKDSTGICFIGERNFKQFLSQYLPAQPGEMRTLD-GKTMGRHDGLMYYT 243
Query: 261 IGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+GQR GL + G PW+VV K++++N++FV + +++ + W + +P
Sbjct: 244 MGQRHGLGIGGDGEPWFVVGKNLQDNILFVEQGFHNELLYSEGLYASDISWTATMPAGTE 303
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
R K R+ + V DGG V E + + GQ FY G C+G
Sbjct: 304 FRCTAKFRYRQ---TDTPVTVRVLDGGR--LDVAFDERQRAITPGQAVVFYDGDVCLGGA 358
Query: 379 VILESW 384
I +++
Sbjct: 359 TIDDAY 364
>gi|310643522|ref|YP_003948280.1| tRNA-specific 2-thiouridylase mnma [Paenibacillus polymyxa SC2]
gi|309248472|gb|ADO58039.1| tRNA-specific 2-thiouridylase mnmA [Paenibacillus polymyxa SC2]
gi|392304277|emb|CCI70640.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus polymyxa M1]
Length = 373
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 206/369 (55%), Gaps = 23/369 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + F C EED + + VC+
Sbjct: 9 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDTDEF-GRCTAEEDAEDVRRVCE 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+D+P V+ EY+ V SY ++EY+ GRTPNPDV+CN IKFG F++ + DYV
Sbjct: 66 QIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKALDLGADYV 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+VV +E L D KDQTYFL+ LSQAQL R +FP+G + K EVR
Sbjct: 126 ATGHYARVV-----EEDGRFTLLRGVDSNKDQTYFLNALSQAQLSRTMFPIGHLPKPEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A L +KDS G+CF+G+ F EF++ ++ G +++ TG+ G+H G +Y
Sbjct: 181 RIAEAAGLYTAKKKDSTGVCFIGERNFKEFLSGYLPAKGGDMVDIATGEVKGRHDGLMYY 240
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLS 311
T+GQRQGL + G PW+V +KD++ N+++V + D+ L+ + W+
Sbjct: 241 TLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQG----DRHHSLYSTSLIATDVNWIE 296
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G +C + + + ++ + DG ++ V + + + + GQ FY G
Sbjct: 297 GADARPSGEFRCTAKFRYRQPDQQVTLQWLPDGTVHV-VFDIHQ--KAITPGQAVVFYDG 353
Query: 372 TRCIGSGVI 380
RC+G G I
Sbjct: 354 ERCLGGGTI 362
>gi|312871416|ref|ZP_07731511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 3008A-a]
gi|311093069|gb|EFQ51418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 3008A-a]
Length = 375
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/379 (35%), Positives = 199/379 (52%), Gaps = 20/379 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D C ED +
Sbjct: 1 MTDNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGV---CTATEDFE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW V Y + EY+ GRTPNPD++CN IKF +F+D
Sbjct: 58 DVKRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLEL--SKDKVKDQTYFLSHLSQAQLKRLIFPL 190
++ DY+A GHYAK V K V+ + KD KDQTYFLS ++Q QLK+ IFPL
Sbjct: 118 KLDADYIAMGHYAKTVTD------KNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPL 171
Query: 191 GCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250
+SK +VR A Q L +KDS GICF+G+ F F++ + M G I+ ++ G +
Sbjct: 172 ADLSKPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTSD-GRIV 230
Query: 251 GKHWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
GKH G +YTIGQR GL L G PW+VV K+++ N + V + Y S
Sbjct: 231 GKHSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDAS 290
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+ + +GLP + + + C + + ++ + + N V+ E + + GQ
Sbjct: 291 EVSFFTGLPSNDTT-IHCTAKF--RYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQA 347
Query: 366 AAFYQGTRCIGSGVILESW 384
FY G C+G +I +++
Sbjct: 348 IVFYDGEECLGGAIIDKAY 366
>gi|116494783|ref|YP_806517.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus casei ATCC 334]
gi|301066347|ref|YP_003788370.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Lactobacillus casei str. Zhang]
gi|409997158|ref|YP_006751559.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei W56]
gi|417980590|ref|ZP_12621270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 12A]
gi|418001927|ref|ZP_12642055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UCD174]
gi|418005007|ref|ZP_12645007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UW1]
gi|418010751|ref|ZP_12650522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei Lc-10]
gi|122263799|sp|Q039P7.1|MNMA_LACC3 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|116104933|gb|ABJ70075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei ATCC 334]
gi|300438754|gb|ADK18520.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, PP-loop ATPase [Lactobacillus casei
str. Zhang]
gi|406358170|emb|CCK22440.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei W56]
gi|410524913|gb|EKP99820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 12A]
gi|410545372|gb|EKQ19672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UCD174]
gi|410548004|gb|EKQ22224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UW1]
gi|410553330|gb|EKQ27333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei Lc-10]
Length = 377
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 196/371 (52%), Gaps = 18/371 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 11 IRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVA 67
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY
Sbjct: 68 SEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNADY 127
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHYA+V D+ +L D KDQTYFLS LSQ QLK+ +FP+G + K EV
Sbjct: 128 IAMGHYAQV---KTDENGIVHMLR-GADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPEV 183
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ F +F++ ++ G ++ + G +G H G +
Sbjct: 184 RKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEMGTHDGLMY 242
Query: 259 YTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
YTIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 243 YTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGQ 302
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P E + + K R+ + + + + +DG A V + + GQ FY G
Sbjct: 303 APAEGTHMTAKFRYRQ--RDTGVTLHYHDDG---TATVDFDVPVRAITPGQAVVFYDGDE 357
Query: 374 CIGSGVILESW 384
C+G G I ++
Sbjct: 358 CLGGGTIDAAY 368
>gi|384044804|ref|YP_005492821.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
PP-loop ATPase [Bacillus megaterium WSH-002]
gi|345442495|gb|AEN87512.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, PP-loop ATPase [Bacillus megaterium
WSH-002]
Length = 370
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 206/366 (56%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 6 KDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ ++
Sbjct: 63 VCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAMTLGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA+V + D EYK + D KDQTYFL+ L Q QL +++FP+G I K
Sbjct: 123 DYLATGHYARVAYR--DGEYK---MLRGVDGNKDQTYFLNQLGQDQLSKVMFPIGEIEKS 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VR+ A + L +KDS GICF+G+ F EF+++++ GV ++ G+ GKH G
Sbjct: 178 KVREIAKEAGLATATKKDSTGICFIGERNFKEFLSQYLPAQPGV-MQTLDGEVKGKHDGL 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+YTIGQR GL + G PW+VV KD++ NV++V + +++ ++ W+S
Sbjct: 237 MYYTIGQRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHNELLYSTSLTATNISWVS--D 294
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
+ S + C + + + +E V+D + I V+ +E + + GQ FY+ C
Sbjct: 295 RDWSSPMTCTAKFRYRQTDSAVTVEKVDD--DTIKVI-FAEPVRAITPGQAVVFYKDDEC 351
Query: 375 IGSGVI 380
+G I
Sbjct: 352 LGGATI 357
>gi|228902924|ref|ZP_04067065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis IBL 4222]
gi|228967471|ref|ZP_04128500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228792248|gb|EEM39821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228856708|gb|EEN01227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis IBL 4222]
Length = 376
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 205/374 (54%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E + K R+ N + + D EN + E + + GQ FY
Sbjct: 298 SNKVKETEFKCTAKFRYRQ---EDNKVTVQIVD--ENTVRILCDEPIRAITPGQAVVFYD 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|119476176|ref|ZP_01616528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[marine gamma proteobacterium HTCC2143]
gi|119450803|gb|EAW32037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[marine gamma proteobacterium HTCC2143]
Length = 372
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 209/376 (55%), Gaps = 29/376 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C ++D+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSALLLQQQGYQVEGLFMKNWDEDDGSEY---CTAKDDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ + L + EYW NV + + EY+ GRTPNPDVLCN IKF AF+D + DY+
Sbjct: 70 QLKITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDVLCNREIKFKAFLDYALVLGADYI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + H D+ + L +D KDQ+YFL +S ++ + +FP+G + K +VR
Sbjct: 130 ATGHYVR-KHQMGDR----AQLIKGRDNNKDQSYFLHAVSGTEIAKTLFPVGDLEKPDVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A ++ L ++KDS GICF+G+ +F +F+ +++ G+I E G +G H G ++
Sbjct: 185 AIAEKYSLTTHNKKDSTGICFIGERRFKDFLQQYLPAQPGMI-EDTDGSIMGGHSGLMYH 243
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR----VGSLKW 309
TIGQRQGL + G PWYVV+KD+K NV+ +++ + RLF+ V + W
Sbjct: 244 TIGQRQGLGIGGVSGAGDAPWYVVDKDLKRNVLIIAQG----SQHHRLFKQGLFVSEIHW 299
Query: 310 LSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
++ R + K+R+ NC I + G E V L + + + GQ FY
Sbjct: 300 INNDGITLPHRCKAKIRYRQVDQNCE--IRKLSVGYE--IVFDLPQ--RAITPGQSVVFY 353
Query: 370 QGTRCIGSGVILESWD 385
C+G GVI +++
Sbjct: 354 DNEICLGGGVIEAAFN 369
>gi|260779096|ref|ZP_05887988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio coralliilyticus ATCC BAA-450]
gi|260605260|gb|EEX31555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio coralliilyticus ATCC BAA-450]
Length = 373
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 207/372 (55%), Gaps = 25/372 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + D KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 129 IAMGHYVR--RTFPDNGEKPQMLR-GLDGNKDQSYFLYTLSSDQIARSLFPVGELEKPEV 185
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 186 RRIAEEQDLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 244
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PWYV +KD+K NV+ + K + L W+
Sbjct: 245 HTLGQRKGLHIGGQKGGGGNEDPWYVADKDLKRNVLIAVQGAEHPLLKSQGLIASQLHWV 304
Query: 311 SGLPPEEISR--LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
EI + LQC V+ + I ++D ENI V+ + + GQ A F
Sbjct: 305 D----REIIKAPLQCSVKTRYRQTDIPCTIIPIDD--ENIKVI-FDDPQVAVTPGQSAVF 357
Query: 369 YQGTRCIGSGVI 380
Y+ C+G G+I
Sbjct: 358 YKDDVCLGGGII 369
>gi|229135219|ref|ZP_04264018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST196]
gi|228648261|gb|EEL04297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST196]
Length = 376
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 201/367 (54%), Gaps = 16/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W D C ED VC+
Sbjct: 14 RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDANGV---CTATEDYNDVIEVCN 70
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++ ++ DYV
Sbjct: 71 QIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAIALGADYV 130
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG + K ++R
Sbjct: 131 ATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIR 185
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ AT+ L +KDS GICF+G+ F F++ ++ GV ++ +G+ GKH G +Y
Sbjct: 186 EMATEAGLATAAKKDSTGICFIGERNFKGFLSNYLPAQPGV-MQTLSGEVKGKHDGLMYY 244
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ V K++K N+++V + +++ ++ W+S E+
Sbjct: 245 TIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEK 304
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
K R+ + + ++ V+ EN + E + + GQ FY G C+G
Sbjct: 305 EFTCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGG 359
Query: 378 GVILESW 384
I E +
Sbjct: 360 ATIDEVY 366
>gi|378978177|ref|YP_005226318.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|386034325|ref|YP_005954238.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae KCTC
2242]
gi|402781336|ref|YP_006636882.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|419971730|ref|ZP_14487160.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419980915|ref|ZP_14496196.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419986023|ref|ZP_14501159.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419989739|ref|ZP_14504714.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419994841|ref|ZP_14509649.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004057|ref|ZP_14518698.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009665|ref|ZP_14524146.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420014638|ref|ZP_14528943.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420026750|ref|ZP_14540750.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031533|ref|ZP_14545354.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420038313|ref|ZP_14551961.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044353|ref|ZP_14557834.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420050143|ref|ZP_14563445.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055666|ref|ZP_14568831.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061317|ref|ZP_14574307.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420066077|ref|ZP_14578879.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420070826|ref|ZP_14583476.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078924|ref|ZP_14591376.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420083069|ref|ZP_14595357.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421908486|ref|ZP_16338327.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421916794|ref|ZP_16346360.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424830121|ref|ZP_18254849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|428933741|ref|ZP_19007285.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae JHCK1]
gi|428939567|ref|ZP_19012673.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae VA360]
gi|449059315|ref|ZP_21737012.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae hvKP1]
gi|205822469|sp|A6T7K3.2|MNMA_KLEP7 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|339761453|gb|AEJ97673.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae KCTC
2242]
gi|364517588|gb|AEW60716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|397344624|gb|EJJ37756.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397349390|gb|EJJ42484.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397352668|gb|EJJ45746.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397367504|gb|EJJ60115.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397368614|gb|EJJ61219.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397369238|gb|EJJ61840.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397377654|gb|EJJ69880.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397380623|gb|EJJ72802.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397394782|gb|EJJ86503.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400402|gb|EJJ92047.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397404466|gb|EJJ95974.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397411738|gb|EJK02987.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397412120|gb|EJK03360.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421519|gb|EJK12531.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397430347|gb|EJK21042.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397431186|gb|EJK21866.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397441330|gb|EJK31710.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444230|gb|EJK34513.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397451589|gb|EJK41671.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402542226|gb|AFQ66375.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|410117621|emb|CCM80952.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410120904|emb|CCM88985.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414707546|emb|CCN29250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|426303764|gb|EKV65925.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae VA360]
gi|426304529|gb|EKV66671.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae JHCK1]
gi|448874891|gb|EMB09921.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae hvKP1]
Length = 368
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G IL + G+ +G H G +
Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKILTVD-GEEIGTHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ P + R K R+ C + E+ V+ E + GQ A F
Sbjct: 294 WVNREPLQGTLRCTVKTRYRQTDIPCTVTALD-----EDRIEVRFDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YLGEVCLGGGII 360
>gi|423113834|ref|ZP_17101525.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella oxytoca 10-5245]
gi|376387479|gb|EHT00189.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella oxytoca 10-5245]
Length = 383
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 209/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEELDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIISVD-GDEVGEHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 253 HTLGQRKGLGIGGIKDGGEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ +C ++ ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPLTGTLRCTVKTRYRQTDISCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YDGEVCLGGGII 375
>gi|158319927|ref|YP_001512434.1| tRNA-specific 2-thiouridylase MnmA [Alkaliphilus oremlandii OhILAs]
gi|205811148|sp|A8MEV9.1|MNMA_ALKOO RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|158140126|gb|ABW18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alkaliphilus oremlandii OhILAs]
Length = 364
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 204/368 (55%), Gaps = 18/368 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K KV + +SGGVDSSVA LL G+ ++K W + D + C ED + +
Sbjct: 6 KDTKVVIGMSGGVDSSVAALLLKQQGYDVVGIFMKNWDESDELGY---CTSAEDYEDVRR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VCDQ+ +P V+ EYW V +Y + EY+ GRTPNPDV+CN IKF AF+D +
Sbjct: 63 VCDQIGIPYYSVNFEKEYWDRVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLDHAIKLGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA+V +S D EY+ L D KDQTYFL+ L+Q QL + +FP+G + K+
Sbjct: 123 DYLATGHYAQVDYS--DGEYR---LLRGVDTNKDQTYFLNQLNQYQLSKAMFPVGHLQKK 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
++R+ A L +KDS GICF+G+ F EF++ ++ G I+ + G+ GKH G
Sbjct: 178 DLRQIALDAGLATASKKDSTGICFIGERNFKEFLSNYLPAKPGKIISLD-GEVKGKHDGL 236
Query: 257 WFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+YT+GQR+GL + G PW+VV+KD++ N+++V++ R L+W+S
Sbjct: 237 MYYTLGQRKGLGIGGAGTGEPWFVVDKDLEKNILYVTQGETHPSLYSRGLIGADLQWVSE 296
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P + + K R+ + +VE+G N V E + + GQ FY G
Sbjct: 297 NPKPSVIKCTAKFRYRQPDQGVTV---YVEEG--NTCRVMFDEPQKAITPGQAVVFYDGV 351
Query: 373 RCIGSGVI 380
C+G I
Sbjct: 352 VCLGGATI 359
>gi|89100972|ref|ZP_01173817.1| TrmU [Bacillus sp. NRRL B-14911]
gi|89084308|gb|EAR63464.1| TrmU [Bacillus sp. NRRL B-14911]
Length = 370
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/373 (35%), Positives = 204/373 (54%), Gaps = 17/373 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 6 KDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVIR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+
Sbjct: 63 VCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAMSLGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA+V H + + D+ KDQTYFL+ L++ QL +++FP+G I K
Sbjct: 123 DYLATGHYARVEHGENGVKMLRGL-----DENKDQTYFLNQLTEEQLSKVMFPIGSIEKS 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A + L +KDS GICF+G+ F EF+ ++ G +E G+ +G+H G
Sbjct: 178 EVREIAKKAGLATAAKKDSTGICFIGERNFKEFLGNYLPAQPGS-METMEGETVGRHDGL 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+YTIGQR GL + G PW+V+ KD+K NV++V + + + + W+S P
Sbjct: 237 MYYTIGQRHGLGIGGAGDPWFVIGKDLKRNVLYVGQGFDNEKLYSDSIIADKVSWVSKAP 296
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
E +C + + ++ + +E+G A + + + GQ FY G C
Sbjct: 297 GE---TFECTAKFRYRQPDNSVTVTLLENGQ---AKITFHSPIRAVTPGQAVVFYDGEVC 350
Query: 375 IGSGVILESWDDQ 387
+G G I ++++
Sbjct: 351 LGGGTIDRVFNNE 363
>gi|288936092|ref|YP_003440151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella variicola At-22]
gi|290510856|ref|ZP_06550226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella sp. 1_1_55]
gi|288890801|gb|ADC59119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella variicola At-22]
gi|289777572|gb|EFD85570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella sp. 1_1_55]
Length = 388
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 27 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 83
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 84 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 143
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 144 IATGHYVR----RADVDGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 198
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G IL + G+ +G H G +
Sbjct: 199 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKILTVD-GEEIGTHQGLMY 257
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 258 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 313
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + R K R+ C + E+ V+ E + GQ A F
Sbjct: 314 WVDREPLQGTLRCTVKTRYRQTDIPCTVTALD-----EDRIEVRFDEPVAAVTPGQSAVF 368
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 369 YLGEVCLGGGII 380
>gi|401763250|ref|YP_006578257.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400174784|gb|AFP69633.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 370
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 180 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIVTVD-GDEIGQHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILVVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + R K R+ C + ++D + V+ E + GQ A F
Sbjct: 295 WVDREPLKGTLRCTVKTRYRQTDIPCT--VTALDD---DRIDVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YSGEICLGGGII 361
>gi|347534658|ref|YP_004841328.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sanfranciscensis
TMW 1.1304]
gi|345504714|gb|AEN99396.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sanfranciscensis
TMW 1.1304]
Length = 382
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/381 (35%), Positives = 204/381 (53%), Gaps = 19/381 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSVA LL G+ ++K W D C ED K
Sbjct: 9 MKDNSKTRVVVGMSGGVDSSVAAYLLKKQGYDVIGVFMKNWDDTDDNGV---CTATEDFK 65
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V +Q+ +P V+ EY+ V +Y ++EYR GRTPNPDVLCNT +K+ AF+D
Sbjct: 66 DVAHVANQIGIPYYSVNFEKEYYDRVFTYFLDEYRRGRTPNPDVLCNTEVKYKAFLDYAM 125
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A GHYA++ D+ K +L S D KDQTYFLS LS QL R++FP+G
Sbjct: 126 DLGADYIAMGHYAQL---KRDENGKNHLLR-STDLNKDQTYFLSQLSAEQLDRVMFPIGG 181
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A + +L D+KDS G+CF+G F++F++ +I G ++ G+ G+
Sbjct: 182 MTKPEVREIAHEANLYVADKKDSMGVCFIGPNNFNQFLSNYIPAKSGKMMTM-NGEVKGE 240
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + G PW+V+ KD+ N+++V + Y + +
Sbjct: 241 HVGLMYYTIGQRKGLGIGGDGQDNRPWFVIGKDLSKNILYVGKGYENPYLYADYLTASDV 300
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIE-HVEDGGENIAVVQLSEDDQGLAAGQFA 366
W+ G R K R + ++ + H+ D G+ + V+ + + + GQ
Sbjct: 301 SWVDGNDRGNDFRCTAKFR----YRQTDVPVTVHLSDDGKQVK-VEFDDPARAVTPGQAV 355
Query: 367 AFYQGTRCIGSGVILESWDDQ 387
FY G C+G I ++ DQ
Sbjct: 356 VFYDGDECLGYATIDAAFKDQ 376
>gi|88703376|ref|ZP_01101092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Congregibacter litoralis KT71]
gi|88702090|gb|EAQ99193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Congregibacter litoralis KT71]
Length = 372
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/375 (36%), Positives = 201/375 (53%), Gaps = 21/375 (5%)
Query: 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDM 71
+ P + KV V +SGGVDSSVA +L G+ ++K W ++D + C + D
Sbjct: 2 TAPAKNTEKVIVGMSGGVDSSVAALILLEQGYDVEGLFMKNWDEDDGTEY---CTAKVDY 58
Query: 72 KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI 131
A+AV D++ + L + EYW NV + ++EYR GRTPNPD+LCN IKF AF+D
Sbjct: 59 ADAQAVADKLGITLHAANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFRAFLDYA 118
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ D +A+GHYA+ + +P++ + D KDQ+YFL + A+L + +FPLG
Sbjct: 119 LELGADRIATGHYAR----RGMRHGRPALCK-GLDNNKDQSYFLHAVGHAELSKTLFPLG 173
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K EVR A + L D+KDS GICF+G+ +F +F+ +++ G+I E GD +G
Sbjct: 174 EIEKPEVRALAERAGLRTHDKKDSTGICFIGERRFKDFLQQYLPAQPGIIKTLE-GDTIG 232
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++TIGQRQGL + G PWYV KD+ NNV+ V + +
Sbjct: 233 EHSGLMYHTIGQRQGLGIGGLARHNEAPWYVAGKDLANNVLLVVQGNDHPALFSQELWTD 292
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+L W++G P+ KVR+ C + EDGG + S + + GQ
Sbjct: 293 TLFWIAGQAPQFPLHCAAKVRYRQADQKCTVF----EDGGR--YRINFSAPQRAITPGQS 346
Query: 366 AAFYQGTRCIGSGVI 380
Y G C+G GVI
Sbjct: 347 VVLYDGNICLGGGVI 361
>gi|354723080|ref|ZP_09037295.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter mori LMG 25706]
Length = 370
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G I+ + G+ +G+H G +
Sbjct: 180 RKIAEELDLITARKKDSTGICFIGERKFRDFLGRYLPAQPGKIVTVD-GEEIGQHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + R K R+ C I ++D + V+ E + GQ A F
Sbjct: 295 WVDREPLKGTLRCTVKTRYRQTDIPCT--ITALDD---DRIDVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YSGEICLGGGII 361
>gi|116492933|ref|YP_804668.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
PP-loop ATPase [Pediococcus pentosaceus ATCC 25745]
gi|421894298|ref|ZP_16324788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus pentosaceus IE-3]
gi|122265603|sp|Q03EZ6.1|MNMA_PEDPA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|116103083|gb|ABJ68226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus pentosaceus ATCC 25745]
gi|385272842|emb|CCG90160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus pentosaceus IE-3]
Length = 377
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/380 (35%), Positives = 201/380 (52%), Gaps = 15/380 (3%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN + C ED K
Sbjct: 1 MTDNSKTRVVVGMSGGVDSSVVAYLLKQQGYDVVGVFMKNWDDTD-ENGY--CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V ++ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAKVAAKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAI 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ DYVA+GHYA+V ++ L + D KDQTYFLS LS QL R++FPLG
Sbjct: 118 SLGADYVATGHYAQVERDENGHQH----LLRATDSNKDQTYFLSQLSAEQLDRVMFPLGG 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + L D+KDS GICF+G+ F EF+ ++ G ++ + G+ G+
Sbjct: 174 MIKPEVRKVAEEAGLSVYDKKDSVGICFIGEKNFREFLGNYLPAKAGKMMTLD-GEVKGE 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + GG PW+VV KD+ N+++V + + + +
Sbjct: 233 HAGLMYYTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVGQGFENSHLYAASLDASDM 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+++ L E +C + + + + ED + V + + + GQ
Sbjct: 293 HFVNKLGEERGRDFRCTAKFRYRAQDVPVTVHFSEDFSK--VTVDFDDPARAITPGQALV 350
Query: 368 FYQGTRCIGSGVILESWDDQ 387
Y G CIG G+I +++ +
Sbjct: 351 LYDGEECIGGGIIDAAYNSE 370
>gi|423128648|ref|ZP_17116327.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella oxytoca 10-5250]
gi|376393130|gb|EHT05791.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella oxytoca 10-5250]
Length = 368
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 209/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEALDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIISVD-GDEVGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 238 HTLGQRKGLGIGGIKDGGEDPWYVVDKDVENNILVVAQGH----DHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C+ ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPVTGTLRCTVKTRYRQTDIPCS--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YSGEVCLGGGII 360
>gi|407699919|ref|YP_006824706.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas macleodii str.
'Black Sea 11']
gi|407249066|gb|AFT78251.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas macleodii str.
'Black Sea 11']
Length = 369
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 202/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K A+AV D
Sbjct: 11 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVAD 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A + DY
Sbjct: 68 KLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGADY 127
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D +++ + D KDQ+YFL L + + + +FP+G I K V
Sbjct: 128 IATGHYVR--RREVDGKWQ---MLRGLDNNKDQSYFLYTLGEEHVAKTLFPVGDIEKPLV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + L D+KDS GICF+G+ KF +F+AR++ GVI AE G+ +G+H G +
Sbjct: 183 RKIAEEQGLITHDKKDSTGICFIGERKFKDFLARYLPAQPGVIETAE-GEEIGQHEGLMY 241
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NV+ V + RL+ G L
Sbjct: 242 HTLGQRKGLHIGGLAKYGDDPWYVVDKDVARNVLIVGQGA----DHPRLYSKGLVAKQLH 297
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ E R K R+ C + ++ V E + + GQ A F
Sbjct: 298 WVDRKTITEPVRAVVKTRYRQADIPCTITPTQ-----DDTIEVMFDEPQKAVTPGQSAVF 352
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 353 YSDEVCLGGGII 364
>gi|294501356|ref|YP_003565056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus megaterium QM B1551]
gi|294351293|gb|ADE71622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus megaterium QM B1551]
Length = 370
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 206/366 (56%), Gaps = 16/366 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 6 KDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ ++
Sbjct: 63 VCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAMTLGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA+V + D EYK + D KDQTYFL+ L Q QL +++FP+G I K
Sbjct: 123 DYLATGHYARVAYR--DGEYK---MLRGVDGNKDQTYFLNQLGQDQLSKVMFPIGEIEKS 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VR+ A + L +KDS GICF+G+ F EF+++++ GV ++ G+ GKH G
Sbjct: 178 KVREIAKEAGLATATKKDSTGICFIGERNFKEFLSQYLPAQPGV-MQTLDGEVKGKHDGL 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+YTIGQR GL + G PW+VV KD++ NV++V + +++ ++ W+S
Sbjct: 237 MYYTIGQRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHNELLYSTSLTATNVSWVS--E 294
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
+ S + C + + + +E V+D + I V+ +E + + GQ FY+ C
Sbjct: 295 RDWSSPMTCTAKFRYRQTDSAVTVEKVDD--DTIKVI-FAEPVRAITPGQAVVFYKDDEC 351
Query: 375 IGSGVI 380
+G I
Sbjct: 352 LGGATI 357
>gi|330016186|ref|ZP_08308416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella sp. MS 92-3]
gi|328529471|gb|EGF56376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella sp. MS 92-3]
Length = 388
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 27 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 83
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 84 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 143
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 144 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 198
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G IL + G+ +G H G +
Sbjct: 199 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKILTVD-GEEIGTHQGLMY 257
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 258 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 313
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ P + R K R+ C + E+ V+ E + GQ A F
Sbjct: 314 WVNREPLQGTLRCTVKTRYRQTDIPCTVTALD-----EDRIEVRFDEPVAAVTPGQSAVF 368
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 369 YLGEVCLGGGII 380
>gi|206576946|ref|YP_002239233.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae 342]
gi|229486343|sp|B5XSN3.1|MNMA_KLEP3 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|206566004|gb|ACI07780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella pneumoniae 342]
Length = 368
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G IL + G+ +G H G +
Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKILTVD-GEEIGTHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + R K R+ C + E+ V+ E + GQ A F
Sbjct: 294 WVDREPLQGTLRCTVKTRYRQTDIPCTVTALD-----EDRIEVRFDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YLGEVCLGGGII 360
>gi|419762766|ref|ZP_14289012.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397744261|gb|EJK91473.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 388
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 27 KVIVGMSGGVDSSVSAYLLLLQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 83
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 84 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 143
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 144 IATGHYVR----RADVDGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 198
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF +F+ R++ G IL + G+ +G H G +
Sbjct: 199 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKILTVD-GEEIGTHQGLMY 257
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 258 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 313
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ P + R K R+ C + E+ V+ E + GQ A F
Sbjct: 314 WVNREPLQGTLRCTVKTRYRQTDIPCTVTALD-----EDRIEVRFDEPVAAVTPGQSAVF 368
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 369 YLGEVCLGGGII 380
>gi|320547685|ref|ZP_08041970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus equinus ATCC 9812]
gi|320447760|gb|EFW88518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus equinus ATCC 9812]
Length = 373
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 201/380 (52%), Gaps = 20/380 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 1 MTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNW--DDTDEFGV-CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQV +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAAVADQVGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V S D++ +L D KDQTYFLS LSQ QL++++FPLG
Sbjct: 118 TLGADYVATGHYAQV---SRDEDGTVHMLR-GADNNKDQTYFLSQLSQEQLQKVMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + L +KDS GICF+G+ F +F+++++ +G ++ + D +G+
Sbjct: 174 LEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTVDGRD-MGE 232
Query: 253 HWGFWFYTI------GQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTI G PW+VV KD+ N+++V + +Y S
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASS 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E + K R+ + ++ G+ VV +E + + GQ
Sbjct: 293 VHFTRDMPEEFTMEVTAKFRYRQPDSKVTVHVK-----GDKAEVV-FAEPQRAITPGQAV 346
Query: 367 AFYQGTRCIGSGVILESWDD 386
FY G C+G G+I ++ D
Sbjct: 347 VFYDGEECLGGGIIDMAYKD 366
>gi|59712391|ref|YP_205167.1| tRNA-specific 2-thiouridylase MnmA [Vibrio fischeri ES114]
gi|71658019|sp|Q5E3W7.1|MNMA_VIBF1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|59480492|gb|AAW86279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio fischeri ES114]
Length = 374
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 206/375 (54%), Gaps = 22/375 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD+LCN IKF AF++ A ++ D+
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADF 124
Query: 139 VASGHYAKVVHSSADQ---EYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A GHY + +A++ KP +L D KDQ+YFL LS Q+ R +FP+G + K
Sbjct: 125 IAMGHYVRRTFPTAEEIANGIKPQMLR-GLDSNKDQSYFLYTLSSEQVARSLFPVGELEK 183
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + L +KDS GICF+G+ KF+EF+ +++ G I E G +G+H G
Sbjct: 184 PEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGNI-ETPEGKVIGQHQG 242
Query: 256 FWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
++T+GQR+GL + G PW+V EKD+K NV+ + K + L
Sbjct: 243 LMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSQGLLASQL 302
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+ P + K R+ C ++ V+D ENI V+ E + GQ A
Sbjct: 303 HWVDRTPIKAPLSCTVKTRYRQTDIPCTII--PVDD--ENIKVI-FDEPQIAVTPGQSAV 357
Query: 368 FYQGTRCIGSGVILE 382
FY C+G G+I E
Sbjct: 358 FYLDEVCLGGGIIEE 372
>gi|37526694|ref|NP_930038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photorhabdus luminescens subsp. laumondii TTO1]
gi|81571961|sp|Q7MB22.1|MNMA_PHOLL RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|36786126|emb|CAE15178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 367
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/372 (37%), Positives = 203/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A++VCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQSVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EYR GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLNADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RRDINGKSQLLR-GLDNNKDQSYFLYTLSHQQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF +F+ R++ G I+ + G+ LG+H G +
Sbjct: 180 RRIAEKIGLVTAKKKDSTGICFIGERKFRDFLGRYLPAKPGPIMTVD-GESLGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYV++KDV+NN++ V++ + + RL G L
Sbjct: 239 HTLGQRKGLGIGGTKEGSEEPWYVIDKDVQNNILIVAQGH----EHPRLMSTGLIAQQLY 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ E K R+ C+ V E+ V + + GQ A F
Sbjct: 295 WVDRQTLTEKIHCVVKTRYRQQDIPCS-----VTPISEDKIEVHFANPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQG C+G GVI
Sbjct: 350 YQGEVCLGGGVI 361
>gi|299822830|ref|ZP_07054716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria grayi DSM 20601]
gi|299816359|gb|EFI83597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria grayi DSM 20601]
Length = 370
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 199/374 (53%), Gaps = 24/374 (6%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV LL G+ ++K W +D + F C ED +
Sbjct: 1 MKDNSNIRVVVGMSGGVDSSVTAYLLKQQGYDVVGIFMKNW--DDTDEFGV-CTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V +Q+ +P V+ +YW V +Y + EY+ GRTPNPDV+CN IKF AF++
Sbjct: 58 DVIRVANQIGIPYYAVNFEKQYWDKVFTYFLAEYKLGRTPNPDVMCNKEIKFKAFLEHAE 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ DYVA+GHYA+ D E + L D KDQTYFL+ LSQ QL +++FPLG
Sbjct: 118 SLGADYVATGHYART--EIVDGEVQ---LLRGVDNNKDQTYFLNQLSQEQLSKVMFPLGG 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETGD 248
+ K EVR A + L ++KDS GICF+G+ F +F++ ++ GEM + TG
Sbjct: 173 MEKSEVRDIAQKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTL-----TGK 227
Query: 249 FLGKHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
+GKH G +YTIGQR GL + G PW+V KD++NNV+FV + ++ +
Sbjct: 228 RMGKHDGLMYYTIGQRHGLGIGGDGEPWFVAGKDLENNVLFVEQGFHHDSLYSDMLIATD 287
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + S P E + K R+ + + + E+G A V E + + GQ
Sbjct: 288 VSFTSNRPKEMVFHCTAKFRYRQ--VDSGVTVYLTENG---TAKVVFDEPVRAITPGQAV 342
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G I
Sbjct: 343 VFYDGDICLGGATI 356
>gi|197336343|ref|YP_002156606.1| tRNA-specific 2-thiouridylase MnmA [Vibrio fischeri MJ11]
gi|423686558|ref|ZP_17661366.1| tRNA-specific 2-thiouridylase MnmA [Vibrio fischeri SR5]
gi|229487426|sp|B5FG83.1|MNMA_VIBFM RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|197317833|gb|ACH67280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio fischeri MJ11]
gi|371494626|gb|EHN70224.1| tRNA-specific 2-thiouridylase MnmA [Vibrio fischeri SR5]
Length = 374
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 206/375 (54%), Gaps = 22/375 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD+LCN IKF AF++ A ++ D+
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADF 124
Query: 139 VASGHYAKVVHSSADQ---EYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A GHY + +A++ KP +L D KDQ+YFL LS Q+ R +FP+G + K
Sbjct: 125 IAMGHYVRRTFPTAEEIANGVKPQMLR-GLDSNKDQSYFLYTLSSEQVARSLFPVGELEK 183
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + L +KDS GICF+G+ KF+EF+ +++ G I E G +G+H G
Sbjct: 184 PEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGNI-ETPEGKVIGQHQG 242
Query: 256 FWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
++T+GQR+GL + G PW+V EKD+K NV+ + K + L
Sbjct: 243 LMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSQGLLASQL 302
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+ P + K R+ C ++ V+D ENI V+ E + GQ A
Sbjct: 303 HWVDRTPIKAPLSCTVKTRYRQTDIPCTII--PVDD--ENIKVI-FDEPQIAVTPGQSAV 357
Query: 368 FYQGTRCIGSGVILE 382
FY C+G G+I E
Sbjct: 358 FYLDEVCLGGGIIEE 372
>gi|152981022|ref|YP_001352063.1| tRNA-specific 2-thiouridylase MnmA [Janthinobacterium sp.
Marseille]
gi|205816857|sp|A6SUW6.1|MNMA_JANMA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|151281099|gb|ABR89509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Janthinobacterium sp. Marseille]
Length = 372
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 197/372 (52%), Gaps = 22/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSV+ LL G+ ++K W +D + C +D A +V D
Sbjct: 5 RVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDAASVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
V V +E V+ EY V + + EY+ GRTPNPDVLCN IKF AF+D + D +
Sbjct: 62 VVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMLLGADMI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V ++ + L + D KDQ+YFL L+QAQL + +FPLG I K EVR
Sbjct: 122 ATGHYARVREVTSGPDAGRVELLKAVDASKDQSYFLHRLNQAQLAKTLFPLGEIRKTEVR 181
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A Q LPN +KDS GICF+G+ F EF+ R++ G + E G +G+H G FY
Sbjct: 182 KIAEQLKLPNATKKDSTGICFIGERPFREFLNRYLSYQPGPMKTPE-GVIVGEHVGLSFY 240
Query: 260 TIGQRQGLRLPG-----------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLK 308
T+GQR+G+ L G PWYV KDV N +++ + + G +
Sbjct: 241 TLGQRKGIGLGGMKSHKNTDGNSEPWYVARKDVATNTLYIVQGHDHPWLLSSELSAGQMS 300
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++G PP E + K R+ C+ + + G ++A + + GQ A
Sbjct: 301 WVAGSPPSE-ELVSAKTRYRQADVACS---QRSDADGFSLA---FAAPQWAVTPGQSAVL 353
Query: 369 YQGTRCIGSGVI 380
YQG C+G G+I
Sbjct: 354 YQGDVCLGGGII 365
>gi|389722487|ref|ZP_10189122.1| tRNA-specific 2-thiouridylase MnmA [Rhodanobacter sp. 115]
gi|388441755|gb|EIL98003.1| tRNA-specific 2-thiouridylase MnmA [Rhodanobacter sp. 115]
Length = 374
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 198/371 (53%), Gaps = 21/371 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+KV + +SGGVDSSVA LL AGH +++ W ++D C + D K A AVC
Sbjct: 1 MKVMLGISGGVDSSVAALLLQQAGHEVEGLFMQNWEEDDRNG---PCTTDVDRKDAVAVC 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
++ +P + EYW +V ++ ++EYR GRTPNPDVLCN IKF F+D ++ +
Sbjct: 58 GRLGIPFHARNFASEYWDSVFTHFLDEYRAGRTPNPDVLCNREIKFKTFLDEARALGAEK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+V D + L + D KDQTYFL L Q QL +FP+G I K V
Sbjct: 118 IATGHYARV-----DCRHGEYRLLRAVDASKDQTYFLHALGQPQLAATLFPVGEIEKSRV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP +KDS GICF+G+ F F+A++I G + G +G+H G +
Sbjct: 173 RELAHEAALPTHAKKDSTGICFIGERDFRSFLAQYIPARPG-DMRTPDGLRVGEHQGVMY 231
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQR GL + G PWYVV KDV NV++V++ + + R + W++G
Sbjct: 232 YTLGQRNGLGIGGRTNAGGEPWYVVGKDVAANVLYVAQGGENHWLNSQRLRSEAPSWVAG 291
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P + R K R+ C + + DGG ++ L + + GQ FY G
Sbjct: 292 HAPADRFRCTAKTRYRQADQPCEVQL---CDGGLDVRFDTLQ---RAVTPGQSVVFYDGE 345
Query: 373 RCIGSGVILES 383
C+G VI +
Sbjct: 346 ACLGGAVIAAT 356
>gi|33151616|ref|NP_872969.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus ducreyi 35000HP]
gi|71153355|sp|Q7U342.1|MNMA_HAEDU RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|33147837|gb|AAP95358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Haemophilus ducreyi 35000HP]
Length = 384
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 204/371 (54%), Gaps = 21/371 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K KV + +SGGVDSSV+ +L G+ ++K W ++D ++ C D+ A+
Sbjct: 23 KNKKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CTAAADLADAQN 79
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSME 135
V D++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A +
Sbjct: 80 VADRLGIKLHKINFAAEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLEYAAEDLG 139
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
DY+A+GHY V SAD E + L D KDQ+YFL LS Q+ + +FP+G I K
Sbjct: 140 ADYIATGHY---VRRSADNENAQLLRGL--DANKDQSYFLYTLSNQQVAKSLFPVGEIEK 194
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
VR+ AT L +KDS GICF+G+ KF EF+AR + G I E G+ +G+H G
Sbjct: 195 PMVRQIATDLGLVTAKKKDSTGICFIGERKFKEFLARFLPAQPGDISTVE-GEIVGRHDG 253
Query: 256 FWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKW 309
+YT+GQR+GL + G P+YVVEKD+ NNV+ V++ + + L W
Sbjct: 254 LMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLVNNVLIVAQGHDNSALLSTGLIANQLHW 313
Query: 310 LSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
+ + R K R+ C ++E ++ ENI V+ E + GQ A FY
Sbjct: 314 VDRKTIGDTLRCTVKTRYRQTDIAC--LVEPID--AENIRVI-FDEPQIAVTPGQSAVFY 368
Query: 370 QGTRCIGSGVI 380
QG C+G GVI
Sbjct: 369 QGEVCLGGGVI 379
>gi|83719254|ref|YP_441804.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia thailandensis
E264]
gi|257137971|ref|ZP_05586233.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia thailandensis
E264]
gi|123537507|sp|Q2SZ45.1|MNMA_BURTA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|83653079|gb|ABC37142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia thailandensis E264]
Length = 386
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 204/392 (52%), Gaps = 21/392 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + C +D +V D
Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVIGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D S+ + +
Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V E L + D KDQ+YFL L+QAQL + +FPLG I K +VR
Sbjct: 122 ATGHYARVRERDGRFE-----LLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ F +F+ R++ G ++ G +G+H G FY
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTQPGP-MKTPDGKTVGEHIGLAFY 235
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T GQR+G+ L G PW+V KD+ +N ++V + + + R G++ W++G
Sbjct: 236 TFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAGE 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVED--GGENIAVVQLSEDDQGLAAGQFAAFYQG 371
PP + +R K R+ C + GGE ++V E + GQ A Y G
Sbjct: 296 PPSDGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLV-FDEPQWAVTPGQSAVLYDG 354
Query: 372 TRCIGSGVILESWD---DQGFPVCEKALEIAR 400
C+G G+I + D CE AL AR
Sbjct: 355 DVCLGGGIIEAAATGRPDAAPASCESALAEAR 386
>gi|317491853|ref|ZP_07950288.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920287|gb|EFV41611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 367
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 200/368 (54%), Gaps = 21/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + + V D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVRRRDIDGTTQLLRGV-----DTNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A Q DL +KDS GICF+G+ KF +F+ R++ G I+ + G+ +G+H G +
Sbjct: 180 RKIAEQLDLATAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIMTVD-GEEIGQHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVVEKD++NNV+ V++ + + L W+
Sbjct: 239 HTLGQRKGLGIGGTKDGGEDPWYVVEKDLENNVLLVAQGHDHPSLYSQGLIAQQLHWVDR 298
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
E R K R+ C + ++D E I V+ E + GQ A FY
Sbjct: 299 KTVTEPFRCVVKTRYRQPDIACT--VTPIDD--ERIE-VRFDEPVAAVTPGQSAVFYIDE 353
Query: 373 RCIGSGVI 380
C+G GVI
Sbjct: 354 VCLGGGVI 361
>gi|169829330|ref|YP_001699488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lysinibacillus sphaericus C3-41]
gi|205816875|sp|B1HUL3.1|MNMA_LYSSC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|168993818|gb|ACA41358.1| Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lysinibacillus sphaericus C3-41]
Length = 374
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 200/373 (53%), Gaps = 25/373 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSVA LL G+ ++K W D EN C ED VC
Sbjct: 10 IRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDDTD-EN--GVCTATEDYDDVIKVC 66
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ +YW V +Y +EEY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 67 NQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMSLGADY 126
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+ + S D E K + D KDQTYFL+ LSQ QL ++FP+G I K+EV
Sbjct: 127 LATGHYAR-IDRSGDGEVK---MLRGVDNNKDQTYFLNQLSQEQLAHVMFPIGDIEKKEV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + L +KDS GICF+G+ F EF+++ + G +E G +GKH G +
Sbjct: 183 RKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQFLPAQPGN-METMDGVVMGKHDGLMY 241
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLS 311
YT+GQR GL + G PW+V+ KD++ NV+ V + + YS S K L
Sbjct: 242 YTLGQRHGLGIGGDGEPWFVLGKDLERNVLLVGQGFDNEHLYSTSLSAVKMNYTSTKKLP 301
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G + C + + + +E + DG +I +E + + GQ Y G
Sbjct: 302 G-------KFSCTAKFRYRQTDTPVEVELLADGRTHIT---FAEPVRAITPGQAVVLYDG 351
Query: 372 TRCIGSGVILESW 384
CIG G I E +
Sbjct: 352 EECIGGGTIDEVF 364
>gi|401676204|ref|ZP_10808190.1| MnmA Protein [Enterobacter sp. SST3]
gi|400216690|gb|EJO47590.1| MnmA Protein [Enterobacter sp. SST3]
Length = 389
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 216/389 (55%), Gaps = 31/389 (7%)
Query: 3 QIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFW 62
+++ R S S QK KV V +SGGVDSSV+ LL G+ ++K W ++D E +
Sbjct: 12 EVQCREYSMSDNSQK--KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY- 68
Query: 63 TECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRI 122
C D+ A+AVCD++ + L V+ EYW NV +EEY+ GRTPNPD+LCN I
Sbjct: 69 --CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEI 126
Query: 123 KFGAFMD-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQA 181
KF AF++ A + DY+A+GHY + AD K +L D KDQ+YFL LS
Sbjct: 127 KFKAFLEFAAEDLGADYIATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHE 181
Query: 182 QLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVI 241
Q+ + +FP+G + K +VRK A + DL +KDS GICF+G+ KF +F+ R++ G I
Sbjct: 182 QIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKI 241
Query: 242 LEAETGDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSF 295
+ + G+ +G+H G ++T+GQR+GL + G PWYVV+KDV+NN++ V++ +
Sbjct: 242 VTVD-GEEIGQHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGH--- 297
Query: 296 DKKRRLFRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVV 351
RL VG L W+ P + R K R+ C + ++D + V
Sbjct: 298 -DHPRLMSVGLIAQQLHWVDREPLKGTLRCTVKTRYRQTDIPCT--VTALDD---DRIDV 351
Query: 352 QLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
+ E + GQ A FY G C+G G+I
Sbjct: 352 RFDEPVAAVTPGQSAVFYSGEICLGGGII 380
>gi|121607299|ref|YP_995106.1| tRNA-specific 2-thiouridylase MnmA [Verminephrobacter eiseniae
EF01-2]
gi|166991125|sp|A1WEN1.1|MNMA_VEREI RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|121551939|gb|ABM56088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Verminephrobacter eiseniae EF01-2]
Length = 370
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 190/374 (50%), Gaps = 26/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V LSGGVDS+V LL GH ++K W +D + CP D A AV D
Sbjct: 8 RVVVGLSGGVDSAVTAYLLRQQGHEVVGIFMKNWEDDDDGGY---CPSGTDFVDAAAVAD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ +Y + V + + EY+ GRTPNPDVLCN IKF AF+D + + +
Sbjct: 65 VIGIEIEHVNFAADYKERVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHALRLGAEKI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA V + A ++ L D KDQ+YFL L Q QL R +FPLG + K EVR
Sbjct: 125 ATGHYAGVRRNPASGRFE---LLKGADPAKDQSYFLHRLDQRQLSRTLFPLGALRKTEVR 181
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A LPN +KDS GICF+G+ F EF+ R+IG G I E + G LG+H G FY
Sbjct: 182 RLAEDIGLPNARKKDSTGICFIGERPFREFLNRYIGPAPGPI-EDDRGRVLGQHSGLSFY 240
Query: 260 TIGQRQGLRLPG-------------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
T+GQRQGL + G PW+V K++ N + V + + R
Sbjct: 241 TLGQRQGLGIGGLKEQGAQRGGGAHAPWFVARKELATNTLRVVQGHDHPWLLSRALEAQD 300
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+W+ G P R K R+ +C + G+ + SE+ + GQ A
Sbjct: 301 ARWICGAAPAP-GRYAAKTRYRQQDASCTMA-----SAGQAGFRLHFSEEQWAVTPGQSA 354
Query: 367 AFYQGTRCIGSGVI 380
Y G C+G GVI
Sbjct: 355 VLYDGNVCLGGGVI 368
>gi|312875501|ref|ZP_07735504.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2053A-b]
gi|325912819|ref|ZP_08175197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners UPII 60-B]
gi|311089012|gb|EFQ47453.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2053A-b]
gi|325477812|gb|EGC80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners UPII 60-B]
Length = 375
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 200/377 (53%), Gaps = 16/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D C ED +
Sbjct: 1 MTDNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGV---CTATEDFE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW V Y + EY+ GRTPNPD++CN IKF +F+D
Sbjct: 58 DVKRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK V D+ ++ KD KDQTYFLS ++Q QLK+ IFPL
Sbjct: 118 KLDADYIAMGHYAKTV---TDENGVVHMMR-PKDGNKDQTYFLSQVTQEQLKKAIFPLAD 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+SK +VR A Q L +KDS GICF+G+ F F++ + M G I+ ++ G +GK
Sbjct: 174 LSKPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTSD-GRIVGK 232
Query: 253 HWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR GL L G PW+VV K+++ N + V + Y S +
Sbjct: 233 HSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEV 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +GLP + + + C + + + + + +D N V+ E + + GQ
Sbjct: 293 SFFTGLPSNDTT-IHCTAKFRYRQPDVAVTVNYNKD--NNTVHVEFDELARAVTPGQAIV 349
Query: 368 FYQGTRCIGSGVILESW 384
FY G C+G +I +++
Sbjct: 350 FYDGEECLGGAIIDKAY 366
>gi|229163345|ref|ZP_04291297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus R309803]
gi|228620126|gb|EEK77000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus R309803]
Length = 372
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 203/367 (55%), Gaps = 16/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W D EN C ED VC+
Sbjct: 10 RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIEVCN 66
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++ ++ DYV
Sbjct: 67 QIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAIALGADYV 126
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG + K ++R
Sbjct: 127 ATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIR 181
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GKH G +Y
Sbjct: 182 EMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGKHDGLMYY 240
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ V K++K N+++V + +++ ++ W+S E
Sbjct: 241 TIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEA 300
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K R+ + + ++ V+ EN + E + + GQ FY G C+G
Sbjct: 301 EFKCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGG 355
Query: 378 GVILESW 384
I E +
Sbjct: 356 ATIDEVY 362
>gi|402815545|ref|ZP_10865137.1| tRNA-specific 2-thiouridylase MnmA [Paenibacillus alvei DSM 29]
gi|402506585|gb|EJW17108.1| tRNA-specific 2-thiouridylase MnmA [Paenibacillus alvei DSM 29]
Length = 368
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 25/369 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + F +C E D + + VC+
Sbjct: 9 RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNW--DDTDEFG-QCTAESDAEDVRRVCE 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EY+ V +Y ++EYR GRTPNPDV+CN IKFG F+ + DY+
Sbjct: 66 QIGIPYYTVNFEKEYFDKVFTYFLDEYRRGRTPNPDVMCNREIKFGEFLQKALDLGADYL 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V+H V D KDQTYFL+ L+Q QL + +FP+G + K EVR
Sbjct: 126 ATGHYARVLHEDGKHTLLRGV-----DSNKDQTYFLNALNQEQLAKAMFPIGHLPKPEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS G+CF+G+ F +F+++++ G +++ T + G+H G +Y
Sbjct: 181 RIAEEAGLATAKKKDSTGVCFIGERNFKQFLSQYLPAQPGQMIDIRTHEVKGRHDGLMYY 240
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLKWLS 311
T+GQRQGL + G PW+V EKD+ NNV++V + D L+ G + W++
Sbjct: 241 TLGQRQGLGIGGSGSGEPWFVAEKDLTNNVLYVVQG----DDHPSLYSTGLVASQVNWIA 296
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G P E R K R+ L + + V + + + GQ FY G
Sbjct: 297 GDMPNEPIRCTAKFRYRQPDQGVTL-----QKNADGTVEVTFDINQRAVTPGQAVVFYDG 351
Query: 372 TRCIGSGVI 380
C+G G I
Sbjct: 352 DTCLGGGTI 360
>gi|384134715|ref|YP_005517429.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|339288800|gb|AEJ42910.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
Length = 361
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 201/366 (54%), Gaps = 19/366 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+ V +SGGVDSSV LL AG+ ++K W + D EN C E+D + + VC+Q
Sbjct: 1 MVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDETD-EN--GACTAEQDFEDVRRVCEQ 57
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ +P V+ EY K V + +EE++ GRTPNPDVLCN IKF + + DY+A
Sbjct: 58 IGIPYYGVNFEREYEKRVFQHFLEEFKRGRTPNPDVLCNREIKFKELLACALDLGADYLA 117
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA+V +E L +DK KDQTYFL L+QA L+R +FP+G ++K EVR+
Sbjct: 118 TGHYAQVRR----EEDGSVALLRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEVRQ 173
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A L +KDS GICF+G+ F F+ +++ G+I + + G LG+H G +YT
Sbjct: 174 IARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLPAQPGLIEDVD-GRVLGEHDGLMYYT 232
Query: 261 IGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
IGQR+GLRL G PW+VV+KD+ NV+ V++ + + ++ +++ P
Sbjct: 233 IGQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSQALTADTVSFIAERP 292
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + R K R Y + VE GE+ V E + + GQ FY G C
Sbjct: 293 PAKRFRCTAKFR-----YRQDDQPVEVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGEVC 347
Query: 375 IGSGVI 380
+G G+I
Sbjct: 348 LGGGII 353
>gi|325273429|ref|ZP_08139681.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51]
gi|324101442|gb|EGB99036.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51]
Length = 374
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/376 (36%), Positives = 203/376 (53%), Gaps = 29/376 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 13 RVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTEY---CTAREDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF+D S+ D +
Sbjct: 70 RIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHY + + A V EL K D KDQ+YFL + ++ R +FP+G + K E
Sbjct: 130 ATGHYVRRRDTGA-------VTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGELEKPE 182
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR A + L +KDS GICF+G+ +FS+F+ +++ G I E G+ +G+H G
Sbjct: 183 VRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGNI-ETTEGEVIGRHHGLM 241
Query: 258 FYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWL 310
++TIGQRQGL + G PWYV+ KD+ NV+ V + N + + R L + W+
Sbjct: 242 YHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVGQGNEHPWLFSRALL-ASEIFWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+ + +L KVR+ C L + DGG E + + GQ FY
Sbjct: 301 NSVDLSSPRQLTAKVRYRQSDQRCTLAL---TDGGYRAV---FDEPQRAVTPGQSVVFYD 354
Query: 371 GTRCIGSGVI--LESW 384
G C+G GVI E W
Sbjct: 355 GEVCLGGGVIEAAEPW 370
>gi|311279962|ref|YP_003942193.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter cloacae SCF1]
gi|308749157|gb|ADO48909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter cloacae SCF1]
Length = 369
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RADVNGKSQLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + +L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 180 RKIAEELELITAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 239 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILVVAQGH----DHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + + ++ V+ E + GQ A F
Sbjct: 295 WVDREPVTGTLRCTVKTRYRQTDIPCTVTAQD-----DSRIEVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 350 YLGEVCLGGGII 361
>gi|91776467|ref|YP_546223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylobacillus flagellatus KT]
gi|123254088|sp|Q1GZF5.1|MNMA_METFK RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|91710454|gb|ABE50382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylobacillus flagellatus KT]
Length = 360
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/372 (36%), Positives = 204/372 (54%), Gaps = 24/372 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL G+ ++K W +D + + CP ++D+ A AV D
Sbjct: 4 KVIVGMSGGVDSSVAALLLKEQGYEVVGLFMKNWEDDDTDEY---CPAKQDLIDAAAVAD 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + LE V+ + EY + V + +EEY GRTPNPD+LCN+ IKF AF+D ++ D +
Sbjct: 61 KIGIELEAVNFSKEYKERVFANFLEEYSAGRTPNPDILCNSEIKFKAFLDHAMALGGDLM 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V K + +L K D KDQ+YFL L+QAQL + +FPLG + K E
Sbjct: 121 ATGHYAQV-------REKNGLFQLMKADDGTKDQSYFLYRLNQAQLSKTLFPLGHLLKRE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
+R A + LP ++KDS GICF+G+ F EF++R++ G I E G +G+H G
Sbjct: 174 IRDIARRAGLPTSEKKDSTGICFIGERPFQEFLSRYLPRAPGEIQTPE-GKVVGQHHGLM 232
Query: 258 FYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YT+GQRQGL + G PW+V KD++ NV+ V + + +L W++
Sbjct: 233 YYTMGQRQGLGIGGSKDSNGEPWFVAGKDMQRNVLIVVQGHDHPLLLNDGLIADNLHWIA 292
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G P+ K R+ C I+ ++ G A ++ + GQ Y+
Sbjct: 293 GEEPKTHWVYAAKTRYRQPDAPCE--IDRLDSG---TAEIRFGHKQWAITPGQSVVVYES 347
Query: 372 TRCIGSGVILES 383
C+G G+I +
Sbjct: 348 NVCLGGGIITSA 359
>gi|149191014|ref|ZP_01869275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio shilonii AK1]
gi|148835148|gb|EDL52124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio shilonii AK1]
Length = 369
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 206/372 (55%), Gaps = 21/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY V + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHY--VSRTFPENGEKPQMLR-GLDSNKDQSYFLYTLSHDQVARSLFPVGELEKPEV 181
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 240
Query: 259 YTIGQRQGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G PWYV EK+++ NV+ + K R L W+
Sbjct: 241 HTLGQRKGLHIGGQKGGGGNEEPWYVAEKNLERNVLIAVQGADHPLLKSNGLRASQLHWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S +E + K R+ C ++ ++D +NI V+ E + GQ A FY
Sbjct: 301 SREAIKEPMQCTVKTRYRQQDIPCTII--PIDD--DNIKVI-FDEPQVAVTPGQSAVFYS 355
Query: 371 GTRCIGSGVILE 382
C+G G+I E
Sbjct: 356 DNVCLGGGIIEE 367
>gi|167618733|ref|ZP_02387364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia thailandensis Bt4]
Length = 386
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 204/392 (52%), Gaps = 21/392 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + C +D +V D
Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVIGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D S+ + +
Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V E L + D KDQ+YFL L+QAQL + +FPLG I K +VR
Sbjct: 122 ATGHYARVRERDGRFE-----LLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ F +F+ R++ G ++ G +G+H G FY
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTQPGP-MKTPDGKTVGEHIGLAFY 235
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T GQR+G+ L G PW+V KD+ +N ++V + + + R G++ W++G
Sbjct: 236 TFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAGE 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVED--GGENIAVVQLSEDDQGLAAGQFAAFYQG 371
PP + +R K R+ C + GGE ++V E + GQ A Y G
Sbjct: 296 PPADGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLV-FDEPQWAVTPGQSAVLYDG 354
Query: 372 TRCIGSGVILESWD---DQGFPVCEKALEIAR 400
C+G G+I + D CE AL AR
Sbjct: 355 DVCLGGGIIEAAATGRPDAAPASCESALAEAR 386
>gi|410622113|ref|ZP_11332952.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola pallidula DSM 14239
= ACAM 615]
gi|410158511|dbj|GAC28326.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola pallidula DSM 14239
= ACAM 615]
Length = 389
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 209/383 (54%), Gaps = 30/383 (7%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
LS S P+ + +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C
Sbjct: 7 LSSSKPNSE-IKVIVGMSGGVDSSVSAYLLQQEGYQVEGLFMKNWEEDDNDKY---CAAA 62
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED+ A+AV D++ + L ++ EYW NV Y ++EY+ GRTPNPD++CN IKF AF+
Sbjct: 63 EDLADAQAVADKLGIYLHQINFAAEYWDNVFEYFLQEYKAGRTPNPDIMCNKEIKFKAFL 122
Query: 129 D-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI 187
+ A + DY+A+GHY V D ++K + D KDQ+YFL L + + +
Sbjct: 123 EFAAEDLGADYIATGHY--VQRQFEDGKWK---MVRGHDSNKDQSYFLYTLGHEHIAKTL 177
Query: 188 FPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETG 247
FP+G I+K VR+ A Q L ++KDS GICF+G+ KF +F+ +++ GVI E G
Sbjct: 178 FPVGAIAKPRVREIALQQGLVTHNKKDSTGICFIGERKFKDFLGQYLPASPGVI-ETTEG 236
Query: 248 DFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRL 301
+ +G H G ++T+GQR+GL + G PWYVV+K+V NV+ V + RL
Sbjct: 237 EEIGHHDGLMYHTLGQRKGLLIGGKKEHGEAPWYVVDKEVSRNVLVVGQGA----NHPRL 292
Query: 302 FRVG----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD 357
+ G L W+ P E ++ K R+ C + D N+ V+ E
Sbjct: 293 YSDGLIANQLHWVDRKGPVEAGKMMVKTRYRQADIPCTV----TPDNNGNVKVI-FDEPQ 347
Query: 358 QGLAAGQFAAFYQGTRCIGSGVI 380
+ + GQ A FY C+G G+I
Sbjct: 348 KAVTPGQSAVFYIEDTCLGGGII 370
>gi|261252577|ref|ZP_05945150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417952638|ref|ZP_12595696.1| tRNA-specific 2-thiouridylase MnmA [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260935968|gb|EEX91957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342818864|gb|EGU53715.1| tRNA-specific 2-thiouridylase MnmA [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 378
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 213/385 (55%), Gaps = 24/385 (6%)
Query: 10 SCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE 69
+C+ QK KV V +SGGVDSSV+ LL G+ ++K W ++D E + C E
Sbjct: 4 NCTDNSQK--KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAE 58
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D+ A+AVCD++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++
Sbjct: 59 DLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLE 118
Query: 130 -AISSMEFDYVASGHYAKVVHSSADQ---EYKPSVLELSKDKVKDQTYFLSHLSQAQLKR 185
A ++ DY+A GHY + +A++ KP +L D KDQ+YFL LS Q+ R
Sbjct: 119 FADEVLDADYIAMGHYVRRTFPTAEELAAGEKPKMLR-GLDGNKDQSYFLYTLSSDQVAR 177
Query: 186 LIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAE 245
+FP+G + K EVR+ A + DL +KDS GICF+G+ KF++F+ R++ G I E
Sbjct: 178 SLFPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLGRYLPAQPGNI-ETP 236
Query: 246 TGDFLGKHWGFWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDK 297
G +G+H G ++T+GQR+GL + G PW+V +KD+K NV+ +
Sbjct: 237 EGKVIGQHNGLMYHTLGQRKGLHIGGQKGGGGNEDPWFVGDKDLKRNVLIAVQGKDHPML 296
Query: 298 KRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD 357
K + L W+ +E + K R+ C ++ ++D ENI V+ E
Sbjct: 297 KSQGLIASQLHWVDRDAIKEPLQCTVKTRYRQTDIPCTII--PIDD--ENIKVI-FDEPQ 351
Query: 358 QGLAAGQFAAFYQGTRCIGSGVILE 382
+ GQ A FY+ C+G G+I E
Sbjct: 352 VAVTPGQSAVFYKDEVCLGGGIIEE 376
>gi|343496723|ref|ZP_08734814.1| tRNA-specific 2-thiouridylase MnmA [Vibrio nigripulchritudo ATCC
27043]
gi|342820861|gb|EGU55670.1| tRNA-specific 2-thiouridylase MnmA [Vibrio nigripulchritudo ATCC
27043]
Length = 370
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 206/372 (55%), Gaps = 20/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + +A+ E +P +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 125 IAMGHYVRRTFPTAEGE-QPQMLR-GLDGNKDQSYFLYTLSSDQIARSLFPVGELEKPEV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKEIGEHQGLMY 241
Query: 259 YTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+T+GQR+GL + G WYV +KD+K NV+ + K L W+
Sbjct: 242 HTLGQRKGLHIGGQKGGGGNEAAWYVADKDLKRNVLIAVQGSDHPLLKSNGLIASQLHWV 301
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
L ++ K R+ C ++ V+D E I V+ E + GQ A FY+
Sbjct: 302 DRLAIKQPMSCTVKTRYRQQDIPCTII--PVDD--ETIKVI-FDEPQVAVTPGQSAVFYK 356
Query: 371 GTRCIGSGVILE 382
C+G G+I E
Sbjct: 357 DDVCLGGGIIEE 368
>gi|149908394|ref|ZP_01897057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Moritella sp. PE36]
gi|149808557|gb|EDM68492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Moritella sp. PE36]
Length = 379
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 206/373 (55%), Gaps = 29/373 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W +D + + C ED+ A+AVCD
Sbjct: 18 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEDDDNDEY---CAAAEDLADAQAVCD 74
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS-MEFDY 138
++ + L ++ + EYW NV Y + EY+ GRTPNPD+LCN IKF AF+ S + DY
Sbjct: 75 KLGIELHAINFSAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLQFASEVLAADY 134
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY +AD +++ + D KDQ+YFL L Q+ R +FP+G + K EV
Sbjct: 135 IAMGHYVS-RRQTADGKFE---MLRGLDSNKDQSYFLYTLDHVQVSRSLFPVGELEKPEV 190
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L ++KDS GICF+G+ KF+EF+++++ G I E+ G+ +G+H G +
Sbjct: 191 RRIAEEQGLITANKKDSTGICFIGERKFTEFLSKYLPAQPGKI-ESVDGEEIGEHQGLMY 249
Query: 259 YTIGQRQGLRLPG-------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SL 307
+T+GQR+GL + G PWYVV+KD++ NV+ V++ + RLF G L
Sbjct: 250 HTLGQRKGLHIGGMKNNNNQEPWYVVDKDMERNVLLVAQGH----NHPRLFSTGLMASQL 305
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+S P + R K R+ C V GE+ V + + + GQ A
Sbjct: 306 HWISREPLTQPLRCTVKTRYRQTDVPC-----LVTPIGEDQIEVTFDKPELAVTPGQSAV 360
Query: 368 FYQGTRCIGSGVI 380
FY C+G +I
Sbjct: 361 FYLDDVCLGGAII 373
>gi|410459953|ref|ZP_11313641.1| tRNA-specific 2-thiouridylase MnmA [Bacillus azotoformans LMG 9581]
gi|409927791|gb|EKN64917.1| tRNA-specific 2-thiouridylase MnmA [Bacillus azotoformans LMG 9581]
Length = 372
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 199/363 (54%), Gaps = 16/363 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W D EN C ED VC+
Sbjct: 11 RVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDFNDVVRVCN 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+D+P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ ++ DY+
Sbjct: 68 QIDIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHALTLGADYL 127
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EYK + D KDQTYFL+ L QAQL +++FPLG + K EVR
Sbjct: 128 ATGHYAQVEYR--DGEYK---MLRGVDDNKDQTYFLNQLGQAQLSKVMFPLGHLPKSEVR 182
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A + L +KDS GICF+G+ F EF++ ++ G + + G+ G H G ++
Sbjct: 183 KIAAEAGLATATKKDSTGICFIGERNFKEFLSNYLPAQPGKMTTLD-GEVKGTHEGLMYH 241
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ + K++K NV++V + +++ + W+S P E
Sbjct: 242 TIGQRHGLGIGGSGEPWFAIGKNLKENVLYVGQGFHNDALYSDSLIAVNGSWVSDRKPTE 301
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
K R+ + + +E +E E+ V E + + GQ FY G C+G
Sbjct: 302 PFVCTAKFRYRQP--DIPVTVEIIE---EDKVRVIFGEPVRAITPGQSVVFYNGDECLGG 356
Query: 378 GVI 380
I
Sbjct: 357 ATI 359
>gi|416853831|ref|ZP_11910449.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa 138244]
gi|334844814|gb|EGM23384.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa 138244]
Length = 363
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 205/376 (54%), Gaps = 23/376 (6%)
Query: 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82
V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD++
Sbjct: 3 VGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEY---CTAREDLADAQAVCDRIG 59
Query: 83 VPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASG 142
+ L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D + D +A+G
Sbjct: 60 IKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATG 119
Query: 143 HYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFA 202
HY + D++ + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR A
Sbjct: 120 HYVR----RRDRDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRAIA 174
Query: 203 TQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIG 262
+ L +KDS GICF+G+ +F++F+ +++ G I E G +G+H G ++TIG
Sbjct: 175 EKHGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETTEGKVIGRHSGLMYHTIG 233
Query: 263 QRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
QRQGL + G PWYV+ KD++ NV+ V + R + W++ + E
Sbjct: 234 QRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELE 293
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
RL+ KVR+ +C ++E + +G + E + + GQ FY G C+G
Sbjct: 294 RPRRLRAKVRYRQSDQDC--VLEKIAEGYRAV----FDEPQRAVTPGQSVVFYDGDACLG 347
Query: 377 SGVI--LESWDDQGFP 390
GVI E+WD G P
Sbjct: 348 GGVIETAEAWDFGGRP 363
>gi|402842790|ref|ZP_10891193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella sp. OBRC7]
gi|402278176|gb|EJU27240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella sp. OBRC7]
Length = 368
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 210/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIISVD-GDEVGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 238 HTLGQRKGLGIGGIKDGGEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C+ ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPLTGTLRCTVKTRYRQTDIPCS--VKAMDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y+ C+G GVI
Sbjct: 349 YRDEVCLGGGVI 360
>gi|259500706|ref|ZP_05743608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners DSM 13335]
gi|302191396|ref|ZP_07267650.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus iners AB-1]
gi|309803957|ref|ZP_07698040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 11V1-d]
gi|309809301|ref|ZP_07703170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners SPIN 2503V10-D]
gi|312873992|ref|ZP_07734028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2052A-d]
gi|315653459|ref|ZP_07906380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners ATCC 55195]
gi|325911482|ref|ZP_08173893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners UPII 143-D]
gi|329921278|ref|ZP_08277716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners SPIN 1401G]
gi|259168090|gb|EEW52585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners DSM 13335]
gi|308163959|gb|EFO66223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 11V1-d]
gi|308170414|gb|EFO72438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners SPIN 2503V10-D]
gi|311090541|gb|EFQ48949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2052A-d]
gi|315489150|gb|EFU78791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners ATCC 55195]
gi|325476682|gb|EGC79837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners UPII 143-D]
gi|328934570|gb|EGG31074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners SPIN 1401G]
Length = 375
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 199/377 (52%), Gaps = 16/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D C ED +
Sbjct: 1 MTDNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGV---CTATEDFE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW V Y + EY+ GRTPNPD++CN IKF +F+D
Sbjct: 58 DVKRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK V D+ ++ KD KDQTYFLS ++Q QLK+ IFPL
Sbjct: 118 KLDADYIAMGHYAKTV---TDENGVVHMMR-PKDGNKDQTYFLSQVTQEQLKKAIFPLAD 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+SK +VR A Q L +KDS GICF+G+ F F++ + M G I+ ++ G +GK
Sbjct: 174 LSKPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTSD-GRIVGK 232
Query: 253 HWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR GL L G PW+VV K+++ N + V + Y S +
Sbjct: 233 HSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEV 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +GLP + + + C + + ++ + + N V+ E + + GQ
Sbjct: 293 SFFTGLPSNDTT-IHCTAKF--RYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIV 349
Query: 368 FYQGTRCIGSGVILESW 384
FY G C+G +I +++
Sbjct: 350 FYDGEECLGGAIIDKAY 366
>gi|387127926|ref|YP_006296531.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Methylophaga sp. JAM1]
gi|386274988|gb|AFI84886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylophaga sp. JAM1]
Length = 367
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 204/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V LSGGVDSSVA LL G ++K W E +EC E+D K A++V D
Sbjct: 6 KIVVGLSGGVDSSVAALLLKQQGFDVEGLFMKNWVDYADE---SECTVEDDRKDAQSVAD 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+V + + EYW V + ++EY+ GRTPNPD+LCN IKF AF+D + +
Sbjct: 63 KVGIVFHEANFAMEYWDYVFKHFLDEYKAGRTPNPDILCNREIKFKAFLDHAMELGGYLI 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + + K +L+ D KDQ+YFL L QAQL R +FPLG + K EVR
Sbjct: 123 ATGHYARV----REHDGKFQLLK-GLDNSKDQSYFLYTLGQAQLSRTLFPLGELPKTEVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + N D+KDS GICF+G+ +F EF+ R+I G + E G+ +G+H G +Y
Sbjct: 178 QIAEKAGFINHDKKDSTGICFIGERRFREFLGRYIPAQPGEMRTPE-GEKIGEHSGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + G PW+V KD++ +++V + + + +L L W++G
Sbjct: 237 TLGQRQGLGIGGRKNSSGEPWFVAGKDMQKRILYVVQGEHEWLYSTKL-TAEQLSWVAGD 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PE R K R+ C + +D NI V+ E + + GQ FYQ
Sbjct: 296 APELPCRASAKTRYRQPNQPCLI----TQDQQGNIQ-VEFDEPQRAVTPGQSVVFYQDDV 350
Query: 374 CIGSGVILES 383
C+G G+I+++
Sbjct: 351 CLGGGIIIDT 360
>gi|295099800|emb|CBK88889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Eubacterium cylindroides T2-87]
Length = 386
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/388 (37%), Positives = 211/388 (54%), Gaps = 40/388 (10%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW-------------FQEDFENFWTEC 65
+KV V LSGGVDS+VA LL G+ T +++ W Q+D C
Sbjct: 1 MKVLVGLSGGVDSAVAAYLLKEQGYDVTCCFMRNWDSYANGDIAGNPTIQDD------TC 54
Query: 66 PWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFG 125
P E+D + AKAV + +++PL+ V EYW V + EY GRTPNPD+LCN IKF
Sbjct: 55 PQEQDYQDAKAVAEHLNLPLQRVDFIKEYWDYVFKTFLSEYEKGRTPNPDILCNKYIKFD 114
Query: 126 AFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKR 185
AF D FD VA+GHY S E + L + D KDQTYFL +S A L +
Sbjct: 115 AFFDYAMKQGFDMVATGHYC-----SNMTEGSFTYLTRAADTNKDQTYFLCQVSPAALHK 169
Query: 186 LIFPLGCISKEEVRKFATQFDLPN-KDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEA 244
+FPLG + K EVR+ A + +L + +KDS GICF+G+ F +F++ ++ +G I++
Sbjct: 170 TLFPLGKLIKPEVREIAAKLNLESVATKKDSTGICFIGERNFRQFLSNYLPSQDGNIVDV 229
Query: 245 ETGDFLGKHWGFWFYTIGQRQGLRLP--GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLF 302
+TG +G+H G +YTIGQR+GL + GPW+V+ KDV+ NV+FV + + K L+
Sbjct: 230 DTGKVVGRHVGVLYYTIGQRKGLNIDHEKGPWFVIGKDVQKNVLFVCHHTH----KEWLY 285
Query: 303 R----VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQ 358
V + W+ E + CK R+ + ++ ++ ++D A+V +
Sbjct: 286 SDSCLVKGINWIVKDKNEIPEKCTCKFRYRQP--DQDIYLKVLDD---TTALVSYPQKIA 340
Query: 359 GLAAGQFAAFYQGTRCIGSGVILESWDD 386
+ GQ A FY G +CIG GVI E + D
Sbjct: 341 SVTIGQEAVFYDGFKCIGGGVIEEVYVD 368
>gi|453045630|gb|EME93349.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa
PA21_ST175]
Length = 359
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 204/374 (54%), Gaps = 23/374 (6%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD++ +
Sbjct: 1 MSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEY---CTAREDLADAQAVCDRIGIK 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D + D +A+GHY
Sbjct: 58 LHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATGHY 117
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
+ D++ + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR A +
Sbjct: 118 VR----RRDRDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRAIAEK 172
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
L +KDS GICF+G+ +F++F+ +++ G I E G +G+H G ++TIGQR
Sbjct: 173 HGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETTEGKVIGRHSGLMYHTIGQR 231
Query: 265 QGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
QGL + G PWYV+ KD++ NV+ V + R + W++ + E
Sbjct: 232 QGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERP 291
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
RL+ KVR+ +C ++E + +G + E + + GQ FY G C+G G
Sbjct: 292 RRLRAKVRYRQSDQDC--VLEKIAEGYRAV----FDEPQRAVTPGQSVVFYDGDACLGGG 345
Query: 379 VI--LESWDDQGFP 390
VI E+WD G P
Sbjct: 346 VIETAEAWDFGGRP 359
>gi|417989552|ref|ZP_12630056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei A2-362]
gi|410537939|gb|EKQ12501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei A2-362]
Length = 377
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 195/371 (52%), Gaps = 18/371 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 11 IRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVA 67
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY
Sbjct: 68 SEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNADY 127
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHYA+V D+ +L D KDQTYFLS LSQ QLK+ +FP+G + K EV
Sbjct: 128 IAMGHYAQV---KTDENGIVHMLR-GADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPEV 183
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ F +F++ ++ G ++ + G G H G +
Sbjct: 184 RKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEXGTHDGLMY 242
Query: 259 YTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
YTIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 243 YTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGQ 302
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P E + + K R+ + + + + +DG A V + + GQ FY G
Sbjct: 303 APAEGTHMTAKFRYRQ--RDTGVTLHYHDDG---TATVDFDVPVRAITPGQAVVFYDGDE 357
Query: 374 CIGSGVILESW 384
C+G G I ++
Sbjct: 358 CLGGGTIDAAY 368
>gi|432674152|ref|ZP_19909637.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE142]
gi|431216658|gb|ELF14255.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE142]
Length = 368
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 209/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDCEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K S+L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSSLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|417075224|ref|ZP_11950370.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus MTCC
5462]
gi|328462804|gb|EGF34672.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus MTCC
5462]
Length = 372
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 196/370 (52%), Gaps = 18/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 7 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVAS 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY+
Sbjct: 64 EIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNADYI 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYA+V D++ +L D KDQTYFLS LSQ QLK+ +FP+G + K EVR
Sbjct: 124 AMGHYAQV---KTDEQGVVHMLR-GADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPEVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS GICF+G+ F +F++ ++ G ++ + G G H G +Y
Sbjct: 180 KIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEKGTHDGLMYY 238
Query: 260 TIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 239 TIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGEA 298
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + + K R+ + + I + +DG A+V + + GQ FY G C
Sbjct: 299 PADGTHMTAKFRYRQ--RDTGVTIHYHDDG---TAIVDFDVPVRAITPGQAVVFYDGEEC 353
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 354 LGGGTIDAAY 363
>gi|253574914|ref|ZP_04852254.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845960|gb|EES73968.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 378
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 207/371 (55%), Gaps = 27/371 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + F C E D + + VC+
Sbjct: 10 RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNW--DDTDEFGY-CTAEADAEDVRRVCE 66
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+D+P V+ +Y+ V +Y +EEY+ GRTPNPDV+CN IKFG F++ + DYV
Sbjct: 67 QIDIPYYTVNFEKQYYDKVFAYFLEEYKRGRTPNPDVMCNREIKFGEFLNKALDLGADYV 126
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+VV +E K L D KDQTYFL+ L+Q QL + +FP+G + K EVR
Sbjct: 127 ATGHYARVV-----EENKTYKLLRGVDSNKDQTYFLNALNQEQLSKAMFPIGHLPKPEVR 181
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS G+CF+G+ F EF++ ++ G +++ TG+ G+H G +Y
Sbjct: 182 RIAEEAGLYTAKKKDSTGVCFIGERNFKEFLSNYLPAQSGDMIDIVTGEVKGRHDGLMYY 241
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRV----GSLKWLS 311
T+GQRQGL + G PW+V +KD++ N+++V + DK L+ + W++
Sbjct: 242 TLGQRQGLGIGGSGTGEPWFVADKDLERNILYVVQG----DKHPSLYSTSLIASGVNWIA 297
Query: 312 GLP--PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
G PE + K R+ + + + DG ++A E + + GQ FY
Sbjct: 298 GADKMPEGPYKCTAKFRYRQP--DQGVTLTKQPDGTVHVA---FDEPQKAITPGQAVVFY 352
Query: 370 QGTRCIGSGVI 380
QG C+G G I
Sbjct: 353 QGEECLGGGTI 363
>gi|406939092|gb|EKD72185.1| tRNA-specific 2-thiouridylase mnmA [uncultured bacterium]
Length = 359
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 200/368 (54%), Gaps = 20/368 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
+ V +SGGVDSSV+ LL GH ++K W +D + F CP DM+ A+AVCDQ
Sbjct: 6 IIVGMSGGVDSSVSALLLKEEGHHVEGVFMKNWEADDTDTF---CPASVDMQDAQAVCDQ 62
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ + L V+ EYW++V + + EY+ GRTPNPD+LCN IKF AF++ D++A
Sbjct: 63 LQIELHRVNFAAEYWEHVFTDFLTEYQAGRTPNPDILCNQEIKFNAFLNYAKQRGADFIA 122
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA+ D Y + L D KDQ+YFL L+Q QL +FP+G ++K+ VR
Sbjct: 123 TGHYARC---QRDNTYFQLLKGL--DAQKDQSYFLYTLTQEQLAHSLFPIGHLTKQAVRD 177
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + N +KDS GICF+G+ KF F+ ++ G I E G LGKH G FYT
Sbjct: 178 IANKAGFNNHAKKDSTGICFIGERKFKTFLNDYLPLKPGNI-ETIEGTVLGKHDGLAFYT 236
Query: 261 IGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+GQRQGL++ G PWYV+ K+ + N + V++ + R L W+ P
Sbjct: 237 LGQRQGLKIGGLKHTNEAPWYVIGKNQERNTLIVAQGQENPLLYRSSLIAEQLHWIVSEP 296
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
+ ++ K+R+ C + H D E + +E + + GQ FY G +C
Sbjct: 297 LQFPLKVSAKIRYRQKDQACTI---HPID--EKQYKIDFAEPQRAITPGQSVVFYTGEQC 351
Query: 375 IGSGVILE 382
+G G+I++
Sbjct: 352 LGGGIIIK 359
>gi|423612598|ref|ZP_17588459.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD107]
gi|401246187|gb|EJR52539.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD107]
Length = 371
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 203/367 (55%), Gaps = 16/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W D EN C ED VC+
Sbjct: 9 RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIEVCN 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++ ++ DYV
Sbjct: 66 QIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAIALGADYV 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG + K ++R
Sbjct: 126 ATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GKH G +Y
Sbjct: 181 EMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGKHDGLMYY 239
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ V K++K N+++V + +++ ++ W+S E+
Sbjct: 240 TIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEK 299
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
K R+ + + ++ V+ EN + E + + GQ FY G C+G
Sbjct: 300 EFTCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGG 354
Query: 378 GVILESW 384
I E +
Sbjct: 355 ATIDEVY 361
>gi|28806117|dbj|BAC59393.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Vibrio parahaemolyticus RIMD 2210633]
Length = 362
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 201/365 (55%), Gaps = 21/365 (5%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD++ +
Sbjct: 1 MSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCDKLGIH 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYVASGH 143
L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A +E DY+A GH
Sbjct: 58 LHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADYIAMGH 117
Query: 144 YAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFAT 203
Y + S + KP +L D KDQ+YFL LS Q+ R +FP+G + K EVR+ A
Sbjct: 118 YVR--RSFPENGEKPQMLR-GLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEVRRIAE 174
Query: 204 QFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQ 263
+ L +KDS GICF+G+ KF+EF+ R++ G I E G+ +G+H G ++T+GQ
Sbjct: 175 EQGLITAKKKDSTGICFIGERKFTEFLGRYLPAQPGNI-ETPEGEVIGQHQGLMYHTLGQ 233
Query: 264 RQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
R+GL + G PW+V EKD+ NV+ + K L W+ P
Sbjct: 234 RKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHWVDREPI 293
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
++ + K R+ C ++ ++D ENI V+ E + GQ A FY+ C+
Sbjct: 294 RDVMKCTVKTRYRQQDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAVFYKDDVCL 348
Query: 376 GSGVI 380
G G+I
Sbjct: 349 GGGII 353
>gi|406596653|ref|YP_006747783.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas macleodii ATCC
27126]
gi|406373974|gb|AFS37229.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas macleodii ATCC
27126]
Length = 369
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 205/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K A+AV D
Sbjct: 11 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVAD 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A + DY
Sbjct: 68 KLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGADY 127
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D +++ + D KDQ+YFL L + + + +FP+G I K V
Sbjct: 128 IATGHYVR--RREVDGKWQ---MLRGLDNNKDQSYFLYTLGEEHVAKTLFPVGDIEKPLV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + L D+KDS GICF+G+ KF +F+AR++ GVI AE G+ +G+H G +
Sbjct: 183 RKIAEEQGLITHDKKDSTGICFIGERKFKDFLARYLPAQPGVIETAE-GEEIGQHEGLMY 241
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NV+ V + RL+ G L
Sbjct: 242 HTLGQRKGLHIGGLAKYGDDPWYVVDKDVARNVLIVGQGA----DHPRLYSKGLVAKQLH 297
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ E R K R+ C I +D + I V+ E + + GQ A F
Sbjct: 298 WVDRKTITEPVRAVVKTRYRQADIPCT--ITPTQD--DTIEVI-FDEPQKAVTPGQSAVF 352
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 353 YSDEVCLGGGII 364
>gi|410861555|ref|YP_006976789.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas macleodii AltDE1]
gi|410818817|gb|AFV85434.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas macleodii AltDE1]
Length = 375
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 202/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K A+AV D
Sbjct: 17 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVAD 73
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A + DY
Sbjct: 74 KLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGADY 133
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D +++ + D KDQ+YFL L + + + +FP+G I K V
Sbjct: 134 IATGHYVR--RREVDGKWQ---MLRGLDNNKDQSYFLYTLGEEHVAKTLFPVGDIEKPLV 188
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + L D+KDS GICF+G+ KF +F+AR++ GVI AE G+ +G+H G +
Sbjct: 189 RKIAEEQGLITHDKKDSTGICFIGERKFKDFLARYLPAQPGVIETAE-GEEIGQHEGLMY 247
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NV+ V + RL+ G L
Sbjct: 248 HTLGQRKGLHIGGLAKYGDDPWYVVDKDVARNVLIVGQGA----DHPRLYSKGLVAKQLH 303
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ E R K R+ C + ++ V E + + GQ A F
Sbjct: 304 WVDRKTITEPMRAVVKTRYRQADIPCTITPTQ-----DDTIEVMFDEPQKAVTPGQSAVF 358
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 359 YIDEVCLGGGII 370
>gi|56963351|ref|YP_175082.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Bacillus clausii KSM-K16]
gi|81366419|sp|Q5WHN4.1|MNMA_BACSK RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|56909594|dbj|BAD64121.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Bacillus clausii KSM-K16]
Length = 364
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 16/370 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++ +V V +SGGVDSSV LL G+ ++K W + F C ED +
Sbjct: 1 MKKREDTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDSNDSGF---CSATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
+ V Q+ +P V+ +YW V +Y +EEY+ GRTPNPDV+CN IKF AF++
Sbjct: 58 DVERVAQQLGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHAI 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ DYVA+GHYA++ D EY+ L D KDQTYFL+ LSQ QL +++FPLG
Sbjct: 118 SLGADYVATGHYAQL--QELDGEYR---LIKGADANKDQTYFLNALSQKQLSKVMFPLGH 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + +L +KDS GICF+G+ F EF+ + G +E G G+
Sbjct: 173 LQKAEVRKIAAEAELATATKKDSTGICFIGERDFKEFLQTFLPAQPGR-METMDGIDKGQ 231
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YT+GQRQGL + G PW+V++KD++ NV+ V + Y+ + W+
Sbjct: 232 HDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGYHHPGLYSDGLWATDMNWI 291
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+ E S CK + + + + EDG A +Q + + + GQ Y+
Sbjct: 292 A--KEERTSPFTCKAKFRYRQEDQGVTVFPKEDG---RAFIQFDQPQRAITPGQAVVLYE 346
Query: 371 GTRCIGSGVI 380
G RCIG GVI
Sbjct: 347 GDRCIGGGVI 356
>gi|326794627|ref|YP_004312447.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1]
gi|326545391|gb|ADZ90611.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1]
Length = 371
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 202/367 (55%), Gaps = 19/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C +ED+ A+AVCD
Sbjct: 11 KVIVGMSGGVDSSVSALLLMQQGYQVEGLFMKNWDEDDGTEY---CTAKEDLADAQAVCD 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ +++ DY+
Sbjct: 68 KLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEYAMALKADYI 127
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + E ++L D KDQ+YFL + + ++ + FP+G + K EVR
Sbjct: 128 ATGHYVR----KGFDENGNALLLKGLDNNKDQSYFLYAVGKGEIAKTFFPVGELEKPEVR 183
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + DL ++KDS GICF+G+ +F +F+ +++ G I E GD +G+H G ++
Sbjct: 184 RLAEEHDLITHNKKDSTGICFIGERRFKDFLEQYLPAQPGDI-ETLEGDKIGRHHGLMYH 242
Query: 260 TIGQRQGL------RLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PWYVV KD++ NV+ V++ + + W++
Sbjct: 243 TIGQRQGLGIGGLSKYPDEPWYVVAKDLERNVLQVTQGGQHPSLYKTHLIADNFDWVARE 302
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + K R+ +C I ++DG V SE + + GQ FY
Sbjct: 303 KPSLPLTCKAKCRYRQPDQDCT--ISELKDG---RIEVSFSEPQRAITPGQSVVFYLDEN 357
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 358 CLGGGII 364
>gi|352103923|ref|ZP_08960163.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Halomonas sp. HAL1]
gi|350599101|gb|EHA15196.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Halomonas sp. HAL1]
Length = 360
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 198/368 (53%), Gaps = 24/368 (6%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSV+ LL G+ ++K W ++D + C +ED+ A+AVC+++ +
Sbjct: 1 MSGGVDSSVSALLLMQQGYEVEGLFMKNWDEDDGTEY---CTAKEDLADAEAVCEKLGIK 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
L + EYW NV + + EY+ GRTPNPD+LCN IKF F++ + D +A+GHY
Sbjct: 58 LHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKVFLEYAEMLGADKIATGHY 117
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
+ +E +P +L+ D KDQ+YFL + +A + R +FP+G + K VR A +
Sbjct: 118 VR----QGVREGRPRLLK-GLDGNKDQSYFLHAVPEAAIARTLFPVGELEKPAVRALAEE 172
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
L +KDS GICF+G+ +F +F+ +++ G I E GD +GKH G +YT+GQR
Sbjct: 173 HGLITAKKKDSTGICFIGERRFRDFLQQYLPAQPGTI-ETPDGDVIGKHMGLMYYTLGQR 231
Query: 265 QGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
QGL + G PWYV KD+ NV+ + + ++ W++G PP +
Sbjct: 232 QGLGIGGLANYSEEPWYVAAKDLDRNVLIAVQGKHDQLLYSDTLATEAMDWVAGEPPVQQ 291
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQ--GLAAGQFAAFYQGTRCIG 376
R K R+ +C I + DGG V+++ DD + GQ Y G C+G
Sbjct: 292 GRFTAKTRYRQS--DCGCEIRVLPDGG-----VEVTFDDPQWAVTPGQSLVLYDGDICLG 344
Query: 377 SGVILESW 384
GVI +W
Sbjct: 345 GGVIRATW 352
>gi|373452218|ref|ZP_09544134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Eubacterium sp. 3_1_31]
gi|371966907|gb|EHO84386.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Eubacterium sp. 3_1_31]
Length = 387
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 207/387 (53%), Gaps = 40/387 (10%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW-------------FQEDFENFWTECP 66
KV + LSGGVDS+VA +L G+ T +++ W Q+D CP
Sbjct: 4 KVLLGLSGGVDSAVAAYILKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDV------CP 57
Query: 67 WEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGA 126
E+D AKAV D++ +PL V EYW NV +Y ++EY+ GRTPNPD+LCN IKF A
Sbjct: 58 QEQDYLDAKAVADKLGLPLLRVDFVKEYWDNVFTYFLDEYQKGRTPNPDILCNKYIKFDA 117
Query: 127 FMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRL 186
FM + FD +A+GHYA+V H+ S + D KDQTYFL +SQ L
Sbjct: 118 FMKYARKLGFDILATGHYAQVEHTPL-----YSRMLRGADSNKDQTYFLCQVSQDALAHA 172
Query: 187 IFPLGCISKEEVRKFATQFDLPN-KDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAE 245
+FP+G ++K EVR A + +L + +KDS GICF+G+ F EF+ ++ +G I++
Sbjct: 173 LFPIGNLNKAEVRVIAQKLELESVATKKDSTGICFIGERNFKEFLQNYLPSQDGDIVDIH 232
Query: 246 TGDFLGKHWGFWFYTIGQRQGLRLPG--GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
+ + +G+H G +YTIGQR+GL + G GPW+VV KDV N+++V+ ++K L+
Sbjct: 233 SLEVIGRHIGVLYYTIGQRKGLGIGGNKGPWFVVGKDVHKNILYVTNG----NEKDWLYS 288
Query: 304 ----VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQG 359
V + WL PE K R+ + +L E +V +
Sbjct: 289 TSCIVSGVNWLRPHKPENEYACTAKFRYRQQDHEISLQFID-----ETTVLVCYPQGVAS 343
Query: 360 LAAGQFAAFYQGTRCIGSGVILESWDD 386
+ GQ A FY G C+G GVI E + D
Sbjct: 344 VTCGQEAVFYDGQECLGGGVIEEVFCD 370
>gi|410663201|ref|YP_006915572.1| tRNA-specific 2-thiouridylase MnmA [Simiduia agarivorans SA1 = DSM
21679]
gi|409025558|gb|AFU97842.1| tRNA-specific 2-thiouridylase MnmA [Simiduia agarivorans SA1 = DSM
21679]
Length = 364
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 205/372 (55%), Gaps = 21/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G++ ++K W ++D + C +ED+ A+AVCD
Sbjct: 5 KVVVGMSGGVDSSVSALLLLQQGYAVEGLFMKNWDEDDGTEY---CTAKEDLADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + + EYR GRTPNPD+LCN IKF F+ + D++
Sbjct: 62 KLGIILHTANFAAEYWDNVFEHFLAEYRAGRTPNPDILCNREIKFKVFLHYAELLGADFI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + + + + L+ D KDQ+YFL+ + +A++ + +FP+G + K EVR
Sbjct: 122 ATGHYVRRLEKNGH-----TWLQKGLDNNKDQSYFLNAVGEAEIAKTLFPVGELEKPEVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + DL ++KDS GICF+G+ +F +F+ +++ G ++ E G +G+H G +Y
Sbjct: 177 RLAEEHDLITHNKKDSTGICFIGERRFKDFLEQYLPAQPGEMVTLE-GHTIGQHQGLMYY 235
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + P PW+VV KD+ N + V++ W+SG+
Sbjct: 236 TLGQRQGLGIGGVKGYPEEPWFVVAKDLDANRLIVTQGTDHTALYTDALTASQANWISGM 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P +S + K R+ C +E DG + V + + + GQ+ FYQG
Sbjct: 296 PTLPMS-CKAKTRYRQPDQGCR--VELTPDG---LLQVVFDQPQRAVTPGQYVVFYQGDV 349
Query: 374 CIGSGVILESWD 385
C+G VI S++
Sbjct: 350 CLGGAVIERSFN 361
>gi|258508299|ref|YP_003171050.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus GG]
gi|257148226|emb|CAR87199.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus GG]
Length = 372
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 195/370 (52%), Gaps = 18/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 7 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVAS 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY+
Sbjct: 64 EIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNADYI 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYA+V D++ +L D KDQTYFLS LSQ QLK+ +FP+G + K EVR
Sbjct: 124 AMGHYAQV---KTDEQGAVHMLR-GADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPEVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS GICF+G+ F +F++ ++ G ++ + G G H G +Y
Sbjct: 180 KIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEKGTHDGLMYY 238
Query: 260 TIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 239 TIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGEA 298
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + + K R+ + + I + +DG A V + + GQ FY G C
Sbjct: 299 PADGTHMTAKFRYRQ--RDTGVTIHYHDDG---TATVDFDVPVRAITPGQAVVFYDGEEC 353
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 354 LGGGTIDAAY 363
>gi|237746906|ref|ZP_04577386.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS]
gi|229378257|gb|EEO28348.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS]
Length = 369
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 197/375 (52%), Gaps = 26/375 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV + +SGGVDSSV+ LL G+ ++K W +D F C +D A V D
Sbjct: 5 KVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEF---CSARQDWLDAVTVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +EVV+ EY + V S ++EY GRTPNPDVLCN IKF AF+D S+ + +
Sbjct: 62 VIGIDIEVVNFAAEYKERVFSEFLKEYEAGRTPNPDVLCNAEIKFKAFLDHAISLGAERI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V ++ E +V D KDQ+YFL L+Q QL + IFPLG I K EVR
Sbjct: 122 ATGHYARVRENNGFFELLKAV-----DDTKDQSYFLHRLNQQQLSKTIFPLGEIRKTEVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + LPN +KDS GICF+G+ F F+ R++ G I E GD +G+H G FY
Sbjct: 177 QIAEKIGLPNAKKKDSTGICFIGERPFRAFLNRYLSYEPGPIKTPE-GDEIGQHVGLSFY 235
Query: 260 TIGQRQGL--------RLPGG---PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLK 308
TIGQR+G+ R P G WYV KD NN ++V + + G
Sbjct: 236 TIGQRKGIGIGGLKSFRRPDGTSDAWYVARKDTHNNTLYVVQGHDHPWLLSPSLEAGQSS 295
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++G+ PE+ L K R+ C L + G + + + GQ A F
Sbjct: 296 WIAGISPED-GELSVKTRYRQKDVPCVLNVT-----GNSELTASFEKPQWAITPGQSAVF 349
Query: 369 YQGTRCIGSGVILES 383
Y+G C+G G+I S
Sbjct: 350 YKGNVCLGGGIIDNS 364
>gi|218232235|ref|YP_002369206.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus B4264]
gi|218160192|gb|ACK60184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus B4264]
Length = 372
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 204/367 (55%), Gaps = 16/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W D EN C ED VC+
Sbjct: 10 RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIEVCN 66
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++ ++ DYV
Sbjct: 67 QIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAIALGADYV 126
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG + K ++R
Sbjct: 127 ATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIR 181
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GKH G +Y
Sbjct: 182 EMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGKHDGLMYY 240
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ V K++K N+++V + +++ ++ W+S E+
Sbjct: 241 TIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSN--KEK 298
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ +C + + + ++ V+ EN + E + + GQ FY G C+G
Sbjct: 299 ETEFKCTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGG 355
Query: 378 GVILESW 384
I E +
Sbjct: 356 ATIDEVY 362
>gi|392972285|ref|ZP_10337677.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus equorum subsp.
equorum Mu2]
gi|403046388|ref|ZP_10901858.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus sp. OJ82]
gi|392509998|emb|CCI60980.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus equorum subsp.
equorum Mu2]
gi|402763795|gb|EJX17887.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus sp. OJ82]
Length = 370
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/373 (36%), Positives = 203/373 (54%), Gaps = 19/373 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV +L G+ ++K W D EN C ED AVC+
Sbjct: 7 RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIAVCN 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ + DYV
Sbjct: 64 QIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGADYV 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V + ++ +E+ + D KDQTYFL+ LSQ QL R++FP+G I K E
Sbjct: 124 ATGHYARV------RRHEDGHVEMLRGVDNNKDQTYFLNQLSQDQLSRVMFPIGDIEKSE 177
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + DL +KDS GICF+G+ F EF+++++ G ++ TGD +G H G
Sbjct: 178 VRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGDMVTL-TGDKIGTHAGLM 236
Query: 258 FYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
+YTIGQR GL + G PW+VV K++ +NV++V + ++ + +++ +
Sbjct: 237 YYTIGQRHGLGIGGDGDPWFVVGKNLDDNVLYVEQGFHHDALYSDYLIASDISFVNTVDL 296
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
EE K R Y V+ +N V +E + + GQ Y G C+
Sbjct: 297 EEGFECSAKFR-----YRQKDTKVFVKKENDNAIRVLFAEPVRAITPGQSVVLYDGDVCL 351
Query: 376 GSGVILESWDDQG 388
G I + + + G
Sbjct: 352 GGATIDDVFKESG 364
>gi|419753185|ref|ZP_14279589.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa
PADK2_CF510]
gi|424941891|ref|ZP_18357654.1| tRNA methyltransferase [Pseudomonas aeruginosa NCMG1179]
gi|346058337|dbj|GAA18220.1| tRNA methyltransferase [Pseudomonas aeruginosa NCMG1179]
gi|384400307|gb|EIE46666.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa
PADK2_CF510]
Length = 363
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 205/376 (54%), Gaps = 23/376 (6%)
Query: 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82
V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD++
Sbjct: 3 VGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEY---CTAREDLADAQAVCDRIG 59
Query: 83 VPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASG 142
+ L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D + D +A+G
Sbjct: 60 IKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATG 119
Query: 143 HYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFA 202
HY + D++ + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR A
Sbjct: 120 HYVR----RRDRDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRAIA 174
Query: 203 TQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIG 262
+ L +KDS GICF+G+ +F++F+ +++ G I E G +G+H G ++TIG
Sbjct: 175 EKHGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETTEGKVIGRHSGLMYHTIG 233
Query: 263 QRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
QRQGL + G PWYV+ KD++ NV+ V + R + W++ + E
Sbjct: 234 QRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELE 293
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
RL+ KVR+ +C ++E + +G + E + + GQ FY G C+G
Sbjct: 294 RPRRLRAKVRYRQSDQDC--VLEKIAEGYRAV----FDEPQRAVTPGQSVVFYDGDVCLG 347
Query: 377 SGVI--LESWDDQGFP 390
GVI E+WD G P
Sbjct: 348 GGVIETAEAWDFGGRP 363
>gi|146311302|ref|YP_001176376.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter sp. 638]
gi|205816867|sp|A4W9E5.1|MNMA_ENT38 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|145318178|gb|ABP60325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter sp. 638]
Length = 369
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 206/375 (54%), Gaps = 35/375 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + D+
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 124 IATGHYVR----RADVDGKSQLLR-GLDGNKDQSYFLYTLGHDQIVQSLFPVGELEKPEV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAENLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDDVGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMI---EHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P R K R+ C + E VE V+ E + GQ
Sbjct: 294 WVDREPFTGTLRCTVKTRYRQTDIPCTVTALDEERVE--------VRFDEPVSAVTPGQS 345
Query: 366 AAFYQGTRCIGSGVI 380
A FY G C+G G+I
Sbjct: 346 AVFYSGEICLGGGII 360
>gi|385827971|ref|YP_005865743.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus GG]
gi|259649616|dbj|BAI41778.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus GG]
Length = 377
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 195/370 (52%), Gaps = 18/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 12 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVAS 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY+
Sbjct: 69 EIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNADYI 128
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYA+V D++ +L D KDQTYFLS LSQ QLK+ +FP+G + K EVR
Sbjct: 129 AMGHYAQV---KTDEQGAVHMLR-GADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPEVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS GICF+G+ F +F++ ++ G ++ + G G H G +Y
Sbjct: 185 KIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEKGTHDGLMYY 243
Query: 260 TIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 244 TIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGEA 303
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + + K R+ + + I + +DG A V + + GQ FY G C
Sbjct: 304 PADGTHMTAKFRYRQ--RDTGVTIHYHDDG---TATVDFDVPVRAITPGQAVVFYDGEEC 358
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 359 LGGGTIDAAY 368
>gi|188534099|ref|YP_001907896.1| tRNA-specific 2-thiouridylase MnmA [Erwinia tasmaniensis Et1/99]
gi|188029141|emb|CAO97013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erwinia tasmaniensis Et1/99]
Length = 369
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/375 (37%), Positives = 205/375 (54%), Gaps = 35/375 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAEDLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIYLHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL L Q+ + +FP+G ++K EV
Sbjct: 124 IATGHYVR----RQDVDGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELAKPEV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF+EF++R++ G IL + GD +G+H G +
Sbjct: 179 RRIAEQLELVTAKKKDSTGICFIGERKFTEFLSRYLPAQPGPILSVD-GDNVGQHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NNV+ V++ + + RL G L
Sbjct: 238 HTLGQRKGLGIGGRKEANDDPWYVVDKDVANNVLVVAQGH----EHPRLMSTGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLM---IEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ R K R+ C + E +E V+ + GQ
Sbjct: 294 WVDRDSLTTPLRCTVKTRYRQQDIPCTVTPVDAERIE--------VRFDFPVAAVTPGQS 345
Query: 366 AAFYQGTRCIGSGVI 380
A FY C+G G+I
Sbjct: 346 AVFYLDEVCLGGGII 360
>gi|56419544|ref|YP_146862.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus
HTA426]
gi|448237185|ref|YP_007401243.1| tRNA-specific 2-thiouridylase mnmA 1 [Geobacillus sp. GHH01]
gi|81347762|sp|Q5L186.1|MNMA1_GEOKA RecName: Full=tRNA-specific 2-thiouridylase MnmA 1
gi|56379386|dbj|BAD75294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus kaustophilus HTA426]
gi|445206027|gb|AGE21492.1| tRNA-specific 2-thiouridylase mnmA 1 [Geobacillus sp. GHH01]
Length = 370
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 207/380 (54%), Gaps = 38/380 (10%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D N C ED + K
Sbjct: 2 KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNW---DDTNDDGVCTATEDYEDVKR 58
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V +Q+ +P V+ EYW V +Y I+E + GRTPNPDVLCNT IKF AF+D S++
Sbjct: 59 VANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA++ ++E L KD KDQTYFLS L+ L +++FP+G ++K+
Sbjct: 119 DYIATGHYARI-----NRENGQIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGELTKD 173
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVRK A + +L N ++KDS GICF+G+ F F+ ++ G I + G+ LG H G
Sbjct: 174 EVRKIAQELNLVNANKKDSTGICFIGERNFKNFLKNYLPAQPGEIRSLD-GEVLGTHDGL 232
Query: 257 WFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+YTIGQR+GL + G PWYVV+KD++NNV+ V++ LF +G
Sbjct: 233 MYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQG----KNHPALFS-------TG 281
Query: 313 LPPEEISRLQCKVRHGPGFYNCNL----------MIEHVEDGGENIAVVQLSEDDQGLAA 362
L IS + VR P + C + H+ G A V+ + + +
Sbjct: 282 LIASNISFINGDVR--PRTFACTAKFRYRQEDQKVTVHIRPNG--TAFVEFEKPVKAVTP 337
Query: 363 GQFAAFYQGTRCIGSGVILE 382
GQ A FY C+GS +I E
Sbjct: 338 GQVAVFYDNDVCLGSAIIDE 357
>gi|375260300|ref|YP_005019470.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella oxytoca KCTC 1686]
gi|397657381|ref|YP_006498083.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella oxytoca E718]
gi|423102538|ref|ZP_17090240.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella oxytoca 10-5242]
gi|365909778|gb|AEX05231.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella oxytoca KCTC 1686]
gi|376388014|gb|EHT00715.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella oxytoca 10-5242]
gi|394345836|gb|AFN31957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Klebsiella oxytoca E718]
Length = 368
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 210/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIISVD-GDEVGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 238 HTLGQRKGLGIGGIKDGGEDPWYVVDKDVENNILIVAQGH----DHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C+ ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPLTGTLRCTVKTRYRQTDIPCS--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y+ C+G G+I
Sbjct: 349 YRDEVCLGGGII 360
>gi|260102614|ref|ZP_05752851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus helveticus DSM 20075]
gi|417006960|ref|ZP_11945232.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus MTCC
5463]
gi|260083568|gb|EEW67688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus helveticus DSM 20075]
gi|328468659|gb|EGF39653.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus MTCC
5463]
Length = 375
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 197/370 (53%), Gaps = 16/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W D C ED + K V D
Sbjct: 8 RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGV---CTATEDYEDVKKVAD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y + EY+ GRTPNPDV+CN++IKF +F+D ++ DY+
Sbjct: 65 KIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLDADYI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYAK V + + + KD KDQTYFLS L+Q Q+K++IFPL ++K +VR
Sbjct: 125 AMGHYAKTVKDADGLTH----MMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLTKPQVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A L +KDS GICF+G+ F +F++ + G ++ + G +G+H G +Y
Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPD-GKVVGEHAGLMYY 239
Query: 260 TIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL L PW+VV KD+K N + V + Y S + + + +G P
Sbjct: 240 TIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDMSFFTGKP 299
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
++ C + + C++ + +N A V E + + GQ YQG C
Sbjct: 300 DHDV-EFHCSAKF--RYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVLYQGEEC 356
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 357 LGGGNIDAAY 366
>gi|392983704|ref|YP_006482291.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa DK2]
gi|392319209|gb|AFM64589.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa DK2]
Length = 359
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 204/374 (54%), Gaps = 23/374 (6%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD++ +
Sbjct: 1 MSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEY---CTAREDLADAQAVCDRIGIK 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D + D +A+GHY
Sbjct: 58 LHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATGHY 117
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
+ D++ + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR A +
Sbjct: 118 VR----RRDRDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRAIAEK 172
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
L +KDS GICF+G+ +F++F+ +++ G I E G +G+H G ++TIGQR
Sbjct: 173 HGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETTEGKVIGRHSGLMYHTIGQR 231
Query: 265 QGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
QGL + G PWYV+ KD++ NV+ V + R + W++ + E
Sbjct: 232 QGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERP 291
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
RL+ KVR+ +C ++E + +G + E + + GQ FY G C+G G
Sbjct: 292 RRLRAKVRYRQSDQDC--VLEKIAEGYRAV----FDEPQRAVTPGQSVVFYDGDVCLGGG 345
Query: 379 VI--LESWDDQGFP 390
VI E+WD G P
Sbjct: 346 VIETAEAWDFGGRP 359
>gi|343502103|ref|ZP_08739964.1| tRNA-specific 2-thiouridylase MnmA [Vibrio tubiashii ATCC 19109]
gi|418481273|ref|ZP_13050320.1| tRNA-specific 2-thiouridylase MnmA [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342815526|gb|EGU50442.1| tRNA-specific 2-thiouridylase MnmA [Vibrio tubiashii ATCC 19109]
gi|384571073|gb|EIF01612.1| tRNA-specific 2-thiouridylase MnmA [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 374
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 208/375 (55%), Gaps = 22/375 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124
Query: 139 VASGHYAKVVHSSADQEY---KPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A GHY + + ++ KP +L D KDQ+YFL LS Q+ R +FP+G + K
Sbjct: 125 IAMGHYVRRTFPTPEEVENGDKPRMLR-GLDNNKDQSYFLYTLSSDQVARSLFPVGDLEK 183
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + DL +KDS GICF+G+ KF++F+ R++ G I E G +GKH G
Sbjct: 184 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLGRYLPAQPGDI-ETPEGKVIGKHNG 242
Query: 256 FWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
++T+GQR+GL + G PW+V +KD+K NV+ + K + L
Sbjct: 243 LMYHTLGQRKGLHIGGQKGGGGNEDPWFVGDKDLKRNVLIAVQGKDHPMLKSQGLIASQL 302
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ +E + K R+ C ++ ++D ENI V+ E + GQ A
Sbjct: 303 HWVAREAIKEPLQCTVKTRYRQTDIPCTII--PIDD--ENIKVI-FDEPQIAVTPGQSAV 357
Query: 368 FYQGTRCIGSGVILE 382
FY+ C+G G+I E
Sbjct: 358 FYKDDVCLGGGIIEE 372
>gi|307545655|ref|YP_003898134.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halomonas elongata DSM 2581]
gi|307217679|emb|CBV42949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halomonas elongata DSM 2581]
Length = 370
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 201/372 (54%), Gaps = 20/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ +LL G ++K W ++D + C +ED+ A+AVC
Sbjct: 7 KVIVGMSGGVDSSVSAQLLLEQGFDVEGLFMKNWDEDDGTEY---CTAKEDLADAEAVCA 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF F++ + D++
Sbjct: 64 KLGIHLHTANFAAEYWDNVFEHFLAEYQAGRTPNPDILCNREIKFKVFLEYAEMLGADWI 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + A+++ +L+ D KDQ+YFL + +A + R +FP+G + K EVR
Sbjct: 124 ATGHYVR----RAERDGHARLLK-GLDANKDQSYFLHAVPEAAIARSLFPVGELEKSEVR 178
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L +KDS GICF+G+ +F +F+ +++ G I + GD +G+H G +Y
Sbjct: 179 DIAERHGLATARKKDSTGICFIGERRFRDFLRQYLPAQPGTIATPD-GDVIGEHMGLMYY 237
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + G PWYV KD++ NV+ V + + ++ W++G
Sbjct: 238 TLGQRQGLGIGGLANYSDAPWYVAGKDLERNVLTVVQGKHHPLLYTDSLATEAMDWVAGT 297
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP R K R+ C + + +DG E V + + + GQ Y G
Sbjct: 298 PPAREGRYHAKTRYRQDDVPCTMRVAE-DDGVE----VHFDDPQRAVTPGQSLVLYDGDI 352
Query: 374 CIGSGVILESWD 385
C+G GVI +W+
Sbjct: 353 CLGGGVIRATWN 364
>gi|161507327|ref|YP_001577281.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus DPC
4571]
gi|403515281|ref|YP_006656101.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus R0052]
gi|205816860|sp|A8YUQ2.1|MNMA_LACH4 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|160348316|gb|ABX26990.1| tRNA-methyltransferase [Lactobacillus helveticus DPC 4571]
gi|403080719|gb|AFR22297.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus R0052]
Length = 375
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 197/370 (53%), Gaps = 16/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W D C ED + K V D
Sbjct: 8 RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGV---CTATEDYEDVKKVAD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y + EY+ GRTPNPDV+CN++IKF +F+D ++ DY+
Sbjct: 65 KIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLDADYI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYAK V + + + KD KDQTYFLS L+Q Q+K++IFPL ++K +VR
Sbjct: 125 AMGHYAKTVKDADGLTH----MMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLTKPQVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A L +KDS GICF+G+ F +F++ + G ++ + G +G+H G +Y
Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPD-GKVVGEHAGLMYY 239
Query: 260 TIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL L PW+VV KD+K N + V + Y S + + + +G P
Sbjct: 240 TIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDMSFFTGKP 299
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
++ C + + C++ + +N A V E + + GQ YQG C
Sbjct: 300 DHDV-EFHCSAKF--RYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVLYQGEEC 356
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 357 LGGGNIDAAY 366
>gi|73662449|ref|YP_301230.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|123642746|sp|Q49Y59.1|MNMA_STAS1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|72494964|dbj|BAE18285.1| putative tRNA methyltransferase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 370
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 205/377 (54%), Gaps = 19/377 (5%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
K +V V +SGGVDSSV +L G+ ++K W D EN + C ED
Sbjct: 3 NKDTRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDNTD-ENGY--CTATEDYNDVI 59
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
AVC+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 60 AVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLG 119
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
DYVA+GHYA+V + ++ +E+ + D KDQTYFL+ LSQ+QL R++FP+G I
Sbjct: 120 ADYVATGHYARV------RRHEDGHVEMLRGVDNNKDQTYFLNQLSQSQLSRVMFPIGDI 173
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K+EVR+ A + DL +KDS GICF+G+ F EF+++++ G + G+ +G H
Sbjct: 174 EKKEVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGE-MRTLKGEKIGTH 232
Query: 254 WGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
G +YTIGQR GL + G PW+VV K++ +N+++V + ++ + +++
Sbjct: 233 AGLMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNILYVEQGFHHDALYSDYLIASDISFVN 292
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
+ E K R Y V++ EN V +E + + GQ Y G
Sbjct: 293 DVDLENGFECTAKFR-----YRQKDTKVFVKNENENAIRVIFNEPVRAITPGQSVVLYDG 347
Query: 372 TRCIGSGVILESWDDQG 388
C+G I + + + G
Sbjct: 348 DVCLGGATIDDVYKESG 364
>gi|205814741|sp|A8AHK2.2|MNMA_CITK8 RecName: Full=tRNA-specific 2-thiouridylase MnmA
Length = 368
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGQHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D E I V+ E + GQ A F
Sbjct: 294 WVDREPFSGTLRCTVKTRYRQTDIPCT--VKALDD--ERIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|333900511|ref|YP_004474384.1| tRNA-specific 2-thiouridylase mnmA [Pseudomonas fulva 12-X]
gi|333115776|gb|AEF22290.1| tRNA-specific 2-thiouridylase mnmA [Pseudomonas fulva 12-X]
Length = 371
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/379 (35%), Positives = 202/379 (53%), Gaps = 24/379 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL AG+ ++K W ++D + C +D+ A+AVCD
Sbjct: 8 RVIVGMSGGVDSSVSALLLLEAGYQVEGLFMKNWDEDDGTEY---CTAMDDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D + D +
Sbjct: 65 RIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D + + +L+ D KDQ+YFL + Q+ + +FP+G + K EVR
Sbjct: 125 ATGHYVR----RRDVDGRSELLK-GLDANKDQSYFLHAVGGEQIAKTLFPVGELEKPEVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A ++ L +KDS GICF+G+ +FS+F+ +++ G I E GD +GKH G ++
Sbjct: 180 AIAEKYQLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGNI-ETTEGDVIGKHHGLMYH 238
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G PWYV+ KD+ NV+ V + R + W++ +
Sbjct: 239 TIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLIVGQGNEHPWLFSRALHASQIYWVNPV 298
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
+ RL KVR+ C L E DG + + + GQ FY G
Sbjct: 299 ALDAPRRLTAKVRYRQADQACTL--ERTADGYR----ATFEQPQRAVTPGQSVVFYDGDV 352
Query: 374 CIGSGVI--LESWDDQGFP 390
C+G GVI E W +G P
Sbjct: 353 CLGGGVIESAEPW-SEGAP 370
>gi|377809548|ref|YP_005004769.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus claussenii ATCC BAA-344]
gi|361056289|gb|AEV95093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus claussenii ATCC BAA-344]
Length = 376
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 199/377 (52%), Gaps = 15/377 (3%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN + C ED K
Sbjct: 1 MSDNSNTRVVVGMSGGVDSSVVAYLLKKQGYDVVGVFMKNWDDTD-ENGY--CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V ++ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAKVAAKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAI 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ DYVA+GHYA+ ++ L + D KDQTYFLS LS QL R++FPLG
Sbjct: 118 SLGADYVATGHYAQAERDENGHQH----LLRAVDDNKDQTYFLSQLSADQLDRVMFPLGG 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K +VR+ A + L D+KDS GICF+G+ F EF+ ++ G ++ + G +G+
Sbjct: 174 MRKPQVREIAHEAGLAVADKKDSVGICFIGEENFREFLGNYLPAKSGQMMTMD-GKVMGE 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + GG PW+VV KD+ N+++V + + + + +
Sbjct: 233 HAGLMYYTIGQRRGLGIGGGSENNEPWFVVGKDLSKNILYVGQGFENPNLYATHLDASDM 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+++ L E +C + + + + +D + V E + + GQ
Sbjct: 293 HFVNKLGAERGHDFKCTAKFRYRAKDVPVTVHFSDDFSQ--VTVAFDEPARAITPGQALV 350
Query: 368 FYQGTRCIGSGVILESW 384
Y G CIG G+I ++
Sbjct: 351 LYDGDECIGGGIIDAAY 367
>gi|157146082|ref|YP_001453401.1| tRNA-specific 2-thiouridylase MnmA [Citrobacter koseri ATCC
BAA-895]
gi|157083287|gb|ABV12965.1| hypothetical protein CKO_01838 [Citrobacter koseri ATCC BAA-895]
Length = 383
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGQHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D E I V+ E + GQ A F
Sbjct: 309 WVDREPFSGTLRCTVKTRYRQTDIPCT--VKALDD--ERIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|432874290|ref|ZP_20093427.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE147]
gi|431404276|gb|ELG87534.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE147]
Length = 368
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTSTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|113461819|ref|YP_719888.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 129PT]
gi|123327501|sp|Q0I5Y6.1|MNMA_HAES1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|112823862|gb|ABI25951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Haemophilus somnus 129PT]
Length = 383
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 205/382 (53%), Gaps = 21/382 (5%)
Query: 6 PRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTEC 65
P+ S + KV +SGGVDSSV+ +L G+ ++K W ++D ++ C
Sbjct: 11 PKLTSLEIAKNSKKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 67
Query: 66 PWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFG 125
D+ A+AVCD++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF
Sbjct: 68 TAANDLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFK 127
Query: 126 AFMD-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLK 184
AF++ A+ + DY+A+GHY + S + + K L D KDQ+YFL LS+ Q+
Sbjct: 128 AFLEYAVEDLGADYIATGHYVR--RSDVNGQTK---LLRGLDSNKDQSYFLYTLSKDQVA 182
Query: 185 RLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEA 244
+ +FP+G I K VR A L +KDS GICF+G+ KF EF+AR + G I
Sbjct: 183 QSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKEFLARFLPAQPGEIRMV 242
Query: 245 ETGDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKK 298
+ G +GKH G +YT+GQR+GL + G P+YVVEKD+ NNV+ V++ +
Sbjct: 243 D-GKVIGKHDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGNDNSALL 301
Query: 299 RRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQ 358
+ L W+ LP + R K R+ C ++ + ++ V+ E
Sbjct: 302 SQGLIATQLYWVDRLPIRQNLRCTVKTRYRQQDIACEVIPLN-----DDCVEVRFDEPQI 356
Query: 359 GLAAGQFAAFYQGTRCIGSGVI 380
+ GQ A FYQG C+G GVI
Sbjct: 357 AVTPGQSAVFYQGEECLGGGVI 378
>gi|307728482|ref|YP_003905706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia sp. CCGE1003]
gi|307583017|gb|ADN56415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia sp. CCGE1003]
Length = 385
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 193/368 (52%), Gaps = 16/368 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W +D + C +D +V D
Sbjct: 5 KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D S+ + +
Sbjct: 62 LIGIDVEAVNFASEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V ++ E L + D KDQ+YFL L+QAQL + +FPLG I K +VR
Sbjct: 122 ATGHYARVRENNGRFE-----LLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ F +F+ R++ G ++ G +G+H G FY
Sbjct: 177 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGP-MKTTDGKVVGEHIGLAFY 235
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T GQR+G+ L G PW+V KD+ +N +FV++ + G++ W++G
Sbjct: 236 TFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLFVAQGHDHPWLLSHTLTAGNVSWVAGE 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLM-IEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
PP E K R+ C GE++ + E + GQ A Y G
Sbjct: 296 PPPEGFACGAKTRYRQADARCTFRSASGATTNGEDLFELTFDEAQWAVTPGQSAVLYDGD 355
Query: 373 RCIGSGVI 380
C+G G+I
Sbjct: 356 VCLGGGII 363
>gi|440288000|ref|YP_007340765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacteriaceae bacterium strain FGI 57]
gi|440047522|gb|AGB78580.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacteriaceae bacterium strain FGI 57]
Length = 368
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 205/375 (54%), Gaps = 35/375 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RKDVNGKSQLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + DL +KDS GICF+G+ KF EF+ R++ G I+ + G+ +G+H G +
Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GEDIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGH----DHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMI---EHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P + R K R+ C + E +E V+ E + GQ
Sbjct: 294 WVDREPVQGTFRCTVKTRYRQTDIPCTVTALDEERIE--------VRFDEPVAAVTPGQS 345
Query: 366 AAFYQGTRCIGSGVI 380
A FY G C+G GVI
Sbjct: 346 AVFYNGEVCLGGGVI 360
>gi|83746745|ref|ZP_00943793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia solanacearum UW551]
gi|207744291|ref|YP_002260683.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Ralstonia solanacearum IPO1609]
gi|83726514|gb|EAP73644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia solanacearum UW551]
gi|206595696|emb|CAQ62623.1| probable trna
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Ralstonia solanacearum IPO1609]
Length = 370
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 193/369 (52%), Gaps = 20/369 (5%)
Query: 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
G +V V LSGGVDSSV LL G+ ++K W +D + C +D +V
Sbjct: 3 GKRVVVGLSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
D +DV +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D ++ D
Sbjct: 60 ADLIDVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAD 119
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+A+GHYA+V D ++ L + D KDQ+YFL L+QAQL R +FPLG I K
Sbjct: 120 TIATGHYARV--REVDGRFE---LLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTR 174
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + LPN +KDS GICF+G+ F +F+ R++ G I E G +G+H G
Sbjct: 175 VREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPE-GKTIGQHIGLA 233
Query: 258 FYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
FYT+GQR+G+ + G WYV KD+ N ++V + + L W++
Sbjct: 234 FYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVA 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G PP E + L K R+ C + DG +A +E + GQ A Y G
Sbjct: 294 GHPPAEGTHLAAKTRYRQADAPCT--VAGATDGALALA---FTEAQWAVTPGQSAVLYDG 348
Query: 372 TRCIGSGVI 380
C+G G+I
Sbjct: 349 EVCLGGGII 357
>gi|383813875|ref|ZP_09969298.1| tRNA-specific 2-thiouridylase MnmA [Serratia sp. M24T3]
gi|383297073|gb|EIC85384.1| tRNA-specific 2-thiouridylase MnmA [Serratia sp. M24T3]
Length = 369
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AV D
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDEEY---CSAATDLADAQAVSD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV + ++EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIKLHTINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + S+ S L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVRRKDSNGQ-----SQLLRGLDGNKDQSYFLYTLGSNQIAKSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + +L +KDS GICF+G+ KF +F+ R++ G I + D +G+H G +
Sbjct: 180 RRIAEEQELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIKSVDGQD-MGQHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN+++V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGQKDGGEDPWYVVDKDVANNILYVAQGH----EHPRLMSVGLIAQQLD 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + +QC V+ + +I ++D N V+ + GQ A F
Sbjct: 295 WVDRQPIS--AAVQCVVKTRYRQEDIPCVITPLDD---NRIEVRFESPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQG C+G GVI
Sbjct: 350 YQGEICLGGGVI 361
>gi|313123455|ref|YP_004033714.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280018|gb|ADQ60737.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 375
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 133/380 (35%), Positives = 202/380 (53%), Gaps = 18/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D N C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNW---DDTNDDGVCTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW+ V Y ++EY+ GRTPNPD++CNT IKF +F++
Sbjct: 58 DVKKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+++ DY+A GHYAK + E + + KD KDQTYFLS L+Q Q+KR++FPL
Sbjct: 118 ALDADYLAMGHYAKTMVD----ENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQD 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A + L N +KDS GICF+G+ F F++ + G ++ + G +G
Sbjct: 174 LTKPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPD-GKVVGH 232
Query: 253 HWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD++ N + V + Y S + +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGM 292
Query: 308 KWLSGLPPEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ +G P E+ + K R + C++ + A V E + + GQ
Sbjct: 293 TFFTGNPEEDTEFKATAKFR----YRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQAL 348
Query: 367 AFYQGTRCIGSGVILESWDD 386
Y G C+G G I +++ D
Sbjct: 349 VLYNGEECLGGGNIDDAFKD 368
>gi|390935565|ref|YP_006393070.1| tRNA-specific 2-thiouridylase mnmA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389571066|gb|AFK87471.1| tRNA-specific 2-thiouridylase mnmA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 369
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 141/380 (37%), Positives = 212/380 (55%), Gaps = 27/380 (7%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
+ +KV V +SGGVDSSV+ LL G+ ++K W +ED + C ED +
Sbjct: 5 NRNVKVVVGMSGGVDSSVSALLLKEQGYDVIGIFMKNWDEEDDSGY---CTAAEDYEDVV 61
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
VCD + +P ++ T EYW V Y + EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 62 RVCDTIGIPYYSINFTKEYWDRVFRYFLNEYKSGRTPNPDVMCNKEIKFKAFLEFSMKIG 121
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
DY+A+GHYA++ H+ V DK KDQTYFL L Q QL + +FP+G + K
Sbjct: 122 ADYIATGHYARIEHTDGHYRMLKGV-----DKNKDQTYFLCELGQKQLSKTMFPIGHLDK 176
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + L D+KDS GICF+G+ KF EF+ + + G I + +G LG+H G
Sbjct: 177 LEVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLPAKPGEIRDL-SGRVLGRHDG 235
Query: 256 FWFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SL 307
FYT+GQR+G+ + G PW+VV+KDV+NNV++V++ +K L+ G +
Sbjct: 236 LMFYTLGQRRGIGIGGVGTGEPWFVVDKDVENNVLYVAQG----EKNPALYSYGLFTKDV 291
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W+ G + L+CK + + ++M+ ++G +V + + + GQF
Sbjct: 292 NWIDG--DMDFDELKCKAKFRYRQPDQDVMVFKKDNG----YLVVFDKLQRAVTPGQFVV 345
Query: 368 FYQGTRCIGSGVILESWDDQ 387
FY G C+G GVI + D+
Sbjct: 346 FYDGEYCLGGGVIETIYKDK 365
>gi|340354720|ref|ZP_08677421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Sporosarcina newyorkensis 2681]
gi|339623119|gb|EGQ27625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Sporosarcina newyorkensis 2681]
Length = 372
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 206/377 (54%), Gaps = 33/377 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W D C ED + ++VCD
Sbjct: 11 RVVIGMSGGVDSSVAALLLKEQGYEVIGIFMKNWDDTDESG---HCTATEDFEDVRSVCD 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ D++
Sbjct: 68 QIGIPYYSVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFNAFLEHAKSLGADFL 127
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V+ ++E ++L D KDQTYFL+ L+Q QL++++FPLG + K VR
Sbjct: 128 ATGHYAQVL----EREDGVAMLR-GVDNNKDQTYFLNQLTQEQLQQVMFPLGHLEKSSVR 182
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS GICF+G+ F EF++ ++ + G ++ G +GKH G ++
Sbjct: 183 EIAEKAGLATAKKKDSTGICFIGERNFKEFLSEYLPAIPGE-MQTMDGKVMGKHDGLMYH 241
Query: 260 TIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQR GL + G PW+ V KD++ NV+ V + ++ + + L +
Sbjct: 242 TIGQRHGLGIGGSGEPWFAVGKDLERNVLLVEQGFHH-----------DALYSTSLKATD 290
Query: 318 ISRLQCKVRHGPGFYNCNLMIEH--------VEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
++ C + P ++C + VE GE A+V +E + + GQ Y
Sbjct: 291 MNI--CTTKELPKTFSCTAKFRYRQPDTQVTVELSGEE-AIVTFAEPVRAVTPGQAVVLY 347
Query: 370 QGTRCIGSGVILESWDD 386
G C+G G I E + D
Sbjct: 348 DGEECLGGGTIDEVFKD 364
>gi|319651666|ref|ZP_08005793.1| TrmU protein [Bacillus sp. 2_A_57_CT2]
gi|317396733|gb|EFV77444.1| TrmU protein [Bacillus sp. 2_A_57_CT2]
Length = 371
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/372 (36%), Positives = 203/372 (54%), Gaps = 16/372 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 6 KDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVIR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V +Y +EEY+ GRTPNPDV+CN IKF AF++ S+
Sbjct: 63 VCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMSLGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA+V D EYK + D KDQTYFL+ L+Q QL++++FP+G I K
Sbjct: 123 DYLATGHYARV--EFRDGEYK---MLRGLDDNKDQTYFLNQLTQDQLEKVMFPIGDIEKS 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VR+ A L +KDS GICF+G+ F EF+ ++ G +E G +GKH G
Sbjct: 178 KVRELAKDAGLATAAKKDSTGICFIGERNFKEFLGNYLPAQPGN-METMDGKIVGKHDGL 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
+YTIGQR GL + G PW+ + KD+K NV++V + +++ + W++
Sbjct: 237 MYYTIGQRHGLGIGGAGEPWFAIGKDLKRNVLYVGQGFHNEMLYSDSIIAVNASWVT--H 294
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
E+ +C + + + ++ + DG + V+ E + + GQ FY G C
Sbjct: 295 SEQPQEFECTAKFRYRQADSRVKVQILGDG--KVQVI-FDEPIRAVTPGQAVVFYNGDEC 351
Query: 375 IGSGVILESWDD 386
+G G I + + D
Sbjct: 352 LGGGTIDKIFKD 363
>gi|258539512|ref|YP_003174011.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus Lc 705]
gi|257151188|emb|CAR90160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus Lc 705]
Length = 372
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 195/370 (52%), Gaps = 18/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 7 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVAS 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY+
Sbjct: 64 EIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNADYI 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYA+V D++ +L D KDQTYFLS LSQ QLK+ +FP+G + K EVR
Sbjct: 124 AMGHYAQV---KTDEQGVVHMLR-GADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPEVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS GICF+G+ F +F++ ++ G ++ + G G H G +Y
Sbjct: 180 KIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEKGTHDGLMYY 238
Query: 260 TIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 239 TIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGEA 298
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + + K R+ + + I + +DG A V + + GQ FY G C
Sbjct: 299 PADGTHMTAKFRYRQ--RDTGVTIHYHDDG---TATVDFDVPVRAITPGQAVVFYDGEEC 353
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 354 LGGGTIDAAY 363
>gi|399018736|ref|ZP_10720906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Herbaspirillum sp. CF444]
gi|398100560|gb|EJL90798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Herbaspirillum sp. CF444]
Length = 364
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 143/375 (38%), Positives = 201/375 (53%), Gaps = 32/375 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV + +SGGVDSSV+ LL G+ ++K W +D + C +D A +V D
Sbjct: 5 KVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDAASVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
V V +E V+ EY V + + EY+ GRTPNPDVLCN IKF AF+D + D +
Sbjct: 62 VVGVDIEAVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMLLGADLI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V +E EL K D KDQ+YFL L+QAQL + +FPLG I K E
Sbjct: 122 ATGHYARV------RENPVGKFELMKAVDASKDQSYFLHRLNQAQLSKTLFPLGEIHKTE 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VRK A Q LPN +KDS GICF+G+ F EF+ R++ G + E GD +G+H G
Sbjct: 176 VRKIAEQLKLPNATKKDSTGICFIGERPFREFLNRYLSYKPGPMKTPE-GDIVGEHVGLS 234
Query: 258 FYTIGQRQGLRLPG-----------GPWYVVEKDVKNNVVFVSRNY-YSFDKKRRLFRVG 305
FYT+GQR+G+ L G WYV KDV+NN +++ + + + + RL
Sbjct: 235 FYTLGQRKGIGLGGIKAHQNADGNSDAWYVARKDVENNTLYIVQGHDHPWLLSSRL-GAS 293
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+ W++G P +++ L K R+ C D G ++ S+ + GQ
Sbjct: 294 QISWVAGEAP-DMAALSAKTRYRQADVPCTF-----NDDGARFD-LRFSDPQWAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVI 380
A YQG C+G G+I
Sbjct: 347 AVLYQGDVCLGGGII 361
>gi|325844820|ref|ZP_08168272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Turicibacter sp. HGF1]
gi|325489007|gb|EGC91395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Turicibacter sp. HGF1]
Length = 377
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 137/385 (35%), Positives = 206/385 (53%), Gaps = 23/385 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------C 65
M KG KV V +SGGVDSSVA LL G+ +++ W + C
Sbjct: 1 MSANKGKKVIVGMSGGVDSSVAAYLLKEQGYEVEGVFMRNWDSAANADVLGNPTLNDEVC 60
Query: 66 PWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFG 125
P E D AKAV DQ+ + L V EYW V Y ++EYR GRTPNPD++CN +KF
Sbjct: 61 PQEVDYNDAKAVADQLGIKLHRVDFVQEYWDRVFMYFLDEYRAGRTPNPDIMCNKEVKFK 120
Query: 126 AFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKR 185
AF+D ++ DY+A GHYA+V H Q + D KDQTYFLS L+QAQL +
Sbjct: 121 AFLDYAMNLGCDYIAMGHYARVSHEGEVQMLR------GLDNNKDQTYFLSQLTQAQLSK 174
Query: 186 LIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAE 245
+FP+G + K EVR A + DL +KDS G+CF+G+ F++F+ ++ G + E
Sbjct: 175 TLFPVGELQKSEVRAIAEKLDLATAKKKDSTGVCFIGERNFTQFLQNYLPAQPGQMRTLE 234
Query: 246 TGDFLGKHWGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
G+ +G+H G +YTIGQR+GL + G W+V+ K++K+NV+ V + FD +
Sbjct: 235 -GEVVGEHIGLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQ---GFDHEYVYAD 290
Query: 304 VGSLKWLSGLPPEE-ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
+ ++ +P E + +C + + + + ++D N V++ E + +
Sbjct: 291 EALVSNVNWIPSERFVGTYRCTAKFRYRQPDIPVELTWIDDETLN---VKMLEPVRAVTP 347
Query: 363 GQFAAFYQGTRCIGSGVILESWDDQ 387
GQ A FY C+G G I ++ D+
Sbjct: 348 GQAAVFYLDEVCLGGGRIEVAYKDK 372
>gi|306834574|ref|ZP_07467687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus bovis ATCC 700338]
gi|304423376|gb|EFM26529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus bovis ATCC 700338]
Length = 373
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 1 MSDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNW--DDTDEFGV-CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V S D++ +L D KDQTYFLS LSQ QL++++FPLG
Sbjct: 118 TLGADYVATGHYAQV---SRDEDGIVHMLR-GADNNKDQTYFLSQLSQEQLQKVMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + L +KDS GICF+G+ F EF+++++ +G ++ + D +G+
Sbjct: 174 LEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRD-MGE 232
Query: 253 HWGFWFYTI------GQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTI G PW+VV KD+ N+++V + +Y S
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASS 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E + K R+ + HV+ G+ VV +E + + GQ
Sbjct: 293 IHFTRDMPEEFTMEVTAKFRYRQPDSKVTI---HVK--GDKAEVV-FAEPQRAITPGQAV 346
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 347 VFYDGKECLGGGII 360
>gi|325979485|ref|YP_004289201.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|386338912|ref|YP_006035081.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus subsp. gallolyticus ATCC
43143]
gi|325179413|emb|CBZ49457.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|334281548|dbj|BAK29122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus subsp. gallolyticus ATCC
43143]
Length = 373
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 197/374 (52%), Gaps = 20/374 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 1 MSDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNW--DDTDEFGV-CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V S D++ +L D KDQTYFLS LSQ QL++++FPLG
Sbjct: 118 TLGADYVATGHYAQV---SRDEDGTVHMLR-GADNNKDQTYFLSQLSQEQLQKVMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + L +KDS GICF+G+ F EF+++++ +G ++ + D +G+
Sbjct: 174 LEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRD-MGE 232
Query: 253 HWGFWFYTI------GQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTI G PW+VV KD+ N+++V + +Y S
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASS 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E + K R+ + ++ G+ VV E + + GQ
Sbjct: 293 IHFTRDMPEEFTMEVTAKFRYRQPDSKVTVHVK-----GDKAEVV-FDEPQRAITPGQAV 346
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 347 VFYDGEECLGGGII 360
>gi|422409742|ref|ZP_16486703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL F2-208]
gi|313608681|gb|EFR84517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL F2-208]
Length = 371
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/372 (36%), Positives = 199/372 (53%), Gaps = 24/372 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSV +L G+ ++K W +D + F C ED V
Sbjct: 8 IRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYDDVIRVA 64
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY
Sbjct: 65 NQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
VA+GHYA+V + E V D KDQTYFL+ LSQ QLK+++FPLG + K EV
Sbjct: 125 VATGHYAQVKKVGDEIELLRGV-----DNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETGDFLGKHW 254
R+ A + L ++KDS GICF+G+ F +F++ ++ GEM + G+ LGKH
Sbjct: 180 REIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTL-----NGEVLGKHD 234
Query: 255 GFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
G +YTIGQR GL + G PW V KD+K NV+FV + ++ + + +
Sbjct: 235 GLMYYTIGQRHGLGIGGDGEPWXXVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTN 294
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
E+ ++C + + + + EDG A V ++ + + GQ FY G
Sbjct: 295 --AEKPKTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGD 349
Query: 373 RCIGSGVILESW 384
C G G I W
Sbjct: 350 ICFGGGTIDTVW 361
>gi|336065213|ref|YP_004560072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pasteurianus ATCC 43144]
gi|334283413|dbj|BAK30986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pasteurianus ATCC 43144]
Length = 373
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 198/374 (52%), Gaps = 20/374 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 1 MSDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNW--DDTDEFGV-CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V S D + +L D KDQTYFLS LSQ QL++++FPLG
Sbjct: 118 TLGADYVATGHYAQV---SRDADGTVHMLR-GADNNKDQTYFLSQLSQEQLQKVMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + L +KDS GICF+G+ F EF+++++ +G ++ + D +G+
Sbjct: 174 LEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRD-MGE 232
Query: 253 HWGFWFYTI------GQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTI G PW+VV KD+ N+++V + +Y S
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASS 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E + K R+ + HV+ G+ VV +E + + GQ
Sbjct: 293 IHFTRDMPEEFTMEVTAKFRYRQPDSKVTI---HVK--GDKAEVV-FAEPQRAITPGQAV 346
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 347 VFYDGKECLGGGII 360
>gi|126667269|ref|ZP_01738242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter sp. ELB17]
gi|126628214|gb|EAZ98838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter sp. ELB17]
Length = 374
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/368 (35%), Positives = 192/368 (52%), Gaps = 18/368 (4%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSVA LL G+ ++K W ++D + C D+ A+AV D + +
Sbjct: 1 MSGGVDSSVAAWLLKEQGYQVEGLFMKNWDEDDGTEY---CTAMTDLADAQAVADHIGIK 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
L EYW V + + EY+ GRTPNPD+LCN +KF AF+D ++ DY+A+GHY
Sbjct: 58 LHTASFAAEYWDRVFEHFLSEYKAGRTPNPDILCNKEVKFRAFLDYAITLGADYIATGHY 117
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
+ D + L D KDQ+YFL +S ++ R +FP+G + K EVR+ A
Sbjct: 118 TR--QCPLDDGSGKAQLLKGLDDNKDQSYFLHAVSGDRIARTLFPVGELEKPEVRRIAEA 175
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
L D+KDS GICF+G+ KF++F+ +++ G I E GD +G+H G ++TIGQR
Sbjct: 176 QGLVTHDKKDSTGICFIGERKFTDFLKQYLPAQPGTI-ETPEGDIIGRHQGLMYHTIGQR 234
Query: 265 QGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
QGL + G PWYV EKD+ NV+ ++ R G + W++ P
Sbjct: 235 QGLGIGGLNGYSDEPWYVAEKDLARNVLIAAQGKNHPLLFSRGLVSGPVDWVAAEAPSAK 294
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
R K R+ C + V DGG + + + + GQ A FY G C+G G
Sbjct: 295 FRCMAKTRYRQPDQLCEVT---VIDGGVKVV---FDDAQRAVTPGQSAVFYDGEICLGGG 348
Query: 379 VILESWDD 386
VI +W D
Sbjct: 349 VIEHTWRD 356
>gi|417628187|ref|ZP_12278432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_MHI813]
gi|345376312|gb|EGX08251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_MHI813]
Length = 368
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 209/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+++ +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIEQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|333893389|ref|YP_004467264.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas sp. SN2]
gi|332993407|gb|AEF03462.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas sp. SN2]
Length = 369
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 205/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K A+AV D
Sbjct: 11 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDEY---CLAAEDLKDAQAVAD 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A + DY
Sbjct: 68 KLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGADY 127
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + H Q+ K +L D+ KDQ+YFL L + + + +FP+G I K V
Sbjct: 128 IATGHYVRRRH----QDGKWQLLR-GLDENKDQSYFLYTLGEEHVAKTLFPVGDIEKPLV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + L D+KDS GICF+G+ KF +F+ R++ G+I AE G+ +GKH G +
Sbjct: 183 RKIAEEQGLITHDKKDSTGICFIGERKFKDFLGRYLPAQPGIIETAE-GEEIGKHEGLMY 241
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NV+ V + RL+ G L
Sbjct: 242 HTLGQRKGLHIGGHAKYGEEPWYVVDKDVARNVLIVGQGA----DHPRLYSKGLVAKQLH 297
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ E R K R+ C I + D ++ V E + + GQ A F
Sbjct: 298 WVDRTTITEPMRAVVKTRYRQTDIPC--AIAPIND---DMIEVIFDEPQKAVTPGQSAVF 352
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 353 YLDEVCLGGGII 364
>gi|239828143|ref|YP_002950767.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70]
gi|239808436|gb|ACS25501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. WCH70]
Length = 370
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 146/380 (38%), Positives = 206/380 (54%), Gaps = 38/380 (10%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D N C ED + K
Sbjct: 2 KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNW---DDTNDDGVCTATEDYEDVKR 58
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V +Q+ +P V+ EYW V +Y I+E + GRTPNPDVLCNT IKF AF+D S++
Sbjct: 59 VANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA++ +E L KD KDQTYFLS L+ L +++FP+G ++K+
Sbjct: 119 DYIATGHYARI-----SRENGQIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGELTKD 173
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVRK A + +L N ++KDS GICF+G+ F F+ ++ G I + G+ LG H G
Sbjct: 174 EVRKIAQELNLVNANKKDSTGICFIGERNFKNFLKNYLPAQPGEIRSLD-GEVLGTHDGL 232
Query: 257 WFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+YTIGQR+GL + G PWYVV+KD++NNV+ V++ LF +G
Sbjct: 233 MYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQG----KNHPALFS-------TG 281
Query: 313 LPPEEISRLQCKVRHGPGFYNCNL----------MIEHVEDGGENIAVVQLSEDDQGLAA 362
L IS + VR P + C + H+ G A V+ + + +
Sbjct: 282 LIASNISFINGDVR--PRTFACTAKFRYRQEDQKVTVHIRPNG--TAFVEFEKPVKAVTP 337
Query: 363 GQFAAFYQGTRCIGSGVILE 382
GQ A FY C+GS +I E
Sbjct: 338 GQVAVFYDNDVCLGSAIIDE 357
>gi|432860955|ref|ZP_20086039.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE146]
gi|431406964|gb|ELG90183.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE146]
Length = 368
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WIDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|410636789|ref|ZP_11347380.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola lipolytica E3]
gi|410143595|dbj|GAC14585.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola lipolytica E3]
Length = 374
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 203/370 (54%), Gaps = 25/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL G+ ++K W ++D + + C ED+ A+AV D
Sbjct: 16 KVIVGMSGGVDSSVAAYLLLQQGYQVEGLFMKNWEEDDSDEY---CLAAEDLADAQAVAD 72
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y ++EYR GRTPNPD++CN IKF AF++ A + D+
Sbjct: 73 KLGIELHTINFAAEYWDNVFEYFLDEYRAGRTPNPDIMCNKEIKFKAFLEFAAEDLGADF 132
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
+A+GHY + +EY+ ++ + D KDQ+YFL L + + + +FP+G I K
Sbjct: 133 IATGHYVQ-------REYRDGHWKMLRGLDGNKDQSYFLYTLGEEHIAKTLFPVGNIEKP 185
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR+ A Q +L D+KDS GICF+G+ KF +F+ +++ G+I E G +G H G
Sbjct: 186 EVRRIAEQQNLITHDKKDSTGICFIGERKFKDFLGQYLPAQPGII-ETTDGVEIGHHDGL 244
Query: 257 WFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
F+T+GQR+GL + G PWYVV+KDVK NV+ V + L W+
Sbjct: 245 MFHTLGQRKGLHIGGKREYGDDPWYVVDKDVKRNVLIVGQGANHPALYSDGLIANQLHWV 304
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
P++ R K R+ C + + +DG I V+ + + GQ A FY
Sbjct: 305 DRTGPQQTYRCAVKTRYRQEDIACTVTPQ--QDG--QIKVL-FDSPQKAVTPGQSAVFYY 359
Query: 371 GTRCIGSGVI 380
C+G G+I
Sbjct: 360 QDECLGGGII 369
>gi|296388914|ref|ZP_06878389.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAb1]
gi|313107663|ref|ZP_07793846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas aeruginosa 39016]
gi|386058412|ref|YP_005974934.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa M18]
gi|386066567|ref|YP_005981871.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas aeruginosa NCGM2.S1]
gi|418590606|ref|ZP_13154514.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa
MPAO1/P2]
gi|310880348|gb|EFQ38942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas aeruginosa 39016]
gi|347304718|gb|AEO74832.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa M18]
gi|348035126|dbj|BAK90486.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas aeruginosa NCGM2.S1]
gi|375050563|gb|EHS43043.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa
MPAO1/P2]
Length = 363
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 204/376 (54%), Gaps = 23/376 (6%)
Query: 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82
V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD++
Sbjct: 3 VGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEY---CTAREDLADAQAVCDRIG 59
Query: 83 VPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASG 142
+ L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D + D +A+G
Sbjct: 60 IKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATG 119
Query: 143 HYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFA 202
HY + D++ + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR A
Sbjct: 120 HYVR----RRDRDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRAIA 174
Query: 203 TQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIG 262
+ L +KDS GICF+G+ +F++F+ +++ G I E G +G+H G ++TIG
Sbjct: 175 EKHGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETTEGKVIGRHSGLMYHTIG 233
Query: 263 QRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
QRQGL + G PWYV+ KD++ NV+ V + R + W++ + E
Sbjct: 234 QRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELE 293
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
RL+ KVR+ +C ++E +G + E + + GQ FY G C+G
Sbjct: 294 RPRRLRAKVRYRQSDQDC--VLEKTAEGYRAV----FDEPQRAVTPGQSVVFYDGDVCLG 347
Query: 377 SGVI--LESWDDQGFP 390
GVI E+WD G P
Sbjct: 348 GGVIETAEAWDFGGRP 363
>gi|229552096|ref|ZP_04440821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LMS2-1]
gi|385835159|ref|YP_005872933.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus ATCC 8530]
gi|229314529|gb|EEN80502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LMS2-1]
gi|355394650|gb|AER64080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus ATCC 8530]
Length = 377
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 195/370 (52%), Gaps = 18/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 12 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVAS 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY+
Sbjct: 69 EIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNADYI 128
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYA+V D++ +L D KDQTYFLS LSQ QLK+ +FP+G + K EVR
Sbjct: 129 AMGHYAQV---KTDEQGVVHMLR-GADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPEVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS GICF+G+ F +F++ ++ G ++ + G G H G +Y
Sbjct: 185 KIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEKGTHDGLMYY 243
Query: 260 TIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 244 TIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGEA 303
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + + K R+ + + I + +DG A V + + GQ FY G C
Sbjct: 304 PADGTHMTAKFRYRQ--RDTGVTIHYHDDG---TATVDFDVPVRAITPGQAVVFYDGEEC 358
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 359 LGGGTIDAAY 368
>gi|205374227|ref|ZP_03227026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus coahuilensis m4-4]
Length = 371
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 135/371 (36%), Positives = 202/371 (54%), Gaps = 16/371 (4%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 6 KDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVIR 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V +Q+ +P V+ +YW V +Y ++EY+ GRTPNPDV+CN IKF AF+D +
Sbjct: 63 VANQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHAMKLGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA+V D E K + KD+ KDQTYFL+ LSQ LK+++FP+G + K
Sbjct: 123 DYLATGHYAQV--EERDGEIK---MLRGKDENKDQTYFLNQLSQDVLKKVLFPIGSLDKS 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
VR+ A + L +KDS GICF+G+ F EF+ +++ G +E +G+ G+H G
Sbjct: 178 RVREIAKEAGLATATKKDSTGICFIGERNFKEFLGQYLPAQPGT-METLSGEVKGQHEGL 236
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
++TIGQR GL + G PW+ V KD++ NV+FV + + + W S P
Sbjct: 237 MYHTIGQRHGLGIGGAGEPWFAVGKDLERNVLFVEQGFDHDSLYSTSILATDISWTSDFP 296
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
E+ K R+ + ++ ++ +++ N V E + + GQ FY G C
Sbjct: 297 KEQEFHCTAKFRYRQS--DNSVTVKLLDN---NKVEVIFDEPIRAVTPGQAVVFYDGDVC 351
Query: 375 IGSGVILESWD 385
+G G I E ++
Sbjct: 352 LGGGTIDEIFN 362
>gi|288906423|ref|YP_003431645.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus UCN34]
gi|288733149|emb|CBI14730.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus UCN34]
Length = 373
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 196/374 (52%), Gaps = 20/374 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 1 MSDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNW--DDTDEFGV-CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V S D++ +L D KDQTYFLS LSQ QL++++FPLG
Sbjct: 118 TLGADYVATGHYAQV---SRDEDGTVHMLR-GADNNKDQTYFLSQLSQEQLQKVMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + L +KDS GICF+G+ F EF+++++ +G ++ + D +G+
Sbjct: 174 LEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRD-MGE 232
Query: 253 HWGFWFYTI------GQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTI G PW+VV KD+ N+++V + +Y S
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASS 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E + K R+ + ++ + A V E + + GQ
Sbjct: 293 IHFTRDMPEEFTMEVTAKFRYRQPDSKVTVHVKGAK------AEVVFDEPQRAITPGQAV 346
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 347 VFYDGEECLGGGII 360
>gi|350427594|ref|XP_003494814.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Bombus
impatiens]
Length = 375
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 205/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + + C D+ A+AVCD
Sbjct: 18 KVIVGMSGGVDSSVSAYLLQQQGYQVTGLFMKNWEEDDDQEY---CSAASDLADAQAVCD 74
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+D A + DY
Sbjct: 75 KLGIELLTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLDYAAEDLGADY 134
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + S + + L D KDQ+YFL LS+AQ+ + +FP+G + K +V
Sbjct: 135 IATGHYVRRRDSGSHTQ-----LLRGLDNNKDQSYFLYTLSEAQISKSLFPVGELEKPQV 189
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + L +KDS GICF+G+ KF EF+AR++ G I + G +G+H G +
Sbjct: 190 RKIAAELQLITAQKKDSTGICFIGERKFREFLARYLPAQPGHIRTVD-GHIIGEHQGLMY 248
Query: 259 YTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + P PWYVV+KD+ NN + V++ + LF G L
Sbjct: 249 HTLGQRKGLGIGGLKNTPETPWYVVDKDLINNELIVAQGH----DHPALFSNGLIAQQLH 304
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++ P + R K R+ C I +++ + I V+ + GQ A F
Sbjct: 305 WVNRQPLTQPLRCTVKTRYRQQDIACT--INPIDN--DKIEVL-FDSPVAAVTPGQSAVF 359
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 360 YMDEICLGGGII 371
>gi|388456631|ref|ZP_10138926.1| tRNA-specific 2-thiouridylase MnmA [Fluoribacter dumoffii Tex-KL]
Length = 361
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 201/368 (54%), Gaps = 22/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL AG+ ++K W Q+D + F CP +D+ A+AVC+
Sbjct: 4 KVIVGMSGGVDSSVAAWLLQEAGYQVEGLFMKNWEQDDKDGF---CPAAQDLADAQAVCN 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +PL V+ ++EYW+ V ++ + EY GRTPNPDVLCN IKF AF++ ++ DY+
Sbjct: 61 QLRIPLHTVNFSEEYWQRVFTHFLNEYEQGRTPNPDVLCNKEIKFNAFLNHALTLGADYI 120
Query: 140 ASGHYAK-VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYAK + YK +KD+ KDQTYFL + L + +FP+G +K EV
Sbjct: 121 ATGHYAKNKIKGDVGLLYK------AKDRDKDQTYFLHAVEPKALAKTLFPIGDYTKPEV 174
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+FA++ L + +KDS GICF+G+ +F F+ I G I ++ G LG+H G F
Sbjct: 175 REFASKLGLVTQAKKDSTGICFIGEKRFKSFLQEFILARPGAI-KSTDGKVLGQHDGLMF 233
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + G PWYVV K+V N ++V++ + G + WL+
Sbjct: 234 YTLGQRQGLGIGGLQHSTDDPWYVVNKEVATNTLYVAQGSQHPMLYAQGLICGPIHWLAD 293
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
K R+ C + ++ E V S + + GQ+ FY
Sbjct: 294 CQDSLPLTCYAKTRYRQAEQGCIISPQN-----EQQHYVMFSNPQRAVTPGQYVVFYDKN 348
Query: 373 RCIGSGVI 380
+C+G I
Sbjct: 349 QCLGGATI 356
>gi|421769054|ref|ZP_16205763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LRHMDP2]
gi|421771317|ref|ZP_16207977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LRHMDP3]
gi|411185450|gb|EKS52578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LRHMDP2]
gi|411185903|gb|EKS53029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LRHMDP3]
Length = 377
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 195/370 (52%), Gaps = 18/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 12 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVAS 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY+
Sbjct: 69 EIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNADYI 128
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYA+V D++ +L D KDQTYFLS LSQ QLK+ +FP+G + K EVR
Sbjct: 129 AMGHYAQV---KTDEQGVVHMLR-GADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPEVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS GICF+G+ F +F++ ++ G ++ + G G H G +Y
Sbjct: 185 KIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEKGTHDGLMYY 243
Query: 260 TIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 244 TIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGEA 303
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + + K R+ + + I + +DG A V + + GQ FY G C
Sbjct: 304 PADGTHMTAKFRYRQ--RDTGVTIHYHDDG---TATVDFDVPVRAITPGQAVVFYDGEEC 358
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 359 LGGGTIDAAY 368
>gi|406903124|gb|EKD45302.1| hypothetical protein ACD_69C00352G0003 [uncultured bacterium]
Length = 362
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 201/367 (54%), Gaps = 22/367 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V V LSGGVDS+V LL + G+ A +++ W + +N C +D+ A+ VCD
Sbjct: 9 VIVGLSGGVDSAVTAILLKNQGYHVEAVFMQNW-NDPGDN---GCSVPQDLHDAQVVCDF 64
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+ V L V+ + +YW+ V Y + EY RTPNPDVLCN IKF AF+D S+ D++A
Sbjct: 65 LKVKLHTVNFSTQYWEKVFQYFLNEYAACRTPNPDVLCNKEIKFRAFLDHAKSLGADFIA 124
Query: 141 SGHYA-KVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
+GHYA + H++ + +L DK KDQ+YFL L+Q QL +FP+G ++K++VR
Sbjct: 125 TGHYAQRATHNNKE------LLLKGVDKSKDQSYFLYLLNQEQLAATLFPIGTLTKQKVR 178
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A LPN +KDS GICF+G+ KF F++ ++ G I+ E +G+H G FY
Sbjct: 179 KLAEIAGLPNYAKKDSTGICFIGERKFKNFLSEYLLIRPGDIITTEN-KIVGRHDGLMFY 237
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G PWYV KD KNN + +++N + + W++
Sbjct: 238 TIGQRQGLGIGGQKNSSEAPWYVAIKDQKNNALVITQNKEHPALYAKKLTCDQIHWIADE 297
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PE K+R+ NC + + D E ++ V+ S + GQ FYQ
Sbjct: 298 KPEFPLECTAKIRYRQHDQNC---VVTLTDNREQLS-VEFSTPQWAITPGQSIVFYQDEE 353
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 354 CLGGGII 360
>gi|410453648|ref|ZP_11307594.1| tRNA-specific 2-thiouridylase MnmA [Bacillus bataviensis LMG 21833]
gi|409932945|gb|EKN69897.1| tRNA-specific 2-thiouridylase MnmA [Bacillus bataviensis LMG 21833]
Length = 372
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 207/382 (54%), Gaps = 40/382 (10%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 7 KNTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVIR 63
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+Q+ +P V+ +YW V +Y +EEY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 64 VCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMKLGA 123
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
DY+A+GHYA+V + D EYK + D+ KDQTYFL+ LSQ Q+ +++FP+G + K
Sbjct: 124 DYLATGHYARVEYR--DGEYK---MLRGLDENKDQTYFLNQLSQEQISKVMFPIGNLEKS 178
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VR+ A + L +KDS GICF+G+ F +F+ +++ G +E G+ GKH G
Sbjct: 179 KVREIAMEAGLATATKKDSTGICFIGERNFKDFLGQYLPAQPGN-METFDGEVKGKHEGL 237
Query: 257 WFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG-- 312
++TIGQR GL + G PW+ + KD+K N+++V + ++ ++ W+S
Sbjct: 238 MYHTIGQRHGLGIGGSGEPWFAIGKDLKRNILYVGQGFHHDKLYSDAITAVNVSWVSNHE 297
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQ----------GLAA 362
+P E ++C + ++ ++ V+L EDD+ +
Sbjct: 298 MPVE---------------FDCTAKFRYRQE--DHKVTVRLLEDDKVQVLFHEPIRAITP 340
Query: 363 GQFAAFYQGTRCIGSGVILESW 384
GQ A FY G C+G G I E +
Sbjct: 341 GQAAVFYNGDECLGGGTIDEVY 362
>gi|300811318|ref|ZP_07091815.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497682|gb|EFK32707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 375
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 133/380 (35%), Positives = 201/380 (52%), Gaps = 18/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D N C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNW---DDTNDDGVCTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW+ V Y ++EY+ GRTPNPD++CNT IKF +F++
Sbjct: 58 DVKKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK + E + + KD KDQTYFLS L+Q Q+KR++FPL
Sbjct: 118 DLDADYLAMGHYAKTMVD----ENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQD 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A + L N +KDS GICF+G+ F F++ + G ++ + G +G+
Sbjct: 174 LTKPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPD-GKVVGQ 232
Query: 253 HWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD++ N + V + Y S + +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGM 292
Query: 308 KWLSGLPPEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ +G P E+ + K R + C++ + A V E + + GQ
Sbjct: 293 TFFTGNPEEDTEFKATAKFR----YRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQAL 348
Query: 367 AFYQGTRCIGSGVILESWDD 386
Y G C+G G I ++ D
Sbjct: 349 VLYNGEECLGGGNIDAAFKD 368
>gi|422022979|ref|ZP_16369485.1| tRNA-specific 2-thiouridylase MnmA [Providencia sneebia DSM 19967]
gi|414094709|gb|EKT56373.1| tRNA-specific 2-thiouridylase MnmA [Providencia sneebia DSM 19967]
Length = 367
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + D+
Sbjct: 65 KLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RRDVDGKSQLLR-GLDANKDQSYFLYTLSYEQISKSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF +F+ R++ G I+ + G+ +GKH G +
Sbjct: 180 RRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGDIITVD-GEIIGKHEGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+ N + V++ + + RL G L
Sbjct: 239 HTLGQRKGLGIGGMKEGSDEPWYVVDKDVQTNQLIVAQGH----EHPRLMSTGLIAQQLD 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P E R K R+ C + + DG I V+ E + GQ A F
Sbjct: 295 WVDRNPLTETLRCVVKTRYRQADIPCT--VTPIADG--KIKVI-FDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y C+G GVI
Sbjct: 350 YIDEVCLGGGVI 361
>gi|417137212|ref|ZP_11981002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.0259]
gi|417307596|ref|ZP_12094463.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli PCN033]
gi|432391155|ref|ZP_19634013.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE21]
gi|338770972|gb|EGP25725.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli PCN033]
gi|386158776|gb|EIH15109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.0259]
gi|430921773|gb|ELC42597.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE21]
Length = 368
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|187730842|ref|YP_001879941.1| tRNA-specific 2-thiouridylase MnmA [Shigella boydii CDC 3083-94]
gi|417601555|ref|ZP_12252133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_94C]
gi|419406437|ref|ZP_13947131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC15D]
gi|419412006|ref|ZP_13952669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC15E]
gi|432480557|ref|ZP_19722518.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE210]
gi|205816914|sp|B2TZ86.1|MNMA_SHIB3 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|187427834|gb|ACD07108.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella boydii CDC 3083-94]
gi|345352158|gb|EGW84408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_94C]
gi|378256209|gb|EHY16061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC15D]
gi|378260194|gb|EHY19999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC15E]
gi|431009504|gb|ELD24124.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE210]
Length = 368
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWNNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|323142835|ref|ZP_08077547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Succinatimonas hippei YIT 12066]
gi|322417377|gb|EFY07999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Succinatimonas hippei YIT 12066]
Length = 374
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 135/378 (35%), Positives = 206/378 (54%), Gaps = 24/378 (6%)
Query: 12 SMPHQ--KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE 69
++P++ +G V + LSGGVDSS++ LL G TA ++K W ++D + T C
Sbjct: 6 TIPYKELQGAHVVIGLSGGVDSSLSAALLKENGMKVTALFMKNWEEDDTD---TVCAAAA 62
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D + A+ VCD++ + L+ ++ EYW V + EY+ GRTPNPD+LCN IKF AF D
Sbjct: 63 DREDAQKVCDKLGIELKTINFAAEYWDRVFENFLSEYQAGRTPNPDILCNKEIKFKAFFD 122
Query: 130 -AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
A++ + D++A+GHYA+ S + +L S DK KDQTYFL + L +++F
Sbjct: 123 YALTDLHADFIATGHYAQ---RSFNDPLAAHLLR-SVDKNKDQTYFLHAIGPNVLHKVLF 178
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G I K +VR A + L +KDS GICF+G+ +F EF+ ++ G I+ + G
Sbjct: 179 PVGAIEKPQVRLMAEERGLVTARKKDSTGICFIGEKRFHEFLQHYLPAHSGPIITVD-GQ 237
Query: 249 FLGKHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLF 302
+G+H G F TIGQR+GL + G PWYVV+KD+KNN + +++ + +
Sbjct: 238 TVGEHDGLMFATIGQRKGLHIGGSKDGSGEPWYVVDKDIKNNALIIAQGHNHPALYSKGL 297
Query: 303 RVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
+ WL P + CK+R+ NC + E+ N V +A
Sbjct: 298 MAQNETWLVEAPQMPF-KCTCKIRYRQPDVNCTVYREN------NELKVLFDNKVAAVAP 350
Query: 363 GQFAAFYQGTRCIGSGVI 380
GQ FYQG+ C+G +I
Sbjct: 351 GQSVVFYQGSECLGGAII 368
>gi|254492565|ref|ZP_05105737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylophaga thiooxidans DMS010]
gi|224462457|gb|EEF78734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylophaga thiooxydans DMS010]
Length = 367
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 205/370 (55%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V LSGGVDSSVA LL+ ++K W DF + +EC EED K A +V +
Sbjct: 6 KVVVGLSGGVDSSVAALLLNQQHEQVEGLFMKNWV--DFAD-ESECTVEEDRKDAMSVAE 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
V + + EYW V + ++EYR GRTPNPD+LCN IKF AF+D + +
Sbjct: 63 TVGIDFHEANFAMEYWDYVFKHFLDEYRAGRTPNPDILCNREIKFKAFLDHAMELGGVLI 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V A+++ K +L+ DK KDQ+YFL L Q QL R +FPLG + K EVR
Sbjct: 123 ATGHYARV----AERDGKFHLLKGLDDK-KDQSYFLYTLGQQQLSRTLFPLGELPKTEVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q N D+KDS GICF+G+ F EF++R+I G + G+ +G+H G +Y
Sbjct: 178 QIAEQAGFINHDKKDSTGICFIGERHFREFLSRYIPAQPGE-MRTPDGEKIGEHAGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + G PW+V KD++N +++V + + + + L L W++G
Sbjct: 237 TLGQRQGLGIGGRKNSTGEPWFVAGKDMENRILYVVQGDHPWLWSQNL-TAEQLSWVAGE 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PE R K R+ C + +D G + V+ + + + GQ FYQ
Sbjct: 296 EPEFPCRAAAKTRYRQPDQPCTI---SKDDNG--LIHVEFDDKQRAVTPGQSVVFYQQDD 350
Query: 374 CIGSGVILES 383
C+G G+I+ +
Sbjct: 351 CLGGGIIVST 360
>gi|167580628|ref|ZP_02373502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia thailandensis TXDOH]
Length = 386
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 196/369 (53%), Gaps = 18/369 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + C +D +V D
Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D S+ + +
Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V E L + D KDQ+YFL L+QAQL + +FPLG I K +VR
Sbjct: 122 ATGHYARVRERDGRFE-----LLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ F +F+ R++ G ++ G +G+H G FY
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTQPGP-MKTPDGKTVGEHIGLAFY 235
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T GQR+G+ L G PW+V KD+ +N ++V + + + R G++ W++G
Sbjct: 236 TFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAGE 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVED--GGENIAVVQLSEDDQGLAAGQFAAFYQG 371
PP + +R K R+ C + GGE ++V E + GQ A Y G
Sbjct: 296 PPADGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLV-FDEPQWAVTPGQSAVLYDG 354
Query: 372 TRCIGSGVI 380
C+G G+I
Sbjct: 355 DVCLGGGII 363
>gi|427400356|ref|ZP_18891594.1| tRNA-specific 2-thiouridylase mnmA [Massilia timonae CCUG 45783]
gi|425720630|gb|EKU83549.1| tRNA-specific 2-thiouridylase mnmA [Massilia timonae CCUG 45783]
Length = 370
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 135/373 (36%), Positives = 202/373 (54%), Gaps = 26/373 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV + +SGGVDSSVA +L G+ ++K W +D + C +D A +V D
Sbjct: 5 KVVIGMSGGVDSSVAAWMLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDAASVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
V V +E V+ EY V + + EY+ GRTPNPDVLCN IKF AF+D + D +
Sbjct: 62 VVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMKLGADLI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V ++ +++ L + D KDQ+YFL L+QAQL + +FPLG I K EVR
Sbjct: 122 ATGHYARVRQNTGSGKFE---LLKAFDATKDQSYFLHRLNQAQLSKSLFPLGEIPKTEVR 178
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A + LPN +KDS GICF+G+ F +F+ R++ G I + G +G+H G FY
Sbjct: 179 KIAEKLKLPNAAKKDSTGICFIGERPFRDFLNRYLSYKPGPI-RLDDGTKVGEHVGLSFY 237
Query: 260 TIGQRQGLRLPG-----------GPWYVVEKDVKNNVVFVSRNY-YSFDKKRRLFRVGSL 307
T+GQR+G+ + G PW+V KD++ N +++ + + + + RL G
Sbjct: 238 TLGQRKGIGIGGLKSRKNADGTSEPWFVARKDIEANTLYIVQGHDHPWLLSNRL-EAGQA 296
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++G P L K R+ C ++ E G++ V+ S+ + GQ A
Sbjct: 297 SWIAGEAPAP-RELSAKTRYRQADVACRVLAE-----GDSRFVLDFSDPQWAVTPGQSAV 350
Query: 368 FYQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 351 LYDGDVCLGGGII 363
>gi|416872550|ref|ZP_11916754.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa 152504]
gi|416872691|ref|ZP_11916871.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa 152504]
gi|416872970|ref|ZP_11917113.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa 152504]
gi|418585169|ref|ZP_13149224.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa
MPAO1/P1]
gi|421517138|ref|ZP_15963812.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAO579]
gi|334845455|gb|EGM24017.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa 152504]
gi|334845678|gb|EGM24238.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa 152504]
gi|334845788|gb|EGM24347.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa 152504]
gi|375044898|gb|EHS37490.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa
MPAO1/P1]
gi|404346620|gb|EJZ72969.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAO579]
Length = 359
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 203/374 (54%), Gaps = 23/374 (6%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD++ +
Sbjct: 1 MSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEY---CTAREDLADAQAVCDRIGIK 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D + D +A+GHY
Sbjct: 58 LHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATGHY 117
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
+ D++ + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR A +
Sbjct: 118 VR----RRDRDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRAIAEK 172
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
L +KDS GICF+G+ +F++F+ +++ G I E G +G+H G ++TIGQR
Sbjct: 173 HGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETTEGKVIGRHSGLMYHTIGQR 231
Query: 265 QGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
QGL + G PWYV+ KD++ NV+ V + R + W++ + E
Sbjct: 232 QGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERP 291
Query: 319 SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSG 378
RL+ KVR+ +C ++E +G + E + + GQ FY G C+G G
Sbjct: 292 RRLRAKVRYRQSDQDC--VLEKTAEGYRAV----FDEPQRAVTPGQSVVFYDGDVCLGGG 345
Query: 379 VI--LESWDDQGFP 390
VI E+WD G P
Sbjct: 346 VIETAEAWDFGGRP 359
>gi|81245791|gb|ABB66499.1| conserved hypothetical protein [Shigella boydii Sb227]
Length = 383
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTMRCSVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|38703944|ref|NP_309632.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
Sakai]
gi|161367616|ref|NP_287347.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
EDL933]
gi|168749736|ref|ZP_02774758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4113]
gi|168756472|ref|ZP_02781479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4401]
gi|168762550|ref|ZP_02787557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4501]
gi|168771001|ref|ZP_02796008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4486]
gi|168776054|ref|ZP_02801061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4196]
gi|168782470|ref|ZP_02807477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4076]
gi|168787608|ref|ZP_02812615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC869]
gi|168800455|ref|ZP_02825462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC508]
gi|195938765|ref|ZP_03084147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4024]
gi|208808537|ref|ZP_03250874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4206]
gi|208814775|ref|ZP_03255954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4045]
gi|208822542|ref|ZP_03262861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4042]
gi|209397379|ref|YP_002270050.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
EC4115]
gi|217328487|ref|ZP_03444569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. TW14588]
gi|254792593|ref|YP_003077430.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
TW14359]
gi|261227234|ref|ZP_05941515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. FRIK2000]
gi|261258759|ref|ZP_05951292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. FRIK966]
gi|291282168|ref|YP_003498986.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
contains the PP-loop ATPase domain [Escherichia coli
O55:H7 str. CB9615]
gi|387506277|ref|YP_006158533.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
RM12579]
gi|387882101|ref|YP_006312403.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli Xuzhou21]
gi|416314275|ref|ZP_11658614.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
1044]
gi|416323958|ref|ZP_11665189.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Escherichia coli O157:H7 str. EC1212]
gi|416328792|ref|ZP_11668380.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Escherichia coli O157:H7 str. 1125]
gi|416782309|ref|ZP_11877746.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
G5101]
gi|416793507|ref|ZP_11882668.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str.
493-89]
gi|416804969|ref|ZP_11887520.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str. H
2687]
gi|416815893|ref|ZP_11892231.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
3256-97]
gi|416825710|ref|ZP_11896819.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
USDA 5905]
gi|416836475|ref|ZP_11902090.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
LSU-61]
gi|419044421|ref|ZP_13591387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC3A]
gi|419050285|ref|ZP_13597186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC3B]
gi|419056449|ref|ZP_13603283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC3C]
gi|419061846|ref|ZP_13608606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC3D]
gi|419068514|ref|ZP_13614373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC3E]
gi|419085543|ref|ZP_13630936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC4B]
gi|419091523|ref|ZP_13636835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC4C]
gi|419097527|ref|ZP_13642758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC4D]
gi|419103307|ref|ZP_13648465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC4E]
gi|419108732|ref|ZP_13653825.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC4F]
gi|419119756|ref|ZP_13664734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC5B]
gi|419125614|ref|ZP_13670509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC5C]
gi|419130979|ref|ZP_13675826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC5D]
gi|419135841|ref|ZP_13680646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC5E]
gi|420268769|ref|ZP_14771163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA22]
gi|420274711|ref|ZP_14777028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA40]
gi|420279135|ref|ZP_14781400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW06591]
gi|420285932|ref|ZP_14788141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW10246]
gi|420297390|ref|ZP_14799470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW09109]
gi|420303469|ref|ZP_14805485.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW10119]
gi|420308929|ref|ZP_14810889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1738]
gi|420314434|ref|ZP_14816332.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1734]
gi|421811606|ref|ZP_16247384.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 8.0416]
gi|421817725|ref|ZP_16253269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 10.0821]
gi|421823295|ref|ZP_16258714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK920]
gi|421830080|ref|ZP_16265398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA7]
gi|423684699|ref|ZP_17659533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA31]
gi|424076592|ref|ZP_17813798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FDA505]
gi|424082950|ref|ZP_17819664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FDA517]
gi|424089496|ref|ZP_17825630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK1996]
gi|424095836|ref|ZP_17831430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK1985]
gi|424102200|ref|ZP_17837226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK1990]
gi|424108993|ref|ZP_17843438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 93-001]
gi|424114707|ref|ZP_17848777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA3]
gi|424121035|ref|ZP_17854597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA5]
gi|424127205|ref|ZP_17860298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA9]
gi|424133370|ref|ZP_17866042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA10]
gi|424139973|ref|ZP_17872101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA14]
gi|424146431|ref|ZP_17878028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA15]
gi|424152444|ref|ZP_17883567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA24]
gi|424209933|ref|ZP_17889023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA25]
gi|424292499|ref|ZP_17894921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA28]
gi|424438287|ref|ZP_17900694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA32]
gi|424454920|ref|ZP_17906306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA33]
gi|424461253|ref|ZP_17911997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA39]
gi|424467714|ref|ZP_17917758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA41]
gi|424474261|ref|ZP_17923797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA42]
gi|424480102|ref|ZP_17929249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW07945]
gi|424486211|ref|ZP_17934956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW09098]
gi|424492495|ref|ZP_17940634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW09195]
gi|424499440|ref|ZP_17946589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4203]
gi|424505576|ref|ZP_17952234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4196]
gi|424519429|ref|ZP_17963746.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW14301]
gi|424525340|ref|ZP_17969245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4421]
gi|424531512|ref|ZP_17975035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4422]
gi|424537480|ref|ZP_17980620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4013]
gi|424543445|ref|ZP_17986111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4402]
gi|424549750|ref|ZP_17991817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4439]
gi|424555978|ref|ZP_17997576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4436]
gi|424562318|ref|ZP_18003495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4437]
gi|424568400|ref|ZP_18009178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4448]
gi|424574542|ref|ZP_18014840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1845]
gi|424580445|ref|ZP_18020279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1863]
gi|425097164|ref|ZP_18500082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3.4870]
gi|425103352|ref|ZP_18505862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 5.2239]
gi|425109177|ref|ZP_18511311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 6.0172]
gi|425124934|ref|ZP_18526370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 8.0586]
gi|425130941|ref|ZP_18531942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 8.2524]
gi|425137334|ref|ZP_18537945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 10.0833]
gi|425143153|ref|ZP_18543339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 10.0869]
gi|425149315|ref|ZP_18549109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 88.0221]
gi|425155100|ref|ZP_18554542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA34]
gi|425161622|ref|ZP_18560674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FDA506]
gi|425167188|ref|ZP_18565870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FDA507]
gi|425173280|ref|ZP_18571604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FDA504]
gi|425179299|ref|ZP_18577227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK1999]
gi|425185524|ref|ZP_18583014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK1997]
gi|425198628|ref|ZP_18595137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli NE037]
gi|425205267|ref|ZP_18601278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK2001]
gi|425210968|ref|ZP_18606583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA4]
gi|425217034|ref|ZP_18612216.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA23]
gi|425223624|ref|ZP_18618330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA49]
gi|425229811|ref|ZP_18624085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA45]
gi|425235968|ref|ZP_18629860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TT12B]
gi|425242103|ref|ZP_18635616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MA6]
gi|425248182|ref|ZP_18641261.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 5905]
gi|425253969|ref|ZP_18646710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli CB7326]
gi|425260186|ref|ZP_18652438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC96038]
gi|425266341|ref|ZP_18658133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 5412]
gi|425293836|ref|ZP_18684268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA38]
gi|425310498|ref|ZP_18699857.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1735]
gi|425316427|ref|ZP_18705388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1736]
gi|425322531|ref|ZP_18711074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1737]
gi|425328731|ref|ZP_18716824.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1846]
gi|425334910|ref|ZP_18722506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1847]
gi|425341318|ref|ZP_18728415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1848]
gi|425347178|ref|ZP_18733863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1849]
gi|425353419|ref|ZP_18739678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1850]
gi|425359399|ref|ZP_18745247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1856]
gi|425365539|ref|ZP_18750942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1862]
gi|425371962|ref|ZP_18756800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1864]
gi|425384770|ref|ZP_18768519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1866]
gi|425391470|ref|ZP_18774798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1868]
gi|425397589|ref|ZP_18780499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1869]
gi|425403567|ref|ZP_18786036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1870]
gi|425410106|ref|ZP_18792122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli NE098]
gi|425427576|ref|ZP_18808471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 0.1304]
gi|428946135|ref|ZP_19018645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 88.1467]
gi|428952331|ref|ZP_19024322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 88.1042]
gi|428958114|ref|ZP_19029704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 89.0511]
gi|428964633|ref|ZP_19035657.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 90.0091]
gi|428970656|ref|ZP_19041173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 90.0039]
gi|428976980|ref|ZP_19047058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 90.2281]
gi|428982673|ref|ZP_19052316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 93.0055]
gi|428989129|ref|ZP_19058293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 93.0056]
gi|428994867|ref|ZP_19063681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 94.0618]
gi|429001111|ref|ZP_19069475.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 95.0183]
gi|429007237|ref|ZP_19074990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 95.1288]
gi|429013681|ref|ZP_19080782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 95.0943]
gi|429019606|ref|ZP_19086305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0428]
gi|429025396|ref|ZP_19091711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0427]
gi|429031716|ref|ZP_19097467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0939]
gi|429037859|ref|ZP_19103177.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0932]
gi|429043755|ref|ZP_19108669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0107]
gi|429049534|ref|ZP_19114169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.0003]
gi|429054857|ref|ZP_19119296.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.1742]
gi|429064018|ref|ZP_19127955.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.0007]
gi|429066297|ref|ZP_19130009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0672]
gi|429072562|ref|ZP_19135885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0678]
gi|429077928|ref|ZP_19141118.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0713]
gi|429825456|ref|ZP_19356767.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0109]
gi|429831761|ref|ZP_19362416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.0010]
gi|444924041|ref|ZP_21243587.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 09BKT078844]
gi|444930127|ref|ZP_21249246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0814]
gi|444935376|ref|ZP_21254263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0815]
gi|444941039|ref|ZP_21259644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0816]
gi|444946614|ref|ZP_21264996.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0839]
gi|444952229|ref|ZP_21270406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0848]
gi|444957676|ref|ZP_21275623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1753]
gi|444962929|ref|ZP_21280631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1775]
gi|444968657|ref|ZP_21286100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1793]
gi|444974126|ref|ZP_21291356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1805]
gi|444979301|ref|ZP_21296286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli ATCC 700728]
gi|444984962|ref|ZP_21301800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA11]
gi|444990245|ref|ZP_21306956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA19]
gi|444995452|ref|ZP_21312021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA13]
gi|445001113|ref|ZP_21317552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA2]
gi|445006551|ref|ZP_21322859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA47]
gi|445011642|ref|ZP_21327808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA48]
gi|445017400|ref|ZP_21333422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA8]
gi|445022963|ref|ZP_21338854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 7.1982]
gi|445028132|ref|ZP_21343880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1781]
gi|445033704|ref|ZP_21349296.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1762]
gi|445039406|ref|ZP_21354840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA35]
gi|445050208|ref|ZP_21365338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 95.0083]
gi|445055915|ref|ZP_21370834.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0670]
gi|452967592|ref|ZP_21965819.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
EC4009]
gi|24638314|sp|Q8X735.2|MNMA_ECO57 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|187768490|gb|EDU32334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4196]
gi|188016000|gb|EDU54122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4113]
gi|189000055|gb|EDU69041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4076]
gi|189356337|gb|EDU74756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4401]
gi|189360141|gb|EDU78560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4486]
gi|189367117|gb|EDU85533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4501]
gi|189372405|gb|EDU90821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC869]
gi|189377259|gb|EDU95675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC508]
gi|208728338|gb|EDZ77939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4206]
gi|208731423|gb|EDZ80111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4045]
gi|208738027|gb|EDZ85710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4042]
gi|209158779|gb|ACI36212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. EC4115]
gi|217318914|gb|EEC27340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. TW14588]
gi|254591993|gb|ACT71354.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O157:H7 str. TW14359]
gi|290762041|gb|ADD56002.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Escherichia coli O55:H7 str. CB9615]
gi|320187860|gb|EFW62530.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Escherichia coli O157:H7 str. EC1212]
gi|320637601|gb|EFX07401.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
G5101]
gi|320643161|gb|EFX12362.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str.
493-89]
gi|320648098|gb|EFX16774.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str. H
2687]
gi|320653931|gb|EFX22005.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659411|gb|EFX26980.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
USDA 5905]
gi|320664548|gb|EFX31699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
LSU-61]
gi|326339412|gb|EGD63224.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
1044]
gi|326341465|gb|EGD65256.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Escherichia coli O157:H7 str. 1125]
gi|374358271|gb|AEZ39978.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
RM12579]
gi|377898753|gb|EHU63112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC3A]
gi|377899157|gb|EHU63509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC3B]
gi|377909740|gb|EHU73939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC3C]
gi|377914986|gb|EHU79100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC3D]
gi|377917091|gb|EHU81159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC3E]
gi|377935437|gb|EHU99235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC4B]
gi|377947806|gb|EHV11464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC4C]
gi|377947883|gb|EHV11540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC4D]
gi|377952375|gb|EHV15964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC4E]
gi|377963010|gb|EHV26461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC4F]
gi|377971399|gb|EHV34756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC5B]
gi|377977879|gb|EHV41162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC5C]
gi|377979550|gb|EHV42827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC5D]
gi|377986224|gb|EHV49421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC5E]
gi|386795559|gb|AFJ28593.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli Xuzhou21]
gi|390647952|gb|EIN26774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK1996]
gi|390648530|gb|EIN27223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FDA517]
gi|390649104|gb|EIN27719.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FDA505]
gi|390666815|gb|EIN43903.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 93-001]
gi|390668773|gb|EIN45522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK1985]
gi|390668961|gb|EIN45677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK1990]
gi|390686263|gb|EIN61626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA3]
gi|390688034|gb|EIN63170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA5]
gi|390688300|gb|EIN63380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA9]
gi|390705275|gb|EIN79029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA10]
gi|390706009|gb|EIN79631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA15]
gi|390706804|gb|EIN80308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA14]
gi|390718099|gb|EIN90862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA22]
gi|390730186|gb|EIO02247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA24]
gi|390730482|gb|EIO02497.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA25]
gi|390732170|gb|EIO03902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA28]
gi|390748786|gb|EIO19132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA32]
gi|390748993|gb|EIO19307.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA31]
gi|390750600|gb|EIO20639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA33]
gi|390760412|gb|EIO29741.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA40]
gi|390772936|gb|EIO41421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA41]
gi|390774198|gb|EIO42468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA42]
gi|390774917|gb|EIO43027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA39]
gi|390784845|gb|EIO52401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW06591]
gi|390792792|gb|EIO60140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW10246]
gi|390801549|gb|EIO68602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW07945]
gi|390810165|gb|EIO76935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW09109]
gi|390816507|gb|EIO82991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW09098]
gi|390817779|gb|EIO84194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW10119]
gi|390834050|gb|EIO99021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4203]
gi|390835784|gb|EIP00471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW09195]
gi|390837318|gb|EIP01744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4196]
gi|390853097|gb|EIP16178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW14301]
gi|390855081|gb|EIP17831.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4421]
gi|390867568|gb|EIP29364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4422]
gi|390871665|gb|EIP33054.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4013]
gi|390880304|gb|EIP40992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4402]
gi|390883862|gb|EIP44256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4439]
gi|390888447|gb|EIP48313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4436]
gi|390902450|gb|EIP61546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1738]
gi|390903185|gb|EIP62241.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4437]
gi|390906653|gb|EIP65542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC4448]
gi|390910438|gb|EIP69175.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1734]
gi|390922973|gb|EIP80958.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1863]
gi|390923985|gb|EIP81814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1845]
gi|408069998|gb|EKH04376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA7]
gi|408074144|gb|EKH08433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK920]
gi|408083031|gb|EKH16950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA34]
gi|408085218|gb|EKH18877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FDA506]
gi|408088723|gb|EKH22071.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FDA507]
gi|408099568|gb|EKH32213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FDA504]
gi|408104914|gb|EKH37140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK1999]
gi|408111775|gb|EKH43483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK1997]
gi|408124762|gb|EKH55410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli NE037]
gi|408128177|gb|EKH58560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli FRIK2001]
gi|408134332|gb|EKH64164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA4]
gi|408146864|gb|EKH75923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA23]
gi|408147576|gb|EKH76510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA49]
gi|408151897|gb|EKH80364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA45]
gi|408164298|gb|EKH92111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TT12B]
gi|408167754|gb|EKH95237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MA6]
gi|408168685|gb|EKH96062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 5905]
gi|408183189|gb|EKI09647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli CB7326]
gi|408187315|gb|EKI13285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 5412]
gi|408187732|gb|EKI13659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC96038]
gi|408226557|gb|EKI50193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA38]
gi|408233722|gb|EKI56798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1735]
gi|408245863|gb|EKI68212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1736]
gi|408248663|gb|EKI70671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1737]
gi|408254217|gb|EKI75760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1846]
gi|408264434|gb|EKI85233.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1847]
gi|408266528|gb|EKI87123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1848]
gi|408272572|gb|EKI92652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1849]
gi|408281183|gb|EKJ00615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1850]
gi|408283079|gb|EKJ02307.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1856]
gi|408296827|gb|EKJ15015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1862]
gi|408297424|gb|EKJ15520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1864]
gi|408313521|gb|EKJ30146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1868]
gi|408313569|gb|EKJ30186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1866]
gi|408327863|gb|EKJ43496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1869]
gi|408331503|gb|EKJ46654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli NE098]
gi|408332266|gb|EKJ47326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1870]
gi|408351847|gb|EKJ65548.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 0.1304]
gi|408555256|gb|EKK32073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 5.2239]
gi|408555925|gb|EKK32655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3.4870]
gi|408556051|gb|EKK32751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 6.0172]
gi|408581162|gb|EKK56516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 8.0586]
gi|408585840|gb|EKK60667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 8.2524]
gi|408586068|gb|EKK60852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 10.0833]
gi|408599315|gb|EKK73229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 10.0869]
gi|408603667|gb|EKK77299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 88.0221]
gi|408603940|gb|EKK77543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 8.0416]
gi|408615598|gb|EKK88790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 10.0821]
gi|427211466|gb|EKV81218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 88.1042]
gi|427213051|gb|EKV82528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 88.1467]
gi|427213603|gb|EKV83010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 89.0511]
gi|427231079|gb|EKV99156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 90.0091]
gi|427231243|gb|EKV99299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 90.2281]
gi|427231321|gb|EKV99373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 90.0039]
gi|427248422|gb|EKW15402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 93.0056]
gi|427249840|gb|EKW16588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 93.0055]
gi|427250733|gb|EKW17389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 94.0618]
gi|427267124|gb|EKW32488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 95.0943]
gi|427267259|gb|EKW32590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 95.0183]
gi|427269160|gb|EKW34156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 95.1288]
gi|427284090|gb|EKW48216.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0428]
gi|427288372|gb|EKW52014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0427]
gi|427289059|gb|EKW52651.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0939]
gi|427301088|gb|EKW63979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0932]
gi|427303282|gb|EKW66011.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.0003]
gi|427307071|gb|EKW69556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0107]
gi|427309837|gb|EKW72130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.0007]
gi|427318664|gb|EKW80525.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.1742]
gi|427330960|gb|EKW92209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0672]
gi|427332036|gb|EKW93213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0713]
gi|427332081|gb|EKW93257.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0678]
gi|429257681|gb|EKY41695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0109]
gi|429259080|gb|EKY42826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.0010]
gi|444541250|gb|ELV20797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0814]
gi|444546067|gb|ELV24845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 09BKT078844]
gi|444550128|gb|ELV28259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0815]
gi|444562282|gb|ELV39357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0839]
gi|444564044|gb|ELV41010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0816]
gi|444568203|gb|ELV44894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0848]
gi|444578771|gb|ELV54812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1753]
gi|444582186|gb|ELV57992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1775]
gi|444583949|gb|ELV59629.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1793]
gi|444597458|gb|ELV72452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA11]
gi|444598891|gb|ELV73804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli ATCC 700728]
gi|444602337|gb|ELV77081.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1805]
gi|444611367|gb|ELV85707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA19]
gi|444611411|gb|ELV85747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA13]
gi|444619609|gb|ELV93641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA2]
gi|444629497|gb|ELW03194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA47]
gi|444629699|gb|ELW03382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA48]
gi|444634453|gb|ELW07930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA8]
gi|444644703|gb|ELW17806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 7.1982]
gi|444647151|gb|ELW20132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1781]
gi|444650292|gb|ELW23136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.1762]
gi|444659489|gb|ELW31901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli PA35]
gi|444670558|gb|ELW42444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 95.0083]
gi|444672759|gb|ELW44447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0670]
Length = 368
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|12514787|gb|AAG55959.1|AE005329_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13361069|dbj|BAB35028.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|209772838|gb|ACI84731.1| hypothetical protein ECs1605 [Escherichia coli]
gi|209772840|gb|ACI84732.1| hypothetical protein ECs1605 [Escherichia coli]
gi|209772842|gb|ACI84733.1| hypothetical protein ECs1605 [Escherichia coli]
gi|209772844|gb|ACI84734.1| hypothetical protein ECs1605 [Escherichia coli]
gi|209772846|gb|ACI84735.1| hypothetical protein ECs1605 [Escherichia coli]
Length = 383
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|358636072|dbj|BAL23369.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
[Azoarcus sp. KH32C]
Length = 374
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 196/375 (52%), Gaps = 20/375 (5%)
Query: 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
G+KV V +SGGVDSSV LL G+ T ++K W +D + + C +D+ +V
Sbjct: 9 GMKVVVGMSGGVDSSVTALLLKRQGYQVTGLFMKNWEDDDDDEY---CSTRQDLVDVASV 65
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
CD + + LEVV+ + EY V + + EY GRTPNPD+LCN+ IKF F+D + D
Sbjct: 66 CDVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDILCNSEIKFRCFLDHAMQLGAD 125
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+A+GHYA V D + +L+ ++D KDQ+YFL L+QAQL + +FPLG + K E
Sbjct: 126 KIATGHYAGVREWVNDGRTEYQLLK-AEDGTKDQSYFLYRLTQAQLAKTLFPLGGLYKRE 184
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VRK A L +KDS GICF+G+ F EF+ R++ G I + G LG+H G
Sbjct: 185 VRKIAADAGLHVAAKKDSTGICFIGERPFREFLMRYLPTKPGEIRCLDDGRVLGEHQGLM 244
Query: 258 FYTIGQRQGLRLPG-----------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
++TIGQR+GL + G WYV KDVK NV+ V + + R
Sbjct: 245 YHTIGQRKGLHIGGIKGNQDEAGEHDAWYVAGKDVKANVLHVVQGHDHPALLRSRLTAAD 304
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W++G P K R+ C I+ + DG IA Q L GQ
Sbjct: 305 LNWIAGRDPHTHWVYTAKPRYRTPDMPCE--IDALADGRAEIAFAQPQ---WALTPGQSV 359
Query: 367 AFYQGTRCIGSGVIL 381
Y+ C+G GVI+
Sbjct: 360 VVYESKVCLGGGVIV 374
>gi|194365696|ref|YP_002028306.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia
R551-3]
gi|229487423|sp|B4SIN4.1|MNMA_STRM5 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|194348500|gb|ACF51623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Stenotrophomonas maltophilia R551-3]
Length = 380
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 194/367 (52%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA L G + +++ W ++ EC E+D + A AVC
Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWA----DDGSGECRAEDDRRDAVAVCG 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P ++EYW+ V + + EY GRTPNPDVLCN +KF F+DA + + +
Sbjct: 61 LLGIPFHFRDFSNEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V Q +L D+ KDQ+YFL L Q QL +FP+G + K ++R
Sbjct: 121 ATGHYARVA-----QRGHQWLLLRGADRSKDQSYFLHQLGQQQLAATLFPIGDLEKTDLR 175
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A LP +KDS GICF+G+ F EF+ R++ G IL+ G + +H G +++
Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAEHPGVFYF 235
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+GL + P PWYVV KDV +NV++V ++ S R + W++G
Sbjct: 236 TLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSTWMLSNRLRSETAHWIAGA 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + R+ C +E ++DG +V + + + GQ Y G
Sbjct: 296 PPARRFECTAQTRYRQPDEPCT--VEVLDDGS---VLVTFARPQRAVTPGQSLVLYDGDV 350
Query: 374 CIGSGVI 380
C+G VI
Sbjct: 351 CLGGAVI 357
>gi|161950103|ref|YP_403605.2| tRNA-specific 2-thiouridylase MnmA [Shigella dysenteriae Sd197]
gi|309788203|ref|ZP_07682809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella dysenteriae 1617]
gi|205821961|sp|Q32EZ1.2|MNMA_SHIDS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|308924055|gb|EFP69556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella dysenteriae 1617]
Length = 368
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAKSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL +G L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSIGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|306832460|ref|ZP_07465612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus subsp. gallolyticus TX20005]
gi|304425360|gb|EFM28480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus subsp. gallolyticus TX20005]
Length = 393
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 198/374 (52%), Gaps = 20/374 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 21 MSDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNW--DDTDEFGV-CTATEDYK 77
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 78 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 137
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V S D++ +L D KDQTYFLS LSQ QL++++FPLG
Sbjct: 138 TLGADYVATGHYAQV---SRDEDGTVHMLR-GADNNKDQTYFLSQLSQEQLQKVMFPLGH 193
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + L +KDS GICF+G+ F EF+++++ +G ++ + D +G+
Sbjct: 194 LEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRD-MGE 252
Query: 253 HWGFWFYTI------GQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTI G PW+VV KD+ N+++V + +Y S
Sbjct: 253 HAGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASS 312
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E + K R+ + HV+ G+ VV E + + GQ
Sbjct: 313 IHFTRDMPEEFTMEVTAKFRYRQPDSKVTV---HVK--GDKAEVV-FDEPQRAITPGQAV 366
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 367 VFYDGEECLGGGII 380
>gi|293409499|ref|ZP_06653075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B354]
gi|291469967|gb|EFF12451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B354]
Length = 395
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 34 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 90
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 91 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 150
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 151 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 205
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 206 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 264
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 265 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 320
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 321 WVDREPFTSTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 375
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 376 YNGEVCLGGGII 387
>gi|170682526|ref|YP_001744044.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SMS-3-5]
gi|218549144|ref|YP_002382935.1| tRNA-specific 2-thiouridylase MnmA [Escherichia fergusonii ATCC
35469]
gi|416896629|ref|ZP_11926476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_7v]
gi|417113079|ref|ZP_11964999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 1.2741]
gi|422782045|ref|ZP_16834830.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW10509]
gi|422800547|ref|ZP_16849045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli M863]
gi|422805311|ref|ZP_16853743.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia fergusonii B253]
gi|422828611|ref|ZP_16876781.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli B093]
gi|422833349|ref|ZP_16881416.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli E101]
gi|422971072|ref|ZP_16974584.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli TA124]
gi|424816545|ref|ZP_18241696.1| orf, hypothetical protein [Escherichia fergusonii ECD227]
gi|425304664|ref|ZP_18694426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli N1]
gi|432449580|ref|ZP_19691854.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE193]
gi|432601658|ref|ZP_19837905.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE66]
gi|433032715|ref|ZP_20220481.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE112]
gi|205816880|sp|B1LI10.1|MNMA_ECOSM RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|170520244|gb|ACB18422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli SMS-3-5]
gi|218356685|emb|CAQ89312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia fergusonii ATCC 35469]
gi|323967072|gb|EGB62498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli M863]
gi|323976496|gb|EGB71584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW10509]
gi|324113924|gb|EGC07898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia fergusonii B253]
gi|325497565|gb|EGC95424.1| orf, hypothetical protein [Escherichia fergusonii ECD227]
gi|327253837|gb|EGE65466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_7v]
gi|371598937|gb|EHN87728.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli TA124]
gi|371608099|gb|EHN96662.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli E101]
gi|371612524|gb|EHO01033.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli B093]
gi|386142689|gb|EIG83827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 1.2741]
gi|408230796|gb|EKI54155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli N1]
gi|430981881|gb|ELC98601.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE193]
gi|431142592|gb|ELE44340.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE66]
gi|431557834|gb|ELI31524.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE112]
Length = 368
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|344915250|ref|NP_707062.3| hypothetical protein SF1152 [Shigella flexneri 2a str. 301]
gi|384542781|ref|YP_005726843.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Shigella flexneri 2002017]
gi|24051447|gb|AAN42769.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30040928|gb|AAP16658.1| hypothetical protein S1235 [Shigella flexneri 2a str. 2457T]
gi|281600566|gb|ADA73550.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Shigella flexneri 2002017]
Length = 383
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIKVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|388545181|ref|ZP_10148465.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. M47T1]
gi|388276821|gb|EIK96399.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. M47T1]
Length = 360
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 203/373 (54%), Gaps = 25/373 (6%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSV+ LL G+ ++K W ++D ++ C ED+ A+AVCD++ +
Sbjct: 1 MSGGVDSSVSALLLLEQGYQVEGLFMKNWEEDDGTDY---CTAREDLADAQAVCDRIGIK 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF+D S+ D +A+GHY
Sbjct: 58 LHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLIATGHY 117
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
+ D + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR A +
Sbjct: 118 VR----RRDIHNRTELLK-GLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVRAIAEK 172
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
L +KDS GICF+G+ +FS+F+ +++ G I E G+ +G+H G ++TIGQR
Sbjct: 173 HGLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGEIQTTE-GEVIGRHHGLMYHTIGQR 231
Query: 265 QGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWLSGLPPEE 317
QGL + G PWYV+EKD++ NV+ V + N + + R L + W++ +
Sbjct: 232 QGLGIGGLKDASDEPWYVLEKDLERNVLVVGQGNDHPWLFSRALL-ASEIWWVNPIDLSS 290
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
RL KVR+ G C L E G + E + + GQ FY C+G
Sbjct: 291 PRRLTAKVRYRQGDQGCTL--EQTASGYRAV----FDEPQRAVTPGQSVVFYDDEICLGG 344
Query: 378 GV--ILESWDDQG 388
GV I E W +G
Sbjct: 345 GVIEIAEPWTSKG 357
>gi|293404489|ref|ZP_06648483.1| trmU [Escherichia coli FVEC1412]
gi|298380264|ref|ZP_06989869.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302]
gi|300896838|ref|ZP_07115333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 198-1]
gi|300938705|ref|ZP_07153429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 21-1]
gi|301024581|ref|ZP_07188253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 69-1]
gi|331646392|ref|ZP_08347495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli M605]
gi|387829086|ref|YP_003349023.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Escherichia coli SE15]
gi|281178243|dbj|BAI54573.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Escherichia coli SE15]
gi|291429075|gb|EFF02100.1| trmU [Escherichia coli FVEC1412]
gi|298279962|gb|EFI21470.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302]
gi|300359320|gb|EFJ75190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 198-1]
gi|300396506|gb|EFJ80044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 69-1]
gi|300456350|gb|EFK19843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 21-1]
gi|331045144|gb|EGI17271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli M605]
Length = 383
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|374338990|ref|YP_005095710.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus macedonicus ACA-DC 198]
gi|372285110|emb|CCF03448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus macedonicus ACA-DC 198]
Length = 373
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 198/374 (52%), Gaps = 20/374 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 1 MIDNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNW--DDTDEFGV-CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V S D++ +L D KDQTYFLS LSQ QL++++FPLG
Sbjct: 118 TLGADYVATGHYAQV---SRDEDGTVHMLR-GADNNKDQTYFLSQLSQEQLQKVMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + L +KDS GICF+G+ F +F+++++ +G ++ + D +G+
Sbjct: 174 LEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTVDGRD-MGE 232
Query: 253 HWGFWFYTI------GQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTI G PW+VV KD+ N+++V + +Y S
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASS 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E + K R+ + ++ G+ VV E + + GQ
Sbjct: 293 IHFTRHMPEEFTMEVTAKFRYRQPDSKVTVHVK-----GDKAEVV-FDEPQRAITPGQAV 346
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 347 VFYDGEECLGGGII 360
>gi|77165505|ref|YP_344030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosococcus oceani ATCC 19707]
gi|76883819|gb|ABA58500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosococcus oceani ATCC 19707]
Length = 391
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 200/370 (54%), Gaps = 20/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V LSGGVDSSVA L G+ + ++K W DF + +EC +D + A+AV
Sbjct: 29 KVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWV--DFAD-ESECTVAQDREDAQAVTS 85
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + + EYW V Y +EEYR GRTPNPD+LCN IKF F+D ++ +
Sbjct: 86 LLGISFHEANFAMEYWDRVFHYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNTLI 145
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ DQ+ L +DK KDQ+YFL L Q QL +FPLG + K +VR
Sbjct: 146 ATGHYARI-----DQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 200
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ +F EF++R++ G + + +++G+H G +Y
Sbjct: 201 RIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLPAQPGEMRTPDK-EWIGQHDGLMYY 259
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+GL + G PW+VV K++ N ++V++ + K + L W++G
Sbjct: 260 TLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNTLYVAQGRHHPWLKSLILEANQLHWVAGH 319
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP K+R+ +C L + +G I V+ + GQ FYQ
Sbjct: 320 PPPLPYSCTAKIRYRQTDQHCTLTA--IANG--YIKVI-FNAPQYAATPGQAIVFYQDDE 374
Query: 374 CIGSGVILES 383
C+G G I +
Sbjct: 375 CLGGGTITTT 384
>gi|88798697|ref|ZP_01114280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Reinekea blandensis MED297]
gi|88778460|gb|EAR09652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Reinekea blandensis MED297]
Length = 364
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 131/371 (35%), Positives = 196/371 (52%), Gaps = 19/371 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W ++D + C +ED+ A+AV D
Sbjct: 8 KVIVGMSGGVDSSVTAALLLEQGYQVEGLFMKNWDEDDGTEY---CTAKEDLADAQAVAD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ ++ D +
Sbjct: 65 RLGIHLHKANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYALTLGADKI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ D L D KDQTYFL + Q ++ +FP+G + K +VR
Sbjct: 125 ATGHYART-----DTMNGKGRLLRGNDHNKDQTYFLHAVGHEQFEKTLFPVGELEKPQVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A ++ L +KDS GICF+G+ +FS+F+ +++ G I+ E G+ LG H G +Y
Sbjct: 180 AIAEKYKLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGKIVTLE-GEVLGDHQGLMYY 238
Query: 260 TIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL + G PW+V +K++ N + V + + ++ W+
Sbjct: 239 TIGQRQGLGIGGTRHGEAPWFVAQKNLATNELVVVQGTDHPALFTTYMSLNNIYWVDDTG 298
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
PE L CK R+ +C L + V E + + GQ A FY G C
Sbjct: 299 PELPVTLACKHRYRQPDQSCEL-----SRNAQGEYQVTFHEPQRAITPGQSAVFYLGDVC 353
Query: 375 IGSGVILESWD 385
+G GVI +W+
Sbjct: 354 LGGGVIETTWN 364
>gi|300816836|ref|ZP_07097056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 107-1]
gi|300821083|ref|ZP_07101232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 119-7]
gi|300906948|ref|ZP_07124620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 84-1]
gi|300917906|ref|ZP_07134539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 115-1]
gi|300922663|ref|ZP_07138760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 182-1]
gi|300928309|ref|ZP_07143845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 187-1]
gi|300949484|ref|ZP_07163481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 116-1]
gi|300955539|ref|ZP_07167901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 175-1]
gi|301306077|ref|ZP_07212155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 124-1]
gi|301328492|ref|ZP_07221558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 78-1]
gi|301644551|ref|ZP_07244544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 146-1]
gi|309796520|ref|ZP_07690927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 145-7]
gi|331641677|ref|ZP_08342812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H736]
gi|331652184|ref|ZP_08353203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli M718]
gi|331676926|ref|ZP_08377622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H591]
gi|332279679|ref|ZP_08392092.1| conserved hypothetical protein [Shigella sp. D9]
gi|387620842|ref|YP_006128469.1| trmU [Escherichia coli DH1]
gi|415864542|ref|ZP_11537612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 85-1]
gi|415879244|ref|ZP_11544630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 79-10]
gi|422354510|ref|ZP_16435245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 117-3]
gi|427804292|ref|ZP_18971359.1| hypothetical protein BN16_17021 [Escherichia coli chi7122]
gi|427808873|ref|ZP_18975938.1| hypothetical protein BN17_09961 [Escherichia coli]
gi|300317578|gb|EFJ67362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 175-1]
gi|300401295|gb|EFJ84833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 84-1]
gi|300414896|gb|EFJ98206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 115-1]
gi|300421012|gb|EFK04323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 182-1]
gi|300451104|gb|EFK14724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 116-1]
gi|300463695|gb|EFK27188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 187-1]
gi|300526382|gb|EFK47451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 119-7]
gi|300530610|gb|EFK51672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 107-1]
gi|300838649|gb|EFK66409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 124-1]
gi|300845099|gb|EFK72859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 78-1]
gi|301077133|gb|EFK91939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 146-1]
gi|308119832|gb|EFO57094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 145-7]
gi|315135765|dbj|BAJ42924.1| trmU [Escherichia coli DH1]
gi|315254893|gb|EFU34861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 85-1]
gi|324017533|gb|EGB86752.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 117-3]
gi|331038475|gb|EGI10695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H736]
gi|331050462|gb|EGI22520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli M718]
gi|331075615|gb|EGI46913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H591]
gi|332102031|gb|EGJ05377.1| conserved hypothetical protein [Shigella sp. D9]
gi|342926910|gb|EGU95632.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 79-10]
gi|412962474|emb|CCK46388.1| hypothetical protein BN16_17021 [Escherichia coli chi7122]
gi|412969052|emb|CCJ43679.1| hypothetical protein BN17_09961 [Escherichia coli]
Length = 383
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|319892675|ref|YP_004149550.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus pseudintermedius HKU10-03]
gi|386319116|ref|YP_006015279.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus pseudintermedius ED99]
gi|317162371|gb|ADV05914.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Staphylococcus pseudintermedius HKU10-03]
gi|323464287|gb|ADX76440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus pseudintermedius ED99]
Length = 370
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 205/377 (54%), Gaps = 27/377 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + F C ED AVC+
Sbjct: 7 RVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYNDVIAVCN 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D + DYV
Sbjct: 64 QIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHALKLGADYV 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V H ++ +E+ + D KDQTYFL+ L++AQL +++FP+G I K++
Sbjct: 124 ATGHYARVRH------HEDGSVEMLRGVDNNKDQTYFLNQLTEAQLSKVMFPIGDIDKQK 177
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETGDFLGKH 253
VR+ A + DL +KDS GICF+G+ F F+++++ GEM + G+ G+H
Sbjct: 178 VREIALEQDLATAKKKDSTGICFIGERNFKTFLSQYLPAQPGEMRTL-----NGELKGQH 232
Query: 254 WGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
G +YTIGQR GL + G PW+VV K++++N+++V + ++ + +++
Sbjct: 233 GGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASDVSFVN 292
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
E + K R Y + V G++ V E + + GQ FY G
Sbjct: 293 ATDLTEPLKCTAKFR-----YRQKDVGVTVTAHGDDAVKVTFDEPVRAITPGQAVVFYDG 347
Query: 372 TRCIGSGVILESWDDQG 388
C+G I + + G
Sbjct: 348 DVCLGGATIDDVYKKDG 364
>gi|432893840|ref|ZP_20105852.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE165]
gi|431424820|gb|ELH06916.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE165]
Length = 368
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ AKAVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAKAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|218700344|ref|YP_002407973.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI39]
gi|218704607|ref|YP_002412126.1| tRNA -specific 2-thiouridylase MnmA [Escherichia coli UMN026]
gi|386618709|ref|YP_006138289.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli NA114]
gi|386623611|ref|YP_006143339.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O7:K1 str. CE10]
gi|387606659|ref|YP_006095515.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 042]
gi|417661729|ref|ZP_12311310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli AA86]
gi|419918259|ref|ZP_14436470.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli KD2]
gi|419933740|ref|ZP_14450906.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 576-1]
gi|432353149|ref|ZP_19596426.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE2]
gi|432396987|ref|ZP_19639772.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE25]
gi|432401374|ref|ZP_19644128.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE26]
gi|432405919|ref|ZP_19648639.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE28]
gi|432421224|ref|ZP_19663779.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE178]
gi|432425430|ref|ZP_19667944.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE181]
gi|432460202|ref|ZP_19702358.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE204]
gi|432475294|ref|ZP_19717299.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE208]
gi|432488833|ref|ZP_19730717.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE213]
gi|432499438|ref|ZP_19741208.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE216]
gi|432521807|ref|ZP_19758962.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE228]
gi|432537240|ref|ZP_19774157.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE235]
gi|432542561|ref|ZP_19779416.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE236]
gi|432548036|ref|ZP_19784820.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE237]
gi|432558189|ref|ZP_19794877.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE49]
gi|432621326|ref|ZP_19857366.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE76]
gi|432630746|ref|ZP_19866689.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE80]
gi|432640397|ref|ZP_19876235.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE83]
gi|432665472|ref|ZP_19901056.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE116]
gi|432679607|ref|ZP_19915001.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE143]
gi|432693922|ref|ZP_19929131.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE162]
gi|432710088|ref|ZP_19945152.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE6]
gi|432722614|ref|ZP_19957537.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE17]
gi|432727202|ref|ZP_19962083.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE18]
gi|432740888|ref|ZP_19975609.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE23]
gi|432769979|ref|ZP_20004331.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE50]
gi|432774310|ref|ZP_20008594.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE54]
gi|432792400|ref|ZP_20026488.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE78]
gi|432798361|ref|ZP_20032385.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE79]
gi|432814768|ref|ZP_20048558.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE115]
gi|432838850|ref|ZP_20072339.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE140]
gi|432849583|ref|ZP_20080805.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE144]
gi|432885602|ref|ZP_20100123.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE158]
gi|432911678|ref|ZP_20117953.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE190]
gi|432921231|ref|ZP_20124613.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE173]
gi|432926160|ref|ZP_20127941.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE175]
gi|432960707|ref|ZP_20150827.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE202]
gi|432980576|ref|ZP_20169354.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE211]
gi|432990201|ref|ZP_20178867.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE217]
gi|433018090|ref|ZP_20206347.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE105]
gi|433052505|ref|ZP_20239723.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE122]
gi|433062379|ref|ZP_20249331.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE125]
gi|433067450|ref|ZP_20254268.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE128]
gi|433096001|ref|ZP_20282210.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE139]
gi|433105228|ref|ZP_20291241.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE148]
gi|433110427|ref|ZP_20296298.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE150]
gi|433158101|ref|ZP_20342962.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE177]
gi|433177665|ref|ZP_20362108.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE82]
gi|433202666|ref|ZP_20386461.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE95]
gi|218370330|emb|CAR18133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli IAI39]
gi|218431704|emb|CAR12586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli UMN026]
gi|284920959|emb|CBG34022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 042]
gi|330910947|gb|EGH39457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli AA86]
gi|333969210|gb|AEG36015.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli NA114]
gi|349737349|gb|AEQ12055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O7:K1 str. CE10]
gi|388391880|gb|EIL53320.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli KD2]
gi|388410653|gb|EIL70865.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 576-1]
gi|430876861|gb|ELC00331.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE2]
gi|430917307|gb|ELC38355.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE25]
gi|430927972|gb|ELC48535.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE26]
gi|430932073|gb|ELC52507.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE28]
gi|430946841|gb|ELC66764.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE178]
gi|430958179|gb|ELC76776.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE181]
gi|430990860|gb|ELD07281.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE204]
gi|431007294|gb|ELD22106.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE208]
gi|431023031|gb|ELD36291.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE213]
gi|431031014|gb|ELD43918.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE216]
gi|431043950|gb|ELD54231.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE228]
gi|431072817|gb|ELD80568.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE235]
gi|431076232|gb|ELD83737.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE236]
gi|431082805|gb|ELD89116.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE237]
gi|431093695|gb|ELD99360.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE49]
gi|431161308|gb|ELE61792.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE76]
gi|431172875|gb|ELE72957.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE80]
gi|431183753|gb|ELE83527.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE83]
gi|431203107|gb|ELF01784.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE116]
gi|431223799|gb|ELF21045.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE143]
gi|431235280|gb|ELF30531.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE162]
gi|431250657|gb|ELF44716.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE6]
gi|431267691|gb|ELF59208.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE17]
gi|431274990|gb|ELF66035.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE18]
gi|431285479|gb|ELF76315.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE23]
gi|431317436|gb|ELG05216.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE50]
gi|431319655|gb|ELG07325.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE54]
gi|431340978|gb|ELG27998.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE78]
gi|431344512|gb|ELG31450.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE79]
gi|431366991|gb|ELG53488.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE115]
gi|431391316|gb|ELG74964.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE140]
gi|431401583|gb|ELG84927.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE144]
gi|431418648|gb|ELH01043.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE158]
gi|431439130|gb|ELH20469.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE173]
gi|431443385|gb|ELH24462.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE190]
gi|431446795|gb|ELH27538.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE175]
gi|431477914|gb|ELH57676.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE202]
gi|431493471|gb|ELH73065.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE211]
gi|431497076|gb|ELH76654.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE217]
gi|431535404|gb|ELI11784.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE105]
gi|431574108|gb|ELI46892.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE122]
gi|431585441|gb|ELI57390.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE125]
gi|431588514|gb|ELI59789.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE128]
gi|431618660|gb|ELI87628.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE139]
gi|431630159|gb|ELI98500.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE150]
gi|431632376|gb|ELJ00665.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE148]
gi|431680664|gb|ELJ46487.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE177]
gi|431708256|gb|ELJ72771.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE82]
gi|431724764|gb|ELJ88680.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE95]
Length = 368
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|161984923|ref|YP_408327.2| tRNA-specific 2-thiouridylase MnmA [Shigella boydii Sb227]
gi|417682397|ref|ZP_12331753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella boydii 3594-74]
gi|420352072|ref|ZP_14853231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella boydii 4444-74]
gi|205821943|sp|Q31ZK9.2|MNMA_SHIBS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|332094391|gb|EGI99440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella boydii 3594-74]
gi|391284916|gb|EIQ43504.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella boydii 4444-74]
Length = 368
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCSVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|110805161|ref|YP_688681.1| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 5 str. 8401]
gi|161486505|ref|NP_836851.2| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 2a str.
2457T]
gi|415854350|ref|ZP_11530105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 2a str. 2457T]
gi|417701382|ref|ZP_12350507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri K-218]
gi|417722476|ref|ZP_12371301.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri K-304]
gi|417727804|ref|ZP_12376531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri K-671]
gi|417738148|ref|ZP_12386742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 4343-70]
gi|417742798|ref|ZP_12391340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 2930-71]
gi|418255126|ref|ZP_12879578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 6603-63]
gi|424837607|ref|ZP_18262244.1| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 5a str. M90T]
gi|123342960|sp|Q0T5N9.1|MNMA_SHIF8 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205828969|sp|Q83LF7.2|MNMA_SHIFL RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|110614709|gb|ABF03376.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|313650389|gb|EFS14796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 2a str. 2457T]
gi|332758322|gb|EGJ88645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 4343-70]
gi|332761100|gb|EGJ91387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri K-671]
gi|332767378|gb|EGJ97572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 2930-71]
gi|333005353|gb|EGK24871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri K-218]
gi|333019439|gb|EGK38722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri K-304]
gi|383466659|gb|EID61680.1| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 5a str. M90T]
gi|397899252|gb|EJL15627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 6603-63]
Length = 368
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIKVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|81241404|gb|ABB62114.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 383
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAKSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL +G L
Sbjct: 253 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSIGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|331682639|ref|ZP_08383258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H299]
gi|432616055|ref|ZP_19852179.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE75]
gi|450187646|ref|ZP_21889942.1| trmU [Escherichia coli SEPT362]
gi|331080270|gb|EGI51449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H299]
gi|431155987|gb|ELE56728.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE75]
gi|449323438|gb|EMD13396.1| trmU [Escherichia coli SEPT362]
Length = 368
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YDGEVCLGGGII 360
>gi|410087349|ref|ZP_11284053.1| tRNA-specific 2-thiouridylase MnmA [Morganella morganii SC01]
gi|421494327|ref|ZP_15941677.1| MNMA [Morganella morganii subsp. morganii KT]
gi|455739849|ref|YP_007506115.1| tRNA-specific 2-thiouridylase MnmA [Morganella morganii subsp.
morganii KT]
gi|400191494|gb|EJO24640.1| MNMA [Morganella morganii subsp. morganii KT]
gi|409766084|gb|EKN50180.1| tRNA-specific 2-thiouridylase MnmA [Morganella morganii SC01]
gi|455421412|gb|AGG31742.1| tRNA-specific 2-thiouridylase MnmA [Morganella morganii subsp.
morganii KT]
Length = 367
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVTGLFMKNWEEDDDTEY---CSAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELLTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + + + L D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVRRRDINGTTQ-----LLRGLDSNKDQSYFLYTLSHDQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q L +KDS GICF+G+ KF +F+AR++ G I+ + G +G+H G +
Sbjct: 180 RRIAEQLGLITAKKKDSTGICFIGERKFRDFLARYLPAKPGPIMTVD-GQEIGQHDGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL++ G PWYVV+KDV+NN++ V++ + + RL G L
Sbjct: 239 HTLGQRKGLKIGGTREGSDEPWYVVDKDVENNILIVAQGH----EHPRLMSAGLIAQQLD 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+S P + R K R+ C V G++ V+ + GQ A F
Sbjct: 295 WVSREPLTQPMRCVVKTRYRQEDIPCT-----VTPLGDDKISVRFDNPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQ C+G GVI
Sbjct: 350 YQDEVCLGGGVI 361
>gi|375088389|ref|ZP_09734729.1| tRNA-specific 2-thiouridylase mnmA [Dolosigranulum pigrum ATCC
51524]
gi|374562427|gb|EHR33757.1| tRNA-specific 2-thiouridylase mnmA [Dolosigranulum pigrum ATCC
51524]
Length = 374
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 201/377 (53%), Gaps = 28/377 (7%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSS L G+ ++K W D EN C ED K +AV
Sbjct: 6 IRVVVGMSGGVDSSATALKLKREGYDVVGIFMKNWDDTD-EN--GVCTATEDYKDVQAVA 62
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY
Sbjct: 63 NQIGIPYYSVNFEKEYWNKVFEYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDLGADY 122
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSK-DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
VA+GHYA+V +++ +V L D KDQTYFL+ LSQ QL+R++FPLG + K +
Sbjct: 123 VATGHYARV-----ERDDNGTVHMLRGVDSNKDQTYFLNQLSQDQLQRVMFPLGEMEKPD 177
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETGDFLGKH 253
VR+ A + L D+KDS GICF+G+ F EF+ ++ GEM+ + GD + H
Sbjct: 178 VRQLAEEAGLKTADKKDSTGICFIGERDFKEFLMNYLPAQPGEMQTL-----DGDVVNTH 232
Query: 254 WGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
G +YTIGQRQGL + G PW+V+ KD++ NV+ V + ++
Sbjct: 233 DGLMYYTIGQRQGLGIGGSKEYGNEPWFVIGKDLERNVLLVGQGFHHEHLYATHLEASDF 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ P E R K R+ + + I+ +D E A+V+ E + + GQ
Sbjct: 293 SFTVKAPAEAEFRCTAKFRYRTD--DVPVTIKMNDDRTE--AIVEFDEPQRAITPGQAIV 348
Query: 368 FYQGTRCIGSGVILESW 384
Y G C+G G I ++
Sbjct: 349 LYDGEECLGGGTIDRAY 365
>gi|157693155|ref|YP_001487617.1| tRNA-specific 2-thiouridylase MnmA [Bacillus pumilus SAFR-032]
gi|194017112|ref|ZP_03055724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus pumilus ATCC 7061]
gi|166991121|sp|A8FFP0.1|MNMA_BACP2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|157681913|gb|ABV63057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus pumilus SAFR-032]
gi|194010980|gb|EDW20550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus pumilus ATCC 7061]
Length = 372
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 201/369 (54%), Gaps = 14/369 (3%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA +L G+ ++K W D EN C ED + VC+
Sbjct: 9 RVVVGMSGGVDSSVAALMLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVIRVCN 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY+
Sbjct: 66 QIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHALSLGADYL 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V D+ + D KDQTYFL+ L+Q QL +++FP+G + K+ VR
Sbjct: 126 ATGHYARV-----DRTGDEVKMLRGLDANKDQTYFLNQLTQEQLDKVMFPIGDLEKKRVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L +KDS GICF+G+ F F+++++ GV ++ G+ G+H G +Y
Sbjct: 181 ELAKEAELATATKKDSTGICFIGERNFKTFLSQYLPAQPGV-MQTMDGEVKGEHDGLMYY 239
Query: 260 TIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQRQGL + G PW+VV KD++ N++FV + +++ ++ W E
Sbjct: 240 TIGQRQGLGIGGSGDPWFVVGKDLEQNILFVEQGFHNPLLYSESISAVNISWTRPHIVGE 299
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
L C + Y V+ GE A+V E + + GQ FY G C+G
Sbjct: 300 NGELTCTAKF---RYRQEDHHVKVKMTGEQEAMVIFDEPVRAVTPGQAVVFYDGDECLGG 356
Query: 378 GVILESWDD 386
G I + + D
Sbjct: 357 GTIDDVFKD 365
>gi|114793688|pdb|2DER|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Initial Trna Binding State
gi|114793689|pdb|2DER|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Initial Trna Binding State
gi|114793692|pdb|2DET|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Pre-Reaction State
gi|114793694|pdb|2DEU|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Adenylated Intermediate State
gi|114793695|pdb|2DEU|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
Trna-Glu In The Adenylated Intermediate State
Length = 380
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 19 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 75
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 76 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 135
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 136 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 190
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 191 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 249
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 250 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 305
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 306 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 360
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 361 YNGEVCLGGGII 372
>gi|322833617|ref|YP_004213644.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Rahnella sp. Y9602]
gi|384258796|ref|YP_005402730.1| tRNA-specific 2-thiouridylase MnmA [Rahnella aquatilis HX2]
gi|321168818|gb|ADW74517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Rahnella sp. Y9602]
gi|380754772|gb|AFE59163.1| tRNA-specific 2-thiouridylase MnmA [Rahnella aquatilis HX2]
Length = 369
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 137/376 (36%), Positives = 205/376 (54%), Gaps = 37/376 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDEEY---CTAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + + S L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVRRQDING-----VSHLLRGIDGNKDQSYFLYTLGHEQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF +F+ R++ GVI + G +G+H G +
Sbjct: 180 RRIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGVIKSVD-GQVMGQHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWY VEKDV+NN+++V++ + + RL V G
Sbjct: 239 HTLGQRKGLGIGGQKDGSEEPWYTVEKDVENNILYVAQGH----EHPRLMNV-------G 287
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDG--------GENIAVVQLSEDDQGLAAGQ 364
L +++ + K GP C + + ++ G++ V+ + GQ
Sbjct: 288 LIAQQLHWVDRKTLTGP--LTCTVKTRYRQEDIPCVVTPLGDDRIEVRFDAPVAAVTPGQ 345
Query: 365 FAAFYQGTRCIGSGVI 380
A FY G C+G GVI
Sbjct: 346 SAVFYLGEVCLGGGVI 361
>gi|90111218|ref|NP_415651.4| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli str. K-12 substr. MG1655]
gi|157156703|ref|YP_001462402.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli E24377A]
gi|157160657|ref|YP_001457975.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli HS]
gi|170020474|ref|YP_001725428.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ATCC 8739]
gi|170080784|ref|YP_001730104.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli str. K-12
substr. DH10B]
gi|191168327|ref|ZP_03030119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B7A]
gi|193066260|ref|ZP_03047312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E22]
gi|193071716|ref|ZP_03052616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E110019]
gi|194436948|ref|ZP_03069047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 101-1]
gi|209918390|ref|YP_002292474.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SE11]
gi|218553711|ref|YP_002386624.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI1]
gi|218694667|ref|YP_002402334.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 55989]
gi|238900387|ref|YP_002926183.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli BW2952]
gi|251784662|ref|YP_002998966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli BL21(DE3)]
gi|253773843|ref|YP_003036674.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161240|ref|YP_003044348.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli B str. REL606]
gi|254288048|ref|YP_003053796.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli BL21(DE3)]
gi|260843449|ref|YP_003221227.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Escherichia coli O103:H2 str. 12009]
gi|260854815|ref|YP_003228706.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O26:H11 str.
11368]
gi|260867562|ref|YP_003233964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Escherichia coli O111:H- str. 11128]
gi|293433421|ref|ZP_06661849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B088]
gi|297518453|ref|ZP_06936839.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli OP50]
gi|301029558|ref|ZP_07192636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 196-1]
gi|307310090|ref|ZP_07589740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli W]
gi|331667534|ref|ZP_08368398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TA271]
gi|378713469|ref|YP_005278362.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli KO11FL]
gi|386280244|ref|ZP_10057912.1| tRNA-specific 2-thiouridylase mnmA [Escherichia sp. 4_1_40B]
gi|386596039|ref|YP_006092439.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DH1]
gi|386608493|ref|YP_006123979.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli W]
gi|386613566|ref|YP_006133232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
[Escherichia coli UMNK88]
gi|386701895|ref|YP_006165732.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli KO11FL]
gi|386705145|ref|YP_006168992.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Escherichia coli P12b]
gi|386708942|ref|YP_006172663.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli W]
gi|387611721|ref|YP_006114837.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli ETEC H10407]
gi|388477213|ref|YP_489401.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Escherichia coli str. K-12 substr. W3110]
gi|404374517|ref|ZP_10979729.1| tRNA-specific 2-thiouridylase mnmA [Escherichia sp. 1_1_43]
gi|407468824|ref|YP_006784734.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482509|ref|YP_006779658.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483061|ref|YP_006770607.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415778011|ref|ZP_11489121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3431]
gi|415790888|ref|ZP_11495322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EPECa14]
gi|415819967|ref|ZP_11509264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli OK1180]
gi|415827205|ref|ZP_11514122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli OK1357]
gi|416266591|ref|ZP_11641661.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Shigella dysenteriae CDC 74-1112]
gi|416301327|ref|ZP_11652929.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Shigella flexneri CDC 796-83]
gi|416342638|ref|ZP_11676802.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Escherichia coli EC4100B]
gi|417125869|ref|ZP_11973729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.0246]
gi|417133491|ref|ZP_11978276.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 5.0588]
gi|417143898|ref|ZP_11985860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 1.2264]
gi|417155787|ref|ZP_11993916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0497]
gi|417158776|ref|ZP_11996134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0741]
gi|417172630|ref|ZP_12002663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3.2608]
gi|417180487|ref|ZP_12008195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 93.0624]
gi|417200745|ref|ZP_12017538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 4.0522]
gi|417205590|ref|ZP_12019088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli JB1-95]
gi|417224697|ref|ZP_12027988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.154]
gi|417235863|ref|ZP_12034682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 9.0111]
gi|417250677|ref|ZP_12042452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 4.0967]
gi|417264951|ref|ZP_12052333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 2.3916]
gi|417266704|ref|ZP_12054072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3.3884]
gi|417274972|ref|ZP_12062312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 2.4168]
gi|417278336|ref|ZP_12065651.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3.2303]
gi|417289719|ref|ZP_12077002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B41]
gi|417297646|ref|ZP_12084890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 900105 (10e)]
gi|417580418|ref|ZP_12231234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_B2F1]
gi|417607498|ref|ZP_12258010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_DG131-3]
gi|417612425|ref|ZP_12262893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_EH250]
gi|417617607|ref|ZP_12268035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli G58-1]
gi|417622666|ref|ZP_12272983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_H.1.8]
gi|417633940|ref|ZP_12284156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_S1191]
gi|417638477|ref|ZP_12288642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TX1999]
gi|417666410|ref|ZP_12315965.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_O31]
gi|417804589|ref|ZP_12451592.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O104:H4 str.
LB226692]
gi|417832331|ref|ZP_12478820.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O104:H4 str.
01-09591]
gi|417864939|ref|ZP_12509984.1| hypothetical protein C22711_1871 [Escherichia coli O104:H4 str.
C227-11]
gi|417944680|ref|ZP_12587920.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli XH140A]
gi|417977115|ref|ZP_12617902.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli XH001]
gi|418043327|ref|ZP_12681494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli W26]
gi|418302300|ref|ZP_12914094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli UMNF18]
gi|418943220|ref|ZP_13496432.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H43 str.
T22]
gi|418958534|ref|ZP_13510446.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli J53]
gi|419141778|ref|ZP_13686526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC6A]
gi|419147447|ref|ZP_13692130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC6B]
gi|419153120|ref|ZP_13697701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC6C]
gi|419158526|ref|ZP_13703040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC6D]
gi|419163624|ref|ZP_13708088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC6E]
gi|419169132|ref|ZP_13713526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC7A]
gi|419174493|ref|ZP_13718344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC7B]
gi|419180162|ref|ZP_13723783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC7C]
gi|419185674|ref|ZP_13729196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC7D]
gi|419190942|ref|ZP_13734408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC7E]
gi|419196340|ref|ZP_13739740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC8A]
gi|419202640|ref|ZP_13745848.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC8B]
gi|419208744|ref|ZP_13751851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC8C]
gi|419214970|ref|ZP_13757988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC8D]
gi|419220653|ref|ZP_13763600.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC8E]
gi|419226140|ref|ZP_13769011.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC9A]
gi|419231731|ref|ZP_13774517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC9B]
gi|419237286|ref|ZP_13780020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC9C]
gi|419242677|ref|ZP_13785323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC9D]
gi|419248422|ref|ZP_13791019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC9E]
gi|419254289|ref|ZP_13796817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC10A]
gi|419260419|ref|ZP_13802852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC10B]
gi|419266404|ref|ZP_13808772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC10C]
gi|419271926|ref|ZP_13814236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC10D]
gi|419277420|ref|ZP_13819681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC10E]
gi|419288922|ref|ZP_13831021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC11A]
gi|419294206|ref|ZP_13836256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC11B]
gi|419299596|ref|ZP_13841605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC11C]
gi|419344766|ref|ZP_13886148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC13A]
gi|419349204|ref|ZP_13890557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC13B]
gi|419354364|ref|ZP_13895638.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC13C]
gi|419359591|ref|ZP_13900816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC13D]
gi|419364502|ref|ZP_13905674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC13E]
gi|419369462|ref|ZP_13910588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC14A]
gi|419375003|ref|ZP_13916041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC14B]
gi|419385556|ref|ZP_13926442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC14D]
gi|419804307|ref|ZP_14329467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli AI27]
gi|419810908|ref|ZP_14335786.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O32:H37 str.
P4]
gi|419867376|ref|ZP_14389703.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O103:H25 str.
CVM9340]
gi|419869797|ref|ZP_14391978.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O103:H2 str.
CVM9450]
gi|419876605|ref|ZP_14398319.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H11 str.
CVM9534]
gi|419879627|ref|ZP_14401059.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H11 str.
CVM9545]
gi|419892147|ref|ZP_14412178.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H8 str.
CVM9570]
gi|419894472|ref|ZP_14414379.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H8 str.
CVM9574]
gi|419903245|ref|ZP_14422338.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O26:H11 str.
CVM9942]
gi|419909968|ref|ZP_14428501.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O26:H11 str. CVM10026]
gi|419925451|ref|ZP_14443289.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 541-15]
gi|419928391|ref|ZP_14446104.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 541-1]
gi|419940683|ref|ZP_14457408.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 75]
gi|419951802|ref|ZP_14467984.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli CUMT8]
gi|420091186|ref|ZP_14602941.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H8 str.
CVM9602]
gi|420095325|ref|ZP_14606838.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H8 str.
CVM9634]
gi|420117202|ref|ZP_14626568.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O26:H11 str.
CVM10021]
gi|420120675|ref|ZP_14629862.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O26:H11 str.
CVM10030]
gi|420124790|ref|ZP_14633636.1| trmU [Escherichia coli O26:H11 str. CVM10224]
gi|420135875|ref|ZP_14643947.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O26:H11 str.
CVM9952]
gi|420324851|ref|ZP_14826625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri CCH060]
gi|420380491|ref|ZP_14879956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella dysenteriae 225-75]
gi|420385001|ref|ZP_14884369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EPECa12]
gi|421681877|ref|ZP_16121697.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 1485-80]
gi|421776466|ref|ZP_16213070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli AD30]
gi|422762801|ref|ZP_16816557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E1167]
gi|422765699|ref|ZP_16819426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E1520]
gi|422770365|ref|ZP_16824056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E482]
gi|422785717|ref|ZP_16838456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H489]
gi|422790170|ref|ZP_16842875.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TA007]
gi|422817525|ref|ZP_16865739.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli M919]
gi|422958684|ref|ZP_16970615.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli H494]
gi|422992014|ref|ZP_16982785.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
C227-11]
gi|422993964|ref|ZP_16984728.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
C236-11]
gi|422999143|ref|ZP_16989899.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
09-7901]
gi|423002742|ref|ZP_16993488.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
04-8351]
gi|423009278|ref|ZP_17000016.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-3677]
gi|423023470|ref|ZP_17014173.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4404]
gi|423028618|ref|ZP_17019311.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4522]
gi|423029484|ref|ZP_17020172.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4623]
gi|423037323|ref|ZP_17027997.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423042438|ref|ZP_17033105.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423049129|ref|ZP_17039786.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052710|ref|ZP_17041518.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059678|ref|ZP_17048474.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423701978|ref|ZP_17676437.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli H730]
gi|423709140|ref|ZP_17683518.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli B799]
gi|424748833|ref|ZP_18176960.1| trmU [Escherichia coli O26:H11 str. CFSAN001629]
gi|424765669|ref|ZP_18193055.1| trmU [Escherichia coli O111:H11 str. CFSAN001630]
gi|424771852|ref|ZP_18198976.1| trmU [Escherichia coli O111:H8 str. CFSAN001632]
gi|425114500|ref|ZP_18516318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 8.0566]
gi|425119210|ref|ZP_18520926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 8.0569]
gi|425272136|ref|ZP_18663606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW15901]
gi|425282642|ref|ZP_18673730.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW00353]
gi|425378542|ref|ZP_18762776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1865]
gi|429723527|ref|ZP_19258409.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429723871|ref|ZP_19258746.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429773606|ref|ZP_19305619.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02030]
gi|429776596|ref|ZP_19308576.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02033-1]
gi|429781820|ref|ZP_19313747.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02092]
gi|429787014|ref|ZP_19318905.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02093]
gi|429792193|ref|ZP_19324045.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02281]
gi|429797406|ref|ZP_19329211.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02318]
gi|429802611|ref|ZP_19334372.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02913]
gi|429808982|ref|ZP_19340694.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-03439]
gi|429813034|ref|ZP_19344714.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-04080]
gi|429818240|ref|ZP_19349876.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-03943]
gi|429912068|ref|ZP_19378024.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429917910|ref|ZP_19383850.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922948|ref|ZP_19388869.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429923799|ref|ZP_19389715.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932692|ref|ZP_19398586.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429934295|ref|ZP_19400185.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939957|ref|ZP_19405831.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429947596|ref|ZP_19413451.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429950229|ref|ZP_19416077.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429958502|ref|ZP_19424331.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432369185|ref|ZP_19612285.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE10]
gi|432376292|ref|ZP_19619298.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE12]
gi|432416182|ref|ZP_19658804.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE44]
gi|432484819|ref|ZP_19726738.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE212]
gi|432530464|ref|ZP_19767501.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE233]
gi|432533356|ref|ZP_19770346.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE234]
gi|432563194|ref|ZP_19799812.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE51]
gi|432579833|ref|ZP_19816263.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE56]
gi|432626730|ref|ZP_19862711.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE77]
gi|432636398|ref|ZP_19872280.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE81]
gi|432660353|ref|ZP_19896003.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE111]
gi|432670070|ref|ZP_19905610.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE119]
gi|432684963|ref|ZP_19920271.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE156]
gi|432691053|ref|ZP_19926291.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE161]
gi|432703747|ref|ZP_19938864.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE171]
gi|432736628|ref|ZP_19971398.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE42]
gi|432749608|ref|ZP_19984220.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE29]
gi|432764498|ref|ZP_19998943.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE48]
gi|432805253|ref|ZP_20039194.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE91]
gi|432813308|ref|ZP_20047132.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE101]
gi|432831104|ref|ZP_20064686.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE135]
gi|432834205|ref|ZP_20067747.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE136]
gi|432880854|ref|ZP_20097389.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE154]
gi|432933691|ref|ZP_20133359.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE184]
gi|432946426|ref|ZP_20142055.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE196]
gi|432954424|ref|ZP_20146543.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE197]
gi|432967274|ref|ZP_20156190.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE203]
gi|433042631|ref|ZP_20230150.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE117]
gi|433047275|ref|ZP_20234679.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE120]
gi|433091457|ref|ZP_20277749.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE138]
gi|433129513|ref|ZP_20314975.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE163]
gi|433134311|ref|ZP_20319678.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE166]
gi|433172956|ref|ZP_20357506.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE232]
gi|433193162|ref|ZP_20377170.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE90]
gi|442590694|ref|ZP_21009453.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|442599911|ref|ZP_21017613.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|443617244|ref|YP_007381100.1| trmU [Escherichia coli APEC O78]
gi|450213325|ref|ZP_21894859.1| trmU [Escherichia coli O08]
gi|450241878|ref|ZP_21899712.1| trmU [Escherichia coli S17]
gi|8039808|sp|P25745.4|MNMA_ECOLI RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205816868|sp|A7ZZ88.1|MNMA_ECOHS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205816869|sp|B1XA43.1|MNMA_ECODH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205816870|sp|A7ZKS3.1|MNMA_ECO24 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205816881|sp|B1IUD4.1|MNMA_ECOLC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|4062697|dbj|BAA35955.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Escherichia coli str. K12 substr. W3110]
gi|87081837|gb|AAC74217.2| tRNA(Gln,Lys,Glu) U34 2-thiouridylase, first step in
mnm(5)-s(2)U34-tRNA synthesis [Escherichia coli str.
K-12 substr. MG1655]
gi|157066337|gb|ABV05592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli HS]
gi|157078733|gb|ABV18441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E24377A]
gi|169755402|gb|ACA78101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli ATCC 8739]
gi|169888619|gb|ACB02326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli str. K-12 substr. DH10B]
gi|190901622|gb|EDV61379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B7A]
gi|192926109|gb|EDV80751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E22]
gi|192954978|gb|EDV85481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E110019]
gi|194423931|gb|EDX39919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 101-1]
gi|209911649|dbj|BAG76723.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Escherichia coli SE11]
gi|218351399|emb|CAU97105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 55989]
gi|218360479|emb|CAQ98033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli IAI1]
gi|238863704|gb|ACR65702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli BW2952]
gi|242376935|emb|CAQ31656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli BL21(DE3)]
gi|253324887|gb|ACT29489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253973141|gb|ACT38812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B str. REL606]
gi|253977355|gb|ACT43025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli BL21(DE3)]
gi|257753464|dbj|BAI24966.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Escherichia coli O26:H11 str. 11368]
gi|257758596|dbj|BAI30093.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Escherichia coli O103:H2 str. 12009]
gi|257763918|dbj|BAI35413.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Escherichia coli O111:H- str. 11128]
gi|260449728|gb|ACX40150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DH1]
gi|291324240|gb|EFE63662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B088]
gi|299877553|gb|EFI85764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 196-1]
gi|306909808|gb|EFN40302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli W]
gi|309701457|emb|CBJ00761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli ETEC H10407]
gi|315060410|gb|ADT74737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli W]
gi|315616009|gb|EFU96635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3431]
gi|320175639|gb|EFW50731.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Shigella dysenteriae CDC 74-1112]
gi|320184390|gb|EFW59201.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Shigella flexneri CDC 796-83]
gi|320201029|gb|EFW75613.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Escherichia coli EC4100B]
gi|323153179|gb|EFZ39443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EPECa14]
gi|323179331|gb|EFZ64901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli OK1180]
gi|323185683|gb|EFZ71044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli OK1357]
gi|323379030|gb|ADX51298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli KO11FL]
gi|323937873|gb|EGB34137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E1520]
gi|323942603|gb|EGB38770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E482]
gi|323962732|gb|EGB58310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H489]
gi|323973277|gb|EGB68466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TA007]
gi|324117296|gb|EGC11203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli E1167]
gi|331065119|gb|EGI37014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TA271]
gi|332342735|gb|AEE56069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
[Escherichia coli UMNK88]
gi|339414398|gb|AEJ56070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli UMNF18]
gi|340735106|gb|EGR64195.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O104:H4 str.
01-09591]
gi|340740831|gb|EGR75009.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O104:H4 str.
LB226692]
gi|341918228|gb|EGT67842.1| hypothetical protein C22711_1871 [Escherichia coli O104:H4 str.
C227-11]
gi|342363503|gb|EGU27610.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli XH140A]
gi|344193155|gb|EGV47238.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli XH001]
gi|345342077|gb|EGW74475.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_B2F1]
gi|345361544|gb|EGW93703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_DG131-3]
gi|345364377|gb|EGW96502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_EH250]
gi|345379744|gb|EGX11652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli G58-1]
gi|345383852|gb|EGX13723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_H.1.8]
gi|345389247|gb|EGX19053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_S1191]
gi|345394974|gb|EGX24728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TX1999]
gi|354857247|gb|EHF17703.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
C227-11]
gi|354865039|gb|EHF25468.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
C236-11]
gi|354871818|gb|EHF32215.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
04-8351]
gi|354875320|gb|EHF35686.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
09-7901]
gi|354877568|gb|EHF37927.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4404]
gi|354882392|gb|EHF42716.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4522]
gi|354883100|gb|EHF43422.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-3677]
gi|354899401|gb|EHF59550.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354901224|gb|EHF61352.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4623]
gi|354902878|gb|EHF62991.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354905071|gb|EHF65156.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354916298|gb|EHF76272.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354921461|gb|EHF81386.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-4632 C4]
gi|359331786|dbj|BAL38233.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli str. K-12 substr. MDS42]
gi|371596513|gb|EHN85351.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli H494]
gi|375321476|gb|EHS67309.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H43 str.
T22]
gi|377997434|gb|EHV60538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC6A]
gi|377998466|gb|EHV61557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC6B]
gi|378001807|gb|EHV64864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC6C]
gi|378011455|gb|EHV74398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC6D]
gi|378013197|gb|EHV76117.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC6E]
gi|378018350|gb|EHV81217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC7A]
gi|378026083|gb|EHV88722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC7C]
gi|378033092|gb|EHV95673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC7D]
gi|378036347|gb|EHV98890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC7B]
gi|378041005|gb|EHW03468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC7E]
gi|378050313|gb|EHW12642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC8A]
gi|378053712|gb|EHW16007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC8B]
gi|378057853|gb|EHW20074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC8C]
gi|378065711|gb|EHW27853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC8D]
gi|378070239|gb|EHW32320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC8E]
gi|378077672|gb|EHW39665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC9A]
gi|378080492|gb|EHW42453.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC9B]
gi|378086441|gb|EHW48318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC9C]
gi|378093323|gb|EHW55136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC9D]
gi|378098164|gb|EHW59906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC9E]
gi|378102946|gb|EHW64617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC10A]
gi|378110103|gb|EHW71699.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC10B]
gi|378114581|gb|EHW76133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC10C]
gi|378119793|gb|EHW81281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC10D]
gi|378132589|gb|EHW93941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC10E]
gi|378133355|gb|EHW94700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC11A]
gi|378143759|gb|EHX04944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC11B]
gi|378153979|gb|EHX15056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC11C]
gi|378189194|gb|EHX49788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC13A]
gi|378204866|gb|EHX65282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC13B]
gi|378205837|gb|EHX66245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC13C]
gi|378207050|gb|EHX67452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC13D]
gi|378216323|gb|EHX76610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC13E]
gi|378221137|gb|EHX81388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC14A]
gi|378223105|gb|EHX83335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC14B]
gi|378233835|gb|EHX93918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC14D]
gi|383103313|gb|AFG40822.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Escherichia coli P12b]
gi|383393422|gb|AFH18380.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli KO11FL]
gi|383404634|gb|AFH10877.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli W]
gi|383473745|gb|EID65757.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli W26]
gi|384378748|gb|EIE36627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli J53]
gi|384472736|gb|EIE56787.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli AI27]
gi|385156202|gb|EIF18200.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O32:H37 str.
P4]
gi|385539032|gb|EIF85874.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli M919]
gi|385706847|gb|EIG43885.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli B799]
gi|385711381|gb|EIG48340.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli H730]
gi|386122620|gb|EIG71229.1| tRNA-specific 2-thiouridylase mnmA [Escherichia sp. 4_1_40B]
gi|386145386|gb|EIG91844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 97.0246]
gi|386151345|gb|EIH02634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 5.0588]
gi|386164958|gb|EIH26743.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 1.2264]
gi|386168876|gb|EIH35392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.0497]
gi|386175432|gb|EIH47421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 99.0741]
gi|386180328|gb|EIH57802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3.2608]
gi|386185842|gb|EIH68568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 93.0624]
gi|386187530|gb|EIH76348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 4.0522]
gi|386197847|gb|EIH92041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli JB1-95]
gi|386199745|gb|EIH98736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 96.154]
gi|386214816|gb|EII25224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 9.0111]
gi|386219236|gb|EII35709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 4.0967]
gi|386221511|gb|EII43952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 2.3916]
gi|386231514|gb|EII58862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3.3884]
gi|386233400|gb|EII65385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 2.4168]
gi|386238589|gb|EII75524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3.2303]
gi|386255757|gb|EIJ05445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B41]
gi|386258858|gb|EIJ14335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 900105 (10e)]
gi|388332631|gb|EIK99296.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O103:H25 str.
CVM9340]
gi|388341403|gb|EIL07514.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O103:H2 str.
CVM9450]
gi|388343530|gb|EIL09463.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H11 str.
CVM9534]
gi|388348283|gb|EIL13897.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H8 str.
CVM9570]
gi|388363911|gb|EIL27809.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H8 str.
CVM9574]
gi|388371264|gb|EIL34754.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H11 str.
CVM9545]
gi|388371853|gb|EIL35307.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O26:H11 str.
CVM9942]
gi|388372333|gb|EIL35767.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O26:H11 str. CVM10026]
gi|388386328|gb|EIL47977.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 541-15]
gi|388402354|gb|EIL62927.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 75]
gi|388405672|gb|EIL66095.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 541-1]
gi|388413643|gb|EIL73633.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli CUMT8]
gi|391254964|gb|EIQ14119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri CCH060]
gi|391302194|gb|EIQ60063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella dysenteriae 225-75]
gi|391307494|gb|EIQ65225.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EPECa12]
gi|394384043|gb|EJE61616.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H8 str.
CVM9602]
gi|394393108|gb|EJE69802.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O111:H8 str.
CVM9634]
gi|394396509|gb|EJE72846.1| trmU [Escherichia coli O26:H11 str. CVM10224]
gi|394402371|gb|EJE78094.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O26:H11 str.
CVM10021]
gi|394419251|gb|EJE92865.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O26:H11 str.
CVM9952]
gi|394428581|gb|EJF01112.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O26:H11 str.
CVM10030]
gi|397785874|gb|EJK96717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli STEC_O31]
gi|404292015|gb|EJZ48860.1| tRNA-specific 2-thiouridylase mnmA [Escherichia sp. 1_1_43]
gi|404341086|gb|EJZ67498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 1485-80]
gi|406778223|gb|AFS57647.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407054806|gb|AFS74857.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064859|gb|AFS85906.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408195645|gb|EKI21015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW15901]
gi|408204612|gb|EKI29556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW00353]
gi|408301973|gb|EKJ19523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli EC1865]
gi|408458496|gb|EKJ82283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli AD30]
gi|408571488|gb|EKK47427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 8.0566]
gi|408572446|gb|EKK48355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 8.0569]
gi|421935485|gb|EKT93174.1| trmU [Escherichia coli O111:H11 str. CFSAN001630]
gi|421939742|gb|EKT97256.1| trmU [Escherichia coli O111:H8 str. CFSAN001632]
gi|421943455|gb|EKU00740.1| trmU [Escherichia coli O26:H11 str. CFSAN001629]
gi|429355403|gb|EKY92093.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02030]
gi|429359315|gb|EKY95980.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02092]
gi|429363216|gb|EKY99859.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02033-1]
gi|429373563|gb|EKZ10107.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02093]
gi|429377304|gb|EKZ13828.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02281]
gi|429378908|gb|EKZ15415.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02318]
gi|429388192|gb|EKZ24618.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-03439]
gi|429390055|gb|EKZ26471.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-02913]
gi|429393894|gb|EKZ30281.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-03943]
gi|429395197|gb|EKZ31565.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429403881|gb|EKZ40162.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
11-04080]
gi|429404999|gb|EKZ41266.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429408987|gb|EKZ45221.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429417062|gb|EKZ53213.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429421890|gb|EKZ58011.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429423631|gb|EKZ59739.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429425702|gb|EKZ61791.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429432789|gb|EKZ68826.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429442697|gb|EKZ78653.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429447601|gb|EKZ83519.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429452256|gb|EKZ88142.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429454653|gb|EKZ90512.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430887812|gb|ELC10551.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE10]
gi|430900172|gb|ELC22193.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE12]
gi|430941963|gb|ELC62103.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE44]
gi|431017407|gb|ELD30917.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE212]
gi|431056303|gb|ELD65823.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE233]
gi|431062476|gb|ELD71744.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE234]
gi|431096708|gb|ELE02169.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE51]
gi|431107235|gb|ELE11421.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE56]
gi|431164678|gb|ELE65069.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE77]
gi|431173292|gb|ELE73373.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE81]
gi|431202225|gb|ELF00921.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE111]
gi|431212600|gb|ELF10527.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE119]
gi|431223530|gb|ELF20777.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE156]
gi|431228847|gb|ELF25510.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE161]
gi|431245574|gb|ELF39859.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE171]
gi|431285013|gb|ELF75854.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE42]
gi|431298898|gb|ELF88522.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE29]
gi|431312341|gb|ELG00345.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE48]
gi|431355594|gb|ELG42298.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE101]
gi|431356865|gb|ELG43555.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE91]
gi|431379450|gb|ELG64384.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE135]
gi|431387086|gb|ELG71039.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE136]
gi|431413082|gb|ELG95881.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE154]
gi|431455333|gb|ELH35689.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE184]
gi|431461801|gb|ELH42068.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE196]
gi|431469722|gb|ELH49651.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE197]
gi|431473246|gb|ELH53080.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE203]
gi|431559031|gb|ELI32609.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE117]
gi|431569920|gb|ELI42850.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE120]
gi|431612998|gb|ELI82203.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE138]
gi|431649922|gb|ELJ17261.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE163]
gi|431660623|gb|ELJ27492.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE166]
gi|431695338|gb|ELJ60653.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE232]
gi|431719230|gb|ELJ83290.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE90]
gi|441608962|emb|CCP95366.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|441651128|emb|CCQ03103.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|443421752|gb|AGC86656.1| trmU [Escherichia coli APEC O78]
gi|449321007|gb|EMD11026.1| trmU [Escherichia coli O08]
gi|449323353|gb|EMD13314.1| trmU [Escherichia coli S17]
Length = 368
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|389571975|ref|ZP_10162063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus sp. M 2-6]
gi|388428461|gb|EIL86258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus sp. M 2-6]
Length = 372
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 132/369 (35%), Positives = 202/369 (54%), Gaps = 14/369 (3%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA +L G+ ++K W D EN C ED + VC+
Sbjct: 9 RVVVGMSGGVDSSVAALMLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVIRVCN 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY+
Sbjct: 66 QIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHALSLGADYL 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + + + + D KDQTYFL+ L+Q QL +++FP+G + K+ VR
Sbjct: 126 ATGHYARVDRTGDEVKMLRGL-----DTNKDQTYFLNQLTQEQLDKVLFPIGDLEKKRVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L +KDS GICF+G+ F F+++++ GV ++ G+ G+H G +Y
Sbjct: 181 ELAKEAELATATKKDSTGICFIGERNFKTFLSQYLPAQPGV-MQTMDGEVKGEHDGLMYY 239
Query: 260 TIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQRQGL + G PW+VV KD++ N++FV + +++ ++ W E
Sbjct: 240 TIGQRQGLGIGGSGDPWFVVGKDLEKNILFVEQGFHNPLLYSESISAVNISWTRPHIVGE 299
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
L C + Y V+ GE A+V E + + GQ FY G C+G
Sbjct: 300 NGELTCTAKF---RYRQEDHHVKVKMTGEQEAMVIFDEPVRAVTPGQAVVFYDGEECLGG 356
Query: 378 GVILESWDD 386
G I + + D
Sbjct: 357 GTIDDVFKD 365
>gi|312172139|emb|CBX80396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erwinia amylovora ATCC BAA-2158]
Length = 369
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 203/371 (54%), Gaps = 27/371 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G ++K W +ED E + C ED+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEEDGEEY---CTAAEDLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+ D + K +L D KDQ+YFL LS Q+ + +FP+G ++K EV
Sbjct: 124 IATGHYAR----RQDVDGKSRLLR-GLDGNKDQSYFLYTLSHQQIAQSLFPVGELAKPEV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF+EF+AR++ G I+ + G +G+H G +
Sbjct: 179 RRIAEQLELVTAKKKDSTGICFIGERKFTEFLARYLPAQPGAIISVD-GVNVGQHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + L W+
Sbjct: 238 HTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQLHWVDR 297
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLM---IEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
R K R+ C ++ E +E V+ + GQ A FY
Sbjct: 298 NVLSAPLRCAVKTRYRQEDIPCTVIPLDAERIE--------VRFDYPVAAVTPGQSAVFY 349
Query: 370 QGTRCIGSGVI 380
C+G G+I
Sbjct: 350 LDEVCLGGGII 360
>gi|270291444|ref|ZP_06197666.1| tRNA methyl transferase [Pediococcus acidilactici 7_4]
gi|304385157|ref|ZP_07367503.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus acidilactici DSM 20284]
gi|418069440|ref|ZP_12706718.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
PP-loop ATPase [Pediococcus acidilactici MA18/5M]
gi|270280290|gb|EFA26126.1| tRNA methyl transferase [Pediococcus acidilactici 7_4]
gi|304329351|gb|EFL96571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus acidilactici DSM 20284]
gi|357536909|gb|EHJ20937.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
PP-loop ATPase [Pediococcus acidilactici MA18/5M]
Length = 377
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 199/377 (52%), Gaps = 15/377 (3%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN + C ED K
Sbjct: 1 MTDNSKTRVVVGMSGGVDSSVVAYLLKKQGYDVVGVFMKNWDDTD-ENGY--CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V ++ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAKVAAKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAI 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ DYVA+GHYA+V ++ L + D KDQTYFLS LS QL R++FPLG
Sbjct: 118 SLGADYVATGHYAQVERDENGHQH----LLRATDSNKDQTYFLSQLSAEQLDRVMFPLGG 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR A + L D+KDS GICF+G+ F EF++ ++ G ++ + G+ G+
Sbjct: 174 MVKPEVRAIAKEAGLAVYDKKDSVGICFIGEKNFREFLSNYLPAKPGKMMTLD-GEVKGE 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + GG PW+VV KD+ N+++V + + + +
Sbjct: 233 HAGLMYYTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVGQGFDNPHLYAASLDASDM 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+++ L E +C + + + + +D + V E + + GQ
Sbjct: 293 HFVNRLGEERGHDFRCTAKFRYRAKDVPVTVHFSDDFSK--VTVDFDEPARAITPGQALV 350
Query: 368 FYQGTRCIGSGVILESW 384
Y G CIG G+I ++
Sbjct: 351 LYDGEECIGGGIIDAAY 367
>gi|407980707|ref|ZP_11161484.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. HYC-10]
gi|407412515|gb|EKF34307.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. HYC-10]
Length = 372
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 131/369 (35%), Positives = 202/369 (54%), Gaps = 14/369 (3%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA +L G+ ++K W D EN C ED + VC+
Sbjct: 9 RVVVGMSGGVDSSVAALMLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYEDVIRVCN 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +YW V Y ++EY+ GRTPNPDV+CN IKF AF++ S+ DY+
Sbjct: 66 QIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHALSLGADYL 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ + + + + D KDQTYFL+ L+Q QL +++FP+G + K+ VR
Sbjct: 126 ATGHYARIDRTGDEVKMLRGL-----DANKDQTYFLNQLTQEQLDKVMFPIGDLEKKRVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS GICF+G+ F F+++++ GV ++ G+ G+H G +Y
Sbjct: 181 ELAKEAGLATATKKDSTGICFIGERNFKTFLSQYLPAQPGV-MQTMDGEVKGEHDGLMYY 239
Query: 260 TIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
TIGQRQGL + G PW+VV KD++ N++FV + +++ ++ W +E
Sbjct: 240 TIGQRQGLGIGGSGDPWFVVGKDLEKNILFVEQGFHNPLLYSESISAVNISWTRPHIVDE 299
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
L C + Y V+ GE A+V E + + GQ FY G C+G
Sbjct: 300 NGELTCTAKF---RYRQEDHHVKVKMTGEQEAMVIFDEPVRAVTPGQAVVFYDGEECLGG 356
Query: 378 GVILESWDD 386
G I + + D
Sbjct: 357 GTIDDVFKD 365
>gi|357405934|ref|YP_004917858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylomicrobium alcaliphilum 20Z]
gi|351718599|emb|CCE24270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylomicrobium alcaliphilum 20Z]
Length = 377
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 202/368 (54%), Gaps = 22/368 (5%)
Query: 21 VAVLLSGGVDSSV-ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+ V +SGGVDSSV AL+LL GH T ++K W ++D + C D+ A+ VCD
Sbjct: 5 IIVGMSGGVDSSVTALKLLEE-GHRVTGLFMKNWEEDDGTEY---CTAMADLADAQQVCD 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L+ V+ EYW V + E++ GRTPNPD+LCN +KF AF+D A+ + ++
Sbjct: 61 KLGIELKTVNFAAEYWDEVFEVFLSEFKAGRTPNPDILCNKHVKFKAFLDYALEDLGAEH 120
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+V D E++ L D K+Q+YFL + Q L + +FP+G + K E+
Sbjct: 121 IATGHYARV--REQDGEFQ---LLKGLDPNKEQSYFLYAMGQKALSKTLFPIGHLHKPEI 175
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A + N +KDS GICF+G+ KF +F+ R++ G + G ++G+H G +
Sbjct: 176 RAIAEKAGFANSRKKDSTGICFIGERKFKDFLQRYLPAQPGE-MRTPKGQYIGRHHGLMY 234
Query: 259 YTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + P PW+V++KD+ NNV+ V + + G L W
Sbjct: 235 YTMGQRQGLGIGGVKNAPDEPWFVLDKDLDNNVLIVGQGHEHPLMMHTTLEAGQLDWCGN 294
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
E R K R+ +C ++E ++DG N V+ + + + GQ FY G
Sbjct: 295 TGLTETLRCAAKTRYRQPDQDC--VVEPLDDG--NRVTVRFDQPQRAITPGQSVVFYDGE 350
Query: 373 RCIGSGVI 380
C+G G+I
Sbjct: 351 VCLGGGII 358
>gi|417716599|ref|ZP_12365527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri K-227]
gi|333019852|gb|EGK39124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri K-227]
Length = 368
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFKLFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIKVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|395239323|ref|ZP_10417203.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus gigeriorum CRBIP
24.85]
gi|394476418|emb|CCI87180.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus gigeriorum CRBIP
24.85]
Length = 375
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 197/377 (52%), Gaps = 16/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSVA LL + G+ ++K W D C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVAALLLKNQGYDVIGVFMKNWDDTDDSGV---CTATEDFE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW V Y ++EY+ GRTPNPD++CN+ IKF +F++
Sbjct: 58 DVKKVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDIMCNSEIKFKSFLEFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK V + + + KD KDQTYFLS LSQ Q+K++IFPL
Sbjct: 118 DLDADYIAMGHYAKTVTDANGITH----MMRPKDGNKDQTYFLSQLSQDQIKKVIFPLAD 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K +VR+ A L +KDS GICF+G+ F +F++ + G ++ A+ G +G+
Sbjct: 174 LTKPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTAD-GTVVGE 232
Query: 253 HWGFWFYTIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR GL L PW+VV KD+ N + V + Y S +
Sbjct: 233 HAGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLDKNELIVEQGYDSPLLYADRLTASDM 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +G P E++ C + + C+L + N A V E + + GQ
Sbjct: 293 SFFTGRPKEDV-EFHCTAKF--RYRQCDLGVTVQYHADSNTADVYFDEPARAITPGQALV 349
Query: 368 FYQGTRCIGSGVILESW 384
Y G C+G G I ++
Sbjct: 350 LYDGDECLGGGNIDAAY 366
>gi|397168199|ref|ZP_10491637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter radicincitans DSM 16656]
gi|396089734|gb|EJI87306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Enterobacter radicincitans DSM 16656]
Length = 368
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 208/375 (55%), Gaps = 35/375 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + L +KDS GICF+G+ KF EF+ R++ G IL + G+ +G+H G +
Sbjct: 179 RKIAEELGLATAKKKDSTGICFIGERKFREFLGRYLPAQPGKILTVD-GEEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMI---EHVEDGGENIAVVQLSEDDQGLAAGQF 365
W++ P + R K R+ C + + E +E V+ + GQ
Sbjct: 294 WVNREPLQGTLRCTVKTRYRQEDIPCTVTVLDDERIE--------VRFDAPVAAVTPGQS 345
Query: 366 AAFYQGTRCIGSGVI 380
A FY G C+G G+I
Sbjct: 346 AVFYLGEVCLGGGII 360
>gi|199598161|ref|ZP_03211583.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, PP-loop ATPase [Lactobacillus
rhamnosus HN001]
gi|199590922|gb|EDY99006.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, PP-loop ATPase [Lactobacillus
rhamnosus HN001]
Length = 377
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 195/370 (52%), Gaps = 18/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 12 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVAS 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY+
Sbjct: 69 EIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNADYI 128
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYA+V D++ +L D KDQTYFLS LSQ QLK+ +FP+G + K EVR
Sbjct: 129 AMGHYAQV---KTDEQGVVHMLR-GADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPEVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS GICF+G+ F +F++ ++ G ++ + G G H G +Y
Sbjct: 185 KIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEKGTHDGLMYY 243
Query: 260 TIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 244 TIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGEA 303
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + + K R+ + + I + +DG A V + + GQ FY G C
Sbjct: 304 PVDGTHMTAKFRYRQ--RDTGVTIHYHDDG---TATVDFDVPVRAITPGQAVVFYDGEEC 358
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 359 LGGGTIDAAY 368
>gi|170722583|ref|YP_001750271.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida W619]
gi|205816891|sp|B1JBJ1.1|MNMA_PSEPW RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|169760586|gb|ACA73902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas putida W619]
Length = 374
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/376 (36%), Positives = 202/376 (53%), Gaps = 29/376 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 13 RVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTEY---CTAREDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF+D S+ D +
Sbjct: 70 RIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHY + + A V EL K D KDQ+YFL + ++ R +FP+G + K E
Sbjct: 130 ATGHYVRRRDTGA-------VTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGELEKPE 182
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR A + L +KDS GICF+G+ +FS+F+ +++ G I E G+ +G+H G
Sbjct: 183 VRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGEIQTTE-GEVIGRHHGLM 241
Query: 258 FYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWL 310
++TIGQRQGL + G PWYV+ KD+ NV+ V + N + + R L + W+
Sbjct: 242 YHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVGQGNEHPWLFSRALL-ASEIFWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+ + L KVR+ C L + E G + E + + GQ FY
Sbjct: 301 NPIDLSSPRTLTAKVRYRQSDQRCTLAL--TESGYRAV----FDEPQRAVTPGQSVVFYD 354
Query: 371 GTRCIGSGVI--LESW 384
G C+G GVI E W
Sbjct: 355 GEVCLGGGVIETAEPW 370
>gi|188494195|ref|ZP_03001465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 53638]
gi|188489394|gb|EDU64497.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 53638]
Length = 368
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YDGEVCLGGGII 360
>gi|423389292|ref|ZP_17366518.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1X1-3]
gi|401641383|gb|EJS59100.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1X1-3]
Length = 371
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 207/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 4 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 59 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 119 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQGQLSKTMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 174 LKKPQIREMATAAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 232
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 233 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E + K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 293 SNKAKETEFKCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 347
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 348 GDECLGGATIDEVY 361
>gi|418575983|ref|ZP_13140130.1| putative tRNA methyltransferase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|418576009|ref|ZP_13140155.1| putative tRNA methyltransferase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325071|gb|EHY92203.1| putative tRNA methyltransferase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325731|gb|EHY92862.1| putative tRNA methyltransferase [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 370
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 201/377 (53%), Gaps = 19/377 (5%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
K +V V +SGGVDSSV +L G+ ++K W D F C ED
Sbjct: 3 NKDTRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDENGF---CTATEDYNDVI 59
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
AVC+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 60 AVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLG 119
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
DYVA+GHYA+V + ++ +E+ + D KDQTYFL+ LSQ+QL R++FP+G I
Sbjct: 120 ADYVATGHYARV------RRHEDGHVEMLRGVDNNKDQTYFLNQLSQSQLSRVMFPIGDI 173
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K+EVR+ A + DL +KDS GICF+G+ F EF+++++ G + G +G H
Sbjct: 174 EKKEVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGE-MRTLKGKKIGTH 232
Query: 254 WGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
G +YTIGQR GL + G PW+VV K++ +N+++V + ++ + +++
Sbjct: 233 AGLMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNILYVEQGFHHDALYSDYLIASDISFVN 292
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
+ E K R Y V+ EN V +E + + GQ Y G
Sbjct: 293 DVNLENGFECTAKFR-----YRQKDTKVFVKKENENAIRVIFNEPVRAITPGQSVVLYDG 347
Query: 372 TRCIGSGVILESWDDQG 388
C+G I + + + G
Sbjct: 348 DVCLGGATIDDVYKESG 364
>gi|331701087|ref|YP_004398046.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL
B-30929]
gi|329128430|gb|AEB72983.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL
B-30929]
Length = 374
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 200/377 (53%), Gaps = 17/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MQDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V +++ +P V+ EYW V +Y ++EY+ GRTP+PDV+CN IKF AF+D
Sbjct: 58 DVAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ + + L + D KDQTYFLS LS QL R++FP+G
Sbjct: 118 ELGADYIATGHYAQLTRDADGHNH----LLRASDGNKDQTYFLSQLSADQLDRVMFPIGN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K +VRK A + L D+KDS GICF+G+ F F+ ++ G ++ + G+ G+
Sbjct: 174 LVKPDVRKIAREAGLATADKKDSVGICFIGEKNFKNFLGHYLPATPGKMMTVD-GEVKGQ 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + G PW+VV KD+K N+++V + Y++ +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKQNILYVGKGYHNPLLYADYLEASDI 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ L + K R+ + H+ D G+++ V + + GQ
Sbjct: 293 HWVNNLDRGKDFHCTAKFRYRQKDTGVTV---HISDDGQSVR-VDFDAPVRAITPGQAVV 348
Query: 368 FYQGTRCIGSGVILESW 384
FY G C+GS +I ++
Sbjct: 349 FYDGDECLGSAIIDAAY 365
>gi|451343103|ref|ZP_21912179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Eggerthia catenaformis OT 569 = DSM 20559]
gi|449338099|gb|EMD17251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Eggerthia catenaformis OT 569 = DSM 20559]
Length = 375
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 199/374 (53%), Gaps = 27/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW---FQEDF----ENFWTECPWEEDMK 72
+V + LSGGVDS+VA LL G+ +++ W D N CP EED
Sbjct: 3 RVVLGLSGGVDSAVAAYLLKKQGYEVICVFMRNWDSSLNNDVLGNPNNNNDVCPQEEDYN 62
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
A + + + V EYW V +Y ++EY+ GRTPNPD+LCN IKF AF++
Sbjct: 63 DAVKTAQHLGLEIRRVDFIKEYWDEVFTYFLDEYKQGRTPNPDILCNKHIKFKAFLNYAK 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ D++A+GHYA++ H SV+ D KDQTYFL L+Q QL+ +FP+G
Sbjct: 123 SIHADWIATGHYARIEHHG-----DRSVMLRGIDDNKDQTYFLCQLNQQQLRNTLFPIGH 177
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K+EVR+ A Q L D++DS GICF+G+ F EF+ +I G +++ ETG + +
Sbjct: 178 LTKKEVREIAAQLKLSVADKRDSTGICFIGERDFREFLKNYIPAKPGKMIDIETGKVIAE 237
Query: 253 HWGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL--- 307
H G +YTIGQR+GL + GGPW+V K+ N+++++ S D+ + L G+L
Sbjct: 238 HQGIMYYTIGQRKGLNIGGKGGPWFVAGKEYDQNILYIA----SGDQNKWLLSEGALITA 293
Query: 308 -KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
W+S P+E K R+ +L + ++ V + + GQ A
Sbjct: 294 VNWISDNFPKEDLNCTAKFRYRQQDNEVSLHFIN-----QHTLYVTFKHPIKSVTPGQAA 348
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G I
Sbjct: 349 VFYLGEECLGGGTI 362
>gi|392954438|ref|ZP_10319989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Hydrocarboniphaga effusa AP103]
gi|391857095|gb|EIT67626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Hydrocarboniphaga effusa AP103]
Length = 361
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/379 (35%), Positives = 212/379 (55%), Gaps = 26/379 (6%)
Query: 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDM 71
+ PH V V LSGGVDS+V+ LL G+ + ++ W ED + C +D
Sbjct: 3 AAPH-----VIVGLSGGVDSAVSAWLLKQQGYRVSGLFMVNW-TEDEAGY---CSSADDF 53
Query: 72 KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI 131
+ A+AVC+++D+PL V + EY + V + +Y G+TPNPD+LCN +KF F +
Sbjct: 54 QDARAVCEELDIPLHRVDFSAEYRQRVFDRFLADYAAGKTPNPDLLCNREVKFQPFREHA 113
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ D+VA+GHYA++ HS+AD P +L S + KDQTYFL+ +++ Q ++++FP+G
Sbjct: 114 LRLGADFVATGHYAQLDHSAAD---GPRLLR-SVTEDKDQTYFLALVARRQFEKVLFPIG 169
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++K EVR A + LPN +KDS GICF+G+ +F F+ ++ G +++ + G +G
Sbjct: 170 GLTKPEVRALAAKAGLPNHRKKDSTGICFIGEREFRSFLQHYLKPNPGPMID-DAGAVVG 228
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G +YT+GQR+GL + G PW+VV KD NNV+ VS++ +
Sbjct: 229 QHQGLMYYTLGQRKGLAIGGVRGAREAPWFVVAKDQPNNVLRVSQDGAHPLLMSNVLTTL 288
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+W+ P RL ++RH C ++ EDGG V+ + + +AAGQF
Sbjct: 289 PFEWIR-QPSPLPERLHARIRHRQILQAC--LVRVAEDGGVQ---VRFEQAQRAIAAGQF 342
Query: 366 AAFYQGTRCIGSGVILESW 384
Y G C+G G I ++
Sbjct: 343 CVLYDGQECLGGGEIAGAF 361
>gi|372266432|ref|ZP_09502480.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas sp. S89]
Length = 388
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/400 (32%), Positives = 211/400 (52%), Gaps = 25/400 (6%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSVA LL G+ ++K W ++D + C ++D+
Sbjct: 1 MATNAAKRVIVGMSGGVDSSVAALLLMRQGYQVEGLFMKNWDEDDGTEY---CTAKQDLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
A++VC ++ + L + EYW NV Y + EY+ GRTPNPD+LCN IKF F++
Sbjct: 58 DAESVCQRLGIKLHTANFAAEYWDNVFEYFLAEYKAGRTPNPDILCNREIKFKVFLEYAE 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ D +A+GHY + + D++ + + L D KDQ+YFL + +A+ + +FPLG
Sbjct: 118 MLGADAIATGHYTRRI----DKDGR-TYLGKGLDPNKDQSYFLHAVGEAEFAKSLFPLGE 172
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + +KDS GICF+G+ +F +F+ +++ G ++ G+ +G+
Sbjct: 173 LEKPEVRRIAEENGFITHSKKDSTGICFIGERRFKDFLEQYLPAQPGE-MQTPDGEVMGQ 231
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++TIGQRQGL + G PWYVV KD++ NV+ V++ +
Sbjct: 232 HAGLMYHTIGQRQGLGIGGVKGAGDQPWYVVGKDLERNVLLVAQGKHHPLLYSTGLEATQ 291
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
W+SG PP + R K R+ +C +++ G + V+ + + GQ
Sbjct: 292 AHWISGAPPAQCFRAAAKTRYRQDDQDCEVIV-----GEDGKLVISFDSPQRAVTPGQSV 346
Query: 367 AFYQGTRCIGSGVILESWDDQGFPVCEKALEIARMEDKSK 406
YQG C+G VI D+ + E +++AR K+K
Sbjct: 347 VIYQGDICLGGAVI-----DRATGIGEVDVDVARGAAKNK 381
>gi|417827294|ref|ZP_12473863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri J1713]
gi|420319761|ref|ZP_14821604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 2850-71]
gi|335576108|gb|EGM62366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri J1713]
gi|391252429|gb|EIQ11628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 2850-71]
Length = 368
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWGNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIKVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|15613824|ref|NP_242127.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
halodurans C-125]
gi|14195281|sp|Q9KDF2.1|MNMA_BACHD RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|10173877|dbj|BAB04980.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus
halodurans C-125]
Length = 371
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 201/374 (53%), Gaps = 18/374 (4%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
+ P Q +V V +SGGVDSSV LL G+ ++K W D EN C
Sbjct: 1 MEAKRPEQT--RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTAT 55
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED + VC+Q+ + V+ EYW V +Y +EEY+ GRTPNPDV+CN IKF AF+
Sbjct: 56 EDYQDVVQVCNQLGIAYYAVNFEKEYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFL 115
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
+ ++ DYVA+GHYA+V + D +Y+ L KD KDQTYFL+ LSQ QL R++F
Sbjct: 116 NHALTLGADYVATGHYAQV--KNVDGQYQ---LIRGKDPNKDQTYFLNALSQQQLSRVMF 170
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
PLG + K+EVR A + L +KDS GICF+GK F EF++ ++ G ++ G+
Sbjct: 171 PLGHLEKKEVRAIAERAGLATAKKKDSTGICFIGKRDFKEFLSSYLPAQPGE-MQTLDGE 229
Query: 249 FLGKHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
G H G +YT+GQRQGL + G PW+V+ K+++ N+++V + ++ R
Sbjct: 230 VKGTHDGLMYYTLGQRQGLGIGGSGEPWFVIGKNLEKNILYVGQGFHHPGLYSEGLRAIK 289
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ W+ L E +C + + + + DG V +E + + GQ
Sbjct: 290 VNWI--LRRESDEPFECTAKFRYRQPDQKVTVYPQSDGA---VEVLFAEPQRAITPGQAV 344
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G I
Sbjct: 345 VFYDGDVCLGGGTI 358
>gi|419114113|ref|ZP_13659143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC5A]
gi|377964813|gb|EHV28248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC5A]
Length = 368
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTARKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|118602730|ref|YP_903945.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
gi|166235080|sp|A1AX17.1|MNMA_RUTMC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|118567669|gb|ABL02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
Length = 363
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 207/370 (55%), Gaps = 22/370 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
K K+ V LSGGVDSSVA LL G+ A ++K W ++D + C E+D+ A+
Sbjct: 6 KNTKIIVGLSGGVDSSVATLLLLKQGYQVEALFMKNWEEDDKSGY---CSVEQDLSDAQK 62
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
+ D++DV L V+ + +YW +V + ++E++ GRTPNPDVLCN +IKF F++ S+
Sbjct: 63 IADKLDVKLHAVNFSADYWNDVFIHFLKEHKKGRTPNPDVLCNQKIKFRVFLEHALSLGA 122
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHYA++ + + K + D KDQ+YFL L+Q QL + +FPLG I+K
Sbjct: 123 DKIATGHYARIAEKNGTYQLKTGL-----DDSKDQSYFLHLLNQYQLSKSLFPLGEINKI 177
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VR A + ++KDS GICF+G+ FSEF+A ++ + +G I++ E G F+ H G
Sbjct: 178 DVRNIAIENGFVTANKKDSTGICFIGERNFSEFLATYLSKQQGDIVD-EQGQFIKHHQGL 236
Query: 257 WFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
FYTIGQR+GL++ GG PW+V +K ++ N + + + ++ ++ W+
Sbjct: 237 AFYTIGQRKGLKIGGGFGKSGEPWFVADKCIERNELMIVQGNHAL-LYHQILSASKPHWI 295
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S PP K+R+ +C MI ++ + QL + + GQ FY
Sbjct: 296 S-TPPTLPLMCSAKIRYRQQSQSC--MISQNDNKQIKVVFKQLQ---RAITPGQSIVFYD 349
Query: 371 GTRCIGSGVI 380
C+G +I
Sbjct: 350 NKTCLGGAII 359
>gi|425421831|ref|ZP_18803024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 0.1288]
gi|408346522|gb|EKJ60817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 0.1288]
Length = 368
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKVGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|425287961|ref|ZP_18678850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3006]
gi|408216255|gb|EKI40586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3006]
Length = 368
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLISVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|372271095|ref|ZP_09507143.1| tRNA-specific 2-thiouridylase MnmA [Marinobacterium stanieri S30]
Length = 377
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/367 (35%), Positives = 199/367 (54%), Gaps = 21/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + C +EDM A+AVCD
Sbjct: 11 KVIVGMSGGVDSSVSALLLMQQGYQVEGLFMKNWDEDDGTEY---CTAKEDMADAQAVCD 67
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ + D +
Sbjct: 68 KLGITLHGANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYAQMLGADLI 127
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + + +VL D KDQ+YFL + + +LK +FP+G + K EVR
Sbjct: 128 ATGHYVRRGERDSH-----TVLLKGLDNNKDQSYFLHQVGEEELKLSLFPVGELEKPEVR 182
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L D+KDS GICF+G+ +FS+F+ +++ G I E G+ +G+H G +Y
Sbjct: 183 RLAEEHGLITHDKKDSTGICFIGERRFSDFLKQYLPAQPGKI-ETPDGEVIGEHQGLMYY 241
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ KD+ NV+ + + L + W+SG
Sbjct: 242 TIGQRQGLGIGGLKNHPEEPWFAAAKDLDRNVLIAVQGKHPLLYSDWL-HASDIFWISGE 300
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P+ R + KVR+ +C ++E +GG + + + + GQ Y
Sbjct: 301 APQLPLRCKAKVRYRQSDQDC--VVEAAPEGGYRVV---FDQPQRAVTPGQSVVLYLDDV 355
Query: 374 CIGSGVI 380
C+G GVI
Sbjct: 356 CLGGGVI 362
>gi|254434432|ref|ZP_05047940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosococcus oceani AFC27]
gi|205822273|sp|Q3J9J6.2|MNMA_NITOC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|207090765|gb|EDZ68036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosococcus oceani AFC27]
Length = 367
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 200/370 (54%), Gaps = 20/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V LSGGVDSSVA L G+ + ++K W DF + +EC +D + A+AV
Sbjct: 5 KVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWV--DFAD-ESECTVAQDREDAQAVTS 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + + EYW V Y +EEYR GRTPNPD+LCN IKF F+D ++ +
Sbjct: 62 LLGISFHEANFAMEYWDRVFHYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNTLI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ DQ+ L +DK KDQ+YFL L Q QL +FPLG + K +VR
Sbjct: 122 ATGHYARI-----DQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ +F EF++R++ G + + +++G+H G +Y
Sbjct: 177 RIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLPAQPGEMRTPDK-EWIGQHDGLMYY 235
Query: 260 TIGQRQGLRLP------GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+GL + G PW+VV K++ N ++V++ + K + L W++G
Sbjct: 236 TLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNTLYVAQGRHHPWLKSLILEANQLHWVAGH 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP K+R+ +C L + +G I V+ + GQ FYQ
Sbjct: 296 PPPLPYSCTAKIRYRQTDQHCTLTA--IANG--YIKVI-FNAPQYAATPGQAIVFYQDDE 350
Query: 374 CIGSGVILES 383
C+G G I +
Sbjct: 351 CLGGGTITTT 360
>gi|385814070|ref|YP_005850463.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus helveticus H10]
gi|323466789|gb|ADX70476.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus helveticus H10]
Length = 375
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/377 (34%), Positives = 199/377 (52%), Gaps = 16/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGV---CTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW V Y + EY+ GRTPNPDV+CN++IKF +F+D
Sbjct: 58 DVKKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK V + + + KD KDQTYFL+ L+Q Q+K++IFPL
Sbjct: 118 DLDADYIAMGHYAKTVKDADGLTH----MMRPKDGNKDQTYFLNQLNQDQIKKVIFPLAN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K +VR+ A L +KDS GICF+G+ F +F++ + G ++ + G +G+
Sbjct: 174 LTKPQVREIALANGLAIAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPD-GKVVGE 232
Query: 253 HWGFWFYTIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD+K N + V + Y S + +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDM 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +G P ++ C + + C++ + +N A V E + + GQ
Sbjct: 293 SFFTGKPDHDV-EFHCSAKF--RYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALV 349
Query: 368 FYQGTRCIGSGVILESW 384
YQG C+G G I ++
Sbjct: 350 LYQGEECLGGGNIDAAY 366
>gi|421861837|ref|ZP_16293756.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Paenibacillus popilliae ATCC 14706]
gi|410828600|dbj|GAC44193.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Paenibacillus popilliae ATCC 14706]
Length = 369
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/365 (35%), Positives = 197/365 (53%), Gaps = 18/365 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D + + C E+D + + VC+
Sbjct: 9 RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNW---DEPDEFGHCTAEDDAEDVRRVCE 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +Y V SY +EEYR GRTPNPDV+CN IKFG F+ + DYV
Sbjct: 66 QIGIPYYTVNFERQYHDKVFSYFLEEYRRGRTPNPDVMCNREIKFGEFLQKALDLGADYV 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++V + + + D+ KDQTYFL+ L+Q QL R +FP+G + K +VR
Sbjct: 126 ATGHYARIVRENGQAKLLRGI-----DRNKDQTYFLNALNQEQLARAMFPIGHLPKPDVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS G+CF+G+ F EF+ +++ G +++ +G+ G+H G +Y
Sbjct: 181 RIAEEAGLATAKKKDSTGVCFIGERNFKEFLRQYLPAQPGDMIDIVSGEVKGRHDGLMYY 240
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
T+GQRQGL + G PW+V EKDV N ++V + R + W++G P
Sbjct: 241 TLGQRQGLGIGGSGTGEPWFVTEKDVARNRLYVVQGESHPSLYSTGLRATGVSWIAGEAP 300
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
+ RL C + + + IE DG V + + + GQ FY G C+
Sbjct: 301 D---RLHCTAKFRYRQPDQEVAIERSGDGAYE---VTFAMQQKAVTPGQAVVFYDGEVCL 354
Query: 376 GSGVI 380
G G I
Sbjct: 355 GGGTI 359
>gi|293374251|ref|ZP_06620579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Turicibacter sanguinis PC909]
gi|292647084|gb|EFF65066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Turicibacter sanguinis PC909]
Length = 377
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 205/385 (53%), Gaps = 23/385 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------C 65
M KG KV V +SGGVDSSVA LL G+ +++ W + C
Sbjct: 1 MSANKGKKVIVGMSGGVDSSVAAYLLKEQGYEVEGVFMRNWDSAANADVLGNPTLNDEVC 60
Query: 66 PWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFG 125
P E D AK V DQ+ + L V EYW V Y ++EYR GRTPNPD++CN +KF
Sbjct: 61 PQEVDYNDAKTVADQLGIKLHRVDFVQEYWDRVFMYFLDEYRAGRTPNPDIMCNKEVKFK 120
Query: 126 AFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKR 185
AF+D ++ DY+A GHYA+V H Q + D KDQTYFLS L+QAQL +
Sbjct: 121 AFLDYAMNLGCDYIAMGHYARVSHEGEVQMLR------GLDNNKDQTYFLSQLTQAQLSK 174
Query: 186 LIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAE 245
+FP+G + K EVR A + DL +KDS G+CF+G+ F++F+ ++ G + E
Sbjct: 175 TLFPVGELQKSEVRAIAAKLDLATAKKKDSTGVCFIGERNFTQFLQNYLPAQPGQMRTLE 234
Query: 246 TGDFLGKHWGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
G+ +G+H G +YTIGQR+GL + G W+V+ K++K+NV+ V + FD +
Sbjct: 235 -GEVVGEHIGLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQ---GFDHEYVYAD 290
Query: 304 VGSLKWLSGLPPEE-ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
+ ++ +P E + +C + + + + ++D N V++ E + +
Sbjct: 291 EALVSNVNWIPSERFVGTYRCTAKFRYRQPDIPVELTWIDDETLN---VKMLEPVRAVTP 347
Query: 363 GQFAAFYQGTRCIGSGVILESWDDQ 387
GQ A FY C+G G I ++ D+
Sbjct: 348 GQAAVFYLDEVCLGGGRIEVAYKDK 372
>gi|323524770|ref|YP_004226923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia sp. CCGE1001]
gi|323381772|gb|ADX53863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia sp. CCGE1001]
Length = 381
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 198/370 (53%), Gaps = 24/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W +D + C +D +V D
Sbjct: 5 KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D S+ + +
Sbjct: 62 LIGIDVEAVNFASEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V ++ E L + D KDQ+YFL L+QAQL + +FPLG I K VR
Sbjct: 122 ATGHYARVRENNGRFE-----LLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTRVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A Q LPN +KDS GICF+G+ F +F+ R++ G ++ G +G+H G FY
Sbjct: 177 KIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLPTQPGP-MKTTDGKVVGEHIGLAFY 235
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNY-YSFDKKRRLFRVGSLKWLSG 312
T GQR+G+ L G PW+V KD+ +N ++V++ + + + RL G+ W++G
Sbjct: 236 TFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHRL-TAGNTSWVAG 294
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQ--GLAAGQFAAFYQ 370
PP E K R+ C GG+ + QL+ DD + GQ A Y
Sbjct: 295 EPPAEGFACGAKTRYRQADARCTFSAAGA--GGD---LFQLTFDDAQWAVTPGQSAVLYD 349
Query: 371 GTRCIGSGVI 380
G C+G G+I
Sbjct: 350 GDVCLGGGII 359
>gi|170768217|ref|ZP_02902670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia albertii TW07627]
gi|366160727|ref|ZP_09460589.1| tRNA-specific 2-thiouridylase MnmA [Escherichia sp. TW09308]
gi|432371854|ref|ZP_19614904.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE11]
gi|170122983|gb|EDS91914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia albertii TW07627]
gi|430898183|gb|ELC20318.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE11]
Length = 368
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|427392348|ref|ZP_18886353.1| tRNA-specific 2-thiouridylase mnmA [Alloiococcus otitis ATCC 51267]
gi|425731309|gb|EKU94127.1| tRNA-specific 2-thiouridylase mnmA [Alloiococcus otitis ATCC 51267]
Length = 375
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 197/375 (52%), Gaps = 26/375 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL AG+ ++K W D EN C +D V +
Sbjct: 8 RVVVGMSGGVDSSVTALLLKEAGYDVVGIFMKNWDDTD-EN--GVCTATQDYNDVALVAN 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ +EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DYV
Sbjct: 65 QIGIPYYSVNFEEEYWDKVFQYFLDEYKKGRTPNPDVMCNKEIKFRAFLDYALDLGADYV 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+++ D + +L+ D KDQTYFL+ LSQ QL +++FPLG + K+EVR
Sbjct: 125 ATGHYARLLR---DADGTAHLLK-GLDGNKDQTYFLNQLSQDQLSKVLFPLGDMDKKEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L +KDS GICF+G+ F +F+ ++ G +E G+ + +H G +Y
Sbjct: 181 AIAERAGLATAKKKDSTGICFIGERNFKDFLMDYLPAQPGN-METLDGEVVNQHDGLMYY 239
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQR+GL + GG PW+V+ KD+ NV+ V + Y +
Sbjct: 240 TIGQRKGLGIGGGVNHQNEPWFVIGKDLDRNVLLVGQGYDHDHLYASHLEASDFSFTQEA 299
Query: 314 PPEEISRLQCKVRHG----PGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
P+E R Q K R+ P + N +N A V + + + GQ FY
Sbjct: 300 KPQETFRCQAKFRYRTKEVPATVHYNAQ--------DNTARVDFDQTARAVTPGQAIVFY 351
Query: 370 QGTRCIGSGVILESW 384
G C+G G I +++
Sbjct: 352 DGDECLGGGTIDQAY 366
>gi|84995316|ref|XP_952380.1| trna methyl transferase [Theileria annulata strain Ankara]
gi|65302541|emb|CAI74648.1| trna methyl transferase, putative [Theileria annulata]
Length = 1070
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/356 (38%), Positives = 201/356 (56%), Gaps = 43/356 (12%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+VAVL+SGGVDSS+AL ++ S G AF+LK+ D N C D+ YA VC+
Sbjct: 298 RVAVLVSGGVDSSLALWIMKSRGFDVQAFHLKV---NDLSNGPGLCS-SNDISYAMEVCN 353
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ V L V+ + Y K+++S ++++YR G PNPD+LCN+RIKFG F+ + FDYV
Sbjct: 354 ILRVTLHVLPFSQVYDKHILSDVLDDYRKGEVPNPDILCNSRIKFGEFLKMATDWGFDYV 413
Query: 140 ASGHYAKVVHS--SADQEYKPSVLE---------------LSKDKVKDQTYFLSHLSQAQ 182
A+GHYA + + +Q PS L+ LS D VKDQTYFLS L+Q Q
Sbjct: 414 ATGHYATLCDDFFTKEQIKSPSYLDGCTSINGYYRIKRLCLSTDTVKDQTYFLSRLNQNQ 473
Query: 183 LKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVIL 242
+ RLIFP+G I K +VR FA LP ++KDS G+CFL + SE++ + +GE G I+
Sbjct: 474 MSRLIFPIGNILKTQVRDFAKTVGLPTYNKKDSFGLCFLEDLDLSEYLTKTLGESRGPIV 533
Query: 243 EAETGDFLGKHWGFWFYTIGQRQGL-------RLPGGPWYVVEKDVKNNVVFVSRNYYS- 294
E ET +G+H G + +TIGQ++ + + P YVV+KD+ N ++VS +Y
Sbjct: 534 EYETNKVIGEHNGLYNFTIGQKKTINNYLNPKHVGNTPKYVVKKDIYKNTLYVSASYNED 593
Query: 295 -FDKKRRL---FRVGSLKWLSGLPPEEISRLQ----------CKVRHGPGFYNCNL 336
F R + F+V W + + I+++Q K+RH P + CN+
Sbjct: 594 FFTNPRGIRSSFKVRDFFWNTPDYKDLINKVQSEVSDNFKFKVKLRHTPNYNYCNI 649
>gi|161986546|ref|YP_310111.2| tRNA-specific 2-thiouridylase MnmA [Shigella sonnei Ss046]
gi|383177788|ref|YP_005455793.1| tRNA-specific 2-thiouridylase MnmA [Shigella sonnei 53G]
gi|414575415|ref|ZP_11432620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella sonnei 3233-85]
gi|418264143|ref|ZP_12884700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella sonnei str. Moseley]
gi|420357931|ref|ZP_14858933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella sonnei 3226-85]
gi|420362777|ref|ZP_14863686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella sonnei 4822-66]
gi|205829110|sp|Q3Z2Y6.2|MNMA_SHISS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|391286272|gb|EIQ44819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella sonnei 3226-85]
gi|391287843|gb|EIQ46358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella sonnei 3233-85]
gi|391295590|gb|EIQ53734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella sonnei 4822-66]
gi|397902259|gb|EJL18584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella sonnei str. Moseley]
Length = 368
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPGQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|56460418|ref|YP_155699.1| tRNA-specific 2-thiouridylase MnmA [Idiomarina loihiensis L2TR]
gi|73920125|sp|Q5QYZ7.1|MNMA_IDILO RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|56179428|gb|AAV82150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Idiomarina loihiensis L2TR]
Length = 371
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/378 (35%), Positives = 205/378 (54%), Gaps = 29/378 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+ A+ VC+
Sbjct: 7 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDEY---CAASDDLADAEKVCE 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
+ + L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A +++ DY
Sbjct: 64 TLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEALDADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + E + D KDQ+YFL LS + + +FP+G + K EV
Sbjct: 124 IATGHYVRRQQRDGKWEMLRGL-----DSNKDQSYFLYTLSHEHIAQTLFPVGELEKPEV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ KF +F+ +++ G I E+ G+ LG+H G +
Sbjct: 179 RRIAEEQGLVTADKKDSTGICFIGERKFKDFLQQYLPAKPGPI-ESVEGEALGEHEGLMY 237
Query: 259 YTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR----VGSLK 308
+T+GQR+GL + G PWYVV+KDV+ NV+ V++ K RL+ G L
Sbjct: 238 HTLGQRKGLHIGGMADNSGEPWYVVDKDVERNVLIVAQG----KKHPRLYSQGLIAGQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+S P E K R+ C + + +G VQ E + GQ A F
Sbjct: 294 WVSRNAPPEAFDCTVKTRYRQQDIPCR--VTPLSNGDFQ---VQFKEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVILESWDD 386
Y C+G G+I + D
Sbjct: 349 YSDDVCLGGGIIEQRITD 366
>gi|294636777|ref|ZP_06715115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Edwardsiella tarda ATCC 23685]
gi|291089992|gb|EFE22553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Edwardsiella tarda ATCC 23685]
Length = 376
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 203/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C D+ A+AVCD
Sbjct: 17 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNDEY---CSAAADLADAQAVCD 73
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV ++EYR GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 74 KLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 133
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + + V D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 134 IATGHYVRRRDIDGTTQLLRGV-----DANKDQSYFLYTLSHQQVAQSLFPVGELEKPEV 188
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ ATQ DL +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 189 RRIATQLDLATAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GQEIGEHQGLMY 247
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NNV+ V++ + RLF G L
Sbjct: 248 HTLGQRKGLGIGGTKEGNEEPWYVVDKDVANNVLLVAQGH----DHPRLFSNGLIAQQLH 303
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D V+ + + GQ A F
Sbjct: 304 WVDRRPLTAELRCTVKTRYRQADIPCRVI--PIDD---TRIEVRFDQPVAAVTPGQSAVF 358
Query: 369 YQGTRCIGSGVI 380
YQ C+G G+I
Sbjct: 359 YQDEVCLGGGII 370
>gi|395764231|ref|ZP_10444900.1| tRNA-specific 2-thiouridylase MnmA [Janthinobacterium lividum PAMC
25724]
Length = 371
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/375 (36%), Positives = 197/375 (52%), Gaps = 23/375 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV + +SGGVDSSVA +L G+ ++K W +D + C +D A +V D
Sbjct: 5 KVVIGMSGGVDSSVAAWMLKEQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDAASVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ V +E V+ EY V + + EY+ GRTPNPDVLCN IKF AF+D ++ D +
Sbjct: 62 VIGVDIEAVNFASEYKDRVFADFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMTLGADLI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V A Q+ L + D KDQ+YFL L+QAQL + +FPLG I K +VR
Sbjct: 122 ATGHYARV--RQAPQDAGRYELLKAVDASKDQSYFLHRLNQAQLSKTLFPLGEIPKTQVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A Q LPN +KDS GICF+G+ F EF+ R++ G + A+ G +G+H G FY
Sbjct: 180 KIAEQLALPNAQKKDSTGICFIGERPFREFLNRYLSYQPGPMKTAD-GKTVGEHVGLSFY 238
Query: 260 TIGQRQGLRLPG-----------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLK 308
T+GQR+G+ + G WYV KD+ NN ++V + +
Sbjct: 239 TLGQRKGIGIGGVKSYQNADGSSDAWYVARKDIANNTLWVVQGHDHPWLLSPALTADQAS 298
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++G P+ L K R+ C L+ DG E+ ++ + + GQ A
Sbjct: 299 WVAGTAPQA-GTLSAKTRYRQADVACQLL----PDGNEHFSLA-FDQAQWAVTPGQSAVL 352
Query: 369 YQGTRCIGSGVILES 383
Y G C+G G+I +
Sbjct: 353 YDGDVCLGGGIIASA 367
>gi|451965010|ref|ZP_21918271.1| tRNA-specific 2-thiouridylase MnmA [Edwardsiella tarda NBRC 105688]
gi|451316128|dbj|GAC63633.1| tRNA-specific 2-thiouridylase MnmA [Edwardsiella tarda NBRC 105688]
Length = 367
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 203/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNDEY---CSAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV ++EYR GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + + V D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVRRRDIDGTTQLLRGV-----DANKDQSYFLYTLSHQQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ ATQ DL +KDS GICF+G+ KF +F+ R++ G I+ + G +G+H G +
Sbjct: 180 RRIATQLDLATAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GQEIGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NNV+ V++ + RLF G L
Sbjct: 239 HTLGQRKGLGIGGTKEGNEEPWYVVDKDVANNVLLVAQGH----DHPRLFSNGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D V+ + + GQ A F
Sbjct: 295 WVDRRPLTAELRCTVKTRYRQADIPCRVI--PIDD---TRIEVRFDQPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQ C+G G+I
Sbjct: 350 YQDEVCLGGGII 361
>gi|432718166|ref|ZP_19953150.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE9]
gi|431265269|gb|ELF56966.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE9]
Length = 368
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + V E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD---DRIEVTFDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|344344094|ref|ZP_08774959.1| tRNA-specific 2-thiouridylase mnmA [Marichromatium purpuratum 984]
gi|343804378|gb|EGV22279.1| tRNA-specific 2-thiouridylase mnmA [Marichromatium purpuratum 984]
Length = 371
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 196/372 (52%), Gaps = 28/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
++ + LSGGVDS+VA L GH A ++K W +ED + C ED+ A+AV +
Sbjct: 12 RIIIGLSGGVDSAVAAHRLLEQGHQVEALFMKNW-EEDDDPHGGYCAAAEDLADARAVAE 70
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L V+ EYW V + + EYR RTPNPD+LCN IKF AF++ ++ + +
Sbjct: 71 RLGIRLHTVNFATEYWDRVFEHFLAEYRALRTPNPDILCNREIKFAAFLEHALNLGAEAI 130
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V H ++ L L D KDQTYFL L Q QL FPL + K EVR
Sbjct: 131 ATGHYARVEHGASGHR-----LCLCADANKDQTYFLHLLDQHQLAHARFPLHDLGKPEVR 185
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L N +KDS GICF+G+ +F EF+AR++ G I + E G LG+H G +Y
Sbjct: 186 AIARRLGLANAAKKDSTGICFIGERRFGEFLARYVDRTPGPIEDPE-GRVLGEHHGLAYY 244
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL-----K 308
TIGQRQGL + G PW+V KD ++N + V + K L GSL
Sbjct: 245 TIGQRQGLGIGGIAGGGEAPWFVATKDPEHNRLIVVQG-----KHHPLLMAGSLHAQPPH 299
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W++G P ++RH C VE G V+ +E + + GQ F
Sbjct: 300 WIAGEAPATPFDCLARLRHRQPLQRCT-----VETLGPEGCQVRFAEAQRAVTPGQSIVF 354
Query: 369 YQGTRCIGSGVI 380
YQG C+G VI
Sbjct: 355 YQGETCLGGAVI 366
>gi|422845437|ref|ZP_16892147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. lactis DSM 20072]
gi|325684365|gb|EGD26534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. lactis DSM 20072]
Length = 375
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/380 (35%), Positives = 200/380 (52%), Gaps = 18/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D N C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNW---DDTNDDGVCTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW+ V Y ++EY+ GRTPNPD++CNT IKF +F++
Sbjct: 58 DVKKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK + E + + KD KDQTYFLS L+Q Q+KR++FPL
Sbjct: 118 DLDADYLAMGHYAKTMVD----ENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQD 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A + L N +KDS GICF+G+ F F++ + G ++ + G +G
Sbjct: 174 LTKPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPD-GKVVGH 232
Query: 253 HWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD++ N + V + Y S + +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGM 292
Query: 308 KWLSGLPPEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ +G P E+ + K R + C++ + A V E + + GQ
Sbjct: 293 TFFTGNPEEDTEFKATAKFR----YRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQAL 348
Query: 367 AFYQGTRCIGSGVILESWDD 386
Y G C+G G I ++ D
Sbjct: 349 VLYNGEECLGGGNIDAAFKD 368
>gi|389796842|ref|ZP_10199893.1| tRNA-specific 2-thiouridylase MnmA [Rhodanobacter sp. 116-2]
gi|388448367|gb|EIM04352.1| tRNA-specific 2-thiouridylase MnmA [Rhodanobacter sp. 116-2]
Length = 382
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 195/371 (52%), Gaps = 21/371 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+KV + +SGGVDSSVA LL +G+ +++ W ++D C + D K A AVC
Sbjct: 1 MKVMLGISGGVDSSVAALLLQQSGYEVEGLFMQNWEEDDRAG---PCTADADRKDAVAVC 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
++ +P + EYW V ++ + EYR GRTPNPDVLCN IKF F+D ++ +
Sbjct: 58 GRLGIPFHARNFAAEYWDGVFAHFLAEYRAGRTPNPDVLCNREIKFKTFLDEARALGAEK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA++ D Y+ L + D KDQ+YFL L Q QL +FPLG I K V
Sbjct: 118 IATGHYARI--DCKDGHYR---LLRAVDAAKDQSYFLHALGQQQLAATLFPLGGIEKSRV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A LP +KDS GICF+G+ F F+A++I G + G+ +G+H G +
Sbjct: 173 REIARAATLPTHAKKDSTGICFIGERDFRGFLAQYIPACPGE-MRTPDGELIGEHQGAMY 231
Query: 259 YTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQR GL + G WYVV KDV NV++V++ + R R W++G
Sbjct: 232 YTLGQRNGLGIGGRHGASGEAWYVVGKDVTANVLYVAQGGENHWLYSRRLRSEPPSWIAG 291
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P R + R+ C +++ +DG E V+ E + + GQ Y G
Sbjct: 292 AAPATRFRCTARTRYRQADQACAVVV--TDDGLE----VRFDEPQRAVTPGQSVVLYDGE 345
Query: 373 RCIGSGVILES 383
C+G VI +
Sbjct: 346 VCLGGAVIAAT 356
>gi|374262766|ref|ZP_09621328.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
[Legionella drancourtii LLAP12]
gi|363536818|gb|EHL30250.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
[Legionella drancourtii LLAP12]
Length = 361
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 201/367 (54%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDSSVA LL G+ ++K W Q+D + F CP +D+ A+AVC+
Sbjct: 4 KIIVGMSGGVDSSVAAWLLKEQGYEVEGLFMKNWEQDDTDGF---CPAAQDLADAQAVCN 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+++PL V+ +++YW+ V + + EY GRTPNPDVLCN IKF AF++ + DY+
Sbjct: 61 QLNIPLHSVNFSEQYWERVFMHFLSEYEKGRTPNPDVLCNKEIKFNAFLNYALDLGADYI 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYAK S+ L +KD+ KDQTYFL + A L + +FP+G +K E+R
Sbjct: 121 ATGHYAKNKISN-----NIGHLLKAKDRDKDQTYFLHAVDPAALAKTLFPIGDYTKPEIR 175
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+FA Q L + +KDS GICF+G+ +F F+ I G I + G LGKH G FY
Sbjct: 176 EFAKQLGLVTQAKKDSTGICFIGEKRFKTFLKEFILAKPGEIKNMD-GSVLGKHDGLMFY 234
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQRQGL + G PWYVV+KDV N ++V++ + G + WL+
Sbjct: 235 TLGQRQGLGIGGTQNSTEDPWYVVDKDVATNTLYVAQGSQHPMLYAQGLICGPIHWLADC 294
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
K R+ C MI DG ++ V S + + GQ+ FY +
Sbjct: 295 KDNLPLTCYAKTRYRQAEQGC--MIS-PPDG--DLHYVMFSSPQRAVTPGQYIVFYDKNQ 349
Query: 374 CIGSGVI 380
C+G I
Sbjct: 350 CLGGATI 356
>gi|293414424|ref|ZP_06657073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B185]
gi|291434482|gb|EFF07455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli B185]
Length = 368
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + V D + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVRRV----DVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGKVCLGGGII 360
>gi|227514810|ref|ZP_03944859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus fermentum ATCC 14931]
gi|260663608|ref|ZP_05864497.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN]
gi|227086800|gb|EEI22112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus fermentum ATCC 14931]
gi|260551834|gb|EEX24949.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN]
Length = 377
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/383 (34%), Positives = 204/383 (53%), Gaps = 20/383 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MTDNSHTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V Q+ +P V+ EYW V +Y I+E++ GRTPNPDV+CN IKF AF++ +
Sbjct: 58 DVAKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYAN 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DYVA+GHYA + A + L +KD+ KDQTYFLS L AQL +++FPL
Sbjct: 118 QLGADYVATGHYADLKRDEAGNMH----LMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAG 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKI-KFSEFVARHIGEMEGVILEAETGDFLG 251
+K+EVR+ A L D+KDS GICF+G+ F EF+++++ +G ++ G +G
Sbjct: 174 YTKKEVRQLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLPAQQGE-MQTVDGKVVG 232
Query: 252 KHWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTIGQR+GL L G PW+V+ KD+ NV++V + Y +
Sbjct: 233 THAGLMYYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASD 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD--QGLAAGQ 364
+ W+ + + C + + + ++ +DG +V ++ DD + + GQ
Sbjct: 293 IHWVDDVVSRYGTEFHCTAKFRYRQKDEGVTVKLSDDG----QMVTVTSDDPARAITPGQ 348
Query: 365 FAAFYQGTRCIGSGVILESWDDQ 387
FY G C+GS +I +++ +
Sbjct: 349 AVVFYDGDECLGSAIIDRAYNQE 371
>gi|381182877|ref|ZP_09891657.1| tRNA-specific 2-thiouridylase MnmA [Listeriaceae bacterium TTU
M1-001]
gi|380317233|gb|EIA20572.1| tRNA-specific 2-thiouridylase MnmA [Listeriaceae bacterium TTU
M1-001]
Length = 372
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 206/389 (52%), Gaps = 44/389 (11%)
Query: 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDM 71
+ K ++V V +SGGVDSSV LL G+ ++K W +D + F C ED
Sbjct: 2 TTKENKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDY 58
Query: 72 KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI 131
+ V +Q+ +P V+ EYW V +Y + EY+ GRTPNPDV+CN IKF AF++
Sbjct: 59 EDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLREYKLGRTPNPDVMCNKEIKFKAFLEHA 118
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
S+ DYVA+GHYA++ + + + V D+ KDQTYFL+ LS+ QL ++FPLG
Sbjct: 119 ESLGADYVATGHYARIRRENGEIKLLRGV-----DRNKDQTYFLNQLSEEQLSHVMFPLG 173
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHI----GEMEGVILEAETG 247
+ K EVR A + L ++KDS GICF+G+ F +F++ ++ GEM+ + TG
Sbjct: 174 EMEKSEVRAIAQKAGLATANKKDSTGICFIGERNFKQFLSEYLPAKPGEMKTL-----TG 228
Query: 248 DFLGKHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+GKH G +YTIGQR GL + G PW+VV KD+K NV+FV + ++
Sbjct: 229 KKIGKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHH----------D 278
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD-------- 357
SL + + L ++S KVR + C + ++ ++ V L +D
Sbjct: 279 SL-YSNSLVATDVSFTSNKVRE--KHFTCTAKFRYRQE--DSAVTVHLRDDHTAEVVFDA 333
Query: 358 --QGLAAGQFAAFYQGTRCIGSGVILESW 384
+ + GQ FY G CIG I W
Sbjct: 334 PVRAITPGQAVVFYDGEECIGGATIDTVW 362
>gi|395242171|ref|ZP_10419170.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus pasteurii CRBIP
24.76]
gi|394480532|emb|CCI85410.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus pasteurii CRBIP
24.76]
Length = 375
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 196/377 (51%), Gaps = 16/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSVA LL + G+ ++K W D C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVAALLLKNQGYDVVGVFMKNWDDTDDSGV---CTATEDFE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW V Y ++EY+ GRTPNPD++CN+ IKF +F++
Sbjct: 58 DVKKVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDIMCNSEIKFKSFLEFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK V E + + KD KDQTYFLS LSQ Q+K++IFPL
Sbjct: 118 DLDADYIAMGHYAKTVTD----ENGVTHMMRPKDGNKDQTYFLSQLSQDQIKKVIFPLAD 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K +VR+ A L +KDS GICF+G+ F +F+ + G +++ G+ +G+
Sbjct: 174 LTKPQVREIALANGLATAKKKDSTGICFIGERNFRKFLTEFLPAKSGKMVKP-NGEVVGE 232
Query: 253 HWGFWFYTIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD+K N + V + Y S +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYADRLTASDM 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +G P + + C + + C+L + N V E + + GQ
Sbjct: 293 SFFTGQPDHDF-EMHCTAKF--RYRQCDLGVTVHYHADTNTVDVYFDEPARAITPGQALV 349
Query: 368 FYQGTRCIGSGVILESW 384
Y G CIG G I ++
Sbjct: 350 LYDGDECIGGGNIDAAY 366
>gi|73855169|gb|AAZ87876.1| conserved hypothetical protein [Shigella sonnei Ss046]
Length = 383
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 208/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPGQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|375001682|ref|ZP_09726022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Infantis
str. SARB27]
gi|353076370|gb|EHB42130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Infantis
str. SARB27]
Length = 383
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALDD--DRIEVI-FDESVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YSGEVCLGGGII 375
>gi|217969633|ref|YP_002354867.1| tRNA-specific 2-thiouridylase MnmA [Thauera sp. MZ1T]
gi|217506960|gb|ACK53971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thauera sp. MZ1T]
Length = 365
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+KV V +SGGVDS+V LL G+ T ++K W +D + C +D+ +VC
Sbjct: 1 MKVVVGMSGGVDSAVTALLLKRQGYQVTGLFMKNWEDDDDSEY---CSTRQDLVDVASVC 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
D + + LEVV+ + EY V + + EY GRTPNPDVLCN+ IKF F+D + +
Sbjct: 58 DVIGIDLEVVNFSAEYKDRVFADFLHEYEAGRTPNPDVLCNSEIKFRCFLDHAMQLGAER 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+V + D + +L+ ++D KDQ+YFL L+Q QL + +FPLG + K EV
Sbjct: 118 IATGHYAQVREWANDGRSEYQLLK-AEDGTKDQSYFLYRLNQEQLAKTMFPLGALYKREV 176
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L ++KDS GICF+G+ F EF+ R++ G I + G LG+H G +
Sbjct: 177 RRIAAEAGLHVAEKKDSTGICFIGERPFREFLMRYLPTRPGEIRALDDGRVLGEHQGLMY 236
Query: 259 YTIGQRQGLRLPG-----------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
+TIGQR+GL + G WYV KDVK NV++V + + + G L
Sbjct: 237 HTIGQRKGLHIGGLKGNQDEAGEHEAWYVAGKDVKANVLYVVQGHAHPALLKDRLVAGDL 296
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++G P K R+ C I+ + DG IA Q + GQ
Sbjct: 297 NWIAGRDPHSHWVYTAKPRYRTPDQPCE--IDRIVDGRAEIAFAQ---PQWAVTPGQSVV 351
Query: 368 FYQGTRCIGSGVIL 381
Y+ C+G G+IL
Sbjct: 352 VYESKVCLGGGIIL 365
>gi|399520430|ref|ZP_10761206.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas pseudoalcaligenes
CECT 5344]
gi|399111871|emb|CCH37765.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas pseudoalcaligenes
CECT 5344]
Length = 370
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 205/374 (54%), Gaps = 25/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C +D+ A+AVCD
Sbjct: 8 RVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWDEDDGTEY---CTAMDDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D S+ D +
Sbjct: 65 RIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D + + +L+ D KDQ+YFL + Q+ + +FP+G + K +VR
Sbjct: 125 ATGHYVR----RRDIDGRTELLK-GLDPNKDQSYFLHAVGGEQIAKTLFPVGELEKPQVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A +++L +KDS GICF+G+ +FS+F+ +++ G I E G +G+H G ++
Sbjct: 180 AIAEKYELATAKKKDSTGICFIGERRFSDFLKQYLPAQPGDI-ETTEGQVIGRHHGLMYH 238
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWLSG 312
TIGQRQGL + G PWYV+ KD+ NV+ V + N + + R L + W++
Sbjct: 239 TIGQRQGLGIGGLKDASDDPWYVLRKDLTRNVLIVGQGNEHPWLFSRALL-ASEIYWVNP 297
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ RL KVR+ +C L E E G + E + + GQ FY G
Sbjct: 298 VDLSSPRRLTAKVRYRQNDQHCTL--ERTETGYRAV----FDEPQRAVTPGQSVVFYDGE 351
Query: 373 RCIGSGVI--LESW 384
C+G GVI E+W
Sbjct: 352 VCLGGGVIETAEAW 365
>gi|171778579|ref|ZP_02919706.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282802|gb|EDT48226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantarius subsp. infantarius ATCC
BAA-102]
Length = 406
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 198/374 (52%), Gaps = 20/374 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 34 MTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNW--DDTDEFGV-CTATEDYK 90
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 91 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 150
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V S D++ +L D KDQTYFLS LSQ QL++++FPLG
Sbjct: 151 TLGADYVATGHYAQV---SRDEDGTVHMLR-GADNNKDQTYFLSQLSQEQLEKVMFPLGH 206
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + L +KDS GICF+G+ F +F+++++ +G ++ + D +G+
Sbjct: 207 LKKPEVRKIAERAGLVTAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTVDGRD-MGE 265
Query: 253 HWGFWFYTI------GQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTI G PW+VV KD+ N+++V + +Y S
Sbjct: 266 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASS 325
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E + K R+ + HV+ G+ V+ E + + GQ
Sbjct: 326 IHFTRDMPEEFTMEVTAKFRYRQPDSKVTV---HVK--GDKAEVI-FDEPQRAITPGQAV 379
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 380 VFYDGEECLGGGII 393
>gi|229019618|ref|ZP_04176430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1273]
gi|228741666|gb|EEL91854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1273]
Length = 376
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 207/374 (55%), Gaps = 18/374 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
+PH+ +V + +SGGVDSSVA LL G+ ++K W D EN C ED
Sbjct: 9 LPHET--RVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYN 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
VC+Q+ +P V+ +YW V +Y ++EYR GRTPNPDV+CN IKF AF++
Sbjct: 64 DVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHAI 123
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V + D EYK + D KDQTYFL+ LSQ QL + +FPLG
Sbjct: 124 ALGADYVATGHYARVAY--MDGEYK---MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K ++R+ AT L +KDS GICF+G+ F +F++ ++ GV ++ +G+ GK
Sbjct: 179 LKKPQIREMATAAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGV-MQTLSGEVKGK 237
Query: 253 HWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
H G +YTIGQR GL + G PW+ V K++K N+++V + +++ ++ W+
Sbjct: 238 HDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWV 297
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
S E + K R+ + + ++ V+ EN + E + + GQ FY
Sbjct: 298 SNKAKETEFKCTAKFRYRQA--DNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYD 352
Query: 371 GTRCIGSGVILESW 384
G C+G I E +
Sbjct: 353 GDECLGGATIDEVY 366
>gi|406026584|ref|YP_006725416.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus buchneri CD034]
gi|405125073|gb|AFR99833.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Lactobacillus buchneri CD034]
Length = 374
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 199/377 (52%), Gaps = 17/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MQDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V +++ +P V+ EYW V +Y ++EY+ GRTP+PDV+CN IKF AF+D
Sbjct: 58 DVAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ + + L + D KDQTYFLS LS QL R++FP+G
Sbjct: 118 ELGADYIATGHYAQLTRDADGHNH----LLRASDGNKDQTYFLSQLSADQLDRVMFPIGN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K +VRK A + L D+KDS GICF+G+ F F+ ++ G ++ + G G+
Sbjct: 174 LVKPDVRKIAREAGLATADKKDSVGICFIGEKNFKNFLGHYLPATPGKMMTVD-GKVKGQ 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + G PW+VV KD+K N+++V + Y++ +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKQNILYVGKGYHNPLLYADYLEASDI 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ L + K R+ + H+ D G+++ V + + GQ
Sbjct: 293 HWVNNLDRGKDFHCTAKFRYRQKDTGVTV---HISDDGQSVR-VDFDAPVRAITPGQAVV 348
Query: 368 FYQGTRCIGSGVILESW 384
FY G C+GS +I ++
Sbjct: 349 FYDGDECLGSAIIDAAY 365
>gi|76810425|ref|YP_334767.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei
1710b]
gi|126451955|ref|YP_001067626.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei
1106a]
gi|242317503|ref|ZP_04816519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 1106b]
gi|254191526|ref|ZP_04898029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei Pasteur 52237]
gi|254194966|ref|ZP_04901396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei S13]
gi|254261623|ref|ZP_04952677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 1710a]
gi|254299216|ref|ZP_04966666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 406e]
gi|123598034|sp|Q3JNT6.1|MNMA_BURP1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205811476|sp|A3NZ55.1|MNMA_BURP0 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|76579878|gb|ABA49353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 1710b]
gi|126225597|gb|ABN89137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 1106a]
gi|157808903|gb|EDO86073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 406e]
gi|157939197|gb|EDO94867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei Pasteur 52237]
gi|169651715|gb|EDS84408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei S13]
gi|242140742|gb|EES27144.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 1106b]
gi|254220312|gb|EET09696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 1710a]
Length = 383
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 193/367 (52%), Gaps = 17/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + C +D +V D
Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D S+ +
Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V E L + D KDQ+YFL L+QAQL + +FPLG I K VR
Sbjct: 122 ATGHYARVRERDGRFE-----LLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ F +F+ R++ G ++ G +GKH G FY
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGP-MKTPDGKTVGKHIGLAFY 235
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T GQR+G+ L G PW+V KD+ +N ++V + + + R G++ W++G
Sbjct: 236 TFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAGE 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + +R K R+ C + G E ++V E + GQ A Y G
Sbjct: 296 PPADGARCGAKTRYRQADAPCAFG-RAAQAGDERFSLV-FDEPQWAVTPGQSAVLYDGDV 353
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 354 CLGGGII 360
>gi|417334359|ref|ZP_12117596.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Alachua
str. R6-377]
gi|353575360|gb|EHC38122.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Alachua
str. R6-377]
Length = 368
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNSKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YSGEVCLGGGII 360
>gi|194433661|ref|ZP_03065937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella dysenteriae 1012]
gi|416285683|ref|ZP_11647832.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Shigella boydii ATCC 9905]
gi|417672493|ref|ZP_12321960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella dysenteriae 155-74]
gi|417690004|ref|ZP_12339230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella boydii 5216-82]
gi|194418090|gb|EDX34183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella dysenteriae 1012]
gi|320179167|gb|EFW54125.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Shigella boydii ATCC 9905]
gi|332089265|gb|EGI94371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella boydii 5216-82]
gi|332092905|gb|EGI97973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella dysenteriae 155-74]
Length = 368
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGVHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|58337130|ref|YP_193715.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus NCFM]
gi|227903706|ref|ZP_04021511.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796]
gi|73920126|sp|Q5FKU0.1|MNMA_LACAC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|58254447|gb|AAV42684.1| tRNA-methyltransferase [Lactobacillus acidophilus NCFM]
gi|227868593|gb|EEJ76014.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796]
Length = 375
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/373 (34%), Positives = 196/373 (52%), Gaps = 16/373 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGV---CTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN++IKF +F++
Sbjct: 58 DVKKVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK + + + + KD KDQTYFLS LSQ Q+K++IFPL
Sbjct: 118 DLDADYIAMGHYAKTITDANGVTH----MMRPKDGNKDQTYFLSQLSQDQIKKVIFPLAN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K +VR+ A L +KDS GICF+G+ F +F++ + G ++ E G +G+
Sbjct: 174 LTKPQVREIALANGLVTAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPE-GKVVGE 232
Query: 253 HWGFWFYTIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD+K N + V + Y S + +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDM 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +G P + + C + + C++ + +N V E + + GQ
Sbjct: 293 SFFTGKPDHDF-EMHCTAKF--RYRQCDIGVTVKYHADDNTVDVYFDEPARAVTPGQALV 349
Query: 368 FYQGTRCIGSGVI 380
Y G CIG G I
Sbjct: 350 LYNGEECIGGGNI 362
>gi|379706238|ref|YP_005204697.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Streptococcus infantarius subsp. infantarius CJ18]
gi|374682937|gb|AEZ63226.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Streptococcus infantarius subsp. infantarius CJ18]
Length = 373
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 198/374 (52%), Gaps = 20/374 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 1 MTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNW--DDTDEFGV-CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V S D++ +L D KDQTYFLS LSQ QL++++FPLG
Sbjct: 118 TLGADYVATGHYAQV---SRDEDGTVHMLR-GADNNKDQTYFLSQLSQEQLEKVMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + L +KDS GICF+G+ F +F+++++ +G ++ + D +G+
Sbjct: 174 LKKPEVRKIAERAGLVTAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTVDGRD-MGE 232
Query: 253 HWGFWFYTI------GQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTI G PW+VV KD+ N+++V + +Y S
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASS 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E + K R+ + HV+ G+ V+ E + + GQ
Sbjct: 293 IHFTRDMPEEFTMEVTAKFRYRQPDSKVTV---HVK--GDKAEVI-FDEPQRAITPGQAV 346
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 347 VFYDGEECLGGGII 360
>gi|422880525|ref|ZP_16926988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1059]
gi|422929954|ref|ZP_16962894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis ATCC 29667]
gi|422930461|ref|ZP_16963392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK340]
gi|332363581|gb|EGJ41362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1059]
gi|339613587|gb|EGQ18323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis ATCC 29667]
gi|339621246|gb|EGQ25809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK340]
Length = 373
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/380 (35%), Positives = 197/380 (51%), Gaps = 20/380 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 1 MSDNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDIDEFGV-CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V DQ+ +L KD KDQTYFLS LSQ QL++ +FPLG
Sbjct: 118 TLGADYVATGHYAQV---KRDQDGLVHMLR-GKDNNKDQTYFLSQLSQEQLQKTMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR A + L +KDS GICF+G+ F EF+++++ G ++ E D +G+
Sbjct: 174 LEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRD-MGQ 232
Query: 253 HWGFWFYT------IGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YT +G PW+VV KD+ N+++V + +Y +
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E K R+ + ++ + AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAVVNFDQPQRAVTPGQAV 346
Query: 367 AFYQGTRCIGSGVILESWDD 386
FY G C+G G+I ++ D
Sbjct: 347 VFYDGDECLGGGLIDRAYKD 366
>gi|295692704|ref|YP_003601314.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus crispatus ST1]
gi|295030810|emb|CBL50289.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus ST1]
Length = 375
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 199/373 (53%), Gaps = 16/373 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W D C ED + K V D
Sbjct: 8 RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGV---CTATEDYEDVKKVAD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN++IKF +F++ ++ DY+
Sbjct: 65 KIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDADYI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYAK V + + + KD KDQTYFLS LSQ Q+ ++IFPL ++K +VR
Sbjct: 125 AMGHYAKTVKDANGVTH----MMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLTKPQVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A L +KDS GICF+G+ F +F++ + G ++ + G +G+H G +Y
Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPD-GKVVGEHAGLMYY 239
Query: 260 TIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL L PW+VV KD+K N + V + Y S + + + +G P
Sbjct: 240 TIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDMSFFTGKP 299
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
+ + C + + C++ + +N A V E + + GQ Y+G C
Sbjct: 300 DHDF-EMHCTAKF--RYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYKGEEC 356
Query: 375 IGSGVILESWDDQ 387
+G G I ++ ++
Sbjct: 357 LGGGNIDAAYQEE 369
>gi|227893351|ref|ZP_04011156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus ultunensis DSM 16047]
gi|227864766|gb|EEJ72187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus ultunensis DSM 16047]
Length = 375
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/372 (34%), Positives = 197/372 (52%), Gaps = 20/372 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W D C ED + K V D
Sbjct: 8 RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDAGV---CTATEDYEDVKKVAD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y + EY+ GRTPNPDV+CN++IKF +F+D ++ DY+
Sbjct: 65 KIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLDADYI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLEL--SKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A GHYAK V K ++ + KD KDQTYFLS LSQ Q++++IFPL ++K +
Sbjct: 125 AMGHYAKTVKD------KNGIVHMMRPKDGNKDQTYFLSQLSQDQIQKVIFPLANLTKPQ 178
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A L +KDS GICF+G+ F +F++ + G ++ + G +G+H G
Sbjct: 179 VREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPD-GKVVGEHAGLM 237
Query: 258 FYTIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+YTIGQRQGL L PW+VV KD+K N + V + Y S + + + +G
Sbjct: 238 YYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASHLKASDMSFFTG 297
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P + + C + + C++ + +N A V E + + GQ Y G
Sbjct: 298 QPDHDF-EMHCSAKF--RYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYNGE 354
Query: 373 RCIGSGVILESW 384
C+G G I ++
Sbjct: 355 ECLGGGNIDAAY 366
>gi|421895595|ref|ZP_16325995.1| probable trna
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Ralstonia solanacearum MolK2]
gi|206586760|emb|CAQ17345.1| probable trna
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Ralstonia solanacearum MolK2]
Length = 370
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 192/369 (52%), Gaps = 20/369 (5%)
Query: 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
G +V V LSGGVDSSV LL G+ ++K W +D + C +D +V
Sbjct: 3 GKRVVVGLSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
D + V +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D ++ D
Sbjct: 60 ADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAD 119
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+A+GHYA+V D ++ L + D KDQ+YFL L+QAQL R +FPLG I K
Sbjct: 120 TIATGHYARV--REVDGRFE---LLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTR 174
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + LPN +KDS GICF+G+ F +F+ R++ G I E G +G+H G
Sbjct: 175 VREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPE-GKTIGQHIGLA 233
Query: 258 FYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
FYT+GQR+G+ + G WYV KD+ N ++V + + L W++
Sbjct: 234 FYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVA 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G PP E + L K R+ C + DG +A SE + GQ A Y G
Sbjct: 294 GHPPAEGTHLAAKTRYRQADAPCT--VAGATDGALALA---FSEAQWAVTPGQSAVLYDG 348
Query: 372 TRCIGSGVI 380
C+G G+I
Sbjct: 349 DVCLGGGII 357
>gi|227509407|ref|ZP_03939456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus brevis subsp. gravesensis ATCC 27305]
gi|227191119|gb|EEI71186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus brevis subsp. gravesensis ATCC 27305]
Length = 374
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 203/377 (53%), Gaps = 17/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MQDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V +++ +P V+ EYW V +Y ++EY+ GRTP+PDV+CN IKF AF+D
Sbjct: 58 DVAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ + D++ +L S D KDQTYFLS LS QL R++FP+G
Sbjct: 118 ELGADYIATGHYAQL---TRDEDGHNHLLRAS-DGNKDQTYFLSQLSANQLDRVMFPIGN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ F +F+ ++ G ++ + G+ G+
Sbjct: 174 LVKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLPATPGKMMTVD-GEVKGQ 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + G PW+VV KD+K N+++V + Y++ +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKKNILYVGKGYHNELLYADYLEASDI 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ L + K R+ + H+ D G+ + V + + GQ
Sbjct: 293 HWVNNLDRGQDFHCTAKFRYRQKDTGVTV---HLSDDGQKVR-VDFDAPVRAITPGQAVV 348
Query: 368 FYQGTRCIGSGVILESW 384
FY G C+GS +I ++
Sbjct: 349 FYDGEECLGSAIIDAAY 365
>gi|366086097|ref|ZP_09452582.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus zeae KCTC 3804]
Length = 372
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 197/370 (53%), Gaps = 18/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 7 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVAS 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY+
Sbjct: 64 EIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFRAFLDYAEQLNADYI 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYA+V D++ +L D KDQTYFLS LSQ QLK+ +FP+G + K EVR
Sbjct: 124 AMGHYAQV---KTDEDGVIHMLR-GADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPEVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS GICF+G+ F +F++ ++ G ++ + G +G H G +Y
Sbjct: 180 KIAAAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEMGTHDGLMYY 238
Query: 260 TIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL + G PW+VV KD+ N+++V + + + +L W +G
Sbjct: 239 TIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTTGEA 298
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P E + + K R+ + + I + +DG A V E + + GQ FY G C
Sbjct: 299 PAEGTHMTAKFRYRQ--RDTGVTIRYHDDG---TATVDFDEPVRAITPGQAVVFYNGDEC 353
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 354 LGGGTIDAAY 363
>gi|332306349|ref|YP_004434200.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Glaciecola sp. 4H-3-7+YE-5]
gi|332173678|gb|AEE22932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Glaciecola sp. 4H-3-7+YE-5]
Length = 377
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/372 (36%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ +L G+ ++K W ++D + + C ED+K A+AV D
Sbjct: 19 KVIVGMSGGVDSSVSAYILLQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVAD 75
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A +E DY
Sbjct: 76 KLGIELHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFKAFLEFAAEELEADY 135
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D ++ + D KDQ+YFL L + + + +FP+G I K +V
Sbjct: 136 IATGHYVR--RREVDGHWQ---MLRGMDDNKDQSYFLYTLGEQHVGQTLFPIGDIEKPQV 190
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ KF++F+++++ GVI E G +G+H G +
Sbjct: 191 REIAQEQGLITHDKKDSTGICFIGERKFTDFLSQYLPAQPGVI-ETPEGQEIGQHQGLMY 249
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KD+ NV+ V + RLF G L
Sbjct: 250 HTLGQRKGLMIGGMKEFGDDPWYVVDKDMARNVLIVGQGA----DHPRLFSKGLVANQLH 305
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ + P + K R+ C+L ++ DG A V + + + GQ A F
Sbjct: 306 WVDRVGPTCAIKCSVKTRYRQEDIPCSLTLD--SDGS---ARVIFDQPQKAVTPGQSAVF 360
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 361 YLNEVCLGGGII 372
>gi|309807240|ref|ZP_07701212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 03V1-b]
gi|308166378|gb|EFO68585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 03V1-b]
Length = 375
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 199/377 (52%), Gaps = 16/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL + ++K W D C ED +
Sbjct: 1 MTDNSHIRVVVGMSGGVDSSVSALLLKEQRYDVVGVFMKNWDDTDDSGV---CTATEDFE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW V Y + EY+ GRTPNPD++CN IKF +F+D
Sbjct: 58 DVKRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK V D+ ++ KD KDQTYFLS ++Q QLK+ IFPL
Sbjct: 118 KLDADYIAMGHYAKTV---TDENGIVHMMR-PKDGNKDQTYFLSQVTQEQLKKAIFPLAD 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+SK +VR A Q L +KDS GICF+G+ F F++ + M G I+ ++ G +GK
Sbjct: 174 LSKPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTSD-GRIVGK 232
Query: 253 HWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR GL L G PW+VV K+++ N + V + Y S +
Sbjct: 233 HSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEV 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +GLP + + + C + + + + + +D N V+ E + + GQ
Sbjct: 293 SFFTGLPSNDTT-IHCTAKFRYRQPDVAVTVNYNKD--NNTVHVEFDELARAVTPGQAIV 349
Query: 368 FYQGTRCIGSGVILESW 384
FY G C+G +I +++
Sbjct: 350 FYDGEECLGGAIIDKAY 366
>gi|432801437|ref|ZP_20035419.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE84]
gi|431349550|gb|ELG36379.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE84]
Length = 368
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCTVKALDA----DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGVVCLGGGII 360
>gi|256850945|ref|ZP_05556334.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN]
gi|260661159|ref|ZP_05862073.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN]
gi|256616007|gb|EEU21195.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN]
gi|260548096|gb|EEX24072.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN]
Length = 375
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 199/380 (52%), Gaps = 16/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL AG+ ++K W D C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDDTDDAGV---CTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW+ V Y + EY+ GRTPNPD++CNT IKF +F++
Sbjct: 58 DVKRVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S++ DY+A GHYAK V + + KD KDQTYFLS LSQ Q+K +IFPL
Sbjct: 118 SLDADYIAMGHYAKTVKDKNGVTH----MMRPKDGNKDQTYFLSQLSQEQIKHVIFPLAN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K +VR+ A + L +KDS GICF+G+ F +F++ + G ++ + G+ +G
Sbjct: 174 LTKPQVREIAERAGLATAKKKDSTGICFIGERNFKKFLSEFLPAKPGKMVTPD-GNVVGN 232
Query: 253 HWGFWFYTIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD+K N + V + Y S + +
Sbjct: 233 HSGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGM 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +G P ++ C + + ++ + + V E + + GQ
Sbjct: 293 SFYTGNPDHDV-EFDCTAKF--RYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALV 349
Query: 368 FYQGTRCIGSGVILESWDDQ 387
Y+G C+G G I ++ ++
Sbjct: 350 LYKGEECLGGGNIDAAYQEE 369
>gi|300768828|ref|ZP_07078722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
gi|448821693|ref|YP_007414855.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus plantarum ZJ316]
gi|300493561|gb|EFK28735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
gi|448275190|gb|AGE39709.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus plantarum ZJ316]
Length = 379
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 203/381 (53%), Gaps = 17/381 (4%)
Query: 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDM 71
SM +V V +SGGVDSSV LL G+ ++K W D EN C ED
Sbjct: 5 SMTDHSNTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATEDY 61
Query: 72 KYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI 131
K V D++ +P ++ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D
Sbjct: 62 KDVAKVADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYA 121
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ DY+A+GHYA++ H D++ +L D KDQTYFLS L L++++FPLG
Sbjct: 122 MDLGADYIATGHYARLQH---DEDGTMHLLR-GVDSNKDQTYFLSQLDSKTLQKVMFPLG 177
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K +VRK A L +KDS GICF+G+ F EF+ ++ G ++ + G G
Sbjct: 178 EMVKPDVRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLPATPGKMMTFD-GQVKG 236
Query: 252 KHWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
+H G +YTIGQR+GL + G PW+VV KD+K N+++V + Y++ +
Sbjct: 237 EHAGLMYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHNPHLYATHLKASD 296
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L +++ + K R+ + + + +D E V + + + GQ
Sbjct: 297 LHFVTDEDLGNDFHVTAKFRYRQK--DSGVTVHFNDDHTE--VTVTFDDPVRAITPGQAV 352
Query: 367 AFYQGTRCIGSGVILESWDDQ 387
FY G C+GSG+I +++D+
Sbjct: 353 VFYNGEECLGSGMIDAAYNDE 373
>gi|162139594|ref|YP_216172.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|375114079|ref|ZP_09759249.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|71658017|sp|Q57QC0.2|MNMA_SALCH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|322714225|gb|EFZ05796.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 368
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGTEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YSGEVCLGGGII 360
>gi|373462956|ref|ZP_09554616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus kisonensis F0435]
gi|371765669|gb|EHO53975.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus kisonensis F0435]
Length = 374
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 198/377 (52%), Gaps = 17/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MQDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V + + +P V+ EYW V +Y ++EY+ GRTP+PDV+CN IKF AF+D
Sbjct: 58 DVAKVANTIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ + + L + D KDQTYFLS LS QL R++FP+G
Sbjct: 118 ELGADYIATGHYAQLTRDADGHNH----LLRASDGNKDQTYFLSQLSADQLDRVMFPIGN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K +VRK A + L D+KDS GICF+G+ F F+ ++ G ++ + G+ G
Sbjct: 174 MVKPDVRKIAREAGLATADKKDSVGICFIGEKNFKNFLGHYLPATPGKMMTVD-GEVKGN 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + G PW+VV KD+K N+++V + Y++ +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKQNILYVGKGYHNPLLYADYLEASDI 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ L + K R+ + H+ D G+++ V + + GQ
Sbjct: 293 HWVNNLDRGKDFHCTAKFRYRQKDTGVTV---HISDDGQSVR-VDFDAPVRAITPGQAVV 348
Query: 368 FYQGTRCIGSGVILESW 384
FY G C+GS +I ++
Sbjct: 349 FYDGDECLGSAIIDAAY 365
>gi|332525693|ref|ZP_08401842.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax benzoatilyticus JA2]
gi|332109252|gb|EGJ10175.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax benzoatilyticus JA2]
Length = 363
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/374 (38%), Positives = 199/374 (53%), Gaps = 28/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V LSGGVDS+V+ LL G+ ++K W +D + C +D A AV D
Sbjct: 6 RVVVGLSGGVDSAVSAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSSRQDFLDAAAVAD 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + LE V+ EY V + + EY GRTPNPDVLCN IKF AF+D + + +
Sbjct: 63 VIGIDLEHVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMRLGAERI 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V + EL K D KDQ+YFL L+QAQL R +FP+G + K E
Sbjct: 123 ATGHYARV-------RERDGRFELLKGLDPAKDQSYFLHRLNQAQLARTMFPVGELPKTE 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + LPN +KDS GICF+G+ F EF+ R++ + G I E E G +G+H G
Sbjct: 176 VRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYLAQAPGDI-EDERGRVVGRHVGLS 234
Query: 258 FYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKW 309
FYT+GQRQGL + G PWYV K+++ NV+ V + + R G W
Sbjct: 235 FYTLGQRQGLGIGGLKSGGGEHAPWYVARKELERNVLRVVQGHDHPWLLSRTLAAGDCAW 294
Query: 310 LSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
++G PP + L K R+ C L + GE + V+ +E + GQ A Y
Sbjct: 295 VAGTPPAD-GALAAKTRYRQADAACTLRRD-----GEAV-VLSFAEPQWAVTPGQSAVVY 347
Query: 370 QGTRCIGSGVILES 383
G C+G GVI S
Sbjct: 348 DGEVCLGGGVIESS 361
>gi|417647300|ref|ZP_12297142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU144]
gi|329724654|gb|EGG61160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU144]
Length = 372
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 208/381 (54%), Gaps = 25/381 (6%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
K ++V V +SGGVDSSV LL G+ ++K W D EN C ED
Sbjct: 3 NKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVI 59
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
AVC+Q+ +P V+ ++YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 60 AVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLG 119
Query: 136 FDYVASGHYAKV-VHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
DYVA+GHYA++ H E V D KDQTYFL+ LSQ QL +++FP+G I
Sbjct: 120 ADYVATGHYARIRRHDDGHVEMLRGV-----DNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR+ A + +L +KDS GICF+G+ F EF+++++ G +L G +G+H
Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGEMLTL-NGKKMGQHS 233
Query: 255 GFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
G +YTIGQR GL + G PW+VV K++ +NV++V + ++ D + + S S
Sbjct: 234 GLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYVEQGFHH-DALYSDYLIASD--YSF 290
Query: 313 LPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ P EI +C K R+ N+ E+ EN V +E + + GQ
Sbjct: 291 VNPSEIDLEKGFECTAKFRYRQKDTKVNVQREN-----ENSIRVTFAEPVRAITPGQAVV 345
Query: 368 FYQGTRCIGSGVILESWDDQG 388
FY C+G I + + ++G
Sbjct: 346 FYNQEVCLGGATIDDVYKNEG 366
>gi|146328716|ref|YP_001209536.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Dichelobacter nodosus VCS1703A]
gi|205816915|sp|A5EVB4.1|MNMA_DICNV RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|146232186|gb|ABQ13164.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Dichelobacter nodosus VCS1703A]
Length = 376
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/371 (37%), Positives = 203/371 (54%), Gaps = 23/371 (6%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
+G +AV +SGGVDSSV LL G+ ++K W +E F + + C ED++ A+
Sbjct: 10 QGSTIAVGMSGGVDSSVTAYLLKKQGYDVFGIFMKNW-EETFSSGY--CSAAEDLEDARD 66
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC +D+PL V+ +Y V ++EYR GRTPNPDVLCN IKF +
Sbjct: 67 VCQTLDIPLHTVNFVQQYHDRVFQLFLDEYRAGRTPNPDVLCNREIKFAELALYAQQLGA 126
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D++A+GHYA+ + S + + L D KDQ+YFL ++ AQL + IFPLG + K+
Sbjct: 127 DFLATGHYAQRLQSDNHE----AALFKGVDAQKDQSYFLHQITPAQLNKAIFPLGGLQKK 182
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
+VR A + L D+KDS GICF+G+ F F+ +++ +G +++ G+ +G+H G
Sbjct: 183 QVRAIARERGLTTFDKKDSTGICFIGERPFRAFLQQYLPAQKG-LMKTPNGEIVGEHMGL 241
Query: 257 WFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
+YTIGQRQGL + G PWYV+EKD+ NNV+ V + + R L G L WL
Sbjct: 242 MYYTIGQRQGLGIGGIAGASEEPWYVLEKDLSNNVLIVGQGDHPLLYHRVLI-AGQLSWL 300
Query: 311 SGLPPEEISRL-QCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
+ P R K R+ C +++ DG + QL + + GQ+A Y
Sbjct: 301 NEAPIA--GRFYHAKTRYRQSDQKCR--VDYAADGRLQLTFEQLQ---RAITLGQYAVIY 353
Query: 370 QGTRCIGSGVI 380
G RC+G GVI
Sbjct: 354 DGERCLGGGVI 364
>gi|167847243|ref|ZP_02472751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei B7210]
Length = 373
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 193/367 (52%), Gaps = 17/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + C +D +V D
Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D S+ +
Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V E L + D KDQ+YFL L+QAQL + +FPLG I K VR
Sbjct: 122 ATGHYARVRERDGRFE-----LLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ F +F+ R++ G ++ G +GKH G FY
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGP-MKTPDGKTVGKHIGLAFY 235
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T GQR+G+ L G PW+V KD+ +N ++V + + + R G++ W++G
Sbjct: 236 TFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAGE 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + +R K R+ C + G E ++V E + GQ A Y G
Sbjct: 296 PPADGARCGAKTRYRQADAPCAFG-RAAQAGDERFSLV-FDEPQWAVTPGQSAVLYDGDV 353
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 354 CLGGGII 360
>gi|104773839|ref|YP_618819.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|418035967|ref|ZP_12674405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|123077302|sp|Q1GAS1.1|MNMA_LACDA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|103422920|emb|CAI97582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
gi|354689126|gb|EHE89138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
Length = 375
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/380 (34%), Positives = 200/380 (52%), Gaps = 18/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D N C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNW---DDTNDDGVCTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW+ V Y ++EY+ GRTPNPD++CNT +KF +F++
Sbjct: 58 DVKKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK + E + + KD KDQTYFLS L+Q Q+KR++FPL
Sbjct: 118 DLDADYLAMGHYAKTMVD----ENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQD 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A + L N +KDS GICF+G+ F F++ + G ++ + G +G
Sbjct: 174 LTKPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPD-GKVVGH 232
Query: 253 HWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD++ N + V + Y S + +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGM 292
Query: 308 KWLSGLPPEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ +G P E+ + K R + C++ + A V E + + GQ
Sbjct: 293 TFFTGNPEEDTEFKATAKFR----YRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQAL 348
Query: 367 AFYQGTRCIGSGVILESWDD 386
Y G C+G G I ++ D
Sbjct: 349 VLYNGEECLGGGNIDAAFKD 368
>gi|377557347|ref|ZP_09786997.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus gastricus PS3]
gi|376165753|gb|EHS84694.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus gastricus PS3]
Length = 377
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/381 (34%), Positives = 203/381 (53%), Gaps = 16/381 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MTDNSQTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDDTD-EN--GVCTATEDFK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V Q+ +P V+ EYW V Y + EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 58 DVAKVATQIGIPYYSVNFEKEYWDRVFKYFLAEYKKGRTPNPDVVCNKEIKFKAFIEYAN 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA + D + K +++ +KD+ KDQTYFLS L AQL R++FPL
Sbjct: 118 QLGADYIATGHYADL---KRDADGKMHLMQ-AKDQNKDQTYFLSQLDHAQLDRVMFPLAN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKI-KFSEFVARHIGEMEGVILEAETGDFLG 251
+K E+R+ A + L N +KDS GICF+G+ F F+++++ G ++ G +G
Sbjct: 174 YTKPEIRQIAKEAGLVNAKKKDSVGICFIGEDGNFRNFLSQYLPAQPGE-MQTTDGKVVG 232
Query: 252 KHWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
+H G +YTIGQR+GL L G PW+VV KD N+++V + Y + +
Sbjct: 233 QHAGLMYYTIGQRKGLGLGGTKENNDPWFVVGKDQAQNILYVGQGYDNENLIATHLEASD 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ W+ +P + C + + + ++ +D ++ V+ E + + GQ
Sbjct: 293 IHWVDDVPATYGTTFHCTAKFRYRQKDVGVTVKLSDD--QSQVTVEFDEPARSITPGQAV 350
Query: 367 AFYQGTRCIGSGVILESWDDQ 387
FY G C+GS +I ++ +Q
Sbjct: 351 VFYDGQECLGSAIIDRAYHEQ 371
>gi|420177932|ref|ZP_14684266.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM057]
gi|420181422|ref|ZP_14687623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM053]
gi|420199857|ref|ZP_14705527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM031]
gi|394246338|gb|EJD91598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM053]
gi|394247119|gb|EJD92367.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM057]
gi|394271264|gb|EJE15760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM031]
Length = 372
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 206/379 (54%), Gaps = 21/379 (5%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
K ++V V +SGGVDSSV LL G+ ++K W D EN C ED
Sbjct: 3 NKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVI 59
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
AVC+Q+ +P V+ ++YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 60 AVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLG 119
Query: 136 FDYVASGHYAKV-VHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
DYVA+GHYA++ H E V D KDQTYFL+ LSQ QL +++FP+G I
Sbjct: 120 ADYVATGHYARIRRHEDGHVEMLRGV-----DNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR+ A + +L +KDS GICF+G+ F EF+++++ G +L G +G+H
Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGEMLTL-NGKKMGQHS 233
Query: 255 GFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
G +YTIGQR GL + G PW+VV K++ +NV++V + ++ D + + S S
Sbjct: 234 GLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYVEQGFHH-DALYSDYLIASD--FSF 290
Query: 313 LPPEEISR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
+ P EI +C + Y +V+ EN V +E + + GQ FY
Sbjct: 291 VNPSEIDLEKGFECTAKFR---YRQKDTKVYVQRENENSIRVTFAEPVRAITPGQAVVFY 347
Query: 370 QGTRCIGSGVILESWDDQG 388
C+G I + + ++G
Sbjct: 348 NQEVCLGGATIDDVYKNEG 366
>gi|297205825|ref|ZP_06923220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii JV-V16]
gi|297148951|gb|EFH29249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii JV-V16]
Length = 375
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 199/380 (52%), Gaps = 16/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL AG+ ++K W D C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDDTDDAGV---CTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW+ V Y + EY+ GRTPNPD++CNT IKF +F++
Sbjct: 58 DVKRVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S++ DY+A GHYAK V + + KD KDQTYFLS LSQ Q+K +IFPL
Sbjct: 118 SLDADYIAMGHYAKTVKDKNGVTH----MMRPKDGNKDQTYFLSQLSQEQIKHVIFPLAN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K +VR+ A + L +KDS GICF+G+ F +F++ + G ++ + G+ +G
Sbjct: 174 LTKPQVREIAERSGLATAKKKDSTGICFIGERNFKKFLSEFLPAKPGKMVTPD-GNVVGN 232
Query: 253 HWGFWFYTIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD+K N + V + Y S + +
Sbjct: 233 HSGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGM 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +G P ++ C + + ++ + + V E + + GQ
Sbjct: 293 SFYTGNPDHDV-EFDCTAKF--RYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALV 349
Query: 368 FYQGTRCIGSGVILESWDDQ 387
Y+G C+G G I ++ ++
Sbjct: 350 LYKGEECLGGGNIDAAYQEE 369
>gi|420367186|ref|ZP_14867983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 1235-66]
gi|391323388|gb|EIQ80039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri 1235-66]
Length = 368
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 204/375 (54%), Gaps = 35/375 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + G+ +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GEEIGQHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCN---LMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W+ P R K R+ C L E +E V E + GQ
Sbjct: 294 WVDRQPFTGTMRCTVKTRYRQTDIPCTVKALDAERIE--------VSFDEPVAAVTPGQS 345
Query: 366 AAFYQGTRCIGSGVI 380
A FY G C+G G+I
Sbjct: 346 AVFYNGEVCLGGGII 360
>gi|62127388|gb|AAX65091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
Length = 383
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKDGTEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALDD--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YSGEVCLGGGII 375
>gi|409250497|ref|YP_006886307.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|417475679|ref|ZP_12170434.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Rubislaw
str. A4-653]
gi|320086325|emb|CBY96098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|353643507|gb|EHC87675.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Rubislaw
str. A4-653]
Length = 383
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALDD--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YSGEVCLGGGII 375
>gi|261856534|ref|YP_003263817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halothiobacillus neapolitanus c2]
gi|261837003|gb|ACX96770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halothiobacillus neapolitanus c2]
Length = 377
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 204/374 (54%), Gaps = 21/374 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V LSGGVDSSVA L AG+ ++K W +D + + C + DM A +V D
Sbjct: 13 RVIVGLSGGVDSSVAALRLIEAGYQVEGLFMKNWEGDDNDEY---CAAKADMLDALSVAD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + V+ +YW V ++ ++EYR GRTPNPD+LCN IKF AF+D ++ DY+
Sbjct: 70 RLGIEFHFVNFAQDYWDRVFAHFLDEYRAGRTPNPDILCNREIKFRAFLDHARTLGADYI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V H+ D + +L+ D KDQ+YFL LS+ QL +FP+G + K EVR
Sbjct: 130 ATGHYARVQHALPDDSGETCLLK-GLDANKDQSYFLHALSREQLASALFPIGEMEKPEVR 188
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q +KDS GICF+G+ +FSEF+ ++ G I+ + G +G+H G ++
Sbjct: 189 RIAEQAGFKTATKKDSTGICFIGERRFSEFLKTYLPAQPGDIVTVD-GQVVGQHQGLMYH 247
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G PWYV K++ +N + V++ R G + W++
Sbjct: 248 TIGQRQGLGIGGLRDQGDQPWYVAGKNLGDNTLIVAQGQDHPALFAPALRAGQIHWIND- 306
Query: 314 PPEEIS----RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
P + + RL K+R+ C +M + + VV + + + GQ FY
Sbjct: 307 PTKLVGPYPLRLTAKIRYRQPDQPCTVMTI----SKDQLQVV-FDQPQRAITPGQSIVFY 361
Query: 370 QGTRCIGSGVILES 383
G C+G VI E+
Sbjct: 362 HGDVCLGGAVIEEA 375
>gi|456064109|ref|YP_007503079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta
proteobacterium CB]
gi|455441406|gb|AGG34344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta
proteobacterium CB]
Length = 384
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/380 (36%), Positives = 204/380 (53%), Gaps = 25/380 (6%)
Query: 10 SCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE 69
S ++P K KV V +SGGVDSSVA +L G+ ++K W +D + + C +
Sbjct: 19 SSAIPASKPSKVVVGMSGGVDSSVAAWMLKQQGYEVIGLFMKNWEDDDSDEY---CSARQ 75
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D +V D + + +E V+ EY + V + + EY GRTPNPDVLCN IKF AF+D
Sbjct: 76 DWLDVVSVADLIGIDVEAVNFAAEYRERVFAEFLREYAAGRTPNPDVLCNAEIKFKAFLD 135
Query: 130 AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFP 189
S+ D +A+GHYA+V H + L + D KDQ+YFL L+QAQL ++FP
Sbjct: 136 HAMSLGADAIATGHYARVRHHGGRVQ-----LLKALDASKDQSYFLHRLTQAQLTNVLFP 190
Query: 190 LGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDF 249
LG I K EVR+ A Q L N +KDS GICF+G+ F EF+ R++ G I E G
Sbjct: 191 LGEIPKTEVRQIAEQIGLHNARKKDSTGICFIGERPFREFLNRYLPRTPGPIKTPE-GKT 249
Query: 250 LGKHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNY-YSFDKKRRLF 302
+G+H G F+T+GQR+G+ L G WYV KDV NN ++V++ + + + +L
Sbjct: 250 VGEHMGLAFFTLGQRKGIGLGGSQDGNGDAWYVARKDVANNTLYVAQGHEHPWLLANQLT 309
Query: 303 RVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLS--EDDQGL 360
+ + W++G+ P + K R+ C+L G E +L+ E +
Sbjct: 310 AIDA-SWVAGVAPTP-GQYSAKTRYRQTDSACSLTA-----GAEGPLSFELAFPESQWAV 362
Query: 361 AAGQFAAFYQGTRCIGSGVI 380
GQ A Y G C+G G+I
Sbjct: 363 TPGQSAVLYDGDVCLGGGII 382
>gi|377556111|ref|ZP_09785834.1| tRNA-specific 2-thiouridylase MnmA [endosymbiont of Bathymodiolus
sp.]
Length = 360
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 210/371 (56%), Gaps = 29/371 (7%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
LKV V LSGGVDSSVA LL G A ++K W ++D + C ++D+ A+ V
Sbjct: 5 LKVIVGLSGGVDSSVAALLLIEQGFEVEALFMKNWEEDDTDG---HCTAQQDLSDAQKVA 61
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
D++ + L V+ + +YW +V + ++E++ GRTPNPDVLCN +IKF AF+D ++ D
Sbjct: 62 DKLGIKLHTVNFSSDYWDDVFEHFLQEHKKGRTPNPDVLCNQKIKFKAFLDYALNLGADK 121
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+++GHYA++ QE + L++ D KDQ+YFL L+Q QL + +FPLG I+K EV
Sbjct: 122 ISTGHYARIT-----QENEIFQLKVGLDNNKDQSYFLHLLNQHQLSKSLFPLGEINKNEV 176
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK AT+ ++KDS GICF+G+ FSEF+ ++ +G I++ E G F+ H G F
Sbjct: 177 RKIATENGFVTANKKDSTGICFIGERNFSEFLQTYLPTQQGDIVD-ENGQFIKHHQGLAF 235
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKR---RLFRVGSLKW 309
YTIGQR+GL + GG PW+V +K +++N + V + D R + + W
Sbjct: 236 YTIGQRKGLEIGGGFGTSGAPWFVADKRLESNELLVVQG----DNPRLYHQSLSASNPHW 291
Query: 310 LSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
++ P + + K+R+ +C + E GE ++ ++ + + GQ FY
Sbjct: 292 ITATPTFPL-KCMAKIRYRQVSQDCTIS----EQDGE--IKIKFNQPQRAITPGQSVVFY 344
Query: 370 QGTRCIGSGVI 380
C+G +I
Sbjct: 345 AQDVCLGGAII 355
>gi|375119382|ref|ZP_09764549.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|375123861|ref|ZP_09769025.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|417389548|ref|ZP_12153311.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
gi|417511481|ref|ZP_12176088.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Senftenberg
str. A4-543]
gi|326623649|gb|EGE29994.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|326628111|gb|EGE34454.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|353621501|gb|EHC71311.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
gi|353642899|gb|EHC87224.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Senftenberg
str. A4-543]
Length = 383
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALDD--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YSGEVCLGGGII 375
>gi|312109803|ref|YP_003988119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y4.1MC1]
gi|423718843|ref|ZP_17693025.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus thermoglucosidans TNO-09.020]
gi|311214904|gb|ADP73508.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y4.1MC1]
gi|383367746|gb|EID45021.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus thermoglucosidans TNO-09.020]
Length = 370
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 207/379 (54%), Gaps = 42/379 (11%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W D N C ED + K V +
Sbjct: 5 RVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNW---DDTNDDGVCTATEDYEDVKRVAN 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EYW V +Y ++E + GRTPNPDVLCNT IKF AF+D S++ DY+
Sbjct: 62 QLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDADYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ +E L KD KDQTYFLS L++ L +++FPLG ++K+EVR
Sbjct: 122 ATGHYARI-----RRENGQVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGELTKDEVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A + +L ++KDS GICF+G+ F F+ + G I + G+ LG H G +Y
Sbjct: 177 KIAKELNLVTANKKDSTGICFIGERNFKRFLKNFLPAQPGEIRSLD-GEVLGTHDGLMYY 235
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVS--RNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQR+GL + G PWYVV+KD++NNV+ V+ +N+ + + +GL
Sbjct: 236 TIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPAL-------------FSTGL 282
Query: 314 PPEEISRLQCKVRHGPGFYNCNL----------MIEHVEDGGENIAVVQLSEDDQGLAAG 363
IS + VR P + C + HV G A+V+ + + + G
Sbjct: 283 IASNISFINGDVR--PRTFACTAKFRYRQEDQKVTVHVRPNG--TALVEFEKPVKAVTPG 338
Query: 364 QFAAFYQGTRCIGSGVILE 382
Q A FY C+GS VI E
Sbjct: 339 QVAVFYDNDVCLGSAVIDE 357
>gi|168239141|ref|ZP_02664199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194738212|ref|YP_002114241.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194713714|gb|ACF92935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197288113|gb|EDY27500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
Length = 368
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YSGEVCLGGGII 360
>gi|417358624|ref|ZP_12133482.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Give str.
S5-487]
gi|417382326|ref|ZP_12148322.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353590758|gb|EHC49196.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Give str.
S5-487]
gi|353615182|gb|EHC66788.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
Length = 383
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALDD--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YSGEVCLGGGII 375
>gi|299535696|ref|ZP_07049017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lysinibacillus fusiformis ZC1]
gi|424739079|ref|ZP_18167501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lysinibacillus fusiformis ZB2]
gi|298728896|gb|EFI69450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lysinibacillus fusiformis ZC1]
gi|422946944|gb|EKU41346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lysinibacillus fusiformis ZB2]
Length = 374
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 203/373 (54%), Gaps = 25/373 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V V +SGGVDSSVA LL G+ ++K W D EN C ED VC
Sbjct: 10 IRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDDTD-EN--GVCTATEDYDDVIKVC 66
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+Q+ +P V+ +YW V +Y +EEY+ GRTPNPDV+CN IKF AF++ ++ DY
Sbjct: 67 NQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMNLGADY 126
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA+ + + D E + + D KDQTYFL+ LSQ QL ++FP+G I K+EV
Sbjct: 127 LATGHYAR-IDRNGDGEVR---MLRGVDDNKDQTYFLNQLSQEQLAHVMFPIGDIEKKEV 182
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A + L +KDS GICF+G+ F EF+++++ G +E G +G+H G +
Sbjct: 183 RKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQYLPAQPGK-METMDGVVMGQHDGLMY 241
Query: 259 YTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSR---NYYSFDKKRRLFRVG--SLKWLS 311
YT+GQR GL + G PW+V+ KD+ NV+ V + N YS+ ++ S K L
Sbjct: 242 YTLGQRHGLGIGGDGEPWFVLGKDLARNVLLVGQGFDNEYSYSTSLTAVKMNYTSTKKLP 301
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G + C + + + +E + DG +I +E + + GQ Y G
Sbjct: 302 G-------KFSCTAKFRYRQTDTPVEVEILPDGRAHIT---FAEPVRAITPGQAVVLYNG 351
Query: 372 TRCIGSGVILESW 384
C+G G I E +
Sbjct: 352 EECMGGGTIDEVF 364
>gi|222155880|ref|YP_002556019.1| hypothetical protein LF82_1359 [Escherichia coli LF82]
gi|387616434|ref|YP_006119456.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O83:H1 str.
NRG 857C]
gi|419699979|ref|ZP_14227591.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SCI-07]
gi|432731886|ref|ZP_19966721.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE45]
gi|432758964|ref|ZP_19993463.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE46]
gi|222032885|emb|CAP75625.1| hypothetical protein LF82_1359 [Escherichia coli LF82]
gi|312945695|gb|ADR26522.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O83:H1 str.
NRG 857C]
gi|380349085|gb|EIA37361.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SCI-07]
gi|431276948|gb|ELF67963.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE45]
gi|431310282|gb|ELF98474.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE46]
Length = 368
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIALQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCTVKALDA----DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|269120194|ref|YP_003308371.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Sebaldella termitidis ATCC 33386]
gi|268614072|gb|ACZ08440.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Sebaldella termitidis ATCC 33386]
Length = 359
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 204/369 (55%), Gaps = 22/369 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W + D EN CP +ED K AV +
Sbjct: 4 RVVLGMSGGVDSSVAAILLKEQGYEVIGVFMKNWDETD-EN--GVCPADEDYKDVIAVAE 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+DVP V+ EYW V +Y ++EYR GRTPNPDV+CN IKF AF+D + DY+
Sbjct: 61 QLDVPYYSVNFVKEYWDRVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLDYAVKIGADYI 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ S K +L D KDQTYFL LSQ QL ++IFP+G +K+++R
Sbjct: 121 ATGHYARIERDSG----KVRLLR-GLDDNKDQTYFLCQLSQEQLDKVIFPIGEYNKKDIR 175
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A +++L +KDS GICF+G+ F+EF+ R++ G I+ A+ G+ LG H G Y
Sbjct: 176 AIAEKYNLKTAKKKDSTGICFIGERDFAEFLNRYLPAKPGKIVTAD-GENLGNHVGLMHY 234
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQR+G+ + G PW+V +KD++ N + V + D ++ + + +
Sbjct: 235 TIGQRKGIGIGNTKDGSGEPWFVADKDLEKNELIVVQ---GGDHEKLYSKALIADNFNFI 291
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
E+ L+C + Y + VE G + V + ++ + GQ Y
Sbjct: 292 NKRELP-LKCTAKFR---YRQKDVGVTVEKAGTDSYRVTFDKPEKAVTLGQIVVLYDNEE 347
Query: 374 CIGSGVILE 382
C+G G+I E
Sbjct: 348 CLGGGIIKE 356
>gi|215486387|ref|YP_002328818.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O127:H6 str.
E2348/69]
gi|417755144|ref|ZP_12403233.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC2B]
gi|418996279|ref|ZP_13543884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC1A]
gi|419001494|ref|ZP_13549040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC1B]
gi|419006976|ref|ZP_13554427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC1C]
gi|419012933|ref|ZP_13560293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC1D]
gi|419017788|ref|ZP_13565105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC1E]
gi|419023426|ref|ZP_13570663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC2A]
gi|419034939|ref|ZP_13582029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC2D]
gi|419039033|ref|ZP_13586083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC2E]
gi|215264459|emb|CAS08822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli O127:H6 str. E2348/69]
gi|377846880|gb|EHU11885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC1A]
gi|377848768|gb|EHU13747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC1C]
gi|377851749|gb|EHU16685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC1B]
gi|377860565|gb|EHU25389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC1D]
gi|377864177|gb|EHU28974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC1E]
gi|377866551|gb|EHU31317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC2A]
gi|377877097|gb|EHU41694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC2B]
gi|377881256|gb|EHU45818.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC2D]
gi|377896509|gb|EHU60904.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli DEC2E]
Length = 368
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCTVKALDA----DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|430805174|ref|ZP_19432289.1| tRNA-specific 2-thiouridylase MnmA [Cupriavidus sp. HMR-1]
gi|429502566|gb|ELA00875.1| tRNA-specific 2-thiouridylase MnmA [Cupriavidus sp. HMR-1]
Length = 359
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/371 (36%), Positives = 195/371 (52%), Gaps = 23/371 (6%)
Query: 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
G +V V LSGGVDSSV LL G+ ++K W +D + C +D +V
Sbjct: 3 GKRVVVGLSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWLDVASV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
D + V +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D S+ D
Sbjct: 60 ADVIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAD 119
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
+A+GHYA+V ++ + EL K D KDQ+YFL L+QAQL R +FPLG I K
Sbjct: 120 TIATGHYARVRQAANGK------FELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPK 173
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
VR+ A + LPN +KDS GICF+G+ F +F+ R++ G ++ E G +G+H G
Sbjct: 174 TRVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTQPGPMMTPE-GKVVGEHIG 232
Query: 256 FWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKW 309
FYT+GQR+G+ L G WYV KD+ +N ++V + + L W
Sbjct: 233 LAFYTLGQRKGIGLGGSRDGSGDAWYVARKDMASNTLYVVQGHDHPWLLTSELNAADLSW 292
Query: 310 LSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
++G PP + + K R+ C ++ G+ + + +E + GQ A Y
Sbjct: 293 VAGEPPAAGATMAAKTRYRQSDAPCKVVAAE----GDALK-LSFAEPQWAVTPGQSAVLY 347
Query: 370 QGTRCIGSGVI 380
G C+G G+I
Sbjct: 348 DGDVCLGGGII 358
>gi|315038064|ref|YP_004031632.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
1112]
gi|325956515|ref|YP_004291927.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC]
gi|385817406|ref|YP_005853796.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus
GRL1118]
gi|312276197|gb|ADQ58837.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
1112]
gi|325333080|gb|ADZ06988.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC]
gi|327183344|gb|AEA31791.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus
GRL1118]
Length = 375
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/377 (34%), Positives = 198/377 (52%), Gaps = 16/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDAGV---CTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW V Y + EY+ GRTPNPDV+CN++IKF +F++
Sbjct: 58 DVKKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK V + + + KD KDQTYFLS L+Q Q+K++IFPL
Sbjct: 118 DLDADYIAMGHYAKTVKDANGVTH----MMRPKDGNKDQTYFLSQLNQDQIKKVIFPLAN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K +VR+ A L +KDS GICF+G+ F +F++ + G ++ + G +G+
Sbjct: 174 LTKPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPD-GKVVGE 232
Query: 253 HWGFWFYTIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD+K N + V + Y S + +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDM 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +G P + + C + + C++ + +N A V E + + GQ
Sbjct: 293 SFFTGKPDHDF-EMHCSAKF--RYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALV 349
Query: 368 FYQGTRCIGSGVILESW 384
Y G C+G G I ++
Sbjct: 350 LYNGEECLGGGNIDAAY 366
>gi|422382841|ref|ZP_16462996.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 57-2]
gi|324005950|gb|EGB75169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 57-2]
Length = 383
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIALQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTMRCTVKTRYRQTDIPCTVKALD----ADRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|227512195|ref|ZP_03942244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus buchneri ATCC 11577]
gi|227084589|gb|EEI19901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus buchneri ATCC 11577]
Length = 374
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 203/377 (53%), Gaps = 17/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MQDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V +++ +P V+ EYW V +Y ++EY+ GRTP+PDV+CN IKF AF+D
Sbjct: 58 DVAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ + D++ +L S D KDQTYFLS LS QL R++FP+G
Sbjct: 118 ELGADYIATGHYAQL---TRDEDGHNHLLRAS-DGNKDQTYFLSQLSANQLDRVMFPIGN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ F +F+ ++ G ++ + G+ G+
Sbjct: 174 LVKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLPATPGKMMTVD-GEVKGQ 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + G PW+V+ KD+K N+++V + Y++ +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDI 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ L + K R+ + H+ D G+ + V + + GQ
Sbjct: 293 HWVNNLDRGQDFHCTAKFRYRQKDTGVTV---HLSDDGQKVR-VDFDAPVRAITPGQAVV 348
Query: 368 FYQGTRCIGSGVILESW 384
FY G C+GS +I ++
Sbjct: 349 FYDGEECLGSAIIDAAY 365
>gi|16760109|ref|NP_455726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142120|ref|NP_805462.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56413780|ref|YP_150855.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|161614531|ref|YP_001588496.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168233116|ref|ZP_02658174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|168244308|ref|ZP_02669240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
gi|168467196|ref|ZP_02701038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|168822341|ref|ZP_02834341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|194444280|ref|YP_002040490.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194449928|ref|YP_002045236.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194472097|ref|ZP_03078081.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|197249278|ref|YP_002146807.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197362703|ref|YP_002142340.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198245672|ref|YP_002215901.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|204930753|ref|ZP_03221626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|205353032|ref|YP_002226833.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207857259|ref|YP_002243910.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213428090|ref|ZP_03360840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhi str.
E02-1180]
gi|213580464|ref|ZP_03362290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhi str.
E98-0664]
gi|213612639|ref|ZP_03370465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhi str.
E98-2068]
gi|213648222|ref|ZP_03378275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhi str.
J185]
gi|224584258|ref|YP_002638056.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|378954775|ref|YP_005212262.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|378959852|ref|YP_005217338.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|386591096|ref|YP_006087496.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Heidelberg
str. B182]
gi|416422183|ref|ZP_11690087.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416431264|ref|ZP_11695487.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416441319|ref|ZP_11701531.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416444174|ref|ZP_11703528.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416451962|ref|ZP_11708629.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459026|ref|ZP_11713535.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416467765|ref|ZP_11717614.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416479517|ref|ZP_11722326.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416484577|ref|ZP_11724265.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416497412|ref|ZP_11729680.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416507382|ref|ZP_11735330.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416523537|ref|ZP_11741172.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416528526|ref|ZP_11743976.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416535582|ref|ZP_11747836.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416541582|ref|ZP_11751069.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416553888|ref|ZP_11757916.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416558006|ref|ZP_11759949.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416571628|ref|ZP_11766862.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416576284|ref|ZP_11768971.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416585922|ref|ZP_11775222.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416590996|ref|ZP_11778171.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416599033|ref|ZP_11783384.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416607888|ref|ZP_11788882.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416611155|ref|ZP_11790585.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416623330|ref|ZP_11797350.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416629104|ref|ZP_11799868.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416639458|ref|ZP_11804527.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416650756|ref|ZP_11810521.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416665992|ref|ZP_11817143.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416685686|ref|ZP_11825044.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416692854|ref|ZP_11826527.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416707239|ref|ZP_11832337.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416714537|ref|ZP_11837855.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416717030|ref|ZP_11839311.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416725218|ref|ZP_11845588.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416733369|ref|ZP_11850415.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416736084|ref|ZP_11851801.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416750061|ref|ZP_11859551.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416759828|ref|ZP_11864636.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416761888|ref|ZP_11865938.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416767271|ref|ZP_11869768.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|417326918|ref|ZP_12112476.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Adelaide
str. A4-669]
gi|417366076|ref|ZP_12138497.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417373973|ref|ZP_12143868.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Inverness
str. R8-3668]
gi|417416107|ref|ZP_12159602.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Mississippi
str. A4-633]
gi|417518860|ref|ZP_12181137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Uganda str.
R8-3404]
gi|418485939|ref|ZP_13054921.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418490965|ref|ZP_13057495.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418495426|ref|ZP_13061868.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418499280|ref|ZP_13065689.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418503159|ref|ZP_13069528.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418506430|ref|ZP_13072762.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418512658|ref|ZP_13078898.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418527019|ref|ZP_13092976.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418761287|ref|ZP_13317432.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418768385|ref|ZP_13324435.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418769783|ref|ZP_13325810.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418775977|ref|ZP_13331926.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418780319|ref|ZP_13336208.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418786498|ref|ZP_13342313.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418789833|ref|ZP_13345619.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418795688|ref|ZP_13351389.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418798426|ref|ZP_13354103.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418802443|ref|ZP_13358070.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418808774|ref|ZP_13364327.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418812930|ref|ZP_13368451.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418816987|ref|ZP_13372475.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418820429|ref|ZP_13375862.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418832857|ref|ZP_13387791.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418836326|ref|ZP_13391213.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418839564|ref|ZP_13394398.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418848118|ref|ZP_13402857.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418855520|ref|ZP_13410176.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418858534|ref|ZP_13413148.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418863933|ref|ZP_13418469.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418868695|ref|ZP_13423136.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419729308|ref|ZP_14256266.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419736392|ref|ZP_14263243.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419737744|ref|ZP_14264516.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419744072|ref|ZP_14270731.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419749204|ref|ZP_14275690.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|419788383|ref|ZP_14314070.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419791091|ref|ZP_14316746.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421358273|ref|ZP_15808571.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421364462|ref|ZP_15814694.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421366749|ref|ZP_15816951.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421373429|ref|ZP_15823569.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421377186|ref|ZP_15827285.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421381685|ref|ZP_15831740.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421385365|ref|ZP_15835387.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421390307|ref|ZP_15840282.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421393567|ref|ZP_15843511.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421398387|ref|ZP_15848295.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421404199|ref|ZP_15854043.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421409710|ref|ZP_15859500.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421413433|ref|ZP_15863187.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421418745|ref|ZP_15868446.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421422421|ref|ZP_15872089.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421426342|ref|ZP_15875970.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421432907|ref|ZP_15882475.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421434912|ref|ZP_15884458.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421442196|ref|ZP_15891656.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421444487|ref|ZP_15893917.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421448208|ref|ZP_15897603.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421569522|ref|ZP_16015225.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421573528|ref|ZP_16019163.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421578726|ref|ZP_16024300.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421582572|ref|ZP_16028108.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|421884801|ref|ZP_16316006.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|436587480|ref|ZP_20511819.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436776518|ref|ZP_20521029.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436798193|ref|ZP_20523338.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436809172|ref|ZP_20528552.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436815073|ref|ZP_20532624.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436844496|ref|ZP_20538254.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436854173|ref|ZP_20543807.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436857429|ref|ZP_20545949.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436864602|ref|ZP_20550569.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436873834|ref|ZP_20556558.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436877968|ref|ZP_20558823.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436888491|ref|ZP_20564820.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436895726|ref|ZP_20568482.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436901608|ref|ZP_20572518.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436912353|ref|ZP_20578182.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436922285|ref|ZP_20584510.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436926977|ref|ZP_20586803.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436936304|ref|ZP_20591744.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436943494|ref|ZP_20596440.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436951018|ref|ZP_20600073.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436961657|ref|ZP_20605031.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436970749|ref|ZP_20609142.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436982089|ref|ZP_20613585.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436994728|ref|ZP_20618996.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437001777|ref|ZP_20621056.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437020031|ref|ZP_20627182.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437033910|ref|ZP_20632794.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437045609|ref|ZP_20637907.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437053822|ref|ZP_20642621.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437058824|ref|ZP_20645671.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437070353|ref|ZP_20651531.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437076513|ref|ZP_20654876.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437081124|ref|ZP_20657576.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437091713|ref|ZP_20663313.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437101925|ref|ZP_20666374.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437122770|ref|ZP_20672574.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437131118|ref|ZP_20677248.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437138870|ref|ZP_20681352.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437145725|ref|ZP_20685632.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437156770|ref|ZP_20692306.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437159237|ref|ZP_20693751.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437166098|ref|ZP_20697883.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437178739|ref|ZP_20704857.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437183883|ref|ZP_20707955.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437204087|ref|ZP_20712152.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437258712|ref|ZP_20716632.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437268281|ref|ZP_20721751.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437277119|ref|ZP_20726638.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437286189|ref|ZP_20729969.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437312198|ref|ZP_20736306.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437328124|ref|ZP_20740906.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437343651|ref|ZP_20745819.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437404143|ref|ZP_20752001.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437443978|ref|ZP_20758144.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437460574|ref|ZP_20761528.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437481377|ref|ZP_20768909.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437494615|ref|ZP_20772558.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437503916|ref|ZP_20774930.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437524518|ref|ZP_20779432.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437560998|ref|ZP_20786282.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437577662|ref|ZP_20791011.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437586362|ref|ZP_20793323.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437601759|ref|ZP_20797991.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437612731|ref|ZP_20801357.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437627640|ref|ZP_20805915.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437658111|ref|ZP_20811442.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437669498|ref|ZP_20815530.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437688558|ref|ZP_20819866.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437709432|ref|ZP_20826100.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437738162|ref|ZP_20833117.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437797948|ref|ZP_20837729.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437815184|ref|ZP_20842454.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437870700|ref|ZP_20848380.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|437976480|ref|ZP_20853028.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438087102|ref|ZP_20859249.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438099799|ref|ZP_20863543.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438110663|ref|ZP_20868061.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438144674|ref|ZP_20875665.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|440761748|ref|ZP_20940817.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440767580|ref|ZP_20946556.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440774029|ref|ZP_20952917.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445131164|ref|ZP_21381663.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445142392|ref|ZP_21386078.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445158948|ref|ZP_21393232.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445169181|ref|ZP_21395120.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445228801|ref|ZP_21404838.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445242217|ref|ZP_21407774.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445328308|ref|ZP_21412914.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445353179|ref|ZP_21421071.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445363826|ref|ZP_21424749.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|452120597|ref|YP_007470845.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|24638320|sp|Q8Z7G9.1|MNMA_SALTI RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|71658018|sp|Q5PMJ4.1|MNMA_SALPA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205816911|sp|A9N4K8.1|MNMA_SALPB RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|25298380|pir||AC0647 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
2.1.1.61) [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16502403|emb|CAD08358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29137749|gb|AAO69311.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
[Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|56128037|gb|AAV77543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|161363895|gb|ABX67663.1| hypothetical protein SPAB_02280 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402943|gb|ACF63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194408232|gb|ACF68451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|194458461|gb|EDX47300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|195630429|gb|EDX49055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|197094180|emb|CAR59684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
gi|197212981|gb|ACH50378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|197940188|gb|ACH77521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|204320212|gb|EDZ05416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|205272813|emb|CAR37739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|205332653|gb|EDZ19417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|205336786|gb|EDZ23550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
gi|205341217|gb|EDZ27981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|206709062|emb|CAR33395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|224468785|gb|ACN46615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
gi|322616610|gb|EFY13519.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619875|gb|EFY16749.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622443|gb|EFY19288.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629439|gb|EFY26216.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632935|gb|EFY29678.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636820|gb|EFY33523.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641380|gb|EFY38019.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322645145|gb|EFY41674.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322652308|gb|EFY48664.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655660|gb|EFY51962.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660965|gb|EFY57195.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665449|gb|EFY61637.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667574|gb|EFY63735.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673632|gb|EFY69734.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677558|gb|EFY73622.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679777|gb|EFY75816.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687250|gb|EFY83222.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323193058|gb|EFZ78280.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199445|gb|EFZ84538.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203633|gb|EFZ88655.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323217800|gb|EGA02515.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323218889|gb|EGA03400.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226637|gb|EGA10837.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229603|gb|EGA13726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232828|gb|EGA16924.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240136|gb|EGA24180.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242877|gb|EGA26898.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323246793|gb|EGA30763.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323254307|gb|EGA38124.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255573|gb|EGA39332.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323259407|gb|EGA43043.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267003|gb|EGA50488.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323272107|gb|EGA55521.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|353571920|gb|EHC35717.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Adelaide
str. A4-669]
gi|353592878|gb|EHC50776.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353600961|gb|EHC56701.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Inverness
str. R8-3668]
gi|353620891|gb|EHC70863.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Mississippi
str. A4-633]
gi|353648182|gb|EHC91136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Uganda str.
R8-3404]
gi|357205386|gb|AET53432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|363549690|gb|EHL34023.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363553392|gb|EHL37640.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363553843|gb|EHL38089.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363562074|gb|EHL46180.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363565790|gb|EHL49814.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363574158|gb|EHL58031.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|363577573|gb|EHL61393.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|366055829|gb|EHN20164.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366059282|gb|EHN23556.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366063730|gb|EHN27942.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366071815|gb|EHN35909.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366074883|gb|EHN38945.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366083150|gb|EHN47077.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366083486|gb|EHN47407.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366827638|gb|EHN54536.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372204488|gb|EHP18015.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|374353724|gb|AEZ45485.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|379985515|emb|CCF88279.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|381292531|gb|EIC33734.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381296882|gb|EIC37981.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381304266|gb|EIC45273.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381310331|gb|EIC51162.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381312211|gb|EIC53019.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|383798140|gb|AFH45222.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Salmonella enterica subsp. enterica serovar Heidelberg
str. B182]
gi|392617567|gb|EIW99988.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392621313|gb|EIX03675.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392731655|gb|EIZ88879.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392739229|gb|EIZ96368.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392740905|gb|EIZ98020.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392746610|gb|EJA03616.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392748168|gb|EJA05158.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392749369|gb|EJA06346.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392758216|gb|EJA15091.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392760178|gb|EJA17018.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392767083|gb|EJA23855.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392774156|gb|EJA30851.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392775457|gb|EJA32149.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392777456|gb|EJA34139.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392789155|gb|EJA45675.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392792698|gb|EJA49152.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392796927|gb|EJA53255.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392802152|gb|EJA58372.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392812441|gb|EJA68430.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392821578|gb|EJA77402.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392823430|gb|EJA79226.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392831782|gb|EJA87409.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392832505|gb|EJA88125.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392837385|gb|EJA92955.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|395983951|gb|EJH93141.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395988577|gb|EJH97733.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395989404|gb|EJH98538.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395996548|gb|EJI05593.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396000808|gb|EJI09822.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396001648|gb|EJI10660.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396014117|gb|EJI23003.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396016802|gb|EJI25669.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396017450|gb|EJI26315.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396025007|gb|EJI33791.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396027279|gb|EJI36043.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396031460|gb|EJI40187.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396038023|gb|EJI46667.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396040521|gb|EJI49145.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396041736|gb|EJI50359.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396049123|gb|EJI57666.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396053849|gb|EJI62342.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396059293|gb|EJI67748.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396062873|gb|EJI71284.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396066918|gb|EJI75278.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396073808|gb|EJI82108.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|402524239|gb|EJW31544.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402527364|gb|EJW34627.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402527374|gb|EJW34636.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402533039|gb|EJW40224.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|434939009|gb|ELL45894.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434960685|gb|ELL54043.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434961007|gb|ELL54335.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434966989|gb|ELL59824.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434973189|gb|ELL65577.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434979082|gb|ELL71074.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434981522|gb|ELL73401.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434982976|gb|ELL74784.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434989581|gb|ELL81131.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434995637|gb|ELL86953.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|434998591|gb|ELL89812.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435007905|gb|ELL98732.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435010201|gb|ELM00987.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435015615|gb|ELM06141.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435021042|gb|ELM11431.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435024603|gb|ELM14809.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435026598|gb|ELM16729.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435036818|gb|ELM26637.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435039142|gb|ELM28923.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435043693|gb|ELM33410.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435050796|gb|ELM40300.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435051485|gb|ELM40987.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435057038|gb|ELM46407.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435063959|gb|ELM53106.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435066343|gb|ELM55431.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435074648|gb|ELM63472.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435076800|gb|ELM65582.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435079668|gb|ELM68363.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435079897|gb|ELM68591.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435088836|gb|ELM77291.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435090324|gb|ELM78726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435094637|gb|ELM82976.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435105810|gb|ELM93847.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435111743|gb|ELM99631.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435112619|gb|ELN00484.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435122826|gb|ELN10332.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435123904|gb|ELN11395.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435125092|gb|ELN12548.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435132392|gb|ELN19590.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435135377|gb|ELN22486.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435137186|gb|ELN24257.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435150170|gb|ELN36854.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435152156|gb|ELN38786.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435153455|gb|ELN40063.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435162082|gb|ELN48282.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435165959|gb|ELN51961.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435173305|gb|ELN58815.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435174460|gb|ELN59902.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435183330|gb|ELN68305.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435184716|gb|ELN69637.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435191358|gb|ELN75924.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435191428|gb|ELN75985.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435205561|gb|ELN89150.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435210678|gb|ELN93916.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435211060|gb|ELN94268.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435217792|gb|ELO00207.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435220866|gb|ELO03140.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435227132|gb|ELO08655.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435236443|gb|ELO17178.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435238324|gb|ELO18973.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435242604|gb|ELO22908.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435248878|gb|ELO28726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435260320|gb|ELO39531.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435260771|gb|ELO39961.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435265304|gb|ELO44185.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435270806|gb|ELO49291.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435282105|gb|ELO59741.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435282672|gb|ELO60286.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435284410|gb|ELO61896.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435285793|gb|ELO63157.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435288608|gb|ELO65616.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435289553|gb|ELO66506.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435295429|gb|ELO71891.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435318310|gb|ELO91251.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435325397|gb|ELO97262.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435331870|gb|ELP02968.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|435335069|gb|ELP05414.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|435339029|gb|ELP08099.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|436413547|gb|ELP11480.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436419489|gb|ELP17364.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436424528|gb|ELP22299.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|444845214|gb|ELX70426.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444849817|gb|ELX74926.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444851004|gb|ELX76100.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444863689|gb|ELX88506.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444865973|gb|ELX90729.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444873356|gb|ELX97657.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444880085|gb|ELY04169.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444883537|gb|ELY07416.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|444890882|gb|ELY14177.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|451909601|gb|AGF81407.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 368
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YSGEVCLGGGII 360
>gi|312966389|ref|ZP_07780611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 2362-75]
gi|312288842|gb|EFR16740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 2362-75]
Length = 368
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGISGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCTVKALDA----DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|421890771|ref|ZP_16321618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia solanacearum K60-1]
gi|378963884|emb|CCF98366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia solanacearum K60-1]
Length = 370
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 192/369 (52%), Gaps = 20/369 (5%)
Query: 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
G +V V +SGGVDSSV LL G+ ++K W +D + C +D +V
Sbjct: 3 GKRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
D + V +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D ++ D
Sbjct: 60 ADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAD 119
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+A+GHYA+V D ++ L + D KDQ+YFL L+QAQL R +FPLG I K
Sbjct: 120 TIATGHYARV--REVDGRFE---LLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTR 174
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + LPN +KDS GICF+G+ F +F+ R++ G I E G +G+H G
Sbjct: 175 VREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPE-GKTIGQHIGLA 233
Query: 258 FYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
FYT+GQR+G+ + G WYV KD+ N ++V + + L W++
Sbjct: 234 FYTLGQRKGIGIGGSRDGNGDAWYVARKDIAANTLYVVQGHDHPWLLAHTVHADDLSWVA 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G PP E + L K R+ C + DG +A +E + GQ A Y G
Sbjct: 294 GHPPAEGTHLAAKTRYRQADAPCT--VARATDGALALA---FAEAQWAVTPGQSAVLYDG 348
Query: 372 TRCIGSGVI 380
C+G G+I
Sbjct: 349 EVCLGGGII 357
>gi|319787135|ref|YP_004146610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoxanthomonas suwonensis 11-1]
gi|317465647|gb|ADV27379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoxanthomonas suwonensis 11-1]
Length = 373
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 194/370 (52%), Gaps = 21/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+ V +SGGVDSSVA LL +G +++ W +D EC EED + A AVC
Sbjct: 6 RTVVGVSGGVDSSVAAWLLAQSGEPLAGLFMQNW-DDDGSG---ECRAEEDRRDAVAVCG 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P + EYW V + + EY GRTPNPDVLCN +KF F+DA + + +
Sbjct: 62 RLGIPFHFRDFSKEYWAGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V+H L D+ KDQTYFL L QAQL +FP+G + K EVR
Sbjct: 122 ATGHYAQVLHEGGRWR-----LLRGADRDKDQTYFLHQLGQAQLAATLFPIGHLPKAEVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + LP +KDS GICF+G+ F EF+ R++ G I + + G +G H G +++
Sbjct: 177 RLAREAGLPTHAKKDSTGICFIGERDFREFLGRYLAAQPGEIRDPQ-GVRIGTHPGVFYF 235
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+GL + P PWYVV KDV N+++V ++ S ++ W+ G
Sbjct: 236 TLGQREGLAIGGVRGRPAAPWYVVGKDVAGNILYVDQDRDSPWLMAGTVETEAMHWVEGA 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP +VR+ C + + +DG ++ V+ + GQ Y G
Sbjct: 296 PPATEFDCTAQVRYRQQDEPCRVRVR--DDGTLSVRFVR---PQRAATPGQSLVLYDGPV 350
Query: 374 CIGSGVILES 383
C+G VI +
Sbjct: 351 CLGGAVIAST 360
>gi|110641310|ref|YP_669040.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 536]
gi|191173062|ref|ZP_03034595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli F11]
gi|218558015|ref|YP_002390928.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli S88]
gi|218689086|ref|YP_002397298.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ED1a]
gi|306814017|ref|ZP_07448190.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101]
gi|331657197|ref|ZP_08358159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TA206]
gi|386598941|ref|YP_006100447.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli IHE3034]
gi|386604911|ref|YP_006111211.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UM146]
gi|415841250|ref|ZP_11522355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli RN587/1]
gi|417083671|ref|ZP_11951716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli cloneA_i1]
gi|417283506|ref|ZP_12070803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3003]
gi|417288359|ref|ZP_12075644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW07793]
gi|419915146|ref|ZP_14433514.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli KD1]
gi|422747837|ref|ZP_16801750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H252]
gi|422753741|ref|ZP_16807568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H263]
gi|422839592|ref|ZP_16887564.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli H397]
gi|425277270|ref|ZP_18668571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli ARS4.2123]
gi|425299681|ref|ZP_18689672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 07798]
gi|432357446|ref|ZP_19600689.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE4]
gi|432361870|ref|ZP_19605053.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE5]
gi|432380841|ref|ZP_19623790.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE15]
gi|432386606|ref|ZP_19629501.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE16]
gi|432440603|ref|ZP_19682951.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE189]
gi|432445712|ref|ZP_19688015.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE191]
gi|432465136|ref|ZP_19707236.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE205]
gi|432470472|ref|ZP_19712524.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE206]
gi|432513409|ref|ZP_19750642.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE224]
gi|432553170|ref|ZP_19789899.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE47]
gi|432573152|ref|ZP_19809642.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE55]
gi|432583172|ref|ZP_19819580.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE57]
gi|432587392|ref|ZP_19823757.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE58]
gi|432596992|ref|ZP_19833273.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE62]
gi|432610897|ref|ZP_19847064.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE72]
gi|432645654|ref|ZP_19881452.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE86]
gi|432654754|ref|ZP_19890470.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE93]
gi|432698523|ref|ZP_19933688.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE169]
gi|432712762|ref|ZP_19947811.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE8]
gi|432745144|ref|ZP_19979839.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE43]
gi|432753875|ref|ZP_19988431.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE22]
gi|432778006|ref|ZP_20012255.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE59]
gi|432786794|ref|ZP_20020958.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE65]
gi|432820380|ref|ZP_20054083.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE118]
gi|432826601|ref|ZP_20060255.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE123]
gi|432898030|ref|ZP_20108861.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE192]
gi|432904001|ref|ZP_20113272.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE194]
gi|432937040|ref|ZP_20135732.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE183]
gi|432971328|ref|ZP_20160201.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE207]
gi|432984862|ref|ZP_20173591.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE215]
gi|433004577|ref|ZP_20193015.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE227]
gi|433011834|ref|ZP_20200237.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE229]
gi|433013334|ref|ZP_20201706.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE104]
gi|433022975|ref|ZP_20210985.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE106]
gi|433028130|ref|ZP_20215997.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE109]
gi|433038165|ref|ZP_20225775.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE113]
gi|433072162|ref|ZP_20258852.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE129]
gi|433077265|ref|ZP_20263825.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE131]
gi|433082048|ref|ZP_20268520.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE133]
gi|433100638|ref|ZP_20286743.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE145]
gi|433119679|ref|ZP_20305380.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE157]
gi|433143747|ref|ZP_20328909.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE168]
gi|433153206|ref|ZP_20338170.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE176]
gi|433162952|ref|ZP_20347709.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE179]
gi|433167979|ref|ZP_20352642.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE180]
gi|433182649|ref|ZP_20366940.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE85]
gi|433187912|ref|ZP_20372027.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE88]
gi|433197730|ref|ZP_20381648.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE94]
gi|433322738|ref|ZP_20400141.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli J96]
gi|123344119|sp|Q0TIU0.1|MNMA_ECOL5 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205822319|sp|A1AA27.2|MNMA_ECOK1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205822366|sp|Q1RD20.2|MNMA_ECOUT RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|110342902|gb|ABG69139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 536]
gi|190906607|gb|EDV66213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli F11]
gi|218364784|emb|CAR02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli S88]
gi|218426650|emb|CAR07478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli ED1a]
gi|294491197|gb|ADE89953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli IHE3034]
gi|305852654|gb|EFM53102.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101]
gi|307627395|gb|ADN71699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UM146]
gi|323187621|gb|EFZ72928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli RN587/1]
gi|323953180|gb|EGB49046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H252]
gi|323957959|gb|EGB53671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli H263]
gi|331055445|gb|EGI27454.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TA206]
gi|355352614|gb|EHG01789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli cloneA_i1]
gi|371609466|gb|EHN98005.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli H397]
gi|386243449|gb|EII85182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 3003]
gi|386247151|gb|EII93324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli TW07793]
gi|388384334|gb|EIL46067.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli KD1]
gi|408204987|gb|EKI29893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli ARS4.2123]
gi|408219473|gb|EKI43620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli 07798]
gi|430878988|gb|ELC02349.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE4]
gi|430889330|gb|ELC11998.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE5]
gi|430908872|gb|ELC30262.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE16]
gi|430910132|gb|ELC31489.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE15]
gi|430968042|gb|ELC85276.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE189]
gi|430974257|gb|ELC91190.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE191]
gi|430995151|gb|ELD11449.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE205]
gi|430999650|gb|ELD15732.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE206]
gi|431043637|gb|ELD53954.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE224]
gi|431085887|gb|ELD91991.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE47]
gi|431110360|gb|ELE14287.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE55]
gi|431118299|gb|ELE21319.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE57]
gi|431121770|gb|ELE24641.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE58]
gi|431132777|gb|ELE34776.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE62]
gi|431150057|gb|ELE51115.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE72]
gi|431182372|gb|ELE82193.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE86]
gi|431194987|gb|ELE94201.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE93]
gi|431245847|gb|ELF40126.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE169]
gi|431258895|gb|ELF51658.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE8]
gi|431293552|gb|ELF83845.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE43]
gi|431304445|gb|ELF92974.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE22]
gi|431329329|gb|ELG16627.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE59]
gi|431340840|gb|ELG27861.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE65]
gi|431369520|gb|ELG55741.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE118]
gi|431373725|gb|ELG59328.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE123]
gi|431428757|gb|ELH10698.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE192]
gi|431434435|gb|ELH16085.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE194]
gi|431465995|gb|ELH46075.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE183]
gi|431484337|gb|ELH64017.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE207]
gi|431502350|gb|ELH81241.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE215]
gi|431516950|gb|ELH94548.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE229]
gi|431517898|gb|ELH95420.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE227]
gi|431534022|gb|ELI10513.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE104]
gi|431538984|gb|ELI14963.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE106]
gi|431544716|gb|ELI19531.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE109]
gi|431553342|gb|ELI27269.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE113]
gi|431591246|gb|ELI62245.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE129]
gi|431599648|gb|ELI69353.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE131]
gi|431604831|gb|ELI74232.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE133]
gi|431621587|gb|ELI90383.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE145]
gi|431646923|gb|ELJ14413.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE157]
gi|431664766|gb|ELJ31499.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE168]
gi|431677439|gb|ELJ43516.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE176]
gi|431690870|gb|ELJ56344.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE179]
gi|431692542|gb|ELJ57978.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE180]
gi|431708103|gb|ELJ72628.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE88]
gi|431710345|gb|ELJ74770.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE85]
gi|431724408|gb|ELJ88333.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli KTE94]
gi|432348791|gb|ELL43234.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli J96]
Length = 368
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCTVKALDA----DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|385812134|ref|YP_005848525.1| tRNA methyl transferase [Lactobacillus fermentum CECT 5716]
gi|299783033|gb|ADJ41031.1| tRNA methyl transferase [Lactobacillus fermentum CECT 5716]
Length = 377
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 202/381 (53%), Gaps = 20/381 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MTDNSHTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V Q+ +P V+ EYW V +Y I+E++ GRTPNPDV+CN IKF AF++ +
Sbjct: 58 DVAKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYAN 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DYVA+GHYA + A + L +KD+ KDQTYFLS L AQL +++FPL
Sbjct: 118 QLGADYVATGHYADLKRDEAGNMH----LMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAG 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKI-KFSEFVARHIGEMEGVILEAETGDFLG 251
+K+EVR+ A L D+KDS GICF+G+ F EF+++++ +G ++ G +G
Sbjct: 174 YTKKEVRQLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLPAQQGE-MQTVDGKVVG 232
Query: 252 KHWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTIGQR+GL L G PW+V+ KD+ NV++V + Y +
Sbjct: 233 THAGLMYYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASD 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD--QGLAAGQ 364
+ W+ + C + + + ++ +DG +V ++ DD + + GQ
Sbjct: 293 IHWVDDVVSRYGXEFHCTAKFRYRQKDEGVTVKLSDDG----QMVTVTSDDPARAITPGQ 348
Query: 365 FAAFYQGTRCIGSGVILESWD 385
FY G C+GS +I +++
Sbjct: 349 AVVFYDGDECLGSAIIDRAYN 369
>gi|292488015|ref|YP_003530892.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Erwinia amylovora CFBP1430]
gi|292899233|ref|YP_003538602.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Erwinia amylovora ATCC 49946]
gi|428784950|ref|ZP_19002441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erwinia amylovora ACW56400]
gi|291199081|emb|CBJ46192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erwinia amylovora ATCC 49946]
gi|291553439|emb|CBA20484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erwinia amylovora CFBP1430]
gi|426276512|gb|EKV54239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erwinia amylovora ACW56400]
Length = 369
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 202/371 (54%), Gaps = 27/371 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G ++K W +ED E + C ED+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEEDGEEY---CTAAEDLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G ++K EV
Sbjct: 124 IATGHYVR----RQDVDGKSRLLR-GLDGNKDQSYFLYTLSHQQIAQSLFPVGELAKPEV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q +L +KDS GICF+G+ KF+EF+AR++ G I+ + G +G+H G +
Sbjct: 179 RRIAEQLELVTAKKKDSTGICFIGERKFTEFLARYLPAQPGAIISVD-GVNVGQHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVV+KDV NN++ V++ + + L W+
Sbjct: 238 HTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQLHWVDR 297
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLM---IEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
R K R+ C ++ E +E V+ + GQ A FY
Sbjct: 298 NVLSAPLRCAVKTRYRQEDIPCTVIPLDAERIE--------VRFDYPVAAVTPGQSAVFY 349
Query: 370 QGTRCIGSGVI 380
C+G G+I
Sbjct: 350 LDEVCLGGGII 360
>gi|418070523|ref|ZP_12707798.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus R0011]
gi|357539943|gb|EHJ23960.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus R0011]
Length = 372
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 193/370 (52%), Gaps = 18/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 7 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVAS 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY+
Sbjct: 64 EIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNADYI 123
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYA+V D+ +L D KDQTYFLS LSQ QLK+ +FP+G + K EVR
Sbjct: 124 AMGHYAQV---KTDERGVVHMLR-GADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPEVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS GICF+G+ F +F++ ++ G ++ + G G H G +Y
Sbjct: 180 KIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEKGTHDGLMYY 238
Query: 260 TIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL + G PW+VV KD+ N+++V + + + + W +G
Sbjct: 239 TIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNFNWTTGEA 298
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + + K R+ + + I + +DG A V + + GQ FY G C
Sbjct: 299 PADGTHMTAKFRYRQ--RDTGVTIHYHDDG---TATVDFDVPVRAITPGQAVVFYDGEEC 353
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 354 LGGGTIDAAY 363
>gi|238855258|ref|ZP_04645577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii 269-3]
gi|260664617|ref|ZP_05865469.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US]
gi|313471923|ref|ZP_07812415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii 1153]
gi|238832150|gb|EEQ24468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii 269-3]
gi|239529151|gb|EEQ68152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii 1153]
gi|260561682|gb|EEX27654.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US]
Length = 375
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 200/380 (52%), Gaps = 16/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL AG+ ++K W D C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDDTDDAGV---CTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW+ V Y + EY+ GRTPNPD++CNT IKF +F++
Sbjct: 58 DVKRVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S++ DY+A GHYAK V + + + KD KDQTYFLS LSQ Q+K +IFPL
Sbjct: 118 SLDADYIAMGHYAKTVKDANGVTH----MMRPKDGNKDQTYFLSQLSQEQIKHVIFPLAN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K +VR+ A + L +KDS GICF+G+ F +F++ + G ++ + G+ +G+
Sbjct: 174 LTKPQVREIAEKAGLATAKKKDSTGICFIGERNFKKFLSEFLPAKPGKMVTPD-GNVVGQ 232
Query: 253 HWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD+K N + V + Y S + +
Sbjct: 233 HGGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGM 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +G P ++ C + + ++ + V E + + GQ
Sbjct: 293 SFYTGNPDHDV-EFDCTAKF--RYRQADVGVHVKYHAATKTCDVYFDEPARAVTPGQALV 349
Query: 368 FYQGTRCIGSGVILESWDDQ 387
Y+G C+G G I ++ ++
Sbjct: 350 LYKGEECLGGGNIDAAYQEE 369
>gi|213052788|ref|ZP_03345666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhi str.
E00-7866]
gi|437391038|ref|ZP_20751112.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435199667|gb|ELN83724.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
Length = 374
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 70 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 130 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 184
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 185 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 243
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 244 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 299
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++D + I V+ E + GQ A F
Sbjct: 300 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALDD--DRIEVI-FDEPVAAVTPGQSAVF 354
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 355 YSGEVCLGGGII 366
>gi|406670605|ref|ZP_11077850.1| tRNA-specific 2-thiouridylase mnmA [Facklamia hominis CCUG 36813]
gi|405582121|gb|EKB56127.1| tRNA-specific 2-thiouridylase mnmA [Facklamia hominis CCUG 36813]
Length = 365
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/370 (35%), Positives = 195/370 (52%), Gaps = 20/370 (5%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSVA LL AG+ ++K W D C ED + V +++++P
Sbjct: 1 MSGGVDSSVAALLLKQAGYDVVGLFMKNWDDTDESGV---CTATEDYEDVSLVAEKIEIP 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
V+ EYW V Y + EYR GRTPNPDV+CN IKF AFMD + DY+A GHY
Sbjct: 58 YYAVNFEKEYWDRVFEYFLSEYRHGRTPNPDVMCNKEIKFKAFMDYAMGLGADYIAMGHY 117
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
A+V D + +L D KDQTYFLS LSQ QL R +FP+G + K++VR+ A
Sbjct: 118 AQV---ECDDQGHVHLLR-GADSNKDQTYFLSQLSQEQLARSLFPIGHLEKKQVREIARD 173
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
L ++KDS G+CF+G+ F+EF++ ++ G ++ G +G+H G +YTIGQR
Sbjct: 174 AGLATANKKDSTGVCFIGERNFNEFLSNYLPNKPGK-MKTIDGRVMGEHMGLMYYTIGQR 232
Query: 265 QGLRLPGG--------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
GL + G PW+VV KD+ ++V + ++ + + + PP
Sbjct: 233 HGLGIGGSAGSDGSNEPWFVVGKDMSTQTLYVGQGFHHENLYADDLIASQVSFTQKTPPS 292
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
S +C + + + + +EDG + A V+ + + + GQ FYQG C+G
Sbjct: 293 --SSFECTAKFRYRQKDVPVTVHLLEDGQK--AKVEFHQPARAVTPGQAVVFYQGRECLG 348
Query: 377 SGVILESWDD 386
G+I + D
Sbjct: 349 GGLIDAVYKD 358
>gi|342216617|ref|ZP_08709264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Peptoniphilus sp. oral taxon 375 str. F0436]
gi|341587507|gb|EGS30907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Peptoniphilus sp. oral taxon 375 str. F0436]
Length = 366
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 208/371 (56%), Gaps = 19/371 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
++V + +SGGVDSSVA +L G+ ++K W D C E D + V
Sbjct: 1 MRVILGMSGGVDSSVAAYILKEKGYDVIGLFMKNWDDTDESGV---CTAERDYEDVARVA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
DQ+D+P ++ EYW V SY + EY+ RTPNPDV+CN IKF +F+D+ ++ DY
Sbjct: 58 DQLDIPYYSINFEKEYWDRVFSYFLNEYKKDRTPNPDVMCNKEIKFKSFLDSAMNLGADY 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHYA+ +S D E K +L + D KDQTYFLS LSQ QL++ IFP+G ++K +V
Sbjct: 118 IAMGHYAQ---TSRDSEGKVHLLRGADDN-KDQTYFLSQLSQDQLQKAIFPIGDLTKAQV 173
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A DL D+KDS G+CF+G+ F+EF+A ++ G ++ + G +GKH G +
Sbjct: 174 RAIAKDLDLATADKKDSTGVCFIGERNFNEFLANYLPNQPGQMVTLD-GKVMGKHNGLMY 232
Query: 259 YTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
YTIGQRQGL + GG PW+V+ KD+K ++V + + L ++ G
Sbjct: 233 YTIGQRQGLGIGGGGESGEPWFVIGKDLKTKTLYVGQGKNHPNLFSDSCLASDLNFIQGQ 292
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + KVR Y + HV+ G+ A+V + +G+ GQ FYQG
Sbjct: 293 APGDSFDCTVKVR-----YRQKDVPAHVDLRGDK-ALVHFKDKVRGVTPGQAVVFYQGQE 346
Query: 374 CIGSGVILESW 384
C+G G+I E++
Sbjct: 347 CLGGGLIDEAY 357
>gi|336316196|ref|ZP_08571096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Rheinheimera sp. A13L]
gi|335879318|gb|EGM77217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Rheinheimera sp. A13L]
Length = 366
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 202/375 (53%), Gaps = 21/375 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 1 MSDNSSKKVIVGMSGGVDSSVSAYLLIQQGYQVEGLFMKNWEEDDDSEY---CAAAEDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIKLHKVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ DY+A+GHY V D ++ L D KDQ+YFL + + + + +FP+G
Sbjct: 118 EALGADYIATGHY--VQRREVDGHWQ---LLRGLDTNKDQSYFLYTIGEEHVAQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
+ K VR A + L D+KDS GICF+G+ KF +F+ +++ G I E GD +G
Sbjct: 173 HLEKPLVRAIAEEQGLITHDKKDSTGICFIGERKFKDFLQKYLPAQPGDIYTVE-GDKIG 231
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GLR+ G PWYVV KD+ NN + V++ + +
Sbjct: 232 QHDGLMYHTLGQRKGLRIGGLKDGDDQPWYVVAKDLINNRLIVAQGHDHPSMFSKGLVAN 291
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
L W+ P+++ R K R+ C L + DG VV + + + GQ
Sbjct: 292 QLHWVDRTGPQQLLRCTVKTRYRQTDIPCTLT--PMPDG---TVVVVFDQPQKAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVI 380
A FY C+G G+I
Sbjct: 347 AVFYSDEICLGGGII 361
>gi|91210289|ref|YP_540275.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UTI89]
gi|117623318|ref|YP_852231.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli APEC O1]
gi|237706881|ref|ZP_04537362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia sp. 3_2_53FAA]
gi|300982382|ref|ZP_07176080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 200-1]
gi|422358724|ref|ZP_16439373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 110-3]
gi|422371632|ref|ZP_16452009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 16-3]
gi|422375451|ref|ZP_16455717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 60-1]
gi|91071863|gb|ABE06744.1| probable ATPase YcfB [Escherichia coli UTI89]
gi|115512442|gb|ABJ00517.1| putative ATPase [Escherichia coli APEC O1]
gi|226898091|gb|EEH84350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia sp. 3_2_53FAA]
gi|300307219|gb|EFJ61739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 200-1]
gi|315287470|gb|EFU46881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 110-3]
gi|315296602|gb|EFU55897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 16-3]
gi|324013226|gb|EGB82445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Escherichia coli MS 60-1]
Length = 383
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTMRCTVKTRYRQTDIPCTVKALD----ADRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|227877338|ref|ZP_03995411.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01]
gi|256842900|ref|ZP_05548388.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN]
gi|256848726|ref|ZP_05554160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
MV-1A-US]
gi|262045866|ref|ZP_06018830.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US]
gi|293381734|ref|ZP_06627715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus crispatus 214-1]
gi|312977582|ref|ZP_07789329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus crispatus CTV-05]
gi|423317791|ref|ZP_17295688.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
FB049-03]
gi|423321128|ref|ZP_17299000.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
FB077-07]
gi|227863194|gb|EEJ70640.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01]
gi|256614320|gb|EEU19521.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN]
gi|256714265|gb|EEU29252.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
MV-1A-US]
gi|260573825|gb|EEX30381.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US]
gi|290921781|gb|EFD98802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus crispatus 214-1]
gi|310895321|gb|EFQ44388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus crispatus CTV-05]
gi|405596451|gb|EKB69787.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
FB077-07]
gi|405597727|gb|EKB70978.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
FB049-03]
Length = 375
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 198/373 (53%), Gaps = 16/373 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W D C ED + K V D
Sbjct: 8 RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGV---CTATEDYEDVKKVAD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN++IKF +F++ ++ DY+
Sbjct: 65 KIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDADYI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYAK V + + + KD KDQTYFLS LSQ Q+ ++IFPL ++K +VR
Sbjct: 125 AMGHYAKTVKDTNGVTH----MMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLTKPQVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A L +KDS GICF+G+ F +F++ + G ++ + G +G+H G +Y
Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPD-GKVVGEHAGLMYY 239
Query: 260 TIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL L PW+VV KD+K N + V + Y S + + +G P
Sbjct: 240 TIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLNASDMSFFTGKP 299
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
+ + C + + C++ + +N A V E + + GQ Y+G C
Sbjct: 300 DHDF-EMHCTAKF--RYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYKGEEC 356
Query: 375 IGSGVILESWDDQ 387
+G G I ++ ++
Sbjct: 357 LGGGNIDAAYQEE 369
>gi|344205050|ref|YP_004790192.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma putrefaciens KS1]
gi|343956973|gb|AEM68688.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma putrefaciens KS1]
Length = 373
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 213/384 (55%), Gaps = 40/384 (10%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW---FQEDFENFW----TECPWEEDMK 72
KV V LSGGVDSSVA LL G+ +++ W D W + CP E+D
Sbjct: 3 KVIVGLSGGVDSSVAAYLLIQQGYQVEGLFMRNWDSAVNNDVLGNWNINDSICPQEQDYN 62
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A V +++++ L V +EYW+ V Y I+EY+ GRTPNPD+LCN IKF F++ A+
Sbjct: 63 DALKVAEKLNIKLHRVDFVEEYWEYVFQYFIDEYQKGRTPNPDILCNKYIKFDKFLNYAV 122
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++++ DY+A GHYA + + +Y+ L + D+ KDQTYFLS L+Q QL + +FPL
Sbjct: 123 NNLKADYIAMGHYAGIRFNQNTNQYE---LIRAVDQNKDQTYFLSQLTQNQLAKTLFPLQ 179
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++K ++R+ A + DL D+KDS GICF+G+ F+EF+ +I G I++ +T LG
Sbjct: 180 GLTKIQIRQIAREQDLITADKKDSTGICFIGERHFTEFLQNYIANQPGDIVDIKTNKVLG 239
Query: 252 KHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR----VG 305
+H G +YTIGQR+GL L G P+YV +KD++ +++VS + + L V
Sbjct: 240 RHIGVMYYTIGQRKGLNLGGMNEPYYVAKKDLQQKILYVS----ALSDQSYLLSNQCTVT 295
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSED------DQG 359
+ W ++SR V+H + C + + + +A+ L+ D DQ
Sbjct: 296 EVNW-----TLDLSRYVSDVKH----FKCTAKFRYRQSDSQ-VALQYLNNDSYQVIFDQP 345
Query: 360 LAA---GQFAAFYQGTRCIGSGVI 380
L A GQ A FY C+G VI
Sbjct: 346 LKAITPGQQAVFYLDEICLGGAVI 369
>gi|167553799|ref|ZP_02347544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205321840|gb|EDZ09679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
Length = 368
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQLGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALDD--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YSGEVCLGGGII 360
>gi|408375004|ref|ZP_11172683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alcanivorax hongdengensis A-11-3]
gi|407765172|gb|EKF73630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alcanivorax hongdengensis A-11-3]
Length = 355
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 189/367 (51%), Gaps = 21/367 (5%)
Query: 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82
V +SGGVDSSVA L AG+ ++K W ++D + C ED+ A V +
Sbjct: 3 VGMSGGVDSSVAAARLLDAGYQVEGLFMKNWNEDDGTEY---CTAREDLMDAMQVAGVLG 59
Query: 83 VPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASG 142
+ L + EYW V + + EYR GRTPNPD+LCN IKF AF+D ++ DY+A+G
Sbjct: 60 IELHTANFASEYWDRVFEHFLAEYRAGRTPNPDILCNKEIKFQAFLDHAVTLGADYIATG 119
Query: 143 HYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFA 202
HYA+V HS P+ L + D KDQTYFL + + R +FPLG + K +VR+ A
Sbjct: 120 HYARVDHSG------PARLLRAVDTNKDQTYFLHAVDHEKFARTLFPLGDLEKPQVRQIA 173
Query: 203 TQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIG 262
+ N +KDS GICF+G+ +F +F+ +++ G I E + G +G+H G +YT+G
Sbjct: 174 EEKGFANHKKKDSTGICFIGERRFKDFLEQYLPAQPGNI-EDDHGHVIGQHDGLMYYTLG 232
Query: 263 QRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
QRQGL + G PWYV KD++ NV+ + RR + W + P
Sbjct: 233 QRQGLGIGGRADAGDAPWYVAGKDLERNVLIAVQGTDHPLLFRRELTSAPVMWTALQAPV 292
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
+RL K R+ C VED G V + + GQ FY G C+G
Sbjct: 293 LPARLTAKTRYRQPDQACI-----VEDAGNGKVRVIFDVPQRAVTPGQSVVFYHGQECLG 347
Query: 377 SGVILES 383
VI E+
Sbjct: 348 GAVIEET 354
>gi|227524073|ref|ZP_03954122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus hilgardii ATCC 8290]
gi|227088812|gb|EEI24124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus hilgardii ATCC 8290]
Length = 374
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 203/377 (53%), Gaps = 17/377 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MQDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V +++ +P V+ EYW V +Y ++EY+ GRTP+PDV+CN IKF AF+D
Sbjct: 58 DVAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ + D++ +L S D KDQTYFLS LS QL R++FP+G
Sbjct: 118 ELGADYIATGHYAQL---TRDEDGHNHLLRAS-DGNKDQTYFLSQLSANQLDRVMFPIGN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ F +F+ ++ G ++ + G+ G+
Sbjct: 174 LVKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLPATPGKMMTVD-GEVKGQ 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + G PW+V+ KD+K N+++V + Y++ +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDI 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
W++ L + K R+ + H+ D G+ + V + + GQ
Sbjct: 293 HWVNNLDRGQDFHCTAKFRYRQRDTGVTV---HLSDDGQKVR-VDFDAPVRAITPGQAVV 348
Query: 368 FYQGTRCIGSGVILESW 384
FY G C+GS +I ++
Sbjct: 349 FYDGEECLGSAIIDAAY 365
>gi|418327825|ref|ZP_12938962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis 14.1.R1.SE]
gi|418615656|ref|ZP_13178595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU118]
gi|418631423|ref|ZP_13193886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU128]
gi|418633476|ref|ZP_13195889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU129]
gi|420190231|ref|ZP_14696175.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM037]
gi|420192368|ref|ZP_14698228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM023]
gi|420204535|ref|ZP_14710093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM015]
gi|365232603|gb|EHM73594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis 14.1.R1.SE]
gi|374816706|gb|EHR80905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU118]
gi|374835314|gb|EHR98930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU128]
gi|374839229|gb|EHS02747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU129]
gi|394259122|gb|EJE03992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM037]
gi|394261579|gb|EJE06376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM023]
gi|394273545|gb|EJE17976.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM015]
Length = 372
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/379 (36%), Positives = 206/379 (54%), Gaps = 21/379 (5%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
K ++V V +SGGVDSSV LL G+ ++K W D EN C ED
Sbjct: 3 NKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVI 59
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
AVC+Q+ +P V+ ++YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 60 AVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLG 119
Query: 136 FDYVASGHYAKV-VHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
DYVA+GHYA++ H E V D KDQTYFL+ LSQ QL +++FP+G I
Sbjct: 120 ADYVATGHYARIRRHEDGHVEMLRGV-----DNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR+ A + +L +KDS GICF+G+ F EF+++++ G +L G +G+H
Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGEMLTL-NGKKMGQHS 233
Query: 255 GFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
G +YTIGQR GL + G PW+VV K++ +N+++V + ++ D + + S S
Sbjct: 234 GLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNILYVEQGFHH-DALYSDYLIASD--FSF 290
Query: 313 LPPEEISR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
+ P EI +C + Y +V+ EN V +E + + GQ FY
Sbjct: 291 VNPSEIDLEKGFECTAKFR---YRQKDTKVYVQRENENSIRVTFAEPVRAITPGQAVVFY 347
Query: 370 QGTRCIGSGVILESWDDQG 388
C+G I + + ++G
Sbjct: 348 NQEVCLGGATIDDVYKNEG 366
>gi|312865771|ref|ZP_07725993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus downei F0415]
gi|311098646|gb|EFQ56868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus downei F0415]
Length = 374
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 201/387 (51%), Gaps = 22/387 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 2 MTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNW--DDTDEFGV-CTATEDYK 58
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + +YR GRTPNPDV+CN IKF AF+D
Sbjct: 59 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAKYRAGRTPNPDVMCNKEIKFKAFLDYAM 118
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S+ DYVA+GHYA+V S D++ +L D KDQTYFLS LSQ QL++++FPLG
Sbjct: 119 SLGADYVATGHYAQV---SRDEDGTVHMLR-GADNNKDQTYFLSQLSQEQLQKVMFPLGH 174
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVRK A + L +KDS GICF+G+ F EF++ ++ G +L + D +G+
Sbjct: 175 LEKPEVRKIAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQPGRMLTLDGKD-MGQ 233
Query: 253 HWGFWFYTI------GQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTI G PW+VV KD+ N+++V + +Y + +
Sbjct: 234 HAGLMYYTIGQRGGLGIGGQQGGGNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLKAST 293
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + P E K R+ + ++ G+ VV + + + GQ
Sbjct: 294 IHFTRDTPEEFTMECTAKFRYRQPDSKVTVHVK-----GDQAEVV-FDQPQRAITPGQAV 347
Query: 367 AFYQGTRCIGSGVILESWDDQGFPVCE 393
FY G C+G G+I ++ ++ VC+
Sbjct: 348 VFYDGDECLGGGIIDNAYKNE--VVCQ 372
>gi|354582073|ref|ZP_09000975.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus lactis 154]
gi|353199472|gb|EHB64934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus lactis 154]
Length = 356
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 203/365 (55%), Gaps = 17/365 (4%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSV LL G+ ++K W +D + F C E D + + VC+Q+D+P
Sbjct: 1 MSGGVDSSVTALLLKQQGYEVIGIFMKNW--DDTDEFGY-CTAEADAEDVRRVCEQLDIP 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
V+ EY+ V SY ++EY+ GRTPNPDV+CN IKFG F++ + DYVA+GHY
Sbjct: 58 YYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKALDLGADYVATGHY 117
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
A+V + V D KDQTYFL+ L+Q QL + +FP+G + K EVR+ A +
Sbjct: 118 ARVTEENGQFHLLRGV-----DGNKDQTYFLNALNQEQLSKAMFPIGHLPKPEVRRLAEE 172
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
L +KDS G+CF+G+ F EF+++++ G +++ TG+ G+H G +YT+GQR
Sbjct: 173 AGLYTAKKKDSTGVCFIGERNFKEFLSQYLPAQSGDMVDIVTGEVKGRHDGLMYYTLGQR 232
Query: 265 QGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR 320
QGL + G PW+V +KD+ NN+++V + + L G + W++G +
Sbjct: 233 QGLGIGGSGSGEPWFVADKDLNNNILYVVQGDHPSLYSTGLIASG-VNWIAGADAMPKAA 291
Query: 321 LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
C + + + + EDG ++A ++ + + GQ FYQG C+G G I
Sbjct: 292 FTCTAKFRYRQPDQEVTLTPREDGTVHVA---FAKPQKAITPGQAVVFYQGEECLGGGTI 348
Query: 381 LESWD 385
ES D
Sbjct: 349 -ESAD 352
>gi|383190785|ref|YP_005200913.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371589043|gb|AEX52773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 369
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 201/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDEEY---CTAATDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + S L D KDQ+YFL L Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVRRQDIDG-----VSHLLRGVDGNKDQSYFLYTLGHEQVAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + DL +KDS GICF+G+ KF +F+ R++ GVI + G +G+H G +
Sbjct: 180 RRIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLPAQPGVIKSVD-GQVMGEHQGLMY 238
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWY VEKDV+NN+++V++ + + RL VG L
Sbjct: 239 HTLGQRKGLGIGGQKDGSEEPWYTVEKDVENNILYVAQGH----EHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ + L C V+ Y + V G++ V + GQ A F
Sbjct: 295 WVD--RKTLTAPLTCTVKT---RYRQEDIPCVVTPLGDDRIEVHFDAPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
Y G C+G GVI
Sbjct: 350 YLGDVCLGGGVI 361
>gi|423077679|ref|ZP_17066371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus ATCC 21052]
gi|357553393|gb|EHJ35143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus ATCC 21052]
Length = 377
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 193/370 (52%), Gaps = 18/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W D EN C D + V
Sbjct: 12 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATTDYEDVAKVAS 68
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y ++EY+ GRTPNPDV+CN IKF AF+D + DY+
Sbjct: 69 EIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNADYI 128
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYA+V D+ +L D KDQTYFLS LSQ QLK+ +FP+G + K EVR
Sbjct: 129 AMGHYAQV---KTDERGVVHMLR-GADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPEVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A L +KDS GICF+G+ F +F++ ++ G ++ + G G H G +Y
Sbjct: 185 KIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVD-GVEKGTHDGLMYY 243
Query: 260 TIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL + G PW+VV KD+ N+++V + + + + W +G
Sbjct: 244 TIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNFNWTTGEA 303
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + + K R+ + + I + +DG A V + + GQ FY G C
Sbjct: 304 PADGTHMTAKFRYRQ--RDTGVTIHYHDDG---TATVDFDVPVRAITPGQAVVFYDGEEC 358
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 359 LGGGTIDAAY 368
>gi|184155064|ref|YP_001843404.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus fermentum IFO
3956]
gi|229486413|sp|B2GB92.1|MNMA_LACF3 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|183226408|dbj|BAG26924.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Lactobacillus fermentum IFO 3956]
Length = 377
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/381 (35%), Positives = 202/381 (53%), Gaps = 20/381 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MTDNSHTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V Q+ +P V+ EYW V +Y I+E++ GRTPNPDV+CN IKF AF++ +
Sbjct: 58 DVAKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYAN 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DYVA+GHYA + A + L +KD+ KDQTYFLS L AQL +++FPL
Sbjct: 118 QLGADYVATGHYADLKRDEAGNMH----LMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAG 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKI-KFSEFVARHIGEMEGVILEAETGDFLG 251
+K+EVR+ A L D+KDS GICF+G+ F EF+++++ +G ++ G +G
Sbjct: 174 YTKKEVRQLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLPAQQGE-MQTVDGKVVG 232
Query: 252 KHWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YTIGQR+GL L G PW+V+ KD+ NV++V + Y +
Sbjct: 233 THAGLMYYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASD 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDD--QGLAAGQ 364
+ W+ + C + + + ++ +DG +V ++ DD + + GQ
Sbjct: 293 IHWVDDVVSRYGMEFHCTAKFRYRQKDEGVTVKLSDDG----QMVTVTSDDPARAITPGQ 348
Query: 365 FAAFYQGTRCIGSGVILESWD 385
FY G C+GS +I +++
Sbjct: 349 AVVFYDGDECLGSAIIDRAYN 369
>gi|146307422|ref|YP_001187887.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina ymp]
gi|205816890|sp|A4XUY9.1|MNMA_PSEMY RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|145575623|gb|ABP85155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas mendocina ymp]
Length = 370
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/368 (35%), Positives = 202/368 (54%), Gaps = 23/368 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C +D+ A+AVCD
Sbjct: 8 RVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWDEDDGTEY---CTAMDDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D S+ D +
Sbjct: 65 RIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D + + +L+ D KDQ+YFL + Q+ + +FP+G + K +VR
Sbjct: 125 ATGHYVR----RRDIDGRTELLK-GLDPNKDQSYFLHAVGGEQIAKTLFPVGELEKPQVR 179
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A +++L +KDS GICF+G+ +FS+F+ +++ G I E G +G+H G ++
Sbjct: 180 AIAEKYELATAKKKDSTGICFIGERRFSDFLKQYLPAQPGDI-ETTEGQVIGRHHGLMYH 238
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWLSG 312
TIGQRQGL + G PWYV+ KD+ NV+ V + N + + R L + W++
Sbjct: 239 TIGQRQGLGIGGLKDASDDPWYVLRKDLTRNVLIVGQGNEHPWLFSRALL-ASDIYWVNP 297
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ RL KVR+ C L E E+G + E + + GQ FY G
Sbjct: 298 VDLSTPRRLTAKVRYRQSDQACTL--EKTENGYRAV----FDEPQRAVTPGQSVVFYDGE 351
Query: 373 RCIGSGVI 380
C+G GVI
Sbjct: 352 VCLGGGVI 359
>gi|451984212|ref|ZP_21932469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas aeruginosa 18A]
gi|451758141|emb|CCQ84992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas aeruginosa 18A]
Length = 363
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 203/376 (53%), Gaps = 23/376 (6%)
Query: 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82
V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD++
Sbjct: 3 VGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTEY---CTAREDLADAQAVCDRIG 59
Query: 83 VPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASG 142
+ L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D + D +A+G
Sbjct: 60 IKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATG 119
Query: 143 HYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFA 202
HY + D++ + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR A
Sbjct: 120 HYVR----RRDRDGRTELLK-GLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRAIA 174
Query: 203 TQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIG 262
+ L +KDS GICF+G+ +F++F+ +++ G I E G +G+H G ++TIG
Sbjct: 175 EKHGLATAKKKDSTGICFIGERRFTDFLKQYLPAQPGDI-ETIEGKVIGRHSGLMYHTIG 233
Query: 263 QRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE 316
QRQGL + G PWYV+ KD++ NV+ + R + W++ + E
Sbjct: 234 QRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLAGQGNDHPLLFSRALLASRIYWVNPVELE 293
Query: 317 EISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIG 376
RL+ KVR+ +C ++E +G + E + + GQ FY G C+G
Sbjct: 294 RPRRLRAKVRYRQSDQDC--VLEKTAEGYRAV----FDEPQRAVTPGQSVVFYDGDVCLG 347
Query: 377 SGVI--LESWDDQGFP 390
GVI E+WD G P
Sbjct: 348 GGVIETAEAWDFGGRP 363
>gi|410645247|ref|ZP_11355714.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola agarilytica NO2]
gi|410135177|dbj|GAC04113.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola agarilytica NO2]
Length = 396
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 135/372 (36%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ +L G+ ++K W ++D + + C ED+K A+AV D
Sbjct: 38 KVIVGMSGGVDSSVSAYILLQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVAD 94
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A +E DY
Sbjct: 95 KLGIELHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFKAFLEFAAEELEADY 154
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D ++ + D KDQ+YFL L + + + +FP+G I K +V
Sbjct: 155 IATGHYVR--RREVDGHWQ---MLRGLDDNKDQSYFLYTLGEQHVGQTLFPIGDIEKPQV 209
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ KF++F+++++ GVI E G +G+H G +
Sbjct: 210 REIAQEQGLITHDKKDSTGICFIGERKFTDFLSQYLPAQPGVI-ETPEGQEIGQHQGLMY 268
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KD+ NV+ V + RLF G L
Sbjct: 269 HTLGQRKGLMIGGMKEFGDDPWYVVDKDMARNVLIVGQGA----DHPRLFSKGLVANQLH 324
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ + P + K R+ C+L ++ DG A V + + + GQ A F
Sbjct: 325 WVDRVGPTCAIKCSVKTRYRQEDIPCSLTLD--SDGS---ARVIFDQPQKAVTPGQSAVF 379
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 380 YLNEVCLGGGII 391
>gi|359403786|ref|ZP_09196690.1| tRNA-specific 2-thiouridylase MnmA [Spiroplasma melliferum KC3]
gi|438120103|ref|ZP_20871883.1| tRNA-specific 2-thiouridylase MnmA [Spiroplasma melliferum IPMB4A]
gi|358833017|gb|EHK52121.1| tRNA-specific 2-thiouridylase MnmA [Spiroplasma melliferum KC3]
gi|434155200|gb|ELL44166.1| tRNA-specific 2-thiouridylase MnmA [Spiroplasma melliferum IPMB4A]
Length = 377
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 212/382 (55%), Gaps = 27/382 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------CPWEEDMK 72
KV V LSGGVDSSV+L LL AG+ +++ W + + CP E D
Sbjct: 3 KVVVGLSGGVDSSVSLYLLQQAGYDVEGLFMRNWDSQLNNDILGNKAINNMICPQELDYN 62
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A V + VPL V EYW+ V + I EY+ GRTPNPD+LCN IKF F++ AI
Sbjct: 63 DAVNVSKTLQVPLHRVDFIKEYWEYVFKHFISEYQKGRTPNPDILCNKYIKFDYFLNYAI 122
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A GHYA+V + QEY+ L D+ KDQTYFLS L+Q QL + FPLG
Sbjct: 123 NNYHADFIAMGHYARVRFNEELQEYQ---LLRGIDRDKDQTYFLSQLNQGQLSKTFFPLG 179
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++K+EVR+ A +L ++KDS GICF+G+ F F+ +I +G I++ ET + +G
Sbjct: 180 NLTKKEVREIAMTQNLSTANKKDSTGICFIGERDFKNFLQNYIPNQDGNIVDIETKEVVG 239
Query: 252 KHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR----VG 305
H G +YTIGQR+GL L G P++V K+V+ N+++V+++ +++ L+ V
Sbjct: 240 HHNGVMYYTIGQRRGLNLGGMSEPYFVAGKNVEKNILYVAKS----SEEKWLYSTSCLVT 295
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+ W++ +E + C + + + I + D N +V+ + + + GQ
Sbjct: 296 DVNWINTFREKEFN---CTAKFRYRQKDIPVKITVLND---NKCLVEFATTVKAITPGQA 349
Query: 366 AAFYQGTRCIGSGVILESWDDQ 387
A FY C+G GVI + + D
Sbjct: 350 AVFYVDEVCLGGGVINDVYLDN 371
>gi|348029544|ref|YP_004872230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Glaciecola nitratireducens FR1064]
gi|347946887|gb|AEP30237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Glaciecola nitratireducens FR1064]
Length = 370
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 201/363 (55%), Gaps = 21/363 (5%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSV+ LL G+ ++K W ++D + + C D+ A+AV D++ +
Sbjct: 1 MSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAAVDLADAQAVADKLGIY 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYVASGH 143
L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A + DY+A+GH
Sbjct: 58 LHQINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGADYIATGH 117
Query: 144 YAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFAT 203
Y V D ++K + D KDQ+YFL LS + + +FP+G I K VR+ A
Sbjct: 118 Y--VQRRFEDGKWK---MVRGHDSNKDQSYFLYTLSHEHIAKTLFPVGDIEKPRVREIAE 172
Query: 204 QFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQ 263
Q L ++KDS GICF+G+ KF +F+ +++ G+I AE G+ +G H G ++T+GQ
Sbjct: 173 QQGLVTHNKKDSTGICFIGERKFKDFLGQYLPAKPGIIETAE-GEEIGHHDGLMYHTLGQ 231
Query: 264 RQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
R+GL + G PWYVV+KDV NV+ V + L W+ + P E
Sbjct: 232 RKGLLIGGKKEHGEEPWYVVDKDVARNVLVVGQGADHPKLYSEGLIANQLHWVDRIGPTE 291
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+++ K R+ C + + +DG N+ V+ E + + GQ A FY G C+G
Sbjct: 292 TTKMMVKTRYRQSDIPCTVTPD--KDG--NVKVI-FDEPQKAVTPGQSAVFYAGDICLGG 346
Query: 378 GVI 380
G+I
Sbjct: 347 GII 349
>gi|420164641|ref|ZP_14671366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM095]
gi|420168651|ref|ZP_14675259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM087]
gi|420184587|ref|ZP_14690696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM040]
gi|394231208|gb|EJD76847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM095]
gi|394233360|gb|EJD78968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM087]
gi|394257238|gb|EJE02160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM040]
Length = 372
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 206/379 (54%), Gaps = 21/379 (5%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
K ++V V +SGGVDSSV LL G+ ++K W D EN C ED
Sbjct: 3 NKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVI 59
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
AVC+Q+ +P V+ ++YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 60 AVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLG 119
Query: 136 FDYVASGHYAKV-VHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
DYVA+GHYA++ H E V D KDQTYFL+ LSQ QL +++FP+G I
Sbjct: 120 ADYVATGHYARIRRHDDGHVEMLRGV-----DNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR+ A + +L +KDS GICF+G+ F EF+++++ G +L G +G+H
Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGEMLTL-NGKKMGQHS 233
Query: 255 GFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
G +YTIGQR GL + G PW+VV K++ +NV++V + ++ D + + S S
Sbjct: 234 GLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYVEQGFHH-DALYSDYLIASD--YSF 290
Query: 313 LPPEEISR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
+ P EI +C + Y +V+ EN V +E + + GQ FY
Sbjct: 291 VNPSEIDLEKGFECTAKFR---YRQKDTKVYVQRENENSIRVTFAEPVRAITPGQAVVFY 347
Query: 370 QGTRCIGSGVILESWDDQG 388
C+G I + + ++G
Sbjct: 348 NQEVCLGGATIDDVYKNEG 366
>gi|336234153|ref|YP_004586769.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoglucosidasius
C56-YS93]
gi|335361008|gb|AEH46688.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoglucosidasius
C56-YS93]
Length = 370
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 207/379 (54%), Gaps = 42/379 (11%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W D N C ED + K V +
Sbjct: 5 RVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNW---DDTNDDGVCTATEDYEDVKRVAN 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +P V+ EYW V +Y ++E + GRTPNPDVLCNT IKF AF+D S++ DY+
Sbjct: 62 QLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDADYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ +E L KD KDQTYFLS L++ L +++FPLG ++K+EVR
Sbjct: 122 ATGHYARI-----RRENGQVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGELTKDEVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A + +L ++KDS GICF+G+ F F+ + G I + G+ LG H G +Y
Sbjct: 177 KIAKELNLVTANKKDSTGICFIGERNFKRFLKNFLPAQPGEIRSLD-GEVLGTHDGLMYY 235
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVS--RNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQR+GL + G PWYVV+KD++NNV+ V+ +N+ + + +GL
Sbjct: 236 TIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPAL-------------FSTGL 282
Query: 314 PPEEISRLQCKVRHGPGFYNCNL----------MIEHVEDGGENIAVVQLSEDDQGLAAG 363
IS + VR P + C + HV G A+V+ + + + G
Sbjct: 283 IASNISFINGDVR--PCTFACTAKFRYRQEDQKVTVHVRPNG--TALVEFEKPVKAVTPG 338
Query: 364 QFAAFYQGTRCIGSGVILE 382
Q A FY C+GS VI E
Sbjct: 339 QVAVFYDNDVCLGSAVIDE 357
>gi|378444667|ref|YP_005232299.1| 5-methylaminomethyl-2-thiouridylate-methyltrans ferase [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|378988578|ref|YP_005251742.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379700405|ref|YP_005242133.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|16419753|gb|AAL20163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|261246446|emb|CBG24256.1| 5-methylaminomethyl-2-thiouridylate-methyltrans ferase EC 2.1.1.61
[Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|323129504|gb|ADX16934.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332988125|gb|AEF07108.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 383
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 205/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I + D + I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALND--DRIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YSGEVCLGGGII 375
>gi|395242922|ref|ZP_10419910.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus hominis CRBIP
24.179]
gi|394484742|emb|CCI80918.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus hominis CRBIP
24.179]
Length = 375
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/379 (35%), Positives = 199/379 (52%), Gaps = 16/379 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G ++K W D C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDSGV---CTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW+ V Y + EY+ GRTPNPDV+CN IKF +F+D
Sbjct: 58 DVKKVADEIGIPYYSINFEKEYWERVFQYFLGEYKKGRTPNPDVMCNKEIKFKSFLDFAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK + D+ ++ KD KDQTYFLS LSQ QLK++IFPL
Sbjct: 118 DLDADYIAMGHYAK---TRVDENGVVHMMR-PKDGNKDQTYFLSQLSQDQLKKVIFPLAN 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K +VR+ A L +KDS GICF+G+ F +F++ + G ++ + G +G
Sbjct: 174 LTKPQVREIAKSAGLATAKKKDSTGICFIGERNFKKFLSEFLPAQGGEMVTPD-GKVVGH 232
Query: 253 HWGFWFYTIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR GL L PW+VV KD+K N + V + Y S +
Sbjct: 233 HAGLMYYTIGQRSGLGLGSTKESTAPWFVVGKDLKTNKLIVEQGYDSDLLYSDSLDGSEV 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ +G+P + L+C + + + + + +D N V+ E + + GQ
Sbjct: 293 SFFTGMPDHDFD-LKCTAKFRYRQPDVGITLHYKKD--TNTVHVEFDEPARAVTPGQEIV 349
Query: 368 FYQGTRCIGSGVILESWDD 386
FYQG C+GS I ++ D
Sbjct: 350 FYQGEECLGSATIDRAYKD 368
>gi|418412028|ref|ZP_12985294.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus epidermidis
BVS058A4]
gi|410891611|gb|EKS39408.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus epidermidis
BVS058A4]
Length = 372
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 206/379 (54%), Gaps = 21/379 (5%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
K ++V V +SGGVDSSV LL G+ ++K W D EN C ED
Sbjct: 3 NKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVI 59
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
AVC+Q+ +P V+ ++YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 60 AVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLG 119
Query: 136 FDYVASGHYAKV-VHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
DYVA+GHYA++ H E V D KDQTYFL+ LSQ QL +++FP+G I
Sbjct: 120 ADYVATGHYARIRRHEDGHVEMLRGV-----DNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR+ A + +L +KDS GICF+G+ F EF+++++ G +L G +G+H
Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGEMLTL-NGKKMGQHS 233
Query: 255 GFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
G +YTIGQR GL + G PW+VV K++ +NV++V + ++ D + + S S
Sbjct: 234 GLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYVEQGFHH-DALYSDYLIASD--YSF 290
Query: 313 LPPEEISR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
+ P EI +C + Y +V+ EN V +E + + GQ FY
Sbjct: 291 VNPSEIDLEKGFECTAKFR---YRQKDTKVYVQRENENSIRVTFAEPVRAITPGQAVVFY 347
Query: 370 QGTRCIGSGVILESWDDQG 388
C+G I + + ++G
Sbjct: 348 NQEVCLGGATIDDVYKNEG 366
>gi|292492808|ref|YP_003528247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosococcus halophilus Nc4]
gi|291581403|gb|ADE15860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosococcus halophilus Nc4]
Length = 367
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 196/370 (52%), Gaps = 20/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V LSGGVDSSVA L G+ + ++K W DF + +EC +D + A AV
Sbjct: 5 KVVVGLSGGVDSSVAALQLQHQGYPISGLFMKNWV--DFAD-ESECTIAQDREDAHAVTS 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + L + EYW V Y ++EYR GRTPNPD+LCN IKF AF++ + +
Sbjct: 62 LLGISLHEANFAMEYWDQVFRYFLDEYRLGRTPNPDILCNREIKFKAFLNHALELGNPLI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ +Q+ L +DK KDQ+YFL L Q QL +FPLG + K +VR
Sbjct: 122 ATGHYARI-----EQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A +LPN ++KDS GICF+G+ +F EF+ R++ G + G+ +GKH G +Y
Sbjct: 177 RIAAGANLPNHNKKDSTGICFIGERRFKEFLGRYLPAQPGE-MRTPQGELIGKHDGLMYY 235
Query: 260 TIGQRQGLRLP------GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+GL + G PW+VV KD+ N ++V++ K + L W++G
Sbjct: 236 TLGQRRGLGIGGRKNSNGAPWFVVGKDLPRNTLYVAQGGDHPWLKSQTLEANQLHWVAGQ 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP K R+ C L + +G I VV + GQ FY+
Sbjct: 296 PPSLPYLCAAKTRYRQADQPCTLT--KITNG--RIKVV-FDSPQYAVTPGQAVVFYRRDE 350
Query: 374 CIGSGVILES 383
C+G G I +
Sbjct: 351 CLGGGTITTT 360
>gi|359779893|ref|ZP_09283120.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas psychrotolerans
L19]
gi|359372509|gb|EHK73073.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas psychrotolerans
L19]
Length = 369
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 197/370 (53%), Gaps = 21/370 (5%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
G +V V +SGGVDSSV+ LL G+ ++K W ++D + C +ED+ A+A
Sbjct: 2 NGTRVIVGMSGGVDSSVSALLLKEQGYQVEGLFMKNWDEDDGTEY---CTAKEDLADAQA 58
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VCD++ + L + EYW +V + + EY+ GRTPNPD+LCN IKF AF+D ++
Sbjct: 59 VCDRIGIKLHTANFAAEYWDHVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALALGA 118
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKE 196
D +A+GHY + D + ++L D KDQ+YFL + QL R +FP+G + K
Sbjct: 119 DLIATGHYVR--RRDVDGQ---TLLLKGLDANKDQSYFLHAVGGEQLARTLFPVGELEKP 173
Query: 197 EVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256
EVR A L +KDS GICF+G+ +FS+F+ +++ G I E TG+ +G+H G
Sbjct: 174 EVRAIAELHGLATARKKDSTGICFIGERRFSDFLKQYLPAQPGDI-ETTTGEVIGRHHGL 232
Query: 257 WFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
++TIGQRQGL + G PWYV+ KD+ NV+ V + V + W+
Sbjct: 233 MYHTIGQRQGLGIGGMKDAGDDPWYVLSKDLTRNVLIVGQGNAHPWLFAEALTVSEMFWV 292
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+ L + RL KVR+ C IE G V E + + GQ FY
Sbjct: 293 NDLELAQPRRLTAKVRYRQQDQPCR--IERQNAGYR----VVFDEPQRAVTPGQSVVFYD 346
Query: 371 GTRCIGSGVI 380
G C+G GVI
Sbjct: 347 GDVCLGGGVI 356
>gi|319935498|ref|ZP_08009933.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. 29_1]
gi|319809529|gb|EFW05946.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. 29_1]
Length = 379
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 205/381 (53%), Gaps = 26/381 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIW---FQEDFENFWTE----CPWEEDMK 72
KV + LSGGVDS+VA LL G+ +++ W D T CP EED
Sbjct: 6 KVVLGLSGGVDSAVAAYLLKEQGYEVICVFMRNWDSSLNNDILGNPTNNNEICPQEEDYN 65
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AK V + + + L V EYW +V +Y +EEY GRTPNPD+LCN IKF AF+D
Sbjct: 66 DAKKVAEHLGLELRRVDFIKEYWDHVFTYFLEEYAKGRTPNPDILCNKHIKFKAFLDYAK 125
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
S++ DY+A+GHYA+V H + S++ D KDQTYFL L+Q QL+ +FP+G
Sbjct: 126 SIDADYIATGHYARVEHHLG----QDSLMLRGVDNNKDQTYFLCQLNQLQLQSSLFPIGE 181
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVRK A +LP +KDS GICF+G+ F EF+ +I G +++ +T +G+
Sbjct: 182 LTKPEVRKLAEDLNLPVAHKKDSTGICFIGERDFREFLKNYIPAKNGHMVDIQTKQIVGE 241
Query: 253 HWGFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL--- 307
H G +YTIGQR+GL + PG W+VV K+ N+++V + D+ L G+L
Sbjct: 242 HQGIMYYTIGQRKGLNIGGPGDAWFVVGKEYDQNILYVCQG----DQNDWLMSEGALITD 297
Query: 308 -KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
W+ PE S C + + ++ I ++ E V + + + GQ A
Sbjct: 298 VNWIMSQKPE--SEFSCTAKFRYRQKDNDVSIHFID---ETTIYVTFKQPIKAVTPGQAA 352
Query: 367 AFYQGTRCIGSGVILESWDDQ 387
FY C+G G I + + DQ
Sbjct: 353 VFYNDDVCLGGGTIEKVYKDQ 373
>gi|452992806|emb|CCQ95725.1| tRNA 2-thiouridylase [Clostridium ultunense Esp]
Length = 414
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/371 (37%), Positives = 199/371 (53%), Gaps = 23/371 (6%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
+ ++V V +SGGVDSSVA LL AG+ ++K W D + W C +ED +
Sbjct: 38 RKIRVVVGMSGGVDSSVAAYLLKEAGYEVIGLFMKNW---DETDEWGRCTADEDFADVRR 94
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
V Q+ +P V+ EY + V SY +EEYR GRTPNPDV+CN IKFG FM +
Sbjct: 95 VATQIGIPYYSVNFEKEYKERVFSYFLEEYRRGRTPNPDVMCNPEIKFGEFMRKALELGA 154
Query: 137 DYVASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
DYVA GHYA+V + + +L + D+ KDQ+YFL L+Q QL + +FPLG +
Sbjct: 155 DYVAMGHYARVRERNG-------LFQLLRGVDERKDQSYFLHRLNQFQLSKALFPLGERT 207
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR A + L +KDS GICF+G+ F EF++R++ G I E G L +H
Sbjct: 208 KIEVRAIAERVGLATAKKKDSTGICFIGERDFKEFLSRYLPAQPGEIRNVEDGKVLARHD 267
Query: 255 GFWFYTIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWL 310
G +YT GQR GL + G PW+V EKD+K N+++V++ + W+
Sbjct: 268 GLMYYTYGQRSGLGIGGIGTGEPWFVAEKDLKKNILYVAQGENHPALYATSLTAEEVNWV 327
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIE-HVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
+G PP R QC + + + +E VE+ G ++ + + + GQ FY
Sbjct: 328 AGSPP--ARRFQCTAKF--RYRQPDQEVEVRVEEAGR--VHLRFLQPQKAITPGQAVVFY 381
Query: 370 QGTRCIGSGVI 380
G C+G G+I
Sbjct: 382 DGEVCLGGGLI 392
>gi|339640906|ref|ZP_08662350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. oral taxon 056 str. F0418]
gi|339454175|gb|EGP66790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. oral taxon 056 str. F0418]
Length = 373
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/378 (34%), Positives = 197/378 (52%), Gaps = 20/378 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV LL G+ ++K W +D + F C ED +
Sbjct: 1 MSDNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYR 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+VV D++ +L KD KDQTYFLS LSQ QL++ +FPLG
Sbjct: 118 TLGADYVATGHYAQVVR---DKDGTIHMLR-GKDNNKDQTYFLSQLSQEQLQKTMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR A + L +KDS GICF+G+ F EF+++++ G ++ E D +G+
Sbjct: 174 LEKSEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRD-MGQ 232
Query: 253 HWGFWFYT------IGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YT +G PW+VV KD++ N+++V + +Y +
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLRQNILYVGQGFYHDNLMSTSLTASQ 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E K R+ + ++ + A V + + + GQ
Sbjct: 293 IHFTRKMPDEFTLECTAKFRYRQPDTKVTVFVKG------DKATVDFDQPQRAITPGQAV 346
Query: 367 AFYQGTRCIGSGVILESW 384
FY G C+G G+I ++
Sbjct: 347 VFYDGEECLGGGLIDNAY 364
>gi|300113744|ref|YP_003760319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosococcus watsonii C-113]
gi|299539681|gb|ADJ27998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosococcus watsonii C-113]
Length = 391
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 20/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V LSGGVDSSVA L G+ + ++K W DF + +EC +D K A+AV
Sbjct: 29 KVVVGLSGGVDSSVAALRLQQQGYPISGLFMKNWV--DFAD-ESECTVAQDKKDAQAVTS 85
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + + EYW V Y +EEYR GRTPNPD+LCN IKF F+D ++ +
Sbjct: 86 LLGISFHEANFAIEYWDRVFRYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNTLI 145
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA++ DQ+ L +DK KDQ+YFL L Q QL +FPLG + K +VR
Sbjct: 146 ATGHYARI-----DQQEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 200
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ +F EF++R++ G + + +G+H G +Y
Sbjct: 201 RIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLPAQPGEMCTPNK-ERIGQHDGLMYY 259
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+GL + G PW+VV K++ N+++V++ + L W++G
Sbjct: 260 TLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNILYVAQGRDHPWLRSLALEANQLHWVAGY 319
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP K+R+ +C L + +G I V+ GQ FYQ
Sbjct: 320 PPSLPYSCTAKIRYRQADQHCTLTA--ITNG--YIKVI-FDVPQYAATPGQAIVFYQNDE 374
Query: 374 CIGSGVILES 383
C+G G I +
Sbjct: 375 CLGGGTITTT 384
>gi|365106257|ref|ZP_09335095.1| tRNA-specific 2-thiouridylase mnmA [Citrobacter freundii
4_7_47CFAA]
gi|421847795|ref|ZP_16280927.1| tRNA-specific 2-thiouridylase MnmA [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|363642438|gb|EHL81793.1| tRNA-specific 2-thiouridylase mnmA [Citrobacter freundii
4_7_47CFAA]
gi|411770864|gb|EKS54602.1| tRNA-specific 2-thiouridylase MnmA [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|455642171|gb|EMF21337.1| tRNA-specific 2-thiouridylase MnmA [Citrobacter freundii GTC 09479]
Length = 368
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + G+ +G+H G +
Sbjct: 179 RKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GEEIGQHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQGH----EHPRLMSVGLVAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + E I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCTVKALDA----ERIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|291085497|ref|ZP_06353231.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Citrobacter youngae ATCC 29220]
gi|291071151|gb|EFE09260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Citrobacter youngae ATCC 29220]
Length = 383
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + G+ +G+H G +
Sbjct: 194 RKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GEDIGQHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQGH----EHPRLMSVGLVAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + E I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTMRCTVKTRYRQTDIPCTVKALDA----ERIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|39546313|ref|NP_460204.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167991976|ref|ZP_02573075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168264253|ref|ZP_02686226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|197263918|ref|ZP_03163992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|200391023|ref|ZP_03217634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|374980232|ref|ZP_09721562.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|378449635|ref|YP_005236994.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhimurium
str. 14028S]
gi|378699127|ref|YP_005181084.1| tRNA [Salmonella enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|378983794|ref|YP_005246949.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|383495956|ref|YP_005396645.1| tRNA [Salmonella enterica subsp. enterica serovar Typhimurium str.
798]
gi|417339276|ref|ZP_12120868.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
gi|422025383|ref|ZP_16371817.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422030389|ref|ZP_16376591.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427548954|ref|ZP_18927128.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427564609|ref|ZP_18931831.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427584456|ref|ZP_18936628.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427606870|ref|ZP_18941442.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427632057|ref|ZP_18946390.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427655226|ref|ZP_18951147.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427660562|ref|ZP_18956053.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427666414|ref|ZP_18960825.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|24638322|sp|Q8ZPZ4.2|MNMA_SALTY RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|197242173|gb|EDY24793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|199603468|gb|EDZ02014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|205329792|gb|EDZ16556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205347303|gb|EDZ33934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|267993013|gb|ACY87898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhimurium
str. 14028S]
gi|301157775|emb|CBW17268.1| Probable tRNA [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312912222|dbj|BAJ36196.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321223852|gb|EFX48915.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|357960565|gb|EHJ84372.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
[Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
gi|380462777|gb|AFD58180.1| putative tRNA [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|414020722|gb|EKT04296.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414020733|gb|EKT04306.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414022215|gb|EKT05706.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414034699|gb|EKT17617.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414035899|gb|EKT18745.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414039421|gb|EKT22092.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414049035|gb|EKT31261.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414050508|gb|EKT32679.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414055071|gb|EKT36991.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414060582|gb|EKT42091.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
Length = 368
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 205/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVNGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF +F+ R++ G I+ + GD +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGKIITVD-GDEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NNV+ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C I + D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTLRCTVKTRYRQTDIPCT--INALND--DRIEVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YSGEVCLGGGII 360
>gi|352081941|ref|ZP_08952764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Rhodanobacter sp. 2APBS1]
gi|351682079|gb|EHA65185.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Rhodanobacter sp. 2APBS1]
Length = 382
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/371 (35%), Positives = 194/371 (52%), Gaps = 21/371 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+KV + +SGGVDSSVA LL +G+ +++ W ++D C + D K A AVC
Sbjct: 1 MKVMLGISGGVDSSVAALLLQQSGYEVEGLFMQNWEEDDRAG---PCTADADRKDAVAVC 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
++ +P + EYW V ++ + EYR GRTPNPDVLCN IKF F+D ++ +
Sbjct: 58 GRLGIPFHARNFAAEYWDGVFAHFLAEYRAGRTPNPDVLCNREIKFKTFLDEARALGAEK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA++ D Y+ L + D KDQ+YFL L Q QL +FPLG I K V
Sbjct: 118 IATGHYARI--DCKDGHYR---LLRAVDAAKDQSYFLHALGQQQLAATLFPLGGIEKSRV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A LP +KDS GICF+G+ F F+A++I G + G+ +G+H G +
Sbjct: 173 REIARAAALPTHAKKDSTGICFIGERDFRGFLAQYIPACPGE-MRTPDGELIGEHQGAMY 231
Query: 259 YTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQR GL + G WYVV KDV N ++V++ + R R W++G
Sbjct: 232 YTLGQRNGLGIGGRHGASGEAWYVVGKDVTANALYVAQGGENHWLYSRRLRSEPPSWIAG 291
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P R + R+ C +++ +DG E V+ E + + GQ Y G
Sbjct: 292 AAPATRFRCTARTRYRQADQACAVVV--TDDGLE----VRFDEPQRAVTPGQSVVLYDGE 345
Query: 373 RCIGSGVILES 383
C+G VI +
Sbjct: 346 VCLGGAVIAAT 356
>gi|417851350|ref|ZP_12497105.1| tRNA-specific 2-thiouridylase MnmA [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338219680|gb|EGP05308.1| tRNA-specific 2-thiouridylase MnmA [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 366
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 205/375 (54%), Gaps = 21/375 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M + KV +SGGVDSSV+ +L G+ ++K W ++D ++ C D+
Sbjct: 1 MSENRKKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CTVAADLA 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L ++ EYW NV + ++EY+ GRTPNPD+LCN IKF AF+D A
Sbjct: 58 DAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKFKAFLDYAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ DY+A+GHY + +++ + +L D KDQ+YFL LS+ Q+ + +FP+G
Sbjct: 118 EDLGADYIATGHYVR----RGEKDGQCQLLR-GLDNNKDQSYFLYTLSKDQVAQSLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I K VR A L +KDS GICF+G+ KF +F+AR++ G I E G +G
Sbjct: 173 EIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLPAQPGKIRTVE-GKVVG 231
Query: 252 KHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
H G ++T+GQR+GL + G P+YVVEKD+ NNV+ V++ + +
Sbjct: 232 HHDGLMYHTLGQRKGLGIGGVKGMGEDPFYVVEKDLVNNVLVVAQGHDNSALLSSGLIAS 291
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
L W+ P + R K R+ +C I+ + D E I VV E + GQ
Sbjct: 292 QLHWVDRQPIRQPVRCTVKTRYRQEDISCE--IQPIND--ETIRVV-FDEPQIAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVI 380
A FYQG C+G GVI
Sbjct: 347 AVFYQGEICLGGGVI 361
>gi|237731114|ref|ZP_04561595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Citrobacter sp. 30_2]
gi|226906653|gb|EEH92571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Citrobacter sp. 30_2]
Length = 383
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 204/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL L Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVDGKSRLLR-GLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + G+ +G+H G +
Sbjct: 194 RKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GEEIGQHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 253 HTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQGH----EHPRLMSVGLVAQQLH 308
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C + E I V+ E + GQ A F
Sbjct: 309 WVDREPFTGTMRCTVKTRYRQTDIPCTVKALDA----ERIEVI-FDEPVAAVTPGQSAVF 363
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 364 YNGEVCLGGGII 375
>gi|66046419|ref|YP_236260.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
syringae B728a]
gi|75501528|sp|Q4ZRK0.1|MNMA_PSEU2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|63257126|gb|AAY38222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas syringae pv. syringae B728a]
Length = 376
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 203/374 (54%), Gaps = 25/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 13 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTEY---CTAREDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF+D + D +
Sbjct: 70 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D + + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR
Sbjct: 130 ATGHYVR----RRDIDGRTELLK-GLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L +KDS GICF+G+ +F++F+ +++ G I E G+ +G+H G ++
Sbjct: 185 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLPAQPGEIKTTE-GEVIGRHSGLMYH 243
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWLSG 312
TIGQRQGL + G PWYV+ KD++NN + V + N + + R L + W++
Sbjct: 244 TIGQRQGLGIGGLKDASDDPWYVLVKDLENNELIVGQGNDHPWLFSRALVS-SEIYWVNP 302
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ RL KVR+ G C L E DG + + + GQ FY G
Sbjct: 303 IDLSSPRRLTAKVRYRQGDQPCTL--EKTADGYR----ATFDDPQRAVTPGQSVVFYDGE 356
Query: 373 RCIGSGV--ILESW 384
C+G GV I E W
Sbjct: 357 ICLGGGVIEIAEPW 370
>gi|116513846|ref|YP_812752.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|385815466|ref|YP_005851857.1| tRNA-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418029220|ref|ZP_12667768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|122275384|sp|Q04B58.1|MNMA_LACDB RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|116093161|gb|ABJ58314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|325125503|gb|ADY84833.1| Probable tRNA-methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|354690938|gb|EHE90880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 375
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/380 (34%), Positives = 200/380 (52%), Gaps = 18/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M ++V V +SGGVDSSV+ LL G+ ++K W D N C ED +
Sbjct: 1 MVDNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNW---DDTNDDGVCTATEDYE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW+ V Y ++EY+ GRTPNPD++CNT +KF +F++
Sbjct: 58 DVKKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHYAK + E + + KD KDQTYFLS L+Q Q+KR++FPL
Sbjct: 118 DLDADYLAMGHYAKTMVD----ENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQD 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A + L N +KDS GICF+G+ F F++ + G ++ + G +G
Sbjct: 174 LTKPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPD-GKVVGH 232
Query: 253 HWGFWFYTIGQRQGLRLPG-----GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQRQGL L PW+VV KD++ N + V + Y S + +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGM 292
Query: 308 KWLSGLPPEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ +G P E+ + K R + C++ + A V E + + GQ
Sbjct: 293 TFFTGNPEEDTEFKATAKFR----YRQCDVGVTVKYYAASKTADVYFDEPARAVTPGQAL 348
Query: 367 AFYQGTRCIGSGVILESWDD 386
Y G C+G G I ++ D
Sbjct: 349 VLYNGEECLGGGNIDAAFKD 368
>gi|334882309|emb|CCB83304.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus pentosus MP-10]
gi|339639134|emb|CCC18360.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus pentosus IG1]
Length = 374
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/380 (34%), Positives = 202/380 (53%), Gaps = 17/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MTDHSNTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V D++ +P ++ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAKVADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ H D++ +L D KDQTYFLS L L++++FPLG
Sbjct: 118 DLGADYIATGHYARLQH---DEDGTMHLLR-GVDSNKDQTYFLSQLDSKTLQKVMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K +VRK A L +KDS GICF+G+ F EF+ ++ G ++ + G G+
Sbjct: 174 MIKPDVRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLPATPGKMMTFD-GQVKGE 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + G PW+V+ KD+K N+++V + Y++ + L
Sbjct: 233 HAGLMYYTIGQRRGLGIGGDGEDNEPWFVIGKDLKQNILYVGKGYHNPHLYATHLKASDL 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+++ + K R+ + + + +D E V E + + GQ
Sbjct: 293 HFVTDEDLGNDFHVTAKFRYRQK--DSGVTVHFNDDHTE--VTVTFDEPVRAITPGQAVV 348
Query: 368 FYQGTRCIGSGVILESWDDQ 387
FY G C+GSG+I +++D+
Sbjct: 349 FYNGEECLGSGMIDAAYNDE 368
>gi|410641507|ref|ZP_11352027.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola chathamensis S18K6]
gi|410139040|dbj|GAC10214.1| tRNA-specific 2-thiouridylase mnmA [Glaciecola chathamensis S18K6]
Length = 396
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/372 (36%), Positives = 206/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ +L G+ ++K W ++D + + C ED+K A+AV D
Sbjct: 38 KVIVGMSGGVDSSVSAYILLQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVAD 94
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV Y +EEY+ GRTPNPD++CN IKF AF++ A +E DY
Sbjct: 95 KLGIELHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFKAFLEFAAEELEADY 154
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D ++ + D KDQ+YFL L + + + +FP+G I K V
Sbjct: 155 IATGHYVR--RREVDGHWQ---MLRGMDDNKDQSYFLYTLGEQHVGQTLFPIGDIEKPHV 209
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ KF++F+++++ GVI E G +G+H G +
Sbjct: 210 REIAQEQGLITHDKKDSTGICFIGERKFTDFLSQYLPAQPGVI-ETPEGQEIGQHQGLMY 268
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KD+ NV+ V + RLF G L
Sbjct: 269 HTLGQRKGLMIGGMKEFGDDPWYVVDKDMARNVLIVGQGA----DHPRLFSKGLVANQLH 324
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ + P + K R+ C+L ++ DG A V + + + GQ A F
Sbjct: 325 WVDRVGPTCAIKCSVKTRYRQEDIPCSLTLD--SDGS---ARVIFDQPQKAVTPGQSAVF 379
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 380 YLNEVCLGGGII 391
>gi|407712145|ref|YP_006832710.1| tRNA-specific 2-thiouridylase [Burkholderia phenoliruptrix BR3459a]
gi|407234329|gb|AFT84528.1| tRNA-specific 2-thiouridylase [Burkholderia phenoliruptrix BR3459a]
Length = 381
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 195/369 (52%), Gaps = 22/369 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W +D + C +D +V D
Sbjct: 5 KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D S+ + +
Sbjct: 62 LIGIDVEAVNFASEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V ++ E L + D KDQ+YFL L+QAQL + +FPLG I K +VR
Sbjct: 122 ATGHYARVRENNGRFE-----LLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ F +F+ R++ G ++ G +G+H G FY
Sbjct: 177 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLPTQPGP-MKTTDGKVVGEHIGLAFY 235
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T GQR+G+ L G PW+V KD+ +N ++V++ + G+ W++G
Sbjct: 236 TFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHTLTAGNTSWVAGE 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQ--GLAAGQFAAFYQG 371
PP E K R+ C GG+ + QL+ DD + GQ A Y G
Sbjct: 296 PPAEGFACGAKTRYRQADARCTFGAAGA--GGD---LFQLTFDDAQWAVTPGQSAVLYDG 350
Query: 372 TRCIGSGVI 380
C+G G+I
Sbjct: 351 DVCLGGGII 359
>gi|423119786|ref|ZP_17107470.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella oxytoca 10-5246]
gi|376397482|gb|EHT10114.1| tRNA-specific 2-thiouridylase mnmA [Klebsiella oxytoca 10-5246]
Length = 383
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 203/368 (55%), Gaps = 21/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 22 KVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 78
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 79 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 139 IATGHYVR----RADVNGKSQLLR-GLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 193
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A DL +KDS GICF+G+ KF EF+ R++ G I+ + GD +G+H G +
Sbjct: 194 RKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVD-GDEIGEHQGLMY 252
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + R L W+
Sbjct: 253 HTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGHDHPRLMSRGLIAQQLHWVDR 312
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P R K R+ C + +++ E I V+ E + GQ A FY G
Sbjct: 313 EPVTGTLRCTVKTRYRQTDIPCT--VNALDN--ERIEVL-FDEPVAAVTPGQSAVFYLGE 367
Query: 373 RCIGSGVI 380
C+G GVI
Sbjct: 368 VCLGGGVI 375
>gi|242242895|ref|ZP_04797340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis W23144]
gi|420174617|ref|ZP_14681066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM061]
gi|242233670|gb|EES35982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis W23144]
gi|394244848|gb|EJD90180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM061]
Length = 372
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/379 (35%), Positives = 206/379 (54%), Gaps = 21/379 (5%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
K ++V V +SGGVDSSV LL G+ ++K W D EN C ED
Sbjct: 3 NKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVI 59
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
AVC+Q+ +P V+ ++YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 60 AVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLG 119
Query: 136 FDYVASGHYAKV-VHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
DYVA+GHYA++ H E V D KDQTYFL+ LSQ QL +++FP+G +
Sbjct: 120 ADYVATGHYARIRRHEDGHVEMLRGV-----DNNKDQTYFLNQLSQEQLSKVMFPIGDVE 174
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR+ A + +L +KDS GICF+G+ F EF+++++ G +L G +G+H
Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGEMLTL-NGKKMGQHS 233
Query: 255 GFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
G +YTIGQR GL + G PW+VV K++ +N+++V + ++ D + + S S
Sbjct: 234 GLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNILYVEQGFHH-DALYSDYLIASD--FSF 290
Query: 313 LPPEEISR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
+ P EI +C + Y +V+ EN V +E + + GQ FY
Sbjct: 291 VNPSEIDLEKGFECTAKFR---YRQKDTKVYVQRENENSIRVTFAEPVRAITPGQAVVFY 347
Query: 370 QGTRCIGSGVILESWDDQG 388
C+G I + + ++G
Sbjct: 348 NQEVCLGGATIDDVYKNEG 366
>gi|27468222|ref|NP_764859.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus epidermidis ATCC
12228]
gi|57867112|ref|YP_188761.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus epidermidis
RP62A]
gi|282875953|ref|ZP_06284820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis SK135]
gi|293366421|ref|ZP_06613099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis M23864:W2(grey)]
gi|417656120|ref|ZP_12305811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU028]
gi|417659610|ref|ZP_12309210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU045]
gi|417908503|ref|ZP_12552260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU037]
gi|417911282|ref|ZP_12554989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU105]
gi|417912577|ref|ZP_12556266.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU109]
gi|418603657|ref|ZP_13167039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU041]
gi|418606204|ref|ZP_13169496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU057]
gi|418609257|ref|ZP_13172416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU065]
gi|418611771|ref|ZP_13174840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU117]
gi|418616459|ref|ZP_13179384.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU120]
gi|418621276|ref|ZP_13184055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU123]
gi|418623422|ref|ZP_13186133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU125]
gi|418626109|ref|ZP_13188735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU126]
gi|418628160|ref|ZP_13190717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU127]
gi|418664075|ref|ZP_13225571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU081]
gi|419769340|ref|ZP_14295436.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus IS-250]
gi|419771420|ref|ZP_14297474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus IS-K]
gi|420165605|ref|ZP_14672296.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM088]
gi|420170324|ref|ZP_14676885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM070]
gi|420172670|ref|ZP_14679169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM067]
gi|420183279|ref|ZP_14689412.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM049]
gi|420187177|ref|ZP_14693199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM039]
gi|420202343|ref|ZP_14707936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM018]
gi|420209123|ref|ZP_14714561.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM003]
gi|420214077|ref|ZP_14719357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH05005]
gi|420216227|ref|ZP_14721443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH05001]
gi|420220562|ref|ZP_14725521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH04008]
gi|420221595|ref|ZP_14726523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH08001]
gi|420225814|ref|ZP_14730641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH06004]
gi|420227409|ref|ZP_14732177.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH05003]
gi|420229723|ref|ZP_14734427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH04003]
gi|420232134|ref|ZP_14736775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH051668]
gi|420234779|ref|ZP_14739339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH051475]
gi|421606887|ref|ZP_16048139.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus epidermidis
AU12-03]
gi|30173406|sp|Q8CSA5.1|MNMA_STAES RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|71153357|sp|Q5HNS9.1|MNMA_STAEQ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|27315768|gb|AAO04903.1|AE016748_137 (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis ATCC 12228]
gi|57637770|gb|AAW54558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis RP62A]
gi|281294978|gb|EFA87505.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis SK135]
gi|291319455|gb|EFE59823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis M23864:W2(grey)]
gi|329735247|gb|EGG71539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU045]
gi|329737370|gb|EGG73624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU028]
gi|341653605|gb|EGS77372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU105]
gi|341655864|gb|EGS79587.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU037]
gi|341657287|gb|EGS80977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU109]
gi|374407166|gb|EHQ78031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU041]
gi|374408262|gb|EHQ79094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU065]
gi|374408994|gb|EHQ79798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU057]
gi|374410875|gb|EHQ81605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU081]
gi|374821285|gb|EHR85352.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU120]
gi|374821782|gb|EHR85829.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU117]
gi|374829888|gb|EHR93682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU123]
gi|374830624|gb|EHR94390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU125]
gi|374833732|gb|EHR97403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU126]
gi|374838543|gb|EHS02083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis VCU127]
gi|383358409|gb|EID35868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus IS-250]
gi|383361646|gb|EID39016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus IS-K]
gi|394235406|gb|EJD80978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM088]
gi|394240662|gb|EJD86085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM070]
gi|394241831|gb|EJD87240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM067]
gi|394249742|gb|EJD94955.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM049]
gi|394256615|gb|EJE01544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM039]
gi|394269751|gb|EJE14281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM018]
gi|394279351|gb|EJE23659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIHLM003]
gi|394283999|gb|EJE28160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH05005]
gi|394285915|gb|EJE29981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH04008]
gi|394290390|gb|EJE34251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH08001]
gi|394292317|gb|EJE36076.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH05001]
gi|394293248|gb|EJE36971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH06004]
gi|394297033|gb|EJE40645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH05003]
gi|394298902|gb|EJE42460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH04003]
gi|394301457|gb|EJE44913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH051668]
gi|394304022|gb|EJE47432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus epidermidis NIH051475]
gi|406657467|gb|EKC83854.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus epidermidis
AU12-03]
Length = 372
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 205/379 (54%), Gaps = 21/379 (5%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
K ++V V +SGGVDSSV LL G+ ++K W D EN C ED
Sbjct: 3 NKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVI 59
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
AVC+Q+ +P V+ ++YW V +Y ++EY+ GRTPNPDV+CN IKF AF++ +
Sbjct: 60 AVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLG 119
Query: 136 FDYVASGHYAKV-VHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCIS 194
DYVA+GHYA++ H E V D KDQTYFL+ LSQ QL +++FP+G I
Sbjct: 120 ADYVATGHYARIRRHDDGHVEMLRGV-----DNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174
Query: 195 KEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHW 254
K EVR+ A + +L +KDS GICF+G+ F EF++ ++ G +L G +G+H
Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSHYLPAQSGEMLTL-NGKKMGQHS 233
Query: 255 GFWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
G +YTIGQR GL + G PW+VV K++ +NV++V + ++ D + + S S
Sbjct: 234 GLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYVEQGFHH-DALYSDYLIASD--YSF 290
Query: 313 LPPEEISR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY 369
+ P EI +C + Y +V+ EN V +E + + GQ FY
Sbjct: 291 VNPSEIDLEKGFECTAKFR---YRQKDTKVYVQRENENSIRVTFAEPVRAITPGQAVVFY 347
Query: 370 QGTRCIGSGVILESWDDQG 388
C+G I + + ++G
Sbjct: 348 NQEVCLGGATIDDVYKNEG 366
>gi|53720497|ref|YP_109483.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei
K96243]
gi|126440060|ref|YP_001060365.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei 668]
gi|167817350|ref|ZP_02449030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 91]
gi|167904220|ref|ZP_02491425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei NCTC 13177]
gi|217421190|ref|ZP_03452695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 576]
gi|81379110|sp|Q63QY5.1|MNMA_BURPS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205813851|sp|A3NDE4.1|MNMA_BURP6 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|52210911|emb|CAH36899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei K96243]
gi|126219553|gb|ABN83059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 668]
gi|217396602|gb|EEC36619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 576]
Length = 383
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 193/367 (52%), Gaps = 17/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + C +D +V D
Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D S+ +
Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V E L + D KDQ+YFL L+QAQL + +FPLG I K VR
Sbjct: 122 ATGHYARVRERDGRFE-----LLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ F +F+ R++ G ++ G +G+H G FY
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGP-MKTPDGKTVGEHIGLAFY 235
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T GQR+G+ L G PW+V KD+ +N ++V + + + R G++ W++G
Sbjct: 236 TFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAGE 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + +R K R+ C + G E ++V E + GQ A Y G
Sbjct: 296 PPADGARCGAKTRYRQADAPCAFG-RAAQAGDERFSLV-FDEPQWAVTPGQSAVLYDGDV 353
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 354 CLGGGII 360
>gi|417903104|ref|ZP_12546959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus 21269]
gi|341850278|gb|EGS91402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus 21269]
Length = 372
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 131/375 (34%), Positives = 204/375 (54%), Gaps = 13/375 (3%)
Query: 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAK 75
K ++V V +SGGVDSSV +L G+ ++K W D EN C ED
Sbjct: 3 NKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYNDVI 59
Query: 76 AVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME 135
VC+Q+ +P V+ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D ++
Sbjct: 60 EVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLG 119
Query: 136 FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
DYVA+GHYA+ +H D + + D KDQTYFL+ LSQ QL +++FP+G I K
Sbjct: 120 ADYVATGHYAR-IHRHEDGHVE---MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEK 175
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
EVR+ A + L +KDS GICF+G+ F F+++++ G ++ + G +GKH G
Sbjct: 176 SEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLD-GKKMGKHSG 234
Query: 256 FWFYTIGQRQGLRL--PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
+YTIGQR GL + G PW+VV K++K+NV++V + ++ +++
Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPE 294
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
+ L+C + + + ++ D + V +E + + GQ FYQG
Sbjct: 295 DNDLDQGLECTAKFRYRQKDTKVFVKREND---HALRVTFAEPVRAITPGQAVVFYQGDV 351
Query: 374 CIGSGVILESWDDQG 388
C+G I + + ++G
Sbjct: 352 CLGGATIDDVFKNEG 366
>gi|331006794|ref|ZP_08330060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium IMCC1989]
gi|330419412|gb|EGG93812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium IMCC1989]
Length = 426
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 127/379 (33%), Positives = 201/379 (53%), Gaps = 15/379 (3%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
+S S P + +V V +SGGVDSSV LL G+ ++K W ++D + C +
Sbjct: 51 MSISSPLPQETRVMVGMSGGVDSSVTALLLQQQGYLVEGLFMKNWDEDDGTEY---CSAK 107
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
+D+ A+ VCD + + L + EYW NV Y ++EY+ GRTPNPD+LCN IKF F+
Sbjct: 108 DDLADAQRVCDTLGITLHTANFAAEYWDNVFEYFLDEYKAGRTPNPDILCNREIKFKVFL 167
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
D + D +A+GHY + + +L+ D KDQ+YFL + QL + +F
Sbjct: 168 DYAQVLGADMIATGHYVRRDDYFNNSAGSTRLLK-GCDNNKDQSYFLHAVGGEQLAKTLF 226
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
P+G + K VR A Q +L ++KDS GICF+G+ +F +F+ +++ EG I+ + G
Sbjct: 227 PVGELEKPAVRLLAEQHNLITHNKKDSTGICFIGERRFKDFLEQYLPAQEGEIV-TDKGQ 285
Query: 249 FLGKHWGFWFYTIGQRQGLRL------PGGPWYVVEKDV-KNNVVFVSRNYYSFDKKRRL 301
+GKH G ++T+GQRQGL + P PWYVV+KD+ KN ++ V + + +RL
Sbjct: 286 VIGKHAGLMYHTMGQRQGLGIGGVKNAPDAPWYVVDKDLDKNQLIVVQGDQHPLLYHQRL 345
Query: 302 FRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
+ W++ + + R K+R+ C + + D ++ V E + +
Sbjct: 346 -TATDMHWINPSDQDAVFRCHAKIRYRQADQACEVTVS--RDNNDSSISVIFDEPQRAVT 402
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ Y G C+G VI
Sbjct: 403 PGQSIVLYDGEHCLGGAVI 421
>gi|408824673|ref|ZP_11209563.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas geniculata N1]
Length = 380
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 193/367 (52%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA L G + +++ W ++ +C E+D + A AVC
Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWA----DDGSGDCRAEDDRRDAVAVCG 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + EYW+ V + + EY GRTPNPDVLCN +KF F+DA + + +
Sbjct: 61 LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V Q +L D+ KDQ+YFL L Q QL +FP+G + K ++R
Sbjct: 121 ATGHYARVT-----QRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLR 175
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A LP +KDS GICF+G+ F EF+ R++ G IL+ G + +H G +++
Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAEHPGVFYF 235
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+GL + P PWYVV KDV +NV++V ++ S R + W++G
Sbjct: 236 TLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSDRLRSETAHWIAGA 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + R+ C +E ++DG +V + + + GQ Y G
Sbjct: 296 PPARRFECTAQTRYRQPDEPCT--VEVLDDGS---VLVTFARPQRAVTPGQSLVLYDGDV 350
Query: 374 CIGSGVI 380
C+G VI
Sbjct: 351 CLGGAVI 357
>gi|171464102|ref|YP_001798215.1| tRNA-specific 2-thiouridylase MnmA [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193640|gb|ACB44601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Polynucleobacter necessarius subsp. necessarius STIR1]
Length = 370
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 196/379 (51%), Gaps = 24/379 (6%)
Query: 10 SCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE 69
S S+P + KV + +SGGVDSSVA +L G ++K W +D + + C +
Sbjct: 6 SSSIPSSRPKKVVIGMSGGVDSSVAAWMLKEQGFEVIGLFMKNWEDDDSDEY---CSARQ 62
Query: 70 DMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 129
D +V D + + +E V+ EY + V + + EY GRTPNPDVLCN IKF AF+D
Sbjct: 63 DWLDVVSVADMIGIDVEAVNFATEYRECVFADFLREYAAGRTPNPDVLCNAEIKFKAFLD 122
Query: 130 AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFP 189
S+ D +A+GHYA+V H S + +V D KDQ+YFL L+Q QL ++FP
Sbjct: 123 HAMSLGADAIATGHYARVRHESGKVQLLKAV-----DVSKDQSYFLHRLTQQQLANVMFP 177
Query: 190 LGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDF 249
LG I K EVRK A Q L N +KDS GICF+G+ F EF+ R++ + G I E G
Sbjct: 178 LGEIPKTEVRKIADQIGLHNAKKKDSTGICFIGERPFREFLNRYLPRVPGPIKTPE-GKT 236
Query: 250 LGKHWGFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR 303
+G+H G F+T+GQR+G+ L G WYV KD+ NN ++V++ + +
Sbjct: 237 VGEHMGLAFFTLGQRKGIGLGGSQDGNGDAWYVARKDIPNNTLYVAQGHEHPWLLAKTLS 296
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQ--GLA 361
W+SG P + K R+ C + G +LS D +
Sbjct: 297 AMDASWVSGEVP-SLGSYSAKTRYRQADSACTM------SAGAEAQSFELSFLDAQWAVT 349
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A Y G C+G G+I
Sbjct: 350 PGQSAVLYDGDICLGGGII 368
>gi|397687482|ref|YP_006524801.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri DSM 10701]
gi|395809038|gb|AFN78443.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri DSM 10701]
Length = 376
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 204/374 (54%), Gaps = 25/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C ++D+ A+AVCD
Sbjct: 13 RVIVGMSGGVDSSVSALLLLEQGYQVEGLFMKNWEEDDGTEY---CTAKDDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D + D +
Sbjct: 70 KIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D + + +L+ D KDQ+YFL + Q+ R +FP+G + K +VR
Sbjct: 130 ATGHYVR----RRDLDGRSELLK-GLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A ++ L +KDS GICF+G+ +FS+F+ +++ G I E GD +G+H G ++
Sbjct: 185 AIAEKYALATAKKKDSTGICFIGERRFSDFLKQYLPAQPGDI-ETIDGDVIGRHHGLMYH 243
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWLSG 312
TIGQRQGL + G PWYV+ KD++ NV+ V + N + + R L+ + W++
Sbjct: 244 TIGQRQGLGIGGLKDAGDDPWYVLSKDLQRNVLIVGQGNDHPWLFSRALY-ASEIYWVNP 302
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
L RL KVR+ G C L H DG V + + GQ Y G
Sbjct: 303 LDLSGPLRLTAKVRYRQGDQACTL--HHGPDGYR----VVFDSPQRAVTPGQSVVLYDGE 356
Query: 373 RCIGSGVI--LESW 384
C+G GVI E W
Sbjct: 357 VCLGGGVIERAEPW 370
>gi|386079824|ref|YP_005993349.1| tRNA-specific 2-thiouridylase MnmA [Pantoea ananatis PA13]
gi|354989005|gb|AER33129.1| tRNA-specific 2-thiouridylase MnmA [Pantoea ananatis PA13]
Length = 370
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/374 (37%), Positives = 205/374 (54%), Gaps = 29/374 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C +D+ A+AVCD
Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAADDLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + +EEY+ GRTPNPD+LCN IKF AF++ A + D+
Sbjct: 65 KLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + S S L +D KDQ+YFL LS Q+ + +FP+G + K EV
Sbjct: 125 IATGHYVRRQDSDGR-----SHLLRGRDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + +L +KDS GICF+G+ KF EF+AR++ G I E G +G+H G +
Sbjct: 180 RRIAEELELITAKKKDSTGICFIGERKFREFLARYLPAQPGEI-ETVDGQVVGEHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV N + V++ RL VG L
Sbjct: 239 HTLGQRKGLGIGGMKESKDDPWYVVDKDVARNRLIVAQG----GDHPRLMSVGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ + G++ V+ E + GQ A F
Sbjct: 295 WVDRQPLRAPLRCTVKTRYRQTDIPCEIIPQ-----GDDKIEVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVILE 382
Y G C+G G+I E
Sbjct: 350 YLGDVCLGGGIIEE 363
>gi|320540371|ref|ZP_08040021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Serratia symbiotica str. Tucson]
gi|320029302|gb|EFW11331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Serratia symbiotica str. Tucson]
Length = 366
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 203/372 (54%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 8 KVIVGISGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAAADLADAQAVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV +EEY+ GRTPNPD+LCN IKF AF++ A ++ D+
Sbjct: 65 KLGIKLHTVNFAAEYWDNVFELFLEEYQAGRTPNPDILCNKEIKFKAFLEFAAEDLDADF 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 125 IATGHYVR----RQDVDGKSHLLR-GIDSNKDQSYFLYTLSHEQVAQSLFPVGELKKPQV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A Q L +KDS GICF+G+ KF +F+ R++ G+I + G +GKH G +
Sbjct: 180 RCIAEQLALVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGLIASVD-GQTVGKHQGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV NN++ V++ + RL G L
Sbjct: 239 HTLGQRKGLGIGGMKDSSEEPWYVVDKDVANNMLVVAQGH----DHPRLMSAGLIAQQLH 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ +P E R K R Y ++ V + V+ E + GQ A F
Sbjct: 295 WVDRMPRSEPFRCTVKTR-----YRQQDILCRVTPLDDQRIEVRFDEPVAAVTPGQSAVF 349
Query: 369 YQGTRCIGSGVI 380
YQG C+G G+I
Sbjct: 350 YQGEICLGGGII 361
>gi|402494401|ref|ZP_10841143.1| tRNA-specific 2-thiouridylase MnmA [Aquimarina agarilytica ZC1]
Length = 386
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/391 (35%), Positives = 202/391 (51%), Gaps = 38/391 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V LSGGVDSSVA LL G+ ++K W +D ECPW +D A V +
Sbjct: 3 RVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNW-HDDSVTISDECPWLDDSNDALLVAE 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P + V L+++Y + +V Y+ EY GRTPNPDVLCN IKF FM + DYV
Sbjct: 62 KLGIPFQTVDLSEQYKERIVDYMFAEYEKGRTPNPDVLCNREIKFDVFMKIALELGADYV 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D+E +L KD KDQ+YFL LSQ QL + +FP+G + K EVR
Sbjct: 122 ATGHYCRKDTIEIDEELTHRLLA-GKDSNKDQSYFLCQLSQEQLAKTLFPVGELIKPEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAET------------- 246
K A + DL ++KDSQG+CF+GK++ EF+ + + G I+E
Sbjct: 181 KIAAEQDLITAEKKDSQGLCFIGKVRLPEFLQQQLKPKNGAIIEIAADHAIYDHADAPSQ 240
Query: 247 ----------GDFLGKHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFV--SRNY 292
G +G H G ++T GQR+GL + G P +V+E DV N ++V + +
Sbjct: 241 LHNYNYVPNDGKKVGVHIGAHYFTKGQRKGLSVGGTPLPLFVIETDVATNTIYVGQGKEH 300
Query: 293 YSFDKKRRLFRVGSLKWLS---GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIA 349
+ + L + L W+ L E+ ++ ++R+ N +I E+G
Sbjct: 301 PGLYRSQLLVKSNELHWVRTDLALKQGELMPVKARIRYRQNLENA--IINLTEEG----L 354
Query: 350 VVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
VV+ + GQF A+Y IGSGVI
Sbjct: 355 VVRFENPQSAIQEGQFVAWYLEDELIGSGVI 385
>gi|319764949|ref|YP_004128886.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Alicycliphilus denitrificans BC]
gi|317119510|gb|ADV01999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alicycliphilus denitrificans BC]
Length = 373
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/377 (37%), Positives = 197/377 (52%), Gaps = 32/377 (8%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V LSGGVDS+V LL GH ++K W +D + C +D A +V D
Sbjct: 8 RVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSEY---CSSRQDFLDAASVAD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY+ GRTPNPDVLCN IKF AF+D + + +
Sbjct: 65 VIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V H+ A + EL K D KDQ+YFL L+Q QL R +FP+G + K E
Sbjct: 125 ATGHYARVRHNPAT-----GLFELLKGLDPAKDQSYFLHRLNQEQLARTLFPVGELRKTE 179
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + LPN +KDS GICF+G+ F EF+ R+I G IL+ + G LG+H G
Sbjct: 180 VRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYISHEPGPILD-DRGRRLGRHVGLS 238
Query: 258 FYTIGQRQGLRLPG-------------GPWYVVEKDVKNNVVFVSRNY-YSFDKKRRLFR 303
FYT+GQRQGL + G PW+V K++ N + V + + + + RL
Sbjct: 239 FYTLGQRQGLGIGGVKEKGAQRGGGEHAPWFVARKELATNTLRVVQGHDHPWLLSHRL-A 297
Query: 304 VGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
W++G PP K R+ C ++ GG +Q SE + G
Sbjct: 298 AQDASWVAGRPPAP-GACAAKTRYRQQDAACTVL---AAQGG--AFSLQFSEAQWAVTPG 351
Query: 364 QFAAFYQGTRCIGSGVI 380
Q A Y G C+G GVI
Sbjct: 352 QSAVLYDGEVCLGGGVI 368
>gi|424668709|ref|ZP_18105734.1| tRNA-specific 2-thiouridylase mnmA [Stenotrophomonas maltophilia
Ab55555]
gi|401072045|gb|EJP80554.1| tRNA-specific 2-thiouridylase mnmA [Stenotrophomonas maltophilia
Ab55555]
Length = 380
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 193/367 (52%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA L G + +++ W ++ +C E+D + A AVC
Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWA----DDGSGDCRAEDDRRDAVAVCG 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + EYW+ V + + EY GRTPNPDVLCN +KF F+DA + + +
Sbjct: 61 LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V Q +L D+ KDQ+YFL L Q QL +FP+G + K ++R
Sbjct: 121 ATGHYARVT-----QRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLR 175
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A LP +KDS GICF+G+ F EF+ R++ G IL+ G + +H G +++
Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGRILDPADGSVIAEHPGVFYF 235
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+GL + P PWYVV KDV +NV++V ++ S R + W++G
Sbjct: 236 TLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIAGS 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + R+ C + + ++DG +V + + + GQ Y G
Sbjct: 296 PPARCFECTAQTRYRQPDEPCTVQV--LDDGS---VLVTFARPQRAVTPGQSLVLYDGDV 350
Query: 374 CIGSGVI 380
C+G VI
Sbjct: 351 CLGGAVI 357
>gi|422850451|ref|ZP_16897121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK150]
gi|325695737|gb|EGD37636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK150]
Length = 373
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/378 (35%), Positives = 196/378 (51%), Gaps = 20/378 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 1 MSDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V DQE +L KD KDQTYFLS LSQ QL++ +FPLG
Sbjct: 118 TLGADYVATGHYAQV---KRDQEGVVHMLR-GKDNNKDQTYFLSQLSQEQLQKTMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR A + L +KDS GICF+G+ F EF+++++ G ++ E D +G+
Sbjct: 174 LEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRD-MGQ 232
Query: 253 HWGFWFYT------IGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YT +G PW+VV KD+ N+++V + +Y +
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E K R+ + ++ + AVV + + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVAVKG------DKAVVNVDQPQRAVTPGQAV 346
Query: 367 AFYQGTRCIGSGVILESW 384
FY G C+G G+I ++
Sbjct: 347 VFYDGDECLGGGLIDRAY 364
>gi|417706878|ref|ZP_12355927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri VA-6]
gi|333004970|gb|EGK24490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shigella flexneri VA-6]
Length = 368
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 207/372 (55%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A+AVCD
Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + AD + K +L D KDQ+YFL LS Q+ + +FP+G + K +V
Sbjct: 124 IATGHYVR----RADVDGKSRLLR-GLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
RK A L +KDS GICF+G+ KF EF+ R++ G I+ + G +G+H G +
Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVD-GHEIGEHQGLMY 237
Query: 259 YTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN++ V++ + + RL VG L
Sbjct: 238 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGH----EHPRLMSVGLIAQQLH 293
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P R K R+ C ++ ++D + I V+ E + GQ A F
Sbjct: 294 WVDREPFTGTMRCTVKTRYRQTDIPCT--VKALDD--DRIKVI-FDEPVAAVTPGQSAVF 348
Query: 369 YQGTRCIGSGVI 380
Y G C+G G+I
Sbjct: 349 YNGEVCLGGGII 360
>gi|336054334|ref|YP_004562621.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus kefiranofaciens
ZW3]
gi|333957711|gb|AEG40519.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus kefiranofaciens
ZW3]
Length = 375
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 126/370 (34%), Positives = 196/370 (52%), Gaps = 16/370 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W D C ED + K V D
Sbjct: 8 RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDAGV---CTATEDYEDVKKVAD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ +P ++ EYW V Y + EY+ GRTPNPD++CN++IKF +F+D ++ DY+
Sbjct: 65 KIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDIMCNSQIKFKSFLDFAMDLDADYI 124
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A GHYAK + + + + KD KDQTYFLS L+Q Q+ ++IFPL ++K +VR
Sbjct: 125 AMGHYAKTMKDANGVTH----MMRPKDGNKDQTYFLSQLNQEQISKVIFPLANLTKPQVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + L +KDS GICF+G+ F +F++ + G ++ + G +G+H G +Y
Sbjct: 181 EIALENGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPD-GKVVGEHAGLMYY 239
Query: 260 TIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
TIGQRQGL L PW+VV KD+K N + V + Y S + + + +G P
Sbjct: 240 TIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDMSFFTGQP 299
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
+ + C + + C++ + +N A V E + + GQ Y G C
Sbjct: 300 DHDF-EIHCSAKF--RYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYNGEEC 356
Query: 375 IGSGVILESW 384
+G G I ++
Sbjct: 357 LGGGNIDAAY 366
>gi|258546108|ref|ZP_05706342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cardiobacterium hominis ATCC 15826]
gi|258518660|gb|EEV87519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cardiobacterium hominis ATCC 15826]
Length = 369
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 206/372 (55%), Gaps = 26/372 (6%)
Query: 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA 76
+G K+AV +SGGVDSSVA LL AG+ ++K W +E + + + C EED++ A+
Sbjct: 8 QGAKIAVGISGGVDSSVAALLLRDAGYDVFGIFMKNW-EETYSSGY--CSAEEDVEDARD 64
Query: 77 VCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF 136
VC+ + +PL V+ EY + V + + EY GRTPNPD+LCN IKF + +
Sbjct: 65 VCETLGIPLHTVNFVAEYHERVFRHFLAEYGAGRTPNPDILCNREIKFAEMAHYAAELGA 124
Query: 137 DYVASGHYAKV-VHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISK 195
DY+A+GHYA+ H A YK D KDQ+YFLS ++ AQL + +FPLG ++K
Sbjct: 125 DYLATGHYARRGTHHGAPALYK------GVDGSKDQSYFLSQITPAQLDKALFPLGGMAK 178
Query: 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWG 255
+VR+ A Q L D+KDS GICF+G+ F +F+A + G ++ + G ++G+H G
Sbjct: 179 SDVRRIAEQAGLVTYDKKDSTGICFIGERPFRDFLANYFENKPGKMITPQ-GVWVGEHIG 237
Query: 256 FWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKW 309
+YTIGQRQGL + G PWYV++K+ +N + V + + L L W
Sbjct: 238 LMYYTIGQRQGLGIGGIAGASEEPWYVLDKNPADNTLIVGQGEHPLLYHDTL-TARQLAW 296
Query: 310 LSGLPPEEISRL-QCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
L+ P E R+ Q K R+ C + + GE+ VQ E + + GQ+
Sbjct: 297 LNEAP--EAGRVYQAKTRYRQPDQPCRITWQ-----GEDEITVQFDEPQRAITPGQYLVL 349
Query: 369 YQGTRCIGSGVI 380
Y G RC+G GVI
Sbjct: 350 YDGERCLGGGVI 361
>gi|408411383|ref|ZP_11182543.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sp. 66c]
gi|409350252|ref|ZP_11233438.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus equicursoris CIP
110162]
gi|407874458|emb|CCK84349.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sp. 66c]
gi|407877576|emb|CCK85496.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus equicursoris CIP
110162]
Length = 375
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 134/379 (35%), Positives = 201/379 (53%), Gaps = 20/379 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M + ++V V +SGGVDSSVA LL G+ ++K W + C ED +
Sbjct: 1 MVDKSKIRVVVGMSGGVDSSVAALLLKRQGYDVVGVFMKNWDDTRDDGI---CTATEDFE 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
K V D++ +P ++ EYW+ V Y ++EY+ GRTPNPD++CNT IKF +F+D
Sbjct: 58 DVKKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLDYAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+++ DY+A GHYAK + D + ++ KD KDQTYFLS LSQ Q+K+++FPL
Sbjct: 118 NLDADYLAMGHYAKTM---VDDQGVTHMMR-PKDGNKDQTYFLSQLSQEQIKKVMFPLQD 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
++K EVR+ A + L +KDS GICF+G+ F F++ + G ++ + G +G
Sbjct: 174 LTKPEVRQIAEEAGLATAKKKDSTGICFIGERNFKHFLSEFLPAQAGDMVTPD-GQVVGH 232
Query: 253 HWGFWFYTIGQRQGLRL-----PGGPWYVVEKDVKNNVVFVSRNYYS-FDKKRRLFRVGS 306
H G +YTIGQRQGL L PW+VV KD+ N + V + Y S RL G
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLSKNQLIVEQGYDSPLLYADRLVASG- 291
Query: 307 LKWLSGLPPEEIS-RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
+ + +G P ++ + K R + C++ + A V E + + GQ
Sbjct: 292 MTFFTGNPDHDVEFKATAKFR----YRQCDVGVYVKYHAATKTADVYFDEPARAVTPGQA 347
Query: 366 AAFYQGTRCIGSGVILESW 384
Y G C+G G I +W
Sbjct: 348 LVLYNGEECLGGGNIDAAW 366
>gi|167920433|ref|ZP_02507524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei BCC215]
gi|237813753|ref|YP_002898204.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei
MSHR346]
gi|254180696|ref|ZP_04887294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 1655]
gi|184211235|gb|EDU08278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei 1655]
gi|237503455|gb|ACQ95773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia pseudomallei MSHR346]
Length = 383
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 193/367 (52%), Gaps = 17/367 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV LL G+ ++K W +D + C +D +V D
Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY GRTPNPDVLCN IKF AF+D S+ +
Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V E L + D KDQ+YFL L+QAQL + +FPLG I K VR
Sbjct: 122 ATGHYARVRERDGRFE-----LLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A Q LPN +KDS GICF+G+ F +F+ R++ G ++ G +G+H G FY
Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGP-MKTPDGKTVGEHIGLAFY 235
Query: 260 TIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T GQR+G+ L G PW+V KD+ +N ++V + + + R G++ W++G
Sbjct: 236 TFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAGE 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + +R K R+ C + G E ++V E + GQ A Y G
Sbjct: 296 PPADGARCGAKTRYRQADAPCAFG-RAAQAGDERFSLV-FDEPQWAVTPGQSAVLYDGDV 353
Query: 374 CIGSGVI 380
C+G G+I
Sbjct: 354 CLGGGII 360
>gi|366053388|ref|ZP_09451110.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus suebicus KCTC
3549]
Length = 377
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 203/380 (53%), Gaps = 16/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MTDNSHTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V ++ +P V+ EYW V +Y ++EY+ RTPNPDV+CN IKF AF++
Sbjct: 58 DVAKVASKIGIPYYSVNFEKEYWDRVFTYFLDEYKKDRTPNPDVICNKEIKFKAFLEYAD 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA + Q + L + D+ KDQTYFLS L QL R++FPL
Sbjct: 118 QLGADYIATGHYADLQRDKDGQMH----LMRATDQNKDQTYFLSQLDHEQLDRVMFPLAG 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLG-KIKFSEFVARHIGEMEGVILEAETGDFLG 251
++K EVR+ A L D+KDS GICF+G K F +F++ ++ G ++ + GD +G
Sbjct: 174 LTKPEVRQIAKDAGLATADKKDSVGICFIGEKGHFRDFLSTYLPAKPGKMMTLD-GDVMG 232
Query: 252 KHWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
+H G +YTIGQR+GL + G PW+V+ KD + NV++V + Y++
Sbjct: 233 EHTGLMYYTIGQRKGLGIGGNGTSNDPWFVIGKDQEKNVLYVGQGYHNEHLYATHLNASD 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ W+ + + C + + + + ++++GG+ + V + + + GQ
Sbjct: 293 IHWVDDISAKYGDSFHCTAKFRYRQKDVGVTV-NLDNGGQTV-TVSFDDPARAITPGQAV 350
Query: 367 AFYQGTRCIGSGVILESWDD 386
FY G C+GS +I +++++
Sbjct: 351 VFYDGDECLGSAIIDQAYNE 370
>gi|443643383|ref|ZP_21127233.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas syringae pv. syringae B64]
gi|443283400|gb|ELS42405.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas syringae pv. syringae B64]
Length = 376
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 202/374 (54%), Gaps = 25/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 13 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTEY---CTAREDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF+D + D +
Sbjct: 70 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D + + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR
Sbjct: 130 ATGHYVR----RRDIDGRTELLK-GLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L +KDS GICF+G+ +F++F+ +++ G I E G+ +G+H G ++
Sbjct: 185 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLPAQPGEIKTTE-GEVIGRHSGLMYH 243
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWLSG 312
TIGQRQGL + G PWYV+ KD+ NN + V + N + + R L + W++
Sbjct: 244 TIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVS-SEIYWVNP 302
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ RL KVR+ G C L E DG + + + GQ FY G
Sbjct: 303 IDLSSPRRLTAKVRYRQGDQPCTL--EKAADGYR----ATFDDPQRAVTPGQSVVFYDGE 356
Query: 373 RCIGSGV--ILESW 384
C+G GV I E W
Sbjct: 357 ICLGGGVIEIAEPW 370
>gi|422675179|ref|ZP_16734526.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aceris
str. M302273]
gi|330972900|gb|EGH72966.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aceris
str. M302273]
Length = 366
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 203/374 (54%), Gaps = 25/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTEY---CTAREDLADAQAVCD 59
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF+D + D +
Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D + + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR
Sbjct: 120 ATGHYVR----RRDIDGRTELLK-GLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L +KDS GICF+G+ +F++F+ +++ G I E G+ +G+H G ++
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLPAQPGEIKTTE-GEVIGRHSGLMYH 233
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWLSG 312
TIGQRQGL + G PWYV+ KD++NN + V + N + + R L + W++
Sbjct: 234 TIGQRQGLGIGGLKDASDDPWYVLVKDLENNELIVGQGNDHPWLFSRALVS-SEIYWVNP 292
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ RL KVR+ G C L E DG + + + GQ FY G
Sbjct: 293 IDLSSPRRLTAKVRYRQGDQPCTL--EKTADGYR----ATFDDPQRAVTPGQSVVFYDGE 346
Query: 373 RCIGSGV--ILESW 384
C+G GV I E W
Sbjct: 347 ICLGGGVIEIAEPW 360
>gi|254556990|ref|YP_003063407.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus plantarum JDM1]
gi|308180978|ref|YP_003925106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum ST-III]
gi|380032923|ref|YP_004889914.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum WCFS1]
gi|418275719|ref|ZP_12891042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum NC8]
gi|38258513|sp|Q88V96.1|MNMA_LACPL RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|254045917|gb|ACT62710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum JDM1]
gi|308046469|gb|ADN99012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum ST-III]
gi|342242166|emb|CCC79400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum WCFS1]
gi|376009270|gb|EHS82599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum NC8]
Length = 374
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 132/380 (34%), Positives = 202/380 (53%), Gaps = 17/380 (4%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W D EN C ED K
Sbjct: 1 MTDHSNTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDDTD-EN--GVCTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
V D++ +P ++ EYW V +Y ++EY+ GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAKVADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAM 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
+ DY+A+GHYA++ H D++ +L D KDQTYFLS L L++++FPLG
Sbjct: 118 DLGADYIATGHYARLQH---DEDGTMHLLR-GVDSNKDQTYFLSQLDSKTLQKVMFPLGE 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K +VRK A L +KDS GICF+G+ F EF+ ++ G ++ + G G+
Sbjct: 174 MVKPDVRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLPATPGKMMTFD-GQVKGE 232
Query: 253 HWGFWFYTIGQRQGLRLPGG-----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSL 307
H G +YTIGQR+GL + G PW+VV KD+K N+++V + Y++ + L
Sbjct: 233 HAGLMYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHNPHLYATHLKASDL 292
Query: 308 KWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+++ + K R+ + + + +D E V + + + GQ
Sbjct: 293 HFVTDEDLGNDFHVTAKFRYRQK--DSGVTVHFNDDHTE--VTVTFDDPVRAITPGQAVV 348
Query: 368 FYQGTRCIGSGVILESWDDQ 387
FY G C+GSG+I +++D+
Sbjct: 349 FYNGEECLGSGMIDAAYNDE 368
>gi|438000012|ref|YP_007183745.1| tRNA-specific 2-thiouridylase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451812941|ref|YP_007449394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
gi|429339246|gb|AFZ83668.1| tRNA-specific 2-thiouridylase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451778910|gb|AGF49790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
Length = 380
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 208/388 (53%), Gaps = 33/388 (8%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
LS K V V +SGGVDSSVA +L G+ ++K W ED E+ ++C ++
Sbjct: 9 LSNKESGNKNKLVVVGMSGGVDSSVAAWILKQNGYKVVGLFMKNW--EDHES--SDCTYK 64
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
D+ A +V D++ + E + + EY V S ++EY GRTPNPD+LCN+ IKF F+
Sbjct: 65 NDLIDAASVADKIGIDFEYANFSREYKDKVFSIFLKEYSLGRTPNPDILCNSEIKFRVFL 124
Query: 129 DAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIF 188
D + +Y+A+GHYA++ D +Y L + D KDQ+YFL L+Q QL R IF
Sbjct: 125 DYCLQLGANYIATGHYARI--KKIDSKYH---LLKAVDLKKDQSYFLYRLNQEQLSRSIF 179
Query: 189 PLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD 248
PLGCI K EVR+ A + L N D+KDS GICF+G+ FS F+ + I +G IL + G
Sbjct: 180 PLGCIQKTEVREIAREIGLHNFDKKDSTGICFIGEKFFSGFLEKFIPIKKGAILTLD-GK 238
Query: 249 FLGKHWGFWFYTIGQRQGLRLPG-------------GPWYVVEKDVKNNVVFVSR--NYY 293
+G H G FYT+GQR+GL + G WYV KD+KNN+++V R N+
Sbjct: 239 EIGVHKGVHFYTLGQRKGLGIGGIKDYNPSSNIFENAAWYVARKDLKNNILYVVRGKNHQ 298
Query: 294 SFDKKRRLFRVGSLKWLSGLPPEEISRL-QCKVRHGPGFYNCNLMIEHVEDGGENIAVVQ 352
+ R + ++ W++ L P + + L K R+ C L+ + +N ++
Sbjct: 299 LLNSNR--LQAANIHWINELMPTKKNNLYHAKTRYRQIDSECKLL-----NLNDNEIEIE 351
Query: 353 LSEDDQGLAAGQFAAFYQGTRCIGSGVI 380
E + GQ Y C+G G+I
Sbjct: 352 FKEKQWAITPGQSVVIYDNDICMGGGII 379
>gi|456735855|gb|EMF60581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Stenotrophomonas maltophilia EPM1]
Length = 380
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 193/367 (52%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA L G + +++ W ++ +C E+D + A AVC
Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWA----DDGSGDCRAEDDRRDAVAVCG 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + EYW+ V + + EY GRTPNPDVLCN +KF F+DA + + +
Sbjct: 61 LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V Q +L D+ KDQ+YFL L Q QL +FP+G + K ++R
Sbjct: 121 ATGHYARVT-----QRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLR 175
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A LP +KDS GICF+G+ F EF+ R++ G IL+ G + +H G +++
Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPARPGQILDPADGSVIAEHPGVFYF 235
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+GL + P PWYVV KDV +NV++V ++ S R + W++G
Sbjct: 236 TLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIAGS 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + R+ C + + ++DG +V + + + GQ Y G
Sbjct: 296 PPARRFECTAQTRYRQPDEPCTVQV--LDDGS---VLVTFARPQRAVTPGQSLVLYDGDV 350
Query: 374 CIGSGVI 380
C+G VI
Sbjct: 351 CLGGAVI 357
>gi|146282652|ref|YP_001172805.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri A1501]
gi|166235074|sp|A4VLW2.1|MNMA_PSEU5 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|145570857|gb|ABP79963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas stutzeri A1501]
Length = 375
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 206/368 (55%), Gaps = 23/368 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C +ED+ A+AVCD
Sbjct: 13 RVIVGMSGGVDSSVSALLLLEQGYQVEGLFMKNWEEDDGTEY---CTAKEDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D + D +
Sbjct: 70 RIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D++ + +L+ D KDQ+YFL + QL + +FP+G + K EVR
Sbjct: 130 ATGHYVR----RRDRDGRSELLK-GLDPNKDQSYFLHAVGGEQLAKTLFPVGELEKPEVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L +KDS GICF+G+ +FS+F+ +++ G I EA G+ +G+H G ++
Sbjct: 185 AIAEKHSLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGNI-EAVDGEVIGRHHGLMYH 243
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWLSG 312
TIGQRQGL + G PWYV+ KD++ NV+ V + N + + R L + W++
Sbjct: 244 TIGQRQGLGIGGLKDASDEPWYVLSKDLQRNVLIVGQGNDHPWLFSRALL-ASEIYWVNP 302
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ +L KVR+ C L E DG AV ++ + + + GQ FY G
Sbjct: 303 VDLSAPLKLTAKVRYRQSDQACTL--EQTSDGYR--AVFEVPQ--RAVTPGQSVVFYDGE 356
Query: 373 RCIGSGVI 380
C+G GVI
Sbjct: 357 VCLGGGVI 364
>gi|388565871|ref|ZP_10152351.1| tRNA-specific 2-thiouridylase MnmA [Hydrogenophaga sp. PBC]
gi|388266856|gb|EIK92366.1| tRNA-specific 2-thiouridylase MnmA [Hydrogenophaga sp. PBC]
Length = 383
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/376 (36%), Positives = 199/376 (52%), Gaps = 30/376 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V LSGGVDS+V+ LL GH ++K W +D + C +D A +V D
Sbjct: 6 RVVVGLSGGVDSAVSAYLLKQQGHEVVGIFMKNWEDDDDSEY---CSSRQDWLDAASVAD 62
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + +E V+ EY V + + EY+ GRTPNPD+LCN IKF AF+D + + +
Sbjct: 63 VLGIDIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHAMRLGAEKI 122
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + E L D +KDQ+YFL L+QAQL + +FP+G + K EVR
Sbjct: 123 ATGHYARVRERAGRHE-----LLKGLDPLKDQSYFLHRLTQAQLAKTMFPVGELPKTEVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + LPN +KDS GICF+G+ F EF+ R+I G I + E G +G+H G FY
Sbjct: 178 RIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYIASAPGPIKD-ERGRTIGEHVGLSFY 236
Query: 260 TIGQRQGLRLPG-------------GPWYVVEKDVKNNVVFVSRNY-YSFDKKRRLFRVG 305
T+GQRQGL + G PW+V KD+ N ++ + + + + RL R
Sbjct: 237 TLGQRQGLGIGGVRAKGAQKGGSEHEPWFVARKDIARNTLWAVQGHDHPWLLSPRL-RAH 295
Query: 306 SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQF 365
W++G PP L K R+ C +E G++ V++ + + GQ
Sbjct: 296 DASWVAGEPP-RAGALAAKTRYRQADAPCA-----IEPLGDDGFVLRFEQAQWAVTPGQS 349
Query: 366 AAFYQGTRCIGSGVIL 381
A Y G C+G GVI+
Sbjct: 350 AVLYDGEVCLGGGVIV 365
>gi|190574280|ref|YP_001972125.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia
K279a]
gi|205828975|sp|B2FQX2.1|MNMA_STRMK RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|190012202|emb|CAQ45825.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Stenotrophomonas maltophilia K279a]
Length = 380
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 193/367 (52%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA L G + +++ W ++ +C E+D + A AVC
Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWA----DDGSGDCRAEDDRRDAVAVCG 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + EYW+ V + + EY GRTPNPDVLCN +KF F+DA + + +
Sbjct: 61 LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V Q +L D+ KDQ+YFL L Q QL +FP+G + K ++R
Sbjct: 121 ATGHYARVT-----QRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLR 175
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A LP +KDS GICF+G+ F EF+ R++ G IL+ G + +H G +++
Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAEHPGVFYF 235
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+GL + P PWYVV KDV +NV++V ++ S R + W++G
Sbjct: 236 TLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIAGS 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + R+ C + + ++DG +V + + + GQ Y G
Sbjct: 296 PPARRFECTAQTRYRQPDEPCTVQV--LDDGS---VLVTFARPQRAVTPGQSLVLYDGDV 350
Query: 374 CIGSGVI 380
C+G VI
Sbjct: 351 CLGGAVI 357
>gi|149376379|ref|ZP_01894142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter algicola DG893]
gi|149359393|gb|EDM47854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter algicola DG893]
Length = 386
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/373 (34%), Positives = 195/373 (52%), Gaps = 18/373 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W ++D + C D+ A+AV +
Sbjct: 9 RVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTEY---CTAMTDLADARAVAE 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + L EYW V + + EY+ GRTPNPD+LCN +KF AF+D ++ DY+
Sbjct: 66 TIGITLHTASFAAEYWDRVFEHFLSEYKAGRTPNPDILCNKEVKFRAFLDYAITLGADYI 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D + L D KDQ+YFL +S ++ R +FP+G + K EVR
Sbjct: 126 ATGHYTR--QRPLDDGSGGAELLKGLDPNKDQSYFLHAVSGERIARTLFPVGELEKPEVR 183
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + D+KDS GICF+G+ KF +F+ ++I G I E G +G+H G ++
Sbjct: 184 RIAAEQGFITHDKKDSTGICFIGERKFRDFLKQYIPAQPGNI-ETPDGQVIGRHQGLMYH 242
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G PWYV EKD+ NV+ + + R G + W++G
Sbjct: 243 TIGQRQGLGIGGLSEFGDEPWYVAEKDLSRNVLVAVQGKHHPLLFSRGLISGPVDWIAGE 302
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P R + K R+ +C + + G VV + + + GQ FY+
Sbjct: 303 APAAEFRCKAKTRYRQPDQDCTVTVL-----GNGFRVV-FDDAQRAVTPGQSVVFYRDEV 356
Query: 374 CIGSGVILESWDD 386
C+G GVI ++W D
Sbjct: 357 CLGGGVIEQTWRD 369
>gi|344207386|ref|YP_004792527.1| tRNA-specific 2-thiouridylase mnmA [Stenotrophomonas maltophilia
JV3]
gi|343778748|gb|AEM51301.1| tRNA-specific 2-thiouridylase mnmA [Stenotrophomonas maltophilia
JV3]
Length = 380
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 193/367 (52%), Gaps = 20/367 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA L G + +++ W ++ +C E+D + A AVC
Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWA----DDGSGDCRAEDDRRDAVAVCG 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + EYW+ V + + EY GRTPNPDVLCN +KF F+DA + + +
Sbjct: 61 LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V Q +L D+ KDQ+YFL L Q QL +FP+G + K ++R
Sbjct: 121 ATGHYARVT-----QRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKSDLR 175
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A LP +KDS GICF+G+ F EF+ R++ G IL+ G + +H G +++
Sbjct: 176 RIARDVGLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAEHPGVFYF 235
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
T+GQR+GL + P PWYVV KDV +NV++V ++ S R + W++G
Sbjct: 236 TLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSQWMLSERLRSETAHWIAGS 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + R+ C +E ++DG +V + + + GQ Y G
Sbjct: 296 PPARRFECTAQTRYRQPDEPCT--VEVLDDGS---VLVTFARPQRAVTPGQSLVLYDGDV 350
Query: 374 CIGSGVI 380
C+G VI
Sbjct: 351 CLGGAVI 357
>gi|403379215|ref|ZP_10921272.1| tRNA-specific 2-thiouridylase MnmA [Paenibacillus sp. JC66]
Length = 377
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 199/365 (54%), Gaps = 19/365 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V + +SGGVDSSVA LL G+ ++K W +D + F C EED + + VC
Sbjct: 9 RVVLGMSGGVDSSVAALLLKEQGYEVIGIFMKNW--DDTDEFG-HCSAEEDAEDVRRVCS 65
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P V+ Y+ V +Y ++EYR GRTPNPDV+CN IKFG FM + DY+
Sbjct: 66 HIGIPYYTVNFEKAYYDKVFAYFLDEYRRGRTPNPDVMCNREIKFGDFMRKAMELGADYI 125
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + D Y+ L D KDQTYFL+ L+Q+QL + +FP+G + K EVR
Sbjct: 126 ATGHYAQV--AERDGSYR---LLRGVDSNKDQTYFLNALNQSQLSKTMFPIGHLPKPEVR 180
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + LP +KDS G+CF+G+ F EF++ ++ G + + G+ G+H G +Y
Sbjct: 181 AIAEKAGLPTARKKDSTGVCFIGERDFKEFLSHYLPAQPGEMRTLD-GELKGRHDGLMYY 239
Query: 260 TIGQRQGLRLPGG----PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPP 315
T+GQRQGL + G PW+V KD++NN+++V + + L G + W+SG P
Sbjct: 240 TLGQRQGLGIGGSGTGEPWFVAGKDLRNNILYVVQGDHPSLYSTSLMATG-VNWISGQSP 298
Query: 316 EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCI 375
K R + + + E + + V + + + + GQ FYQG CI
Sbjct: 299 GRTLHCTAKFR----YRQPDQEVTVTELAADKVR-VDFAREQRAITPGQAVVFYQGEECI 353
Query: 376 GSGVI 380
G G I
Sbjct: 354 GGGTI 358
>gi|167034615|ref|YP_001669846.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida GB-1]
gi|189040506|sp|B0KMQ6.1|MNMA_PSEPG RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|166861103|gb|ABY99510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas putida GB-1]
Length = 374
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 200/370 (54%), Gaps = 27/370 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 13 RVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTEY---CTAREDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF+D S+ D +
Sbjct: 70 RIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHY + + + EL K D KDQ+YFL + ++ R +FP+G + K E
Sbjct: 130 ATGHYVRRRDTG-------DLTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGELEKPE 182
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR A + L +KDS GICF+G+ +FS+F+ +++ G I E G+ +G+H G
Sbjct: 183 VRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLPAQPGDI-ETTEGEVIGRHHGLM 241
Query: 258 FYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWL 310
++TIGQRQGL + G PWYV+ KD+ NV+ V + N + + R L + W+
Sbjct: 242 YHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVGQGNEHPWLFSRALL-ASEIFWV 300
Query: 311 SGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
+ + +L KVR+ C L E E G + E + + GQ FY
Sbjct: 301 NPIDLSSPRQLTAKVRYRQSDQQCTL--ELTETGYRAV----FDEPQRAVTPGQSVVFYD 354
Query: 371 GTRCIGSGVI 380
G C+G GVI
Sbjct: 355 GEVCLGGGVI 364
>gi|424863183|ref|ZP_18287096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [SAR86
cluster bacterium SAR86A]
gi|400757804|gb|EJP72015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [SAR86
cluster bacterium SAR86A]
Length = 367
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 202/373 (54%), Gaps = 28/373 (7%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V V +SGGVDSSV+ LL G+ +++ W E E C E D K A VCD+
Sbjct: 14 VVVGMSGGVDSSVSAYLLKKDGYDVIGLFMQNWQSEPGE----VCTSEIDFKDASLVCDK 69
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+D+PL + + EYW NV + E++ GRTPNPD+LCN IKF +F+ ++ DY+A
Sbjct: 70 LDIPLHRANFSQEYWDNVFEEFLSEHKNGRTPNPDILCNREIKFKSFLKYAFTIGADYIA 129
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYA + S E P +L +KD KDQTYFL + ++ ++ IFPL + K+EVRK
Sbjct: 130 TGHYASIKMS----EIGP-MLCRAKDLKKDQTYFLHEVRSSEFEKCIFPLSNLYKDEVRK 184
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A DL ++KDS GICF+G+ +F+ R I +G IL+ E G+ +G H G +T
Sbjct: 185 IAKDIDLSVSNKKDSVGICFIGERNLKDFLGRFIDLEKGKILD-EFGNNIGTHNGATLFT 243
Query: 261 IGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR---NYYSFDKKRRLFRVGSLKWLS 311
GQRQGL + G PWYV +KD+ N V V + N FD ++ ++ W++
Sbjct: 244 KGQRQGLNIGGIKNKQDLPWYVFDKDINKNEVHVCQGVDNELLFDSGLKMKKIN---WIN 300
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
E +VRH C ++ E N ++ E + +A+GQ A FY
Sbjct: 301 EFNFEYPKTALLQVRHQHKPVKCTIVKE------SNKYNIKFEEKIRAVASGQSAVFYDN 354
Query: 372 TRCIGSGVILESW 384
C+G G+I E++
Sbjct: 355 NVCLGGGIITETY 367
>gi|421502116|ref|ZP_15949071.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina DLHK]
gi|400346963|gb|EJO95318.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina DLHK]
Length = 358
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 23/363 (6%)
Query: 25 LSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP 84
+SGGVDSSV+ LL G+ ++K W ++D + C +D+ A+AVCD++ +
Sbjct: 1 MSGGVDSSVSALLLMEQGYQVEGLFMKNWDEDDGTEY---CTAMDDLADAQAVCDRIGIK 57
Query: 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144
L + EYW NV + + EY+ GRTPNPD+LCN IKF AF+D S+ D +A+GHY
Sbjct: 58 LHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLIATGHY 117
Query: 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQ 204
+ D E + +L+ D KDQ+YFL + Q+ + +FP+G + K +VR A +
Sbjct: 118 VR----RRDIEGRTELLK-GLDPNKDQSYFLHAVGGEQIAKTLFPVGELEKPQVRAIAEK 172
Query: 205 FDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYTIGQR 264
++L +KDS GICF+G+ +FS+F+ +++ G I E G +G+H G ++TIGQR
Sbjct: 173 YELATAKKKDSTGICFIGERRFSDFLKQYLPAQPGDI-ETTEGQVIGRHHGLMYHTIGQR 231
Query: 265 QGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWLSGLPPEE 317
QGL + G PWYV+ KD+ NV+ V + N + + R L ++ W++ +
Sbjct: 232 QGLGIGGLKDASDDPWYVLRKDLTRNVLIVGQGNEHPWLFSRALL-ASNIYWVNPVDLST 290
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
RL KVR+ C L E E+G + E + + GQ FY G C+G
Sbjct: 291 PRRLTAKVRYRQSDQACTL--EKTENGYRAV----FDEPQRAVTPGQSVVFYDGEVCLGG 344
Query: 378 GVI 380
GVI
Sbjct: 345 GVI 347
>gi|386741699|ref|YP_006214878.1| tRNA-specific 2-thiouridylase MnmA [Providencia stuartii MRSN 2154]
gi|384478392|gb|AFH92187.1| tRNA-specific 2-thiouridylase MnmA [Providencia stuartii MRSN 2154]
Length = 367
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 205/375 (54%), Gaps = 35/375 (9%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C D+ A++VCD
Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNWEEDDDEEY---CSAATDLADAQSVCD 64
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF++ A + DY
Sbjct: 65 KLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHY + D K +L D KDQ+YFL LS AQ+ + +FP+G + K EV
Sbjct: 125 IATGHYVR----RHDVNGKSQLLR-GLDNNKDQSYFLYTLSYAQIAKSLFPVGELEKPEV 179
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF +F+ R++ G I+ + G+ +G+H G +
Sbjct: 180 RRIAEEVGLVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIVTVD-GETIGQHEGLMY 238
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+KDV+NN + V++ + + RL G L
Sbjct: 239 HTLGQRKGLGIGGMKEGSDEPWYVVDKDVENNRLIVAQGH----EHPRLMSTGLIAQQLD 294
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA---GQF 365
W+ P + R K R+ C + + DG + D +AA GQ
Sbjct: 295 WVDREPLTQTLRCAVKTRYRQADIPCT--VTPLNDGKVEVIF------DYPVAAVTPGQS 346
Query: 366 AAFYQGTRCIGSGVI 380
A FY C+G G+I
Sbjct: 347 AVFYLDEVCLGGGII 361
>gi|410446542|ref|ZP_11300645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [SAR86
cluster bacterium SAR86E]
gi|409980214|gb|EKO36965.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [SAR86
cluster bacterium SAR86E]
Length = 363
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 135/372 (36%), Positives = 200/372 (53%), Gaps = 22/372 (5%)
Query: 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80
V V +SGGVDSSVA LL G+ +++ W E E C E D A VCDQ
Sbjct: 8 VVVGMSGGVDSSVAAYLLQKQGYKVQGLFMQNWQNEPGE----VCTSEIDFNDASKVCDQ 63
Query: 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVA 140
+++PL + +DEYW V + E+ GRTPNPD+LCN IKF +F+D + D++A
Sbjct: 64 LNIPLHKANFSDEYWDRVFKEFLSEHEKGRTPNPDILCNREIKFKSFLDYAIKIGADHIA 123
Query: 141 SGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRK 200
+GHYAK+ H + SVL SKD KDQTYFL ++ + + IFPL ++K EVR+
Sbjct: 124 TGHYAKIEH-----QKDKSVLMRSKDINKDQTYFLHEVTGKEFAKCIFPLENLNKNEVRE 178
Query: 201 FATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFYT 260
A + N D+KDS GICF+G+ +F+ R I G I +++ G+ +G H G +T
Sbjct: 179 IAENNNFINYDKKDSVGICFVGERNLKDFLKRFIKFESGDIKDSD-GNIVGTHPGALLFT 237
Query: 261 IGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP 314
GQRQGL + P PWYV +K ++ N V+V + ++ + +KW++
Sbjct: 238 QGQRQGLNVGGVKDKPELPWYVYDKSIELNEVYVCQGEFNNFLMSDGLLMEEMKWINETI 297
Query: 315 PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRC 374
P + + +VRH C+ H D G ++ SE + +A GQ A Y+ C
Sbjct: 298 PPKKLECEVQVRHRGKPVKCD---AHFMDQG---VKLKFSEQIRAIAPGQSAVLYKDNEC 351
Query: 375 IGSGVILESWDD 386
+G G+I ++ D
Sbjct: 352 LGGGIIAKALKD 363
>gi|422630828|ref|ZP_16696022.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330940375|gb|EGH43479.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 366
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 202/374 (54%), Gaps = 25/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTEY---CTAREDLADAQAVCD 59
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF+D + D +
Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D + + +L+ D KDQ+YFL + Q+ R +FP+G + K EVR
Sbjct: 120 ATGHYVR----RRDIDGRTELLK-GLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L +KDS GICF+G+ +F++F+ +++ G I E G+ +G+H G ++
Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLPAQPGEIKTTE-GEVIGRHSGLMYH 233
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWLSG 312
TIGQRQGL + G PWYV+ KD+ NN + V + N + + R L + W++
Sbjct: 234 TIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVS-SEIYWVNP 292
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ RL KVR+ G C L E DG + + + GQ FY G
Sbjct: 293 IDLSSPPRLTAKVRYRQGDQPCTL--EKTADGYR----ATFDDPQRAVTPGQSVVFYDGE 346
Query: 373 RCIGSGV--ILESW 384
C+G GV I E W
Sbjct: 347 ICLGGGVIEIAEPW 360
>gi|422882991|ref|ZP_16929440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK49]
gi|332364140|gb|EGJ41917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK49]
Length = 373
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 135/378 (35%), Positives = 196/378 (51%), Gaps = 20/378 (5%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +V V +SGGVDSSV LL G+ ++K W +D + F C ED K
Sbjct: 1 MSDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNW--DDTDEFGV-CTATEDYK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 132
AV DQ+ +P V+ EYW+ V Y + EYR GRTPNPDV+CN IKF AF+D
Sbjct: 58 DVAAVADQIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAL 117
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DYVA+GHYA+V DQE +L KD KDQTYFLS LSQ QL++ +FPLG
Sbjct: 118 TLGADYVATGHYAQV---KRDQEGVVHMLR-GKDNNKDQTYFLSQLSQEQLQKTMFPLGH 173
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR A + L +KDS GICF+G+ F EF+++++ G ++ E D +G+
Sbjct: 174 LEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRD-MGQ 232
Query: 253 HWGFWFYT------IGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G +YT +G PW+VV KD+ N+++V + +Y +
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
+ + +P E K R+ + ++ + AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTIECTAKFRYRQPDSKVTVTVKG------DKAVVNFDQPQRAVTPGQAV 346
Query: 367 AFYQGTRCIGSGVILESW 384
FY G C+G G+I ++
Sbjct: 347 VFYDGDECLGGGLIDRAY 364
>gi|298157925|gb|EFH99003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
Length = 376
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 199/374 (53%), Gaps = 25/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSV+ LL G+ ++K W ++D + C ED+ A+AVCD
Sbjct: 13 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTEY---CTAREDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
++ + L + EYW NV + +EEY+ GRTPNPD+LCN IKF AF+D + D +
Sbjct: 70 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 129
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + + E + D KDQ+YFL + Q+ R +FP+G + K EVR
Sbjct: 130 ATGHYVRRRDTDGRTELLKGL-----DPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 184
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
A + L +KDS GICF+G+ +F++F+ +++ G I E G+ +G+H G ++
Sbjct: 185 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLPAQPGEIKTTE-GEVIGRHSGLMYH 243
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSR-NYYSFDKKRRLFRVGSLKWLSG 312
TIGQRQGL + G PWYV+ KD+ NN + V + N + + R L + W++
Sbjct: 244 TIGQRQGLGIGGLKDASDDPWYVLIKDLDNNELIVGQGNDHPWLFSRALVST-EIYWVNP 302
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
+ +L KVR+ G C L E DG + + + GQ FY G
Sbjct: 303 IDLSSPRKLTAKVRYRQGDQPCTL--EKTADGYR----ATFDDPQRAVTPGQSVVFYDGE 356
Query: 373 RCIGSGV--ILESW 384
C+G GV I E W
Sbjct: 357 ICLGGGVIEIAEPW 370
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,767,868,519
Number of Sequences: 23463169
Number of extensions: 334222065
Number of successful extensions: 787563
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4489
Number of HSP's successfully gapped in prelim test: 376
Number of HSP's that attempted gapping in prelim test: 762806
Number of HSP's gapped (non-prelim): 5274
length of query: 474
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 328
effective length of database: 8,933,572,693
effective search space: 2930211843304
effective search space used: 2930211843304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)