BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042717
(474 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O51625|MNMA_BORBU tRNA-specific 2-thiouridylase MnmA OS=Borrelia burgdorferi (strain
ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=mnmA PE=3
SV=1
Length = 355
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQIKES-----KFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>sp|B7J2N7|MNMA_BORBZ tRNA-specific 2-thiouridylase MnmA OS=Borrelia burgdorferi (strain
ZS7) GN=mnmA PE=3 SV=1
Length = 355
Score = 363 bits (933), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ + +YLKIW +++ ++ CPW+ED+ Y +A+
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDEL-SYIGNCPWQEDLNYVEAI 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ +VP E+++ EY+ VVSY IEE + G TP+PD+ CN RIKFGAF + I+S ++D
Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINS-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + +L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKIQIKES-----KFLLKQAKDKIKDQSYFLSHLSQKQISKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++ P
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND-TPTN 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ DQG++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>sp|Q0SMH1|MNMA_BORAP tRNA-specific 2-thiouridylase MnmA OS=Borrelia afzelii (strain PKo)
GN=mnmA PE=3 SV=1
Length = 355
Score = 363 bits (932), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 253/365 (69%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL R+++ S +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYTSIKCYYLKIWLEDEL-SYIGSCPWQEDLNYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E+++ EY+ VVSY I+E + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CSKFNVPYEIINFQKEYYNKVVSYTIKELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYAK+ + D+++ L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYAKI--QTKDKKF---FLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNK+RKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++G P +
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWING-TPSD 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + +N+ + L++ D G++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLKLI-----AKNLIEISLNKKDYGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>sp|Q660I8|MNMA_BORGA tRNA-specific 2-thiouridylase MnmA OS=Borrelia garinii (strain PBi)
GN=mnmA PE=3 SV=1
Length = 355
Score = 358 bits (918), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 165/365 (45%), Positives = 250/365 (68%), Gaps = 14/365 (3%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSS+AL + + G++ +YLKIW +++ ++ CPW+ED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSIALYKVINKGYTNIKCYYLKIWLEDEL-SYIGNCPWQEDLNYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C++ ++P E+++ EY+ VV Y IEE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CNKFNIPYEIINFQKEYYNKVVIYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
V +GHYA++ + K L+ +KDK+KDQ+YFLSHLSQ Q+ +L FPLG + K E
Sbjct: 119 LVVTGHYARI-----QIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLYFPLGTLFKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A +LPNKDRKDSQGICFLGKIK++EF+ H+GE +G I+E ETG +G H G+W
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIVEKETGKIIGIHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+T+GQR+G++L GPW+V+EKD++ N++++S N + +R F V + W++G+P +
Sbjct: 234 FFTVGQRRGIKLSNGPWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINGMPS-D 292
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ K+RHG Y+C L + N+ + L++ D G++ GQFA FY+ T C+G
Sbjct: 293 FENFKIKIRHGEKKYSCKLRLI-----TNNLIEIFLNKKDHGISPGQFAIFYKNTECLGG 347
Query: 378 GVILE 382
I +
Sbjct: 348 AKIFK 352
>sp|B2S125|MNMA_BORHD tRNA-specific 2-thiouridylase MnmA OS=Borrelia hermsii (strain DAH)
GN=mnmA PE=3 SV=2
Length = 354
Score = 357 bits (917), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 173/366 (47%), Positives = 246/366 (67%), Gaps = 15/366 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+AVLLSGGVDSSVAL + G+ + +YLKIW +++ ++ ECPWEED+ Y +AV
Sbjct: 1 MKIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDEL-SYIGECPWEEDINYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E++ L DEY+K VV+Y IEE + G TP+PD+ CN RIKFGAF D I+ +D
Sbjct: 60 CTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINE-HYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+ +GHYAK+ + + Y +L+ +KDK+KDQ+YFLSHLS+ Q+ +L FPLG + K E
Sbjct: 119 LIVTGHYAKI--ENKNNHY---ILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
+R+ A + DLPNK+RKDSQGICFLGKIK+ EF+ H+GE++G I+E ETG LG H G+W
Sbjct: 174 IRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+TIGQR+G++L GPW+V EKD++NN++++S + + + F V W++ P
Sbjct: 234 FFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWIN--KPVN 291
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
L K+RHG C +E +I V L E D G++ GQF FYQ C+G
Sbjct: 292 NIDLSAKIRHGEKKIKCK-----IEMLKNDIIKVDLEEKDYGISPGQFCIFYQEDECLGG 346
Query: 378 GVILES 383
IL++
Sbjct: 347 AQILQT 352
>sp|A1R0A7|MNMA_BORT9 tRNA-specific 2-thiouridylase MnmA OS=Borrelia turicatae (strain
91E135) GN=mnmA PE=3 SV=1
Length = 354
Score = 357 bits (915), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 171/366 (46%), Positives = 248/366 (67%), Gaps = 15/366 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+++AVLLSGGVDSSVAL ++ G+ + +YLKIW +++ ++ ECPW+ED+ Y +AV
Sbjct: 1 MQIAVLLSGGVDSSVALYIMIQKGYKNIKCYYLKIWLEDEL-SYIGECPWKEDINYVEAV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E++ L DEY+K VV+Y IEE + G TP+PD+ CN RIKFGAF D I+ +D
Sbjct: 60 CKKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINE-HYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+ +GHYAK+ + + Y +L+ +KDK+KDQ+YFLSHLS+ Q+ +L FPLG + K E
Sbjct: 119 LIVTGHYAKI--ENKNDHY---ILKQAKDKIKDQSYFLSHLSRKQISKLHFPLGDLLKTE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
+R+ A + DLPNK+RKDSQGICFLGKIK+ EF+ H+GE++G I+E ETG LG H G+W
Sbjct: 174 IRQIAQKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+TIGQR+G++L GPW+V EKD++NN++++S + + ++ F V W++ P
Sbjct: 234 FFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSINYLKQGKQQFLVHKTNWIN--KPLN 291
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
L K+RHG C +E +I V L E D G++ GQF FYQ C+G
Sbjct: 292 NGDLSAKIRHGEKKIKCK-----IEMLKNDIIKVDLEEKDYGISPGQFCIFYQEDECLGG 346
Query: 378 GVILES 383
IL++
Sbjct: 347 AKILKT 352
>sp|B5RMM8|MNMA_BORDL tRNA-specific 2-thiouridylase MnmA OS=Borrelia duttonii (strain Ly)
GN=mnmA PE=3 SV=1
Length = 354
Score = 350 bits (898), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 167/366 (45%), Positives = 248/366 (67%), Gaps = 15/366 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+A+LLSGGVDSSVAL + G+ + +YLKIW +++ ++ ECPW+ED+ Y +V
Sbjct: 1 MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDEL-SYIGECPWKEDITYVDSV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP E+++L +EY+ VV+Y IEE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CKKFNVPYEIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+ +GHYAK+ + + L+ +KDK+KDQ+YFLSHLS+ Q+ +L FPLG + K E
Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
+R+ A + DLPNK+RKDSQGICFLGKIK++EF+ H+GE++G I+E ETG LG H G+W
Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+TIGQR+G++L GPW+V EKD++NN++++S + + + F V W++ P +
Sbjct: 234 FFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWIN--KPLK 291
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
L K+RHG C IE ++D I V L E D G++ GQF FY+ C+G
Sbjct: 292 NDNLSAKIRHGEKKIKCK--IETLKD---EIIRVNLEEKDYGISPGQFCIFYKEDECLGG 346
Query: 378 GVILES 383
IL++
Sbjct: 347 AKILKT 352
>sp|B5RQ24|MNMA_BORRA tRNA-specific 2-thiouridylase MnmA OS=Borrelia recurrentis (strain
A1) GN=mnmA PE=3 SV=1
Length = 354
Score = 350 bits (897), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 166/366 (45%), Positives = 249/366 (68%), Gaps = 15/366 (4%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAV 77
+K+A+LLSGGVDSSVAL + G+ + +YLKIW +++ ++ ECPW+ED+ Y +V
Sbjct: 1 MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDEL-SYIGECPWKEDITYVDSV 59
Query: 78 CDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFD 137
C + +VP ++++L +EY+ VV+Y IEE + G TP+PD+ CN RIKFGAF + I+ ++D
Sbjct: 60 CKKFNVPYKIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118
Query: 138 YVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
+ +GHYAK+ + + L+ +KDK+KDQ+YFLSHLS+ Q+ +L FPLG + K E
Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
+R+ A + DLPNK+RKDSQGICFLGKIK++EF+ H+GE++G I+E ETG LG H G+W
Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYW 233
Query: 258 FYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEE 317
F+TIGQR+G++L GPW+V EKD++NN++++S + + + F V W++ P +
Sbjct: 234 FFTIGQRKGIKLSHGPWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWIN--KPLK 291
Query: 318 ISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGS 377
+ L K+RHG C IE ++D I V L E D G++ GQF FY+ C+G
Sbjct: 292 NNNLSAKIRHGEKKIKCK--IETLKD---EIIRVNLEEKDYGISPGQFCIFYKEDECLGG 346
Query: 378 GVILES 383
IL++
Sbjct: 347 AKILKT 352
>sp|Q5LFN5|MNMA2_BACFN tRNA-specific 2-thiouridylase MnmA 2 OS=Bacteroides fragilis
(strain ATCC 25285 / NCTC 9343) GN=mnmA2 PE=3 SV=1
Length = 353
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/367 (43%), Positives = 222/367 (60%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y IE+ R G+TPNPDV+CN IKFG F + +FD
Sbjct: 58 RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCFEQQVGK-DFDL 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD +KDQT FL+ + Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A Q LP+ RKDSQGICFLGKI +++FV R +GE EG ++E ETG +G H G+WF
Sbjct: 172 REIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV+KD+++N+++VS Y + + FR+ +++ P E
Sbjct: 232 HTIGQRKGLGLGGGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F L+ H E+G I+ SE QG+A GQF Y
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLL--HDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRV 345
Query: 374 CIGSGVI 380
C GSG I
Sbjct: 346 CFGSGEI 352
>sp|Q8ABF5|MNMA1_BACTN tRNA-specific 2-thiouridylase MnmA 1 OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=mnmA1 PE=3 SV=1
Length = 355
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 225/367 (61%), Gaps = 19/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 1 MNIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIEMSTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW+NV +Y I++ + G TPNPDV+CN IKFG F + FD+
Sbjct: 58 RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFGCFEQQVGK-NFDF 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD VKDQT FL+ + Q+ +L+FP+G + K+EV
Sbjct: 117 TATGHYATTIRQDG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A++ LP+ RKDSQGICFLGKI +++FV R +GE EG I+E ETG +G H G+WF
Sbjct: 172 REIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEREGAIIELETGKKVGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KDV+ N+++VS Y + FR+ +++ P ++
Sbjct: 232 HTIGQRKGLGLSGGPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENPWKDA 291
Query: 319 SR---LQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFY--QGTR 373
+ + K+RH P F L+ E+GG+ + SE QG+A GQF Y +
Sbjct: 292 GKEIDITFKIRHTPEFTKGKLV---QEEGGQ--FRILSSEKLQGIAPGQFGVIYDEEAGI 346
Query: 374 CIGSGVI 380
C+GSG I
Sbjct: 347 CVGSGEI 353
>sp|Q64WG8|MNMA2_BACFR tRNA-specific 2-thiouridylase MnmA 2 OS=Bacteroides fragilis
(strain YCH46) GN=mnmA2 PE=3 SV=1
Length = 353
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 157/367 (42%), Positives = 222/367 (60%), Gaps = 20/367 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A LLSGGVDSSV + LL G+ T FY+KI + +C EED++ + A+
Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDG---AEYMDCSAEEDIELSTAIA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + LEVV L EYW NV +Y IE+ R G+TPNPDV+CN IKFG F + +FD
Sbjct: 58 RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFGCFEQQVGK-DFDL 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA + + L +KD +KDQT FL+ + Q+ +L+FP+G + K EV
Sbjct: 117 TATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + LP+ RKDSQGICFLGKI +++FV R +GE EG ++E ETG +G H G+WF
Sbjct: 172 REIALRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+VV+KD+++N+++VS Y + + FR+ +++ P E
Sbjct: 232 HTIGQRKGLGLGGGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 319 S---RLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ + K+RH P F L+ H E+G I+ SE QG+A GQF Y
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLL--HDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRV 345
Query: 374 CIGSGVI 380
C GSG I
Sbjct: 346 CFGSGEI 352
>sp|A6LIF1|MNMA_PARD8 tRNA-specific 2-thiouridylase MnmA OS=Parabacteroides distasonis
(strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=mnmA PE=3
SV=1
Length = 358
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/369 (40%), Positives = 224/369 (60%), Gaps = 19/369 (5%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+++A L+SGGVDSSV + L AG+ T FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMED--KDGYIDCPAEEDIEITSYIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ E+V L DEYW VVSY IE + G TPNPD++CN IKFG F + +FD
Sbjct: 59 RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFGCFEEKWGK-DFDK 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA + L +KD VKDQT FL +++ Q+++L+FP+G + K EV
Sbjct: 118 IATGHYATTTEIDG-----KTWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R++G+ G I+E ETG LGKH G+WF
Sbjct: 173 RAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRPGKIVELETGKVLGKHNGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEI 318
+TIGQR+GL L GGPW+V++KD+K N+++VS Y + ++ + +++ P E
Sbjct: 233 HTIGQRKGLGLSGGPWFVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITEDPWGEF 292
Query: 319 ---SRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR-- 373
+ K+RH P F + I + D + V+ E QG+A GQ++ Y
Sbjct: 293 EGEKEITFKIRHTPEF--THGYIRRIGD----LYRVESDEKIQGIAPGQYSVIYDKDHHL 346
Query: 374 CIGSGVILE 382
C+GSG+I++
Sbjct: 347 CLGSGMIID 355
>sp|B2RHP0|MNMA_PORG3 tRNA-specific 2-thiouridylase MnmA OS=Porphyromonas gingivalis
(strain ATCC 33277 / DSM 20709 / JCM 12257) GN=mnmA PE=3
SV=1
Length = 361
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 220/371 (59%), Gaps = 23/371 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ VA L+SGGVDSSV + L G+ FY++I ++ E+ + +CP EED++ +
Sbjct: 1 MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRIGMED--EDGYIDCPAEEDIELTTLIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ P EVV L EYW+ VVSY +E R G TPNPD++CN IKFG F + +FD
Sbjct: 59 RRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFGCFEERWG-YQFDR 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA + D + L +KD VKDQT FL+ ++ AQ+ +L+FP+G + K EV
Sbjct: 118 IATGHYA-----TTDLLNGKTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R++G+ EG I+E ETG +G+H G+WF
Sbjct: 173 RAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGKKEGRIIELETGKVIGRHQGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---- 314
+TIGQR+GL L GGPW+VV+KD+K N++ VSR Y + + + + +++
Sbjct: 233 HTIGQRKGLGLSGGPWFVVKKDIKRNIILVSRGYDPDTQYGKTIEMETFDFITEDAYEAG 292
Query: 315 ---PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
E+ + + K+RH P F L GE ++ E QG+A GQ+ Y
Sbjct: 293 YWNREDATPVTFKIRHTPEFTRGLLY------KGEKGYRLESEERIQGIAPGQYCVIYDE 346
Query: 372 TR--CIGSGVI 380
C GSG+I
Sbjct: 347 DHHLCYGSGMI 357
>sp|Q7MAW9|MNMA_PORGI tRNA-specific 2-thiouridylase MnmA OS=Porphyromonas gingivalis
(strain ATCC BAA-308 / W83) GN=mnmA PE=3 SV=1
Length = 361
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 220/371 (59%), Gaps = 23/371 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ VA L+SGGVDSSV + L G+ FY++I ++ ++ + +CP EED++ +
Sbjct: 1 MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRIGMED--KDGYIDCPAEEDIELTTLIA 58
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ P EVV L EYW+ VVSY +E R G TPNPD++CN IKFG F + +FD
Sbjct: 59 RRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFGCFEERWG-YQFDR 117
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A+GHYA + D + L +KD VKDQT FL+ ++ AQ+ +L+FP+G + K EV
Sbjct: 118 IATGHYA-----TTDLLNGKTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEV 172
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI +++F+ R++G+ EG I+E ETG +G+H G+WF
Sbjct: 173 RAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGKKEGRIIELETGKVIGRHQGYWF 232
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLP---- 314
+TIGQR+GL L GGPW+VV+KD+K N++ VSR Y + + + + +++
Sbjct: 233 HTIGQRKGLGLSGGPWFVVKKDIKRNIILVSRGYDPDAQYGKTIEMETFDFITEDAYEAG 292
Query: 315 ---PEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
E+ + + K+RH P F L GE ++ E QG+A GQ+ Y
Sbjct: 293 YWNREDATPVTFKIRHTPEFTRGLLY------KGEKGYRLESEERIQGIAPGQYCVIYDE 346
Query: 372 TR--CIGSGVI 380
C GSG+I
Sbjct: 347 DHHLCYGSGMI 357
>sp|A6KXF7|MNMA1_BACV8 tRNA-specific 2-thiouridylase MnmA 1 OS=Bacteroides vulgatus
(strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=mnmA1 PE=3
SV=1
Length = 354
Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 206/372 (55%), Gaps = 25/372 (6%)
Query: 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78
+ +A L+SGGVDS+V + LL G+ FY+KI D + C EED++ A
Sbjct: 1 MNIAALISGGVDSAVVVHLLCEQGYKPDLFYIKIGMDGDED---LTCTAEEDIELCTATA 57
Query: 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDY 138
+ + L ++ L +YW NVV+Y I++ + G TPNPDV+CN IKFG F + +D
Sbjct: 58 RKYGLSLNIIDLHRQYWDNVVAYAIDKVKRGLTPNPDVMCNKLIKFGCFEQEAGHL-YDK 116
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYA ++ L ++D VKDQT FL+ + Q+ +L+FPLG + K EV
Sbjct: 117 TATGHYASILEKDG-----KIWLGTAQDPVKDQTDFLAQIDYLQISKLMFPLGGLMKNEV 171
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R A LP+ RKDSQGICFLGKI ++EF+ R +GE EG I+E ETG +G H G+WF
Sbjct: 172 RDIARIAKLPSAQRKDSQGICFLGKINYNEFLRRFLGEKEGDIIEMETGKRIGTHKGYWF 231
Query: 259 YTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNY-----YSFDKKRRLFRVGSLKWLSGL 313
+TIGQR+GL L GGPW+V+ KD+ N+++VS Y Y D F + G
Sbjct: 232 HTIGQRKGLGLGGGPWFVIRKDIDENIIYVSHGYDTDKQYGTDFALHDFHFITEDLWKGA 291
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P ++S K+RH F L E +N+ + QG+A GQF Y
Sbjct: 292 PSADVS---FKIRHTDTFMKGILTRE------DNLFRIHSHVPLQGIAPGQFGVLYDKNA 342
Query: 374 --CIGSGVILES 383
C+GSG I S
Sbjct: 343 EICVGSGEITLS 354
>sp|Q0BP64|MNMA_FRATO tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=mnmA PE=3 SV=2
Length = 359
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 214/368 (58%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ T EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 122 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 237 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 297 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 351
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 352 CLGGGVII 359
>sp|Q2A5X5|MNMA_FRATH tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=mnmA PE=3 SV=1
Length = 359
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 214/368 (58%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ T EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 122 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 237 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 297 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 351
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 352 CLGGGVII 359
>sp|A7N9A5|MNMA_FRATF tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=mnmA PE=3 SV=1
Length = 359
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 214/368 (58%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ T EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 122 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 237 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 297 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 351
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 352 CLGGGVII 359
>sp|Q0HJT7|MNMA_SHESM tRNA-specific 2-thiouridylase MnmA OS=Shewanella sp. (strain MR-4)
GN=mnmA PE=3 SV=1
Length = 372
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 207/374 (55%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF+D A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I AE G+ +GK
Sbjct: 179 LEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLPAQPGNIETAE-GEVIGK 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD+K NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMLVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P E S++ K R+ C L +++D N V E + GQ A
Sbjct: 298 LHWVDRKGPAEGSQIVVKTRYRQQDIPCTLT--YLDD---NTLKVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>sp|A0KW11|MNMA_SHESA tRNA-specific 2-thiouridylase MnmA OS=Shewanella sp. (strain ANA-3)
GN=mnmA PE=3 SV=1
Length = 372
Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 206/374 (55%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF+D A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I AE G+ +GK
Sbjct: 179 LEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLPAQPGNIETAE-GEIIGK 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G + T+GQR+GL + G PWYVV+KD+K NV+ V + + V
Sbjct: 238 HQGLMYQTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMLVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P E S++ K R+ C L +++D N V E + GQ A
Sbjct: 298 LHWVDRKGPAEGSQIVVKTRYRQQDIPCTLT--YLDD---NTLKVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>sp|A3QD79|MNMA_SHELP tRNA-specific 2-thiouridylase MnmA OS=Shewanella loihica (strain
ATCC BAA-1088 / PV-4) GN=mnmA PE=3 SV=1
Length = 371
Score = 255 bits (651), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 145/378 (38%), Positives = 211/378 (55%), Gaps = 29/378 (7%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P+ G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 6 PNPNGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + +S + V D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVRRSDASGQSQMLRGV-----DGNKDQSYFLYTLSHEQIARSLFPVGE 177
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF++F+ + G I AE G+ +G+
Sbjct: 178 LEKSEVREIAKEMGLVTHDKKDSTGICFIGERKFTDFLRTFLPAQPGKIETAE-GEVIGE 236
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG- 305
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + K RL VG
Sbjct: 237 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLVVGQG----GKHPRLMSVGF 292
Query: 306 ---SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAA 362
L W+ P + +++ K R+ C L E G + I V+ E +
Sbjct: 293 YADQLHWVDRTGPNDGAKITVKTRYRQQDVACTLTYE----GDDRIKVI-FDEPVAAVTP 347
Query: 363 GQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 348 GQSAVFYDGEVCLGGGII 365
>sp|Q0HW33|MNMA_SHESR tRNA-specific 2-thiouridylase MnmA OS=Shewanella sp. (strain MR-7)
GN=mnmA PE=3 SV=1
Length = 372
Score = 255 bits (651), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 207/374 (55%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF+D A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I AE G+ +GK
Sbjct: 179 LEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLPAQPGNIETAE-GEVIGK 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD+K NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMFVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P E S++ K R+ C L +++D N V E + GQ A
Sbjct: 298 LHWVDRKGPVEGSQIVVKTRYRQQDIPCTLT--YLDD---NTLKVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGDVCLGGGII 366
>sp|Q5NEF9|MNMA_FRATT tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=mnmA PE=3 SV=2
Length = 359
Score = 254 bits (650), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 213/368 (57%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 122 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 237 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 297 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 351
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 352 CLGGGVII 359
>sp|B2SEJ7|MNMA_FRATM tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=mnmA PE=3 SV=1
Length = 359
Score = 254 bits (650), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 213/368 (57%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 122 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 237 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 297 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 351
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 352 CLGGGVII 359
>sp|Q14FW2|MNMA_FRAT1 tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=mnmA PE=3 SV=2
Length = 359
Score = 254 bits (650), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 213/368 (57%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 122 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 237 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 297 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 351
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 352 CLGGGVII 359
>sp|A4J081|MNMA_FRATW tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=mnmA PE=3 SV=1
Length = 359
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 213/368 (57%), Gaps = 19/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + +Y+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLIKYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+ +AD + L D KDQTYFL L Q QL++ IFP+G I K +VR
Sbjct: 122 ATGHYAQ-TRLAADGSVQ---LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + +L D+KDS GICF+G+ KF EF+++++ +G I + E G +G H G +Y
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHD-ENGIKIGMHDGLMYY 236
Query: 260 TIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++G+
Sbjct: 237 TIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGM 296
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 297 APADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDV 351
Query: 374 CIGSGVIL 381
C+G GVI+
Sbjct: 352 CLGGGVII 359
>sp|Q6LT18|MNMA_PHOPR tRNA-specific 2-thiouridylase MnmA OS=Photobacterium profundum
GN=mnmA PE=3 SV=1
Length = 377
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 209/381 (54%), Gaps = 19/381 (4%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
L +M KV V +SGGVDSSV+ LL G+ ++K W ++D E + C
Sbjct: 3 LKRNMSDNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNEEY---CSAA 59
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
ED+ A+AVCD++ + L ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF+
Sbjct: 60 EDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFL 119
Query: 129 D-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI 187
+ A +E DY+A GHY + +A+ E KP +L D KDQ+YFL LS Q+ R +
Sbjct: 120 EFADEVLEADYIAMGHYTRRSFPTAEGE-KPKMLR-GVDSNKDQSYFLYTLSHEQIARSL 177
Query: 188 FPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETG 247
FP+G + K EVR+ A + DL +KDS GICF+G+ KF+EF+ +++ G I A+ G
Sbjct: 178 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLPAQPGKIETADEG 237
Query: 248 DFLGKHWGFWFYTIGQRQGLRLPG--------GPWYVVEKDVKNNVVFVSRNYYSFDKKR 299
+G+H G ++T+GQR+GL + G WYVV+KD+K NV+ V + K
Sbjct: 238 KVIGEHQGLMYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPRLKS 297
Query: 300 RLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQG 359
L W+ P E K R+ C ++ ++D ENI V+ E
Sbjct: 298 NGLVASQLDWVDRQPIRETMTCTVKTRYRQEDIPCTII--PIDD--ENIKVI-FDEPQIA 352
Query: 360 LAAGQFAAFYQGTRCIGSGVI 380
+ GQ A FY C+G G+I
Sbjct: 353 VTPGQSAVFYSNEICLGGGII 373
>sp|Q8CX40|MNMA_SHEON tRNA-specific 2-thiouridylase MnmA OS=Shewanella oneidensis (strain
MR-1) GN=mnmA PE=3 SV=1
Length = 372
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 205/374 (54%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D E + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNEDGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A Q L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHEVREIAKQMGLITHDKKDSTGICFIGERKFTEFLGNYLPAQPGNI-ETADGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD+K NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMLVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P S++ K R+ C L +++D N V E + GQ A
Sbjct: 298 LHWVDRKGPINGSQIVVKTRYRQQDIPCTLT--YLDD---NTLKVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>sp|A0Q454|MNMA_FRATN tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
novicida (strain U112) GN=mnmA PE=3 SV=1
Length = 359
Score = 252 bits (644), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 212/370 (57%), Gaps = 23/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+D+ A+AVCD
Sbjct: 5 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYA--KVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA +V+ + Q K D KDQTYFL L Q QL++ IFP+G I K +
Sbjct: 122 ATGHYARTRVLEDGSVQLVK------GLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSK 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + +L D+KDS GICF+G+ KF EF+++ + +G I + E G +G H G
Sbjct: 176 VREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLPAQKGEIHD-ENGIKIGMHDGLM 234
Query: 258 FYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + P PW+ +KD++NNV+ + + ++ + L W++
Sbjct: 235 YYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVA 294
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G+ P + R KVR+ +C +E +DG N V + + + GQ FY
Sbjct: 295 GMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYID 349
Query: 372 TRCIGSGVIL 381
C+G GVI+
Sbjct: 350 DVCLGGGVII 359
>sp|A1S7B1|MNMA_SHEAM tRNA-specific 2-thiouridylase MnmA OS=Shewanella amazonensis
(strain ATCC BAA-1098 / SB2B) GN=mnmA PE=3 SV=1
Length = 377
Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 204/368 (55%), Gaps = 21/368 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C ED+K A+AVCD
Sbjct: 18 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDTDEY---CAAAEDLKDAQAVCD 74
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A ++ DY
Sbjct: 75 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 134
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + D + K +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 135 IAMGHYVR----RRDTDGKTEMLR-GIDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 189
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ KF +F+A ++ G I E GD +G+H G +
Sbjct: 190 RRIAEEQGLITHDKKDSTGICFIGERKFKDFLATYLPAQPGNI-ETPEGDIIGRHEGLMY 248
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYVV+KD+ NV+ V++ + + RV L W+
Sbjct: 249 HTLGQRKGLGIGGMKNSNDDPWYVVDKDMARNVLVVAQGHEHPRLMSKGMRVNQLHWVDR 308
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P + + + K R+ C + I E V E + GQ A FY G
Sbjct: 309 TGPADGATISVKTRYRQQDIPCTVKIID-----EQTIEVLFDEPVAAVTPGQSAVFYDGE 363
Query: 373 RCIGSGVI 380
C+G G+I
Sbjct: 364 VCLGGGII 371
>sp|B0TW32|MNMA_FRAP2 tRNA-specific 2-thiouridylase MnmA OS=Francisella philomiragia
subsp. philomiragia (strain ATCC 25017) GN=mnmA PE=3
SV=1
Length = 359
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 208/370 (56%), Gaps = 23/370 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
K+ V +SGGVDSSV+ LL G+ T ++K W ++D + F C E+ + A+AVCD
Sbjct: 5 KIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQHIADAQAVCD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +P + ++ EYW NV + + EY+ GRTPNPD+LCN IKF AF+ + + DY+
Sbjct: 62 SIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 121
Query: 140 ASGHYA--KVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA KV+ + Q K D KDQTYFL L Q QLK+ +FP+G I K
Sbjct: 122 ATGHYARTKVIDDGSVQLVK------GLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKSR 175
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR+ A + +L D+KDS GICF+G+ KF +F+++ + +G I + E G +G H G
Sbjct: 176 VREIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLPAQKGEIHD-ENGIKIGMHDGLM 234
Query: 258 FYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + P PW+ +KD++NNV+ + + + + L W++
Sbjct: 235 YYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSWVA 294
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G P + R KVR+ C++ + + DG N+ E + + GQ FY
Sbjct: 295 GSAPADSFRCSAKVRYRQKDQPCSVEVNN--DGSVNVV---FDEPQRAITPGQSVVFYDN 349
Query: 372 TRCIGSGVIL 381
C+G G+I+
Sbjct: 350 DVCLGGGIII 359
>sp|Q82VV0|MNMA_NITEU tRNA-specific 2-thiouridylase MnmA OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=mnmA PE=3 SV=1
Length = 362
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 144/374 (38%), Positives = 208/374 (55%), Gaps = 24/374 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ T ++K W ++D + + C +D A +V D
Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYDVTGLFMKNWEEDDTDEY---CSSRQDFLDAASVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+D+PLEVV+ + EY + V + ++EY+ GRTPNPDVLCN+ IKF AF+D ++ D++
Sbjct: 62 ILDIPLEVVNFSTEYRERVFNLFLKEYQAGRTPNPDVLCNSEIKFRAFLDHALNLGADWI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V + + +L K D KDQ+YFL L+Q QL IFP+G + K E
Sbjct: 122 ATGHYAQVHETDG-------LFQLLKGEDGNKDQSYFLYRLNQQQLSHTIFPIGHLYKRE 174
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VRK A + LPN +KDS GICF+G+ F EF+ R++ G I + +G+H G
Sbjct: 175 VRKIAREHRLPNSTKKDSTGICFIGERPFREFLNRYLPANPGEIHTLDD-QVVGEHLGVM 233
Query: 258 FYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + G PW+V KD+K NV++V + + R L W+S
Sbjct: 234 YYTIGQRQGLGIGGTRQGSEQPWFVSGKDIKKNVLYVVQGHDHPALLRSSLTAADLSWIS 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G PP + K+R+ C I H E + + + G+ GQ Y+
Sbjct: 294 GTPPHQNWVYAAKIRYRQTDAPC--AITHFE---HDSCQIGFAAPQWGITPGQSVVVYES 348
Query: 372 TRCIGSGVILESWD 385
C+G GVI+ S D
Sbjct: 349 KVCLGGGVIIGSND 362
>sp|Q3IH16|MNMA_PSEHT tRNA-specific 2-thiouridylase MnmA OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=mnmA PE=3 SV=1
Length = 366
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 214/379 (56%), Gaps = 29/379 (7%)
Query: 13 MPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMK 72
M +KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K
Sbjct: 1 MSENSHIKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAADDLK 57
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 58 DAQAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAA 117
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
++ D++A+GHY + D +Y V+ D KDQ+YFL LS + + +FP+G
Sbjct: 118 QALGADFIATGHYVR--RELRDDKY---VMCRGLDDNKDQSYFLYTLSHEHIGQTLFPVG 172
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
I+K EVR+ A + DL D+KDS GICF+G+ KF +F+ + + GVI E G+ +G
Sbjct: 173 DIAKPEVRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLPAQPGVI-EDTDGNNVG 231
Query: 252 KHWGFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG 305
+H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + RL+ G
Sbjct: 232 EHEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLIVGQG----KDHPRLYSNG 287
Query: 306 ----SLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLA 361
L W+ + P+ +R K R+ +C L++ G + +A V E + +
Sbjct: 288 LNANQLHWVDRIGPKGTTRCTVKTRYRQEDLSCTLLV-----GEDGMARVLFDEPQKAVT 342
Query: 362 AGQFAAFYQGTRCIGSGVI 380
GQ A FY C+G G+I
Sbjct: 343 PGQSAVFYAEDVCLGGGII 361
>sp|Q2SRW8|MNMA_MYCCT tRNA-specific 2-thiouridylase MnmA OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=mnmA PE=3 SV=1
Length = 375
Score = 249 bits (635), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 141/377 (37%), Positives = 213/377 (56%), Gaps = 26/377 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------CPWEEDMK 72
KV V LSGGVDSSVA LL G+ +++ W + CP E+D
Sbjct: 4 KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINDDICPQEQDYL 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAV D++++ L V EYW V SY IEEY+ RTPNPD+LCN IKF F++ AI
Sbjct: 64 DAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ + DY+A GHYAKV + ++Y+ L + D KDQTYFLS L+Q QL + +FPL
Sbjct: 124 NQLNADYIAMGHYAKVEFNKTTKQYE---LIKASDINKDQTYFLSQLNQNQLSKTLFPLA 180
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++KE+VRK A + +L ++KDS GICF+G+ F+ F+ +I G I++ +T LG
Sbjct: 181 NLTKEQVRKIALEQNLITANKKDSTGICFIGERNFTSFLQNYIPSQTGDIVDIKTNKVLG 240
Query: 252 KHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFR----VG 305
KH G +YTIGQR+G+ L G P+YV +KDVK N+++V S + L+ V
Sbjct: 241 KHIGIMYYTIGQRKGINLSGMSEPYYVADKDVKKNILYVC----STSDQSYLYSTSCLVN 296
Query: 306 SLKWLSGLPP--EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAG 363
+ W+ + +++++ +C+ + + ++++ ++D N V + + + G
Sbjct: 297 DINWILDISKYVDDVNQFECQAKFRYRQLDNKVVVKKIDD---NNYKVMFKKPLKAITIG 353
Query: 364 QFAAFYQGTRCIGSGVI 380
Q A FY C+G VI
Sbjct: 354 QQAVFYLDDICLGGAVI 370
>sp|Q9KSX8|MNMA_VIBCH tRNA-specific 2-thiouridylase MnmA OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=mnmA PE=3
SV=1
Length = 372
Score = 248 bits (632), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 70 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEV 186
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 245
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 246 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 305
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 306 TPITEPVRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 360
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 361 ICLGGGIIEE 370
>sp|A5F2F2|MNMA_VIBC3 tRNA-specific 2-thiouridylase MnmA OS=Vibrio cholerae serotype O1
(strain ATCC 39541 / Ogawa 395 / O395) GN=mnmA PE=3 SV=1
Length = 372
Score = 248 bits (632), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 201/370 (54%), Gaps = 19/370 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D E + C ED+ A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEEY---CTAAEDLADAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ +PL ++ EYW NV Y + EY+ GRTPNPD+LCN IKF AF++ A ++ DY
Sbjct: 70 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + + KP +L D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVRRTFPQNGE--KPQMLR-GLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEV 186
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L +KDS GICF+G+ KF++F++R++ G I E G +G+H G +
Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLPAQPGKI-ETPEGKVIGEHQGLMY 245
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
+T+GQR+GL + G PWYV +KD+K NV+ + K L W+
Sbjct: 246 HTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVDR 305
Query: 313 LPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
P E R K R+ C ++ ++ V E + GQ A FYQG
Sbjct: 306 TPITEPVRCSVKTRYRQSDIACTII-----PLSDDRIKVMFDEPQVAVTPGQSAVFYQGE 360
Query: 373 RCIGSGVILE 382
C+G G+I E
Sbjct: 361 ICLGGGIIEE 370
>sp|A4IR87|MNMA_GEOTN tRNA-specific 2-thiouridylase MnmA OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=mnmA PE=3 SV=1
Length = 371
Score = 248 bits (632), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 143/371 (38%), Positives = 206/371 (55%), Gaps = 18/371 (4%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
PH+ +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 5 PHET--RVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYED 59
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS 133
VC+Q+ +P V+ +YW V +Y + EY+ GRTPNPDV+CN IKF AF++ S
Sbjct: 60 VVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHAMS 119
Query: 134 MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
+ DYVA+GHYA+V D EYK + D KDQTYFL+ L QAQL +++FP+G +
Sbjct: 120 IGADYVATGHYARV--EFRDGEYK---MLRGADPNKDQTYFLNQLGQAQLSKVMFPIGHL 174
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K +VR+ A + L +KDS GICF+G+ F EF++ ++ GV ++ G+ G+H
Sbjct: 175 QKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLPAQPGV-MKTLDGEVKGRH 233
Query: 254 WGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
G +YTIGQR GL + G PW+VV KDV+ NV++V++ + + + + W+S
Sbjct: 234 DGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVS 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
PE R K R+ + +M+ + DG A V + + GQ FY G
Sbjct: 294 DRKPEAPFRCTAKFRYRQP--DIGVMVHPLADGK---AEVVFDAPARAVTPGQAVVFYNG 348
Query: 372 TRCIGSGVILE 382
C+G G I E
Sbjct: 349 DECLGGGTIDE 359
>sp|Q5KWT8|MNMA2_GEOKA tRNA-specific 2-thiouridylase MnmA 2 OS=Geobacillus kaustophilus
(strain HTA426) GN=mnmA2 PE=3 SV=1
Length = 371
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 206/371 (55%), Gaps = 18/371 (4%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
PH+ +V V +SGGVDSSVA LL G+ ++K W D EN C ED +
Sbjct: 5 PHET--RVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTD-EN--GVCTATEDYED 59
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS 133
VC+Q+ +P V+ +YW V +Y + EY+ GRTPNPDV+CN IKF AF++ S
Sbjct: 60 VVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHAMS 119
Query: 134 MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCI 193
+ DY+A+GHYA+V D EYK + D KDQTYFL+ L QAQL +++FP+G +
Sbjct: 120 IGADYIATGHYARV--EFRDGEYK---MLRGADPNKDQTYFLNQLGQAQLSKVMFPIGHL 174
Query: 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKH 253
K +VR+ A + L +KDS GICF+G+ F EF++ ++ GV ++ G+ G+H
Sbjct: 175 QKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLPAQPGV-MKTLDGEVKGRH 233
Query: 254 WGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
G +YTIGQR GL + G PW+VV KDV+ NV++V++ + + + + W+S
Sbjct: 234 DGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVS 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
PE R K R+ + + + + DGG A V + + GQ FY G
Sbjct: 294 DRKPEAPFRCTAKFRYRQP--DVGVTVHPLADGG---AEVVFDAPARAVTPGQAVVFYNG 348
Query: 372 TRCIGSGVILE 382
C+G G I E
Sbjct: 349 EECLGGGTIDE 359
>sp|Q2Y6T6|MNMA_NITMU tRNA-specific 2-thiouridylase MnmA OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=mnmA PE=3 SV=1
Length = 363
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 207/375 (55%), Gaps = 24/375 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W +D + + C +D+ A +V D
Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYEVIGLFMKNWEDDDTDEY---CSSRQDLIDAASVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ +PLE V+ + EY + V S+ + EY+ GRTPNPDVLCN IKF AF+D + + DY+
Sbjct: 62 VIGIPLEAVNFSAEYKERVFSHFLAEYKAGRTPNPDVLCNAEIKFKAFLDHAAGLGADYI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEE 197
A+GHYA+V ++ V +L K D KDQ+YFL L+QAQL R +FP+G + K +
Sbjct: 122 ATGHYAQVRNTDG-------VFQLLKGEDGTKDQSYFLYRLNQAQLSRALFPIGHLYKRD 174
Query: 198 VRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257
VR A LPN +KDS GICF+G+ F EF+ R++ G I +GD +G+H G
Sbjct: 175 VRSIAKDHGLPNFSKKDSTGICFIGERPFREFLNRYLPNDPGEI-RTPSGDVMGRHAGLM 233
Query: 258 FYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLS 311
+YTIGQRQGL + G PW+V EKDVK NV+ V + + D R L W+S
Sbjct: 234 YYTIGQRQGLGIGGTRGGDGEPWFVSEKDVKRNVLTVVQGHDHPDLLRPALAATDLTWVS 293
Query: 312 GLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG 371
G P K+R+ C++ N ++ ++ +A GQ Y+
Sbjct: 294 GKMPRCNWVYAAKIRYRQSDAPCSITYLDC-----NKCKIEFAQPQWAVAPGQSVVVYES 348
Query: 372 TRCIGSGVILESWDD 386
C+G GVI + DD
Sbjct: 349 KVCLGGGVIAATQDD 363
>sp|Q081F9|MNMA_SHEFN tRNA-specific 2-thiouridylase MnmA OS=Shewanella frigidimarina
(strain NCIMB 400) GN=mnmA PE=3 SV=1
Length = 372
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/376 (37%), Positives = 205/376 (54%), Gaps = 24/376 (6%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G ++K W ++D + + C +D+K
Sbjct: 6 PTSNGKKVIVGMSGGVDSSVSAYLLMQQGFEVEGLFMKNWEEDDTDEY---CAAADDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + + V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADD 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSK--DKVKDQTYFLSHLSQAQLKRLIFPL 190
++ DY+A GHY + +S +E+ + D KDQ+YFL LS Q+ R +FP+
Sbjct: 123 ILDADYIAMGHYVRRRDNS------DGSVEMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176
Query: 191 GCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFL 250
G + K +VR+ A + L D+KDS GICF+G+ KF++F+A ++ G I E G+ +
Sbjct: 177 GELEKHQVREIAQKLGLITHDKKDSTGICFIGERKFTDFLATYLPAQPGDI-ETSEGEVI 235
Query: 251 GKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRV 304
G H G ++T+GQR+GL + G PWYVVEKD+ NV+ V++ V
Sbjct: 236 GTHQGLMYHTLGQRKGLGIGGLKNSNEDPWYVVEKDLVRNVLIVAQGGNHPRLMSTGMTV 295
Query: 305 GSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQ 364
L W+ P S + K R+ C L D +NI V+ E + GQ
Sbjct: 296 NQLHWVDRTGPANNSTITVKTRYRQRDVGCTLTY----DDADNITVM-FDEPVAAVTPGQ 350
Query: 365 FAAFYQGTRCIGSGVI 380
A FY G C+G G+I
Sbjct: 351 SAVFYDGDICLGGGII 366
>sp|Q0ADM9|MNMA_NITEC tRNA-specific 2-thiouridylase MnmA OS=Nitrosomonas eutropha (strain
C91) GN=mnmA PE=3 SV=1
Length = 361
Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 206/371 (55%), Gaps = 22/371 (5%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W +D + + C +D A +V D
Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYDVIGLFMKNWEDDDTDEY---CSSRKDFLDAASVAD 61
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+D+PLE V+ + EY + V S + EY+ GRTPNPDVLCN+ IKF AF+D ++ D++
Sbjct: 62 ILDIPLEAVNFSAEYRERVFSLFLAEYQAGRTPNPDVLCNSEIKFKAFLDHALALGADWI 121
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHYA+V + + L +D KDQ+YFL L+Q QL R IFP+G + K EVR
Sbjct: 122 ATGHYAQVHEINGQFQ-----LLKGEDGNKDQSYFLYRLNQQQLSRTIFPIGHLYKREVR 176
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
K A + LPN +KDS GICF+G+ F EF+ R++ G I + G +G+H G +Y
Sbjct: 177 KIAHKHGLPNSTKKDSTGICFIGERPFREFLNRYLPVDPGEIHTLD-GQIVGEHQGLMYY 235
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G PW+V KD++ NV++V + + R L W+SG
Sbjct: 236 TIGQRQGLGIGGIREGSEQPWFVSGKDMQTNVLYVVQGHDHPALLRSSLTAADLSWISGA 295
Query: 314 PPEEISRLQCKVRHGPGFYNCNLM-IEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGT 372
PP + K+R+ C ++ +EH + + + G+ GQ Y+
Sbjct: 296 PPHQSWVYAAKIRYRQTDAPCAIIRLEH------DSCQIGFAAPQWGVTPGQSVVIYESK 349
Query: 373 RCIGSGVILES 383
C+G G+I +S
Sbjct: 350 VCLGGGIITDS 360
>sp|Q6MTG1|MNMA_MYCMS tRNA-specific 2-thiouridylase MnmA OS=Mycoplasma mycoides subsp.
mycoides SC (strain PG1) GN=mnmA PE=3 SV=1
Length = 375
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 207/373 (55%), Gaps = 18/373 (4%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTE-------CPWEEDMK 72
KV V LSGGVDSSVA LL G+ +++ W + CP E+D
Sbjct: 4 KVIVGLSGGVDSSVACYLLLEQGYEVEGLFMRNWDSATNNDILGNRNINDDICPQEQDYL 63
Query: 73 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AI 131
AKAV D++++ L V EYW V SY IEEY+ RTPNPD+LCN IKF F++ AI
Sbjct: 64 DAKAVADKLNIKLYRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123
Query: 132 SSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLG 191
+ + DY+A GHYAKV + +Y+ L + D KDQTYFLS L+Q QL + +FPL
Sbjct: 124 NQLNADYIAMGHYAKVEFNKTTNQYE---LIKASDTNKDQTYFLSQLNQKQLSKTLFPLA 180
Query: 192 CISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLG 251
++KE+VRK A + +L ++KDS GICF+G+ F+ F+ +I G I++ +T LG
Sbjct: 181 NLTKEQVRKIALKQNLITANKKDSTGICFIGERSFTNFLQNYIPNQTGDIVDIKTNKVLG 240
Query: 252 KHWGFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKW 309
+H G +YTIGQR+G+ L G P+YV +KDVK N+++V V + W
Sbjct: 241 QHIGVMYYTIGQRKGINLSGMSEPYYVADKDVKKNILYVCSTSDQSYLHSTSCLVNDINW 300
Query: 310 LSGLPP--EEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAA 367
+ + ++I++ +C+ + + ++++ ++D + + + + GQ A
Sbjct: 301 ILDISKYVDDINQFECQAKFRYRQIDNKVVVKKIDDNNYQVI---FKKPLKAITIGQQAV 357
Query: 368 FYQGTRCIGSGVI 380
FY C+G VI
Sbjct: 358 FYLNDICLGGAVI 370
>sp|A1U1H5|MNMA_MARAV tRNA-specific 2-thiouridylase MnmA OS=Marinobacter aquaeolei
(strain ATCC 700491 / DSM 11845 / VT8) GN=mnmA PE=3 SV=1
Length = 392
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 212/396 (53%), Gaps = 27/396 (6%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
+V V +SGGVDSSVA LL G+ ++K W ++D + C D+ A+AV D
Sbjct: 14 RVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTEY---CTAMTDLADAQAVAD 70
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
+ + L EYW V + + EY GRTPNPD+LCN +KF AF+D ++ DY+
Sbjct: 71 AIGIKLHTASFAAEYWDRVFEHFLSEYSAGRTPNPDILCNKEVKFRAFLDYAVTLGADYI 130
Query: 140 ASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVR 199
A+GHY + D K +L+ D KDQ+YFL +S ++ R +FP+G + K EVR
Sbjct: 131 ATGHYTR-QRPLNDGSGKAQLLK-GLDPNKDQSYFLHAVSGERIARTLFPVGELEKPEVR 188
Query: 200 KFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259
+ A + D+KDS GICF+G+ KF++F+ +++ G I E G +GKH G ++
Sbjct: 189 RIAEEQGFVTHDKKDSTGICFIGERKFTDFLKQYLPAQPGNI-ETPDGTVIGKHQGLMYH 247
Query: 260 TIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL 313
TIGQRQGL + G PWYV EKD+K NV+ + + R G + W++G
Sbjct: 248 TIGQRQGLGIGGLAEFGDEPWYVAEKDLKRNVLIAVQGKHHPLLFSRGLVSGPVDWVAGE 307
Query: 314 PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTR 373
PP + R + K R+ +C + V DGG + + + + GQ FYQG
Sbjct: 308 PPAQKFRCKAKTRYRQPDQDCEVT---VIDGGVKVV---FDDAQRAVTPGQSVVFYQGEV 361
Query: 374 CIGSGVILESW-DDQGFPVCEKALEIARMEDKSKLG 408
C+G GVI ++W D++ P AR+E ++ G
Sbjct: 362 CLGGGVIEQTWRDNEALP--------ARLEHQASEG 389
>sp|A3D5F8|MNMA_SHEB5 tRNA-specific 2-thiouridylase MnmA OS=Shewanella baltica (strain
OS155 / ATCC BAA-1091) GN=mnmA PE=3 SV=2
Length = 372
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 298 LHWVDRTGPVDGCHIAVKTRYRQQDVPCTLTYTD-----EHTLGVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>sp|B8E945|MNMA_SHEB2 tRNA-specific 2-thiouridylase MnmA OS=Shewanella baltica (strain
OS223) GN=mnmA PE=3 SV=1
Length = 372
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 298 LHWVDRTGPVDGCHIAVKTRYRQQDVPCTLTYTD-----EHTLGVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>sp|A6WP69|MNMA_SHEB8 tRNA-specific 2-thiouridylase MnmA OS=Shewanella baltica (strain
OS185) GN=mnmA PE=3 SV=2
Length = 372
Score = 245 bits (625), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 298 LHWVDRTGPVDGCHIAVKTRYRQQDVPCTLTYTD-----EHTLRVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>sp|Q12N64|MNMA_SHEDO tRNA-specific 2-thiouridylase MnmA OS=Shewanella denitrificans
(strain OS217 / ATCC BAA-1090 / DSM 15013) GN=mnmA PE=3
SV=2
Length = 372
Score = 245 bits (625), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 143/380 (37%), Positives = 207/380 (54%), Gaps = 22/380 (5%)
Query: 9 LSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE 68
++ P G KV V +SGGVDSSV+ LL G+ ++K W ++D + + C
Sbjct: 1 MTSIKPIHNGKKVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMKNWEEDDTDEY---CAAA 57
Query: 69 EDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFM 128
+D+K A+AVCD++ + + V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF+
Sbjct: 58 DDLKDAQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFL 117
Query: 129 D-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSK-DKVKDQTYFLSHLSQAQLKRL 186
+ A ++ DY+A GHY + +S SV L D KDQ+YFL LS Q+ R
Sbjct: 118 EFADDILDADYIAMGHYVRRRDNS-----DGSVQMLRGVDGNKDQSYFLYTLSHEQVARS 172
Query: 187 IFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAET 246
+FP+G + K EVR A Q L D+KDS GICF+G+ KF++F+A ++ G I E
Sbjct: 173 LFPVGELEKHEVRDIAKQMGLITHDKKDSTGICFIGERKFTDFLATYLPAQPGDI-ETPE 231
Query: 247 GDFLGKHWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRR 300
G+ +GKH G ++T+GQR+GL + G PWYVVEKD+ NV+ V++ +
Sbjct: 232 GEVIGKHQGLMYHTLGQRKGLGIGGLKDSNEDPWYVVEKDLLRNVLIVAQGGNHPRLMSQ 291
Query: 301 LFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGL 360
V L W+ P S+L K R+ C + D + I V+ +
Sbjct: 292 GMTVNQLHWVDRKGPATDSQLVVKTRYRQTDVPCRISF----DDPQRITVI-FDSPVAAV 346
Query: 361 AAGQFAAFYQGTRCIGSGVI 380
GQ A FY G C+G G+I
Sbjct: 347 TPGQSAVFYDGDVCLGGGII 366
>sp|A9L4G9|MNMA_SHEB9 tRNA-specific 2-thiouridylase MnmA OS=Shewanella baltica (strain
OS195) GN=mnmA PE=3 SV=2
Length = 372
Score = 244 bits (624), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 138/374 (36%), Positives = 199/374 (53%), Gaps = 20/374 (5%)
Query: 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKY 73
P G KV V +SGGVDSSV+ LL G+ ++K W ++D + C ED+K
Sbjct: 6 PTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKD 62
Query: 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AIS 132
A+AVCD++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A
Sbjct: 63 AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADE 122
Query: 133 SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGC 192
++ DY+A GHY + D + + D KDQ+YFL LS Q+ R +FP+G
Sbjct: 123 ILDADYIAMGHYVR----RRDNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGE 178
Query: 193 ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGK 252
+ K EVR+ A + L D+KDS GICF+G+ KF+EF+ ++ G I E G+ +G
Sbjct: 179 LEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLPAQPGNI-ETPEGEVIGT 237
Query: 253 HWGFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGS 306
H G ++T+GQR+GL + G PWYVV+KD++ NV+ V + + V
Sbjct: 238 HQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMTVNQ 297
Query: 307 LKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFA 366
L W+ P + + K R+ C L E+ V E + GQ A
Sbjct: 298 LHWVDRTGPIDGCHIAVKTRYRQQDVPCTLTYTD-----EHTLRVVFDEPVAAVTPGQSA 352
Query: 367 AFYQGTRCIGSGVI 380
FY G C+G G+I
Sbjct: 353 VFYDGEVCLGGGII 366
>sp|Q5X5H6|MNMA_LEGPA tRNA-specific 2-thiouridylase MnmA OS=Legionella pneumophila
(strain Paris) GN=mnmA PE=3 SV=1
Length = 361
Score = 244 bits (624), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 205/370 (55%), Gaps = 26/370 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSVA LL G+ ++K W Q+D +F CP +D+ A+AVC+
Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHNDF---CPAAKDLADAQAVCN 60
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYV 139
Q+ +PL V+ + EYW V +Y + EY GRTPNPDVLCN IKF AF++ ++ DY+
Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGADYI 120
Query: 140 ASGHYAK-VVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
A+GHYAK + S +K +KD+ KDQTYFL + L + IFP+G +K ++
Sbjct: 121 ATGHYAKNTIEGSIGYLFK------AKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQI 174
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+FA Q L +KDS GICF+G+ +F F+ I G I ++ G LG+H G F
Sbjct: 175 REFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFILAKPGEI-KSTGGKTLGQHDGLMF 233
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSG 312
YT+GQRQGL + G PWYVV+KD+ +N ++V++ + G + WL+
Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293
Query: 313 LPPEEISRLQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ 370
E L C K R+ C MI ++ N+ V S + + GQF FY+
Sbjct: 294 Y--ENHLPLTCFAKTRYRQTDQAC--MISPPDN---NLHYVIFSSPQRAITPGQFIVFYE 346
Query: 371 GTRCIGSGVI 380
+C+G I
Sbjct: 347 KNQCLGGATI 356
>sp|A8FUG9|MNMA_SHESH tRNA-specific 2-thiouridylase MnmA OS=Shewanella sediminis (strain
HAW-EB3) GN=mnmA PE=3 SV=1
Length = 372
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 210/372 (56%), Gaps = 29/372 (7%)
Query: 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCD 79
KV V +SGGVDSSV+ LL G+ ++K W ++D + + C +D+K A+AVCD
Sbjct: 13 KVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 69
Query: 80 QVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD-AISSMEFDY 138
++ + L V+ EYW NV Y + EY+ GRTPNPD++CN IKF AF++ A ++ DY
Sbjct: 70 KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFADDILDADY 129
Query: 139 VASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEV 198
+A GHY + +D+ + +L +D KDQ+YFL LS Q+ R +FP+G + K EV
Sbjct: 130 IAMGHYVR----RSDESGQSQMLR-GRDGNKDQSYFLYTLSHEQISRSLFPVGELEKSEV 184
Query: 199 RKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258
R+ A + L D+KDS GICF+G+ KF++F++ + G I AE G+ +GKH G +
Sbjct: 185 REIAKEMGLVTHDKKDSTGICFIGERKFTDFLSTFLPAQPGNIETAE-GEIIGKHQGLMY 243
Query: 259 YTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVG----SLK 308
+T+GQR+GL + G PWYVV+K++ NV+ V + + RL VG L
Sbjct: 244 HTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGH----HPRLMSVGFYADQLH 299
Query: 309 WLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF 368
W+ P + +++ K R+ C L E G + I V+ E + GQ A F
Sbjct: 300 WVDRKGPIDGAQITVKTRYRQRDVACTLTYE----GDDRIKVI-FDEPVAAVTPGQSAVF 354
Query: 369 YQGTRCIGSGVI 380
Y C+G G+I
Sbjct: 355 YDAELCLGGGII 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,395,525
Number of Sequences: 539616
Number of extensions: 8101774
Number of successful extensions: 25116
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 20967
Number of HSP's gapped (non-prelim): 815
length of query: 474
length of database: 191,569,459
effective HSP length: 121
effective length of query: 353
effective length of database: 126,275,923
effective search space: 44575400819
effective search space used: 44575400819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)