Query 042717
Match_columns 474
No_of_seqs 388 out of 2527
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03054 tRNA_Me_trans: tRNA m 100.0 2E-102 5E-107 795.9 26.1 352 19-380 1-356 (356)
2 COG0482 TrmU Predicted tRNA(5- 100.0 1.4E-93 3.1E-98 721.6 36.4 351 17-383 2-355 (356)
3 KOG2805 tRNA (5-methylaminomet 100.0 3.3E-91 7.1E-96 679.8 32.6 365 17-390 4-377 (377)
4 PRK14665 mnmA tRNA-specific 2- 100.0 1.2E-87 2.5E-92 691.0 36.9 341 17-381 4-359 (360)
5 TIGR00420 trmU tRNA (5-methyla 100.0 4.6E-87 9.9E-92 686.4 37.9 348 19-380 1-352 (352)
6 PRK14664 tRNA-specific 2-thiou 100.0 3.9E-87 8.5E-92 686.0 36.1 337 17-382 4-347 (362)
7 PRK00143 mnmA tRNA-specific 2- 100.0 2.6E-86 5.6E-91 680.2 38.5 344 19-381 1-346 (346)
8 cd01998 tRNA_Me_trans tRNA met 100.0 2.2E-86 4.7E-91 681.7 37.6 348 20-380 1-349 (349)
9 PRK00509 argininosuccinate syn 99.9 2.4E-27 5.2E-32 246.1 15.4 169 18-223 2-183 (399)
10 PRK08384 thiamine biosynthesis 99.9 1.4E-25 3.1E-30 232.3 16.2 173 12-224 174-354 (381)
11 PRK04527 argininosuccinate syn 99.9 1.3E-25 2.8E-30 232.5 15.4 171 18-222 2-183 (400)
12 PRK13820 argininosuccinate syn 99.9 3.3E-25 7.1E-30 230.0 15.3 168 19-222 3-179 (394)
13 PF01171 ATP_bind_3: PP-loop f 99.9 7.4E-25 1.6E-29 205.8 15.0 165 20-218 1-172 (182)
14 TIGR02432 lysidine_TilS_N tRNA 99.9 1.6E-24 3.4E-29 203.9 15.8 171 20-221 1-179 (189)
15 cd01992 PP-ATPase N-terminal d 99.9 1.5E-24 3.2E-29 202.9 14.6 168 20-221 1-175 (185)
16 cd01993 Alpha_ANH_like_II This 99.9 3E-24 6.5E-29 200.3 15.9 170 20-215 1-180 (185)
17 TIGR00268 conserved hypothetic 99.9 4.3E-23 9.3E-28 203.7 17.1 163 18-227 12-176 (252)
18 COG0037 MesJ tRNA(Ile)-lysidin 99.9 1.8E-23 4E-28 209.9 14.5 194 18-239 21-217 (298)
19 cd01997 GMP_synthase_C The C-t 99.9 3.9E-23 8.4E-28 207.9 15.4 174 20-223 1-182 (295)
20 PRK10696 tRNA 2-thiocytidine b 99.9 5.4E-23 1.2E-27 203.6 15.7 169 8-211 20-199 (258)
21 cd01712 ThiI ThiI is required 99.9 1.7E-22 3.8E-27 188.6 16.0 161 20-214 1-163 (177)
22 PLN00200 argininosuccinate syn 99.9 9.4E-23 2E-27 212.2 15.3 166 19-222 6-186 (404)
23 PRK08349 hypothetical protein; 99.9 3.4E-22 7.5E-27 190.3 17.1 163 19-221 1-171 (198)
24 cd01990 Alpha_ANH_like_I This 99.9 2.2E-22 4.9E-27 191.5 15.0 155 21-221 1-158 (202)
25 PRK00074 guaA GMP synthase; Re 99.9 6.4E-22 1.4E-26 213.2 16.0 175 18-223 215-397 (511)
26 cd01999 Argininosuccinate_Synt 99.9 4.8E-22 1E-26 206.4 14.0 169 21-222 1-179 (385)
27 TIGR00342 thiazole biosynthesi 99.9 8.9E-21 1.9E-25 197.0 16.8 171 12-221 166-342 (371)
28 TIGR00884 guaA_Cterm GMP synth 99.9 8.9E-21 1.9E-25 192.4 15.5 175 18-223 16-197 (311)
29 PRK10660 tilS tRNA(Ile)-lysidi 99.8 2.5E-20 5.3E-25 197.4 17.1 173 17-227 14-194 (436)
30 PRK00919 GMP synthase subunit 99.8 1.8E-20 3.9E-25 189.3 13.8 172 18-223 21-195 (307)
31 TIGR00032 argG argininosuccina 99.8 2.1E-20 4.4E-25 194.8 14.6 175 20-233 1-189 (394)
32 COG1606 ATP-utilizing enzymes 99.8 3.6E-20 7.8E-25 178.7 14.7 160 18-224 17-179 (269)
33 TIGR00552 nadE NAD+ synthetase 99.8 2.7E-20 5.9E-25 183.5 13.3 165 17-224 21-193 (250)
34 PRK01565 thiamine biosynthesis 99.8 5.5E-20 1.2E-24 192.5 16.3 167 12-219 170-344 (394)
35 PRK14561 hypothetical protein; 99.8 2.4E-19 5.2E-24 170.5 17.0 175 19-239 1-175 (194)
36 PF02568 ThiI: Thiamine biosyn 99.8 1.4E-19 3E-24 171.9 10.2 168 17-221 2-174 (197)
37 TIGR00364 exsB protein. This p 99.8 7.8E-19 1.7E-23 167.4 15.1 168 21-209 1-178 (201)
38 PLN02347 GMP synthetase 99.8 4E-19 8.6E-24 191.8 12.4 181 17-223 228-421 (536)
39 PRK11106 queuosine biosynthesi 99.8 6.4E-18 1.4E-22 164.6 16.0 169 19-209 2-180 (231)
40 cd00553 NAD_synthase NAD+ synt 99.8 4.3E-18 9.3E-23 167.7 13.4 163 17-220 22-192 (248)
41 cd01713 PAPS_reductase This do 99.8 1.1E-17 2.3E-22 152.6 13.9 159 20-210 1-162 (173)
42 cd01995 ExsB ExsB is a transcr 99.8 1.6E-17 3.5E-22 153.8 14.5 142 20-211 1-142 (169)
43 PRK13980 NAD synthetase; Provi 99.7 1.1E-17 2.4E-22 166.3 14.0 159 18-218 30-192 (265)
44 PRK01269 tRNA s(4)U8 sulfurtra 99.7 6.4E-17 1.4E-21 173.6 16.4 188 12-239 171-366 (482)
45 PF06508 QueC: Queuosine biosy 99.7 6E-17 1.3E-21 155.8 11.6 168 20-209 1-177 (209)
46 COG0603 Predicted PP-loop supe 99.7 2.4E-16 5.2E-21 151.1 14.1 169 18-209 2-180 (222)
47 COG0137 ArgG Argininosuccinate 99.7 7.8E-16 1.7E-20 156.4 15.8 179 17-232 3-194 (403)
48 PRK05370 argininosuccinate syn 99.7 4.9E-16 1.1E-20 161.7 13.5 171 17-223 10-200 (447)
49 PRK05253 sulfate adenylyltrans 99.6 1.9E-15 4.2E-20 152.6 14.9 165 19-210 28-206 (301)
50 cd01994 Alpha_ANH_like_IV This 99.6 2.4E-14 5.1E-19 136.3 15.9 185 20-261 1-189 (194)
51 PF00764 Arginosuc_synth: Argi 99.6 1.7E-15 3.7E-20 156.7 8.5 166 22-224 1-179 (388)
52 cd01996 Alpha_ANH_like_III Thi 99.6 1.4E-14 2.9E-19 132.0 13.0 110 20-147 3-114 (154)
53 TIGR03679 arCOG00187 arCOG0018 99.6 8.2E-14 1.8E-18 134.9 16.0 182 22-261 1-188 (218)
54 PRK00876 nadE NAD synthetase; 99.6 8.2E-14 1.8E-18 142.1 16.1 165 18-218 33-249 (326)
55 PF02540 NAD_synthase: NAD syn 99.5 3.2E-14 7E-19 139.8 11.7 160 17-219 17-182 (242)
56 PRK08576 hypothetical protein; 99.5 1.4E-13 3.1E-18 145.1 15.0 154 19-210 235-388 (438)
57 COG0301 ThiI Thiamine biosynth 99.5 1.5E-13 3.2E-18 141.7 14.3 172 12-221 169-346 (383)
58 TIGR02039 CysD sulfate adenyly 99.5 1.9E-13 4.1E-18 137.4 14.1 167 20-210 21-198 (294)
59 TIGR03573 WbuX N-acetyl sugar 99.5 2.4E-13 5.1E-18 140.2 13.6 113 19-148 60-173 (343)
60 TIGR00289 conserved hypothetic 99.5 9.4E-13 2E-17 127.6 16.6 198 19-287 1-203 (222)
61 PRK02090 phosphoadenosine phos 99.5 3E-13 6.4E-18 132.9 13.1 151 19-210 41-195 (241)
62 COG0519 GuaA GMP synthase, PP- 99.5 1.6E-13 3.4E-18 134.1 8.5 174 3-210 7-186 (315)
63 PRK13981 NAD synthetase; Provi 99.4 9.5E-13 2.1E-17 143.4 13.2 163 17-218 279-454 (540)
64 cd01986 Alpha_ANH_like Adenine 99.4 1.8E-12 3.9E-17 110.6 10.2 83 21-164 1-83 (103)
65 PRK12563 sulfate adenylyltrans 99.4 3.8E-12 8.1E-17 128.7 13.8 165 19-210 38-216 (312)
66 COG2117 Predicted subunit of t 99.4 3.6E-12 7.9E-17 115.4 11.9 175 19-237 1-175 (198)
67 PTZ00323 NAD+ synthase; Provis 99.4 8.9E-12 1.9E-16 125.6 15.0 159 17-217 45-222 (294)
68 PF01507 PAPS_reduct: Phosphoa 99.4 5.2E-12 1.1E-16 116.3 12.1 153 20-209 1-155 (174)
69 KOG1706 Argininosuccinate synt 99.4 6.8E-12 1.5E-16 123.8 13.0 168 17-228 4-193 (412)
70 PRK02628 nadE NAD synthetase; 99.3 9E-12 2E-16 139.1 13.2 147 17-205 360-521 (679)
71 PRK00768 nadE NAD synthetase; 99.3 8.8E-12 1.9E-16 123.8 11.4 158 17-217 37-211 (268)
72 COG1365 Predicted ATPase (PP-l 99.3 4.5E-11 9.7E-16 112.9 12.2 144 18-209 60-204 (255)
73 TIGR00290 MJ0570_dom MJ0570-re 99.2 4.9E-10 1.1E-14 108.7 17.2 198 19-286 1-203 (223)
74 COG0171 NadE NAD synthase [Coe 99.2 1E-10 2.2E-15 116.1 10.7 161 15-218 22-197 (268)
75 PRK08557 hypothetical protein; 99.1 1.6E-09 3.4E-14 114.3 17.8 155 18-209 181-338 (417)
76 cd01991 Asn_Synthase_B_C The C 99.1 4.6E-10 1E-14 110.8 12.3 115 17-148 14-129 (269)
77 KOG2840 Uncharacterized conser 99.1 9.6E-11 2.1E-15 117.0 6.4 216 5-244 39-267 (347)
78 TIGR00434 cysH phosophoadenyly 99.1 2E-09 4.3E-14 103.6 15.0 156 19-210 14-170 (212)
79 PRK13794 hypothetical protein; 99.1 2.5E-09 5.3E-14 115.0 16.9 155 18-210 247-405 (479)
80 COG0175 CysH 3'-phosphoadenosi 99.0 3E-09 6.5E-14 105.9 13.5 154 20-210 41-197 (261)
81 PF01902 ATP_bind_4: ATP-bindi 99.0 4.5E-10 9.7E-15 108.8 6.6 182 19-261 1-187 (218)
82 PRK13795 hypothetical protein; 99.0 8.4E-09 1.8E-13 114.5 16.5 156 18-210 243-401 (636)
83 TIGR02057 PAPS_reductase phosp 99.0 1.4E-08 3E-13 99.1 14.7 156 18-210 25-185 (226)
84 KOG1622 GMP synthase [Nucleoti 98.9 2.6E-09 5.5E-14 110.4 9.3 68 18-96 230-299 (552)
85 PF00733 Asn_synthase: Asparag 98.9 8.5E-09 1.8E-13 100.0 11.9 117 17-148 16-133 (255)
86 COG2102 Predicted ATPases of P 98.9 2.6E-08 5.6E-13 95.6 12.8 183 19-261 1-188 (223)
87 TIGR01536 asn_synth_AEB aspara 98.8 2.4E-08 5.3E-13 107.1 13.1 116 17-148 252-369 (467)
88 PLN02339 NAD+ synthase (glutam 98.7 2.4E-07 5.2E-12 104.0 15.1 67 17-94 347-451 (700)
89 PRK06850 hypothetical protein; 98.5 2.2E-06 4.8E-11 92.2 14.6 170 19-209 35-223 (507)
90 TIGR03183 DNA_S_dndC putative 98.4 4.2E-06 9.1E-11 89.0 15.2 172 19-209 14-204 (447)
91 cd01984 AANH_like Adenine nucl 98.3 1.5E-06 3.3E-11 71.2 7.2 57 21-147 1-60 (86)
92 PTZ00077 asparagine synthetase 98.2 5.6E-06 1.2E-10 91.3 11.4 112 18-148 237-362 (586)
93 PRK09431 asnB asparagine synth 98.2 7.8E-06 1.7E-10 89.7 11.9 112 18-148 227-354 (554)
94 TIGR02055 APS_reductase thiore 98.2 2.2E-05 4.9E-10 74.6 13.0 143 28-210 2-149 (191)
95 PLN02549 asparagine synthase ( 98.2 8.7E-06 1.9E-10 89.7 11.3 113 18-148 225-348 (578)
96 TIGR03104 trio_amidotrans aspa 98.0 3.5E-05 7.6E-10 85.3 12.5 115 18-148 260-376 (589)
97 TIGR00424 APS_reduc 5'-adenyly 98.0 7.9E-05 1.7E-09 79.8 14.0 160 19-210 116-280 (463)
98 TIGR03108 eps_aminotran_1 exos 98.0 3.6E-05 7.7E-10 85.8 11.6 112 18-148 258-370 (628)
99 PLN02309 5'-adenylylsulfate re 98.0 0.00012 2.6E-09 78.4 14.7 161 19-210 111-275 (457)
100 PF02677 DUF208: Uncharacteriz 98.0 3.1E-05 6.7E-10 72.4 9.0 111 21-143 1-112 (176)
101 COG0367 AsnB Asparagine syntha 98.0 4.4E-05 9.4E-10 83.7 11.2 113 18-148 230-345 (542)
102 KOG0571 Asparagine synthase (g 97.7 0.00019 4.2E-09 74.7 10.2 109 19-147 226-345 (543)
103 KOG2594 Uncharacterized conser 97.4 0.0017 3.8E-08 66.3 11.4 173 16-209 60-265 (396)
104 COG1636 Uncharacterized protei 97.2 0.0023 5E-08 60.2 9.2 115 18-144 3-119 (204)
105 KOG2316 Predicted ATPase (PP-l 95.8 0.049 1.1E-06 52.6 8.9 116 19-146 1-118 (277)
106 COG3969 Predicted phosphoadeno 95.7 0.011 2.3E-07 60.5 4.3 53 17-80 26-83 (407)
107 KOG0573 Asparagine synthase [A 93.2 0.13 2.7E-06 54.6 5.2 23 19-41 251-273 (520)
108 KOG0189 Phosphoadenosine phosp 92.6 1.4 2.9E-05 42.5 10.6 149 21-210 49-205 (261)
109 TIGR00269 conserved hypothetic 90.8 0.4 8.7E-06 41.1 4.7 52 185-241 2-57 (104)
110 cd01987 USP_OKCHK USP domain i 90.1 4.2 9.2E-05 34.6 10.6 92 20-146 1-96 (124)
111 KOG2303 Predicted NAD synthase 90.0 3.2 6.8E-05 44.9 11.2 91 20-113 351-467 (706)
112 cd03706 mtEFTU_III Domain III 86.3 3.2 6.8E-05 34.4 7.1 35 347-382 58-92 (93)
113 PTZ00327 eukaryotic translatio 86.2 4.4 9.6E-05 43.9 9.9 112 261-382 322-451 (460)
114 cd04094 selB_III This family r 85.8 2.3 4.9E-05 35.7 6.0 34 346-380 62-97 (97)
115 cd03707 EFTU_III Domain III of 84.4 3.2 6.8E-05 34.1 6.1 34 346-380 57-90 (90)
116 PRK10490 sensor protein KdpD; 84.1 7.8 0.00017 45.5 11.3 69 17-90 249-321 (895)
117 cd01988 Na_H_Antiporter_C The 83.6 16 0.00034 31.0 10.5 99 20-146 1-105 (132)
118 TIGR03680 eif2g_arch translati 80.9 7.2 0.00016 41.4 8.8 92 279-381 301-406 (406)
119 cd01989 STK_N The N-terminal d 80.3 21 0.00046 31.2 10.4 33 20-52 1-37 (146)
120 PRK13011 formyltetrahydrofolat 74.8 22 0.00048 36.1 9.8 87 16-147 87-177 (286)
121 COG0788 PurU Formyltetrahydrof 71.7 26 0.00055 35.3 9.0 86 16-147 88-178 (287)
122 COG2205 KdpD Osmosensitive K+ 71.6 34 0.00073 39.6 11.0 71 16-91 246-320 (890)
123 cd05565 PTS_IIB_lactose PTS_II 70.5 17 0.00036 31.0 6.6 72 20-91 2-81 (99)
124 PRK05647 purN phosphoribosylgl 70.4 30 0.00066 33.1 9.2 55 19-90 2-59 (200)
125 PRK10512 selenocysteinyl-tRNA- 70.3 22 0.00048 40.0 9.4 109 260-385 232-342 (614)
126 PTZ00372 endonuclease 4-like p 69.4 25 0.00055 37.6 9.1 105 23-145 137-243 (413)
127 PRK04148 hypothetical protein; 69.4 34 0.00074 30.9 8.6 78 35-142 32-109 (134)
128 cd00293 USP_Like Usp: Universa 67.7 67 0.0015 26.3 11.1 98 20-146 1-104 (130)
129 TIGR00853 pts-lac PTS system, 67.0 18 0.00039 30.4 6.1 74 18-91 3-84 (95)
130 TIGR00485 EF-Tu translation el 66.5 19 0.00042 37.9 7.6 35 348-383 358-392 (394)
131 PLN03126 Elongation factor Tu; 66.3 34 0.00073 37.3 9.5 113 260-383 349-476 (478)
132 PRK06027 purU formyltetrahydro 66.1 36 0.00078 34.5 9.2 86 17-147 88-177 (286)
133 PRK09590 celB cellobiose phosp 65.8 21 0.00046 30.6 6.4 73 19-91 2-84 (104)
134 TIGR00587 nfo apurinic endonuc 65.5 46 0.001 33.1 9.8 102 22-141 6-107 (274)
135 PRK04000 translation initiatio 64.9 47 0.001 35.3 10.2 54 322-381 354-411 (411)
136 PRK13010 purU formyltetrahydro 63.8 47 0.001 33.8 9.5 86 17-147 92-181 (289)
137 TIGR00655 PurU formyltetrahydr 63.4 56 0.0012 33.1 9.9 86 17-147 83-172 (280)
138 PLN03127 Elongation factor Tu; 63.2 27 0.00059 37.6 8.1 36 347-383 410-445 (447)
139 PRK09982 universal stress prot 61.6 80 0.0017 27.7 9.7 34 19-52 4-41 (142)
140 cd01523 RHOD_Lact_B Member of 61.2 14 0.00031 30.4 4.4 28 17-44 60-87 (100)
141 PRK05124 cysN sulfate adenylyl 58.3 61 0.0013 35.2 9.7 113 260-384 303-438 (474)
142 CHL00071 tufA elongation facto 57.4 43 0.00093 35.5 8.3 99 280-383 296-407 (409)
143 TIGR00639 PurN phosphoribosylg 56.9 63 0.0014 30.7 8.5 87 19-147 1-91 (190)
144 cd01513 Translation_factor_III 56.8 59 0.0013 26.7 7.5 33 347-380 64-102 (102)
145 PF03853 YjeF_N: YjeF-related 56.6 32 0.0007 31.8 6.3 63 16-89 23-88 (169)
146 PRK08305 spoVFB dipicolinate s 56.4 20 0.00044 34.4 5.0 33 17-49 4-40 (196)
147 PRK12736 elongation factor Tu; 54.8 47 0.001 35.1 8.0 37 347-384 357-393 (394)
148 PRK12735 elongation factor Tu; 54.6 38 0.00083 35.7 7.3 36 347-383 359-394 (396)
149 PRK02261 methylaspartate mutas 51.5 1.7E+02 0.0038 26.1 10.1 108 18-142 3-119 (137)
150 PLN02331 phosphoribosylglycina 49.5 1.2E+02 0.0026 29.3 9.2 87 20-147 1-90 (207)
151 COG0607 PspE Rhodanese-related 49.5 22 0.00048 29.3 3.7 30 17-46 60-89 (110)
152 PRK00049 elongation factor Tu; 49.0 62 0.0013 34.2 7.8 35 348-383 360-394 (396)
153 COG0299 PurN Folate-dependent 48.4 1.4E+02 0.0029 28.9 9.1 88 19-147 1-91 (200)
154 cd01518 RHOD_YceA Member of th 47.6 31 0.00068 28.4 4.3 29 16-44 59-87 (101)
155 cd03708 GTPBP_III Domain III o 46.9 92 0.002 25.0 7.0 35 346-382 51-86 (87)
156 PRK06849 hypothetical protein; 45.9 3.5E+02 0.0076 28.1 12.9 34 17-50 3-36 (389)
157 PF02441 Flavoprotein: Flavopr 44.9 24 0.00053 30.9 3.4 31 19-49 1-34 (129)
158 PRK08057 cobalt-precorrin-6x r 44.4 3.3E+02 0.0072 27.0 12.2 27 191-217 175-201 (248)
159 PRK10116 universal stress prot 44.2 1E+02 0.0022 26.7 7.3 34 18-51 3-40 (142)
160 PRK05920 aromatic acid decarbo 43.8 38 0.00083 32.7 4.8 33 17-49 2-37 (204)
161 smart00450 RHOD Rhodanese Homo 43.8 52 0.0011 25.9 5.0 29 16-44 54-82 (100)
162 cd01534 4RHOD_Repeat_3 Member 43.7 40 0.00087 27.4 4.4 28 17-44 55-82 (95)
163 cd01529 4RHOD_Repeats Member o 43.5 45 0.00097 27.2 4.6 28 17-44 55-82 (96)
164 cd05564 PTS_IIB_chitobiose_lic 43.3 60 0.0013 27.2 5.4 72 20-91 1-80 (96)
165 cd01444 GlpE_ST GlpE sulfurtra 42.7 34 0.00075 27.5 3.8 28 17-44 55-82 (96)
166 PRK05506 bifunctional sulfate 42.6 1.1E+02 0.0024 34.4 9.0 113 261-385 300-435 (632)
167 PRK15118 universal stress glob 42.5 2.3E+02 0.0049 24.5 10.0 34 18-51 3-40 (144)
168 PTZ00141 elongation factor 1- 41.9 1.1E+02 0.0024 33.0 8.5 42 348-390 389-436 (446)
169 cd01524 RHOD_Pyr_redox Member 41.2 52 0.0011 26.5 4.6 28 18-45 51-78 (90)
170 TIGR02981 phageshock_pspE phag 40.6 60 0.0013 27.4 5.0 30 17-46 57-86 (101)
171 cd01520 RHOD_YbbB Member of th 40.4 51 0.0011 28.7 4.7 30 16-45 84-114 (128)
172 PF02571 CbiJ: Precorrin-6x re 39.9 3.8E+02 0.0082 26.6 11.3 150 24-217 47-205 (249)
173 cd01533 4RHOD_Repeat_2 Member 39.4 55 0.0012 27.4 4.6 28 17-44 65-92 (109)
174 TIGR00475 selB selenocysteine- 38.9 72 0.0016 35.7 6.7 55 323-383 283-338 (581)
175 TIGR00483 EF-1_alpha translati 37.8 1.7E+02 0.0038 31.0 9.2 36 348-384 382-423 (426)
176 PF02844 GARS_N: Phosphoribosy 36.8 1.2E+02 0.0026 26.0 6.2 80 19-102 1-82 (100)
177 COG0541 Ffh Signal recognition 36.6 1.3E+02 0.0029 32.4 7.8 54 22-88 105-161 (451)
178 PF12683 DUF3798: Protein of u 36.4 2.6E+02 0.0056 28.3 9.4 51 34-91 122-172 (275)
179 smart00518 AP2Ec AP endonuclea 35.8 3.7E+02 0.008 26.2 10.6 98 23-141 6-103 (273)
180 COG0821 gcpE 1-hydroxy-2-methy 35.5 2.3E+02 0.005 29.6 9.0 98 28-146 34-133 (361)
181 PLN02828 formyltetrahydrofolat 35.4 96 0.0021 31.3 6.3 60 17-91 69-132 (268)
182 PRK10443 rihA ribonucleoside h 35.2 1.4E+02 0.003 30.6 7.6 59 19-87 3-65 (311)
183 cd02067 B12-binding B12 bindin 35.1 1.5E+02 0.0034 25.1 6.9 42 33-91 18-59 (119)
184 PRK11175 universal stress prot 34.6 4E+02 0.0088 26.2 10.8 22 125-146 251-272 (305)
185 PF10288 DUF2392: Protein of u 34.5 25 0.00055 30.1 1.8 26 184-209 32-57 (107)
186 PLN02717 uridine nucleosidase 34.4 1.3E+02 0.0029 30.7 7.4 59 19-87 1-63 (316)
187 PF02302 PTS_IIB: PTS system, 34.3 87 0.0019 25.1 4.9 32 20-51 1-37 (90)
188 PRK07313 phosphopantothenoylcy 34.1 60 0.0013 30.6 4.4 31 19-49 2-35 (182)
189 TIGR02113 coaC_strep phosphopa 33.8 58 0.0013 30.6 4.2 31 19-49 1-34 (177)
190 PF03143 GTP_EFTU_D3: Elongati 33.8 56 0.0012 27.4 3.7 35 348-383 64-98 (99)
191 COG1908 FrhD Coenzyme F420-red 33.4 3.1E+02 0.0067 24.5 8.2 66 19-89 30-98 (132)
192 PRK06029 3-octaprenyl-4-hydrox 33.3 60 0.0013 30.8 4.2 31 19-49 2-36 (185)
193 PF00582 Usp: Universal stress 33.2 89 0.0019 25.8 5.0 34 19-52 3-40 (140)
194 cd01519 RHOD_HSP67B2 Member of 33.2 66 0.0014 26.4 4.1 28 17-44 65-92 (106)
195 PRK12317 elongation factor 1-a 33.2 1.4E+02 0.003 31.8 7.5 37 348-385 380-422 (425)
196 cd01527 RHOD_YgaP Member of th 33.1 1.1E+02 0.0023 24.9 5.4 29 16-44 52-80 (99)
197 cd01447 Polysulfide_ST Polysul 32.8 59 0.0013 26.5 3.7 30 17-46 60-90 (103)
198 PRK08227 autoinducer 2 aldolas 32.4 2.6E+02 0.0056 28.2 8.8 94 17-141 73-177 (264)
199 PF00448 SRP54: SRP54-type pro 32.3 1.1E+02 0.0023 29.2 5.8 57 21-90 5-64 (196)
200 PRK08599 coproporphyrinogen II 31.9 4.1E+02 0.0088 27.6 10.7 99 34-146 141-240 (377)
201 PRK05320 rhodanese superfamily 31.8 66 0.0014 32.1 4.5 30 17-46 174-204 (257)
202 PF04273 DUF442: Putative phos 31.0 2.3E+02 0.0049 24.5 7.2 99 23-133 9-108 (110)
203 cd01521 RHOD_PspE2 Member of t 30.9 97 0.0021 26.0 4.8 29 17-45 63-93 (110)
204 PF10989 DUF2808: Protein of u 30.8 89 0.0019 28.3 4.8 22 345-369 87-108 (146)
205 cd01449 TST_Repeat_2 Thiosulfa 30.1 86 0.0019 26.3 4.4 28 17-44 77-104 (118)
206 cd02650 nuc_hydro_CaPnhB NH_hy 30.1 1.6E+02 0.0035 29.8 7.1 56 21-86 2-61 (304)
207 TIGR00421 ubiX_pad polyprenyl 29.6 72 0.0016 30.1 4.1 31 20-50 1-34 (181)
208 PRK09955 rihB ribonucleoside h 29.5 1.8E+02 0.0039 29.8 7.3 54 19-82 4-58 (313)
209 PRK00142 putative rhodanese-re 29.2 82 0.0018 32.4 4.8 29 16-44 169-197 (314)
210 cd02649 nuc_hydro_CeIAG nuc_hy 29.0 1.8E+02 0.0039 29.7 7.2 53 20-82 2-55 (306)
211 PRK14169 bifunctional 5,10-met 29.0 5.1E+02 0.011 26.4 10.3 139 39-225 25-166 (282)
212 cd02647 nuc_hydro_TvIAG nuc_hy 28.9 1.9E+02 0.0041 29.7 7.4 54 19-82 1-57 (312)
213 COG1957 URH1 Inosine-uridine n 28.7 2.1E+02 0.0046 29.5 7.6 56 18-83 2-58 (311)
214 COG0452 Dfp Phosphopantothenoy 28.7 78 0.0017 33.7 4.6 32 18-49 4-38 (392)
215 cd01522 RHOD_1 Member of the R 28.6 86 0.0019 26.8 4.2 28 17-44 63-90 (117)
216 cd00158 RHOD Rhodanese Homolog 28.5 1.2E+02 0.0026 23.4 4.8 29 16-44 48-76 (89)
217 cd01525 RHOD_Kc Member of the 28.1 1.1E+02 0.0023 25.1 4.6 27 18-44 65-91 (105)
218 PRK10287 thiosulfate:cyanide s 28.0 1.4E+02 0.003 25.4 5.2 30 17-46 59-88 (104)
219 PRK14194 bifunctional 5,10-met 27.6 6.9E+02 0.015 25.7 11.9 147 40-234 29-179 (301)
220 TIGR00521 coaBC_dfp phosphopan 27.6 86 0.0019 33.3 4.7 33 17-49 2-37 (390)
221 COG1440 CelA Phosphotransferas 27.6 2.9E+02 0.0062 23.9 6.9 72 19-91 2-82 (102)
222 cd01528 RHOD_2 Member of the R 27.5 1.2E+02 0.0026 24.8 4.7 28 17-44 57-84 (101)
223 KOG2666 UDP-glucose/GDP-mannos 27.5 4.7E+02 0.01 27.4 9.6 39 63-109 270-308 (481)
224 COG0552 FtsY Signal recognitio 27.4 2.8E+02 0.0061 29.0 8.2 80 23-141 145-227 (340)
225 COG1066 Sms Predicted ATP-depe 27.3 2.9E+02 0.0063 29.9 8.4 23 125-147 200-222 (456)
226 PRK10768 ribonucleoside hydrol 27.3 2E+02 0.0043 29.2 7.2 58 19-86 3-63 (304)
227 TIGR00715 precor6x_red precorr 26.8 6.4E+02 0.014 25.1 11.8 54 24-90 47-100 (256)
228 COG0469 PykF Pyruvate kinase [ 25.5 1.8E+02 0.004 31.8 6.7 66 17-91 5-71 (477)
229 PRK01415 hypothetical protein; 25.4 97 0.0021 30.9 4.3 29 16-44 169-197 (247)
230 PRK05579 bifunctional phosphop 25.2 1.1E+02 0.0023 32.7 4.9 34 16-49 4-40 (399)
231 PF03848 TehB: Tellurite resis 25.2 1.9E+02 0.004 27.7 6.1 51 18-88 31-82 (192)
232 PRK14166 bifunctional 5,10-met 24.8 7.5E+02 0.016 25.2 10.6 140 38-225 24-167 (282)
233 PRK05799 coproporphyrinogen II 24.6 7.5E+02 0.016 25.5 11.1 99 34-146 140-239 (374)
234 PRK14193 bifunctional 5,10-met 24.5 7.3E+02 0.016 25.3 10.5 138 39-224 27-167 (284)
235 PRK14170 bifunctional 5,10-met 24.1 7.7E+02 0.017 25.1 10.8 138 39-224 26-166 (284)
236 COG0560 SerB Phosphoserine pho 24.1 1.4E+02 0.003 28.8 5.1 84 34-146 85-171 (212)
237 TIGR02852 spore_dpaB dipicolin 23.8 1.2E+02 0.0025 29.0 4.4 33 19-51 1-37 (187)
238 COG1255 Uncharacterized protei 23.8 2.8E+02 0.0061 24.7 6.3 78 33-144 27-104 (129)
239 cd01526 RHOD_ThiF Member of th 23.6 1.1E+02 0.0025 26.1 4.0 27 17-43 71-97 (122)
240 PLN02160 thiosulfate sulfurtra 23.2 1E+02 0.0022 27.4 3.7 28 17-44 80-107 (136)
241 PRK01060 endonuclease IV; Prov 22.9 7.1E+02 0.015 24.2 11.4 103 21-141 6-108 (281)
242 PRK14190 bifunctional 5,10-met 22.9 7.8E+02 0.017 25.0 10.4 137 41-225 29-168 (284)
243 cd00019 AP2Ec AP endonuclease 22.8 7.2E+02 0.016 24.3 10.2 89 34-141 15-104 (279)
244 PF05005 Ocnus: Janus/Ocnus fa 22.8 73 0.0016 27.7 2.5 13 373-385 62-74 (108)
245 PRK14189 bifunctional 5,10-met 22.2 8.4E+02 0.018 24.8 12.5 147 41-235 29-179 (285)
246 cd01453 vWA_transcription_fact 22.2 4.8E+02 0.01 24.2 8.2 14 78-91 132-145 (183)
247 PF11684 DUF3280: Protein of u 22.0 2.8E+02 0.0061 25.1 6.3 46 84-146 46-91 (140)
248 TIGR01282 nifD nitrogenase mol 21.6 5.6E+02 0.012 27.8 9.6 37 14-51 331-367 (466)
249 PRK14168 bifunctional 5,10-met 21.3 8.1E+02 0.018 25.1 10.2 135 42-224 31-170 (297)
250 PF01156 IU_nuc_hydro: Inosine 21.0 2.9E+02 0.0062 27.8 6.9 61 19-89 2-67 (312)
251 PRK14180 bifunctional 5,10-met 20.9 8.8E+02 0.019 24.6 10.3 135 42-224 29-167 (282)
252 cd03705 EF1_alpha_III Domain I 20.9 2.9E+02 0.0064 22.8 5.9 32 348-380 67-104 (104)
253 PF00763 THF_DHG_CYH: Tetrahyd 20.7 2.2E+02 0.0049 24.6 5.3 46 38-92 23-68 (117)
254 cd01965 Nitrogenase_MoFe_beta_ 20.7 6.8E+02 0.015 26.5 10.0 35 16-52 297-332 (428)
255 PLN02428 lipoic acid synthase 20.6 4.8E+02 0.01 27.4 8.5 25 123-147 302-326 (349)
256 COG1832 Predicted CoA-binding 20.4 89 0.0019 28.4 2.7 31 21-51 20-52 (140)
257 PRK08064 cystathionine beta-ly 20.3 5.6E+02 0.012 26.8 9.1 99 22-145 72-178 (390)
258 KOG3467 Histone H4 [Chromatin 20.1 83 0.0018 26.2 2.2 40 190-234 27-67 (103)
259 cd06831 PLPDE_III_ODC_like_AZI 20.0 3.1E+02 0.0067 29.0 7.1 52 34-94 155-213 (394)
No 1
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=100.00 E-value=2.1e-102 Score=795.89 Aligned_cols=352 Identities=42% Similarity=0.709 Sum_probs=281.7
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
|||+|||||||||||||+||+++||+|+|+||.+|+.++... ..|++.+++++|+++|++|||||+++|++++||+.|
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~~~~~~~--~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~V 78 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQGYDVIGVTMRNWDEEDESG--KSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEV 78 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHCT-EEEEEEEE-SS-SSSHH---HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHT
T ss_pred CeEEEEccCCHHHHHHHHHHHhhcccceEEEEEEeccccccC--CCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 689999999999999999999999999999999997643221 358889999999999999999999999999999999
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHH-cCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS-MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSH 177 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~-~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~ 177 (474)
+++|+++|..|+|||||+.||+.|||++|+++|.+ +|+++|||||||++... +..+.+.|.++.|..|||||||+.
T Consensus 79 i~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~---~~~~~~~L~r~~D~~KDQSYfL~~ 155 (356)
T PF03054_consen 79 IEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD---EKNGRYRLLRGADPKKDQSYFLSR 155 (356)
T ss_dssp HHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE---S-TTEEEEEE-SSTTC--GGGGTT
T ss_pred HHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee---ccCCceEEEecCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999 99999999999998642 124567899999999999999999
Q ss_pred cChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccCCCcEEeccCCceeeeeccee
Q 042717 178 LSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFW 257 (474)
Q Consensus 178 L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~~G~ivd~~~g~~lG~H~G~~ 257 (474)
|++++|.+++|||++++|+|||++|+++||+.++++||||+||+++++|++||+++++..||+|+|.++|++||+|+|+|
T Consensus 156 l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~a~k~eSq~iCFi~~~~~~~fl~~~~~~~~G~ivd~~tG~vlG~H~G~~ 235 (356)
T PF03054_consen 156 LPQEQLSRLIFPLGELTKEEVREIAREAGLPVAEKKESQGICFIGDGDYREFLKRYLPEKPGPIVDIDTGKVLGEHKGIH 235 (356)
T ss_dssp --HHHHCCEE-TCCCS-HHHHHHHHHHCT-TTTT-----SSTTTCCCHHHHHHCTTS----EEEEETT-S-EEEEES-CC
T ss_pred cCHHHHHhhcCCCCCCCHHHHHHHHHhcCCcccCccccceEEEecCCcHHHhhhhccccccCcccccccceeeeeccCee
Confidence 99999999999999999999999999999999999999999999999999999999998999999975599999999999
Q ss_pred eEeecccccCCCC--CceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcc-cccceeeeeccCCCccce
Q 042717 258 FYTIGQRQGLRLP--GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE-EISRLQCKVRHGPGFYNC 334 (474)
Q Consensus 258 ~yTiGQR~Gl~i~--~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~-~~~~~~~kiR~~~~~~~c 334 (474)
+|||||||||+++ ++||||++||+++|+|+|+++.+.++|+++.+.+.++||+....+. .+.++.+|+||++++.+|
T Consensus 236 ~yTiGQRkGlgi~g~~~p~yV~~id~~~N~V~Vg~g~~~~~L~~~~~~~~~~~w~~~~~~~~~~~~~~vkiR~~~~~~~~ 315 (356)
T PF03054_consen 236 FYTIGQRKGLGIAGYGEPLYVVEIDPETNTVVVGPGYDHEDLFSREFTVEDFNWISPELPDGNPLECQVKIRYRQKPVPC 315 (356)
T ss_dssp C--TT-BTTTTTT-TSS-EEEEEEECCCTEEEEEESTT-GGGEEEEEEEECEEETT-S--SSCEEEEEEESSTTS--EEE
T ss_pred eEccCCCCCCCCCCCCCeEEEEEEecCCCEEEEeCCcChHHHccCEEEEEeeeeccccCcccCceEEEEEEccCCCCCCE
Confidence 9999999999999 6899999999999999999977677899999999999999864443 467899999999999999
Q ss_pred EEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEE
Q 042717 335 NLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380 (474)
Q Consensus 335 ~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I 380 (474)
+++.. +++.++|+|++||+||||||+||||++|+|||||+|
T Consensus 316 ~v~~~-----~~~~~~V~f~eP~~avaPGQ~aVfY~~d~vLGgG~I 356 (356)
T PF03054_consen 316 TVEPI-----GDGRLRVEFDEPQRAVAPGQSAVFYDGDRVLGGGII 356 (356)
T ss_dssp EEEE------SSS-EEEEEEEEEET--TTSEEEEEETTEEEEEEEE
T ss_pred EEEEe-----cCCeEEEEeCCCCCCCCCCcEEEEEECCEEEEEEEC
Confidence 99886 456899999999999999999999999999999998
No 2
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-93 Score=721.59 Aligned_cols=351 Identities=42% Similarity=0.712 Sum_probs=325.0
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
+.+||+|||||||||||+|+||++|||+|+|+||.+|+..+ .+.|++.+|+.+|+++|++|||||+++|+.++||+
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~----~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~ 77 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDG----GGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWN 77 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHHcCCeEEEEEEEeeccCC----CCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHH
Confidence 45799999999999999999999999999999999997421 24799999999999999999999999999999999
Q ss_pred hhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLS 176 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~ 176 (474)
.|+++|+++|..|+|||||+.||+.|||+.|+++|.++|||+||||||+++... .....|.++.|..|||||||+
T Consensus 78 ~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~-----~~~~~l~r~~D~~KDQsYfL~ 152 (356)
T COG0482 78 KVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQRED-----EGIELLLRGVDLNKDQSYFLY 152 (356)
T ss_pred HHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecC-----CcccccccCCCcccchhheec
Confidence 999999999999999999999999999999999999999999999999987532 124678899999999999999
Q ss_pred ccChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccCCCcEEeccCCceeeeecce
Q 042717 177 HLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGF 256 (474)
Q Consensus 177 ~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~~G~ivd~~~g~~lG~H~G~ 256 (474)
.+++++|.+++|||++++|.|||++|++.||+.+.+|+||++||+++++|++||.++++.+||.|++. +|+++|+|.|+
T Consensus 153 ~~~~~ql~~~lFPlG~l~K~evR~iA~~~gL~~a~KkdS~~ICFi~~~~~~~fl~~~~p~~~G~ii~~-~G~v~g~H~G~ 231 (356)
T COG0482 153 ALSQEQLERLLFPLGDLEKLEVRPIAAEKGLPTAKKKDSQGICFIGERKFKDFLGRYLPAKPGEIIDK-DGKVLGEHDGL 231 (356)
T ss_pred ccCHHHHhhccccCCCCCHHHHHHHHHHcCCCccCcccCCcceecCCCCHHHHHHhhCCCCCceEEec-CCcEeeecCCE
Confidence 99999999999999999999999999999999999999999999999999999999999889999995 89999999999
Q ss_pred eeEeecccccCCCCC---ceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeeccCCCccc
Q 042717 257 WFYTIGQRQGLRLPG---GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYN 333 (474)
Q Consensus 257 ~~yTiGQR~Gl~i~~---~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR~~~~~~~ 333 (474)
|+||||||+||+|++ +||||+++|+++|+|+|+++. .++.+.+.+.++||+.+.++..+.++.+|+||++++.+
T Consensus 232 ~~yTiGQR~Gl~I~~~~~~p~yVv~kd~~~n~~~V~~~~---~l~~~~l~~~~~~~~~~~~~~~~~~~~~k~R~~~~~~~ 308 (356)
T COG0482 232 MYYTIGQRKGLGIGGLKGEPWYVVGKDLKKNRLYVGQGE---ALLSVGLIAEDLNWLDDAPPEEPLECTAKVRYRQGDEP 308 (356)
T ss_pred EEEecccccccCcCCCCCCCEEEEEEecccCeEEEecch---hheeeeeeeecccccccccCCCCceEEEEEeccCCCCc
Confidence 999999999999985 799999999999999999975 57889999999999987556677889999999999999
Q ss_pred eEEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeee
Q 042717 334 CNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 383 (474)
Q Consensus 334 c~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~ 383 (474)
|.++... + ++..+.|.|++|++||||||++|||+||+|||||+|..+
T Consensus 309 ~~~~~~~--~-~~~~~~v~f~~~~~avtpGQ~~v~Y~~d~~lGgg~I~~~ 355 (356)
T COG0482 309 CKVKVLS--D-EDVELAVKFDEPQRAVTPGQAAVLYDGDICLGGGIIDTS 355 (356)
T ss_pred eeEEEcc--C-CcceEEEEecCccccccCCcEEEEecCCEEEeeEEeecc
Confidence 9988762 1 234567999999999999999999999999999999864
No 3
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-91 Score=679.82 Aligned_cols=365 Identities=51% Similarity=0.931 Sum_probs=334.9
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
+..+|+|||||||||+|+|+||+++||+|+||+|.+|+. .+.+++.|+.+.|+++|+++|++|+||++.+++.+|||+
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~~~g~~v~gv~M~nWd~--~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~ 81 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLAARGYNVTGVFMKNWDS--LDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWN 81 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHHhcCCCeeEEeeecccc--ccccccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHH
Confidence 467999999999999999999999999999999999964 344557899999999999999999999999999999999
Q ss_pred hhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHH-HcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS-SMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFL 175 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~-~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL 175 (474)
.|+.+|+++|..|+||||++.||+.|||+.|.++|. ++|+|+|||||||+.+.++.+ .....|....|..|||+|||
T Consensus 82 ~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~--~~~~~l~~~~d~~KDQt~FL 159 (377)
T KOG2805|consen 82 DVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDED--NAESHLLISKDMVKDQTYFL 159 (377)
T ss_pred HHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCccc--CcceeEeecccccCCceeEe
Confidence 999999999999999999999999999997777665 679999999999998766544 23456778899999999999
Q ss_pred cccChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccc-hHHHHHhhhccCCCcEEeccCCceeeeec
Q 042717 176 SHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIK-FSEFVARHIGEMEGVILEAETGDFLGKHW 254 (474)
Q Consensus 176 ~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~-~~~fL~~~~~~~~G~ivd~~~g~~lG~H~ 254 (474)
+.+++.+|.+++|||+.++|+||+++|++.|+|.++||+||||||+++.. |++||.+|+++.||+|++++.|.++|.|.
T Consensus 160 ~~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~~aeK~eSqGICFvgk~~~F~dFl~~yi~~~~g~Il~i~~gs~vg~h~ 239 (377)
T KOG2805|consen 160 STINQTQLKRLLFPLGCLTKSEVKKLAKQAGFPNAEKPESQGICFVGKIKHFSDFLQRYIGSSPGPILEIDSGSVVGNHR 239 (377)
T ss_pred ecccHHHHHhhhccCcccCHHHHHHHHHhcCCccccCcccceeEEeccchhHHHHHHHhcCCCCCCeEEecCCccccccc
Confidence 99999999999999999999999999999999999999999999999887 99999999999999999988999999999
Q ss_pred ceeeEeeccccc----CCCCCceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcc-cccceeeee--cc
Q 042717 255 GFWFYTIGQRQG----LRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPE-EISRLQCKV--RH 327 (474)
Q Consensus 255 G~~~yTiGQR~G----l~i~~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~-~~~~~~~ki--R~ 327 (474)
|+|.||||||.| +...++||||.+||.++|+|||++++++++|+++.+.+++++|+.+.++. +.-.+.|++ ||
T Consensus 240 G~h~~TIGqR~g~sqa~~~~~g~wfV~~k~~~~n~i~i~rg~~~p~l~s~~~~i~~~kw~~~k~~~i~t~~l~c~~R~qh 319 (377)
T KOG2805|consen 240 GIHSYTIGQRCGISQALSLYGGPWFVSEKDTKNNVIYICRGYNNPDLYSRIFRIGSPKWLGTKPQGIKTGALRCKVRSQH 319 (377)
T ss_pred ceEEEEechhcCchhhhhccCCceEEEEeecCCCeEEEEcCCCCHHHhhceEEecChhhcCcCcCcCcccceEEEEEecc
Confidence 999999999999 55567999999999999999999999999999999999999999887665 334456655 58
Q ss_pred CCCccceEEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeeecccCCCC
Q 042717 328 GPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWDDQGFP 390 (474)
Q Consensus 328 ~~~~~~c~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~~~~~~~~ 390 (474)
.+++.+|.++.. +++.+.|+|++++||+||||++|||+++.|||||.|..++++..||
T Consensus 320 ~~p~~~c~~~~~-----~~~~~~Ihl~~~~RaitpGQ~~~fY~~~~cLGsG~I~~v~~~~~~~ 377 (377)
T KOG2805|consen 320 TPPLYSCKLEMS-----GDNLAVIHLDAKQRAITPGQFCAFYEDDTCLGSGVILEVNPDKCFP 377 (377)
T ss_pred CCCCccceEEec-----CCCcEEEEccchhcccCCCcEEEEEeCCeEeccceeeecCccccCC
Confidence 899999999987 4567899999999999999999999999999999999999998886
No 4
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=100.00 E-value=1.2e-87 Score=691.00 Aligned_cols=341 Identities=29% Similarity=0.469 Sum_probs=310.4
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
+++||+||||||+||+++|++|+++|++|+++||++|... .+.+++++|+++|++|||||+++|++++|+.
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~~---------~~~~d~~~a~~va~~LgIp~~vvd~~~~f~~ 74 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFN---------GSTEYLEDARALAERLGIGHITYDARKVFRK 74 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCCC---------CChHHHHHHHHHHHHhCCCEEEEecHHHHHH
Confidence 4579999999999999999999999999999999987431 2457899999999999999999999999999
Q ss_pred hhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLS 176 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~ 176 (474)
.++++|+++|..|+|||||+.||+.+||++|.++|+++|+++||||||+++.. ....+.|.++.|..|||||||+
T Consensus 75 ~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~-----~~~~~~l~~g~D~~kDQSyfL~ 149 (360)
T PRK14665 75 QIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQW-----IDGNYYITPAEDVDKDQSFFLW 149 (360)
T ss_pred HHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceec-----cCCcEEEEeecCCCCCceEEec
Confidence 99999999999999999999999999999999999999999999999998532 1234568889999999999999
Q ss_pred ccChhhhccccccccCCCHHHHHHHHHHcCC-CCcCCCCCcccccccccchHHHHHhhhcc-------------CCCcEE
Q 042717 177 HLSQAQLKRLIFPLGCISKEEVRKFATQFDL-PNKDRKDSQGICFLGKIKFSEFVARHIGE-------------MEGVIL 242 (474)
Q Consensus 177 ~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GL-p~~~k~~S~diCFl~~~~~~~fL~~~~~~-------------~~G~iv 242 (474)
.+++++|.+++|||++++|+|||++|+++|+ +.++++||||+||++ .+|++||+++++. +||+|+
T Consensus 150 ~l~~~~l~~~ifPLg~~~K~eVr~~A~~~gl~~~a~k~eSq~iCF~~-~~~~~fl~~~~~~~~~~~~~~~~~~~~~G~iv 228 (360)
T PRK14665 150 GLRQEILQRMLLPMGGMTKSEARAYAAERGFEKVAKKRDSLGVCFCP-MDYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228 (360)
T ss_pred CCCHHHHhheeccCcCCCHHHHHHHHHHCCCCccCcCCCCCccccCC-chHHHHHHHhcccccccccccccccCCCccEE
Confidence 9999999999999999999999999999998 578999999999997 6899999999863 589999
Q ss_pred eccCCceeeeecceeeEeecccccCCCC-CceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccce
Q 042717 243 EAETGDFLGKHWGFWFYTIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRL 321 (474)
Q Consensus 243 d~~~g~~lG~H~G~~~yTiGQR~Gl~i~-~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~ 321 (474)
| .+|++||+|+|+|+|||||||||+++ ++||||++||+++|+|+|++. ++|+.+++.+.++||+...++....++
T Consensus 229 ~-~~g~~lG~H~G~~~yTiGQRkgl~i~~~~p~yV~~~d~~~n~v~v~~~---~~l~~~~~~~~~~~w~~~~~~~~~~~~ 304 (360)
T PRK14665 229 D-ESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASL---KALEKTEMWLKDWNIVNESRLLGCDDI 304 (360)
T ss_pred c-CCCCEeEEECCEEeeecCCcccCCCCCCCceEEEEEcCCCCEEEEECh---HHhcCCEEEEEeceEcCCCCCCCCeEE
Confidence 9 58999999999999999999999998 579999999999999999974 467899999999999864444445679
Q ss_pred eeeeccCCCccceEEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEe
Q 042717 322 QCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381 (474)
Q Consensus 322 ~~kiR~~~~~~~c~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~ 381 (474)
.+|+||++++.+|+++.. +++.++|+|++|++||||||+||||+||+|||||+|.
T Consensus 305 ~~k~R~~~~~~~~~~~~~-----~~~~~~v~f~~p~~av~pGQ~~v~Y~~~~vlGgg~I~ 359 (360)
T PRK14665 305 IVKIRYRKQENHCTVTIT-----PDNLLHVQLHEPLTAIAEGQAAAFYKDGLLLGGGIIT 359 (360)
T ss_pred EEEEecCCCCcCEEEEEc-----cCCEEEEEeCCCCcccCCCcEEEEEECCEEEEEEEEc
Confidence 999999999999999765 3557899999999999999999999999999999995
No 5
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=100.00 E-value=4.6e-87 Score=686.37 Aligned_cols=348 Identities=42% Similarity=0.750 Sum_probs=315.8
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
+||+||||||+||+++|++|+++|++|+++||++|..+.... ...|++.+++++|+++|++||||++++|++++|++++
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~-~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v 79 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKND-GHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKV 79 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHcCCeEEEEEEEccccccccc-ccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHH
Confidence 489999999999999999999999999999999886432111 1357788899999999999999999999999999999
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHc-CCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSM-EFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSH 177 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~-Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~ 177 (474)
+++++++|..|+|||||+.||+.+||+.|.++|++. |+++||||||+++.. + ...+.|.++.|..|||+|||+.
T Consensus 80 ~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~----d-~~~~~l~~~~d~~kDqsy~L~~ 154 (352)
T TIGR00420 80 FEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAE----I-EGKSLLLRALDKNKDQSYFLYH 154 (352)
T ss_pred HHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeC----C-CCcEEEEEccCCCcCcceeccc
Confidence 999999999999999999999999999999999986 999999999997531 2 2334578899999999999999
Q ss_pred cChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccCCCcEEeccCCc-eeeeecce
Q 042717 178 LSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGD-FLGKHWGF 256 (474)
Q Consensus 178 L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~~G~ivd~~~g~-~lG~H~G~ 256 (474)
++++++.+++|||++++|+||+++|+++||+++++|+||++||+++++|++||+++++..||.|++ .+|+ +||+|+|+
T Consensus 155 l~~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~k~~Sq~iCFi~~~~~~~fl~~~~~~~~g~iv~-~~g~~~~g~H~G~ 233 (352)
T TIGR00420 155 LSHEQLAKLLFPLGELLKPEVRQIAKNAGLPTAEKKDSQGICFIGERKFRDFLKKYLPVKPGVIIT-VDGQSVIGEHDGL 233 (352)
T ss_pred CCHHHhhhhcccCCCCCHHHHHHHHHHcCCCCCCCCCCCCeEEecCCCHHHHHHHhCCCCCCcEEe-CCCCEeeEEECCE
Confidence 999999999999999999999999999999999999999999999999999999998888999999 4898 99999999
Q ss_pred eeEeecccccCCCC--CceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeeccCCCccce
Q 042717 257 WFYTIGQRQGLRLP--GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNC 334 (474)
Q Consensus 257 ~~yTiGQR~Gl~i~--~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR~~~~~~~c 334 (474)
|+|||||||||+++ ++||||+++|+++|+|+|+++ .++|+++.+.+.++||+...++..+.++.+|+||++++.+|
T Consensus 234 ~~yTiGQr~gl~i~~~~~p~yV~~~d~~~n~v~v~~~--~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~k~R~~~~~~~~ 311 (352)
T TIGR00420 234 WFYTIGQRKGLGIGGAAEPWFVVEKDLETNELIVSHG--KPDLASRGLLAQQFHWLDDEPNPFEMRCTVKIRYRQVPVQC 311 (352)
T ss_pred EeEecCCcCCCCCCCCCCceEEEEEcCCCCEEEEeCC--cHHHccCEEEEEeeEECCCCCCCCCeEEEEEEccCCCCcCE
Confidence 99999999999998 489999999999999999984 25788999999999999644433446899999999999999
Q ss_pred EEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEE
Q 042717 335 NLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380 (474)
Q Consensus 335 ~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I 380 (474)
+++.. +++.++|+|++|++||||||+||||+||+|||||+|
T Consensus 312 ~~~~~-----~~~~~~v~f~~p~~~v~pGQ~~v~Y~~~~~lggg~I 352 (352)
T TIGR00420 312 KLKLL-----DDNLIEVIFDEPQAGVTPGQSAVLYKGDICLGGGII 352 (352)
T ss_pred EEEEe-----cCCEEEEEeCCCCcccCCCcEEEEEECCEEEEeEEC
Confidence 99765 356799999999999999999999999999999998
No 6
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=100.00 E-value=3.9e-87 Score=686.00 Aligned_cols=337 Identities=27% Similarity=0.478 Sum_probs=306.8
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
+++||+||||||+||+++|++|+++|++|+++||++|. ++.++|+++|++|||||+++|++++|+.
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~~G~eV~av~~~~~~--------------~e~~~a~~va~~LGI~~~vvd~~~~f~~ 69 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWG--------------DEPQDARELAARMGIEHYVADERVPFKD 69 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHcCCcEEEEEecCcc--------------hhHHHHHHHHHHhCCCEEEEeChHHHHH
Confidence 45799999999999999999999999999999998752 2356799999999999999999999999
Q ss_pred hhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLS 176 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~ 176 (474)
.++++++++|..|+|||||+.||+.+||++|.++|+++|+++||||||+++.. ....+.|.++.|..|||||||+
T Consensus 70 ~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~-----~~~~~~l~~g~D~~kDQsyfl~ 144 (362)
T PRK14664 70 TIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEE-----RNGHIYIVAGDDDKKDQSYFLW 144 (362)
T ss_pred HHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccccc-----CCCeEEEEEcCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999998642 1234567889999999999999
Q ss_pred ccChhhhccccccccCCCHHHHHHHHHHcCCCC-cCCCCCcccccccccchHHHHHhhhc-----cCCCcEEeccCCcee
Q 042717 177 HLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN-KDRKDSQGICFLGKIKFSEFVARHIG-----EMEGVILEAETGDFL 250 (474)
Q Consensus 177 ~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~-~~k~~S~diCFl~~~~~~~fL~~~~~-----~~~G~ivd~~~g~~l 250 (474)
.|++++|.+++|||++++|+|||++|+++||+. ++++||||+||++ ++|++||+++++ ..||+|+| .+|++|
T Consensus 145 ~l~~~~l~~~ifPLg~~~K~evr~~A~~~gl~~~a~k~dSq~iCFi~-~~~~~fl~~~~~~~~~~~~~G~iv~-~~G~~~ 222 (362)
T PRK14664 145 RLGQDILRRCIFPLGNYTKQTVREYLREKGYEAKSKEGESMEVCFIK-GDYRDFLREQCPELDTEVGPGWFVN-SEGVKL 222 (362)
T ss_pred hcCHHHHhHHhccCccCCHHHHHHHHHHcCCCCCCCCCCCCcceeec-CcHHHHHHHhcccccCcCCCEeEEe-CCCCEE
Confidence 999999999999999999999999999999998 8999999999996 699999999986 37899999 589999
Q ss_pred eeecceeeEeecccccCCCC-CceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeeccCC
Q 042717 251 GKHWGFWFYTIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGP 329 (474)
Q Consensus 251 G~H~G~~~yTiGQR~Gl~i~-~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR~~~ 329 (474)
|+|+|+|+|||||||||+++ ++||||+++|+++|+|+|++.. +++.+++.+.++||+...++....++.+|+||++
T Consensus 223 G~H~G~~~yTiGQRkglgi~~~~p~yV~~~d~~~n~v~v~~~~---~l~~~~~~~~~~~w~~~~~~~~~~~~~~k~R~~~ 299 (362)
T PRK14664 223 GQHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAE---QLKAEYMLAEQDNIVDEQELFACPDLAVRIRYRS 299 (362)
T ss_pred EEECCEEEEecCCccCCCCCCCCceEEEEEcCCCCEEEEeChh---HhcCCEEEEeccEecCCCCCCCCceEEEEEccCC
Confidence 99999999999999999998 5899999999999999999863 5678999999999986444433357899999999
Q ss_pred CccceEEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEee
Q 042717 330 GFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILE 382 (474)
Q Consensus 330 ~~~~c~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~ 382 (474)
++++|+++.. +++.++|+|++|++||||||+||||+||+|||||+|.+
T Consensus 300 ~~~~~~v~~~-----~~~~~~v~f~~p~~avapGQ~~v~Y~~~~vlGgG~I~~ 347 (362)
T PRK14664 300 RPIPCRVKRL-----EDGRLLVRFLAEASAIAPGQSAVFYEGRRVLGGAFIAS 347 (362)
T ss_pred CCcCEEEEEe-----cCCeEEEEeCCCCcCcCCCcEEEEEECCEEEEEEEEcc
Confidence 9999999865 35679999999999999999999999999999999964
No 7
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=100.00 E-value=2.6e-86 Score=680.18 Aligned_cols=344 Identities=40% Similarity=0.707 Sum_probs=315.6
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
+||+||||||+||+++|++|+++|++|+++||++|...+.. ..+.|++.++.++|+++|++||||++++|++++|+..+
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~G~~V~~v~~~~~~~~~~~-~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~v 79 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQGYEVIGVFMKLWDDDDET-GKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRV 79 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHcCCcEEEEEEeCCCccccc-ccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHH
Confidence 48999999999999999999999999999999998542110 01357788999999999999999999999999999999
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHL 178 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L 178 (474)
+++++++|..|+|||||+.||+.+||++|.++|+++|+++||||||+++ ..++ .|.++.|..|||+|||+.+
T Consensus 80 i~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d-------~~~~-~L~rg~d~~kDqsy~l~~l 151 (346)
T PRK00143 80 IDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARI-------RDGR-ELLRGVDPNKDQSYFLYQL 151 (346)
T ss_pred HHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccc-------cccc-eEEEccCCCcChhhhhccC
Confidence 9999999999999999999999999999999999999999999999985 2345 6888899999999999999
Q ss_pred ChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccCCCcEEeccCCceeeeecceee
Q 042717 179 SQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWF 258 (474)
Q Consensus 179 ~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~~G~ivd~~~g~~lG~H~G~~~ 258 (474)
+++.+.+++|||++++|+|||++|+++|||++++|+|||+||+++.+|++||.++++..||.+++ .+|++||+|+|+|+
T Consensus 152 ~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~icf~~~~~~~~fl~~~~~~~pG~~~~-~~g~~~g~H~G~~~ 230 (346)
T PRK00143 152 TQEQLAKLLFPLGELTKPEVREIAEEAGLPVAKKKDSQGICFIGERDYRDFLKRYLPAQPGEIVD-LDGKVLGEHKGLMY 230 (346)
T ss_pred CHHHhcceeccCccCCHHHHHHHHHHcCCCcCCCCCCCcccCCCchhHHHHHHHhcccCCCCEEc-cCCCEEEEECCEEe
Confidence 99899899999999999999999999999999999999999999999999999999888999999 48999999999999
Q ss_pred EeecccccCCCC--CceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeeccCCCccceEE
Q 042717 259 YTIGQRQGLRLP--GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNL 336 (474)
Q Consensus 259 yTiGQR~Gl~i~--~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR~~~~~~~c~v 336 (474)
|||||||||+++ ++||||+++|+++|+|+|+++ ++|+++.+.+.++||+...++..+.++.+|+||++++.+|++
T Consensus 231 yTiGQr~gl~~~~~~~p~yV~~~d~~~n~v~v~~~---~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~R~~~~~~~~~~ 307 (346)
T PRK00143 231 YTIGQRKGLGIGGDGEPWYVVGKDPETNTVVVGQG---EALYSRELIASDLNWVGGEPPEEPFECTAKIRYRQKPVPATV 307 (346)
T ss_pred EecCCcCCCCCCCCCcceEEEEEcCCCCEEEEECh---hHhcccEEEEEeeeecCCCCCCCCEEEEEEEccCCCCcCEEE
Confidence 999999999998 479999999999999999987 467899999999999975544455789999999999999999
Q ss_pred EEeeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEe
Q 042717 337 MIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381 (474)
Q Consensus 337 ~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~ 381 (474)
+ . +++.++|+|++|++||||||+||||+||+|||||+|.
T Consensus 308 ~-~-----~~~~~~v~~~~p~~~v~pGQ~~v~Y~~~~~lggg~I~ 346 (346)
T PRK00143 308 E-L-----EDDRVEVEFDEPQRAVTPGQAAVFYDGDRVLGGGIIE 346 (346)
T ss_pred E-E-----cCCEEEEEeCCCccccCCCcEEEEEECCEEEEEEEEC
Confidence 7 3 3567999999999999999999999999999999994
No 8
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=100.00 E-value=2.2e-86 Score=681.70 Aligned_cols=348 Identities=43% Similarity=0.733 Sum_probs=318.1
Q ss_pred eEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVV 99 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~ 99 (474)
||+||||||+||+++|++|+++|++|+++||++|.... . .+.|++.+++++|+++|+.||||++++|++++|+..++
T Consensus 1 kVlValSGGvDSsvla~lL~~~g~~v~~v~i~~~~~~~-~--~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~ 77 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDEDD-G--KGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVF 77 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCcEEEEEEecccccc-c--ccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHH
Confidence 68999999999999999999999999999999885321 1 13577789999999999999999999999999999999
Q ss_pred hhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccC
Q 042717 100 SYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLS 179 (474)
Q Consensus 100 ~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~ 179 (474)
++++++|..|+|||||+.||+.+||+.|.++|+++|+++||||||+++... ....+.|.++.|..|||+|||+.++
T Consensus 78 ~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~~----~~~~~~l~rg~d~~kdqsy~L~~~~ 153 (349)
T cd01998 78 EPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEED----NNGRYRLLRGVDPNKDQSYFLSQLS 153 (349)
T ss_pred HHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeeec----CCCceEEeecCCCCCCcceEeccCC
Confidence 999999999999999999999999999999999999999999999986321 1123457788899999999999999
Q ss_pred hhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccCCCcEEeccCCceeeeecceeeE
Q 042717 180 QAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGVILEAETGDFLGKHWGFWFY 259 (474)
Q Consensus 180 ~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~~G~ivd~~~g~~lG~H~G~~~y 259 (474)
++.+.+++|||++++|+|||++|+++|||++++|+|||+||+++++|++||+++++..||+|+| .+|+++|+|+|+|+|
T Consensus 154 ~~~l~~ii~PL~~~~K~eVr~~A~~~gl~~~~k~~s~~iCFi~~~~~~~fl~~~~~~~~G~i~~-~~g~~~g~H~G~~~y 232 (349)
T cd01998 154 QEQLSRLIFPLGDLTKPEVREIAKELGLPVAKKKDSQGICFIGERNFRDFLKEYLPEKPGEIVD-IDGKVLGEHKGLWFY 232 (349)
T ss_pred HHHHhheeecCCCCCHHHHHHHHHHcCCCCCCCCCCCceEEecCCCHHHHHHHhcCCCCCCEEC-CCCCEeeEECCEeeE
Confidence 9888999999999999999999999999999999999999999999999999999888999999 479999999999999
Q ss_pred eecccccCCCC-CceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeeccCCCccceEEEE
Q 042717 260 TIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMI 338 (474)
Q Consensus 260 TiGQR~Gl~i~-~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR~~~~~~~c~v~~ 338 (474)
||||||||+++ ++||||+++|+++|+|+|+++.+.++|+++.+.+.++||+...++..+.++.+|+||++.+.+|+++.
T Consensus 233 TiGQr~gl~~~~~~p~yV~~~d~~~n~v~v~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 312 (349)
T cd01998 233 TIGQRKGLGIASGEPWYVVEKDPETNIVVVGPGSDHEALYSDGLIAKDFNWIGDPPPLEPLECEVKIRYRQPPVPCTIEP 312 (349)
T ss_pred ecCCcccCCCCCCCcEEEEEEcCCCCEEEEECCCCChhHhcCEEEEEccEECCCCCCCCCEEEEEEEccCCCCcCEEEEE
Confidence 99999999997 68999999999999999999766678999999999999997655555578999999999999999986
Q ss_pred eeeecCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEE
Q 042717 339 EHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380 (474)
Q Consensus 339 ~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I 380 (474)
. +++.++|+|++|++||||||+||||+||+|||||+|
T Consensus 313 ~-----~~~~~~v~~~~p~~~v~pGQ~~v~Y~~~~~lggg~I 349 (349)
T cd01998 313 L-----DDGRLEVIFDEPQRAVAPGQAAVFYDGDRVLGGGII 349 (349)
T ss_pred e-----CCCeEEEEeCCCCcccCCCCEEEEEECCEEEeeEEC
Confidence 5 355799999999999999999999999999999998
No 9
>PRK00509 argininosuccinate synthase; Provisional
Probab=99.95 E-value=2.4e-27 Score=246.07 Aligned_cols=169 Identities=23% Similarity=0.278 Sum_probs=144.9
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEEEEcchHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEVVHLTDEYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~vvd~~~~f~ 95 (474)
.+||+||+|||+||++++++|+++ |++|+++|+++++ ..|++.|+++|+++|+ +++++|++++|.
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq-------------~~dle~a~~~A~~lGi~~~~viD~~~ef~ 68 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQ-------------GEELEPIREKALKSGASEIYVEDLREEFV 68 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCC-------------HHHHHHHHHHHHHcCCCeEEEEcCHHHHH
Confidence 368999999999999999999998 9999999999863 2679999999999998 688889999999
Q ss_pred HhhHhhhHHHH--hcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccc
Q 042717 96 KNVVSYIIEEY--RCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTY 173 (474)
Q Consensus 96 ~~V~~~~i~~y--~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsy 173 (474)
++++.+++..+ -.|++||||..||..+ |..|.++|++.|+++||+||++. ++||.+
T Consensus 69 ~~~i~~~i~~n~~y~g~ypl~~~lcr~~i-~~~l~~~A~~~G~~~IA~G~t~k---------------------GnDq~r 126 (399)
T PRK00509 69 RDYVFPAIRANALYEGKYPLGTALARPLI-AKKLVEIARKEGADAVAHGCTGK---------------------GNDQVR 126 (399)
T ss_pred HHhHHHHHHhChHhcCcCCCchHHHHHHH-HHHHHHHHHHcCCCEEEeCCCcC---------------------CCCHHH
Confidence 99999988873 4689999999999988 99999999999999999999974 256777
Q ss_pred c---ccccChhhhccccccccCC---CHHHHHHHHHHcCCCCcC---CCCCcccccccc
Q 042717 174 F---LSHLSQAQLKRLIFPLGCI---SKEEVRKFATQFDLPNKD---RKDSQGICFLGK 223 (474)
Q Consensus 174 f---L~~L~~~~L~~~i~PL~~l---tK~EVr~lA~~~GLp~~~---k~~S~diCFl~~ 223 (474)
| +..+.++. .+++||.++ +|+|+++||+++|||... +|-|.|...++.
T Consensus 127 f~~g~~al~pel--~VisPlre~~~~tK~eir~~A~~~Gipv~~~~~~~yS~d~Nlw~~ 183 (399)
T PRK00509 127 FELGIAALAPDL--KVIAPWREWDLKSREELIAYAEEHGIPIPVTKKSPYSIDANLWHR 183 (399)
T ss_pred HHHHHHHhCCCC--eeecchhhcCCCCHHHHHHHHHHcCCCCCCCCCCCCccccccccc
Confidence 7 55555443 799999987 999999999999999853 356777666653
No 10
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=99.93 E-value=1.4e-25 Score=232.31 Aligned_cols=173 Identities=21% Similarity=0.224 Sum_probs=137.3
Q ss_pred CCCCCCCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC-------CC
Q 042717 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD-------VP 84 (474)
Q Consensus 12 ~~~~~~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG-------Ip 84 (474)
++|.....||++++|||+||+||+++|+++|++|.++||+++ +.+.+.++++|+.|+ ++
T Consensus 174 GLPvGs~gkvlvllSGGiDSpVAa~ll~krG~~V~~v~f~~g--------------~~~~e~v~~la~~L~~~~~~~~i~ 239 (381)
T PRK08384 174 GLPIGTQGKVVALLSGGIDSPVAAFLMMKRGVEVIPVHIYMG--------------EKTLEKVRKIWNQLKKYHYGGKAE 239 (381)
T ss_pred CCccCCCCcEEEEEeCChHHHHHHHHHHHcCCeEEEEEEEeC--------------HHHHHHHHHHHHHhcccccCCcce
Confidence 678889999999999999999999999999999999999864 356889999999999 44
Q ss_pred EEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhh
Q 042717 85 LEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELS 164 (474)
Q Consensus 85 l~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~ 164 (474)
++++++ .|...+...+.+.+..+ .+|+.|++.+ |+.+.++|++.|+++|+|||++++.. ...+.+
T Consensus 240 l~~v~~--~~~~~v~~~i~~~~~~~---~~C~~Ckr~m-~r~a~~iA~~~g~~~IaTGhslgqva-------SQtl~N-- 304 (381)
T PRK08384 240 LIVVKP--QERERIIQKLKELKKEN---YTCVFCKFMM-VKHADRIAKEFGAKGIVMGDSLGQVA-------SQTLEN-- 304 (381)
T ss_pred EEEECh--HHHHHHHHHHHHhccCC---CchHHHHHHH-HHHHHHHHHHcCCCEEEEcccchhHH-------HHHHHH--
Confidence 666655 44555666666666544 5799999965 89999999999999999999998531 111212
Q ss_pred cCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcC-CCCcCCCCCccccccccc
Q 042717 165 KDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFD-LPNKDRKDSQGICFLGKI 224 (474)
Q Consensus 165 ~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~G-Lp~~~k~~S~diCFl~~~ 224 (474)
|..+.+.....++|||+.++|+||+++|++.| ++....|+ +++||+++.
T Consensus 305 ----------l~~i~~~~~lpilRPLi~~dK~EIi~~Ar~iGT~~~s~~~~-~dc~f~pk~ 354 (381)
T PRK08384 305 ----------MYIVSQASDLPIYRPLIGMDKEEIVAIAKTIGTFELSTLPE-DEIPFIPKH 354 (381)
T ss_pred ----------HHHHhccCCCcEEeeCCCCCHHHHHHHHHHcCCcccccCCC-CceEEeCCC
Confidence 12222222236999999999999999999999 77777787 899999753
No 11
>PRK04527 argininosuccinate synthase; Provisional
Probab=99.93 E-value=1.3e-25 Score=232.49 Aligned_cols=171 Identities=15% Similarity=0.183 Sum_probs=138.3
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEEEEcchHHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEVVHLTDEYWK 96 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~vvd~~~~f~~ 96 (474)
.+||+||||||+||+++|++|+++|++|++++++++.. +.+|++.|+++|+.+|+ +|+++|++++|++
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~G~~Viavt~d~gq~-----------~~~El~~a~~~A~~lG~~~~~viD~~eef~e 70 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGGV-----------DAEERDFIEKRAAELGAASHVTVDGGPAIWE 70 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHcCCcEEEEEEEeCCC-----------CHHHHHHHHHHHHHcCCCeEEEecCHHHHHH
Confidence 46899999999999999999999999999999998742 25789999999999999 6999999999999
Q ss_pred hhHhhhHH--HHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccc
Q 042717 97 NVVSYIIE--EYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYF 174 (474)
Q Consensus 97 ~V~~~~i~--~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyf 174 (474)
+++.+++. .|..|+||||| |||.++|+.|.++|++.|+++||||++.. +.||..|
T Consensus 71 ~vi~p~i~aNa~y~G~yPl~~--~nR~~~~~~l~e~A~~~G~~~IA~G~tgk---------------------gnDq~rf 127 (400)
T PRK04527 71 GFVKPLVWAGEGYQGQYPLLV--SDRYLIVDAALKRAEELGTRIIAHGCTGM---------------------GNDQVRF 127 (400)
T ss_pred HHHHHHHhcchhhcCCCCCcc--ccHHHHHHHHHHHHHHCCCCEEEecCcCC---------------------CCchhhc
Confidence 99999995 48999999999 89999999999999999999999999832 0122222
Q ss_pred ccccChhhhccccccccCC------CHHHHHHHHHHcCCCCcC--CCCCccccccc
Q 042717 175 LSHLSQAQLKRLIFPLGCI------SKEEVRKFATQFDLPNKD--RKDSQGICFLG 222 (474)
Q Consensus 175 L~~L~~~~L~~~i~PL~~l------tK~EVr~lA~~~GLp~~~--k~~S~diCFl~ 222 (474)
-.++....-..++.||.++ .|+|..+||+++|||... ++-|.|...++
T Consensus 128 rpg~~Al~el~ViaPlre~~~~k~~~R~~~i~ya~~~gipv~~~~~~yS~D~Nlw~ 183 (400)
T PRK04527 128 DLAVKALGDYQIVAPIREIQKEHTQTRAYEQKYLEERGFGVRAKQKAYTINENLLG 183 (400)
T ss_pred cHHHHHhhcCCccchHHHhcCcccccHHHHHHHHHHcCCCCCCCCCCcccccchhh
Confidence 2222211123688998754 567778999999998843 33576665554
No 12
>PRK13820 argininosuccinate synthase; Provisional
Probab=99.93 E-value=3.3e-25 Score=230.03 Aligned_cols=168 Identities=21% Similarity=0.232 Sum_probs=141.1
Q ss_pred CeEEEEEccchhHHHHHHHHHHc-CC-cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA-GH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~-G~-eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
+||+||+|||+||++++++|++. |+ +|+++|++++. ..++.+.++++|+++|||++++|++++|.+
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~------------~~~e~~~a~~~a~~lGi~~~vvd~~eef~~ 70 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQ------------PEEEIKEAEEKAKKLGDKHYTIDAKEEFAK 70 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCC------------ChHHHHHHHHHHHHcCCCEEEEeCHHHHHH
Confidence 68999999999999999999887 88 99999999863 135788999999999999999999999998
Q ss_pred hhHhhhHHHHh--cCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccc
Q 042717 97 NVVSYIIEEYR--CGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYF 174 (474)
Q Consensus 97 ~V~~~~i~~y~--~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyf 174 (474)
+++.+++..+. .| +|++|..|+..+ +..|.++|++.|+++||+||+++ ++||.+|
T Consensus 71 ~~i~~~i~~n~~~~g-Ypl~~~~cR~~i-~~~l~e~A~e~G~~~IA~G~t~~---------------------gnDq~rf 127 (394)
T PRK13820 71 DYIFPAIKANALYEG-YPLGTALARPLI-AEKIVEVAEKEGASAIAHGCTGK---------------------GNDQLRF 127 (394)
T ss_pred HHHHHHHHhCccccC-CcCcHHHHHHHH-HHHHHHHHHHcCCCEEEECCCCC---------------------cchHHHH
Confidence 88888887643 56 899999999855 89999999999999999999875 2456666
Q ss_pred ccccChhhhccccccccC--CCHHHHHHHHHHcCCCCcC---CCCCccccccc
Q 042717 175 LSHLSQAQLKRLIFPLGC--ISKEEVRKFATQFDLPNKD---RKDSQGICFLG 222 (474)
Q Consensus 175 L~~L~~~~L~~~i~PL~~--ltK~EVr~lA~~~GLp~~~---k~~S~diCFl~ 222 (474)
...+....+ .+++|+.+ ++|+|+++||+++|||+.. +|-|.|...++
T Consensus 128 e~~~~a~~l-~viaP~re~~ltK~ei~~ya~~~gip~~~~~~~~yS~d~nlw~ 179 (394)
T PRK13820 128 EAVFRASDL-EVIAPIRELNLTREWEIEYAKEKGIPVPVGKEKPWSIDENLWS 179 (394)
T ss_pred HHhhHhhcC-eeeCchhccCCCHHHHHHHHHHcCCCCCcCCCCCccccccccc
Confidence 554444444 78899987 7999999999999999853 35677766554
No 13
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.92 E-value=7.4e-25 Score=205.76 Aligned_cols=165 Identities=21% Similarity=0.354 Sum_probs=119.1
Q ss_pred eEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
||+||+|||+||++++++|.+. +.++.++|++++... .+..+.+.++++|+.+|||+++.++..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~---------~s~~~~~~v~~~~~~~~i~~~~~~~~~--- 68 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLRE---------ESDEEAEFVEEICEQLGIPLYIVRIDE--- 68 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC---------CHHHHHHHHHHHHHHTT-EEEEEE--C---
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc---------ccchhHHHHHHHHHhcCCceEEEEeee---
Confidence 7999999999999999999886 679999999987542 356788999999999999999999864
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFL 175 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL 175 (474)
......+.|..| |.+|+.+|.++|.+.|+++|+||||++ |..+|++|+..++.+... |
T Consensus 69 -----------~~~~~~~~e~~a-R~~Ry~~l~~~a~~~g~~~i~~GHh~d-------D~~ET~l~~l~rg~~~~~---l 126 (182)
T PF01171_consen 69 -----------DRKKGSNIEECA-RELRYQFLREIAKEEGCNKIALGHHLD-------DQAETFLMNLLRGSGLRG---L 126 (182)
T ss_dssp -----------HCCTTSTCHHHH-HHHHHHHHHHHHHTTT-CEEE---BHH-------HHHHHHHHHHHHT--CCC---C
T ss_pred -----------eecccCCHHHHH-HHHHHHHHHHhhhcccccceeecCcCC-------ccHHHHHHHHHHhccchh---h
Confidence 111234555544 558999999999999999999999998 568999999888765322 3
Q ss_pred cccChh---hhccccccccCCCHHHHHHHHHHcCCCCcCCCCCccc
Q 042717 176 SHLSQA---QLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGI 218 (474)
Q Consensus 176 ~~L~~~---~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~di 218 (474)
.++... .-..+++||..++|+||+++|++.|+|+.++++|.+.
T Consensus 127 ~~~~~~~~~~~~~~iRPLl~~~k~ei~~~~~~~~i~~~~D~tN~~~ 172 (182)
T PF01171_consen 127 AGMPPVSPFKGIKLIRPLLYVSKDEIRAYAKENGIPYVEDPTNYDE 172 (182)
T ss_dssp C-S-SEEEETTCEEE-GGGCS-HHHHHHHHHHTT-SSBS-CCGGCT
T ss_pred ccccccccccCcccCCcchhCCHHHHHHHHHHCCCcEEECcCCCCC
Confidence 333321 1258999999999999999999999999998887664
No 14
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.92 E-value=1.6e-24 Score=203.93 Aligned_cols=171 Identities=22% Similarity=0.321 Sum_probs=134.1
Q ss_pred eEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
||+||+|||+||++++++|++. |++|.++|++++... .+.++.+.++++|+.+|||++++++.....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~---------~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~ 71 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP---------ESDEEAEFVQQFCKKLNIPLEIKKVDVKAL 71 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh---------hHHHHHHHHHHHHHHcCCCEEEEEecchhh
Confidence 6999999999999999999874 789999999986531 135689999999999999999999863210
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFL 175 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL 175 (474)
......++|..|.+ +|+..+.++|+++|+++|+|||+++ |..++.+++..++.. .+.+
T Consensus 72 -----------~~~~~~~~~~~~r~-~R~~~l~~~a~~~g~~~i~~Gh~~~-------D~~e~~l~~~~~g~~---~~~l 129 (189)
T TIGR02432 72 -----------AKGKKKNLEEAARE-ARYDFFEEIAKKHGADYILTAHHAD-------DQAETILLRLLRGSG---LRGL 129 (189)
T ss_pred -----------ccccCCCHHHHHHH-HHHHHHHHHHHHcCCCEEEEcCccH-------HHHHHHHHHHHcCCC---cccc
Confidence 01112356777765 7899999999999999999999997 356777776665442 2234
Q ss_pred cccChh----hhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccc
Q 042717 176 SHLSQA----QLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFL 221 (474)
Q Consensus 176 ~~L~~~----~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl 221 (474)
+.+... ....+++||.+++|+||+++|+++|||+++++++.+.||.
T Consensus 130 ~~~~~~~~~~~~~~iirPL~~~~k~ei~~~~~~~~lp~~~~~~~~~~~~~ 179 (189)
T TIGR02432 130 SGMKPIRILGNGGQIIRPLLGISKSEIEEYLKENGLPWFEDETNQDDKYL 179 (189)
T ss_pred cCCccccccCCCCEEECCCCCCCHHHHHHHHHHcCCCeeeCCCCCCCccc
Confidence 444321 1246899999999999999999999999999999888875
No 15
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.92 E-value=1.5e-24 Score=202.92 Aligned_cols=168 Identities=18% Similarity=0.248 Sum_probs=132.5
Q ss_pred eEEEEEccchhHHHHHHHHHHcC----CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAG----HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G----~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
||+||+|||+||+++++++++.+ .+|.++|++++... .+.++.+.++++|+.+|||++++...
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~---- 67 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRP---------ESDEEAAFVADLCAKLGIPLYILVVA---- 67 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCc---------hHHHHHHHHHHHHHHcCCcEEEEeec----
Confidence 68999999999999999998874 48999999976421 23578999999999999999998211
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFL 175 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL 175 (474)
+..+...|+|..|.. +|+..|.++|+++|+++|+|||++++ ..++.+++..++...+ .+
T Consensus 68 ----------~~~~~~~~~~~~~r~-~r~~~l~~~a~~~~~~~i~~Gh~~dD-------~~e~~l~~l~~g~~~~---~l 126 (185)
T cd01992 68 ----------LAPKPGGNLEAAARE-ARYDFFAEIAKEHGADVLLTAHHADD-------QAETVLMRLLRGSGLR---GL 126 (185)
T ss_pred ----------cccCCCCCHHHHHHH-HHHHHHHHHHHHcCCCEEEEcCCcHH-------HHHHHHHHHHccCCcc---cc
Confidence 012445688888754 88999999999999999999999973 4566666655543321 12
Q ss_pred ccc---ChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccc
Q 042717 176 SHL---SQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFL 221 (474)
Q Consensus 176 ~~L---~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl 221 (474)
..+ .......+++||.+++|+||+++|+++|||++.++++++.||.
T Consensus 127 ~~~~~~~~~~~~~virPl~~~~k~eI~~~~~~~~l~~~~~~~~~~~~~~ 175 (185)
T cd01992 127 AGMPARIPFGGGRLIRPLLGITRAEIEAYLRENGLPWWEDPSNEDPRYT 175 (185)
T ss_pred cCCCcccCCCCCeEECCCCCCCHHHHHHHHHHcCCCeEECCCCCCCccc
Confidence 222 1223357899999999999999999999999999999999986
No 16
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.92 E-value=3e-24 Score=200.26 Aligned_cols=170 Identities=21% Similarity=0.312 Sum_probs=132.3
Q ss_pred eEEEEEccchhHHHHHHHHHHc------CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSA------GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDE 93 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~------G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~ 93 (474)
||+|++|||+||++++++|++. +++|+++|++++... .+..+.+.++++|+++|++++++++.+.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 71 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPG---------YRDESLEVVERLAEELGIELEIVSFKEE 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCC---------CcHHHHHHHHHHHHHcCCceEEEehhhh
Confidence 6999999999999999999886 469999999986431 2467889999999999999999999866
Q ss_pred HHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccc
Q 042717 94 YWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTY 173 (474)
Q Consensus 94 f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsy 173 (474)
|. . ..........++|..|.+ +++..+.+.|+++|+++|+|||+++ |..++++++..++....
T Consensus 72 ~~-~-----~~~~~~~~~~~~~~~c~~-~r~~~l~~~a~~~g~~~l~~Gh~~d-------D~~et~l~~~~~g~~~~--- 134 (185)
T cd01993 72 YT-D-----DIEVKKRGGKSPCSLCGV-LRRGLLNKIAKELGADKLATGHNLD-------DEAETLLMNLLRGGILR--- 134 (185)
T ss_pred cc-h-----hhhhhccCCCCCCCccHH-HHHHHHHHHHHHcCCCEEEEcCChH-------HHHHHHHHHHHhcCHHH---
Confidence 51 1 112233455688999998 6788999999999999999999998 45677777766554311
Q ss_pred cccccC----hhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCC
Q 042717 174 FLSHLS----QAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDS 215 (474)
Q Consensus 174 fL~~L~----~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S 215 (474)
.+.++. ......+++||.+++|+||++||+++|||+.+++++
T Consensus 135 ~~~~~~~~~~~~~~~~iirPL~~~~k~eI~~~~~~~~l~~~~d~~~ 180 (185)
T cd01993 135 LMRPGPILYLDEGDVTRIRPLVYVREKEIVLYAELNGLPFVEEECP 180 (185)
T ss_pred HcCCCCccccCCCCceEEeecccCCHHHHHHHHHHcCCCcccCCCC
Confidence 122221 122246899999999999999999999999886543
No 17
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.90 E-value=4.3e-23 Score=203.69 Aligned_cols=163 Identities=19% Similarity=0.291 Sum_probs=127.0
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHh
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKN 97 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~ 97 (474)
.++|+||+|||+||+++++++++.|++|+++|++++.. +..+.+.|+++|+.+||+|++++++. +.
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~~~-----------~~~e~~~a~~~a~~lgi~~~ii~~~~-~~-- 77 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSPSI-----------SPRELEDAIIIAKEIGVNHEFVKIDK-MI-- 77 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHhCCCEEEEEecCCCC-----------CHHHHHHHHHHHHHcCCCEEEEEcHH-HH--
Confidence 46899999999999999999999999999999986431 35688999999999999999999853 21
Q ss_pred hHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccc
Q 042717 98 VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSH 177 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~ 177 (474)
+.+. ..++++|..|++.+ |..+.++|+++|+++|+|||++++.. +.. .+ +..
T Consensus 78 ------~~~~-~n~~~~c~~ck~~~-~~~l~~~A~~~g~~~I~~G~n~dD~~-------~~r---pg----------~~a 129 (252)
T TIGR00268 78 ------NPFR-ANVEERCYFCKKMV-LSILVKEAEKRGYDVVVDGTNADDLF-------DHR---PG----------YRA 129 (252)
T ss_pred ------HHHH-hCCCcccchhhHHH-HHHHHHHHHHcCCCEEEECCCCcccc-------ccc---HH----------HHH
Confidence 1222 35789999999954 89999999999999999999998421 100 00 111
Q ss_pred cChhhhccccccccC--CCHHHHHHHHHHcCCCCcCCCCCcccccccccchH
Q 042717 178 LSQAQLKRLIFPLGC--ISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFS 227 (474)
Q Consensus 178 L~~~~L~~~i~PL~~--ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~ 227 (474)
+. . ...++||.+ ++|+||+++|+++|+|++++|+ ..|++++..|.
T Consensus 130 ~~--~-~~~~~PL~~~~l~K~eIr~la~~~gl~~~~~ps--~~Cl~sr~~~g 176 (252)
T TIGR00268 130 VK--E-FNGVSPWAEFGITKKEIREIAKSLGISFPDKPS--EACLASRFPFG 176 (252)
T ss_pred HH--H-cCCCCcchhcCCCHHHHHHHHHHcCCCccCCCC--CCceEeecCCC
Confidence 11 1 135699975 7999999999999999998875 47988764443
No 18
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.8e-23 Score=209.86 Aligned_cols=194 Identities=18% Similarity=0.263 Sum_probs=146.9
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcC--CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAG--HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G--~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
+.+|+||+|||+||++++++|++.+ +++.++|++++... .+..+.+.++++|+.+|+|+++.++...+.
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 91 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRG---------YSDQEAELVEKLCEKLGIPLIVERVTDDLG 91 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccCceEEEEEecCCCCC---------ccchHHHHHHHHHHHhCCceEEEEEEeecc
Confidence 6899999999999999999999986 79999999987542 246788999999999999999999976433
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFL 175 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL 175 (474)
.... . ..++|..|.+ +|+.+|.+.|++.|+++|+||||++ |..+|++|+..++...+....+
T Consensus 92 ~~~~--------~--~~~~c~~c~~-~R~~~l~~~a~~~g~~~i~tgH~~d-------D~~et~lm~l~~g~~~~~l~~~ 153 (298)
T COG0037 92 RETL--------D--GKSICAACRR-LRRGLLYKIAKELGADKIATGHHLD-------DQAETFLMNLLRGSGLRGLRGM 153 (298)
T ss_pred cccc--------C--CCChhHHHHH-HHHHHHHHHHHHcCCCeEEeccCcH-------HHHHHHHHHHHcCcHhhHHhhC
Confidence 2110 0 2579999988 7899999999999999999999998 5688999998887653311112
Q ss_pred cccChhhhc-cccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccCCC
Q 042717 176 SHLSQAQLK-RLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEG 239 (474)
Q Consensus 176 ~~L~~~~L~-~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~~G 239 (474)
.......-. .+++||..++++||..||...|+|+..++.+.+.-+ .+..++..|..+....||
T Consensus 154 ~~~~~~~~~~~~iRPL~~~~~~ei~~~~~~~~l~~~~d~~n~~~~~-~R~~~r~~l~~~~~~~p~ 217 (298)
T COG0037 154 PPKRPFEGGLLIIRPLLYVREKEIELYAKEKGLPYIEDESNYDLRY-TRNRIREELLPLEEERPG 217 (298)
T ss_pred CcccccCCCCeeeeecccCCHHHHHHHHHHcCCCEeecCCCCCchh-hHHHHHHHHHHHHHhCCC
Confidence 222211112 589999999999999999999999987766533322 234455555555544454
No 19
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.90 E-value=3.9e-23 Score=207.93 Aligned_cols=174 Identities=24% Similarity=0.300 Sum_probs=133.3
Q ss_pred eEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEEEEcchHHHHh
Q 042717 20 KVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEVVHLTDEYWKN 97 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~vvd~~~~f~~~ 97 (474)
||+||+|||+||+++|++|++. |.+|+++|++++.. ...+.+.++++|+++|+ +++++|.++.|...
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~~-----------~~~E~~~~~~~~~~~g~i~~~vvd~~e~fl~~ 69 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLL-----------RKNEAERVEELFSKLLGINLIVVDASERFLSA 69 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCCC-----------ChHHHHHHHHHHHHhCCCcEEEEcCcHHHHHH
Confidence 6899999999999999999985 99999999998753 24678999999999987 99999998776643
Q ss_pred hHhhhHHHHhcCCC--CCcccccchHHHHHHHHHHHHHcC-CCEEEEceecccccCccCCCchhhHHhhhcCCccccccc
Q 042717 98 VVSYIIEEYRCGRT--PNPDVLCNTRIKFGAFMDAISSME-FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYF 174 (474)
Q Consensus 98 V~~~~i~~y~~G~t--pNPci~Cnr~iKf~~l~~~A~~~G-ad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyf 174 (474)
. .+.+ .+-|..|.+ .++..|.++|+++| +++|++||++++ ..++..++...+..|++.++
T Consensus 70 l---------~~v~npe~rr~~~g~-~~~~~l~~~A~~~g~~~~Ia~Gh~~dD-------~~Es~~~~~~~~~IKs~~n~ 132 (295)
T cd01997 70 L---------KGVTDPEEKRKIIGE-TFIEVFEEEAKKLGLAEYLAQGTLYPD-------VIESGSGKGSADTIKSHHNV 132 (295)
T ss_pred h---------cCCCCHHHHHHHhhH-HHHHHHHHHHHHcCCCCEEEECCcccc-------hhhhcccccccccccccccc
Confidence 1 1221 234566766 56889999999999 999999999974 23333333334455666664
Q ss_pred ccccChhhhccccccccCCCHHHHHHHHHHcCCCC---cCCCCCcccccccc
Q 042717 175 LSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN---KDRKDSQGICFLGK 223 (474)
Q Consensus 175 L~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~---~~k~~S~diCFl~~ 223 (474)
+ ++.+....++++||.+++|+|||++|+++|||. +.+|-+ +.|+..+
T Consensus 133 ~-Gl~a~~~~~vi~PL~~l~K~EVR~lar~lGLp~~~~~~~Pfp-~p~La~R 182 (295)
T cd01997 133 G-GLPEDMKLKLIEPLRDLFKDEVRELGRELGLPEEIVERHPFP-GPGLAVR 182 (295)
T ss_pred c-ccchHhhCCcccccccCcHHHHHHHHHHcCCCchhhCCCCCC-CCcceeE
Confidence 3 455444458999999999999999999999998 666634 5777544
No 20
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.90 E-value=5.4e-23 Score=203.63 Aligned_cols=169 Identities=21% Similarity=0.273 Sum_probs=128.1
Q ss_pred ccccCCCCCCCCeEEEEEccchhHHHHHHHHHHc------CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHc
Q 042717 8 YLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSA------GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQV 81 (474)
Q Consensus 8 ~l~~~~~~~~~~kVlValSGGvDSsvaa~LLke~------G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~L 81 (474)
+.+..|. ..+++|+||+|||+||+++|++|.+. +++|.++|++++... . +.+.++++|+.+
T Consensus 20 i~~~~li-~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~----------~--~~~~~~~~~~~l 86 (258)
T PRK10696 20 IADFNMI-EEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPG----------F--PEHVLPEYLESL 86 (258)
T ss_pred HHHcCCC-CCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCC----------C--CHHHHHHHHHHh
Confidence 3344444 35689999999999999999999663 578999999986421 1 223578999999
Q ss_pred CCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHH
Q 042717 82 DVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVL 161 (474)
Q Consensus 82 GIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L 161 (474)
|||+++++.+. +. +. .+....+ ..+|..|.+ +|+..|.++|++.|+++|+||||++ |..+++++
T Consensus 87 gI~~~v~~~~~-~~--~~---~~~~~~~--~~~c~~c~~-~R~~~l~~~a~~~g~~~Ia~GH~~d-------D~~Et~l~ 150 (258)
T PRK10696 87 GVPYHIEEQDT-YS--IV---KEKIPEG--KTTCSLCSR-LRRGILYRTARELGATKIALGHHRD-------DILETLFL 150 (258)
T ss_pred CCCEEEEEecc-hh--hh---hhhhccC--CChhHHHHH-HHHHHHHHHHHHcCCCEEEEcCchH-------HHHHHHHH
Confidence 99999998642 21 11 1222222 468999998 7899999999999999999999998 45788888
Q ss_pred hhhcCCcccccccccccCh-----hhhccccccccCCCHHHHHHHHHHcCCCCcC
Q 042717 162 ELSKDKVKDQTYFLSHLSQ-----AQLKRLIFPLGCISKEEVRKFATQFDLPNKD 211 (474)
Q Consensus 162 ~~~~d~~kDQsyfL~~L~~-----~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~ 211 (474)
+..++.. |.++.+ .....+++||..++|+||+++|+++|+|+.+
T Consensus 151 nl~rg~~------l~~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~~ 199 (258)
T PRK10696 151 NMFYGGK------LKAMPPKLLSDDGKHIVIRPLAYVAEKDIIKFAEAKEFPIIP 199 (258)
T ss_pred HHHhCCc------ccccCCeeecCCCceeEEecCccCCHHHHHHHHHHcCCCEee
Confidence 8877643 333332 1223689999999999999999999999864
No 21
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.89 E-value=1.7e-22 Score=188.64 Aligned_cols=161 Identities=20% Similarity=0.162 Sum_probs=117.5
Q ss_pred eEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEE--EEEcchHHHHh
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLE--VVHLTDEYWKN 97 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~--vvd~~~~f~~~ 97 (474)
+|+|++|||+||+++|++|++.|++|+++|+++++.... .+..+...+.+.+..+++++. ++++..+
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g~~v~av~~d~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---- 69 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRGIEVDALHFNSGPFTSE-------KAREKVEDLARKLARYSPGHKLVVIIFTFF---- 69 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcCCeEEEEEEeCCCCCch-------HHHHHHHHHHHHHHHhCCCCceEEEeCcHH----
Confidence 589999999999999999999999999999999864210 011334555555567777765 5554432
Q ss_pred hHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccc
Q 042717 98 VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSH 177 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~ 177 (474)
+. .+.+..+.++|||+.|++.+ +..+.++|++.|+++|+|||++++ ...+.+.+....
T Consensus 70 ~~---~~~~~~~~~~~~c~~Cr~~~-~~~~~~~A~~~g~~~I~~G~~~~D-------~~~~~~~~l~~~----------- 127 (177)
T cd01712 70 VQ---KEIYGYGKEKYRCILCKRMM-YRIAEKLAEELGADAIVTGESLGQ-------VASQTLENLLVI----------- 127 (177)
T ss_pred HH---HHHHHhCCCccHhHHHHHHH-HHHHHHHHHHcCCCEEEEccCccc-------chHHHHHhhhhc-----------
Confidence 11 13455688999999999955 799999999999999999999874 222222222110
Q ss_pred cChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCC
Q 042717 178 LSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKD 214 (474)
Q Consensus 178 L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~ 214 (474)
....-..+++||.+++|+||+++|+++|++.+.+..
T Consensus 128 -~~~~~~~i~rPl~~~~K~eI~~~a~~~gl~~~~~~~ 163 (177)
T cd01712 128 -SSGTDLPILRPLIGFDKEEIIGIARRIGTYDISIRP 163 (177)
T ss_pred -ccCCCCeEECCCCCCCHHHHHHHHHHcCCcceeccC
Confidence 011114799999999999999999999999987533
No 22
>PLN00200 argininosuccinate synthase; Provisional
Probab=99.89 E-value=9.4e-23 Score=212.18 Aligned_cols=166 Identities=22% Similarity=0.259 Sum_probs=130.4
Q ss_pred CeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCC-EEEEEcchHHHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP-LEVVHLTDEYWK 96 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIp-l~vvd~~~~f~~ 96 (474)
+||+||+|||+||++++++|+++ |++|+++|++.++ ..+|++.++++|+.+||+ ++++|++++|.+
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq------------~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~ 73 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQ------------GIEELEGLEAKAKASGAKQLVVKDLREEFVR 73 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCC------------ChHHHHHHHHHHHHcCCCEEEEEeCHHHHHH
Confidence 59999999999999999999998 9999999999874 136899999999999997 588999999988
Q ss_pred hhHhhhHHHHhcCCCCCcccccch----HHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNT----RIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr----~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
+++.+.+. .+..-+-|+.|.. .+.+..+.++|++.|+++||+||++. ++||.
T Consensus 74 ~~i~p~i~---~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgk---------------------GnDq~ 129 (404)
T PLN00200 74 DYIFPCLR---ANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGK---------------------GNDQV 129 (404)
T ss_pred hhcCHHHH---cCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCC---------------------CCcHH
Confidence 76644322 2222245566655 13378889999999999999999974 25677
Q ss_pred cc---ccccChhhhccccccccCCC---HHHHHHHHHHcCCCCcCC---CCCccccccc
Q 042717 173 YF---LSHLSQAQLKRLIFPLGCIS---KEEVRKFATQFDLPNKDR---KDSQGICFLG 222 (474)
Q Consensus 173 yf---L~~L~~~~L~~~i~PL~~lt---K~EVr~lA~~~GLp~~~k---~~S~diCFl~ 222 (474)
+| +..+.++. .+++|+.++. |+|+++||+++|||++.+ |-|.|...++
T Consensus 130 rf~~~~~al~pel--~ViaPlre~~~~~r~e~~~~A~~~Gipv~~~~~~~yS~D~Nlw~ 186 (404)
T PLN00200 130 RFELTFFALNPEL--KVVAPWREWDIKGREDLIEYAKKHNIPVPVTKKSIYSRDRNLWH 186 (404)
T ss_pred HHHHHHHHhCCCC--eeeCchhhcCCCCHHHHHHHHHHcCCCCCCCCCCCCcccccccc
Confidence 77 55555443 7999999764 999999999999998654 4566665554
No 23
>PRK08349 hypothetical protein; Validated
Probab=99.89 E-value=3.4e-22 Score=190.33 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=116.9
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHc----CCCE---EEEEcc
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQV----DVPL---EVVHLT 91 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~L----GIpl---~vvd~~ 91 (474)
+|++|++|||+||+++|++|++.|++|+++|++++ ..+.+.++++|+.+ |+++ +++|+.
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~~g~~v~av~~d~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 66 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLRRGVEVYPVHFRQD--------------EKKEEKVRELVERLQELHGGKLKDPVVVDAF 66 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHHcCCeEEEEEEeCC--------------HHHHHHHHHHHHHHHHhcCCCcceEEEEcch
Confidence 47999999999999999999999999999999973 13345555555555 6886 567765
Q ss_pred hHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccc
Q 042717 92 DEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQ 171 (474)
Q Consensus 92 ~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQ 171 (474)
+.+. .++..+ +..+..+++|+.|++ +++..+.++|.++|+++|+|||+.++ ...+.+++.....
T Consensus 67 ~~~~-~~~~~~---~~~~~~~~~c~~cr~-~~~~~a~~~A~~~g~~~I~tG~~~~d-------~a~~~l~nl~~~~---- 130 (198)
T PRK08349 67 EEQG-PVFEKL---RELKKEKWTCIFCKY-TMYRKAERIAHEIGASAIITGDSLGQ-------VASQTLDNLMVIS---- 130 (198)
T ss_pred HHhH-HHHHHH---HhhCCCCCchHHHHH-HHHHHHHHHHHHcCCCEEEEecCCch-------HHHHHHHHHhccc----
Confidence 4322 222221 123567899999996 56899999999999999999999874 3344445543211
Q ss_pred cccccccChhhhccccccccCCCHHHHHHHHHHcCCCCc-CCCCCcccccc
Q 042717 172 TYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK-DRKDSQGICFL 221 (474)
Q Consensus 172 syfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~-~k~~S~diCFl 221 (474)
...-..+++||.+++|+||+++|+++|++.. .++. ..|.+
T Consensus 131 --------~~~~i~i~rPL~~~~K~eI~~~a~~~g~~~~~~~~~--~~C~~ 171 (198)
T PRK08349 131 --------TATDLPVLRPLIGLDKEEIVKIAKEIGTFEISIEPE--PPCPF 171 (198)
T ss_pred --------cccCCeEEcCCCCCCHHHHHHHHHHcCChhhhhCCC--CCCcC
Confidence 1111368999999999999999999997643 2332 35865
No 24
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.89 E-value=2.2e-22 Score=191.52 Aligned_cols=155 Identities=23% Similarity=0.278 Sum_probs=121.5
Q ss_pred EEEEEccchhHHHHHHHHHHcCC-cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhH
Q 042717 21 VAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVV 99 (474)
Q Consensus 21 VlValSGGvDSsvaa~LLke~G~-eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~ 99 (474)
|+|++|||+||++++++|++.+. +|.++|++++.. +..+.+.++++|+++||++++++++....
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v~vd~g~~-----------~~~~~~~~~~~a~~lgi~~~~~~~~~~~~---- 65 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLF-----------PRRELEEAKRLAKEIGIRHEVIETDELDD---- 65 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCCcEEEEEeCCCCC-----------CHHHHHHHHHHHHHcCCcEEEEeCCcccc----
Confidence 68999999999999999999854 999999997642 35789999999999999999999974211
Q ss_pred hhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccC
Q 042717 100 SYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLS 179 (474)
Q Consensus 100 ~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~ 179 (474)
. ...+..+++|..|++. ++..+.++|++.|+++|+|||++++. .+.. .++.
T Consensus 66 ----~-~~~~~~~~~~~~~r~~-~~~~l~~~a~~~g~~~I~~G~~~dD~-------~e~~----------------~~~~ 116 (202)
T cd01990 66 ----P-EFAKNPPDRCYLCKKA-LYEALKEIAEELGLDVVLDGTNADDL-------GDYR----------------PGLK 116 (202)
T ss_pred ----H-HHhcCCCCccchhHHH-HHHHHHHHHHHCCCCEEEEcCccccC-------cccC----------------hHHH
Confidence 1 1224567899999984 58999999999999999999998742 1110 0011
Q ss_pred hhhhcccccccc--CCCHHHHHHHHHHcCCCCcCCCCCcccccc
Q 042717 180 QAQLKRLIFPLG--CISKEEVRKFATQFDLPNKDRKDSQGICFL 221 (474)
Q Consensus 180 ~~~L~~~i~PL~--~ltK~EVr~lA~~~GLp~~~k~~S~diCFl 221 (474)
......+++||. +++|+||+++|+++|+|+++++++ .|+.
T Consensus 117 ~~~~~~iirPL~~~~~~K~ei~~~a~~~gl~~~~~~~~--~c~~ 158 (202)
T cd01990 117 ALRELGVRSPLAEAGLGKAEIRELARELGLPTWDKPAM--ACLA 158 (202)
T ss_pred HHHHcCCcCchhhcCCCHHHHHHHHHHcCCCCcCCCCc--chHH
Confidence 111136899999 699999999999999999888876 4654
No 25
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.87 E-value=6.4e-22 Score=213.19 Aligned_cols=175 Identities=22% Similarity=0.294 Sum_probs=136.2
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHH-HHHHcCCCEEEEEcchHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA-VCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~-va~~LGIpl~vvd~~~~f~ 95 (474)
+++|+||+|||+||+++|++|++. |++|+++|++++.. ...+.+.+.+ +|+++||+++++|+++.|.
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~lg~~v~av~vd~g~~-----------~~~e~~~~~~~~a~~lgi~~~vvd~~~~f~ 283 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLL-----------RKNEAEQVMEMFREHFGLNLIHVDASDRFL 283 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHhCCceEEEEEeCCCC-----------CHHHHHHHHHHHHHHcCCcEEEEccHHHHH
Confidence 478999999999999999999887 99999999998752 1345667775 7799999999999987766
Q ss_pred HhhHhhhHHHHhcCC--CCCcccccchHHHHHHHHHHHHHc-CCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 96 KNVVSYIIEEYRCGR--TPNPDVLCNTRIKFGAFMDAISSM-EFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~--tpNPci~Cnr~iKf~~l~~~A~~~-Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
... .|. ....|..|.+.. +..|.+.|++. |+++|||||++++ ..++..++ ..+..|+|.
T Consensus 284 ~~l---------~g~~~~~~~r~~~~~~~-~~~~~~~a~~~~g~~~latGhn~dD-------~~Et~~~~-~~~~ik~~~ 345 (511)
T PRK00074 284 SAL---------AGVTDPEEKRKIIGREF-IEVFEEEAKKLGGVKFLAQGTLYPD-------VIESGGTK-KAATIKSHH 345 (511)
T ss_pred Hhc---------cCCCCcHHhhhhhhHHH-HHHHHHHHHHccCCCEEEECCCcch-------hhhhcCCC-Ccccccccc
Confidence 431 232 223466676643 68889999999 9999999999873 34544444 445677788
Q ss_pred ccccccChhhhccccccccCCCHHHHHHHHHHcCCC---CcCCCCCcccccccc
Q 042717 173 YFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP---NKDRKDSQGICFLGK 223 (474)
Q Consensus 173 yfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp---~~~k~~S~diCFl~~ 223 (474)
+ +.++++.....+++||.+++|+|||++|+++||| .+.+|-+ +.|+..+
T Consensus 346 ~-l~Gl~~~~~~~ii~PL~~l~K~EIr~~a~~~gLp~~~~~~~p~p-~~~la~R 397 (511)
T PRK00074 346 N-VGGLPEDMKLKLVEPLRELFKDEVRKLGLELGLPEEIVYRHPFP-GPGLAIR 397 (511)
T ss_pred C-ccCcChhHhcccccchhhcCHHHHHHHHHHcCCCHHHhCCCCCC-CCceeeE
Confidence 7 7788776556799999999999999999999999 5666634 5777554
No 26
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=99.87 E-value=4.8e-22 Score=206.42 Aligned_cols=169 Identities=23% Similarity=0.271 Sum_probs=131.9
Q ss_pred EEEEEccchhHHHHHHHHHHcCC-cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCC-EEEEEcchHHHHhh
Q 042717 21 VAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP-LEVVHLTDEYWKNV 98 (474)
Q Consensus 21 VlValSGGvDSsvaa~LLke~G~-eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIp-l~vvd~~~~f~~~V 98 (474)
|+||+|||+||++++++|++++. +|+++|++++.. .++.+.++++|+.+|++ ++++|++++|.+++
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~------------~~~~e~a~~~a~~lG~~~~~viD~~~ef~~~~ 68 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQP------------EEEIEAIEEKALKLGAKKHVVVDLREEFVEDY 68 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCc------------chhHHHHHHHHHHcCCCEEEEeccHHHHHHHh
Confidence 68999999999999999999854 999999998742 12358999999999996 99999999999887
Q ss_pred HhhhHHHHh--cCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccc
Q 042717 99 VSYIIEEYR--CGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLS 176 (474)
Q Consensus 99 ~~~~i~~y~--~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~ 176 (474)
+.+++..+. .|++|+||..|+.. .+..+.++|++.|+++||+|++..- .|+. .+..+ +.
T Consensus 69 i~~~i~an~~~~g~y~l~t~l~R~~-i~~~l~~~A~~~Ga~~VA~G~t~~g-----nDq~---rf~~~----------~~ 129 (385)
T cd01999 69 IFPAIQANALYEGTYPLGTALARPL-IAKALVEVAKEEGADAVAHGCTGKG-----NDQV---RFELA----------FY 129 (385)
T ss_pred hHHHHHhCccccCCCcCCcHhHHHH-HHHHHHHHHHHcCCCEEEeCCCCCC-----CcHH---HHHHH----------HH
Confidence 777766432 47789999999875 4899999999999999999998631 0111 11111 11
Q ss_pred ccChhhhccccccccCC---CHHHHHHHHHHcCCCCcC---CCCCccccccc
Q 042717 177 HLSQAQLKRLIFPLGCI---SKEEVRKFATQFDLPNKD---RKDSQGICFLG 222 (474)
Q Consensus 177 ~L~~~~L~~~i~PL~~l---tK~EVr~lA~~~GLp~~~---k~~S~diCFl~ 222 (474)
.+.++ ..++.||.++ +|+|+++||+++|||+.. +|-|.|...++
T Consensus 130 al~pe--l~ViaPlre~~~~sr~ev~~~A~~~Gip~~~~~~~pyS~d~nl~~ 179 (385)
T cd01999 130 ALNPD--LKIIAPWRDWEFLSREEEIEYAEEHGIPVPVTKKKPYSIDENLWG 179 (385)
T ss_pred hhCCC--CEEEcchhhhhcCCHHHHHHHHHHcCCCCcccCCCCCccCCCcce
Confidence 12111 2689999988 999999999999999863 46788876664
No 27
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=99.85 E-value=8.9e-21 Score=197.02 Aligned_cols=171 Identities=20% Similarity=0.209 Sum_probs=127.4
Q ss_pred CCCCCCCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHc---C--CCEE
Q 042717 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQV---D--VPLE 86 (474)
Q Consensus 12 ~~~~~~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~L---G--Ipl~ 86 (474)
++|.....|++|++|||+||+|++++|++.|++|+++|++++.. .++++.+.++++|+.+ + ++++
T Consensus 166 GlP~g~~~kvlvllSGGiDS~vaa~ll~krG~~V~av~~~~~~~----------~~~~~~~~v~~l~~~l~~~~~~~~l~ 235 (371)
T TIGR00342 166 GLPVGTQGKVLALLSGGIDSPVAAFMMMKRGCRVVAVHFFNEPA----------ASEKAREKVERLANSLNETGGSVKLY 235 (371)
T ss_pred CcCcCcCCeEEEEecCCchHHHHHHHHHHcCCeEEEEEEeCCCC----------ccHHHHHHHHHHHHHHhhcCCCceEE
Confidence 67888899999999999999999999999999999999997532 2457889999999988 3 5788
Q ss_pred EEEcchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcC
Q 042717 87 VVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKD 166 (474)
Q Consensus 87 vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d 166 (474)
++|+.+.+. .+. .....+..|+.|++ +.+..+.++|++.|+++|+|||++++. ..+.+.+..
T Consensus 236 ~v~~~~~~~-~i~-------~~~~~~~~cv~cRr-~m~~~a~~~A~~~g~~~I~tG~~l~d~-------asqtl~nl~-- 297 (371)
T TIGR00342 236 VFDFTDVQE-EII-------HIIPEGYTCVLCRR-MMYKAASKVAEKEGCLAIVTGESLGQV-------ASQTLENLR-- 297 (371)
T ss_pred EEeCHHHHH-HHH-------hcCCCCceeHhHHH-HHHHHHHHHHHHcCCCEEEEccChHhh-------hccHHHHHH--
Confidence 888875432 221 12234578999999 448999999999999999999999853 222233221
Q ss_pred CcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCCCc-CCCCCcccccc
Q 042717 167 KVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK-DRKDSQGICFL 221 (474)
Q Consensus 167 ~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~-~k~~S~diCFl 221 (474)
.+....-..+++||.+++|+||+++|+++|.... ..| +.++|..
T Consensus 298 ----------~i~~~~~~~I~rPLi~~~K~EIi~~a~~iG~~~~s~~~-~~~c~~~ 342 (371)
T TIGR00342 298 ----------VIQAVSNTPILRPLIGMDKEEIIELAKEIGTYEISIEP-HEDCCTI 342 (371)
T ss_pred ----------HHhccCCCCEEeCCCCCCHHHHHHHHHHhCCcceeecC-CCceeEe
Confidence 1111111258999999999999999999996332 234 3456653
No 28
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.85 E-value=8.9e-21 Score=192.36 Aligned_cols=175 Identities=22% Similarity=0.292 Sum_probs=123.7
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHH-HHcCCCEEEEEcchHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC-DQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va-~~LGIpl~vvd~~~~f~ 95 (474)
+++|+||+|||+||+++|+++++. |.+++++|++++.. ...+.+.+.+.+ +++||+++++|+++.|.
T Consensus 16 ~~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~-----------~~~E~e~~~~~~~~~lgi~~~vvd~~e~fl 84 (311)
T TIGR00884 16 DAKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLL-----------RKGEAEQVVKTFGDRLGLNLVYVDAKERFL 84 (311)
T ss_pred CCcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCC-----------ChHHHHHHHHHHHHHcCCcEEEEeCcHHHH
Confidence 478999999999999999999886 89999999998753 235666776654 58999999999987765
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcC-CCEEEEceecccccCccCCCchhhHHhhhc-CCcccccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSME-FDYVASGHYAKVVHSSADQEYKPSVLELSK-DKVKDQTY 173 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~G-ad~IATGH~a~~~~~~~dd~~~~~~L~~~~-d~~kDQsy 173 (474)
... .. ......-|..|.+ ..+..|.++|+++| +++|++||++++. .++. . +. +..|...
T Consensus 85 ~~l-----~~--v~~p~~~r~~~~~-~~~~~~~~~A~~~g~~~~la~Gt~~dD~-------~Es~-~--G~~~~iks~~- 145 (311)
T TIGR00884 85 SAL-----KG--VTDPEEKRKIIGR-VFIEVFEREAKKIGDAEYLAQGTIYPDV-------IESA-A--GTAHVIKSHH- 145 (311)
T ss_pred hhh-----cC--CCChHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEECCCChhh-------hhhc-c--ChhHhhhccC-
Confidence 431 10 0111223556666 44788889999999 9999999999742 2221 1 00 0000000
Q ss_pred cccccChhhhccccccccCCCHHHHHHHHHHcCCC---CcCCCCCcccccccc
Q 042717 174 FLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP---NKDRKDSQGICFLGK 223 (474)
Q Consensus 174 fL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp---~~~k~~S~diCFl~~ 223 (474)
.+.++++.....+++||.+++|+|||++|+++||| .+.+|.+ +.|+..+
T Consensus 146 ~~~gl~~~~~~~ii~PL~~l~K~EVr~la~~lgLp~~~~~~~Pf~-~p~La~R 197 (311)
T TIGR00884 146 NVGGLPEDMKLKLVEPLRELFKDEVRKLGKELGLPEEIVWRHPFP-GPGLAVR 197 (311)
T ss_pred ccccCChhhcCceEEEcccCcHHHHHHHHHHcCCCHHHhhCCCCC-CCceEee
Confidence 12334444345799999999999999999999999 5666644 6787654
No 29
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=99.84 E-value=2.5e-20 Score=197.42 Aligned_cols=173 Identities=22% Similarity=0.269 Sum_probs=133.8
Q ss_pred CCCeEEEEEccchhHHHHHHHHHH-----cCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHS-----AGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke-----~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
.+++|+||+|||+||++++++|.+ .|++++++|++++..+ .++++.+.++.+|+++|||++++++.
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~---------~s~~~~~~~~~~~~~l~i~~~~~~~~ 84 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP---------NADSWVKHCEQVCQQWQVPLVVERVQ 84 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc---------chHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 357899999999999999999974 3789999999987642 25567799999999999999999885
Q ss_pred hHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccc
Q 042717 92 DEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQ 171 (474)
Q Consensus 92 ~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQ 171 (474)
... .+ .+ ...|.|..|+.++.+.+.. .++|+||||+| |+.+|++|+..++.+.+.
T Consensus 85 ~~~-------------~~--~~-~e~~AR~~Ry~~~~~~~~~--~~~l~~aHh~D-------Dq~ET~L~~L~rG~g~~g 139 (436)
T PRK10660 85 LDQ-------------RG--LG-IEAAARQARYQAFARTLLP--GEVLVTAQHLD-------DQCETFLLALKRGSGPAG 139 (436)
T ss_pred ccC-------------CC--CC-HHHHHHHHHHHHHHHHHHh--CCEEEEcCchH-------HHHHHHHHHHHcCCChhh
Confidence 311 01 11 1234566788887777765 36999999998 578999999988875432
Q ss_pred cccccccChh---hhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchH
Q 042717 172 TYFLSHLSQA---QLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFS 227 (474)
Q Consensus 172 syfL~~L~~~---~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~ 227 (474)
|.+|.+. .-..+++||.+++|+||.+||+++|+++.++++|++..|. ++..|
T Consensus 140 ---L~gm~~~~~~~~~~liRPLL~~~k~ei~~ya~~~~l~~~~D~sN~~~~~~-RN~iR 194 (436)
T PRK10660 140 ---LSAMAEVSPFAGTRLIRPLLARSREELEQYAQAHGLRWIEDDSNQDDRYD-RNFLR 194 (436)
T ss_pred ---ccccceecccCCCcEeCCCccCCHHHHHHHHHHcCCCEEECCCCCCCccc-cHHHH
Confidence 5555431 2236899999999999999999999999999999988774 33344
No 30
>PRK00919 GMP synthase subunit B; Validated
Probab=99.84 E-value=1.8e-20 Score=189.32 Aligned_cols=172 Identities=22% Similarity=0.311 Sum_probs=126.4
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
+++|+||+|||+||+++|+++++. |++|+++|++++.. ...|.+.++++|+.+ ++++++|+++.|..
T Consensus 21 ~~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~-----------~~~E~e~a~~~~~~~-i~~~vvd~~e~fl~ 88 (307)
T PRK00919 21 DGKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLM-----------RKGETERIKETFSDM-LNLRIVDAKDRFLD 88 (307)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCC-----------CHHHHHHHHHHHhcc-CCcEEEECCHHHHH
Confidence 479999999999999999999885 99999999998753 257899999999999 99999999876654
Q ss_pred hhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLS 176 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~ 176 (474)
.+ +.+ ......|..|.+ ..+..|.++|+++|+++|++||++++. .++ ++..+.+. -+.
T Consensus 89 ~L-----~~v--~npe~rr~~c~r-~~~~~~~~~A~~~g~~~Ia~Gtn~dD~-------iE~------r~~iks~~-nv~ 146 (307)
T PRK00919 89 AL-----KGV--TDPEEKRKIIGE-TFIRVFEEVAKEIGAEYLVQGTIAPDW-------IES------EGGIKSHH-NVG 146 (307)
T ss_pred hc-----cCC--CChHHhhhHHHH-HHHHHHHHHHHHcCCCEEEECCCCcch-------hhc------cCcccccc-ccc
Confidence 31 111 122345777887 447888999999999999999998742 121 01111111 123
Q ss_pred ccChhhhccccccccCCCHHHHHHHHHHcCCCCcC--CCCCcccccccc
Q 042717 177 HLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKD--RKDSQGICFLGK 223 (474)
Q Consensus 177 ~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~--k~~S~diCFl~~ 223 (474)
+++...-..+++||.+++|+||+++|+++|||.+. +....+.|+..+
T Consensus 147 gl~~~~~~~Ii~PL~~l~K~EVr~la~~lGLp~~~~~r~p~~~pcLa~R 195 (307)
T PRK00919 147 GLPEGMVLKIVEPLRDLYKDEVREVARALGLPEEISERMPFPGPGLAVR 195 (307)
T ss_pred ccChhhcCCcccCchhCcHHHHHHHHHHcCCChhhhCCCCCCCCceeEE
Confidence 34333223699999999999999999999999862 222236787654
No 31
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=99.84 E-value=2.1e-20 Score=194.78 Aligned_cols=175 Identities=19% Similarity=0.184 Sum_probs=130.5
Q ss_pred eEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEEEEcchHHHHhh
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEVVHLTDEYWKNV 98 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~vvd~~~~f~~~V 98 (474)
||+||+|||+||++++++|+++|++|+++|+++++ ..+|++.++++|+.+|+ +++++|++++|.++.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g~~V~av~id~Gq------------~~~e~~~a~~~a~~lGi~~~~viD~~~ef~~~~ 68 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQ------------PEEDIDAIPEKALEYGAENHYTIDAREEFVKDY 68 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEEEecCC------------ChHHHHHHHHHHHHhCCCeEEEEeCHHHHHHhh
Confidence 68999999999999999999999999999999863 14689999999999998 899999999888653
Q ss_pred HhhhHHHHhcCCCCCcccccc--------hHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCN--------TRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKD 170 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cn--------r~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kD 170 (474)
..+ . ...|.|..|. |.+.+..+.++|++.|+++|++||+... +|+.+ +.+.+.
T Consensus 69 ~~~---~----i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~g-----nDqvr--f~r~~~----- 129 (394)
T TIGR00032 69 GFA---A----IQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKG-----NDQER--FERSIR----- 129 (394)
T ss_pred chh---h----hcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCc-----chHHH--HHHHHH-----
Confidence 221 1 1235666553 4566888999999999999999998741 01111 111110
Q ss_pred ccccccccChhhhccccccc--cCCCHHHHHHHHHHcCCCCcC---CCCCcccccccccchHHHHHhh
Q 042717 171 QTYFLSHLSQAQLKRLIFPL--GCISKEEVRKFATQFDLPNKD---RKDSQGICFLGKIKFSEFVARH 233 (474)
Q Consensus 171 QsyfL~~L~~~~L~~~i~PL--~~ltK~EVr~lA~~~GLp~~~---k~~S~diCFl~~~~~~~fL~~~ 233 (474)
.+.+ .+ .+++|| .+++|+|++++|+++|||+.. +|.|.|..+++..-...+|++.
T Consensus 130 ------~~~~-~l-~viaPLrew~l~r~ei~~ya~~~Gip~~~~~~~pys~d~nl~G~s~e~~~Led~ 189 (394)
T TIGR00032 130 ------LLNP-DL-KVIAPWRDLNFTREEEIEYAIQCGIPYPMSKEKPYSIDENLWGRSIEAGILEDP 189 (394)
T ss_pred ------HhCC-CC-eEECchhhcCCCHHHHHHHHHHcCCCeeEecCCCCcCCHHHcCcEeccchhhCc
Confidence 0111 22 689999 679999999999999999852 5678887777765455566554
No 32
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.84 E-value=3.6e-20 Score=178.73 Aligned_cols=160 Identities=25% Similarity=0.415 Sum_probs=125.7
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
..||+||||||+|||++|.++++. |-+|.++|++.+.. ...+++.|+..|+++||.|.++++...
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~-----------p~~e~e~A~~~A~~iGi~H~~i~~~~~--- 82 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYI-----------PRREIEEAKNIAKEIGIRHEFIKMNRM--- 82 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCC-----------ChhhhhHHHHHHHHhCCcceeeehhhc---
Confidence 349999999999999999999765 99999999987532 356899999999999999999998631
Q ss_pred hhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLS 176 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~ 176 (474)
+ ++| .-+++|+|+.|.+.+ +..+.+.|.+.|+|+|+.|.++++.+.+ ++
T Consensus 83 ---~---~~~-~~n~~~rCY~CK~~v-~~~l~~~a~~~Gyd~V~dGtNasDl~~~-----RP------------------ 131 (269)
T COG1606 83 ---D---PEF-KENPENRCYLCKRAV-YSTLVEEAEKRGYDVVADGTNASDLFDY-----RP------------------ 131 (269)
T ss_pred ---c---hhh-ccCCCCcchHHHHHH-HHHHHHHHHHcCCCEEEeCCcHHHhcCC-----Cc------------------
Confidence 1 233 346899999999965 8999999999999999999999854311 11
Q ss_pred ccChhhhcccccccc--CCCHHHHHHHHHHcCCCCcCCCCCccccccccc
Q 042717 177 HLSQAQLKRLIFPLG--CISKEEVRKFATQFDLPNKDRKDSQGICFLGKI 224 (474)
Q Consensus 177 ~L~~~~L~~~i~PL~--~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~ 224 (474)
++.......+-.||. +++|+||+++|+.+|++++++|+ ..|...+.
T Consensus 132 G~rA~kE~gi~sPl~e~gitk~eIre~a~~lgl~~~~kp~--~aCl~sr~ 179 (269)
T COG1606 132 GLRALKELGIRSPLAEFGITKKEIREIAKSLGLPTWDKPS--MACLASRI 179 (269)
T ss_pred chhhHHhcCCCChHHHhCCcHHHHHHHHHHcCCCcccCcc--cccccccc
Confidence 111111124667876 67999999999999999998875 47887553
No 33
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.83 E-value=2.7e-20 Score=183.53 Aligned_cols=165 Identities=19% Similarity=0.262 Sum_probs=124.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
..++|+||+|||+||+++|+++++. |.++++++++.+. +.+..+.+.|+++|+.+||+++++++.+.|.
T Consensus 21 ~~~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~----------~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~ 90 (250)
T TIGR00552 21 GAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSV----------QTPEQDVQDALALAEPLGINYKNIDIAPIAA 90 (250)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCcc----------CCCHHHHHHHHHHHHHhCCeEEEEcchHHHH
Confidence 4578999999999999999999887 5589999887542 1246789999999999999999999987665
Q ss_pred HhhHhhhHHHHhcCCCC-----CcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccc
Q 042717 96 KNVVSYIIEEYRCGRTP-----NPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKD 170 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tp-----NPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kD 170 (474)
.. ..+....++ ..|..|.+ +|+..|..+|.+.|+.+|+|||+.+.. .+
T Consensus 91 ~~------~~~~~~~~~~~~~~~~~n~car-~R~~~L~~~A~~~g~~~laTgh~~E~~--------------~G------ 143 (250)
T TIGR00552 91 SF------QAQTETGDELSDFLAKGNLKAR-LRMAALYAIANKHNLLVLGTGNKSELM--------------LG------ 143 (250)
T ss_pred HH------HHHhccccCCchHHHHHHHHHH-HHHHHHHHHHHhcCCEEEcCCcHHHHh--------------hC------
Confidence 21 011111111 23666766 899999999999999999999997521 01
Q ss_pred ccccccccChhhhccccccccCCCHHHHHHHHHHcCCCC--cCCCCCccccccccc
Q 042717 171 QTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN--KDRKDSQGICFLGKI 224 (474)
Q Consensus 171 QsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~--~~k~~S~diCFl~~~ 224 (474)
|+.. .......++||++++|+||+++|+.+|+|. .++|.|+++ +.+..
T Consensus 144 --~~t~---~gd~~~~i~PL~~l~K~eV~~lA~~~g~p~~i~~k~psa~L-~~~q~ 193 (250)
T TIGR00552 144 --YFTK---YGDGGCDIAPIGDLFKTQVYELAKRLNVPERIIEKPPTADL-FDGQT 193 (250)
T ss_pred --Ceec---ccCCccCccccCCCcHHHHHHHHHHHCccHHHhCCCCCcCC-CCCCc
Confidence 1111 112335799999999999999999999995 689999887 44443
No 34
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=99.83 E-value=5.5e-20 Score=192.53 Aligned_cols=167 Identities=18% Similarity=0.172 Sum_probs=123.8
Q ss_pred CCCCCCCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC-----CCEE
Q 042717 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD-----VPLE 86 (474)
Q Consensus 12 ~~~~~~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG-----Ipl~ 86 (474)
++|...+.+++|++|||+||+|+|+++++.|++|.++|+..+.. .++.+.+.++++|+.|+ ++|+
T Consensus 170 GlP~g~~gkvvvllSGGiDS~vaa~l~~k~G~~v~av~~~~~~~----------~~~~~~~~~~~~a~~l~~~~~~i~~~ 239 (394)
T PRK01565 170 GLPVGTSGKALLLLSGGIDSPVAGYLAMKRGVEIEAVHFHSPPY----------TSERAKEKVIDLARILAKYGGRIKLH 239 (394)
T ss_pred CCccCCCCCEEEEECCChhHHHHHHHHHHCCCEEEEEEEeCCCC----------CcHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 67888899999999999999999999999999999999975321 13567788888888885 9999
Q ss_pred EEEcchHHHHhhHhhhHHHHhcCCCCCc--ccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhh
Q 042717 87 VVHLTDEYWKNVVSYIIEEYRCGRTPNP--DVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELS 164 (474)
Q Consensus 87 vvd~~~~f~~~V~~~~i~~y~~G~tpNP--ci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~ 164 (474)
++|+++.. ..+ . ...++. |+.|.+ +.+..+..+|++.|++.|+|||++++. ....+-.
T Consensus 240 vv~~~~~~-~~i--------~-~~~~~~~~~v~~Rr-~~~~~a~~~A~~~g~~~IvtG~~~~d~-------~sqt~~~-- 299 (394)
T PRK01565 240 VVPFTEIQ-EEI--------K-KKVPESYLMTLMRR-FMMRIADKIAEKRGALAIVTGESLGQV-------ASQTLES-- 299 (394)
T ss_pred EEECHHHH-HHH--------h-hcCCCceEEEeHHH-HHHHHHHHHHHHcCCCEEEEccccccc-------cHHHHHH--
Confidence 99997532 111 1 123443 888888 668999999999999999999999753 1111111
Q ss_pred cCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCCC-cCCCCCcccc
Q 042717 165 KDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN-KDRKDSQGIC 219 (474)
Q Consensus 165 ~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~-~~k~~S~diC 219 (474)
|..+....-..+++||.+++|+||+++|+++|+.. +.+| ++++|
T Consensus 300 ----------l~~i~~~~~~~V~rPLig~~K~EI~~lAr~iG~~~~s~~p-~~~cc 344 (394)
T PRK01565 300 ----------MYAINAVTNLPVLRPLIGMDKEEIIEIAKEIGTYDISILP-YEDCC 344 (394)
T ss_pred ----------HHHHhhccCcEEEECCCCCCHHHHHHHHHHhCCHHHhcCC-CcCee
Confidence 11111111136899999999999999999999843 4444 44556
No 35
>PRK14561 hypothetical protein; Provisional
Probab=99.82 E-value=2.4e-19 Score=170.54 Aligned_cols=175 Identities=18% Similarity=0.223 Sum_probs=124.3
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
+||+|++|||+||+++++++.+. ++|.++|+++++ ..+++.|+++|+.+|+|+++++++..+....
T Consensus 1 mkV~ValSGG~DSslll~~l~~~-~~v~a~t~~~g~-------------~~e~~~a~~~a~~lGi~~~~v~~~~~~~~~~ 66 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF-YDVELVTVNFGV-------------LDSWKHAREAAKALGFPHRVLELDREILEKA 66 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc-CCeEEEEEecCc-------------hhHHHHHHHHHHHhCCCEEEEECCHHHHHHH
Confidence 58999999999999999999888 889999998753 2468899999999999999999988665543
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHL 178 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L 178 (474)
.+. .+. ...||..|+. ++..++..++ .|+++||+||++++ ..++..+.. +..+
T Consensus 67 ~~~---~~~---~~~P~~~~~~-l~~~~l~~~a--~g~~~Ia~G~n~DD-------~~et~~r~~-----------~~a~ 119 (194)
T PRK14561 67 VDM---IIE---DGYPNNAIQY-VHEHALEALA--EEYDVIADGTRRDD-------RVPKLSRSE-----------IQSL 119 (194)
T ss_pred HHH---HHH---cCCCCchhHH-HHHHHHHHHH--cCCCEEEEEecCCC-------cchhccHHH-----------Hhhh
Confidence 321 122 2457888885 5445555555 89999999999984 233322221 1122
Q ss_pred ChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccCCC
Q 042717 179 SQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEG 239 (474)
Q Consensus 179 ~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~~G 239 (474)
....-..+++||.+++|+||+++|+++ |....-++. -+++.+|..-|+..+..+-|
T Consensus 120 ~~~~gi~iirPL~~~~K~eI~~la~~l-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 175 (194)
T PRK14561 120 EDRKGVQYIRPLLGFGRKTIDRLVERL-FEIEEGESE----EIPKSDYETELRELLRERGG 175 (194)
T ss_pred hcCCCcEEEeeCCCCCHHHHHHHHHhh-EEEEeccCC----CcCccchHHHHHHHHHHhCC
Confidence 211112579999999999999999997 333333322 25678898888877654433
No 36
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=99.80 E-value=1.4e-19 Score=171.95 Aligned_cols=168 Identities=21% Similarity=0.202 Sum_probs=97.3
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHc----CCCEEEEEcch
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQV----DVPLEVVHLTD 92 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~L----GIpl~vvd~~~ 92 (474)
...|+++++|||+||.||+++++++|.+|.++||+.+...+ ....+..+.+.+....+ .++++++|+.+
T Consensus 2 t~gk~l~LlSGGiDSpVAa~lm~krG~~V~~l~f~~~~~~~-------~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~ 74 (197)
T PF02568_consen 2 TQGKALALLSGGIDSPVAAWLMMKRGCEVIALHFDSPPFTG-------EKAREKVEELAEKLSEYSPGHKIRLYVVDFTE 74 (197)
T ss_dssp TT-EEEEE-SSCCHHHHHHHHHHCBT-EEEEEEEE-TTTSS-------CCCHHHHHHHHHHHHCCSTTS-EEEEEECHHH
T ss_pred CCceEEEEecCCccHHHHHHHHHHCCCEEEEEEEECCCCCC-------HHHHHHHHHHHHHHHHhCCCcceeEEEECcHH
Confidence 35689999999999999999999999999999999643221 11223333333333333 36888899876
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
.+.. +. . .....|||+.|.+.| ++...++|++.|+++|+||....++ ++|.. ++
T Consensus 75 ~~~~-i~----~---~~~~~~~ci~ckr~M-~r~A~~ia~~~ga~~IvTGEsLGQv--aSQTl-~n-------------- 128 (197)
T PF02568_consen 75 VQKE-IL----R---GVKERNPCIDCKRFM-YRIAEEIAEEEGADAIVTGESLGQV--ASQTL-EN-------------- 128 (197)
T ss_dssp HHHH-HH----H---HS-GGGHHHHHHHHH-HHHHHHHHHHTT--EEE----SSST--TS--H-HH--------------
T ss_pred HHHH-HH----h---cCCccchhHHHHHHH-HHHHHHHHHHCCCCEEEeCchhHHH--HhhhH-HH--------------
Confidence 4432 22 1 224568999999977 7888999999999999999999865 22210 11
Q ss_pred ccccccChhhhccccccccCCCHHHHHHHHHHcCCCCc-CCCCCcccccc
Q 042717 173 YFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK-DRKDSQGICFL 221 (474)
Q Consensus 173 yfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~-~k~~S~diCFl 221 (474)
|..+....-..++|||.+++|+||.++|++.|.-.. ..|. +.|-+
T Consensus 129 --L~~i~~~~~~pIlRPLig~dK~EIi~~Ar~Igtye~S~~~~--~~C~~ 174 (197)
T PF02568_consen 129 --LRVIESASDLPILRPLIGFDKEEIIEIARKIGTYEISIRPY--DCCSL 174 (197)
T ss_dssp --HHHHGGG--S-EE-TTTT--HHHHHHHHHHTT-HHHHTS---------
T ss_pred --HhhhhcccCCceeCCcCCCCHHHHHHHHHHhCchhhhcCCC--Cccee
Confidence 111111111269999999999999999999997432 3443 77854
No 37
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.80 E-value=7.8e-19 Score=167.45 Aligned_cols=168 Identities=17% Similarity=0.182 Sum_probs=114.4
Q ss_pred EEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchH--HHHhh
Q 042717 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDE--YWKNV 98 (474)
Q Consensus 21 VlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~--f~~~V 98 (474)
++|++|||+||+++++++++.|++|.+++++++.. +..+.+.++++|+++|+++++++++.. |....
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~g~~v~~~~~~~~~~-----------~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~ 69 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDEGYEVHAITFDYGQR-----------HSRELESARKIAEALGIEHHVIDLSLLKQLGGSA 69 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHcCCcEEEEEEECCCC-----------CHHHHHHHHHHHHHhCCCeEEEechhhccccccc
Confidence 58999999999999999999999999999987531 356899999999999999999998731 11100
Q ss_pred Hh-----hhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccc
Q 042717 99 VS-----YIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTY 173 (474)
Q Consensus 99 ~~-----~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsy 173 (474)
+. ...........+..|+.|...+.+..+..+|+++|++.|++||++++...++|. ..+++..... ..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~-~~~f~~~~~~--~~~--- 143 (201)
T TIGR00364 70 LTDESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDC-RDEFVKAFNH--ALN--- 143 (201)
T ss_pred ccCCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCC-cHHHHHHHHH--HHH---
Confidence 00 000000000123445556655545888899999999999999999875444332 2332222111 000
Q ss_pred cccccChhhhccccccccCCCHHHHHHHHHHcC---CCC
Q 042717 174 FLSHLSQAQLKRLIFPLGCISKEEVRKFATQFD---LPN 209 (474)
Q Consensus 174 fL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~G---Lp~ 209 (474)
+. .... .++++||.+++|.||+++|+++| +++
T Consensus 144 -~~--~~~~-~~i~~Pl~~~~K~eI~~la~~~g~~~~~~ 178 (201)
T TIGR00364 144 -LG--MLTP-VKIRAPLMDLTKAEIVQLADELGVLDLVI 178 (201)
T ss_pred -hh--cCCC-eEEEECCcCCCHHHHHHHHHHcCCccccH
Confidence 00 0111 36899999999999999999999 654
No 38
>PLN02347 GMP synthetase
Probab=99.79 E-value=4e-19 Score=191.81 Aligned_cols=181 Identities=20% Similarity=0.301 Sum_probs=125.6
Q ss_pred CCCeEEEEEccchhHHHHHHHHHH-cCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHS-AGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke-~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
+.++|+||+||||||+|+|+++++ .|.++++++++++... ..+..+.++.+|+.+||+++++|+++.|.
T Consensus 228 ~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~----------~~E~~~~~~~~a~~lgi~~~vvd~~e~fl 297 (536)
T PLN02347 228 PDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLR----------YKEQERVMETFKRDLHLPVTCVDASERFL 297 (536)
T ss_pred cCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCC----------hhHHHHHHHHHHHHcCCcEEEEeCcHHHH
Confidence 357899999999999999999999 5999999999987531 22334445889999999999999998776
Q ss_pred HhhHhhhHHHHhcCC--CCCcccccch---HHHHHHHH-HHHHHcCC--CEEEEceecccccCccCCCchhhHHh-hhcC
Q 042717 96 KNVVSYIIEEYRCGR--TPNPDVLCNT---RIKFGAFM-DAISSMEF--DYVASGHYAKVVHSSADQEYKPSVLE-LSKD 166 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~--tpNPci~Cnr---~iKf~~l~-~~A~~~Ga--d~IATGH~a~~~~~~~dd~~~~~~L~-~~~d 166 (474)
..+ .|- +++-|..|.+ .+ |..+. +++.++|. ++++.|+++++.-. ...+.-+. ...+
T Consensus 298 ~~l---------~~~~~pe~k~~~~~~~f~~~-f~~~~~~~~~~~~~~~~~l~qGt~~~D~~e----s~~r~g~~~~~~~ 363 (536)
T PLN02347 298 SKL---------KGVTDPEKKRKIIGAEFIEV-FDEFAHKLEQKLGKKPAFLVQGTLYPDVIE----SCPPPGSGRTHSH 363 (536)
T ss_pred hhC---------CCCCChHHhcchhCchHHHH-HHHHHHHHHHhhCCCCcEEccCCccccccc----ccCCCCCcccccc
Confidence 531 233 3445788887 32 44443 44545555 99999998764310 00000000 0011
Q ss_pred CcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCC---CcCCCCCcccccccc
Q 042717 167 KVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP---NKDRKDSQGICFLGK 223 (474)
Q Consensus 167 ~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp---~~~k~~S~diCFl~~ 223 (474)
..|.. .-.++|++..+.++++||++++|+|||++|+++||| .+.+|-+ +.|+..+
T Consensus 364 ~ik~h-hn~~~l~~~~~~~ii~PL~~l~K~eVR~la~~lgl~~~~~~~~p~p-~p~La~R 421 (536)
T PLN02347 364 TIKSH-HNVGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRHPFP-GPGLAVR 421 (536)
T ss_pred ceeee-cccccChHHHHCccccchhhCcHHHHHHHHHHcCCCHHHhcCCCcC-CCCEEee
Confidence 12211 124667888888999999999999999999999999 6666554 6787654
No 39
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.77 E-value=6.4e-18 Score=164.61 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=120.4
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCC-EEEEEcchH--HH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP-LEVVHLTDE--YW 95 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIp-l~vvd~~~~--f~ 95 (474)
+|++|++|||+||+++|+++++.|++|+++++++++. +..|++.|+++|+.+||+ |+++|++.. +.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~~~~v~alt~dygq~-----------~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~ 70 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQYDEVHCVTFDYGQR-----------HRAEIDVARELALKLGARAHKVLDVTLLNELA 70 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhcCCeEEEEEEEeCCC-----------CHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 4799999999999999999988888999999998753 357999999999999996 999998731 11
Q ss_pred HhhH-hh--hHHHHh--cCCCCCcccccchHHHHHHHHH-HHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcc
Q 042717 96 KNVV-SY--IIEEYR--CGRTPNPDVLCNTRIKFGAFMD-AISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVK 169 (474)
Q Consensus 96 ~~V~-~~--~i~~y~--~G~tpNPci~Cnr~iKf~~l~~-~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~k 169 (474)
...+ +. -++++. ....|+.|+.|...+ |-.+.. +|.+.|++.|++|-++++...++|... . ++......
T Consensus 71 ~s~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~l-flslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~-~-Fi~A~~~~-- 145 (231)
T PRK11106 71 VSSLTRDSIPVPDYEPEADGLPNTFVPGRNIL-FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRD-E-FVKALNHA-- 145 (231)
T ss_pred ccccccccccCCccccccCCCCCEEEecHHHH-HHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCH-H-HHHHHHHH--
Confidence 1111 10 011111 234678898887754 655554 899999999999999987655655322 2 22221000
Q ss_pred cccccccccChhhhccccccccCCCHHHHHHHHHHcC-CCC
Q 042717 170 DQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFD-LPN 209 (474)
Q Consensus 170 DQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~G-Lp~ 209 (474)
.-+. +. .. ..+..||.+++|.||+++++++| +|+
T Consensus 146 ---~~~~-~~-~~-i~I~aPl~~lsK~eI~~l~~~lg~v~~ 180 (231)
T PRK11106 146 ---VSLG-MA-KD-IRFETPLMWLNKAETWALADYYGQLDL 180 (231)
T ss_pred ---HHhc-cC-CC-cEEEecCCCCCHHHHHHHHHHcCCccc
Confidence 0011 11 12 47999999999999999999999 776
No 40
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.76 E-value=4.3e-18 Score=167.70 Aligned_cols=163 Identities=20% Similarity=0.254 Sum_probs=123.6
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc-C-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA-G-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~-G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
+.++|+|++|||+||+++|+++++. | .+|++++|..+.. +..+.++|+++|+.+||+++++++.+.|
T Consensus 22 ~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~-----------~~~~~~~a~~~a~~lgi~~~~i~i~~~~ 90 (248)
T cd00553 22 GFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYS-----------SEETREDAKELAEALGIEHVNIDIDPAV 90 (248)
T ss_pred CCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCC-----------CHHHHHHHHHHHHHhCCeEEEeccHHHH
Confidence 4568999999999999999999887 4 7999999986531 3578999999999999999999998765
Q ss_pred HHhhHhhhHHHHh--cCCCCCcccccch--HHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccc
Q 042717 95 WKNVVSYIIEEYR--CGRTPNPDVLCNT--RIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKD 170 (474)
Q Consensus 95 ~~~V~~~~i~~y~--~G~tpNPci~Cnr--~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kD 170 (474)
... ..... .+.+++++..||- ++|+..|+.+|.+.|+.+++|||+.... + +
T Consensus 91 ~~~-----~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn~~E~~------------~--G------ 145 (248)
T cd00553 91 EAF-----LALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGNKSELL------------L--G------ 145 (248)
T ss_pred HHH-----HHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCcHhHHH------------h--C------
Confidence 432 12221 2345666666664 4778889999999999999999975321 0 0
Q ss_pred ccccccccChhhhccccccccCCCHHHHHHHHHHcCCCC--cCCCCCccccc
Q 042717 171 QTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN--KDRKDSQGICF 220 (474)
Q Consensus 171 QsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~--~~k~~S~diCF 220 (474)
||.. .. .....++||++++|.||+++|+.+|+|. .+++.|.+.+.
T Consensus 146 --~~t~--~g-d~~~~i~Pl~~l~K~eV~~la~~~~ip~~i~~k~psa~l~~ 192 (248)
T cd00553 146 --YFTK--YG-DGAADINPIGDLYKTQVRELARYLGVPESIIDKPPSAELWP 192 (248)
T ss_pred --Ceec--cC-CcccCccccCCCcHHHHHHHHHHHCchHHHhcCCCCcccCC
Confidence 1110 01 1135889999999999999999999995 57888888764
No 41
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.76 E-value=1.1e-17 Score=152.64 Aligned_cols=159 Identities=19% Similarity=0.212 Sum_probs=116.1
Q ss_pred eEEEEEccchhHHHHHHHHHHcCC---cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGH---SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~---eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
+|+|++|||+||+++|+++.+.+. ++.++|++++.. .++..+.++++|+.+|+++++++....+..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 69 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYE-----------FPETYEFVDRVAERYGLPLVVVRPPDSPAE 69 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCC-----------CHHHHHHHHHHHHHhCCCeEEECCCccHHH
Confidence 589999999999999999999866 899999998642 467889999999999999999988754332
Q ss_pred hhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLS 176 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~ 176 (474)
... ...+..+...+.+-.|.+.+|...+.+++++.+.+.+++||++++ ..++..+... .
T Consensus 70 ~~~---~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de-------~~~r~~~~~~-----------~ 128 (173)
T cd01713 70 GLA---LGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDE-------SARRALLPVV-----------W 128 (173)
T ss_pred HHH---HhhhccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEecccc-------chhhhhCccc-----------c
Confidence 100 111122222233445666789999999999999999999999974 2333322221 0
Q ss_pred ccChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 177 HLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 177 ~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
......-...++||.+|+++||+++++++|+|+.
T Consensus 129 ~~~~~~~~~~~~Pl~~w~~~di~~~~~~~~l~~~ 162 (173)
T cd01713 129 TDDGKGGILKVNPLLDWTYEDVWAYLARHGLPYN 162 (173)
T ss_pred ccCCCCCcEEEcchhcCCHHHHHHHHHHcCCCCC
Confidence 0111111368999999999999999999999873
No 42
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.75 E-value=1.6e-17 Score=153.75 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=100.9
Q ss_pred eEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVV 99 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~ 99 (474)
||+|++|||+||++++++|+++|++|.++|++++.. +..+.+.++++|+.+| |+..++
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~g-~~~~~~---------- 58 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFDYGQR-----------HAKEEEAAKLIAEKLG-PSTYVP---------- 58 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcCCcEEEEEEECCCC-----------ChhHHHHHHHHHHHHC-CCEEEe----------
Confidence 689999999999999999999999999999987532 2346789999999999 443332
Q ss_pred hhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccC
Q 042717 100 SYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLS 179 (474)
Q Consensus 100 ~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~ 179 (474)
|+..+.+..+.++|.+.|++.|++||++++...+.+ ...++ +.... + +..+.
T Consensus 59 ------------------~~~~~~~~~l~~~a~~~g~~~i~~G~~~~d~~~~~~-~~~~~-~~~~~-----~---~~~~~ 110 (169)
T cd01995 59 ------------------ARNLIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPD-CRPEF-IEAMN-----K---ALNLG 110 (169)
T ss_pred ------------------CcCHHHHHHHHHHHHHCCCCEEEEeeccCccCCCCC-CCHHH-HHHHH-----H---HHHhh
Confidence 222234567788999999999999999976422221 11221 11100 0 00011
Q ss_pred hhhhccccccccCCCHHHHHHHHHHcCCCCcC
Q 042717 180 QAQLKRLIFPLGCISKEEVRKFATQFDLPNKD 211 (474)
Q Consensus 180 ~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~ 211 (474)
.....++++||.+++|.||+++++++|+|+..
T Consensus 111 ~~~~~~v~~PL~~~~K~ei~~~~~~~g~~~~~ 142 (169)
T cd01995 111 TENGIKIHAPLIDLSKAEIVRLGGELGVPLEL 142 (169)
T ss_pred cCCCeEEEeCcccCCHHHHHHHHhHcCCChhh
Confidence 12223789999999999999999999998753
No 43
>PRK13980 NAD synthetase; Provisional
Probab=99.75 E-value=1.1e-17 Score=166.35 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=116.9
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc--CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA--GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~--G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
.++|+|++|||+||+++|+++.+. +.+|++++++++. .+..+.++|+.+|+.+||+++++++++.+.
T Consensus 30 ~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~-----------~~~~~~~~a~~la~~lgi~~~~i~i~~~~~ 98 (265)
T PRK13980 30 AKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSV-----------SPPEDLEDAELVAEDLGIEYKVIEITPIVD 98 (265)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCC-----------CCHHHHHHHHHHHHHhCCCeEEEECHHHHH
Confidence 468999999999999999999886 4799999998753 245789999999999999999999975332
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFL 175 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL 175 (474)
. +............|..|.| +|+..|+.+|.+.|+.++.||+.... ..+ ||
T Consensus 99 ~-----~~~~~~~~~~~~~~n~~aR-~R~~~L~~~A~~~g~lvlgTgn~sE~--------------~~G--------~~- 149 (265)
T PRK13980 99 A-----FFSAIPDADRLRVGNIMAR-TRMVLLYDYANRENRLVLGTGNKSEL--------------LLG--------YF- 149 (265)
T ss_pred H-----HHHHcccccchHHHHHHHH-HHHHHHHHHHhhcCCEEEcCCCHhHH--------------HhC--------Cc-
Confidence 1 1111111112234667776 78899999999999999989864321 111 11
Q ss_pred cccChhhhccccccccCCCHHHHHHHHHHcCCC--CcCCCCCccc
Q 042717 176 SHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP--NKDRKDSQGI 218 (474)
Q Consensus 176 ~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp--~~~k~~S~di 218 (474)
.........+.||++++|.||+++|+.+|+| .++++.|.++
T Consensus 150 --t~~gD~~~~l~Pl~~l~K~eV~~la~~lgip~~i~~k~psa~L 192 (265)
T PRK13980 150 --TKYGDGAVDLNPIGDLYKTQVRELARHLGVPEDIIEKPPSADL 192 (265)
T ss_pred --cCCCCcccCcccCCCCcHHHHHHHHHHHCchHHHhCCCCCcCC
Confidence 0011123468999999999999999999999 5778887653
No 44
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.72 E-value=6.4e-17 Score=173.59 Aligned_cols=188 Identities=15% Similarity=0.164 Sum_probs=125.0
Q ss_pred CCCCCCCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCH-HhHHHHHHHHHHcC----CCEE
Q 042717 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWE-EDMKYAKAVCDQVD----VPLE 86 (474)
Q Consensus 12 ~~~~~~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~-~d~~~a~~va~~LG----Ipl~ 86 (474)
++|.....|++|++|||+||+||+++|++.|++|.++|++++... +. ...+.++.+|+.++ ++++
T Consensus 171 GlP~g~~gk~lvllSGGiDS~va~~~~~krG~~v~~l~f~~g~~~----------~~~~~~~~a~~l~~~~~~~~~~~l~ 240 (482)
T PRK01269 171 GFPLGTQEDVLSLISGGFDSGVASYMLMRRGSRVHYCFFNLGGAA----------HEIGVKQVAHYLWNRYGSSHRVRFI 240 (482)
T ss_pred CCCccccCeEEEEEcCCchHHHHHHHHHHcCCEEEEEEEecCCch----------hHHHHHHHHHHHHHHhCccCCceEE
Confidence 678888999999999999999999999999999999999986431 22 25777877777665 5688
Q ss_pred EEEcchHHHHhhHhhhHHHHhcCCCCCcc-cccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhc
Q 042717 87 VVHLTDEYWKNVVSYIIEEYRCGRTPNPD-VLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSK 165 (474)
Q Consensus 87 vvd~~~~f~~~V~~~~i~~y~~G~tpNPc-i~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~ 165 (474)
++++.+.+. .+.. ......| +.|+|.| +.....+|++.|++.|+|||+.++. ....+.+...
T Consensus 241 ~v~~~~~~~-~i~~--------~~~~~~~~~v~rR~m-l~iA~~~A~~~ga~~IvtG~~l~dv-------asqtl~nl~~ 303 (482)
T PRK01269 241 SVDFEPVVG-EILE--------KVDDGQMGVVLKRMM-LRAASKVAERYGIQALVTGEALGQV-------SSQTLTNLRL 303 (482)
T ss_pred EEecHHHHH-HHHh--------cCCCceecHHHHHHH-HHHHHHHHHHcCCCEEEECcChHhh-------hhHHHHHHHh
Confidence 888876544 2211 1111222 2555533 5555778999999999999999853 2222333211
Q ss_pred CCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccc-c-ccchHHHHHhhhccCCC
Q 042717 166 DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFL-G-KIKFSEFVARHIGEMEG 239 (474)
Q Consensus 166 d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl-~-~~~~~~fL~~~~~~~~G 239 (474)
+....-..+++||..++|+||.++|++.|++....+-. +.|-. + +...+.++.+.....|+
T Consensus 304 ------------~~~~~~~~v~rPLi~~dK~EIi~~a~~ig~~~~s~~~p-~~C~~~~~~p~~~~~~~~~~~~~~~ 366 (482)
T PRK01269 304 ------------IDNVTDTLILRPLIAMDKEDIIDLAREIGTEDFAKTMP-EYCGVISKKPTVKAVKEKIEAEEKK 366 (482)
T ss_pred ------------hhhhcCCceecCCcCCCHHHHHHHHHHhCChhhcccCC-CCceeeCCCCcCCCCHHHHHHHhhc
Confidence 11111135789999999999999999999743322111 34532 2 33455566655444444
No 45
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.70 E-value=6e-17 Score=155.81 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=98.9
Q ss_pred eEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEEEEcch--HHHH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEVVHLTD--EYWK 96 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~vvd~~~--~f~~ 96 (474)
|++|++|||+||+++|+++++.|++|+++++++++. +..|++.|+++|+.||+ +|+++|++. ++..
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~~~v~al~~~YGq~-----------~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~ 69 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEGYEVYALTFDYGQR-----------HRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGG 69 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESSST-----------TCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSC
T ss_pred CEEEEeCCCHHHHHHHHHHHHcCCeEEEEEEECCCC-----------CHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCC
Confidence 789999999999999999999999999999999864 35889999999999999 999999983 1111
Q ss_pred -hhHhhh--HHH--HhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccc
Q 042717 97 -NVVSYI--IEE--YRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKD 170 (474)
Q Consensus 97 -~V~~~~--i~~--y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kD 170 (474)
.+++.. +++ +.....|+ -++-+|++-| .+...+|...|++.|++|.++++...++|.. ..+ +......
T Consensus 70 s~L~~~~~~v~~~~~~~~~~~~-t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~-~~F-~~~~~~~--- 143 (209)
T PF06508_consen 70 SALTDDSIEVPEEEYSEESIPS-TYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCR-PEF-IDAMNRL--- 143 (209)
T ss_dssp HHHHHTT-------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGS-HHH-HHHHHHH---
T ss_pred CcccCCCcCCcccccccCCCCc-eEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCCh-HHH-HHHHHHH---
Confidence 222221 111 22222222 2334555544 5556689999999999999998754455432 222 2211100
Q ss_pred ccccccccChhhhccccccccCCCHHHHHHHHHHcCCCC
Q 042717 171 QTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN 209 (474)
Q Consensus 171 QsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~ 209 (474)
+. +....-.++..||.+++|.||.+++.++|+|.
T Consensus 144 ----~~-~~~~~~v~i~~P~~~~tK~eiv~~~~~lg~~~ 177 (209)
T PF06508_consen 144 ----LN-LGEGGPVRIETPLIDLTKAEIVKLGVELGVPL 177 (209)
T ss_dssp ----HH-HHHTS--EEE-TTTT--HHHHHHHHHHTTHHH
T ss_pred ----HH-hcCCCCEEEEecCCCCCHHHHHHHHHHcCCCH
Confidence 11 01112247999999999999999999999765
No 46
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.69 E-value=2.4e-16 Score=151.05 Aligned_cols=169 Identities=20% Similarity=0.242 Sum_probs=120.1
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch--HHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD--EYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~--~f~ 95 (474)
.+|.+|.+|||.||+++|+++++.+++|++++|++++. +..|++.|+++|++||||++++|++- .+.
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~~~~ev~alsfdYGQr-----------h~~Ele~A~~iak~lgv~~~iid~~~~~~~~ 70 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKKEGYEVHALTFDYGQR-----------HRKELEAAKELAKKLGVPHHIIDVDLLGEIG 70 (222)
T ss_pred CceEEEEccCChhHHHHHHHHHhcCCEEEEEEeeCCCC-----------cHHHHHHHHHHHHHcCCCeEEechhHHhhcC
Confidence 47899999999999999999999999999999999864 36899999999999999999999863 121
Q ss_pred -HhhHhhh--HHHHhc-CC-CCCcccccchHHHH-HHHHHHHHHcCCCEEEEceecccccCccCCCchhh-HHhhhcCCc
Q 042717 96 -KNVVSYI--IEEYRC-GR-TPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPS-VLELSKDKV 168 (474)
Q Consensus 96 -~~V~~~~--i~~y~~-G~-tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~-~L~~~~d~~ 168 (474)
....+.- ++.+.. +. .|+.-+ -+|++-| .....+|..+|++.|++|-+..+...++|...+.. .++....
T Consensus 71 ~saLtd~~~~vp~~~~~~~~~p~t~V-P~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~sgYPDcrpefi~a~~~~~~-- 147 (222)
T COG0603 71 GSALTDDSIDVPKYEFAEEEIPATFV-PARNLIFLSIAAAYAEALGADAIIIGVNEEDFSGYPDCRPEFIEALNEALN-- 147 (222)
T ss_pred CCcCcCCCccccccccccccCcceEe-ccccHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCCCHHHHHHHHHHHH--
Confidence 1122221 222221 11 244343 3444444 55567899999999999999988777777543321 1111110
Q ss_pred ccccccccccChhhhcc-ccccccCCCHHHHHHHHHHcCCCC
Q 042717 169 KDQTYFLSHLSQAQLKR-LIFPLGCISKEEVRKFATQFDLPN 209 (474)
Q Consensus 169 kDQsyfL~~L~~~~L~~-~i~PL~~ltK~EVr~lA~~~GLp~ 209 (474)
|... .. .+ +..||.+++|.|+.+++.++|.|.
T Consensus 148 ------l~~~--~~-~~~i~aPl~~l~Ka~iv~l~~elg~~~ 180 (222)
T COG0603 148 ------LGTE--KG-VRIIHAPLMELTKAEIVKLADELGVPL 180 (222)
T ss_pred ------hhcc--CC-ccEEeCCeeeccHHHHHHHHHHhCCcc
Confidence 1111 11 23 689999999999999999999876
No 47
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=99.67 E-value=7.8e-16 Score=156.42 Aligned_cols=179 Identities=24% Similarity=0.287 Sum_probs=136.8
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcC-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCC-EEEEEcchHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAG-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVP-LEVVHLTDEY 94 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIp-l~vvd~~~~f 94 (474)
..+||++|+|||+|+||++.+|++.| ++|++++.+.++. .+|++.+++-|..+|.. ++++|++++|
T Consensus 3 ~~kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~------------eed~~~i~eKA~~~Ga~~~~viD~reeF 70 (403)
T COG0137 3 KVKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP------------EEDLDAIREKALELGAEEAYVIDAREEF 70 (403)
T ss_pred CCcEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCC------------hHHhHHHHHHHHHhCCceEEEeecHHHH
Confidence 35799999999999999999999996 9999999999752 47899999999999985 9999999999
Q ss_pred HHhhHhhhHHH---HhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccc
Q 042717 95 WKNVVSYIIEE---YRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQ 171 (474)
Q Consensus 95 ~~~V~~~~i~~---y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQ 171 (474)
.++.+.+.+.. | .|..|+--.+....| -..+.++|++.|+++|+.|.+.. +.||
T Consensus 71 ~~~yi~~~i~ana~Y-eg~YpL~TalaRPLI-ak~lVe~A~k~ga~avaHGcTGK---------------------GNDQ 127 (403)
T COG0137 71 VEDYIFPAIKANALY-EGVYPLGTALARPLI-AKKLVEAAKKEGADAVAHGCTGK---------------------GNDQ 127 (403)
T ss_pred HHHHHHHHHHhhcee-eccccccchhhHHHH-HHHHHHHHHHcCCCEEEecCCCC---------------------CCce
Confidence 98766665542 3 244555555544434 67889999999999999887642 4566
Q ss_pred cccccc---cChhhhcccccccc--CCCHHHHHHHHHHcCCCCc---CCCCCcccccccccchHHHHHh
Q 042717 172 TYFLSH---LSQAQLKRLIFPLG--CISKEEVRKFATQFDLPNK---DRKDSQGICFLGKIKFSEFVAR 232 (474)
Q Consensus 172 syfL~~---L~~~~L~~~i~PL~--~ltK~EVr~lA~~~GLp~~---~k~~S~diCFl~~~~~~~fL~~ 232 (474)
-.|-.. |.++ .+++.|.. +++|++..+||+++|+|+. ++|-|.|...+++..-...|++
T Consensus 128 vRFe~~~~al~p~--lkiiAP~Rew~~~R~~~i~Ya~~~gipv~~~~~kpySiD~Nlwg~S~Egg~LEd 194 (403)
T COG0137 128 VRFELAILALNPD--LKIIAPWREWNLTREEEIEYAEEHGIPVKATKEKPYSIDENLWGRSIEGGDLED 194 (403)
T ss_pred eeeeeehhhhCCC--cEEEeehhhhccChHHHHHHHHHcCCCccccCCCCcccchhhhccccccccccC
Confidence 655322 2222 37889965 6789999999999999984 3588888887765433344444
No 48
>PRK05370 argininosuccinate synthase; Validated
Probab=99.67 E-value=4.9e-16 Score=161.70 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=129.1
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEEEEcchHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEVVHLTDEYW 95 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~vvd~~~~f~ 95 (474)
+++||++|+|||.|||+++.+|++.|++|++++.+.++. ..+|++.+++-|..+|. +++++|++++|.
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~-----------~~ed~~~i~~kA~~~GA~~~~viDlr~eF~ 78 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQP-----------DEDDYDAIPRRAMEYGAENARLIDCRAQLV 78 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCC-----------CccchHHHHHHHHHhCCCEEEEeccHHHHH
Confidence 568999999999999999999999999999999999742 13578899999999999 799999999999
Q ss_pred HhhHhhhHHH---H---hcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcc
Q 042717 96 KNVVSYIIEE---Y---RCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVK 169 (474)
Q Consensus 96 ~~V~~~~i~~---y---~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~k 169 (474)
++.+ +.+.. | ..|..|+....... +--..+.++|++.||++||.|-... ++
T Consensus 79 e~~i-~aI~anA~Y~~~~e~~Y~l~t~LaRp-lia~~lv~~A~~~ga~aIAHG~TGK---------------------GN 135 (447)
T PRK05370 79 AEGI-AAIQCGAFHISTGGVTYFNTTPLGRA-VTGTMLVAAMKEDGVNIWGDGSTYK---------------------GN 135 (447)
T ss_pred HHHH-HHHHcCCccccccCccccCCCcchHH-HHHHHHHHHHHHhCCcEEEEcCCCC---------------------CC
Confidence 9877 76653 2 13344444444333 3357789999999999999887643 23
Q ss_pred cccccc---cccChhhhccccccccCC-------CHHHHHHHHHHcCCCCcC---CCCCcccccccc
Q 042717 170 DQTYFL---SHLSQAQLKRLIFPLGCI-------SKEEVRKFATQFDLPNKD---RKDSQGICFLGK 223 (474)
Q Consensus 170 DQsyfL---~~L~~~~L~~~i~PL~~l-------tK~EVr~lA~~~GLp~~~---k~~S~diCFl~~ 223 (474)
||-.|= ..|.++ ..++.|..++ +|+|..+||+++|+|... +|-|.|...++.
T Consensus 136 DQvRFE~~~~aL~P~--l~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~~~~~~~ySiD~NLwg~ 200 (447)
T PRK05370 136 DIERFYRYGLLTNPE--LKIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYKMSVEKAYSTDSNMLGA 200 (447)
T ss_pred chHHHHHHHHHhCCC--CeEecchhhhhcccccCCHHHHHHHHHHcCCCCCccCCCCccCccChhee
Confidence 444432 122222 2688998764 899999999999999642 366777666654
No 49
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.65 E-value=1.9e-15 Score=152.63 Aligned_cols=165 Identities=18% Similarity=0.152 Sum_probs=115.7
Q ss_pred CeEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
.+++|++|||+||+|+++++++. +.++.++|++++.. .++.++++.++|+.+|++++++...+.+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~-----------FpEt~ef~d~~a~~~gl~l~v~~~~~~i 96 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWK-----------FPEMIEFRDRRAKELGLELIVHSNPEGI 96 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCC-----------CHHHHHHHHHHHHHhCCCEEEEeChHHH
Confidence 57999999999999999999987 45789999998642 3577899999999999999998765322
Q ss_pred HHhhHhhhHHHHhcCC---CCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhh---hcCCc
Q 042717 95 WKNVVSYIIEEYRCGR---TPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLEL---SKDKV 168 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~---tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~---~~d~~ 168 (474)
. .|. ..++|..|+. +|...|.+++++.|++.+++||+.++.... ..++++..+ .....
T Consensus 97 ~------------~g~~~~~~~~~~cC~~-lK~~pL~~al~e~g~da~~~G~RrDE~~~R---a~e~~fs~r~~~~~wd~ 160 (301)
T PRK05253 97 A------------RGINPFRHGSAKHTNA-MKTEGLKQALEKYGFDAAFGGARRDEEKSR---AKERIFSFRDEFGQWDP 160 (301)
T ss_pred h------------cCCCCCCCChHHHHHH-HHHHHHHHHHHHcCCCEEEeccccchhhhh---ccCccccccccccccCc
Confidence 1 232 2357877776 899999999999999999999998752110 111111100 11111
Q ss_pred ccccccccccC----hhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 169 KDQTYFLSHLS----QAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 169 kDQsyfL~~L~----~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
+.|.--|+.+- .....-.++||.+|+..||++|++..|||+.
T Consensus 161 ~~q~Pelw~~~~~~~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~ 206 (301)
T PRK05253 161 KNQRPELWNLYNGRINKGEHIRVFPLSNWTELDIWQYIERENIPIV 206 (301)
T ss_pred cccChhhhhhccccccCCCeEEEeehhhCCHHHHHHHHHHcCCCCC
Confidence 22221111110 1111245799999999999999999999984
No 50
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.60 E-value=2.4e-14 Score=136.34 Aligned_cols=185 Identities=17% Similarity=0.136 Sum_probs=126.6
Q ss_pred eEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVV 99 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~ 99 (474)
|++|++|||+||++++++++++|++|+++++..+...+ +.|.+..+.+.++++|+.+|||++++++...
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~-----~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~------ 69 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEGS-----SMMYHTVNHELLELQAEAMGIPLIRIEISGE------ 69 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCEEEEEEEEecCCCC-----cccccccCHHHHHHHHHHcCCcEEEEeCCCC------
Confidence 68999999999999999999999999999988754221 2233456789999999999999999997421
Q ss_pred hhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccC
Q 042717 100 SYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLS 179 (474)
Q Consensus 100 ~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~ 179 (474)
.++|.. .-+..+.+++++ |++.|++|..+.+ ...++.-+.+.
T Consensus 70 ---~e~~~~-------------~l~~~l~~~~~~-g~~~vv~G~i~sd-------~~~~~~e~~~~-------------- 111 (194)
T cd01994 70 ---EEDEVE-------------DLKELLRKLKEE-GVDAVVFGAILSE-------YQRTRVERVCE-------------- 111 (194)
T ss_pred ---chHHHH-------------HHHHHHHHHHHc-CCCEEEECccccH-------HHHHHHHHHHH--------------
Confidence 022221 125666676666 9999999999863 12222222221
Q ss_pred hhhhccccccccCCCHHHHHHHHHHcCCCCc-C--CCCCcccccccccchHHHHHh-hhccCCCcEEeccCCceeeeecc
Q 042717 180 QAQLKRLIFPLGCISKEEVRKFATQFDLPNK-D--RKDSQGICFLGKIKFSEFVAR-HIGEMEGVILEAETGDFLGKHWG 255 (474)
Q Consensus 180 ~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~-~--k~~S~diCFl~~~~~~~fL~~-~~~~~~G~ivd~~~g~~lG~H~G 255 (474)
..++ ..++||++.+.+++.+-.-+.|+... . +.+--+.-|+|+.--++++.+ .+..+.| +| +.|+...
T Consensus 112 ~~gl-~~~~PLW~~~~~~ll~e~~~~g~~~~iv~v~~~~L~~~~lG~~~~~~~~~~~~~~~~~g--~~-----~~GE~GE 183 (194)
T cd01994 112 RLGL-EPLAPLWGRDQEELLREMIEAGFKAIIIKVAAEGLDESWLGREIDEMFIELLELNEKYG--VD-----PCGEGGE 183 (194)
T ss_pred HcCC-EEEecccCCCHHHHHHHHHHcCCeEEEEEeccCCCCHHHCCCCccHhhHHHHHhhhhcC--cC-----ccCCCce
Confidence 1123 68999999999999888889999742 1 222223347776655666654 1122233 33 6788888
Q ss_pred eeeEee
Q 042717 256 FWFYTI 261 (474)
Q Consensus 256 ~~~yTi 261 (474)
+|.+++
T Consensus 184 yhT~V~ 189 (194)
T cd01994 184 YETLVL 189 (194)
T ss_pred eeEEEE
Confidence 998875
No 51
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=99.59 E-value=1.7e-15 Score=156.73 Aligned_cols=166 Identities=24% Similarity=0.297 Sum_probs=112.1
Q ss_pred EEEEccchhHHHHHHHHHHcC-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEEEEcchHHHHhhH
Q 042717 22 AVLLSGGVDSSVALRLLHSAG-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEVVHLTDEYWKNVV 99 (474)
Q Consensus 22 lValSGGvDSsvaa~LLke~G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~vvd~~~~f~~~V~ 99 (474)
++|+|||+|||+++.+|+++| ++|++++++.++. ++|++.+++-|.++|. +++++|.+++|.++.+
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~------------~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i 68 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQP------------DEDLEAIEEKALKLGASKHIVVDARDEFAEDYI 68 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-------------S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTH
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCc------------HHHHHHHHHHHHhcCCceeeecchHHHHHHHHH
Confidence 689999999999999999998 9999999999752 3678999999999998 9999999999998877
Q ss_pred hhhHHH---HhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccc-
Q 042717 100 SYIIEE---YRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFL- 175 (474)
Q Consensus 100 ~~~i~~---y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL- 175 (474)
.+.+.. | .|+.|.-+..-.. +--..+.++|++.|+++||.|-+.. ++||-.|=
T Consensus 69 ~~aI~anA~Y-eg~YpL~tsl~Rp-lIa~~~v~~A~~~ga~~vaHG~Tgk---------------------GNDqvRFe~ 125 (388)
T PF00764_consen 69 FPAIKANALY-EGRYPLSTSLARP-LIAKKLVEVAREEGADAVAHGCTGK---------------------GNDQVRFEL 125 (388)
T ss_dssp HHHHHTT--B-TTTB--CCCCHHH-HHHHHHHHHHHHHT-SEEE----TT---------------------SSHHHHHHH
T ss_pred HHHHHHHHHh-CCCccccccchHH-HHHHHHHHHHHHcCCeEEeccCCcC---------------------CCchhHHHH
Confidence 666652 3 3556665544444 3367889999999999999887653 12333321
Q ss_pred --cccChhhhccccccccC--CCHHHHHHHHHHcCCCCcC---CCCCccccccccc
Q 042717 176 --SHLSQAQLKRLIFPLGC--ISKEEVRKFATQFDLPNKD---RKDSQGICFLGKI 224 (474)
Q Consensus 176 --~~L~~~~L~~~i~PL~~--ltK~EVr~lA~~~GLp~~~---k~~S~diCFl~~~ 224 (474)
..|.++ .+++.|..+ ++|+|..+||+++|||... +|-|.|.+.++..
T Consensus 126 ~~~al~P~--l~viaP~Rd~~~~R~~~i~ya~~~gIpv~~~~~~~yS~D~Nlwg~s 179 (388)
T PF00764_consen 126 SIRALAPE--LKVIAPWRDWEFSREEEIEYAKKHGIPVPVTKKKPYSIDENLWGRS 179 (388)
T ss_dssp HHHHHSTT--SEEE-GGGHHHHHHHHHHHHHHHTT----SS---SSEEEEESSEEE
T ss_pred HHHHhCcC--CcEecccchhhhhHHHHHHHHHHcCCCCCCCCCCCCCccccccccc
Confidence 122222 268888774 5799999999999999853 3568888887643
No 52
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.59 E-value=1.4e-14 Score=131.99 Aligned_cols=110 Identities=21% Similarity=0.268 Sum_probs=85.3
Q ss_pred eEEEEEccchhHHHHHHHHHHcCC-cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchH-HHHh
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDE-YWKN 97 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~-eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~-f~~~ 97 (474)
.++|++|||+||+++++++++.+. +|.++|++++.. ++++.+.++++|+. |+++..+.++.. +...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~-----------~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~ 70 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFN-----------SEEAVKNIKNLIKK-GLDLDHLVINPEEMKDL 70 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCC-----------CHHHHHHHHHHHHh-CCCeEEEecCHHHHHHH
Confidence 489999999999999999998854 899999987542 35678999999999 887766665532 2221
Q ss_pred hHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 98 VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
.. .... +...+||..|++ +++..+.++|++.|++.|+|||+++.
T Consensus 71 ~~----~~l~-~~~~~p~~~~~~-~~~~~~~~~A~~~g~~~il~G~~~de 114 (154)
T cd01996 71 QL----ARFK-AKVGDPCWPCDT-AIFTSLYKVALKFGIPLIITGENPAQ 114 (154)
T ss_pred HH----HHHh-cccCCCChhhhH-HHHHHHHHHHHHhCcCEEEeCcCHHH
Confidence 11 1111 346789999986 66889999999999999999999975
No 53
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=99.56 E-value=8.2e-14 Score=134.93 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=117.6
Q ss_pred EEEEccchhHHHHHHHHHHcCCcEEEE-EEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHh
Q 042717 22 AVLLSGGVDSSVALRLLHSAGHSCTAF-YLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVS 100 (474)
Q Consensus 22 lValSGGvDSsvaa~LLke~G~eV~gv-~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~ 100 (474)
++++|||+||++++++++++|++|+++ ++. +...+ +.+.+..+.+.++++|+.+|||+++++++..
T Consensus 1 ~vl~SGGkDS~~al~~a~~~G~~v~~l~~~~-~~~~~-----~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~------- 67 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEEGHEVRCLITVV-PENEE-----SYMFHTPNIELTRLQAEALGIPLVKIETSGE------- 67 (218)
T ss_pred CeeecCcHHHHHHHHHHHHcCCEEEEEEEec-cCCCC-----ccccCCCCHHHHHHHHHHhCCCEEEEECCCC-------
Confidence 479999999999999999999999755 555 32211 1122345789999999999999999998620
Q ss_pred hhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccCh
Q 042717 101 YIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQ 180 (474)
Q Consensus 101 ~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~ 180 (474)
.+.|.. .+ +.++.+++.+ |++.|++|..+... . ....-..+ +
T Consensus 68 --~~~~~~------------~l-~~~l~~~~~~-g~~~vv~G~i~sd~------~-~~~~e~v~---------------~ 109 (218)
T TIGR03679 68 --KEKEVE------------DL-KGALKELKRE-GVEGIVTGAIASRY------Q-KSRIERIC---------------E 109 (218)
T ss_pred --ChHHHH------------HH-HHHHHHHHHc-CCCEEEECCcccHh------H-HHHHHHHH---------------H
Confidence 011111 01 3445555444 99999999987621 1 11111111 1
Q ss_pred hhhccccccccCCCHHHHHHHHHHcCCCCcC---CCCCcccccccccchHHHHHhhhc--cCCCcEEeccCCceeeeecc
Q 042717 181 AQLKRLIFPLGCISKEEVRKFATQFDLPNKD---RKDSQGICFLGKIKFSEFVARHIG--EMEGVILEAETGDFLGKHWG 255 (474)
Q Consensus 181 ~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~---k~~S~diCFl~~~~~~~fL~~~~~--~~~G~ivd~~~g~~lG~H~G 255 (474)
+.-..+++||++++|.|+.+.+.+.|+...- +..--+.-|+|+.--++++.++.. .+-| +| ..|+...
T Consensus 110 ~~gl~~~~PLw~~~~~el~~~~~~~G~~~~i~~v~~~~l~~~~lG~~~~~~~~~~l~~l~~~~~--~~-----~~GE~GE 182 (218)
T TIGR03679 110 ELGLKVFAPLWGRDQEEYLRELVERGFRFIIVSVSAYGLDESWLGREIDEKYIEKLKALNKRYG--IN-----PAGEGGE 182 (218)
T ss_pred hCCCeEEeehhcCCHHHHHHHHHHCCCEEEEEEEecCCCChHHCCCccCHHHHHHHHHHHhhcC--cc-----ccCCCce
Confidence 1113789999999999999999999997632 222122336665433566665532 1123 33 6799988
Q ss_pred eeeEee
Q 042717 256 FWFYTI 261 (474)
Q Consensus 256 ~~~yTi 261 (474)
+|.+++
T Consensus 183 ~hT~V~ 188 (218)
T TIGR03679 183 YETLVL 188 (218)
T ss_pred eeEEEE
Confidence 999885
No 54
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.55 E-value=8.2e-14 Score=142.08 Aligned_cols=165 Identities=18% Similarity=0.244 Sum_probs=116.4
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-C-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch---
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-G-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD--- 92 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~--- 92 (474)
.++|+|++|||+||+++|+++.++ | .+|.+++|..+.. +..+.++|+.+|+.+||+++++++++
T Consensus 33 ~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~~s-----------~~~e~~~A~~lA~~LGi~~~~i~i~~~~~ 101 (326)
T PRK00876 33 RRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDS-----------SPESLRLGREVAEHLGVEYVVEDITPALE 101 (326)
T ss_pred CCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCCCC-----------ChHHHHHHHHHHHHcCCCEEEEECchHHH
Confidence 348999999999999999999886 6 5799999986531 35789999999999999999999987
Q ss_pred -----HHHHhhHhhhHHHHhcCC-------------CCC-------------------------cccc--cchHHHHHHH
Q 042717 93 -----EYWKNVVSYIIEEYRCGR-------------TPN-------------------------PDVL--CNTRIKFGAF 127 (474)
Q Consensus 93 -----~f~~~V~~~~i~~y~~G~-------------tpN-------------------------Pci~--Cnr~iKf~~l 127 (474)
+||..|+.+++++|..|. ..+ .+.. -..++|...|
T Consensus 102 ~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~aR~Rm~~l 181 (326)
T PRK00876 102 ALGCYRRRDEAIRRVVPEYGPGWKSKIVLPNLLDGDGLNVFSLVVQDPDGEVTRKRLPANAYLQIVAATNFKQRTRKMVE 181 (326)
T ss_pred HhhhhhhhHHHHHHHHHHHhccccccccccccccccccccccccccCccccccccccccchhhhHHHHHHHHHHHHHHHH
Confidence 356677777777664311 000 0000 1123667778
Q ss_pred HHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCC
Q 042717 128 MDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDL 207 (474)
Q Consensus 128 ~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GL 207 (474)
+.+|...|+-.+-||... + +..+ ||- .-....--+.||++++|.||+++|+.+|+
T Consensus 182 y~~A~~~~~lVlgT~Nks-----------E---~~~G--------y~T---kyGD~~~d~~Pi~~L~Kt~V~~La~~l~v 236 (326)
T PRK00876 182 YYHADRLNYAVAGTPNRL-----------E---YDQG--------FFV---KNGDGAADLKPIAHLYKTQVYALAEHLGV 236 (326)
T ss_pred HHHHHhcCCEEEcCCchh-----------h---HhhC--------Cee---eecCccccchhccCCCHHHHHHHHHHhCC
Confidence 888888887666666432 1 1111 111 01112356789999999999999999999
Q ss_pred CC--cCCCCCccc
Q 042717 208 PN--KDRKDSQGI 218 (474)
Q Consensus 208 p~--~~k~~S~di 218 (474)
|. .++|.|.+.
T Consensus 237 P~~Ii~k~PSa~L 249 (326)
T PRK00876 237 PEEIRRRPPTTDT 249 (326)
T ss_pred CHHHhcCCCCccc
Confidence 94 567778774
No 55
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.54 E-value=3.2e-14 Score=139.82 Aligned_cols=160 Identities=24% Similarity=0.355 Sum_probs=106.9
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc-C-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA-G-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~-G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
+.++++|++|||+||+++|.|+++. | .+|++++|.... .++.+.++|+.+|+.|||++.++|+++.|
T Consensus 17 g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~-----------~~~~~~~~A~~la~~lgi~~~~i~i~~~~ 85 (242)
T PF02540_consen 17 GAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGF-----------SSEEDIEDAKELAEKLGIEYIVIDIDPIF 85 (242)
T ss_dssp TTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESST-----------STHHHHHHHHHHHHHHTSEEEEEESHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhhhcccccccccccc-----------CChHHHHHHHHHHHHhCCCeeccchHHHH
Confidence 3478999999999999999999987 4 689999998432 25788999999999999999999998755
Q ss_pred HH--hhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 95 WK--NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 95 ~~--~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
.. ..+.+.......+ | .+. ++|...++.+|...++-.+-||+... +..+
T Consensus 86 ~~~~~~~~~~~~~~~~~---N---i~a-R~Rm~~ly~~a~~~~~lVlgT~N~sE--------------~~~G-------- 136 (242)
T PF02540_consen 86 DAFLKSLEPADDDLARG---N---IQA-RIRMTTLYALANKYNYLVLGTGNKSE--------------LLLG-------- 136 (242)
T ss_dssp HHHHHHHHHHHHHHHHH---H---HHH-HHHHHHHHHHHHHHTEEEBE--CHHH--------------HHHT--------
T ss_pred HHHhhhhccchhhhhhh---h---HHH-HHHHHHHHHHhcccceEEecCCcHHH--------------hhcC--------
Confidence 32 1122111111111 1 122 26677778888888766666665321 1111
Q ss_pred ccccccChhhhccccccccCCCHHHHHHHHHHcCCCC--cCCCCCcccc
Q 042717 173 YFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN--KDRKDSQGIC 219 (474)
Q Consensus 173 yfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~--~~k~~S~diC 219 (474)
||- . ......-+.||+++.|.||+++|+.+|+|. .+++.|.+.+
T Consensus 137 y~T--~-~GD~~~d~~Pi~~L~K~eV~~la~~l~ip~~ii~k~Psa~L~ 182 (242)
T PF02540_consen 137 YFT--K-YGDGAGDIAPIADLYKTEVRELARYLGIPEEIIEKPPSAGLW 182 (242)
T ss_dssp CSH--T-TTTTSSSBETTTTS-HHHHHHHHHHTTCGHHHHCS--BHHSS
T ss_pred ccc--c-cCcccccceeeCCcCHHHHHHHHHHHhhHHHHhcCCCCCCCC
Confidence 110 0 112234678999999999999999999996 3677777763
No 56
>PRK08576 hypothetical protein; Provisional
Probab=99.52 E-value=1.4e-13 Score=145.07 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=109.4
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
.+|+|++|||+||+++++++.+...++.++|++++.. .++..+.++++|+.+||++++.+.... .
T Consensus 235 ~rVvVafSGGKDStvLL~La~k~~~~V~aV~iDTG~e-----------~pet~e~~~~lae~LGI~lii~~v~~~--~-- 299 (438)
T PRK08576 235 WTVIVPWSGGKDSTAALLLAKKAFGDVTAVYVDTGYE-----------MPLTDEYVEKVAEKLGVDLIRAGVDVP--M-- 299 (438)
T ss_pred CCEEEEEcChHHHHHHHHHHHHhCCCCEEEEeCCCCC-----------ChHHHHHHHHHHHHcCCCEEEcccCHH--H--
Confidence 4899999999999999999999855799999987642 356789999999999999988433211 1
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHL 178 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L 178 (474)
... ..|....+|..|.. +|+..|.+++++.|++.++|||..+. ... +... +. +...-
T Consensus 300 ---~~~--~~g~p~~~~rcCt~-lK~~pL~raake~g~~~iatG~R~dE--------S~~---R~~~-p~-----v~~~~ 356 (438)
T PRK08576 300 ---PIE--KYGMPTHSNRWCTK-LKVEALEEAIRELEDGLLVVGDRDGE--------SAR---RRLR-PP-----VVERK 356 (438)
T ss_pred ---Hhh--hcCCCCcccchhhH-HHHHHHHHHHHhCCCCEEEEEeeHHH--------hHH---hhcC-Cc-----ccccc
Confidence 012 22333346777885 88999999999999999999996431 110 1000 00 00000
Q ss_pred ChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 179 SQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 179 ~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
........++||.+|+.+||..|+..+|||..
T Consensus 357 ~~~~~v~rI~PL~~Wte~DV~~YI~~~gLP~n 388 (438)
T PRK08576 357 TNFGKILVVMPIKFWSGAMVQLYILMNGLELN 388 (438)
T ss_pred cCCCCeEEEeChhhCCHHHHHHHHHHhCCCCC
Confidence 00011357899999999999999999999963
No 57
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=99.51 E-value=1.5e-13 Score=141.72 Aligned_cols=172 Identities=21% Similarity=0.188 Sum_probs=120.5
Q ss_pred CCCCCCCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHH-HHc-----CCCE
Q 042717 12 SMPHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC-DQV-----DVPL 85 (474)
Q Consensus 12 ~~~~~~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va-~~L-----GIpl 85 (474)
++|.....|+++++|||.||-||+|++.+.|.+|.++||.+... .++...+.+..++ ..+ .+.+
T Consensus 169 GLPvGt~Gk~l~LlSGGIDSPVA~~l~mkRG~~v~~v~f~~~p~----------~~~~a~~k~~~l~~~~~~~~~~~~~~ 238 (383)
T COG0301 169 GLPVGTQGKVLLLLSGGIDSPVAAWLMMKRGVEVIPVHFGNPPY----------TSEKAREKVVALALLRLTSYGGKVRL 238 (383)
T ss_pred CCccccCCcEEEEEeCCCChHHHHHHHHhcCCEEEEEEEcCCCC----------chHHHHHHHHHHHhhhhcccCCceEE
Confidence 67888889999999999999999999999999999999976432 1344444444444 333 3567
Q ss_pred EEEEcchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhc
Q 042717 86 EVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSK 165 (474)
Q Consensus 86 ~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~ 165 (474)
+++++.+... .+.. ......-|+.|.|.| ++...++|++.|+..|+||....++.+ +|. -+
T Consensus 239 ~~v~f~~v~~-----~i~~---~~~~~y~~v~~rR~M-~riA~~iae~~g~~aIvtGEsLGQVAS------QTl-~n--- 299 (383)
T COG0301 239 YVVPFTEVQE-----EILE---KVPESYRCVLLKRMM-YRIAEKLAEEFGAKAIVTGESLGQVAS------QTL-EN--- 299 (383)
T ss_pred EEEchHHHHH-----HHHh---hcCccceehHHHHHH-HHHHHHHHHHhCCeEEEecCcchhhhH------hHH-HH---
Confidence 8888864322 1111 122345799999966 788888999999999999999986531 221 11
Q ss_pred CCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccc
Q 042717 166 DKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFL 221 (474)
Q Consensus 166 d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl 221 (474)
|..+....-..+++||..++|+||.++|++.|........-.++|-+
T Consensus 300 ---------L~~i~~~t~~pIlRPLI~~DK~eIi~~Ar~IgT~eiSi~p~e~cc~~ 346 (383)
T COG0301 300 ---------LRVIDSVTNTPVLRPLIGLDKEEIIEIARRIGTYEISIEPPEDCCVI 346 (383)
T ss_pred ---------HHHHHhccCCceeccccCCCHHHHHHHHHHhCChhhhccCCCCCcCc
Confidence 11111111136899999999999999999999866443333467754
No 58
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=99.51 E-value=1.9e-13 Score=137.44 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=112.7
Q ss_pred eEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
+.++++|||+||+|+++|+.+. +..+..+|++++.. .++.++++.++|+.+|++++++...+.+.
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~-----------F~Et~efrd~~a~~~gl~l~v~~~~~~~~ 89 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWK-----------FREMIAFRDHMVAKYGLRLIVHSNEEGIA 89 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCC-----------CHHHHHHHHHHHHHhCCCEEEEechhhhh
Confidence 4578999999999999999998 46788999998642 35789999999999999999998765332
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhH---HhhhcCCccccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSV---LELSKDKVKDQT 172 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~---L~~~~d~~kDQs 172 (474)
..+ ..+ ..++...|+ .+|...|.+++.+.|+++++|||..++.... ..+.++ ........+.|.
T Consensus 90 ~g~-----~~~----~~~~~~~c~-vlK~~pL~~al~e~g~da~itG~RRDEe~sR---ake~i~s~r~~~~~wD~~~q~ 156 (294)
T TIGR02039 90 DGI-----NPF----TEGSALHTD-IMKTEALRQALDKNQFDAAFGGARRDEEKSR---AKERIFSFRNAFHQWDPKKQR 156 (294)
T ss_pred cCc-----ccc----ccChHHHhh-HHHHHHHHHHHHHcCCCEEEecCChhhhhHh---hcCceeeccccccccCccccC
Confidence 111 001 112333454 4888999999999999999999998753110 001111 111111222332
Q ss_pred ccccccC----hhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 173 YFLSHLS----QAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 173 yfL~~L~----~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
--|+.+. .....-.++||.+|+..||+.|+...|||+.
T Consensus 157 Pelw~~~~~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~ 198 (294)
T TIGR02039 157 PELWNLYNGRISKGESVRVFPLSNWTELDIWRYIAAENIPIV 198 (294)
T ss_pred chhhhccccccccCCcEEEechhhCCHHHHHHHHHHcCCCCC
Confidence 2222211 1112245699999999999999999999984
No 59
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.49 E-value=2.4e-13 Score=140.21 Aligned_cols=113 Identities=14% Similarity=0.206 Sum_probs=91.1
Q ss_pred CeEEEEEccchhHHHHHHHHH-HcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHh
Q 042717 19 LKVAVLLSGGVDSSVALRLLH-SAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKN 97 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLk-e~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~ 97 (474)
-.++||+|||+||+++|++|+ +.|.++.++|++++.. ++.+.+.++++|+.+|++++++.....-...
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~-----------~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~ 128 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWN-----------TELGVKNLNNLIKKLGFDLHTITINPETFRK 128 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCC-----------CHHHHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence 459999999999999998884 5699999999987642 3567889999999999999999987533222
Q ss_pred hHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 98 VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
.+. .... ..++||..|...+ +..+.++|.+.|+.+|++||+++..
T Consensus 129 l~~----~~~~-~~~~pc~~c~~~~-~~~l~~~A~~~gi~~Il~G~~~dE~ 173 (343)
T TIGR03573 129 LQR----AYFK-KVGDPEWPQDHAI-FASVYQVALKFNIPLIIWGENIAEE 173 (343)
T ss_pred HHH----HHHh-ccCCCchhhhhHH-HHHHHHHHHHhCCCEEEeCCCHHHh
Confidence 222 2222 4679999999854 7889999999999999999999853
No 60
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=99.49 E-value=9.4e-13 Score=127.57 Aligned_cols=198 Identities=18% Similarity=0.153 Sum_probs=132.1
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
+|+++++|||+||++|++++.++ ++|+++.+..+...+ +.|.+..+.+.++.+|+.+|||++.+..+.++.+
T Consensus 1 Mkv~vl~SGGKDS~lAl~~~~~~-~~V~~L~~~~~~~~~-----s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~-- 72 (222)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEE-HEVISLVGVFSENEE-----SYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEK-- 72 (222)
T ss_pred CeEEEEecCcHHHHHHHHHHHHc-CeeEEEEEEcCCCCC-----ccccccCCHHHHHHHHHHcCCCeEEEEcCCchhH--
Confidence 47999999999999999999999 999999998875432 3466777889999999999999988876532211
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHL 178 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L 178 (474)
.+..|.+.+++.|++.|++|.-... ...+++-+.+.
T Consensus 73 ------------------------~~~~l~~~l~~~gv~~vv~GdI~s~-------~qr~~~e~vc~------------- 108 (222)
T TIGR00289 73 ------------------------EVEDLAGQLGELDVEALCIGAIESN-------YQKSRIDKVCR------------- 108 (222)
T ss_pred ------------------------HHHHHHHHHHHcCCCEEEECccccH-------HHHHHHHHHHH-------------
Confidence 1344556667779999999987531 11222222211
Q ss_pred ChhhhccccccccCCCHHHHHHHHHHcCCCCc---CCCCCcccccccccchHHHHHhhhc--cCCCcEEeccCCceeeee
Q 042717 179 SQAQLKRLIFPLGCISKEEVRKFATQFDLPNK---DRKDSQGICFLGKIKFSEFVARHIG--EMEGVILEAETGDFLGKH 253 (474)
Q Consensus 179 ~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~---~k~~S~diCFl~~~~~~~fL~~~~~--~~~G~ivd~~~g~~lG~H 253 (474)
..++ ..++||+..+.+++.++. +.|+... .+..--+.-|+|+.--.+++.++.. .+-| +| ..|+.
T Consensus 109 -~~gl-~~~~PLW~~d~~~l~e~i-~~Gf~aiIv~v~~~gL~~~~LGr~id~~~~~~L~~l~~~~g--id-----~~GEg 178 (222)
T TIGR00289 109 -ELGL-KSIAPLWHADPEKLMYEV-AEKFEVIIVSVSAMGLDESWLGRRIDKECIDDLKRLNEKYG--IH-----LAFEG 178 (222)
T ss_pred -HcCC-EEeccccCCCHHHHHHHH-HcCCeEEEEEEccCCCChHHcCCccCHHHHHHHHHHHhhcC--cc-----ccCCC
Confidence 1233 688999999999988765 7888652 1222234457776533467766532 1223 33 67888
Q ss_pred cceeeEeecccccCCCCCceEEEEEEecCCCeEE
Q 042717 254 WGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVF 287 (474)
Q Consensus 254 ~G~~~yTiGQR~Gl~i~~~p~yVv~~d~~~N~v~ 287 (474)
..+|.+++ .+|+|=-.+......++
T Consensus 179 GEyhT~V~---------d~PlF~~~i~i~~~e~~ 203 (222)
T TIGR00289 179 GEAETLVL---------DAPLFKKRIEVDEIEKF 203 (222)
T ss_pred ceEEEEEE---------eccccCcceeeEEeEEE
Confidence 88999885 35666544444433333
No 61
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=99.48 E-value=3e-13 Score=132.91 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=110.9
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
.+|+|++|||+||+|+++++.+.+.++.+++++++.. .++..++++++++++|++++++.....+....
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~-----------~pet~e~~~~~~~~~gl~l~v~~~~~~~~~~~ 109 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYL-----------FPETYRFIDELTERLLLNLKVYRPDASAAEQE 109 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCC-----------CHHHHHHHHHHHHHhCCCEEEECCCccHHHHH
Confidence 4699999999999999999999999999999998742 46789999999999999999998865432211
Q ss_pred HhhhHHHHhcCCC----CCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccc
Q 042717 99 VSYIIEEYRCGRT----PNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYF 174 (474)
Q Consensus 99 ~~~~i~~y~~G~t----pNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyf 174 (474)
..+ .+.. .++|..| ..+|...|.+++++.++ ++|||..++.. . +... .+
T Consensus 110 -----~~~-~~~~~~~~~~~~~cc-~~~K~~pl~~~~~~~~~--~itG~R~~es~------~-----R~~~-------~~ 162 (241)
T PRK02090 110 -----ARY-GGLWEQSVEDRDECC-RIRKVEPLNRALAGLDA--WITGLRREQSG------T-----RANL-------PV 162 (241)
T ss_pred -----HHc-CCCccccccCHHHHH-HHHhhHHHHHHHhcCCC--eEEEechhhCc------h-----hccC-------ce
Confidence 111 1221 3567545 45889999999988877 88999976321 0 0000 00
Q ss_pred ccccChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 175 LSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 175 L~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
+. .......+.||.+|+.+||..|+..+|||+.
T Consensus 163 ~~---~~~~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~~ 195 (241)
T PRK02090 163 LE---IDGGRFKINPLADWTNEDVWAYLKEHDLPYH 195 (241)
T ss_pred ee---ecCCeEEEeehhhCCHHHHHHHHHHcCCCCC
Confidence 11 0112356899999999999999999999974
No 62
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.45 E-value=1.6e-13 Score=134.11 Aligned_cols=174 Identities=24% Similarity=0.325 Sum_probs=114.7
Q ss_pred cccccccccCCCCCCCCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHH-HHHH
Q 042717 3 QIEPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKA-VCDQ 80 (474)
Q Consensus 3 ~~~~~~l~~~~~~~~~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~-va~~ 80 (474)
+|+..+.+..... +..|+++|+|||+|||++|.|++++ |-++++++++++... ..+.+.+.+ +.+.
T Consensus 7 ~ie~~i~~ir~~v-g~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR-----------~~E~e~V~~~f~~~ 74 (315)
T COG0519 7 FIEEAIEEIREQV-GDGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLR-----------KGEAEQVVEMFREH 74 (315)
T ss_pred HHHHHHHHHHHHh-CCceEEEEecCCCcHHHHHHHHHHHhhcceEEEEecCCccc-----------CCcHHHHHHHHHhh
Confidence 4455555554443 3689999999999999999999987 999999999998631 223444444 4555
Q ss_pred cCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcc----cccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCc
Q 042717 81 VDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPD----VLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEY 156 (474)
Q Consensus 81 LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPc----i~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~ 156 (474)
+|+++..+|..+.|...+ .|.+ .|- +.-+.+ ...|-+.|++++++|++-|.-.-+. .
T Consensus 75 ~~~nl~~VdA~~~Fl~~L---------~Gvt-DPE~KRKiIG~~F--I~VFe~ea~k~~~~~LaQGTiYpDv-------I 135 (315)
T COG0519 75 LGLNLIVVDAKDRFLSAL---------KGVT-DPEEKRKIIGREF--IEVFEEEAKKLGAEFLAQGTIYPDV-------I 135 (315)
T ss_pred cCCceEEEchHHHHHHHh---------cCCC-CHHHHHHHHHHHH--HHHHHHHHHhCCcceEEecccccce-------e
Confidence 999999999998887642 2221 111 111111 2556678999999999999865321 1
Q ss_pred hhhHHhhhcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 157 KPSVLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 157 ~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
+.. .-..+..|.. .-..+|+..--.+++-||.++.|+|||++++++|||..
T Consensus 136 ES~--~g~~~~IKSH-HNVGGLP~~m~lkLvEPLr~LfKDEVR~lg~~LGlp~~ 186 (315)
T COG0519 136 ESG--TGKAGTIKSH-HNVGGLPEDMKLKLVEPLRELFKDEVRELGRELGLPEE 186 (315)
T ss_pred eec--CCCCCccccc-cccCCCccccceeeeHHHHHHhHHHHHHHHHHhCCCHH
Confidence 111 0000111111 11344655433478999999999999999999999963
No 63
>PRK13981 NAD synthetase; Provisional
Probab=99.43 E-value=9.5e-13 Score=143.42 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=116.3
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc-C-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA-G-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~-G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
+.++++|++|||+||+++|+++.++ | .+|++++|.... .+..+.++|+++|+.|||+++++++++.|
T Consensus 279 ~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~~-----------~~~~~~~~a~~~a~~lgi~~~~i~i~~~~ 347 (540)
T PRK13981 279 GFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSRY-----------TSEESLDDAAALAKNLGVRYDIIPIEPAF 347 (540)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCCC-----------CCHHHHHHHHHHHHHcCCeEEEEECHHHH
Confidence 4568999999999999999999887 7 479999997542 24578999999999999999999999766
Q ss_pred HHhhHhhhHHHHhcCCCCCcccccc--hHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDVLCN--TRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci~Cn--r~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
.. +..++..+..+.++ .-..+| .++|...|+.+|...|+-.+.|||.... ..+
T Consensus 348 ~~--~~~~~~~~~~~~~~-~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~sE~--------------~~G-------- 402 (540)
T PRK13981 348 EA--FEAALAPLFAGTEP-DITEENLQSRIRGTLLMALSNKFGSLVLTTGNKSEM--------------AVG-------- 402 (540)
T ss_pred HH--HHHHhhhhhcCCCC-CchHHHHHHHHHHHHHHHHHhccCCEEEeCCccCHH--------------HcC--------
Confidence 43 22223332223332 222366 5688888999999999999999985321 111
Q ss_pred ccccccChhhhccccccccCCCHHHHHHHHHHcC-------CCC--cCCCCCccc
Q 042717 173 YFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFD-------LPN--KDRKDSQGI 218 (474)
Q Consensus 173 yfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~G-------Lp~--~~k~~S~di 218 (474)
||- +..+ ...-+.|+++++|.+|+++|+.+| +|. .+++.|.+.
T Consensus 403 y~t--~~GD-~~~~~~pi~~l~K~~v~~la~~~~~~~~~~~vp~~i~~~~psa~l 454 (540)
T PRK13981 403 YAT--LYGD-MAGGFAPIKDVYKTLVYRLCRWRNTVSPGEVIPERIITKPPSAEL 454 (540)
T ss_pred CeE--ecCC-cccCccccCCCCHHHHHHHHHHHHhhcCCCcchHHHhCCCCCCCC
Confidence 110 0111 124678999999999999999998 663 355556553
No 64
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=99.39 E-value=1.8e-12 Score=110.65 Aligned_cols=83 Identities=23% Similarity=0.182 Sum_probs=66.6
Q ss_pred EEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHh
Q 042717 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVS 100 (474)
Q Consensus 21 VlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~ 100 (474)
|+|++|||+||+++++++++.+.++.++|++++..+ +.+.++++|++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGYQVIAVTVDHGISP-------------RLEDAKEIAKE-------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCCCEEEEEEcCCCcc-------------cHHHHHHHHHH--------------------
Confidence 689999999999999999999889999999876421 34556666666
Q ss_pred hhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhh
Q 042717 101 YIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELS 164 (474)
Q Consensus 101 ~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~ 164 (474)
+++..+.++|++.|+++|+|||++++ ..++..++..
T Consensus 48 ---------------------~r~~~~~~~a~~~g~~~i~~g~~~~D-------~~~~~~~~~~ 83 (103)
T cd01986 48 ---------------------AREEAAKRIAKEKGAETIATGTRRDD-------VANRALGLTA 83 (103)
T ss_pred ---------------------HHHHHHHHHHHHcCCCEEEEcCCcch-------HHHHHHHHHH
Confidence 35788899999999999999999983 4556555544
No 65
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=99.39 E-value=3.8e-12 Score=128.68 Aligned_cols=165 Identities=19% Similarity=0.182 Sum_probs=113.0
Q ss_pred CeEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
.++++++|||+||+|+++|+.+. +.++-.+|++++.. .++.+++..++++.+|++++++...+.+
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~-----------FpEt~efrD~~a~~~gl~Liv~~~~~~~ 106 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWK-----------FREMIDFRDRRAKELGLDLVVHHNPDGI 106 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCC-----------CHHHHHHHHHHHHHhCCcEEEecChHHH
Confidence 35789999999999999999987 56788999998642 3678999999999999999998765443
Q ss_pred HHhhHhhhHHHHhcCCC---CCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHH---hhhcCCc
Q 042717 95 WKNVVSYIIEEYRCGRT---PNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVL---ELSKDKV 168 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~t---pNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L---~~~~d~~ 168 (474)
+. |.. ..+|..|+. +|...|.+++.+.|++.++||+..++.... ..+.++- ....-..
T Consensus 107 ~~------------G~~~~~~~~~~~c~~-~Kv~pL~raL~~~g~da~itG~RRdE~~sR---ak~~ifs~r~~~~~wD~ 170 (312)
T PRK12563 107 AR------------GIVPFRHGSALHTDV-AKTQGLKQALDHHGFDAAIGGARRDEEKSR---AKERIFSFRSAFHRWDP 170 (312)
T ss_pred Hh------------CCCcccCCHHHHhhH-HhHHHHHHHHHhcCCCEEEEecCHHHhhhh---ccCceecccccccccCc
Confidence 32 221 235666654 788899999989999999999998742110 0011110 0000111
Q ss_pred ccccccccccCh----hhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 169 KDQTYFLSHLSQ----AQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 169 kDQsyfL~~L~~----~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
+.|.--|+.+.. .+..-.++||.+|+..||..|....+||+.
T Consensus 171 ~~qrPelw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~ 216 (312)
T PRK12563 171 KAQRPELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLV 216 (312)
T ss_pred cccChhhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCC
Confidence 122211221110 011246799999999999999999999983
No 66
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.6e-12 Score=115.45 Aligned_cols=175 Identities=25% Similarity=0.327 Sum_probs=119.2
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
++|.|++|||+|||++|++|.+.||+|..|+++++.- ..++.|++.|+.||.||.++.+..+..+..
T Consensus 1 m~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~-------------d~~k~A~~tA~~lgF~h~vl~Ldr~ile~A 67 (198)
T COG2117 1 MDVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVL-------------DSWKYARETAAILGFPHEVLQLDREILEDA 67 (198)
T ss_pred CceEEEecCCCchhHHHHHHHHhCCCcEEEEEEeccc-------------cchhhHHHHHHHhCCCcceeccCHHHHHHH
Confidence 4689999999999999999999999999999998752 347899999999999999999987766655
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHL 178 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L 178 (474)
.+..++ .| .|++-+. .+. +..++++....++.||.|...|+.-| .|... +-|| |
T Consensus 68 ~em~ie---dg-~P~~aIq---~iH-~~alE~~A~r~~~~iaDGTRRDDrvP---------~ls~~----~~qS-----L 121 (198)
T COG2117 68 VEMIIE---DG-YPRNAIQ---YIH-EMALEALASREVDRIADGTRRDDRVP---------KLSRS----EAQS-----L 121 (198)
T ss_pred HHHHHh---cC-CCchHHH---HHH-HHHHHHHHHHHHHHHcCCCcccccCc---------cccHH----HHhh-----H
Confidence 554444 34 3555442 232 33344333336788999988764222 12111 1122 1
Q ss_pred ChhhhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHHhhhccC
Q 042717 179 SQAQLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEM 237 (474)
Q Consensus 179 ~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~~~fL~~~~~~~ 237 (474)
.......-+.||.++-++-|++++...=. ..+.|++. +.+.+|..-|+.++.++
T Consensus 122 EdR~nv~Yi~PL~G~G~kti~~Lv~~~f~-~e~~~Se~----~~k~DYEaElR~lL~er 175 (198)
T COG2117 122 EDRLNVQYIRPLLGLGYKTIRRLVSAIFI-LEEGPSEK----IEKADYEAELRYLLRER 175 (198)
T ss_pred HHhcCceeecccccccHHHHHHHHHHHee-eecccccc----ccccchHHHHHHHHHHc
Confidence 11122467899999999999999987622 22233332 34678988888877643
No 67
>PTZ00323 NAD+ synthase; Provisional
Probab=99.37 E-value=8.9e-12 Score=125.61 Aligned_cols=159 Identities=15% Similarity=0.076 Sum_probs=100.7
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc-CC------cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA-GH------SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVH 89 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~-G~------eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd 89 (474)
+.++++||+|||+||+++|.++.+. |. .++++.+.. .+++.+.+.|+.+|+.+||+++++|
T Consensus 45 g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~------------~ss~~~~~~A~~la~~lGi~~~~id 112 (294)
T PTZ00323 45 GLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPI------------HSSAWALNRGRENIQACGATEVTVD 112 (294)
T ss_pred CCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCC------------CCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 3568999999999999999999886 42 244444432 1256889999999999999999999
Q ss_pred cchHHHHh--hHhhhHH----HHhcCCCCCcccccchHHHHHHHHH---HHHHcCCCEEEEce-ecccccCccCCCchhh
Q 042717 90 LTDEYWKN--VVSYIIE----EYRCGRTPNPDVLCNTRIKFGAFMD---AISSMEFDYVASGH-YAKVVHSSADQEYKPS 159 (474)
Q Consensus 90 ~~~~f~~~--V~~~~i~----~y~~G~tpNPci~Cnr~iKf~~l~~---~A~~~Gad~IATGH-~a~~~~~~~dd~~~~~ 159 (474)
+++.|..- .+..... .+..|.. ..++|...++. .+.+.|.+.|+.|. +++. ..
T Consensus 113 i~~l~~~~~~~i~~~~~~~~~~~~~~n~-------~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE----------~~ 175 (294)
T PTZ00323 113 QTEIHTQLSSLVEKAVGIKGGAFARGQL-------RSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDE----------DG 175 (294)
T ss_pred CcHHHHHHHHHHhhhhcccchhhHHHhH-------HHHHHhHHHHHHHHHHhhcCCCeEEECCCCchh----------hh
Confidence 98765321 1111000 0111100 01122233333 34466888898887 5431 00
Q ss_pred HHhhhcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCC--CcCCCCCcc
Q 042717 160 VLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP--NKDRKDSQG 217 (474)
Q Consensus 160 ~L~~~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp--~~~k~~S~d 217 (474)
.+ + ...+..+. ..-+.|+.+++|.|||++|+.+|+| .+++|.|.+
T Consensus 176 ~~--G----------y~t~~GDg-~~d~~pia~L~K~eVr~LAr~l~lp~~i~~kppSA~ 222 (294)
T PTZ00323 176 YL--G----------YFCKAGDG-VVDVQLISDLHKSEVFLVARELGVPENTLQAAPSAD 222 (294)
T ss_pred Hh--c----------hHhhcCCC-CcCchhhcCCcHHHHHHHHHHcCCCHHHhcCCCCcC
Confidence 00 1 11111122 3567899999999999999999999 778887754
No 68
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=99.37 E-value=5.2e-12 Score=116.26 Aligned_cols=153 Identities=18% Similarity=0.308 Sum_probs=99.2
Q ss_pred eEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVV 99 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~ 99 (474)
.++|++|||+||+|+++|+.+++.++..+|++++.. .++..++++++++.+|+++++......++..+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~~vv~~dtg~e-----------~p~t~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 69 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKVPVVFIDTGYE-----------FPETYEFVDELAKRYGIPIIVYRPPETFEQRFI 69 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTCEEEEEE-STB------------HHHHHHHHHHHHHTTCEEEEEETTSHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCCcEEEEecCcc-----------CHHHHHHHHHHHhhhhhhhhhcccccchhhccc
Confidence 379999999999999999999988888899988642 467889999999999999888888766655432
Q ss_pred hhhHHHHhcCCCCCccc-ccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccccc
Q 042717 100 SYIIEEYRCGRTPNPDV-LCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHL 178 (474)
Q Consensus 100 ~~~i~~y~~G~tpNPci-~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L 178 (474)
. +..+ .+... .|...+|...+.+++++.+...+++|..++.. .....+. ....
T Consensus 70 ~-----~~~~--~~~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es-------~~R~~~~------------~~~~ 123 (174)
T PF01507_consen 70 L-----YGWP--SKLWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADES-------PRRAKLP------------MFEF 123 (174)
T ss_dssp H-----HHHS--TTHHHHHHHHHHTHHHHHHHHHHTTESEEE----TTST-------TGCCGSS------------SEEE
T ss_pred c-----cccc--chhhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhch-------hhhhhch------------hhhc
Confidence 2 1111 11122 47777898888899999999999999987631 1110000 0000
Q ss_pred Chh-hhccccccccCCCHHHHHHHHHHcCCCC
Q 042717 179 SQA-QLKRLIFPLGCISKEEVRKFATQFDLPN 209 (474)
Q Consensus 179 ~~~-~L~~~i~PL~~ltK~EVr~lA~~~GLp~ 209 (474)
... .....++||.+|+++||.+|.+..|+|.
T Consensus 124 ~~~~~~~~~~~Pi~~wt~~dV~~yi~~~~l~~ 155 (174)
T PF01507_consen 124 DEDNPKIIRVYPIADWTEEDVWDYIKANGLPY 155 (174)
T ss_dssp ETTTTSEEEE-TTTT--HHHHHHHHHHHT--B
T ss_pred ccccCCEEEEEehhhCCHHHHHHHHHHhcCCC
Confidence 000 0023567999999999999999999986
No 69
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=99.36 E-value=6.8e-12 Score=123.84 Aligned_cols=168 Identities=21% Similarity=0.292 Sum_probs=123.3
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-CEEEEEcchHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-PLEVVHLTDEYW 95 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-pl~vvd~~~~f~ 95 (474)
+.++|++|+|||.|.++.+.+|+++||+|+++..+.++ .+|.+.|++-|.++|. .+.+.|++++|-
T Consensus 4 ~~~~vVLAySGgLDTscil~WLkeqGyeViay~AnvGQ-------------~edfe~ar~kAlk~Gakk~~~ed~~~eFv 70 (412)
T KOG1706|consen 4 SKKSVVLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQ-------------KEDFEEARKKALKSGAKKVVVEDVREEFV 70 (412)
T ss_pred CCceEEEEecCCcCchhhhHHHHhcCceEEEeeccccc-------------hhhHHHHHHhhhhcCceEEEehhhhHHHH
Confidence 44689999999999999999999999999999888763 5789999999999998 577889999998
Q ss_pred HhhHhhhHH-------HHhcCCC-CCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCC
Q 042717 96 KNVVSYIIE-------EYRCGRT-PNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDK 167 (474)
Q Consensus 96 ~~V~~~~i~-------~y~~G~t-pNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~ 167 (474)
++.+-+.+. .|.-|.. ..||+. +...+.|.+.|+.+|..|....
T Consensus 71 edfi~Pa~qs~a~YEd~YLLGTSlaRp~ia-------~~qv~va~~eg~~aVsHGcTGK--------------------- 122 (412)
T KOG1706|consen 71 EDFIWPALQSSALYEDRYLLGTSLARPVIA-------KAQVDVAQREGAKAVSHGCTGK--------------------- 122 (412)
T ss_pred hhcchhhhhhcchhhceeeeccccccchhh-------hhhhhHHhhcCceeeecccccC---------------------
Confidence 876544333 3555532 356643 4567889999999998887643
Q ss_pred ccccccc-c--cccChhhhccccccccC-------CCHHHHHHHHHHcCCCCcC---CCCCcccccccccchHH
Q 042717 168 VKDQTYF-L--SHLSQAQLKRLIFPLGC-------ISKEEVRKFATQFDLPNKD---RKDSQGICFLGKIKFSE 228 (474)
Q Consensus 168 ~kDQsyf-L--~~L~~~~L~~~i~PL~~-------ltK~EVr~lA~~~GLp~~~---k~~S~diCFl~~~~~~~ 228 (474)
+.||-.| | +.|.++ .+++.|+.. --+++..+||+++|+|... +|-|+|...+ ..+|..
T Consensus 123 GNDQvrFELt~ysl~P~--~kviapwrmp~f~~rf~Gr~Dl~eYakq~giPvpvT~k~pwsmDeNl~-HiSyEa 193 (412)
T KOG1706|consen 123 GNDQVRFELTFYSLKPD--VKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTPKNPWSMDENLM-HISYEA 193 (412)
T ss_pred CCcceeeeeeeeccCCc--ceeeccccchHHHHhhcCchHHHHHHHhcCCCccccCCCCccccccce-eeeecc
Confidence 3455544 1 233333 367888664 2488999999999999743 4667776554 345544
No 70
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.32 E-value=9e-12 Score=139.08 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=106.0
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc----C---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA----G---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVH 89 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~----G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd 89 (474)
+.++|+|++|||+||+++|.++.+. | .+|++|+|.. .. .++.+.++|+++|+.|||++++++
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~mp~-~~----------ss~~s~~~a~~la~~LGi~~~~i~ 428 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPG-FA----------TTDRTKNNAVALMKALGVTAREID 428 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEECCC-CC----------CCHHHHHHHHHHHHHhCCeEEEEE
Confidence 3679999999999999998888776 4 8899999932 11 256889999999999999999999
Q ss_pred cchHHHHhhHhhhHHHHhc--CCCCCcc--c---ccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHh
Q 042717 90 LTDEYWKNVVSYIIEEYRC--GRTPNPD--V---LCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLE 162 (474)
Q Consensus 90 ~~~~f~~~V~~~~i~~y~~--G~tpNPc--i---~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~ 162 (474)
+.+.+.. +++.... ++..++| . .|.| +|...|+.+|.+.|+.+|+||+-. +..
T Consensus 429 I~~~~~~-----~~~~l~~~~~~~~~~~~~t~~N~qaR-~R~~~L~~~An~~g~lvl~Tgn~s-----------E~~--- 488 (679)
T PRK02628 429 IRPAALQ-----MLKDIGHPFARGEPVYDVTFENVQAG-ERTQILFRLANQHGGIVIGTGDLS-----------ELA--- 488 (679)
T ss_pred cHHHHHH-----HHHHhccccccCCcccchhhhhhhHH-HHHHHHHHHHhhcCcEEEcCCchh-----------hHH---
Confidence 9865532 1222211 1112456 2 3777 888999999999999999999532 211
Q ss_pred hhcCCcccccccccccCh-hhhccccccccCCCHHHHHHHHHHc
Q 042717 163 LSKDKVKDQTYFLSHLSQ-AQLKRLIFPLGCISKEEVRKFATQF 205 (474)
Q Consensus 163 ~~~d~~kDQsyfL~~L~~-~~L~~~i~PL~~ltK~EVr~lA~~~ 205 (474)
.+ |+. .. .....-+.|+++++|.+|+++|+.+
T Consensus 489 ~G--------y~T---~~~GD~~~~~~~~~~l~Kt~v~~l~~~~ 521 (679)
T PRK02628 489 LG--------WCT---YGVGDHMSHYNVNASVPKTLIQHLIRWV 521 (679)
T ss_pred hC--------cee---cCCCCcccccccccCCcHHHHHHHHHHH
Confidence 11 110 01 1123567899999999999999988
No 71
>PRK00768 nadE NAD synthetase; Reviewed
Probab=99.32 E-value=8.8e-12 Score=123.82 Aligned_cols=158 Identities=18% Similarity=0.107 Sum_probs=102.0
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc----C-------CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC-C
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA----G-------HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV-P 84 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~----G-------~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI-p 84 (474)
+.+.++|++|||+||+++|+|+.+. + ..++++.|... +..+.++|+.+|+.||+ +
T Consensus 37 g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~-------------~~~~~~da~~la~~lgi~~ 103 (268)
T PRK00768 37 GLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYG-------------VQADEDDAQDALAFIQPDR 103 (268)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCC-------------CcCCHHHHHHHHHhcCCCe
Confidence 4678999999999999999988765 2 22566555421 23468899999999999 7
Q ss_pred EEEEEcchHHHHhhHhhhHHHHhc-CCCCCcccc--cchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHH
Q 042717 85 LEVVHLTDEYWKNVVSYIIEEYRC-GRTPNPDVL--CNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVL 161 (474)
Q Consensus 85 l~vvd~~~~f~~~V~~~~i~~y~~-G~tpNPci~--Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L 161 (474)
+.++++++.+.. +.+.... +...+.-.. -..++|...++.+|...|.-.+.||... +.
T Consensus 104 ~~~i~I~~~~~~-----~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N~s-----------E~--- 164 (268)
T PRK00768 104 VLTVNIKPAVDA-----SVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDHAA-----------EA--- 164 (268)
T ss_pred eEEEECHHHHHH-----HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCccc-----------HH---
Confidence 999999865443 1121111 110100000 1123667778888888887666666532 11
Q ss_pred hhhcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCC--CcCCCCCcc
Q 042717 162 ELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLP--NKDRKDSQG 217 (474)
Q Consensus 162 ~~~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp--~~~k~~S~d 217 (474)
..+ ||- .......-+.|+++++|.||+++|+.+|+| ..++|.|.+
T Consensus 165 ~~G--------y~T---kyGD~~~d~~pi~~L~KteV~~La~~l~vP~~ii~k~Psa~ 211 (268)
T PRK00768 165 VTG--------FFT---KFGDGGADILPLFGLNKRQGRALLAALGAPEHLYEKVPTAD 211 (268)
T ss_pred HhC--------cee---ccCCccccchhhcCCcHHHHHHHHHHhCCCHHHhcCCCCCC
Confidence 111 111 011123567899999999999999999999 567777643
No 72
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=99.27 E-value=4.5e-11 Score=112.90 Aligned_cols=144 Identities=24% Similarity=0.217 Sum_probs=101.8
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHh
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKN 97 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~ 97 (474)
+.|++||+|||+|||+++..|+..|+.|...++.+++ .-...+..+|..+|+.+..+ +.
T Consensus 60 ~~kiaVA~SGG~DSsas~iilR~~g~~v~p~t~~Lp~--------------~ir~n~~~l~~~lg~~p~yv-------ee 118 (255)
T COG1365 60 KPKIAVAYSGGVDSSASAIILRWAGFTVDPGTAILPD--------------HIRRNKEELETLLGEVPEYV-------EE 118 (255)
T ss_pred CceEEEEecCCcchHHHHHHHHhhceeeccccccCCH--------------HHhHHHHHHHHHHccCHHHH-------HH
Confidence 4799999999999999999999999888777776532 33456788999999755433 22
Q ss_pred hHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccc
Q 042717 98 VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSH 177 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~ 177 (474)
.+....+.-..|+ ..||-.|+..| ..+.++.|++++++.||+|.-....+. + +
T Consensus 119 dl~~i~kGalnGR-fhpCGRCh~~I-~~~V~~k~re~di~~vafGDlLs~G~~---------------------s--v-- 171 (255)
T COG1365 119 DLEDIEKGALNGR-FHPCGRCHSMI-ENAVMDKARELDIDVVAFGDLLSTGYG---------------------S--V-- 171 (255)
T ss_pred HHHHHHhhhccCC-CCCcchHHHHH-HHHHHHHHHhcCCeEEEEccccccccc---------------------c--e--
Confidence 2222223334465 46999999966 688889999999999999987643210 0 0
Q ss_pred cChhhhcccccc-ccCCCHHHHHHHHHHcCCCC
Q 042717 178 LSQAQLKRLIFP-LGCISKEEVRKFATQFDLPN 209 (474)
Q Consensus 178 L~~~~L~~~i~P-L~~ltK~EVr~lA~~~GLp~ 209 (474)
-..+.+.++-.| +..++|.|+|.++...|...
T Consensus 172 y~eD~i~rlnlPAflAltK~Elr~il~~~~~e~ 204 (255)
T COG1365 172 YREDGIFRLNLPAFLALTKDELRSILKWNGYEL 204 (255)
T ss_pred eccCCEEEEccHHHHhhCcHHHHHHHHhcCccc
Confidence 011222233344 56789999999999998755
No 73
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=99.22 E-value=4.9e-10 Score=108.72 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=125.7
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
+|+++.+|||+||+++++.+.++ ++|+++..-.....+ +...+.-..+.++.+|+.+|||++.+......
T Consensus 1 Mk~~~l~SGGKDS~~al~~a~~~-~~v~~L~t~~~~~~~-----s~~~H~~~~~~~~~qA~algipl~~~~~~~~~---- 70 (223)
T TIGR00290 1 MKVAALISGGKDSCLALYHALKE-HEVISLVNIMPENEE-----SYMFHGVNAHLTDLQAESIGIPLIKLYTEGTE---- 70 (223)
T ss_pred CcEEEEecCcHHHHHHHHHHHHh-CeeEEEEEEecCCCC-----cccccccCHHHHHHHHHHcCCCeEEeecCCCc----
Confidence 47899999999999999999999 998877544432211 11123345788999999999999875543110
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHL 178 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L 178 (474)
+ -....|.+..++.|++.|++|.-.-. ...++.-+.+
T Consensus 71 -----e-----------------~~~e~l~~~l~~~gv~~vv~GdI~s~-------~qr~~~e~v~-------------- 107 (223)
T TIGR00290 71 -----E-----------------DEVEELKGILHTLDVEAVVFGAIYSE-------YQKTRIERVC-------------- 107 (223)
T ss_pred -----c-----------------HHHHHHHHHHHHcCCCEEEECCcccH-------HHHHHHHHHH--------------
Confidence 0 12345566667779999999987531 1112221111
Q ss_pred ChhhhccccccccCCCHHHHHHHHHHcCCCCcC---CCCCcccccccccchHHHHHhhhc--cCCCcEEeccCCceeeee
Q 042717 179 SQAQLKRLIFPLGCISKEEVRKFATQFDLPNKD---RKDSQGICFLGKIKFSEFVARHIG--EMEGVILEAETGDFLGKH 253 (474)
Q Consensus 179 ~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~---k~~S~diCFl~~~~~~~fL~~~~~--~~~G~ivd~~~g~~lG~H 253 (474)
.+.++ ..++||++.+..++.+-.-+.|+...- ..+--+.-|+|+.--++++.++.. .+.| +| +.|+.
T Consensus 108 ~~lgl-~~~~PLW~~~~~~ll~e~i~~G~~aiIv~v~a~gL~~~~LGr~i~~e~i~~L~~~~~~~g--vd-----~~GEg 179 (223)
T TIGR00290 108 RELGL-KSFAPLWHRDPEKLMEEFVEEKFEARIIAVAAEGLDESWLGRRIDRKMIDELKKLNEKYG--IH-----PAGEG 179 (223)
T ss_pred HhcCC-EEeccccCCCHHHHHHHHHHcCCeEEEEEEecCCCChHHcCCcccHHHHHHHHHHHhccC--CC-----ccCCC
Confidence 11233 688999999999988877899987532 222234457776544467766532 1223 33 67999
Q ss_pred cceeeEeecccccCCCCCceEEEEEEecCCCeE
Q 042717 254 WGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVV 286 (474)
Q Consensus 254 ~G~~~yTiGQR~Gl~i~~~p~yVv~~d~~~N~v 286 (474)
..+|.+++ .+|+|=-.+......+
T Consensus 180 GEyhT~V~---------d~PlF~~~i~~~~~e~ 203 (223)
T TIGR00290 180 GEFETLVL---------DAPIFKKRLEVKEIEK 203 (223)
T ss_pred ceEEEEEe---------cCcccccceeeeeeEE
Confidence 88999885 3566654444443333
No 74
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=99.18 E-value=1e-10 Score=116.14 Aligned_cols=161 Identities=18% Similarity=0.280 Sum_probs=111.2
Q ss_pred CCCCCeEEEEEccchhHHHHHHHHHHc-C-----CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEE
Q 042717 15 HQKGLKVAVLLSGGVDSSVALRLLHSA-G-----HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVV 88 (474)
Q Consensus 15 ~~~~~kVlValSGGvDSsvaa~LLke~-G-----~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vv 88 (474)
....+++++++|||+||++++.|+.+. | ..+.++.|.... ..+.+.++|+.+|+.||+...++
T Consensus 22 ~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~-----------~~~~~~~da~~~~~~lg~~~~~i 90 (268)
T COG0171 22 KAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGY-----------TVQADEEDAQDLAEALGIDYKEI 90 (268)
T ss_pred HcCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCC-----------ccccCHHHHHHHHHHhCCceEEE
Confidence 345578999999999999999999887 4 348888886531 02467899999999999999999
Q ss_pred EcchHHHH---hhHhhhH----HHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHH
Q 042717 89 HLTDEYWK---NVVSYII----EEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVL 161 (474)
Q Consensus 89 d~~~~f~~---~V~~~~i----~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L 161 (474)
++.+.+.. .+...+. +.+..| |- ..++|...++.+|.+.|.=.+-|||..-..
T Consensus 91 ~I~~~v~~~~~~~~~~~~~~~~~~~~~~---Ni----kaR~Rm~~lY~~An~~~~lVlGTgn~sE~~------------- 150 (268)
T COG0171 91 NIKPAVDAFLKKLLKLFLGIYLEDLALG---NI----KARLRMVILYAIANKLGGLVLGTGNKSELA------------- 150 (268)
T ss_pred ecHHHHHHHHHhhhhhhcccchhhHHHh---hh----hHHHHHHHHHHHHhhcCCEEEcCCcHHHHh-------------
Confidence 99864432 2222211 112222 11 123677888999999998888888864310
Q ss_pred hhhcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCCC--cCCCCCccc
Q 042717 162 ELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN--KDRKDSQGI 218 (474)
Q Consensus 162 ~~~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~--~~k~~S~di 218 (474)
.+ ||-. -....--+.|++++.|.+|+++|+.+|+|. ..+|.|.+.
T Consensus 151 -~G--------y~Tk---yGDg~~d~~Pi~~L~KtqV~~La~~l~ipe~I~~k~PTAeL 197 (268)
T COG0171 151 -LG--------YFTK---YGDGAVDINPIADLYKTQVYALARHLGIPEEILKKPPTADL 197 (268)
T ss_pred -cC--------ceec---ccCcccChhhhcCCcHHHHHHHHHHcCCCHHHhcCCCCccc
Confidence 11 1110 011134678999999999999999999985 456666664
No 75
>PRK08557 hypothetical protein; Provisional
Probab=99.14 E-value=1.6e-09 Score=114.26 Aligned_cols=155 Identities=18% Similarity=0.305 Sum_probs=108.4
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHh
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKN 97 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~ 97 (474)
+..++|++|||+||+++++++.+.+.++..+|++++.. .++..++++++++++|+++++++- +.|++.
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~~~~i~vvfvDTG~e-----------fpET~e~ve~v~~~ygl~i~v~~~-~~f~~~ 248 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLE-----------YPETINYVKDFAKKYDLNLDTLDG-DNFWEN 248 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHhCCCCEEEEEECCCC-----------CHHHHHHHHHHHHHhCCCEEEEec-hHHHHH
Confidence 35799999999999999999999888888999998642 467789999999999999999874 466654
Q ss_pred hHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHH---cCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccc
Q 042717 98 VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS---MEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYF 174 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~---~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyf 174 (474)
+. ..|....-.-.|....|...+.++.++ .+....+||-.++... ....+.... .+
T Consensus 249 ~~-------~~G~Ps~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~-------~Ra~~~~~~---~~---- 307 (417)
T PRK08557 249 LE-------KEGIPTKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESF-------TRANLDYER---KS---- 307 (417)
T ss_pred Hh-------hccCCcccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccch-------hhccCceec---cc----
Confidence 32 223211112368887899888888776 3445778998765311 000000000 00
Q ss_pred ccccChhhhccccccccCCCHHHHHHHHHHcCCCC
Q 042717 175 LSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN 209 (474)
Q Consensus 175 L~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~ 209 (474)
+....+ ..++|+.+|+..||..|..++++|+
T Consensus 308 --~~~~~~--~~i~PI~~Wt~~dVW~YI~~~~lp~ 338 (417)
T PRK08557 308 --GFIDFQ--TNVFPILDWNSLDIWSYIYLNDILY 338 (417)
T ss_pred --ccccCc--eeEEecccCCHHHHHHHHHHcCCCC
Confidence 001111 2468999999999999999999997
No 76
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=99.12 E-value=4.6e-10 Score=110.84 Aligned_cols=115 Identities=21% Similarity=0.220 Sum_probs=85.8
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc-EEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS-CTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e-V~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
...+|.+++|||+||+++++++++++.+ +.++++..... ..+|...|+++|+++|+++++++++..-.
T Consensus 14 ~~~~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~-----------~~~e~~~a~~~a~~l~~~~~~~~~~~~~~ 82 (269)
T cd01991 14 SDVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFE-----------GSDEREYARRVAEHLGTEHHEVEFTPADL 82 (269)
T ss_pred cCCceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCC-----------CCChHHHHHHHHHHhCCcceEEEcCHHHH
Confidence 4568999999999999999999998654 67777765421 12468999999999999999999876322
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
...+...+. . ..+|+..|+.. .+..+.+.|.+.|+..+.|||.+|..
T Consensus 83 ~~~~~~~~~--~---~~~p~~~~~~~-~~~~l~~~a~~~~~~v~l~G~g~Del 129 (269)
T cd01991 83 LAALPDVIW--E---LDEPFADSSAI-PLYLLSRLARKHGIKVVLSGEGADEL 129 (269)
T ss_pred HHHHHHHHH--H---hCCCCCCcHHH-HHHHHHHHHHHhCCEEEEecCCcccc
Confidence 222221111 1 23678888874 46778889999999999999999854
No 77
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=99.10 E-value=9.6e-11 Score=117.02 Aligned_cols=216 Identities=17% Similarity=0.203 Sum_probs=146.1
Q ss_pred cccccccCCCCCCCCeEEEEEccchhHHHHHHHHHHc------CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHH
Q 042717 5 EPRYLSCSMPHQKGLKVAVLLSGGVDSSVALRLLHSA------GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVC 78 (474)
Q Consensus 5 ~~~~l~~~~~~~~~~kVlValSGGvDSsvaa~LLke~------G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va 78 (474)
-+++++..+- ..+.+|.++-|||+||+|+|+.+... |.+..-+..+. +...| -+.....+++..
T Consensus 39 ~~ti~~n~l~-~rge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~de----gi~gy-----rd~sl~avkrn~ 108 (347)
T KOG2840|consen 39 HPTIVANKLF-ARGERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDE----GIRGY-----RDDSLEAVKRNG 108 (347)
T ss_pred hhhHhccCcc-CCCCccccccccchhHHHHHHHHHHhhhhcCCCceeeeeeccc----cccce-----eccHHHHHHHhh
Confidence 3455665544 35688999999999999999999875 33444444333 22222 234567788899
Q ss_pred HHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchh
Q 042717 79 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKP 158 (474)
Q Consensus 79 ~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~ 158 (474)
.++|+|+.++.+.+.|..--.+..+.+.. +...|-|..|.. .|+.+|-+-|..+|+..++|||++| |..++
T Consensus 109 ~~~~lPL~ivs~~dl~~~~tmd~i~~~i~-~~~rn~ctfCgv-~RrqaL~~ga~~l~~~~~~tghnaD-------D~aet 179 (347)
T KOG2840|consen 109 VQYGLPLCIVSYKDLYGEWTMDEIVSEIG-QEIRNNCTFCGV-FRRQALDRGADVLGAAELVTGHNAD-------DWAET 179 (347)
T ss_pred hhcCCceEEecHHHHhccchHHHHHHHHh-hhhhcCceeecH-HHHHHHHhhccccchhhhhhcccch-------HHHHH
Confidence 99999999999988776322333233322 235689999995 7899999999999999999999998 45788
Q ss_pred hHHhhhcCCccccccccc-ccCh-h-hhccccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccch----HHHHH
Q 042717 159 SVLELSKDKVKDQTYFLS-HLSQ-A-QLKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIKF----SEFVA 231 (474)
Q Consensus 159 ~~L~~~~d~~kDQsyfL~-~L~~-~-~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~~----~~fL~ 231 (474)
++++..++..+.+...-. .++. + ....-+.||..-++.||.-|+...-|.++. -.|-..++-| +.+|+
T Consensus 180 vl~n~lrgds~rl~R~~~~~t~~~e~~~~~r~kplk~~~~keivLya~~~~L~yFs-----~eCv~ap~a~rg~~r~~lk 254 (347)
T KOG2840|consen 180 VLMNLLRGDSARLERLTEITTPSLEMGIIPRLKPLKYASEKEIVLYASLSKLRYFS-----TECVKAPGASRGDARILLK 254 (347)
T ss_pred HHHHHHHhHHHHhhhccccccCccccCccccccccccchhhehhhHHHHHHHHHHH-----HhhccCCcchHHHHHHHhh
Confidence 888877765444332211 1111 1 123567899999999999999888776653 2354444433 44555
Q ss_pred hhhccCCCcEEec
Q 042717 232 RHIGEMEGVILEA 244 (474)
Q Consensus 232 ~~~~~~~G~ivd~ 244 (474)
++....|+.++|+
T Consensus 255 ~le~~~P~~lmd~ 267 (347)
T KOG2840|consen 255 DLERERPRILMDY 267 (347)
T ss_pred hhhhhCchHHHHH
Confidence 5555567877764
No 78
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=99.10 E-value=2e-09 Score=103.63 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=106.6
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
.+++|.+|||+||+|+++|+.+.+.++..++++++.. .++..+++.++++.+|+++.++.....+..
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~~~~~v~f~DTg~e-----------fpeT~efv~~~~~~~~l~i~~~~~~~~~~~-- 80 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYH-----------FPETYELIDELTERYPLNIKVYKPDLSLAE-- 80 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCC-----------CHHHHHHHHHHHHHhCCceEEECCchhHHH--
Confidence 3699999999999999999999888888889987642 467889999999999998888765432221
Q ss_pred HhhhHHHHhcCC-CCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccc
Q 042717 99 VSYIIEEYRCGR-TPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSH 177 (474)
Q Consensus 99 ~~~~i~~y~~G~-tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~ 177 (474)
+.+.+.... .-.|. .|.+..|...|.++.++.+...+++|-.+++.. ....+. +..
T Consensus 81 ---~~~~~g~~~~~~~~~-~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~-------~R~~~~-----------~~~- 137 (212)
T TIGR00434 81 ---QAAKYGDKLWEQDPN-KYDYLRKVEPMHRALKELHASAWFTGLRRDQGP-------SRANLS-----------ILN- 137 (212)
T ss_pred ---HHHhcCCCccccChH-HHhhHHhHHHHHHHHHhcCCcEEEEecccccCc-------cccCCc-----------eee-
Confidence 122222000 01233 355667888888888888878888998776321 000000 000
Q ss_pred cChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 178 LSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 178 L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
.....-...+.||.+|+..||.+|..++|||+.
T Consensus 138 ~~~~~~~~~v~PI~dWt~~dVw~Yi~~~~lp~n 170 (212)
T TIGR00434 138 IDEKFGILKVLPLIDWTWKDVYQYIDAHNLPYN 170 (212)
T ss_pred ecCCCCcEEEeehhhCCHHHHHHHHHHcCCCCC
Confidence 001001235799999999999999999999973
No 79
>PRK13794 hypothetical protein; Provisional
Probab=99.09 E-value=2.5e-09 Score=114.98 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=109.1
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
+.+++|++|||+||+|+++++.+. +.++.+++++++.. .++..++++++++++|++++++... .|++
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~e-----------fpet~e~i~~~~~~~gl~i~~~~~~-~f~~ 314 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLE-----------FPETLENVEDVEKHYGLEIIRTKSE-EFWE 314 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHhCCCeEEEEEECCCC-----------ChHHHHHHHHHHHhcCCcEEEEchH-HHHH
Confidence 357999999999999999999888 78999999998742 3677899999999999999998765 5665
Q ss_pred hhHhhhHHHHhcCCCCCc-ccccchHHHHHHHHHHHHHc--CCCEEEEceecccccCccCCCchhhHHhhhcCCcccccc
Q 042717 97 NVVSYIIEEYRCGRTPNP-DVLCNTRIKFGAFMDAISSM--EFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTY 173 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNP-ci~Cnr~iKf~~l~~~A~~~--Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsy 173 (474)
.+ .. .|. |.. .-.|...+|..-+.++.++. +....++|-..+... . ++.-.....+
T Consensus 315 ~~-----~~--~G~-P~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~-------~-----Ra~~~~~~~~- 373 (479)
T PRK13794 315 KL-----EE--YGP-PARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESF-------N-----RSKKPRIWRN- 373 (479)
T ss_pred HH-----Hh--cCC-CCCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccH-------h-----HhcCcccccc-
Confidence 42 22 232 221 24677778988888877663 456788998765310 0 1100000000
Q ss_pred cccccChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 174 FLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 174 fL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
... .. ...++||.+|+..||..|....++|+.
T Consensus 374 --~~~-~~--~~~~~PI~~Wt~~dVw~Yi~~~~lp~n 405 (479)
T PRK13794 374 --PYI-KK--QILAAPILHWTAMHVWIYLFREKAPYN 405 (479)
T ss_pred --cCc-CC--cEEEechHhCCHHHHHHHHHHcCCCCC
Confidence 000 01 135799999999999999999999974
No 80
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.03 E-value=3e-09 Score=105.87 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=113.2
Q ss_pred eEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVV 99 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~ 99 (474)
.+++++|||+||+|+++|+.+...++..+|++++.. .++..+.+.++++++|+++.+......+.+.
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~~~~~~vif~DTg~~-----------f~Et~~~~d~~~~~~~~~l~~~~~~~~~~~~-- 107 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKAFPDFPVIFLDTGYH-----------FPETYEFRDRLAEEYGLDLKVYRPDDEVAEG-- 107 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHhcCCCcEEEEeCCCc-----------CHHHHHHHHHHHHHcCCeEEEecCccchhhh--
Confidence 389999999999999999999988888899998642 4688999999999999999999887766554
Q ss_pred hhhHHHHhcCCCCCcc-c-ccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccc-c
Q 042717 100 SYIIEEYRCGRTPNPD-V-LCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFL-S 176 (474)
Q Consensus 100 ~~~i~~y~~G~tpNPc-i-~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL-~ 176 (474)
+.|.. .-..|+ . .|....|-.-|.++.++.+.+.++||-..++... . +. ..++- .
T Consensus 108 ----~~~~~-~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~-------R-----ak-----~~~~~~~ 165 (261)
T COG0175 108 ----EKYGG-KLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPT-------R-----AK-----LPVVSFD 165 (261)
T ss_pred ----hhccc-CCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEecccccccc-------c-----cc-----Cceeccc
Confidence 11111 112232 3 3787789999999999998899999987653211 0 00 00000 0
Q ss_pred ccChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 177 HLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 177 ~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
....+ .-.++||.+||..||..|....++|+.
T Consensus 166 ~~~~~--~~rv~Pl~~Wt~~dVw~Yi~~~~lp~n 197 (261)
T COG0175 166 SEFGE--SIRVNPLADWTELDVWLYILANNLPYN 197 (261)
T ss_pred cCcCC--eEEEcchhcCCHHHHHHHHHHhCCCCC
Confidence 00001 247899999999999999999999974
No 81
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=99.01 E-value=4.5e-10 Score=108.77 Aligned_cols=182 Identities=19% Similarity=0.228 Sum_probs=97.5
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
+|+++.+|||+||++|++.+.++ ++|.++..-.....+ +...+.-..+.++..|+.+|||+..+..+.. +
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~-~~v~~L~t~~~~~~~-----s~~~H~~~~~~~~~qA~algipl~~~~~~g~-~--- 70 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ-HEVVCLLTMVPEEED-----SYMFHGVNIELIEAQAEALGIPLIEIPTSGD-E--- 70 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT--EEEEEEEEEESTTT------SSS-STTGTCHHHHHHHHT--EEEEEE----C---
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh-CCccEEEEeccCCCC-----cccccccCHHHHHHHHHHCCCCEEEEEccCc-c---
Confidence 58999999999999999999999 999766433221111 1112334467889999999999999887521 0
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHL 178 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L 178 (474)
+ . -...|.+..++++++.+++|.-.-. + ...+.-..+
T Consensus 71 -----~---------------~--~~~~l~~~l~~~~v~~vv~GdI~~~------~-~r~~~e~vc-------------- 107 (218)
T PF01902_consen 71 -----E---------------D--YVEDLKEALKELKVEAVVFGDIDSE------Y-QRNWVERVC-------------- 107 (218)
T ss_dssp -----C---------------C--HHHHHHHHHCTC--SEEE--TTS-H------H-HHHHHHHHH--------------
T ss_pred -----c---------------h--hhHHHHHHHHHcCCCEEEECcCCcH------H-HHHHHHHHH--------------
Confidence 0 0 0244556667788999999976421 1 112211111
Q ss_pred ChhhhccccccccCCCHHHHHHHHHHcCCCCc---CCCCCcccccccccchHHHHHhhhc--cCCCcEEeccCCceeeee
Q 042717 179 SQAQLKRLIFPLGCISKEEVRKFATQFDLPNK---DRKDSQGICFLGKIKFSEFVARHIG--EMEGVILEAETGDFLGKH 253 (474)
Q Consensus 179 ~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~---~k~~S~diCFl~~~~~~~fL~~~~~--~~~G~ivd~~~g~~lG~H 253 (474)
...++ ..++||++.+..++.+-.-+.|+... .+..--+.-|+|+.--++++.++.. .+.| +| ..|+.
T Consensus 108 ~~lGl-~~~~PLW~~d~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~LGr~l~~e~i~~L~~~~~~~g--vd-----p~GE~ 179 (218)
T PF01902_consen 108 ERLGL-EAVFPLWGRDREELLREFIESGFEAIIVKVDADGLDESFLGRELDRELIEELPELNKKYG--VD-----PCGEG 179 (218)
T ss_dssp HHCT--EEE-TTTT--HHHHHHHHHHTT-EEEEEEEESTT--GGGTT-B--HHHHHHHHHHHHHH----------TT-TT
T ss_pred HHcCC-EEEecccCCCHHHHHHHHHHCCCeEEEEEEeccCCChHHCCCCccHHHHHHHHHHHhhcC--cc-----ccCCC
Confidence 11133 78999999999998777777898652 1223333467876544466666532 1234 33 67999
Q ss_pred cceeeEee
Q 042717 254 WGFWFYTI 261 (474)
Q Consensus 254 ~G~~~yTi 261 (474)
..+|.+.+
T Consensus 180 GEfhT~V~ 187 (218)
T PF01902_consen 180 GEFHTFVV 187 (218)
T ss_dssp TTEEEEEE
T ss_pred eeEEEEEE
Confidence 89999885
No 82
>PRK13795 hypothetical protein; Provisional
Probab=98.99 E-value=8.4e-09 Score=114.50 Aligned_cols=156 Identities=24% Similarity=0.310 Sum_probs=109.3
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHh
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKN 97 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~ 97 (474)
+.+|+|++|||+||+|+++|+.+.+.++..++++++.. .++..++++++++.+|+++++++..+.|++.
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~~~~~vvfiDTg~e-----------fpet~e~v~~~~~~~gi~i~~~~~~~~f~~~ 311 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREALKDFKAFFNNTGLE-----------FPETVENVKEVAEEYGIELIEADAGDAFWRA 311 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhCCCcEEEEEeCCCC-----------CHHHHHHHHHHHHHcCCcEEEEcccHhHHHh
Confidence 35799999999999999999999987888899987642 3678899999999999999999988778764
Q ss_pred hHhhhHHHHhcCCCCCcc-cccchHHHHHHHHHHHHHcC--CCEEEEceecccccCccCCCchhhHHhhhcCCccccccc
Q 042717 98 VVSYIIEEYRCGRTPNPD-VLCNTRIKFGAFMDAISSME--FDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYF 174 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPc-i~Cnr~iKf~~l~~~A~~~G--ad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyf 174 (474)
+ +.+ | .|..+ -.|....|..-+.++.++.. ....++|-..+.. ... .....- ..+
T Consensus 312 ~-----~~~--g-~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES-------~~R--~~~~~~-~~~---- 369 (636)
T PRK13795 312 V-----EKF--G-PPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYES-------FSR--AKSPRV-WRN---- 369 (636)
T ss_pred h-----hcc--C-CCccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccch-------HHH--hhCccc-ccC----
Confidence 3 211 2 23322 25666788888888877662 2366788876521 010 000000 000
Q ss_pred ccccChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 175 LSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 175 L~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
..+ +.+ ..+.||.+|+..||..|...+++|+.
T Consensus 370 -~~~-~~~--~~~~PI~~Wt~~dVw~YI~~~~lp~n 401 (636)
T PRK13795 370 -PWV-PNQ--IGASPIQDWTALEVWLYIFWRKLPYN 401 (636)
T ss_pred -CCC-CCc--EEEechHhCCHHHHHHHHHHhCCCCC
Confidence 000 111 35799999999999999999999974
No 83
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=98.96 E-value=1.4e-08 Score=99.06 Aligned_cols=156 Identities=13% Similarity=0.164 Sum_probs=106.0
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcC-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchH-HH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAG-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDE-YW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~-f~ 95 (474)
++++++++|||+||+|+++|+.+.. .++..|+++++.. .++..+++.++++.+|+.+.++..... ..
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~~~i~vv~vDTg~~-----------fpET~e~~d~~~~~~~~~l~v~~~~~~~~~ 93 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYH-----------FPQTLTLKDELTKKYYQTLNLYKYDGCESE 93 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhCCCCCEEEEeCCCC-----------CHHHHHHHHHHHHHhCCceEEEEeCCchhH
Confidence 4579999999999999999999987 7888899998752 468899999999999965555443321 11
Q ss_pred HhhHhhhHHHHhcCCC---CCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccc
Q 042717 96 KNVVSYIIEEYRCGRT---PNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQT 172 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~t---pNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQs 172 (474)
.. +..+ .|.. .+|- .|....|..-|.+++++++.+.++||-..++... ......+. . |.
T Consensus 94 ~~----~~~~--~G~~~~~~~~~-~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~~----Ra~~~~~~--~----d~- 155 (226)
T TIGR02057 94 AD----FEAK--YGKLLWQKDIE-KYDYIAKVEPMQRALKELNASAWFTGRRRDQGSA----RANLPVIE--I----DE- 155 (226)
T ss_pred HH----HHHh--cCCCccccCHH-HHHHHHhhHHHHHHHHhcCCCEEEEecchhhCcc----ccCCcccc--c----cC-
Confidence 11 1111 2321 1232 3556688899999998888899999987653210 00000000 0 00
Q ss_pred ccccccChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 173 YFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 173 yfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
..+. -.+.||.+|+..||..|.++++||+.
T Consensus 156 -------~~~~-~kv~Pi~~Wt~~dVw~Yi~~~~lP~n 185 (226)
T TIGR02057 156 -------QNGI-LKVNPLIDWTFEQVYQYLDAHNVPYN 185 (226)
T ss_pred -------CCCe-EEEeehhhCCHHHHHHHHHHcCCCCC
Confidence 0112 35699999999999999999999984
No 84
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=98.94 E-value=2.6e-09 Score=110.44 Aligned_cols=68 Identities=28% Similarity=0.422 Sum_probs=59.3
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-C-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-G-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
..+|++++|||+||+|++.||.++ | .+++++++++++. ...+.+.+++--..|||+++++|.+..|.
T Consensus 230 ~~~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ai~vdNG~m-----------rk~Ea~~V~~tl~~lgi~i~v~~as~~f~ 298 (552)
T KOG1622|consen 230 DYKVLVAVSGGVDSTVCAALLRRALGPDRVHAIHVDNGFM-----------RKKEAEQVEKTLVYLGIPITVVDASETFL 298 (552)
T ss_pred ccceEEEecCCchHHHHHHHHHHhhCCCceEEEEecccch-----------hhhHHHHHHHHHHHcCCceEEeechHHHH
Confidence 578999999999999999999987 6 7899999998753 35677788888888999999999999887
Q ss_pred H
Q 042717 96 K 96 (474)
Q Consensus 96 ~ 96 (474)
.
T Consensus 299 s 299 (552)
T KOG1622|consen 299 S 299 (552)
T ss_pred H
Confidence 6
No 85
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=98.92 E-value=8.5e-09 Score=100.01 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=77.8
Q ss_pred CCCeEEEEEccchhHHHHHHHHHH-cCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHS-AGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke-~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
...+|.+.+|||+||++++.++++ .+..+.++++..... ...|...|+++|+.+|++|++++++....
T Consensus 16 ~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~-----------~~~e~~~a~~va~~~~~~~~~~~~~~~~~ 84 (255)
T PF00733_consen 16 SDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDD-----------DYDEREYARKVARHLGLEHHEIELDPEDL 84 (255)
T ss_dssp CTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSC-----------C--HHHHHHHHHHHHT-EEEEEEE-HHHH
T ss_pred cCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCC-----------cchhHHHHHHHhcccccccceeeechhhH
Confidence 467899999999999999999999 688999999876432 12389999999999999999999986433
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
...+...+... ..|.++..++... ...+.+.+.+.|.+.+.|||-+|..
T Consensus 85 ~~~~~~~~~~~---~~p~~~~~~~~~~-~~~~~~~a~~~~~~~~ltG~GgDel 133 (255)
T PF00733_consen 85 LDNLEDIIWRL---DGPSPLDDPNSLP-LYLLARLARENGIRVLLTGQGGDEL 133 (255)
T ss_dssp HHHHHHHHHHH---T---HHHHHHHHH-HHHHHHHHCHTTBSEEE--TTHHHH
T ss_pred HHhHHHHHHHH---hCCcccccccccH-HHHHHHhhcccceeEEEeccccccc
Confidence 22233222221 2343323555433 4456677878999999999998854
No 86
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=98.87 E-value=2.6e-08 Score=95.59 Aligned_cols=183 Identities=20% Similarity=0.182 Sum_probs=116.0
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
+|+++.+|||+||..|+|++.+.|++|..+..-.....+.-. -+....+.+..+|+.+|||+...+.+-+...
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m-----~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~-- 73 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENGDSYM-----FHTPNLELAELQAEAMGIPLVTFDTSGEEER-- 73 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCCCeee-----eeccchHHHHHHHHhcCCceEEEecCccchh--
Confidence 578999999999999999999999999877554433222111 1345688999999999999988877531111
Q ss_pred HhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccccccc
Q 042717 99 VSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHL 178 (474)
Q Consensus 99 ~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L 178 (474)
...-|.+..+.+++|.|.+|..+.. .+ .+.+- .+
T Consensus 74 ------------------------eve~L~~~l~~l~~d~iv~GaI~s~------yq-k~rve---------------~l 107 (223)
T COG2102 74 ------------------------EVEELKEALRRLKVDGIVAGAIASE------YQ-KERVE---------------RL 107 (223)
T ss_pred ------------------------hHHHHHHHHHhCcccEEEEchhhhH------HH-HHHHH---------------HH
Confidence 1344566677788999999987642 11 11111 12
Q ss_pred ChhhhccccccccCCCHHHHHHHHHHcCCCCcC---CCCCcccccccccchHHHHHhhhc--cCCCcEEeccCCceeeee
Q 042717 179 SQAQLKRLIFPLGCISKEEVRKFATQFDLPNKD---RKDSQGICFLGKIKFSEFVARHIG--EMEGVILEAETGDFLGKH 253 (474)
Q Consensus 179 ~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~~---k~~S~diCFl~~~~~~~fL~~~~~--~~~G~ivd~~~g~~lG~H 253 (474)
..+.-.+.+.||.+.+-.++.+-.-+.|+.... ...--+.-.++++--++++.++.. .+.| ++ +.|+-
T Consensus 108 c~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~yg--i~-----~~GEg 180 (223)
T COG2102 108 CEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVAVSAEGLDESWLGRRIDREFLEELKSLNRRYG--IH-----PAGEG 180 (223)
T ss_pred HHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEEEeccCCChHHhCCccCHHHHHHHHHHHHhcC--CC-----ccCCC
Confidence 222123788999999999988888888887532 222222223444322355555432 2334 33 55776
Q ss_pred cceeeEee
Q 042717 254 WGFWFYTI 261 (474)
Q Consensus 254 ~G~~~yTi 261 (474)
..+|.+.+
T Consensus 181 GEfeT~Vl 188 (223)
T COG2102 181 GEFETLVL 188 (223)
T ss_pred cceEEEEe
Confidence 66777663
No 87
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=98.85 E-value=2.4e-08 Score=107.07 Aligned_cols=116 Identities=20% Similarity=0.201 Sum_probs=84.5
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCC--cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGH--SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~--eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
...+|.+.+|||+||+++++++.+... .+.++++...... ..+|...|+++|+++|++|++++++++.
T Consensus 252 ~~~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~----------~~~E~~~A~~vA~~lg~~~~~i~~~~~~ 321 (467)
T TIGR01536 252 ADVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSP----------DFDESPYARKVADHLGTEHHEVLFSVEE 321 (467)
T ss_pred cCCceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCC----------CCChHHHHHHHHHHhCCcCeEEECCHHH
Confidence 345799999999999999999988754 6778877653211 1245779999999999999999998532
Q ss_pred HHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
....+...+.. ..+||..|+.. ....+.+.|.+.|+..+.||+.+|..
T Consensus 322 ~~~~~~~~v~~-----~~~p~~~~~~~-~~~~l~~~a~~~G~~vlltG~GaDEl 369 (467)
T TIGR01536 322 GLDALPEVIYH-----LEDPTTIRASI-PLYLLSKLAREDGVKVVLSGEGADEL 369 (467)
T ss_pred HHHHHHHHHHh-----hCCCCCCchHH-HHHHHHHHHHhcCCEEEEecCcchhc
Confidence 22222222221 12788877764 34567788999999999999999864
No 88
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=98.69 E-value=2.4e-07 Score=103.95 Aligned_cols=67 Identities=22% Similarity=0.228 Sum_probs=51.1
Q ss_pred CCCeEEEEEccchhHHHHHHHH--------HHc--CCc----------------------------EEEEEEEcCCCCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLL--------HSA--GHS----------------------------CTAFYLKIWFQEDF 58 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LL--------ke~--G~e----------------------------V~gv~~~~~~~~~~ 58 (474)
+.++++|++|||+||+++|.+. +.. |.+ +++++|..-.
T Consensus 347 g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~mp~~~---- 422 (700)
T PLN02339 347 GASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGSEN---- 422 (700)
T ss_pred CCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEECCCCC----
Confidence 4578999999999999977763 222 322 5677775321
Q ss_pred ccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHH
Q 042717 59 ENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 59 ~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f 94 (474)
+++.+.++|+++|+.||+.|+++++++.+
T Consensus 423 -------ss~~t~~~A~~la~~lG~~~~~i~I~~~~ 451 (700)
T PLN02339 423 -------SSEETRSRAKQLADEIGSSHLDVKIDGVV 451 (700)
T ss_pred -------CCHHHHHHHHHHHHHHCCCEEEEeCHHHH
Confidence 36788999999999999999999998543
No 89
>PRK06850 hypothetical protein; Provisional
Probab=98.48 E-value=2.2e-06 Score=92.25 Aligned_cols=170 Identities=19% Similarity=0.245 Sum_probs=98.8
Q ss_pred CeEEEEEccchhHHHHHHHHHHc--C-------CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA--G-------HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVH 89 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~--G-------~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd 89 (474)
..++|++|||+||++++.|+.++ + ..|+.++.+++...-. . ..--....+..+..|+..|+|+.+.-
T Consensus 35 ~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe-~---~~~v~~~l~~i~~~a~~~glpi~~~~ 110 (507)
T PRK06850 35 RPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPV-V---VDWVNKSLERINEAAKKQGLPITPHK 110 (507)
T ss_pred CCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHH-H---HHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 45899999999999999988765 1 1466666666532100 0 00001234556677889999987643
Q ss_pred c----chHHHHhhHhhhHHHHhcCC-CCC-cccccchHHHHHHHHHHHH----HcCCCEEEEceecccccCccCCCchhh
Q 042717 90 L----TDEYWKNVVSYIIEEYRCGR-TPN-PDVLCNTRIKFGAFMDAIS----SMEFDYVASGHYAKVVHSSADQEYKPS 159 (474)
Q Consensus 90 ~----~~~f~~~V~~~~i~~y~~G~-tpN-Pci~Cnr~iKf~~l~~~A~----~~Gad~IATGH~a~~~~~~~dd~~~~~ 159 (474)
+ .+.||..++. .|- +|+ .--+|...+|..-+.++.+ +.|--.+++|-..+... .+.-
T Consensus 111 v~P~~~~sFwv~liG-------rG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~------~RA~ 177 (507)
T PRK06850 111 LTPKINDTFWVNLIG-------KGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA------ARAQ 177 (507)
T ss_pred eCCCcchhHHHHHhc-------CCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH------HHHh
Confidence 3 3578866542 332 132 2346887788877766554 44667788998765210 1111
Q ss_pred HHhhhcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCCC
Q 042717 160 VLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN 209 (474)
Q Consensus 160 ~L~~~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~ 209 (474)
.+.... .+... +..-....-...+.|+.+|+-+||..|....++|+
T Consensus 178 ~m~~~~---~~~~r-l~~~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~ 223 (507)
T PRK06850 178 VMAKHE---IEGSR-LSRHTTLPNAFVYTPIEDWSNDDVWKYLLQWENPW 223 (507)
T ss_pred hhhhhc---ccCcc-eeeccCCCCcEEEeChHhCCHHHHHHHHHhcCCCC
Confidence 111100 01011 11100001123678999999999999999998887
No 90
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=98.43 E-value=4.2e-06 Score=89.05 Aligned_cols=172 Identities=19% Similarity=0.226 Sum_probs=99.0
Q ss_pred CeEEEEEccchhHHHHHHHHHHc--C-------CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA--G-------HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVH 89 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~--G-------~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd 89 (474)
...+|++|||+||++++.|+.++ + ..|+.++.+++...-. .+ .--....+.++..|++.|+|+.+.-
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe-~~---~~v~~~l~~i~~~a~~~~lpi~~~~ 89 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPI-VA---AWVNASLERMQEAAQDQGLPIEPHR 89 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHH-HH---HHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 45899999999999999888765 1 2466666676532100 00 0001234456678889899887644
Q ss_pred c----chHHHHhhHhhhHHHHhcCC-CCCc-ccccchHHHHHHHHHHHH----HcCCCEEEEceecccccCccCCCchhh
Q 042717 90 L----TDEYWKNVVSYIIEEYRCGR-TPNP-DVLCNTRIKFGAFMDAIS----SMEFDYVASGHYAKVVHSSADQEYKPS 159 (474)
Q Consensus 90 ~----~~~f~~~V~~~~i~~y~~G~-tpNP-ci~Cnr~iKf~~l~~~A~----~~Gad~IATGH~a~~~~~~~dd~~~~~ 159 (474)
+ .+.||..++ ..|- .|++ --.|...+|..-+.++.+ +.|...+++|-..+... .+.-
T Consensus 90 v~P~~~~~Fwv~li-------GrG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~------~RA~ 156 (447)
T TIGR03183 90 LTPEIKDTFWVNLI-------GKGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQ------ARAA 156 (447)
T ss_pred cCCCcchHHHHHHh-------cCCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHH------HHHh
Confidence 3 346775543 2342 1222 345887788877665544 45777889998765210 0111
Q ss_pred HHhhhcCCcccccccccccChhhhccccccccCCCHHHHHHHHHHcCCCC
Q 042717 160 VLELSKDKVKDQTYFLSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPN 209 (474)
Q Consensus 160 ~L~~~~d~~kDQsyfL~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~ 209 (474)
.+.. .+....-.+ ++.-....-...+.|+.+|+-+||..|....++|+
T Consensus 157 ~m~k-~e~~~~r~~-l~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~ 204 (447)
T TIGR03183 157 VMEK-HESGSLRDR-LSRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPW 204 (447)
T ss_pred hhhh-hcccccccc-ccccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCC
Confidence 1111 010000000 11100011124789999999999999999998877
No 91
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.33 E-value=1.5e-06 Score=71.16 Aligned_cols=57 Identities=30% Similarity=0.329 Sum_probs=48.7
Q ss_pred EEEEEccchhHHHHHHHHHHc---CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHh
Q 042717 21 VAVLLSGGVDSSVALRLLHSA---GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKN 97 (474)
Q Consensus 21 VlValSGGvDSsvaa~LLke~---G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~ 97 (474)
|+|++|||.||+++++++++. +.++++++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~---------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV---------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH----------------------------------------------
Confidence 589999999999999999988 7787777651
Q ss_pred hHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 98 VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
.++..+.+++++.|++.|++||+.++
T Consensus 35 ------------------------~~~~~~~~~a~~~~~~~Iv~G~~~~d 60 (86)
T cd01984 35 ------------------------AFVRILKRLAAEEGADVIILGHNADD 60 (86)
T ss_pred ------------------------HHHHHHHHHHHHcCCCEEEEcCCchh
Confidence 24677888999999999999999874
No 92
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=98.25 E-value=5.6e-06 Score=91.33 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=74.9
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcC------------CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCE
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAG------------HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPL 85 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G------------~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl 85 (474)
..+|.+.||||+|||+++.++++.. ..+..+++. +. ...|..+|+++|+.||.+|
T Consensus 237 dvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig--~~-----------~~~D~~~Ar~vA~~lg~~h 303 (586)
T PTZ00077 237 DVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIG--LE-----------GSPDLKAARKVAEYLGTEH 303 (586)
T ss_pred CCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcC--CC-----------CCchHHHHHHHHHHhCCcC
Confidence 4579999999999999999998752 345555442 21 1257899999999999999
Q ss_pred EEEEcch-HHHHhhHhhhHHHHhcCCCCCc-ccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 86 EVVHLTD-EYWKNVVSYIIEEYRCGRTPNP-DVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 86 ~vvd~~~-~f~~~V~~~~i~~y~~G~tpNP-ci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
+.+.++. ++.+ .+..++. .. .+|++ .+.+. +-+..+.+.+++.|+..|.||.-+|..
T Consensus 304 ~~i~~~~~e~~~-~l~~~i~--~l-e~~~~~~~~~~--~p~yll~r~a~~~gvkVvLsGeGaDEl 362 (586)
T PTZ00077 304 HEFTFTVEEGID-ALPDVIY--HT-ETYDVTTIRAS--TPMYLLSRRIKALGIKMVLSGEGSDEL 362 (586)
T ss_pred cEEEECHHHHHH-HHHHHHH--Hh-cCCCCCCcchH--HHHHHHHHHHHhcCCeEEEecCchhhh
Confidence 9988764 3332 2222221 11 23332 22222 223456778888899999999999854
No 93
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=98.23 E-value=7.8e-06 Score=89.69 Aligned_cols=112 Identities=23% Similarity=0.263 Sum_probs=74.3
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCC--------------cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGH--------------SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV 83 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~--------------eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI 83 (474)
..+|.+.||||+|||+++.++++... .+..+++... ...|...|+++|+.||.
T Consensus 227 dvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~-------------~~~D~~~A~~vA~~lg~ 293 (554)
T PRK09431 227 DVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE-------------GSPDLKAAREVADHLGT 293 (554)
T ss_pred CCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC-------------CCChHHHHHHHHHHhCC
Confidence 45799999999999999999987632 3555554321 12479999999999999
Q ss_pred CEEEEEcch-HHHHhhHhhhHHHHhcCCCCCc-ccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 84 PLEVVHLTD-EYWKNVVSYIIEEYRCGRTPNP-DVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 84 pl~vvd~~~-~f~~~V~~~~i~~y~~G~tpNP-ci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
+|+.+.++. ++.+ .+..++.... +.+| .+.+. +-+-.+.+.+++.|+..+.||.-+|..
T Consensus 294 ~h~~v~~t~~e~~~-~l~~vi~~le---~~dp~~~~~~--~p~yll~~~~~~~gvkvvLsGeGaDEl 354 (554)
T PRK09431 294 VHHEIHFTVQEGLD-ALRDVIYHLE---TYDVTTIRAS--TPMYLMARKIKAMGIKMVLSGEGADEL 354 (554)
T ss_pred ccEEEEeCHHHHHH-HHHHHHHHHh---ccCCccchhH--HHHHHHHHHHHHcCCEEEEecCchhhh
Confidence 999999874 3433 2222222111 2222 12222 223445666667899999999999854
No 94
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=98.20 E-value=2.2e-05 Score=74.60 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=95.3
Q ss_pred chhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch-HHHHhhHhhhHHHH
Q 042717 28 GVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD-EYWKNVVSYIIEEY 106 (474)
Q Consensus 28 GvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~-~f~~~V~~~~i~~y 106 (474)
|.||+|+++|+.+...++..++++++.. .++..+++.++++++|++++++.-.. .++. ..+++
T Consensus 2 ~~~s~Vll~L~~~~~~~~~vifvDTg~~-----------FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~-----~~~~~ 65 (191)
T TIGR02055 2 GAEDVVLVDLAAKVRPDVKVFFLDTGRL-----------FKETYETIDQVRERYDILIDVLSPPPLTVEE-----QVKEY 65 (191)
T ss_pred ChHHHHHHHHHHhcCCCCcEEEecCCCC-----------CHHHHHHHHHHHHHhCCceEEEcCCcccHHH-----HHHHc
Confidence 7899999999999988888899988642 46889999999999999998885432 1221 11222
Q ss_pred hcCCCC----CcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhh
Q 042717 107 RCGRTP----NPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQ 182 (474)
Q Consensus 107 ~~G~tp----NPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~ 182 (474)
|... .|- .|-...|..-|.++.++ .+.++||-..++.. ....+ .+++.-....
T Consensus 66 --G~~~~~~~~~~-~cc~~~K~~Pl~~~l~~--~~~~i~G~Rr~Es~-------~R~~~-----------~~~~~~~~~~ 122 (191)
T TIGR02055 66 --GLNLFYRSVPH-ECCGIRKVEPLKRALAG--VSAWITGLRRDQSP-------TRAQA-----------PFLEIDEAFG 122 (191)
T ss_pred --CcccccccchH-HHHHHHhHHHHHHHHhc--CCEEEEEeccccCc-------hhcCC-----------ceeeecCCCC
Confidence 3210 122 34455888888887764 57888998765321 00000 0010000001
Q ss_pred hccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 183 LKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 183 L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
.-.+.||.+|+..||.+|.+++|||+.
T Consensus 123 -~~~~~Pi~~Wt~~dVw~Yi~~~~lp~n 149 (191)
T TIGR02055 123 -LVKINPLADWTSEDVWEYIADNELPYN 149 (191)
T ss_pred -eEEEEecccCCHHHHHHHHHHcCCCCC
Confidence 135799999999999999999999874
No 95
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=98.19 E-value=8.7e-06 Score=89.68 Aligned_cols=113 Identities=22% Similarity=0.250 Sum_probs=72.5
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc----C------CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEE
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA----G------HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEV 87 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~----G------~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~v 87 (474)
...|.|+||||+|||++++++++. + ..+..+++ ++. ...|...|+++|+.||.+|++
T Consensus 225 dvpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsi--g~~-----------~~~D~~~Ar~vA~~lg~~h~e 291 (578)
T PLN02549 225 DVPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCV--GLE-----------GSPDLKAAREVADYLGTVHHE 291 (578)
T ss_pred CCceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEec--CCC-----------CCCHHHHHHHHHHHhCCCCeE
Confidence 356999999999999999998775 1 24444433 321 125789999999999999999
Q ss_pred EEcch-HHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 88 VHLTD-EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 88 vd~~~-~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
+.++. ++.+. +...+.-. .+..|-..-+ .+-+-.+.+.+++.|+..|.||.-+|..
T Consensus 292 v~~~~~e~~~~-l~~~i~~l---e~~dp~~~~~-s~p~yll~r~a~~~gvkVvLsGeGaDEl 348 (578)
T PLN02549 292 FHFTVQEGIDA-IEDVIYHL---ETYDVTTIRA-STPMFLMSRKIKSLGVKMVLSGEGSDEI 348 (578)
T ss_pred EEEChHHHHHH-HHHHHHHh---cCCCCccchh-HHHHHHHHHHHHhcCCEEEEecCchHhh
Confidence 88874 33332 22212111 1222211100 1223446677888999999999999854
No 96
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=98.05 E-value=3.5e-05 Score=85.26 Aligned_cols=115 Identities=22% Similarity=0.322 Sum_probs=74.9
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCC-cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch-HHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD-EYW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~-eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~-~f~ 95 (474)
...|.+.+|||+||++.+.++++.+. .+..+++.+.... ....+|..+|+++|+.+|.+|+.+.++. ++.
T Consensus 260 d~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~--------~~~~dE~~~A~~vA~~~g~~h~~i~~~~~~~~ 331 (589)
T TIGR03104 260 DVPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVG--------GEKGDEFEYSDIIAERFHTRHHKIRIPNHRVL 331 (589)
T ss_pred CCceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCC--------CCCCChHHHHHHHHHHhCCcCeEEEcCHHHHH
Confidence 46799999999999999999988753 4667766542211 0013578999999999999999998875 333
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
+ .+..++..+. .| ...-+. +-+..+.+.+++ ++..+.||+-+|..
T Consensus 332 ~-~l~~~v~~~~---~P--~~~~~~-~~~~~l~~~a~~-~~kV~LsGeGaDEl 376 (589)
T TIGR03104 332 P-ALPEAVAAMS---EP--MVSHDC-VAFYLLSEEVSK-HVKVVQSGQGADEV 376 (589)
T ss_pred H-HHHHHHHHhC---CC--CCCchH-HHHHHHHHHHhC-CCeEEeecCchHhc
Confidence 3 3333333322 22 221111 112335556655 69999999998743
No 97
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.02 E-value=7.9e-05 Score=79.82 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=100.5
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
.+++++.|||.|| |+++++.+.+.++-.++++++.. .++..+++.+++++||++++++.-... .
T Consensus 116 ~~iavasSG~eds-vLlhl~~~~~~~ipV~flDTG~l-----------FpETy~~~d~v~~~ygl~l~~~~p~~~---~- 179 (463)
T TIGR00424 116 NDIAIAFSGAEDV-ALIEYAHLTGRPFRVFSLDTGRL-----------NPETYRFFDAVEKQYGIRIEYMFPDAV---E- 179 (463)
T ss_pred CCEEEEeccHHHH-HHHHHHHHhCCCCcEEEecCCCC-----------CHHHHHHHHHHHHHhCCceEEECCCcc---h-
Confidence 4799999988886 56788888888888899998753 468899999999999999987733211 0
Q ss_pred HhhhHHHHhcCCC----CCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccc
Q 042717 99 VSYIIEEYRCGRT----PNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYF 174 (474)
Q Consensus 99 ~~~~i~~y~~G~t----pNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyf 174 (474)
...+.+. .|.. .++. .|.+..|..-|.++.. +.+..+||-..++... ......++. .|..
T Consensus 180 ~~~~~~~--~G~~~~~~~~~~-~CC~irKVePL~raL~--~~~awitG~Rr~Qs~~---tRa~~~~ve--~d~~------ 243 (463)
T TIGR00424 180 VQALVRS--KGLFSFYEDGHQ-ECCRVRKVRPLRRALK--GLKAWITGQRKDQSPG---TRSEIPVVQ--VDPV------ 243 (463)
T ss_pred HHHHHHh--cCcccCCcCChH-HHhhHHhHHHHHHHHH--hCCcEEeeeccccCcc---ccccCCccc--cccc------
Confidence 1111111 2321 1333 3555578888888776 4567999987653210 000000000 1100
Q ss_pred ccccChh-hhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 175 LSHLSQA-QLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 175 L~~L~~~-~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
....... .-.-.+.||.+|+..||..|.++++||+.
T Consensus 244 ~~~~~~~~~~~iKvnPLa~Wt~~dVw~Yi~~~~LP~n 280 (463)
T TIGR00424 244 FEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVN 280 (463)
T ss_pred ccccccCCCceEEEeecccCCHHHHHHHHHHcCCCCC
Confidence 0000000 00136789999999999999999999984
No 98
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=98.00 E-value=3.6e-05 Score=85.79 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=74.2
Q ss_pred CCeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
...|.+.+|||+||++.+.++.++ +..+..+++..... ..+|..+|+++|+.+|++|+++.++....+
T Consensus 258 d~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~~~-----------~~dE~~~A~~vA~~~g~~h~~~~~~~~~~~ 326 (628)
T TIGR03108 258 DVPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDP-----------AFDESAYARQVAERYGTNHRVETVDPDDFS 326 (628)
T ss_pred CCcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecCCC-----------CCChHHHHHHHHHHhCCCCeEEecCHHHHH
Confidence 456899999999999999988876 34576666654210 135789999999999999999998865432
Q ss_pred hhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
.+..++..+. .|....+... ...+.+.+++ +...+.||+-+|..
T Consensus 327 -~~~~~~~~~~-----~P~~~~~~~~-~~~~~~~a~~-~~kV~LsG~GgDEl 370 (628)
T TIGR03108 327 -LVDRLAGLYD-----EPFADSSALP-TYRVCELARK-RVTVALSGDGGDEL 370 (628)
T ss_pred -HHHHHHHHhC-----CCCCCchHHH-HHHHHHHHHC-CCCEEEeccchhhc
Confidence 2333333221 2322222212 2334455554 79999999999743
No 99
>PLN02309 5'-adenylylsulfate reductase
Probab=97.99 E-value=0.00012 Score=78.35 Aligned_cols=161 Identities=18% Similarity=0.187 Sum_probs=99.8
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNV 98 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V 98 (474)
.+++++.|||.|| |+++++.+.+.++-.+++|++.. .++..+++.++.++||++++++--... .
T Consensus 111 ~~ia~~~SG~ed~-vll~l~~~~~~~ipV~flDTG~l-----------fpETy~~~d~v~~~ygl~i~~~~P~~~----~ 174 (457)
T PLN02309 111 NDIAIAFSGAEDV-ALIEYAHLTGRPFRVFSLDTGRL-----------NPETYRLFDAVEKHYGIRIEYMFPDAV----E 174 (457)
T ss_pred CCEEEEecchHHH-HHHHHHHHhCCCCcEEEecCCCC-----------CHHHHHHHHHHHHHhCCceEEECCCcc----h
Confidence 5699999977776 56678888887888899998753 468899999999999999988732211 1
Q ss_pred HhhhHHHHhcCCC----CCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccc
Q 042717 99 VSYIIEEYRCGRT----PNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYF 174 (474)
Q Consensus 99 ~~~~i~~y~~G~t----pNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyf 174 (474)
...+... .|.. .++. .|.+..|..-|.++.+. .+..+||-..++... ......++ ..|.. |
T Consensus 175 ~~~~~~~--~g~~~~~~~~~~-~Cc~irKVePL~raL~~--~~awitG~Rr~Qs~~---~Ra~l~~v--e~d~~-----~ 239 (457)
T PLN02309 175 VQALVRN--KGLFSFYEDGHQ-ECCRVRKVRPLRRALKG--LRAWITGQRKDQSPG---TRAEVPVV--QVDPV-----F 239 (457)
T ss_pred HHHHHHh--cCccccccCChH-HhhhhHhHHHHHHHHhh--CCEEEEeeccccCcc---ccccCCee--eeccc-----c
Confidence 1111121 2211 1233 35555788888877764 578999987664210 00000000 00100 0
Q ss_pred ccccChhhhccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 175 LSHLSQAQLKRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 175 L~~L~~~~L~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
-.......-.-.+.||.+|+..||..|.++++||+.
T Consensus 240 ~~~~~~~~~~lKvnPl~~Wt~~dVw~Yi~~~~lP~n 275 (457)
T PLN02309 240 EGLDGGPGSLVKWNPLANVTGNEVWNFLRTMDVPVN 275 (457)
T ss_pred cccccCCCCeeEEcccccCCHHHHHHHHHHcCCCCC
Confidence 000000010136799999999999999999999984
No 100
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=97.98 E-value=3.1e-05 Score=72.43 Aligned_cols=111 Identities=14% Similarity=0.237 Sum_probs=81.7
Q ss_pred EEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHh
Q 042717 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVS 100 (474)
Q Consensus 21 VlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~ 100 (474)
+++-+--|.||++.+..|++.|++|++++.+...++.. +...-.+.++++|+.+||++.+-+.+.+=|-..+.
T Consensus 1 lLLH~CCaPCs~~~~~~L~~~g~~vt~~fyNPNIhP~~-------Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~ 73 (176)
T PF02677_consen 1 LLLHICCAPCSTYPLERLREEGFDVTGYFYNPNIHPYE-------EYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAVK 73 (176)
T ss_pred CeeeecCccccHHHHHHHHHCCCCeEEEEeCCCCCcHH-------HHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHHh
Confidence 46677889999999999999999999999875443211 13456788999999999999998876533322221
Q ss_pred hhHHHHh-cCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEce
Q 042717 101 YIIEEYR-CGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGH 143 (474)
Q Consensus 101 ~~i~~y~-~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH 143 (474)
.+. ...-...|..|-. +|.....+.|+++|+|++.|-=
T Consensus 74 ----~~e~epE~g~RC~~Cy~-~RL~~tA~~A~e~gfd~FtTTL 112 (176)
T PF02677_consen 74 ----GLEDEPEGGKRCRVCYD-LRLEKTAQYAKELGFDYFTTTL 112 (176)
T ss_pred ----hCccCCccCchhHHHHH-HHHHHHHHHHHHcCCCEEEccc
Confidence 111 1112357999988 7888889999999999998743
No 101
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.96 E-value=4.4e-05 Score=83.66 Aligned_cols=113 Identities=23% Similarity=0.227 Sum_probs=76.7
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcC-CcEEE-EEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch-HH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAG-HSCTA-FYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD-EY 94 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G-~eV~g-v~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~-~f 94 (474)
...|.+.+|||+|||+++.++.+.. ..... +++.++.. ...|.+.|+++|+.||.+|+.+.++. ++
T Consensus 230 dvpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~-----------~~~D~~~a~~~A~~lg~~h~~~~~~~~e~ 298 (542)
T COG0367 230 DVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDS-----------DSPDAKYARAVAKFLGTPHHEIILTNEEL 298 (542)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCC-----------CCchHHHHHHHHHHhCCCcEEEeecHHHH
Confidence 4579999999999999999999873 33332 34443221 13589999999999999999988875 33
Q ss_pred HHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccc
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVV 148 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~ 148 (474)
... +..++. .-.+|++...|- =+-.+.+.+.+.|...+.+|+-||..
T Consensus 299 ~~~-~~~vv~---~~~~p~~~~~~~---ply~~~~~a~~~g~kVvLSGeGADEl 345 (542)
T COG0367 299 LNA-LPEVVK---ALDTPGGMAASI---PLYLLSRKARAEGEKVVLSGEGADEL 345 (542)
T ss_pred HHH-HHHHHh---hcCCCCcccchh---HHHHHHHhhhhcCcEEeecCccHHHH
Confidence 332 222221 112455433332 24556778888999999999999753
No 102
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00019 Score=74.70 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=74.5
Q ss_pred CeEEEEEccchhHHHHHHHHHHc--------CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEc
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA--------GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHL 90 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~--------G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~ 90 (474)
..+.|++|||.|||+.|.++.++ |-.++.+.+-.. ...|+..|++||+.+|.+||++-+
T Consensus 226 ~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaIGle-------------~SPDL~aarkVAd~igt~Hhe~~f 292 (543)
T KOG0571|consen 226 VPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAIGLE-------------DSPDLLAARKVADFIGTIHHEHTF 292 (543)
T ss_pred CceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEecCC-------------CChhHHHHHHHHHHhCCcceEEEE
Confidence 46999999999999887766443 445665555331 236899999999999999999888
Q ss_pred chHHHHhhHhhh---HHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 91 TDEYWKNVVSYI---IEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 91 ~~~f~~~V~~~~---i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
+.+=.-+.++.. ++.|.- .-+.|..- +-+|.+..+++|...|.+|.-+|.
T Consensus 293 t~qegidal~eVI~hLETYDv-----ttIRastp--myLlsr~Ikk~gvkmvlSGEGsDE 345 (543)
T KOG0571|consen 293 TIQEGIDALDEVIYHLETYDV-----TTIRASTP--MYLLSRKIKKLGVKMVLSGEGSDE 345 (543)
T ss_pred cHHHHHHHHHHHheeeecccc-----ceEecCCc--hHHHHHHHHhcceEEEEecCCchh
Confidence 753222233222 344431 12344443 356778889999999999998874
No 103
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0017 Score=66.26 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=98.4
Q ss_pred CCCCeEEEEEccchhHHHHHHHHH---Hc--------CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHc--C
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLH---SA--------GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQV--D 82 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLk---e~--------G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~L--G 82 (474)
...+.+++++|||.-|+|++..+. ++ ++.|.-+..-.++.. +....+..+++-.+. .
T Consensus 60 ~~sk~vLlv~~G~ssSlvlLd~vh~~l~q~k~~~~~~~~tv~v~~~~~~~~~----------~~~v~e~lq~l~~~~~~~ 129 (396)
T KOG2594|consen 60 TPSKNVLLVFDGGSSSLVLLDFVHLALKQLKNKRLRRDFTVLVLVVFQEFTD----------STAVFEALQELIIDNIEW 129 (396)
T ss_pred CcccceEEEecCCcchHhHHHHHHHHHHHhhhhhcCcCCceEEEEEEEeccc----------hHHHHHHHHHHHHhhccc
Confidence 345679999999999999987664 22 556655544444321 223344444444332 1
Q ss_pred CCEEE--EEcchHHHHhhHhhhH---------HHHhcCCCCCcccccch-------HHHHHHHHHHHHHcCCCEEEEcee
Q 042717 83 VPLEV--VHLTDEYWKNVVSYII---------EEYRCGRTPNPDVLCNT-------RIKFGAFMDAISSMEFDYVASGHY 144 (474)
Q Consensus 83 Ipl~v--vd~~~~f~~~V~~~~i---------~~y~~G~tpNPci~Cnr-------~iKf~~l~~~A~~~Gad~IATGH~ 144 (474)
+++.| +... +|.++ +.++. ..+..= -.+|+.-.+ .+|...+..+|.++|++.|+.||.
T Consensus 130 ~~~~V~~la~~-~~~~~-~~~~~~~~~n~El~ak~~kl--~~~~sv~~~srqDLl~~lk~kll~~vA~~~g~~~i~~g~~ 205 (396)
T KOG2594|consen 130 VRYVVSCLAPP-EKDNH-VVPVESINGNDELIAKDRKL--KLSDSVPDDSRQDLLLHLKMKLLQKVAAENGYNRIVLGDS 205 (396)
T ss_pred cceEEEecCch-HhhcC-cccccccCCCceeecchhhc--ccccccccchHHHHHHHHHHHHHHHHHHHcCCCEEEecCc
Confidence 22333 2222 33332 11110 111111 124544433 467778888999999999999999
Q ss_pred cccccCccCCCchhhHHhhhcCCcccccccccccChhhh--ccccccccCCCHHHHHHHHHHcCCCC
Q 042717 145 AKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQL--KRLIFPLGCISKEEVRKFATQFDLPN 209 (474)
Q Consensus 145 a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L--~~~i~PL~~ltK~EVr~lA~~~GLp~ 209 (474)
..+ -....+-..+.+.+---+.++..+..... .++++||.++.+.||..|..--|+++
T Consensus 206 ~t~-------la~~vlt~v~~GRG~sis~~v~~~d~r~~~d~~llrPLrDl~~~Ei~~y~~l~~l~~ 265 (396)
T KOG2594|consen 206 TTD-------LASHVLTAVVKGRGGSISTDVQVVDKRPKGDVKLLRPLRDLLSLEITSYCLLDGLAY 265 (396)
T ss_pred hhH-------HHHHHHHHHHhccCccceehhhhhccccCCCceeehhHHHHHHHHHHHHHHhhcCCc
Confidence 863 22222222222322223333333333322 57899999999999999999999984
No 104
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.0023 Score=60.22 Aligned_cols=115 Identities=12% Similarity=0.141 Sum_probs=83.3
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc-hH-HH
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT-DE-YW 95 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~-~~-f~ 95 (474)
..+||+-...+.||+.++--|.+.|.++++++.+...++.. +-..-.+..+++|+++||++..-|.. .+ |.
T Consensus 3 ~~kiLlH~CCAPcs~y~le~l~~~~~~i~~yFYNPNIhP~~-------EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w~ 75 (204)
T COG1636 3 RPKLLLHSCCAPCSGYVLEKLRDSGIKITIYFYNPNIHPLS-------EYELRKEEVKRFAEKFGINFIEGDYEDLEKWF 75 (204)
T ss_pred CCeeEEEeecCCCcHHHHHHHHhcCcceEEEEeCCCCCchH-------HHHHHHHHHHHHHHHcCCeeeecCcccHHHHH
Confidence 46899999999999999999999999998877764332210 01234567889999999999988873 23 44
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEcee
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~ 144 (474)
+.|-. +-++ +.--..|..|.. +|+..-.+.|.++|++++.|--.
T Consensus 76 ~~vKg-~E~E---pE~G~RC~~Cfd-~Rle~tA~~A~e~G~d~ftttL~ 119 (204)
T COG1636 76 ERVKG-MEDE---PEGGKRCTMCFD-MRLEKTAKKAKELGFDVFTTTLL 119 (204)
T ss_pred HHhhc-chhC---CCCCchhHhHHH-HHHHHHHHHHHHcCCchhhhhee
Confidence 33322 1111 122357999987 88999999999999999877543
No 105
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=95.83 E-value=0.049 Score=52.63 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=66.9
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCC-HHhHHHHHHHHHHcCCCEEEEEcchHHHHh
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPW-EEDMKYAKAVCDQVDVPLEVVHLTDEYWKN 97 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s-~~d~~~a~~va~~LGIpl~vvd~~~~f~~~ 97 (474)
+||+..+|||+||...+..+.+.|++++|+.--+... +....-.+... .---+.+.-+++.+++|++.-.+.-.-.+.
T Consensus 1 MrvvaLiSGGKDScynmm~cv~~gHeiVaLanl~p~~-d~~delDSyMyQtVGh~~i~lyaecm~lPlyrr~i~g~s~nq 79 (277)
T KOG2316|consen 1 MRVVALISGGKDSCYNMMCCVRLGHEIVALANLHPKE-DESDELDSYMYQTVGHDVIDLYAECMGLPLYRRRIRGRSINQ 79 (277)
T ss_pred CcEEEEEeCChHHHHHHHHHHHcCCeeeeeecccCCc-ccchhHHHHHHHhhhHHHHHHHHHHhcCceeeeeccCccccc
Confidence 5899999999999999999999999999875333211 10000000000 001234567899999999987765321111
Q ss_pred hHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHc-CCCEEEEceecc
Q 042717 98 VVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSM-EFDYVASGHYAK 146 (474)
Q Consensus 98 V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~-Gad~IATGH~a~ 146 (474)
-. .|. .|+.--+ .=-|.++...-++. ..+.|.+|..+.
T Consensus 80 ~l-----~Y~--~t~~DEv----EDLy~ll~~VK~~~p~~eaVS~GAIlS 118 (277)
T KOG2316|consen 80 KL-----QYT--KTEGDEV----EDLYELLKTVKEKIPDVEAVSVGAILS 118 (277)
T ss_pred cc-----ccc--cCCCchH----HHHHHHHHHHHhhCCCceeeehhhhHh
Confidence 11 111 1211000 11256555555566 778899998775
No 106
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=95.73 E-value=0.011 Score=60.47 Aligned_cols=53 Identities=23% Similarity=0.397 Sum_probs=35.9
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHc----CC-cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHH
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSA----GH-SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQ 80 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~----G~-eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~ 80 (474)
.-.+|.|+||||+||.|+++|+.+. |. .|..+|++.-.+ -...++++++.-..
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~Q-----------Ys~TidyV~em~~~ 83 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQ-----------YSCTIDYVQEMRES 83 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhh-----------hhhHHHHHHHHHhc
Confidence 3468999999999999999998764 65 455555553111 12346666666654
No 107
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=93.25 E-value=0.13 Score=54.57 Aligned_cols=23 Identities=52% Similarity=0.674 Sum_probs=21.2
Q ss_pred CeEEEEEccchhHHHHHHHHHHc
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA 41 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~ 41 (474)
.+|+|.+|||+||+++|.++.+.
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~ 273 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYV 273 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhh
Confidence 57999999999999999999875
No 108
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=92.61 E-value=1.4 Score=42.53 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=96.9
Q ss_pred EEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC-CCEEEEEcch-----HH
Q 042717 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD-VPLEVVHLTD-----EY 94 (474)
Q Consensus 21 VlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG-Ipl~vvd~~~-----~f 94 (474)
+..++||--| .++..+|...|-.+..++++++.. .++.......+-+++| |+.++.-... .|
T Consensus 49 ~q~a~~G~~~-lvlid~~~~~~~~~~l~~idT~~~-----------~PeT~~l~d~VekkY~~i~I~~~~pd~~e~ea~~ 116 (261)
T KOG0189|consen 49 FQTAASGLEG-LVLIDMLSKTGRPFRLFFIDTLHH-----------FPETLRLFDAVEKKYGNIRIHVYFPDAVEVEALF 116 (261)
T ss_pred HHHHhccccc-hHHHHHHHHcCCCceeEEeecccc-----------ChHHHHHHHHHHHhcCceEEEEEcchhHHHHHHH
Confidence 4456777555 667788888887777788887532 3577888888999999 9988875543 22
Q ss_pred HHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCccccccc
Q 042717 95 WKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYF 174 (474)
Q Consensus 95 ~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyf 174 (474)
..+-.. .-|..|. ..|.+..|.+-+.++.+.++...++||...++. ++. . +
T Consensus 117 ~~K~~~---~~~E~~~-----q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~--------gtR------s----e--- 167 (261)
T KOG0189|consen 117 ASKGGF---SLWEDDH-----QEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQG--------GTR------S----E--- 167 (261)
T ss_pred Hhccch---hheecCc-----hhhhhhhhccHHHHHhhccceeeEEecccccCC--------Ccc------c----c---
Confidence 221111 1133332 235566777888888888889999999876532 110 0 0
Q ss_pred ccccChhhh--ccccccccCCCHHHHHHHHHHcCCCCc
Q 042717 175 LSHLSQAQL--KRLIFPLGCISKEEVRKFATQFDLPNK 210 (474)
Q Consensus 175 L~~L~~~~L--~~~i~PL~~ltK~EVr~lA~~~GLp~~ 210 (474)
|.-+.-+.. .-.+-||.+++=.+|..|.+.+++|+-
T Consensus 168 lpiVqvD~~fellK~NPlaN~~~~dV~nyi~t~nVP~N 205 (261)
T KOG0189|consen 168 LPIVQVDPVFELLKINPLANWEFNDVWNYIRTNNVPYN 205 (261)
T ss_pred cceEEecCccceeeecccccccHHHHHHHHHhcCCcHH
Confidence 100000000 135789999999999999999999984
No 109
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=90.77 E-value=0.4 Score=41.13 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=39.0
Q ss_pred cccccccCCCHHHHHHHHHHcCCCCcCCCCCcccccccccc----hHHHHHhhhccCCCcE
Q 042717 185 RLIFPLGCISKEEVRKFATQFDLPNKDRKDSQGICFLGKIK----FSEFVARHIGEMEGVI 241 (474)
Q Consensus 185 ~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~----~~~fL~~~~~~~~G~i 241 (474)
..|+||..++++||..||..+|||+.. ..|.+.... ++++|.++....||..
T Consensus 2 ~rIRPL~~v~E~ei~~ya~~~~lp~~~-----~~CP~~~~a~R~~~k~~L~~LE~~~P~~k 57 (104)
T TIGR00269 2 PRIKPLRYIPEKEVVLYAFLNELKVHL-----DECPYSSLSVRARIRDFLYDLENKKPGVK 57 (104)
T ss_pred CcccccccCCHHHHHHHHHHcCCCcCC-----CCCCCCCCCchHHHHHHHHHHHHHCcChH
Confidence 458999999999999999999999864 348765544 4556666555567743
No 110
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=90.13 E-value=4.2 Score=34.65 Aligned_cols=92 Identities=10% Similarity=0.136 Sum_probs=59.0
Q ss_pred eEEEEEccchhHHHHHHHH----HHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 20 KVAVLLSGGVDSSVALRLL----HSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LL----ke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
+|+|+++|...|--++.+. ++.+-+++.+|+........ .....+.++.+++.+++.+++..++.-
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~----- 70 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRL-----SEAERRRLAEALRLAEELGAEVVTLPG----- 70 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccC-----CHHHHHHHHHHHHHHHHcCCEEEEEeC-----
Confidence 5899999988876655444 33478899999875432100 011234456677777887775443321
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~ 146 (474)
+ + . ...+.+++++.++|.|+.|++..
T Consensus 71 -------------~---~--------~-~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 71 -------------D---D--------V-AEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred -------------C---c--------H-HHHHHHHHHHcCCCEEEeCCCCC
Confidence 1 0 1 35577889999999999999864
No 111
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=89.97 E-value=3.2 Score=44.88 Aligned_cols=91 Identities=23% Similarity=0.309 Sum_probs=50.7
Q ss_pred eEEEEEccchhHHHHHHHHH---H-------cC-----CcEEEEEEEcCCCC-Cccc---------cc-CCCCCHHhHHH
Q 042717 20 KVAVLLSGGVDSSVALRLLH---S-------AG-----HSCTAFYLKIWFQE-DFEN---------FW-TECPWEEDMKY 73 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLk---e-------~G-----~eV~gv~~~~~~~~-~~~~---------~~-~~c~s~~d~~~ 73 (474)
-..+-+|||+||+.+|.+.. + .| .+|..+.-+....+ +... |. +.-+|++....
T Consensus 351 GfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~r 430 (706)
T KOG2303|consen 351 GFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSENSSKETRRR 430 (706)
T ss_pred ceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccccccHHHHHH
Confidence 47889999999998876542 1 13 33333333211111 1000 00 12246677889
Q ss_pred HHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCC
Q 042717 74 AKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPN 113 (474)
Q Consensus 74 a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpN 113 (474)
|+.+|+++|--|.-+.++.. -..|+.-| ....|.+|.
T Consensus 431 ak~La~~igs~H~~i~iD~~-vsavl~lF--~~vtGk~P~ 467 (706)
T KOG2303|consen 431 AKELANQIGSYHIDLNIDTA-VSAVLSLF--NLVTGKTPR 467 (706)
T ss_pred HHHHHHhhcceeeeeeehHH-HHHHHHHH--HHHhCCCcc
Confidence 99999999987777777542 22333322 223466654
No 112
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=86.35 E-value=3.2 Score=34.43 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=29.6
Q ss_pred CEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEee
Q 042717 347 NIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILE 382 (474)
Q Consensus 347 ~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~ 382 (474)
..+.+.|++|. .+.+|+-.+|=+++..+|+|+|..
T Consensus 58 ~~v~i~l~~p~-~~~~g~rf~lR~~~~tvg~G~V~~ 92 (93)
T cd03706 58 TKVTLILRRPM-VLEKGQRFTLRDGNRTIGTGLVTD 92 (93)
T ss_pred EEEEEEECCcE-EEeeCCEEEEEECCEEEEEEEEEe
Confidence 45677888997 778999999988889999999964
No 113
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=86.17 E-value=4.4 Score=43.86 Aligned_cols=112 Identities=16% Similarity=0.079 Sum_probs=65.9
Q ss_pred ecccccCCCCCceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCC-----------C--cccccceeeeecc
Q 042717 261 IGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL-----------P--PEEISRLQCKVRH 327 (474)
Q Consensus 261 iGQR~Gl~i~~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~-----------~--~~~~~~~~~kiR~ 327 (474)
-|||-|+.+...+ -|...|...+.|++..+.. + ...+.+.+ .+.|+... + ..-.....+.+.+
T Consensus 322 aG~~vai~l~ld~-~v~~~dv~rG~Vl~~~~~~-~-~~~~~~~a-~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~ 397 (460)
T PTZ00327 322 PGGLIGVGTTIDP-TLTRADRLVGQVLGYPGKL-P-EVYAEIEI-QYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINI 397 (460)
T ss_pred CCCEEEEEeccCC-CcchhhcccccEEEcCCCC-C-ceeEEEEE-EEEEecccccccccccccccCCcccCCCCEEEEEe
Confidence 4666655543111 1334566678888775432 1 12334433 47787531 0 0001123444555
Q ss_pred CCCccceEEEEeeeecCCCC-EEEEEecCCccCCCCCceEEEEe---C-CEEEEeeEEee
Q 042717 328 GPGFYNCNLMIEHVEDGGEN-IAVVQLSEDDQGLAAGQFAAFYQ---G-TRCIGSGVILE 382 (474)
Q Consensus 328 ~~~~~~c~v~~~~~~~~~~~-~~~v~f~ep~~avapGQ~av~Y~---g-~~~lGgG~I~~ 382 (474)
......|+|... +.+ .+.++|++|. ++.+||-.+|=. . -+.+|||+|..
T Consensus 398 gt~~~~~~i~~i-----~~~~~~~l~l~~P~-~~~~gdr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 398 GSTTTGGRVVGI-----KDDGIAKLELTTPV-CTSVGEKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred cccEEEEEEEEe-----CCCeEEEEEECccE-eccCCCEEEEEeccCCCcEEEEEEEEcC
Confidence 555578888865 233 7888999996 888999999953 3 37999999974
No 114
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=85.85 E-value=2.3 Score=35.70 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=29.5
Q ss_pred CCEEEEEecCCccCCCCCceEEEEeCC--EEEEeeEE
Q 042717 346 ENIAVVQLSEDDQGLAAGQFAAFYQGT--RCIGSGVI 380 (474)
Q Consensus 346 ~~~~~v~f~ep~~avapGQ~av~Y~g~--~~lGgG~I 380 (474)
...+.+.|++|. ++.+||-.++=+++ ..+|||+|
T Consensus 62 ~~~a~l~l~~pl-~~~~gdrfilR~~~~~~tiggG~V 97 (97)
T cd04094 62 EALAQLRLEEPL-VALRGDRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEEEEEECCcE-eecCCCeEEEeeCCCCeEEEeEEC
Confidence 346789999996 88899999998888 89999986
No 115
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=84.37 E-value=3.2 Score=34.12 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=27.9
Q ss_pred CCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEE
Q 042717 346 ENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 380 (474)
Q Consensus 346 ~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I 380 (474)
...+.+.|++|. .+.+|+-.+|=++...+|+|+|
T Consensus 57 ~~~v~l~l~~pv-~~~~~~rf~lR~~~~tig~G~V 90 (90)
T cd03707 57 NVKMTVELIHPI-ALEKGLRFAIREGGRTVGAGVI 90 (90)
T ss_pred EEEEEEEECCcE-EEecCCEEEEecCCcEEEEEEC
Confidence 345677888996 7789999999788889999986
No 116
>PRK10490 sensor protein KdpD; Provisional
Probab=84.06 E-value=7.8 Score=45.46 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=45.6
Q ss_pred CCCeEEEEEccchhHHHHH----HHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEc
Q 042717 17 KGLKVAVLLSGGVDSSVAL----RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHL 90 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa----~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~ 90 (474)
...+|+|++||+..|.-+. .++.+.+-+.+++|+......... -.....+....++|++||.+.+++.-
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~-----~~~~~~l~~~~~lA~~lGa~~~~~~~ 321 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLP-----EKKRRAILSALRLAQELGAETATLSD 321 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCC-----HHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4578999999998886554 344445789999999864211110 01123344555799999999777654
No 117
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=83.55 E-value=16 Score=31.03 Aligned_cols=99 Identities=9% Similarity=0.075 Sum_probs=54.1
Q ss_pred eEEEEEccchhHHHHHH----HHHHcCCcEEEEEEEcCCCCCc-cccc-CCCCCHHhHHHHHHHHHHcCCCEEEEEcchH
Q 042717 20 KVAVLLSGGVDSSVALR----LLHSAGHSCTAFYLKIWFQEDF-ENFW-TECPWEEDMKYAKAVCDQVDVPLEVVHLTDE 93 (474)
Q Consensus 20 kVlValSGGvDSsvaa~----LLke~G~eV~gv~~~~~~~~~~-~~~~-~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~ 93 (474)
+|+|++.|.-+|.-++. +.+..+.+++.+|+........ .... ..-...+..+.+.+.++..|++.+.....
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 78 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRI-- 78 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEe--
Confidence 58999988877654443 3333478999999865321100 0000 00001122334444555556554433221
Q ss_pred HHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecc
Q 042717 94 YWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 94 f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~ 146 (474)
+.. . ...+.+++++.++|.|+.|++..
T Consensus 79 ------------------------~~~-~-~~~I~~~a~~~~~dlIV~G~~~~ 105 (132)
T cd01988 79 ------------------------DHD-I-ASGILRTAKERQADLIIMGWHGS 105 (132)
T ss_pred ------------------------cCC-H-HHHHHHHHHhcCCCEEEEecCCC
Confidence 111 2 35677889999999999999864
No 118
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=80.92 E-value=7.2 Score=41.36 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=57.3
Q ss_pred EecCCCeEEEecCCCCccceeeEEEEcceeeccCC----------CcccccceeeeeccCCCccceEEEEeeeecCCCCE
Q 042717 279 KDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL----------PPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENI 348 (474)
Q Consensus 279 ~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~----------~~~~~~~~~~kiR~~~~~~~c~v~~~~~~~~~~~~ 348 (474)
.|...+.|++..+.. + ...+.+.+ .+.|+... +.. ....+.+.+....++|++... +++.
T Consensus 301 ~dv~~G~vl~~~~~~-~-~~~~~f~a-~i~~l~~~~~~~~~~~~~~i~--~g~~~~l~~gt~~~~~~v~~~-----~~~~ 370 (406)
T TIGR03680 301 ADALAGQVVGKPGTL-P-PVWESLEL-EVHLLERVVGTEEELKVEPIK--TGEVLMLNVGTATTVGVVTSA-----RKDE 370 (406)
T ss_pred HHcccccEEEcCCCC-C-CceeEEEE-EEEEEecccCcccccccccCC--CCCEEEEEEccceEEEEEEEc-----CCcE
Confidence 344556677665421 1 12344444 46665321 111 123445555566688998865 3568
Q ss_pred EEEEecCCccCCCCCceEEEE--eCC--EEEEeeEEe
Q 042717 349 AVVQLSEDDQGLAAGQFAAFY--QGT--RCIGSGVIL 381 (474)
Q Consensus 349 ~~v~f~ep~~avapGQ~av~Y--~g~--~~lGgG~I~ 381 (474)
+.|+|.+| -.+.+||-.++- .+. +.+|.|.|.
T Consensus 371 ~~l~l~~p-~~~~~g~r~~~~~~~~~~~~~~g~g~~~ 406 (406)
T TIGR03680 371 IEVKLKRP-VCAEEGDRVAISRRVGGRWRLIGYGIIK 406 (406)
T ss_pred EEEEECCc-EEcCCCCEEEEEEecCCceEEEEEEEeC
Confidence 89999999 678899999983 355 789999883
No 119
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=80.33 E-value=21 Score=31.18 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.3
Q ss_pred eEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEc
Q 042717 20 KVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKI 52 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~ 52 (474)
+|+|++.|.-.|.-++....+. |.+++.+|+..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~ 37 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHP 37 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEecc
Confidence 5899999999888887766553 77888888854
No 120
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=74.80 E-value=22 Score=36.06 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=54.7
Q ss_pred CCCCeEEEEEccchhHHHHHHH-HHHc---CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRL-LHSA---GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~L-Lke~---G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
.+.+||+|..||+ .|.+-+.+ ..+. +.+|.+|.-+. . ++..+|+++|||+++++..
T Consensus 87 ~~~~ri~vl~Sg~-g~nl~al~~~~~~~~~~~~i~~visn~----------------~---~~~~lA~~~gIp~~~~~~~ 146 (286)
T PRK13011 87 AARPKVLIMVSKF-DHCLNDLLYRWRIGELPMDIVGVVSNH----------------P---DLEPLAAWHGIPFHHFPIT 146 (286)
T ss_pred ccCceEEEEEcCC-cccHHHHHHHHHcCCCCcEEEEEEECC----------------c---cHHHHHHHhCCCEEEeCCC
Confidence 3457999999997 44333322 2333 46777766542 1 2556699999999998753
Q ss_pred hHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 92 DEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 92 ~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
.. . ..++ -..+.++.++.++|+++...|.++
T Consensus 147 ~~-~-------~~~~-----------------~~~~~~~l~~~~~Dlivlagy~~i 177 (286)
T PRK13011 147 PD-T-------KPQQ-----------------EAQVLDVVEESGAELVVLARYMQV 177 (286)
T ss_pred cC-c-------hhhh-----------------HHHHHHHHHHhCcCEEEEeChhhh
Confidence 21 0 0000 123566677789999999888765
No 121
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=71.71 E-value=26 Score=35.31 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=61.7
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHc-----CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSA-----GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHL 90 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~-----G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~ 90 (474)
...+||++.+| +-+-++..||-++ ..+|.+|--++ .+.+.+++..|||++.+..
T Consensus 88 ~~~~ri~i~VS--K~~HCL~DLL~r~~~g~L~~eI~~VIsNH-------------------~dl~~~v~~~~IPfhhip~ 146 (287)
T COG0788 88 AQRKRIAILVS--KEDHCLGDLLYRWRIGELPAEIVAVISNH-------------------DDLRPLVERFDIPFHHIPV 146 (287)
T ss_pred ccCceEEEEEe--chHHHHHHHHHHHhcCCcCCceEEEEcCC-------------------HHHHHHHHHcCCCeeeccC
Confidence 34578999988 6677788888663 45777765442 2477899999999999988
Q ss_pred chHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 91 TDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 91 ~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
+.+-+. --...+++..++.|+|+|+..-|.++
T Consensus 147 ~~~~k~-------------------------e~E~~~~~ll~~~~~DlvVLARYMqI 178 (287)
T COG0788 147 TKENKA-------------------------EAEARLLELLEEYGADLVVLARYMQI 178 (287)
T ss_pred CCCcch-------------------------HHHHHHHHHHHHhCCCEEeehhhHhh
Confidence 642110 01345677888889999999888764
No 122
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=71.57 E-value=34 Score=39.61 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=51.1
Q ss_pred CCCCeEEEEEccchhHHHHH----HHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 16 QKGLKVAVLLSGGVDSSVAL----RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa----~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
....+|+|++||+..|.-+. .+..+.+-+.+++|++.+...... -.....+..+.++|++||-+..++.-.
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~-----~~~~~~l~~~~~Lae~lGae~~~l~~~ 320 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLS-----EKEARRLHENLRLAEELGAEIVTLYGG 320 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccccc-----HHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 34578999999999997654 344445778999999986532110 012456778899999999999988653
No 123
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=70.46 E-value=17 Score=31.04 Aligned_cols=72 Identities=17% Similarity=0.047 Sum_probs=43.6
Q ss_pred eEEEEEccchhHHHHHHHHHHc----CCcEEEEEEEcCCCC-CcccccC---CCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 20 KVAVLLSGGVDSSVALRLLHSA----GHSCTAFYLKIWFQE-DFENFWT---ECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~----G~eV~gv~~~~~~~~-~~~~~~~---~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
+|+++++||.=|++++.-+++. |.++...-.....-+ ....++- .-.-.-..+.+++.++..|||+.++|..
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~ 81 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGK 81 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHH
Confidence 6899999999999999877654 766543333221100 0000000 0001234667889999999999999863
No 124
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=70.41 E-value=30 Score=33.11 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=34.5
Q ss_pred CeEEEEEccchhHHHHHHHHHHcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEc
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHL 90 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~ 90 (474)
+||+|.+||+-...-++.-..+.+ .+|..+.-+.. .| .+...|+++|||+..++.
T Consensus 2 ~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~----------~~-------~~~~~a~~~gIp~~~~~~ 59 (200)
T PRK05647 2 KRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP----------DA-------YGLERAEAAGIPTFVLDH 59 (200)
T ss_pred ceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc----------cc-------hHHHHHHHcCCCEEEECc
Confidence 689999999855444443333333 45555433211 11 267889999999988764
No 125
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=70.29 E-value=22 Score=39.97 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=62.5
Q ss_pred eecccccCCCCCceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeeccCCCccceEEEEe
Q 042717 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIE 339 (474)
Q Consensus 260 TiGQR~Gl~i~~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR~~~~~~~c~v~~~ 339 (474)
.-|||-++.+.+. +-..+...+.|++..... .. ...+ ..|+....|-. ....+.+-+...-.+|++...
T Consensus 232 ~aG~rval~l~g~---~~~~~i~rGdvl~~~~~~--~~-~~~~----~~~l~~~~~l~-~~~~~~~~~gt~~~~~~i~~l 300 (614)
T PRK10512 232 QAGQRIALNIAGD---AEKEQINRGDWLLADAPP--EP-FTRV----IVELQTHTPLT-QWQPLHIHHAASHVTGRVSLL 300 (614)
T ss_pred eCCCeEEEEecCC---CChhhCCCcCEEeCCCCC--cc-ceeE----EEEEcCCccCC-CCCEEEEEEcccEEEEEEEEc
Confidence 4467666665431 122355667777765321 11 1121 12222111111 112233444455578888875
Q ss_pred eeecCCCCEEEEEecCCccCCCCCceEEEEe--CCEEEEeeEEeeecc
Q 042717 340 HVEDGGENIAVVQLSEDDQGLAAGQFAAFYQ--GTRCIGSGVILESWD 385 (474)
Q Consensus 340 ~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~--g~~~lGgG~I~~~~~ 385 (474)
+...+.+.|++|. .+.+||-.++=+ ....+|||+|.....
T Consensus 301 -----~~~~~~l~l~~p~-~~~~gdr~ilr~~s~~~tigGg~Vld~~~ 342 (614)
T PRK10512 301 -----EDNLAELVLDTPL-WLADNDRLVLRDISARNTLAGARVVMLNP 342 (614)
T ss_pred -----CCeEEEEEECCcc-cccCCCEEEEEeCCCCEEEEEEEEcccCC
Confidence 3457889999995 777999999865 668999999986544
No 126
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=69.44 E-value=25 Score=37.59 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=59.6
Q ss_pred EEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhh
Q 042717 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYI 102 (474)
Q Consensus 23 ValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~ 102 (474)
|.+|||++.++ .-..+.|.+...++..+..... ...-++.+++..++.+++.|+....+-....|.-.+
T Consensus 137 vSiaGG~~~a~--~~a~~~g~~afqiF~~npr~w~-----~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINL---- 205 (413)
T PTZ00372 137 VSASGGVDNSP--INAYNIAGQAFALFLKNQRTWN-----SPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINL---- 205 (413)
T ss_pred EeccccHHHHH--HHHHHcCCCEEEEEcCCCccCC-----CCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecC----
Confidence 55799999854 4466778899999887653211 112356889999999999988532111111121000
Q ss_pred HHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEE--ceec
Q 042717 103 IEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVAS--GHYA 145 (474)
Q Consensus 103 i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IAT--GH~a 145 (474)
+ .|++-..=...-.|..-++.|.++|+++|++ |++.
T Consensus 206 ------A-Spd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs~~ 243 (413)
T PTZ00372 206 ------A-NPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGSTV 243 (413)
T ss_pred ------C-CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 0 1222211111111344456788999998874 5543
No 127
>PRK04148 hypothetical protein; Provisional
Probab=69.40 E-value=34 Score=30.87 Aligned_cols=78 Identities=10% Similarity=0.116 Sum_probs=45.5
Q ss_pred HHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCc
Q 042717 35 LRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNP 114 (474)
Q Consensus 35 a~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNP 114 (474)
|..|.+.|++|+++-++ +. +.+.|+..++...+-|+-+ +-.+-|....-- =
T Consensus 32 A~~L~~~G~~ViaIDi~----------------~~----aV~~a~~~~~~~v~dDlf~--------p~~~~y~~a~li-y 82 (134)
T PRK04148 32 AKKLKESGFDVIVIDIN----------------EK----AVEKAKKLGLNAFVDDLFN--------PNLEIYKNAKLI-Y 82 (134)
T ss_pred HHHHHHCCCEEEEEECC----------------HH----HHHHHHHhCCeEEECcCCC--------CCHHHHhcCCEE-E
Confidence 44566889999987543 22 3344566687777777642 222333222110 0
Q ss_pred ccccchHHHHHHHHHHHHHcCCCEEEEc
Q 042717 115 DVLCNTRIKFGAFMDAISSMEFDYVASG 142 (474)
Q Consensus 115 ci~Cnr~iKf~~l~~~A~~~Gad~IATG 142 (474)
-+.|-+.+ ...+.+.|++.|++.+++=
T Consensus 83 sirpp~el-~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 83 SIRPPRDL-QPFILELAKKINVPLIIKP 109 (134)
T ss_pred EeCCCHHH-HHHHHHHHHHcCCCEEEEc
Confidence 11223344 4778899999999999873
No 128
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=67.68 E-value=67 Score=26.31 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=53.8
Q ss_pred eEEEEEccchhHHHHHHHH----HHcCCcEEEEEEEcCCCCCccc-ccCC-CCCHHhHHHHHHHHHHcCCCEEEEEcchH
Q 042717 20 KVAVLLSGGVDSSVALRLL----HSAGHSCTAFYLKIWFQEDFEN-FWTE-CPWEEDMKYAKAVCDQVDVPLEVVHLTDE 93 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LL----ke~G~eV~gv~~~~~~~~~~~~-~~~~-c~s~~d~~~a~~va~~LGIpl~vvd~~~~ 93 (474)
+|+|+++++..+..++..+ +..+.+++.+++.......... .... ....+.++.....+...|++.+..-..
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 78 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLE-- 78 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEec--
Confidence 5899999877776655443 3448899999986432110000 0000 001112223333333456665443221
Q ss_pred HHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecc
Q 042717 94 YWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 94 f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~ 146 (474)
|. . ...+.+++++.++|.|+.|.+..
T Consensus 79 ---------------~~-----------~-~~~i~~~~~~~~~dlvvig~~~~ 104 (130)
T cd00293 79 ---------------GD-----------P-AEAILEAAEELGADLIVMGSRGR 104 (130)
T ss_pred ---------------CC-----------C-HHHHHHHHHHcCCCEEEEcCCCC
Confidence 11 0 35677889999999999998754
No 129
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=66.99 E-value=18 Score=30.40 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=44.9
Q ss_pred CCeEEEEEccchhHHHHHHHHHH----cCCcEEEEEEEcCCCCC-ccccc---CCCCCHHhHHHHHHHHHHcCCCEEEEE
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHS----AGHSCTAFYLKIWFQED-FENFW---TECPWEEDMKYAKAVCDQVDVPLEVVH 89 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke----~G~eV~gv~~~~~~~~~-~~~~~---~~c~s~~d~~~a~~va~~LGIpl~vvd 89 (474)
.++|++++++|.=|++++.-+++ .|+++..-+.....-.+ ...++ ..-.-....+.+++.++..|+|..+++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeC
Confidence 46899999999999988866655 47765444443211000 00000 000112356778888999999999987
Q ss_pred cc
Q 042717 90 LT 91 (474)
Q Consensus 90 ~~ 91 (474)
..
T Consensus 83 ~~ 84 (95)
T TIGR00853 83 GA 84 (95)
T ss_pred hh
Confidence 63
No 130
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=66.48 E-value=19 Score=37.87 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=29.1
Q ss_pred EEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeee
Q 042717 348 IAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 383 (474)
Q Consensus 348 ~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~ 383 (474)
.++++|++|. .+.+|+-.+|=++...+|+|+|.+.
T Consensus 358 ~v~~~~~~p~-~~~~~~rfilR~~g~tv~~G~V~~v 392 (394)
T TIGR00485 358 KMTVELISPI-ALEQGMRFAIREGGRTVGAGVVSKI 392 (394)
T ss_pred EEEEEECceE-EEeECCEEEEecCCcEEEEEEEEEe
Confidence 4677788885 7889999999888899999998764
No 131
>PLN03126 Elongation factor Tu; Provisional
Probab=66.26 E-value=34 Score=37.33 Aligned_cols=113 Identities=21% Similarity=0.202 Sum_probs=61.7
Q ss_pred eecccccCCCCCceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCC------CcccccceeeeeccCCCccc
Q 042717 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL------PPEEISRLQCKVRHGPGFYN 333 (474)
Q Consensus 260 TiGQR~Gl~i~~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~------~~~~~~~~~~kiR~~~~~~~ 333 (474)
.-|||-||.+.+ +-..|...+.|+...+. +. ..+.+ ...+.|+... +.....++...+. ..-.+
T Consensus 349 ~aG~~v~l~L~~----i~~~di~rG~VL~~~~~--~~-~~~~F-~A~i~vL~~~~gg~~~~I~~G~~~~lhig--t~~~~ 418 (478)
T PLN03126 349 LAGDNVGLLLRG----IQKADIQRGMVLAKPGS--IT-PHTKF-EAIVYVLKKEEGGRHSPFFAGYRPQFYMR--TTDVT 418 (478)
T ss_pred eCCceeeeeccC----CcHHHcCCccEEecCCC--CC-ceEEE-EEEEEEecccccCCcccccCCcEEEEEEE--ecEEE
Confidence 347777666643 11245567777766532 11 12333 3456676532 1111122222222 22345
Q ss_pred eEEEEeeee---------cCCCCEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeee
Q 042717 334 CNLMIEHVE---------DGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 383 (474)
Q Consensus 334 c~v~~~~~~---------~~~~~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~ 383 (474)
|++...... .++...++++|++|. .+.+|+-.+|=+++..+|+|+|...
T Consensus 419 ~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi-~~~~~~RfilR~~~~Tva~G~V~~v 476 (478)
T PLN03126 419 GKVTSIMNDKDEESKMVMPGDRVKMVVELIVPV-ACEQGMRFAIREGGKTVGAGVIQSI 476 (478)
T ss_pred EEEEEEecccCCCccEeCCCCEEEEEEEECCeE-EEccCCEEEEecCCceEEEEEEEEe
Confidence 666543210 011124567778885 5779999999888899999999754
No 132
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=66.09 E-value=36 Score=34.48 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=54.6
Q ss_pred CCCeEEEEEccchhHHHHHHH-HHHc---CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 17 KGLKVAVLLSGGVDSSVALRL-LHSA---GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~L-Lke~---G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
..+||+|..||+ .|.+-+.+ ..+. +.+|.+|.-+. ..+..+|+++|||+++++...
T Consensus 88 ~~~ri~vl~Sg~-gsnl~al~~~~~~~~~~~~i~~visn~-------------------~~~~~lA~~~gIp~~~~~~~~ 147 (286)
T PRK06027 88 ERKRVVILVSKE-DHCLGDLLWRWRSGELPVEIAAVISNH-------------------DDLRSLVERFGIPFHHVPVTK 147 (286)
T ss_pred cCcEEEEEEcCC-CCCHHHHHHHHHcCCCCcEEEEEEEcC-------------------hhHHHHHHHhCCCEEEeccCc
Confidence 457899999999 44443322 2233 46777776542 134556999999999987642
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
+.. ++ --..+.++.++.+.|+|+..-|.++
T Consensus 148 -~~~-------~~-----------------~~~~~~~~l~~~~~Dlivlagy~~i 177 (286)
T PRK06027 148 -ETK-------AE-----------------AEARLLELIDEYQPDLVVLARYMQI 177 (286)
T ss_pred -ccc-------ch-----------------hHHHHHHHHHHhCCCEEEEecchhh
Confidence 000 00 0123566677788999998888764
No 133
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=65.83 E-value=21 Score=30.64 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=44.1
Q ss_pred CeEEEEEccchhHHHHHHHHHH----cCCcEEEEEEEcCCCCC---cccccCCCCC---HHhHHHHHHHHHHcCCCEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHS----AGHSCTAFYLKIWFQED---FENFWTECPW---EEDMKYAKAVCDQVDVPLEVV 88 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke----~G~eV~gv~~~~~~~~~---~~~~~~~c~s---~~d~~~a~~va~~LGIpl~vv 88 (474)
+||++++++|.=||+++..+++ .|.++..-......-.+ ...++--... .-..+.+++.|+..|+|+.++
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I 81 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQI 81 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEe
Confidence 4799999999988888876655 37765443333211000 0000000001 124667888999999999999
Q ss_pred Ecc
Q 042717 89 HLT 91 (474)
Q Consensus 89 d~~ 91 (474)
|..
T Consensus 82 ~~~ 84 (104)
T PRK09590 82 PPQ 84 (104)
T ss_pred CHH
Confidence 863
No 134
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.51 E-value=46 Score=33.12 Aligned_cols=102 Identities=16% Similarity=0.080 Sum_probs=58.0
Q ss_pred EEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhh
Q 042717 22 AVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSY 101 (474)
Q Consensus 22 lValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~ 101 (474)
-+..|||+.. ++..+.+.|++.+-++...+..... .-.+..+.+..++.+++.++....+-....|.-.
T Consensus 6 h~s~~g~~~~--a~~~~~~~G~~~~qif~~~P~~w~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iN---- 74 (274)
T TIGR00587 6 HVSAAGGLQA--AYNRAAEIGATAFMFFLKSPRWWRR-----PMLEEEVIDWFKAALETNKNLSQIVLVHAPYLIN---- 74 (274)
T ss_pred EEeccCCHHH--HHHHHHHhCCCEEEEEecCccccCC-----CCCCHHHHHHHHHHHHHcCCCCcceeccCCeeee----
Confidence 4677999976 5667888999999888876432110 1124567888888888888763222221111100
Q ss_pred hHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEE
Q 042717 102 IIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVAS 141 (474)
Q Consensus 102 ~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IAT 141 (474)
--.|++-+.=...-.+...++.|..+|+++|.+
T Consensus 75 -------las~~~~~r~~sv~~~~~~i~~A~~lga~~vv~ 107 (274)
T TIGR00587 75 -------LASPDEEKEEKSLDVLDEELKRCELLGIMLYNF 107 (274)
T ss_pred -------cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 001222221111112455677899999997663
No 135
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=64.94 E-value=47 Score=35.31 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=40.6
Q ss_pred eeeeccCCCccceEEEEeeeecCCCCEEEEEecCCccCCCCCceEEE--EeCC--EEEEeeEEe
Q 042717 322 QCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAF--YQGT--RCIGSGVIL 381 (474)
Q Consensus 322 ~~kiR~~~~~~~c~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~--Y~g~--~~lGgG~I~ 381 (474)
.+.+.+...-.+|++... +++.+.|+|.+| -++.+||-.+| -++. +.+|-|.|.
T Consensus 354 ~~~l~~~t~~~~~~i~~i-----~~~~~~~~l~~p-~~~~~g~r~~~~~~~~~~~~~~~~~~~~ 411 (411)
T PRK04000 354 PLMLNVGTATTVGVVTSA-----RKDEAEVKLKRP-VCAEEGDRVAISRRVGGRWRLIGYGIIK 411 (411)
T ss_pred EEEEEEeccEEEEEEEEc-----CCcEEEEEECCc-EecCCCCEEEEEEecCCcEEEEEEEEeC
Confidence 344455555578888876 356889999999 57889999999 4666 788888873
No 136
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=63.80 E-value=47 Score=33.76 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCCeEEEEEccchhHHHHHHH-HHHcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 17 KGLKVAVLLSGGVDSSVALRL-LHSAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~L-Lke~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
..+||+|..||. .|-+-+.+ ..+.| .+|.+|.-++ . .+.+.|+++|||+++++...
T Consensus 92 ~~~kiavl~Sg~-g~nl~al~~~~~~~~l~~~i~~visn~----------------~---~~~~~A~~~gIp~~~~~~~~ 151 (289)
T PRK13010 92 QRPKVVIMVSKF-DHCLNDLLYRWRMGELDMDIVGIISNH----------------P---DLQPLAVQHDIPFHHLPVTP 151 (289)
T ss_pred CCeEEEEEEeCC-CccHHHHHHHHHCCCCCcEEEEEEECC----------------h---hHHHHHHHcCCCEEEeCCCc
Confidence 456899999998 44443333 33333 4666655432 1 24588999999999988652
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
. .. + ---..+.++.++.++|+++..-|.++
T Consensus 152 ~-~~-------~-----------------~~~~~~~~~l~~~~~Dlivlagym~i 181 (289)
T PRK13010 152 D-TK-------A-----------------QQEAQILDLIETSGAELVVLARYMQV 181 (289)
T ss_pred c-cc-------c-----------------chHHHHHHHHHHhCCCEEEEehhhhh
Confidence 1 00 0 00133566777889999999888764
No 137
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=63.42 E-value=56 Score=33.06 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=53.8
Q ss_pred CCCeEEEEEccchhHHHHHHHH-HHcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 17 KGLKVAVLLSGGVDSSVALRLL-HSAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LL-ke~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
..+||+|..||+ +|.+-+.+- .+.| .+|.+|.-++ ..+..+|+++|||+++++...
T Consensus 83 ~~~ki~vl~Sg~-g~nl~~l~~~~~~g~l~~~i~~visn~-------------------~~~~~~A~~~gIp~~~~~~~~ 142 (280)
T TIGR00655 83 KLKRVAILVSKE-DHCLGDLLWRWYSGELDAEIALVISNH-------------------EDLRSLVERFGIPFHYIPATK 142 (280)
T ss_pred CCcEEEEEEcCC-ChhHHHHHHHHHcCCCCcEEEEEEEcC-------------------hhHHHHHHHhCCCEEEcCCCC
Confidence 457899999998 555443333 3334 4666665543 123446999999999987532
Q ss_pred HHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 93 EYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 93 ~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
+. +.---..+.++.++.++|+|+..-|.++
T Consensus 143 -~~------------------------~~~~e~~~~~~l~~~~~Dlivlagym~i 172 (280)
T TIGR00655 143 -DN------------------------RVEHEKRQLELLKQYQVDLVVLAKYMQI 172 (280)
T ss_pred -cc------------------------hhhhHHHHHHHHHHhCCCEEEEeCchhh
Confidence 00 0000133566777789999998888764
No 138
>PLN03127 Elongation factor Tu; Provisional
Probab=63.18 E-value=27 Score=37.64 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=29.5
Q ss_pred CEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeee
Q 042717 347 NIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 383 (474)
Q Consensus 347 ~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~ 383 (474)
..++++|++|. .+.+|+-.+|=+++..+|+|+|.+.
T Consensus 410 a~v~l~~~~p~-~le~g~RfilR~~g~Tvg~G~V~~v 445 (447)
T PLN03127 410 VTAVFELISPV-PLEPGQRFALREGGRTVGAGVVSKV 445 (447)
T ss_pred EEEEEEECceE-EEeeCCEEEEEeCCcEEEEEEEEEe
Confidence 35677888885 6789999999887899999999765
No 139
>PRK09982 universal stress protein UspD; Provisional
Probab=61.61 E-value=80 Score=27.75 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=26.2
Q ss_pred CeEEEEEccchhHHHHHHHH----HHcCCcEEEEEEEc
Q 042717 19 LKVAVLLSGGVDSSVALRLL----HSAGHSCTAFYLKI 52 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LL----ke~G~eV~gv~~~~ 52 (474)
++|+|++.|.-.|.-++... ++.+-+++.+|+..
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~ 41 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDD 41 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEcc
Confidence 68999999999998766544 34478899888853
No 140
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=61.18 E-value=14 Score=30.37 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=25.0
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.++|++-+.+|..|..++..|++.||+
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCce
Confidence 4567888899999999999999999998
No 141
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=58.29 E-value=61 Score=35.24 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=59.2
Q ss_pred eecccccCCCCCceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeeccCCCccceEEEEe
Q 042717 260 TIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIE 339 (474)
Q Consensus 260 TiGQR~Gl~i~~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR~~~~~~~c~v~~~ 339 (474)
.-|||-+|.+.+ ..|...+.|++..... + ...+.+. ..+.|+...+..... .+.+.....-.+|++...
T Consensus 303 ~aG~~V~l~L~~------~~~i~rG~VL~~~~~~-~-~~~~~f~-a~i~~l~~~~i~~G~--~~~l~~gt~~~~a~i~~i 371 (474)
T PRK05124 303 FAGEAITLVLED------EIDISRGDLLVAADEA-L-QAVQHAS-ADVVWMAEQPLQPGQ--SYDIKIAGKKTRARVDAI 371 (474)
T ss_pred CCCCEEEEEeCC------ccccCCccEEECCCCC-C-ccceEEE-EEEEEeCCcccCCCC--eEEEEeCCCEEEEEEEEE
Confidence 335555555532 2355667777765432 1 1234553 456777532222212 222333333355655533
Q ss_pred ee---------------ecCCCCEEEEEecCCccCCCCCce------EEE--EeCCEEEEeeEEeeec
Q 042717 340 HV---------------EDGGENIAVVQLSEDDQGLAAGQF------AAF--YQGTRCIGSGVILESW 384 (474)
Q Consensus 340 ~~---------------~~~~~~~~~v~f~ep~~avapGQ~------av~--Y~g~~~lGgG~I~~~~ 384 (474)
.. ..++-..+++++++|. ++.+++- .++ +++...+|+|.|....
T Consensus 372 ~~~id~~t~~~~~~~~l~~g~~a~v~l~~~~pv-~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 372 RYQVDINTLTQREAENLPLNGIGLVELTFDEPL-VLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred eeeeccCCCcccCccccCCCCEEEEEEEECCee-ccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 10 0011124566778884 5667666 666 7788899999998654
No 142
>CHL00071 tufA elongation factor Tu
Probab=57.43 E-value=43 Score=35.53 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=54.4
Q ss_pred ecCCCeEEEecCCCCccceeeEEEEcceeeccCC----CcccccceeeeeccCCCccceEEEEeeee---------cCCC
Q 042717 280 DVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGL----PPEEISRLQCKVRHGPGFYNCNLMIEHVE---------DGGE 346 (474)
Q Consensus 280 d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~----~~~~~~~~~~kiR~~~~~~~c~v~~~~~~---------~~~~ 346 (474)
|...+.|+...+. +. ..+.|. ..+.|+... +..-.....+.+.+...-.+|++...... .++.
T Consensus 296 ~i~~G~vl~~~~~--~~-~~~~f~-a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~ 371 (409)
T CHL00071 296 DIERGMVLAKPGT--IT-PHTKFE-AQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDR 371 (409)
T ss_pred HcCCeEEEecCCC--CC-cceEEE-EEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEcccCCCCCcEecCCCE
Confidence 4566777766532 11 234443 345565431 10001122334444444467776644210 0111
Q ss_pred CEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeee
Q 042717 347 NIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 383 (474)
Q Consensus 347 ~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~ 383 (474)
..++++|++|. .+.+|+-.+|-++...+|+|.|...
T Consensus 372 a~v~l~~~~pi-~~e~~~rfilR~~~~tig~G~V~~~ 407 (409)
T CHL00071 372 IKMTVELIYPI-AIEKGMRFAIREGGRTVGAGVVSKI 407 (409)
T ss_pred EEEEEEECCeE-EEeeCCEEEEecCCeEEEEEEEEEe
Confidence 24677788884 5678888888888899999999754
No 143
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=56.87 E-value=63 Score=30.68 Aligned_cols=87 Identities=22% Similarity=0.287 Sum_probs=52.5
Q ss_pred CeEEEEEccchhHHHHHHHHHHcC-C--cEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAG-H--SCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G-~--eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
+||+|.+||+-....++.-....+ . +|.+|.-+.. + ..+...|+++|||+++++... +.
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~----------------~-~~~~~~A~~~gip~~~~~~~~-~~ 62 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKP----------------D-AYGLERAAQAGIPTFVLSLKD-FP 62 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCc----------------c-chHHHHHHHcCCCEEEECccc-cC
Confidence 589999999877766554444443 3 4544433311 1 245688999999998865431 10
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHH-HHHHHHHHHcCCCEEEEceeccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKF-GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf-~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
. + -.+ ..+.++.++.++|++++-.|..+
T Consensus 63 ~-----------------------~-~~~~~~~~~~l~~~~~D~iv~~~~~~i 91 (190)
T TIGR00639 63 S-----------------------R-EAFDQAIIEELRAHEVDLVVLAGFMRI 91 (190)
T ss_pred c-----------------------h-hhhhHHHHHHHHhcCCCEEEEeCcchh
Confidence 0 0 011 23456677788999888777653
No 144
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=56.80 E-value=59 Score=26.73 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=25.3
Q ss_pred CEEEEEecCCccCCC------CCceEEEEeCCEEEEeeEE
Q 042717 347 NIAVVQLSEDDQGLA------AGQFAAFYQGTRCIGSGVI 380 (474)
Q Consensus 347 ~~~~v~f~ep~~ava------pGQ~av~Y~g~~~lGgG~I 380 (474)
..+.+.|++|. .+. +|+..+|=+++..+|+|+|
T Consensus 64 a~v~l~~~~pi-~~e~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 64 GIVEVELQKPV-ALETFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EEEEEEECCce-EEEEhhhCCCcccEEEEeCCCEEEEEEC
Confidence 35566778886 555 8888888888888899976
No 145
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=56.56 E-value=32 Score=31.82 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=44.9
Q ss_pred CCCCeEEEEEcc---chhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEE
Q 042717 16 QKGLKVAVLLSG---GVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVH 89 (474)
Q Consensus 16 ~~~~kVlValSG---GvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd 89 (474)
....+|+|.... |-|-.++|..|.+.|++|..+.+.... ...++.....++++++|++....+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~ 88 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPE-----------KLSEDAKQQLEILKKMGIKIIELD 88 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSS-----------STSHHHHHHHHHHHHTT-EEESSC
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccc-----------cCCHHHHHHHHHHHhcCCcEeecc
Confidence 345677777654 579999999999999999886665321 134778888999999998776543
No 146
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=56.40 E-value=20 Score=34.39 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCCeEEEEEccchhHHHH-H---HHHHHcCCcEEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVA-L---RLLHSAGHSCTAFY 49 (474)
Q Consensus 17 ~~~kVlValSGGvDSsva-a---~LLke~G~eV~gv~ 49 (474)
+++||++|+|||+=+.-+ . ..|++.|++|..+.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~ 40 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIV 40 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEE
Confidence 578999999999877763 4 44555699987554
No 147
>PRK12736 elongation factor Tu; Reviewed
Probab=54.80 E-value=47 Score=35.05 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=29.1
Q ss_pred CEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeeec
Q 042717 347 NIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESW 384 (474)
Q Consensus 347 ~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~~ 384 (474)
..++++|++|. .+.+|+-.+|=++...+|+|.|....
T Consensus 357 a~v~l~~~~p~-~~~~~~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 357 VTITVELIHPI-AMEQGLKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred EEEEEEECceE-EEeeCCEEEEecCCcEEEEEEEEEee
Confidence 34677788885 66789988887788999999997653
No 148
>PRK12735 elongation factor Tu; Reviewed
Probab=54.60 E-value=38 Score=35.73 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=28.6
Q ss_pred CEEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeee
Q 042717 347 NIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 383 (474)
Q Consensus 347 ~~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~ 383 (474)
..++++|++|. .+.+|+-.+|=++...+|+|.|...
T Consensus 359 a~v~l~~~~p~-~~~~~~rfilR~~g~tv~~G~V~~v 394 (396)
T PRK12735 359 VKMTVELIAPI-AMEEGLRFAIREGGRTVGAGVVAKI 394 (396)
T ss_pred EEEEEEECceE-EEeECCEEEEEcCCcEEEEEEEEEe
Confidence 35677888885 6778998888887889999998754
No 149
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=51.54 E-value=1.7e+02 Score=26.14 Aligned_cols=108 Identities=13% Similarity=0.003 Sum_probs=54.0
Q ss_pred CCeEEEEEccchhH----HHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchH
Q 042717 18 GLKVAVLLSGGVDS----SVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDE 93 (474)
Q Consensus 18 ~~kVlValSGGvDS----svaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~ 93 (474)
+.+|+++.-||=.- .+.+.+|...||+|+- ++.+ ...+...+.|.+.+..+..+.....
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~----LG~~-------------vp~e~i~~~a~~~~~d~V~lS~~~~ 65 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVIN----LGVM-------------TSQEEFIDAAIETDADAILVSSLYG 65 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEE----CCCC-------------CCHHHHHHHHHHcCCCEEEEcCccc
Confidence 45677766554322 3455677788999853 2211 1245566778888888877765421
Q ss_pred HHHhhHhhhHHHHhcCCCCCcccccchHH-----HHHHHHHHHHHcCCCEEEEc
Q 042717 94 YWKNVVSYIIEEYRCGRTPNPDVLCNTRI-----KFGAFMDAISSMEFDYVASG 142 (474)
Q Consensus 94 f~~~V~~~~i~~y~~G~tpNPci~Cnr~i-----Kf~~l~~~A~~~Gad~IATG 142 (474)
-....+..+++.......+++.+.+.-.+ ......+.++++|++.|+++
T Consensus 66 ~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~ 119 (137)
T PRK02261 66 HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPP 119 (137)
T ss_pred cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECc
Confidence 11112222233332222223332222211 02333455667777777664
No 150
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=49.51 E-value=1.2e+02 Score=29.28 Aligned_cols=87 Identities=20% Similarity=0.150 Sum_probs=51.9
Q ss_pred eEEEEEccchhHHHHHHHHHHcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 20 KVAVLLSGGVDSSVALRLLHSAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
||+|..||+==..-++.-..+.| .+|.++..+.. -..+.+.|+++|||+++++..+ +.
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~-----------------~~~~~~~A~~~gIp~~~~~~~~-~~- 61 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKP-----------------GCGGAEYARENGIPVLVYPKTK-GE- 61 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCC-----------------CChHHHHHHHhCCCEEEecccc-CC-
Confidence 58999999764444443333443 46655554431 1235778999999998765431 00
Q ss_pred hhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 97 NVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 97 ~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
.+ ...-..+.+..++.++|++++..|..+
T Consensus 62 ------------~~----------~~~~~~~~~~l~~~~~Dliv~agy~~i 90 (207)
T PLN02331 62 ------------PD----------GLSPDELVDALRGAGVDFVLLAGYLKL 90 (207)
T ss_pred ------------Cc----------ccchHHHHHHHHhcCCCEEEEeCcchh
Confidence 00 011123455667789999999888764
No 151
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=49.46 E-value=22 Score=29.33 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=27.3
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~ 46 (474)
+.++++|-++.|.-|..++..|+++||..+
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~ 89 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNV 89 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccc
Confidence 467899999999999999999999998876
No 152
>PRK00049 elongation factor Tu; Reviewed
Probab=48.95 E-value=62 Score=34.22 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.9
Q ss_pred EEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeee
Q 042717 348 IAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 383 (474)
Q Consensus 348 ~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~ 383 (474)
.++++|++|. .+.||+-.+|=+++..+|+|.|.+.
T Consensus 360 ~v~i~~~~p~-~~e~~~RfilR~~g~t~~~G~V~~v 394 (396)
T PRK00049 360 EMTVELIAPI-AMEEGLRFAIREGGRTVGAGVVTKI 394 (396)
T ss_pred EEEEEECceE-EEeeCCEEEEecCCcEEEEEEEEEe
Confidence 4667777885 6779998888777889999999754
No 153
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=48.37 E-value=1.4e+02 Score=28.91 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=57.5
Q ss_pred CeEEEEEccchhHHHHHHHHHHcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYW 95 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~ 95 (474)
+||+|..||+==-+-++.-..+.| .+|.+|..+.. -.++.+.|++.|||..+++..+ |.
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~-----------------~A~~lerA~~~gIpt~~~~~k~-~~ 62 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKA-----------------DAYALERAAKAGIPTVVLDRKE-FP 62 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCC-----------------CCHHHHHHHHcCCCEEEecccc-CC
Confidence 479999999764444444444433 46777766532 2357788999999999888642 21
Q ss_pred HhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceeccc
Q 042717 96 KNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 96 ~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
. +.---..+.+..++.+.|.|+..=|.++
T Consensus 63 ~-----------------------r~~~d~~l~~~l~~~~~dlvvLAGyMrI 91 (200)
T COG0299 63 S-----------------------REAFDRALVEALDEYGPDLVVLAGYMRI 91 (200)
T ss_pred C-----------------------HHHHHHHHHHHHHhcCCCEEEEcchHHH
Confidence 1 1111244667778889999998877765
No 154
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=47.59 E-value=31 Score=28.42 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=25.2
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
.+.++|+|-..+|.-|..++.+|++.||+
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFK 87 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCc
Confidence 35567999999999999999999999995
No 155
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=46.90 E-value=92 Score=24.98 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=25.5
Q ss_pred CCEEEEEe-cCCccCCCCCceEEEEeCCEEEEeeEEee
Q 042717 346 ENIAVVQL-SEDDQGLAAGQFAAFYQGTRCIGSGVILE 382 (474)
Q Consensus 346 ~~~~~v~f-~ep~~avapGQ~av~Y~g~~~lGgG~I~~ 382 (474)
...++++| ..|. .+-+|+..+| +.+..+|.|+|.+
T Consensus 51 ~~~v~i~f~~~p~-~~e~~grf~l-r~g~tva~G~I~~ 86 (87)
T cd03708 51 RALVRFRFLYHPE-YLREGQRLIF-REGRTKGVGEVTK 86 (87)
T ss_pred eEEEEEEECCCCc-EEccCCeEEE-ECCCcEEEEEEEE
Confidence 34566775 5675 5678988888 5448999999964
No 156
>PRK06849 hypothetical protein; Provisional
Probab=45.87 E-value=3.5e+02 Score=28.09 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=24.0
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYL 50 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~ 50 (474)
..++|+|.=.+.--+.-++..|++.|++|+++..
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~ 36 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADS 36 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 3567777644444466788888999999988744
No 157
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=44.93 E-value=24 Score=30.95 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=21.6
Q ss_pred CeEEEEEccchhHHHHHHHH---HHcCCcEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLL---HSAGHSCTAFY 49 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LL---ke~G~eV~gv~ 49 (474)
|||++++||+....-+..++ ++.|++|..+.
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 68999999999887655555 45589976543
No 158
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=44.40 E-value=3.3e+02 Score=27.01 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=19.6
Q ss_pred cCCCHHHHHHHHHHcCCCCcCCCCCcc
Q 042717 191 GCISKEEVRKFATQFDLPNKDRKDSQG 217 (474)
Q Consensus 191 ~~ltK~EVr~lA~~~GLp~~~k~~S~d 217 (474)
+-++++.=+++.+++++.+..-|+|-+
T Consensus 175 gPfs~e~n~aL~~~~~i~~lVtK~SG~ 201 (248)
T PRK08057 175 GPFSLELERALLRQHRIDVVVTKNSGG 201 (248)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 346677778888888888766667743
No 159
>PRK10116 universal stress protein UspC; Provisional
Probab=44.22 E-value=1e+02 Score=26.65 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=24.2
Q ss_pred CCeEEEEEccchhHHHHHHH----HHHcCCcEEEEEEE
Q 042717 18 GLKVAVLLSGGVDSSVALRL----LHSAGHSCTAFYLK 51 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~L----Lke~G~eV~gv~~~ 51 (474)
-++|+|++.+.-+|..++.. .++.+-+++.++.-
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~ 40 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLA 40 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEc
Confidence 36899999888887665443 34457788888774
No 160
>PRK05920 aromatic acid decarboxylase; Validated
Probab=43.84 E-value=38 Score=32.69 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=24.6
Q ss_pred CCCeEEEEEccchhHHHHHHHH---HHcCCcEEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLL---HSAGHSCTAFY 49 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LL---ke~G~eV~gv~ 49 (474)
+++||++++|||+=+.-+..++ ++.|++|..+.
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAADYEVHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4578999999998876665555 44599987654
No 161
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=43.84 E-value=52 Score=25.94 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=25.1
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
...++|++-..+|..|..++..|++.|++
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 34567888889999999999999999987
No 162
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=43.69 E-value=40 Score=27.45 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=24.5
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
++++|++-..+|..|+.++..|++.|++
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWE 82 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCE
Confidence 3567888888899999999999999998
No 163
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=43.50 E-value=45 Score=27.19 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=24.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.++|+|-..+|..|..++..|++.|++
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~ 82 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGK 82 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCC
Confidence 4567888889999999999999999985
No 164
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=43.32 E-value=60 Score=27.16 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=41.5
Q ss_pred eEEEEEccchhHHHHHHHHHH----cCCcEEEEEEEcCCCCC-cccccCCCCC---HHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 20 KVAVLLSGGVDSSVALRLLHS----AGHSCTAFYLKIWFQED-FENFWTECPW---EEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke----~G~eV~gv~~~~~~~~~-~~~~~~~c~s---~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
||++++.+|+=|++++.-+++ .|.++..-+.....-.. ...++--+.+ ....+.+++.+...++|+..++..
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChH
Confidence 589999999999988876655 36654433333211000 0000000011 234566777777889999988864
No 165
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=42.69 E-value=34 Score=27.54 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=25.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.++|++...+|..|..++..|++.||+
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFT 82 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCc
Confidence 4568999999999999999999999985
No 166
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=42.60 E-value=1.1e+02 Score=34.39 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=58.2
Q ss_pred ecccccCCCCCceEEEEEEecCCCeEEEecCCCCccceeeEEEEcceeeccCCCcccccceeeeeccCCCccceEEEEee
Q 042717 261 IGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEH 340 (474)
Q Consensus 261 iGQR~Gl~i~~~p~yVv~~d~~~N~v~v~~~~~~~~l~~~~~~~~~~~wi~~~~~~~~~~~~~kiR~~~~~~~c~v~~~~ 340 (474)
-||+-|+.+.+ ..|...+.|++..+.. ....+.+. ..+.|+...+.... ..+.+-....-.+|++....
T Consensus 300 aG~~v~i~l~~------~~~i~rG~vL~~~~~~--~~~~~~f~-a~i~~l~~~~~~~g--~~~~l~~gt~~~~a~i~~i~ 368 (632)
T PRK05506 300 AGQAVTLTLAD------EIDISRGDMLARADNR--PEVADQFD-ATVVWMAEEPLLPG--RPYLLKHGTRTVPASVAAIK 368 (632)
T ss_pred CCCeEEEEecC------ccccCCccEEecCCCC--CcceeEEE-EEEEEecccccCCC--CeEEEEeCCCEEEEEEEEEE
Confidence 45655555432 2455677777766431 11234443 44567653322211 22222222333455554321
Q ss_pred e---------------ecCCCCEEEEEecCCccCCCCCce------EEE--EeCCEEEEeeEEeeecc
Q 042717 341 V---------------EDGGENIAVVQLSEDDQGLAAGQF------AAF--YQGTRCIGSGVILESWD 385 (474)
Q Consensus 341 ~---------------~~~~~~~~~v~f~ep~~avapGQ~------av~--Y~g~~~lGgG~I~~~~~ 385 (474)
. ..++-..+.+++++|. ++.+++- .++ ++++..+|+|.|....+
T Consensus 369 ~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi-~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~ 435 (632)
T PRK05506 369 YRVDVNTLERLAAKTLELNEIGRCNLSTDAPI-AFDPYARNRTTGSFILIDRLTNATVGAGMIDFALR 435 (632)
T ss_pred EEecCCCCccCCcceeCCCCEEEEEEEECCEE-eeeeccccccCceEEEEeccCCceEEEEEECcccc
Confidence 0 0011224566778874 5667665 667 67888999999987655
No 167
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=42.47 E-value=2.3e+02 Score=24.54 Aligned_cols=34 Identities=6% Similarity=0.010 Sum_probs=25.0
Q ss_pred CCeEEEEEccchhHHHHHHHH----HHcCCcEEEEEEE
Q 042717 18 GLKVAVLLSGGVDSSVALRLL----HSAGHSCTAFYLK 51 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LL----ke~G~eV~gv~~~ 51 (474)
-++|+|++-|.-.|..++... +..|-+++.+|+.
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~ 40 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVD 40 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEc
Confidence 368999999988887765443 3447788888884
No 168
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=41.89 E-value=1.1e+02 Score=32.98 Aligned_cols=42 Identities=14% Similarity=0.018 Sum_probs=29.4
Q ss_pred EEEEEecCCccCCC------CCceEEEEeCCEEEEeeEEeeecccCCCC
Q 042717 348 IAVVQLSEDDQGLA------AGQFAAFYQGTRCIGSGVILESWDDQGFP 390 (474)
Q Consensus 348 ~~~v~f~ep~~ava------pGQ~av~Y~g~~~lGgG~I~~~~~~~~~~ 390 (474)
.+++++.+|. ++. .++-.+|=+++..+|+|.|.....+.+.-
T Consensus 389 ~v~l~~~~pi-~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~~~~ 436 (446)
T PTZ00141 389 IVKMVPTKPM-CVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKEGSG 436 (446)
T ss_pred EEEEEECCce-EEeecccCCCCccEEEEECCCEEEEEEEEEEecCCCcc
Confidence 4456666774 344 46677887888899999999887655443
No 169
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=41.17 E-value=52 Score=26.48 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.7
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCcE
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHSC 45 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~eV 45 (474)
.++|++-.+.|..|..++..|++.|++|
T Consensus 51 ~~~vvl~c~~g~~a~~~a~~L~~~G~~v 78 (90)
T cd01524 51 DKEIIVYCAVGLRGYIAARILTQNGFKV 78 (90)
T ss_pred CCcEEEEcCCChhHHHHHHHHHHCCCCE
Confidence 4578888888999999999999999954
No 170
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=40.63 E-value=60 Score=27.43 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=25.5
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~ 46 (474)
+..+|++-+.+|..|..++..|++.||+.+
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v 86 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHA 86 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeE
Confidence 456788888899999999999999999753
No 171
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=40.42 E-value=51 Score=28.72 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=24.7
Q ss_pred CCCCeEEEEE-ccchhHHHHHHHHHHcCCcE
Q 042717 16 QKGLKVAVLL-SGGVDSSVALRLLHSAGHSC 45 (474)
Q Consensus 16 ~~~~kVlVal-SGGvDSsvaa~LLke~G~eV 45 (474)
.+.++|+|-. +||.=|..++++|+..||+|
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v 114 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDV 114 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCce
Confidence 3456788888 58999999999999999974
No 172
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=39.86 E-value=3.8e+02 Score=26.60 Aligned_cols=150 Identities=17% Similarity=0.250 Sum_probs=81.3
Q ss_pred EEccch-hHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhh
Q 042717 24 LLSGGV-DSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYI 102 (474)
Q Consensus 24 alSGGv-DSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~ 102 (474)
-..||. |-.-++.++++.+.+.+ +|-. ++| ..+-.+.|.++|+++|||+..+.-.. |.
T Consensus 47 v~~G~lg~~~~l~~~l~~~~i~~v---IDAT-----HPf-----A~~is~na~~a~~~~~ipylR~eRp~--~~------ 105 (249)
T PF02571_consen 47 VRVGRLGDEEGLAEFLRENGIDAV---IDAT-----HPF-----AAEISQNAIEACRELGIPYLRFERPS--WQ------ 105 (249)
T ss_pred EEECCCCCHHHHHHHHHhCCCcEE---EECC-----Cch-----HHHHHHHHHHHHhhcCcceEEEEcCC--cc------
Confidence 357777 77777888999887753 3321 111 23556789999999999998876542 10
Q ss_pred HHHHhcCCCCCcccccchHHHHHHHHHHHHHcCC--CEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccCh
Q 042717 103 IEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEF--DYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQ 180 (474)
Q Consensus 103 i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Ga--d~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~ 180 (474)
.+. ..+...... +..+.+++.+.+. =+++||-.- . .. +.. . ....+.+|.+-|+.
T Consensus 106 -----~~~-~~~~~~v~~---~~eA~~~l~~~~~~~iflttGsk~-L---------~~-f~~-~--~~~~~r~~~RvLp~ 162 (249)
T PF02571_consen 106 -----PEP-DDNWHYVDS---YEEAAELLKELGGGRIFLTTGSKN-L---------PP-FVP-A--PLPGERLFARVLPT 162 (249)
T ss_pred -----cCC-CCeEEEeCC---HHHHHHHHhhcCCCCEEEeCchhh-H---------HH-Hhh-c--ccCCCEEEEEECCC
Confidence 010 112333333 4556666655552 345666431 0 11 110 0 11223334433332
Q ss_pred hh------hccccccccCCCHHHHHHHHHHcCCCCcCCCCCcc
Q 042717 181 AQ------LKRLIFPLGCISKEEVRKFATQFDLPNKDRKDSQG 217 (474)
Q Consensus 181 ~~------L~~~i~PL~~ltK~EVr~lA~~~GLp~~~k~~S~d 217 (474)
.. ..+++.=-+-++++.=+++.+++++.+..-|+|-+
T Consensus 163 ~~~~~g~~~~~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG~ 205 (249)
T PF02571_consen 163 PESALGFPPKNIIAMQGPFSKELNRALFRQYGIDVLVTKESGG 205 (249)
T ss_pred ccccCCCChhhEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 11 01233334456788888888888888766667743
No 173
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=39.37 E-value=55 Score=27.40 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=23.9
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.++|+|-+.+|.-|..++..|++.||+
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~ 92 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLP 92 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCC
Confidence 4567888888999999999999999995
No 174
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=38.92 E-value=72 Score=35.66 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=41.4
Q ss_pred eeeccCCCccceEEEEeeeecCCCCEEEEEecCCccCCCCCceEEEEeC-CEEEEeeEEeee
Q 042717 323 CKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQG-TRCIGSGVILES 383 (474)
Q Consensus 323 ~kiR~~~~~~~c~v~~~~~~~~~~~~~~v~f~ep~~avapGQ~av~Y~g-~~~lGgG~I~~~ 383 (474)
+.+.+......|++... +.+.+.+.|++| ..+.+||.+++=++ ...+|||.|...
T Consensus 283 ~~~~~gt~~~~~~i~~l-----~~~~~~l~l~~P-~~~~~gd~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 283 YHIAHGMSVTTGKISLL-----DKGIALLTLDAP-LILAKGDKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred EEEEEeceEEEEEEEEc-----cCcEEEEEECCc-eecCCCCEEEEEeCCCEEEeeeEEecC
Confidence 34444555577888765 456889999999 47889999999873 489999998855
No 175
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=37.79 E-value=1.7e+02 Score=30.99 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=25.6
Q ss_pred EEEEEecCCccCCCC------CceEEEEeCCEEEEeeEEeeec
Q 042717 348 IAVVQLSEDDQGLAA------GQFAAFYQGTRCIGSGVILESW 384 (474)
Q Consensus 348 ~~~v~f~ep~~avap------GQ~av~Y~g~~~lGgG~I~~~~ 384 (474)
.+++++.+|. ++.+ ++-.+|=+++..+|+|.|....
T Consensus 382 ~v~l~~~~pi-~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~ 423 (426)
T TIGR00483 382 IVKFKPTKPM-VIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVD 423 (426)
T ss_pred EEEEEECCee-EEeecccCCCCccEEEEECCCEEEEEEEEEee
Confidence 4456666774 4443 7778887877899999997654
No 176
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=36.82 E-value=1.2e+02 Score=25.96 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=50.9
Q ss_pred CeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCC--CCHHhHHHHHHHHHHcCCCEEEEEcchHHHH
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTEC--PWEEDMKYAKAVCDQVDVPLEVVHLTDEYWK 96 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c--~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~ 96 (474)
|||+|.=|||-.-+.+..|.+.. .|.-+++-.+. .+.... ..| -+..+.+.+.++|++.+|.+.++--+.....
T Consensus 1 MkVLviGsGgREHAia~~l~~s~--~v~~v~~aPGN-~G~~~~-~~~~~~~~~d~~~l~~~a~~~~idlvvvGPE~pL~~ 76 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSP--SVEEVYVAPGN-PGTAEL-GKNVPIDITDPEELADFAKENKIDLVVVGPEAPLVA 76 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCT--TEEEEEEEE---TTGGGT-SEEE-S-TT-HHHHHHHHHHTTESEEEESSHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHhcCC--CCCEEEEeCCC-HHHHhh-ceecCCCCCCHHHHHHHHHHcCCCEEEECChHHHHH
Confidence 58999999999998887776554 45455554332 111110 111 1356788999999999999999977665555
Q ss_pred hhHhhh
Q 042717 97 NVVSYI 102 (474)
Q Consensus 97 ~V~~~~ 102 (474)
.+.|.+
T Consensus 77 Gl~D~l 82 (100)
T PF02844_consen 77 GLADAL 82 (100)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 555543
No 177
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=36.59 E-value=1.3e+02 Score=32.40 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=39.8
Q ss_pred EEEEccchhHHH---HHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEE
Q 042717 22 AVLLSGGVDSSV---ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVV 88 (474)
Q Consensus 22 lValSGGvDSsv---aa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vv 88 (474)
+|++=|.==++. +|++|+++|+.|.-|..+++- +..++..+.++++.|+|++-.
T Consensus 105 mvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R-------------pAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 105 MVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR-------------PAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred EEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC-------------hHHHHHHHHHHHHcCCceecC
Confidence 355555433443 456677789999999888752 467899999999999998766
No 178
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=36.40 E-value=2.6e+02 Score=28.33 Aligned_cols=51 Identities=6% Similarity=0.042 Sum_probs=27.6
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 34 ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 34 aa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
...++++.|-+.. ||+....+-.. -.-....+..++.|+.|||+++.+...
T Consensus 122 i~~~Ak~mGAktF-Vh~sfprhms~------~~l~~Rr~~M~~~C~~lGi~fv~~taP 172 (275)
T PF12683_consen 122 IVWAAKKMGAKTF-VHYSFPRHMSY------ELLARRRDIMEEACKDLGIKFVEVTAP 172 (275)
T ss_dssp HHHHHHHTT-S-E-EEEEETTGGGS------HHHHHHHHHHHHHHHHCT--EEEEEE-
T ss_pred HHHHHHHcCCceE-EEEechhhcch------HHHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4556677898753 45443211000 001345677889999999999988554
No 179
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=35.80 E-value=3.7e+02 Score=26.19 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=56.0
Q ss_pred EEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhh
Q 042717 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYI 102 (474)
Q Consensus 23 ValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~ 102 (474)
+-.|||.. -++..+.+.|++.+-+++....... ..-.+..+.+..++.+++.||++.+.- . |.-..
T Consensus 6 ~~~~~~~~--~~~~~~~~~G~~~vel~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~gl~ls~h~-p--~~~nl---- 71 (273)
T smart00518 6 VSAAGGLY--KAFIEAVDIGARSFQLFLGNPRSWK-----GVRLSEETAEKFKEALKENNIDVSVHA-P--YLINL---- 71 (273)
T ss_pred EcccCcHh--HHHHHHHHcCCCEEEEECCCCCCCC-----CCCCCHHHHHHHHHHHHHcCCCEEEEC-C--ceecC----
Confidence 34567764 3456677789998888776432110 011245678899999999999865431 1 10000
Q ss_pred HHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEE
Q 042717 103 IEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVAS 141 (474)
Q Consensus 103 i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IAT 141 (474)
..|+|-..-...-.+...+++|..+|++.|.+
T Consensus 72 -------~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~ 103 (273)
T smart00518 72 -------ASPDKEKVEKSIERLIDEIKRCEELGIKALVF 103 (273)
T ss_pred -------CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 01222222121112455677899999998775
No 180
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=35.50 E-value=2.3e+02 Score=29.63 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=61.0
Q ss_pred chhHHHHH-HHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEE-EEcchHHHHhhHhhhHHH
Q 042717 28 GVDSSVAL-RLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEV-VHLTDEYWKNVVSYIIEE 105 (474)
Q Consensus 28 GvDSsvaa-~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~v-vd~~~~f~~~V~~~~i~~ 105 (474)
=+|+++.- .-|.+.|.+++=+++. ..++.+...++++++.+|+.- +.+...+.-.+.+.-++.
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv~---------------~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k 98 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTVP---------------DMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDK 98 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecC---------------CHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcce
Confidence 46777653 5567779999888764 357788999999999999853 333322222222211222
Q ss_pred HhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecc
Q 042717 106 YRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 106 y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~ 146 (474)
| .-||--.-+. -||+.+.+.|++.|.. |=.|-+..
T Consensus 99 ~----RINPGNig~~-~~v~~vVe~Ak~~g~p-iRIGVN~G 133 (361)
T COG0821 99 V----RINPGNIGFK-DRVREVVEAAKDKGIP-IRIGVNAG 133 (361)
T ss_pred E----EECCcccCcH-HHHHHHHHHHHHcCCC-EEEecccC
Confidence 2 2355544444 3788999999998875 33466654
No 181
>PLN02828 formyltetrahydrofolate deformylase
Probab=35.44 E-value=96 Score=31.26 Aligned_cols=60 Identities=17% Similarity=0.039 Sum_probs=38.0
Q ss_pred CCCeEEEEEccchhHHHHHHHH-HHcC---CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLL-HSAG---HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LL-ke~G---~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
..+||+|..||.- |.+.+.+- .+.| .+|.+|.-++... .-..+++.|+++|||+++++..
T Consensus 69 ~~~riavlvSg~g-~nl~~ll~~~~~g~l~~eI~~ViSn~~~~--------------~~a~~~~~A~~~gIP~~~~~~~ 132 (268)
T PLN02828 69 PKYKIAVLASKQD-HCLIDLLHRWQDGRLPVDITCVISNHERG--------------PNTHVMRFLERHGIPYHYLPTT 132 (268)
T ss_pred CCcEEEEEEcCCC-hhHHHHHHhhhcCCCCceEEEEEeCCCCC--------------CCchHHHHHHHcCCCEEEeCCC
Confidence 4578999999864 44433332 2333 5777776553210 0125778899999999988764
No 182
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=35.20 E-value=1.4e+02 Score=30.58 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=43.3
Q ss_pred CeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC---CCEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD---VPLEV 87 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG---Ipl~v 87 (474)
+||++=.-+|+|-++|+.++... .++|.|++..++. |..+...+.+.++.+.+| ||.+.
T Consensus 3 ~~vIiDtD~g~DDa~AL~~al~~~~~~l~gIt~v~Gn----------~~~~~~~~na~~~l~~~g~~diPV~~ 65 (311)
T PRK10443 3 LPIILDCDPGHDDAIALVLALASPELDVKAVTTSAGN----------QTPEKTLRNALRMLTLLNRTDIPVAG 65 (311)
T ss_pred CcEEEECCCChHHHHHHHHHhcCCCceEEEEEEeCCC----------CCHHHHHHHHHHHHHHhCCCCCcEEe
Confidence 47888888899999988776654 6899999998753 223556778888888876 45543
No 183
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=35.06 E-value=1.5e+02 Score=25.10 Aligned_cols=42 Identities=14% Similarity=0.018 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcc
Q 042717 33 VALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLT 91 (474)
Q Consensus 33 vaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~ 91 (474)
+++.+|+..||+|+ ++ +.. -..+...+.+.+.+..+..+...
T Consensus 18 ~~~~~l~~~G~~V~--~l--g~~-------------~~~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 18 IVARALRDAGFEVI--DL--GVD-------------VPPEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHHHHHCCCEEE--EC--CCC-------------CCHHHHHHHHHHcCCCEEEEecc
Confidence 45566777899982 22 211 11345556678888888877765
No 184
>PRK11175 universal stress protein UspE; Provisional
Probab=34.56 E-value=4e+02 Score=26.20 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCEEEEceecc
Q 042717 125 GAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 125 ~~l~~~A~~~Gad~IATGH~a~ 146 (474)
..+.+++++.++|.|+.|++.+
T Consensus 251 ~~I~~~a~~~~~DLIVmG~~~~ 272 (305)
T PRK11175 251 EVIPDLAEHLDAELVILGTVGR 272 (305)
T ss_pred HHHHHHHHHhCCCEEEECCCcc
Confidence 4467889999999999999864
No 185
>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []. Inactivation of this complex leads to a loss of thiolation on tRNAs, decreased viability and aberrant cell development. This entry represents the second subunit of this complex.
Probab=34.54 E-value=25 Score=30.09 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.9
Q ss_pred ccccccccCCCHHHHHHHHHHcCCCC
Q 042717 184 KRLIFPLGCISKEEVRKFATQFDLPN 209 (474)
Q Consensus 184 ~~~i~PL~~ltK~EVr~lA~~~GLp~ 209 (474)
..+++||.++.++||..|++-.+++.
T Consensus 32 i~~~rPLRd~l~kEi~~Y~~~~~l~~ 57 (107)
T PF10288_consen 32 IKIIRPLRDLLKKEIAFYNRLCGLES 57 (107)
T ss_pred ceEEeehHhCCHHHHHHHHHHhCcch
Confidence 37999999999999999999999974
No 186
>PLN02717 uridine nucleosidase
Probab=34.36 E-value=1.3e+02 Score=30.73 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=42.6
Q ss_pred CeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC---CCEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD---VPLEV 87 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG---Ipl~v 87 (474)
+||++=.-+|+|-++|+.++... ..+|.|++...+. |..+.....+.++.+.+| ||.+.
T Consensus 1 ~~vIiDtD~GiDDa~Al~~al~~~~~~l~gIt~v~GN----------~~~~~~~~na~~ll~~~g~~diPV~~ 63 (316)
T PLN02717 1 KKLIIDTDPGIDDAMAILMALRSPEVEVIGLTTIFGN----------VTTKLATRNALHLLEMAGRPDVPVAE 63 (316)
T ss_pred CcEEEECCCChHHHHHHHHHhcCCCceEEEEEEccCC----------cCHHHHHHHHHHHHHHcCCCCCCEEe
Confidence 35777777899998888776654 6899999987653 233566778888888886 56543
No 187
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=34.30 E-value=87 Score=25.13 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.0
Q ss_pred eEEEEEccchhHHHHH-HHHH----HcCCcEEEEEEE
Q 042717 20 KVAVLLSGGVDSSVAL-RLLH----SAGHSCTAFYLK 51 (474)
Q Consensus 20 kVlValSGGvDSsvaa-~LLk----e~G~eV~gv~~~ 51 (474)
||++++++|+=||.++ ..++ ++|+++...+..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 6899999999999988 4443 458887777665
No 188
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=34.10 E-value=60 Score=30.63 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=23.5
Q ss_pred CeEEEEEccchhHHHHHHHH---HHcCCcEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLL---HSAGHSCTAFY 49 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LL---ke~G~eV~gv~ 49 (474)
+||++++||++-+.-+..++ ++.|++|..+.
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~ 35 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTKRGYQVTVLM 35 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 68999999999887766555 44588877543
No 189
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=33.78 E-value=58 Score=30.59 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=23.2
Q ss_pred CeEEEEEccchhHHHHHHHH---HHcCCcEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLL---HSAGHSCTAFY 49 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LL---ke~G~eV~gv~ 49 (474)
+||+|++||+.-+.-+..++ ++.|++|..+.
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTKLGYDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 47999999998776666555 44589987654
No 190
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=33.76 E-value=56 Score=27.40 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=29.4
Q ss_pred EEEEEecCCccCCCCCceEEEEeCCEEEEeeEEeee
Q 042717 348 IAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 383 (474)
Q Consensus 348 ~~~v~f~ep~~avapGQ~av~Y~g~~~lGgG~I~~~ 383 (474)
.+.++|+.| -.+.+|+-.+|=+++..+|.|+|.+.
T Consensus 64 ~v~l~~~~p-i~ve~~~Rf~lR~~~~Tia~G~V~~v 98 (99)
T PF03143_consen 64 VVELEFQKP-ICVEPFSRFILRDGGKTIAVGVVTKV 98 (99)
T ss_dssp EEEEEEEEE-EEETTTTEEEEEETTEEEEEEEEEEE
T ss_pred ccceeeccc-eeeecCceEEEccCCeEEEEEEEEEe
Confidence 456777887 67889999999999999999999864
No 191
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=33.45 E-value=3.1e+02 Score=24.52 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=41.0
Q ss_pred Ce-EEEEEccchhHHHHHHHHHHc--CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEE
Q 042717 19 LK-VAVLLSGGVDSSVALRLLHSA--GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVH 89 (474)
Q Consensus 19 ~k-VlValSGGvDSsvaa~LLke~--G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd 89 (474)
-| |=|..||-+|-..+|..|++= |.=|.|.++. ..+-.. +.-.+....+.++++.+.+||+-..++
T Consensus 30 vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~g--eCHy~~---GN~ka~rR~~~lke~l~elgie~eRv~ 98 (132)
T COG1908 30 VRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIG--ECHYIS---GNYKAKRRMELLKELLKELGIEPERVR 98 (132)
T ss_pred eEEEEeeccCccCHHHHHHHHHcCCCeEEEeccccc--ceeeec---cchHHHHHHHHHHHHHHHhCCCcceEE
Confidence 35 558899999999998888763 3334444332 111000 011245678899999999999754443
No 192
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=33.25 E-value=60 Score=30.84 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=23.3
Q ss_pred CeEEEEEccchhHHHHHHHHHHc----CCcEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA----GHSCTAFY 49 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~----G~eV~gv~ 49 (474)
+||++++|||+-+.-+..++++. |++|..+.
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~ 36 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVI 36 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 58999999999887776665443 78876554
No 193
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=33.23 E-value=89 Score=25.81 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=27.1
Q ss_pred CeEEEEEccchhHHHHHHHHH----HcCCcEEEEEEEc
Q 042717 19 LKVAVLLSGGVDSSVALRLLH----SAGHSCTAFYLKI 52 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLk----e~G~eV~gv~~~~ 52 (474)
++|+|+++|...|.-++..+. ..+.+|+.+|+..
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~ 40 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIP 40 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeec
Confidence 689999999999987665443 3488999999875
No 194
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=33.20 E-value=66 Score=26.41 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=24.5
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.+.|++-..+|.-|..++.+|+..||+
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~ 92 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYE 92 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCc
Confidence 4567888889999999999999999985
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=33.18 E-value=1.4e+02 Score=31.75 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=25.5
Q ss_pred EEEEEecCCccCCCCC------ceEEEEeCCEEEEeeEEeeecc
Q 042717 348 IAVVQLSEDDQGLAAG------QFAAFYQGTRCIGSGVILESWD 385 (474)
Q Consensus 348 ~~~v~f~ep~~avapG------Q~av~Y~g~~~lGgG~I~~~~~ 385 (474)
.++++|.+|. .+.++ +-.+|=+++..+|+|.|.....
T Consensus 380 ~v~l~~~~p~-~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~ 422 (425)
T PRK12317 380 IVKIKPTKPL-VIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKP 422 (425)
T ss_pred EEEEEECCee-EEEeCCcCCCCccEEEEECCCeEEEEEEEEecc
Confidence 4566667774 45554 5667767778999999987653
No 196
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=33.11 E-value=1.1e+02 Score=24.92 Aligned_cols=29 Identities=7% Similarity=0.025 Sum_probs=25.0
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
.+.++|++...+|.-|..++..|.+.|+.
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~ 80 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAG 80 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCc
Confidence 34568999999999999999999999986
No 197
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=32.75 E-value=59 Score=26.46 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=24.7
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc-EE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS-CT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e-V~ 46 (474)
+..+|+|-.++|..|..++..|.+.|++ |.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~ 90 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVY 90 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhE
Confidence 4567888888889999999999999987 54
No 198
>PRK08227 autoinducer 2 aldolase; Validated
Probab=32.39 E-value=2.6e+02 Score=28.16 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=56.3
Q ss_pred CCCeEEEEEccch-------hHHHH--HHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEE
Q 042717 17 KGLKVAVLLSGGV-------DSSVA--LRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEV 87 (474)
Q Consensus 17 ~~~kVlValSGGv-------DSsva--a~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~v 87 (474)
.+..+++-+|||. ++.+. ..-..+.|-+-+++|++.+..... ..-.++..+.+-|+++|+|+..
T Consensus 73 ~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~-------~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 73 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEH-------QSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHH-------HHHHHHHHHHHHHHHhCCcEEE
Confidence 3445888899862 23222 223455699999999987632110 1124556667889999999876
Q ss_pred EEcchHHHHhhHhhhHHHHhcCCC-CC-cccccchHHHHHHHHHHHHHcCCCEEEE
Q 042717 88 VHLTDEYWKNVVSYIIEEYRCGRT-PN-PDVLCNTRIKFGAFMDAISSMEFDYVAS 141 (474)
Q Consensus 88 vd~~~~f~~~V~~~~i~~y~~G~t-pN-Pci~Cnr~iKf~~l~~~A~~~Gad~IAT 141 (474)
+-. .|.. .+ +. ........+.++|+|.|=|
T Consensus 146 ~~p-----------------rG~~~~~~~~-------~ia~aaRiaaELGADiVK~ 177 (264)
T PRK08227 146 VTA-----------------VGKDMVRDAR-------YFSLATRIAAEMGAQIIKT 177 (264)
T ss_pred Eec-----------------CCCCcCchHH-------HHHHHHHHHHHHcCCEEec
Confidence 321 1211 11 11 1345567888999998855
No 199
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=32.29 E-value=1.1e+02 Score=29.17 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=38.6
Q ss_pred EEEEEccchhHHHHHHHH---HHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEc
Q 042717 21 VAVLLSGGVDSSVALRLL---HSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHL 90 (474)
Q Consensus 21 VlValSGGvDSsvaa~LL---ke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~ 90 (474)
++|+-+|-==++.+|.|+ +..|..|.-++++++- ....+..+.+|+.+|+|++....
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R-------------~ga~eQL~~~a~~l~vp~~~~~~ 64 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR-------------IGAVEQLKTYAEILGVPFYVART 64 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS-------------THHHHHHHHHHHHHTEEEEESST
T ss_pred EEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC-------------ccHHHHHHHHHHHhccccchhhc
Confidence 567777744455555444 3348999999987642 35688899999999999887543
No 200
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=31.87 E-value=4.1e+02 Score=27.64 Aligned_cols=99 Identities=20% Similarity=0.169 Sum_probs=51.5
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEE-cchHHHHhhHhhhHHHHhcCCCC
Q 042717 34 ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVH-LTDEYWKNVVSYIIEEYRCGRTP 112 (474)
Q Consensus 34 aa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd-~~~~f~~~V~~~~i~~y~~G~tp 112 (474)
++..+++.|+..+.+.+-.+... .+.+++...-+.+.++++++..+. +.. +.. .++...+..|+.+
T Consensus 141 ~i~~l~~~g~~~v~~dli~GlPg---------qt~~~~~~~l~~~~~l~~~~i~~y~l~~-~pg---T~~~~~~~~g~~~ 207 (377)
T PRK08599 141 AIANAKKAGFDNISIDLIYALPG---------QTIEDFKESLAKALALDIPHYSAYSLIL-EPK---TVFYNLMRKGKLR 207 (377)
T ss_pred HHHHHHHcCCCcEEEeeecCCCC---------CCHHHHHHHHHHHHccCCCEEeeeceee-cCC---ChhHHHHhcCCCC
Confidence 44555666776555555444311 135566666666777777654322 110 000 0112334455543
Q ss_pred CcccccchHHHHHHHHHHHHHcCCCEEEEceecc
Q 042717 113 NPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 113 NPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~ 146 (474)
-|...-...+ +..+.+.+.+.|+...-..|+++
T Consensus 208 ~~~~~~~~~~-~~~~~~~l~~~Gy~~~~~~~fa~ 240 (377)
T PRK08599 208 LPGEDLEAEM-YEYLMDEMEAHGFHQYEISNFAK 240 (377)
T ss_pred CCCHHHHHHH-HHHHHHHHHHcCCcEeeeeeeeC
Confidence 3322222222 45566777888998888888875
No 201
>PRK05320 rhodanese superfamily protein; Provisional
Probab=31.82 E-value=66 Score=32.08 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=26.7
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc-EE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS-CT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e-V~ 46 (474)
++++|++-..||..|..++.+|++.|++ |.
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~ 204 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVY 204 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceE
Confidence 5678999999999999999999999995 53
No 202
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=31.02 E-value=2.3e+02 Score=24.50 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=47.0
Q ss_pred EEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch-HHHHhhHhh
Q 042717 23 VLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD-EYWKNVVSY 101 (474)
Q Consensus 23 ValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~-~f~~~V~~~ 101 (474)
+++||=. |.--+.-|+++||+.+ +.+.. +.++ ......+..++.|+.+|+.++.+.+.. .+..+-+..
T Consensus 9 ~~vs~Q~-~~~d~~~la~~GfktV-InlRp-d~E~--------~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~ 77 (110)
T PF04273_consen 9 LSVSGQP-SPEDLAQLAAQGFKTV-INLRP-DGEE--------PGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEA 77 (110)
T ss_dssp EEEECS---HHHHHHHHHCT--EE-EE-S--TTST--------TT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHH
T ss_pred eEECCCC-CHHHHHHHHHCCCcEE-EECCC-CCCC--------CCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHH
Confidence 3445544 3334456788999854 23321 1111 112234556788999999998887763 344444555
Q ss_pred hHHHHhcCCCCCcccccchHHHHHHHHHHHHH
Q 042717 102 IIEEYRCGRTPNPDVLCNTRIKFGAFMDAISS 133 (474)
Q Consensus 102 ~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~ 133 (474)
|.+.+... ...-.+.|..-.|-..|..+++.
T Consensus 78 f~~~l~~~-~~Pvl~hC~sG~Ra~~l~~l~~~ 108 (110)
T PF04273_consen 78 FADALESL-PKPVLAHCRSGTRASALWALAQA 108 (110)
T ss_dssp HHHHHHTT-TTSEEEE-SCSHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCEEEECCCChhHHHHHHHHhh
Confidence 55554432 22245678877776777666553
No 203
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=30.91 E-value=97 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCCeEEEEEccch--hHHHHHHHHHHcCCcE
Q 042717 17 KGLKVAVLLSGGV--DSSVALRLLHSAGHSC 45 (474)
Q Consensus 17 ~~~kVlValSGGv--DSsvaa~LLke~G~eV 45 (474)
+..+|++-.++|. .|..++..|++.|++|
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v 93 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPV 93 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeE
Confidence 4567888888874 7888999999999984
No 204
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=30.80 E-value=89 Score=28.27 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=18.4
Q ss_pred CCCEEEEEecCCccCCCCCceEEEE
Q 042717 345 GENIAVVQLSEDDQGLAAGQFAAFY 369 (474)
Q Consensus 345 ~~~~~~v~f~ep~~avapGQ~av~Y 369 (474)
+++.+.|.|++| |.|||.+.+-
T Consensus 87 ~~~~i~I~f~~P---V~pG~tv~V~ 108 (146)
T PF10989_consen 87 DGRTITITFDEP---VPPGTTVTVV 108 (146)
T ss_pred CCCEEEEEeCCC---CCCCCEEEEE
Confidence 467899999999 8999987664
No 205
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=30.13 E-value=86 Score=26.34 Aligned_cols=28 Identities=29% Similarity=0.260 Sum_probs=24.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.++|++-..+|..|..++..|+..|++
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~ 104 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYK 104 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 4567888888899999999999999985
No 206
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=30.11 E-value=1.6e+02 Score=29.81 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=39.6
Q ss_pred EEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC---CCEE
Q 042717 21 VAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD---VPLE 86 (474)
Q Consensus 21 VlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG---Ipl~ 86 (474)
|++=.=+|+|-.+|+.++... ..+|.|++...+. |..+.....+.++.+.+| ||.+
T Consensus 2 vIiDtD~g~DD~~AL~~al~~p~~~v~gIt~~~Gn----------~~~~~~~~na~~~l~~~g~~diPV~ 61 (304)
T cd02650 2 LILDTDPGIDDAMALAYALAHPDVDLIGVTTVYGN----------VTIETATRNALALLELFGRPDVPVA 61 (304)
T ss_pred EEEECCCCHHHHHHHHHHhcCCCCEEEEEEEccCC----------cCHHHHHHHHHHHHHHhCCCCCCEE
Confidence 444455689999888876654 6899999987653 223456777888888887 5544
No 207
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=29.59 E-value=72 Score=30.06 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=23.2
Q ss_pred eEEEEEccchhHHHHHHHH---HHcCCcEEEEEE
Q 042717 20 KVAVLLSGGVDSSVALRLL---HSAGHSCTAFYL 50 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LL---ke~G~eV~gv~~ 50 (474)
||++++|||+-+.-+..++ ++.|++|..+.-
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~g~~V~vv~T 34 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEAGVEVHLVIS 34 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 6899999998877766655 445998876543
No 208
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=29.46 E-value=1.8e+02 Score=29.80 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=41.3
Q ss_pred CeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG 82 (474)
+||++=.-.|+|=++|+.++... ..+|.|++.-++.. ..+.....+.++++.+|
T Consensus 4 ~kvIiDtD~G~DDa~Al~~al~~p~~ev~gIttv~GN~----------~~~~~~~Nal~~l~~~g 58 (313)
T PRK09955 4 RKIILDCDPGHDDAIAMMMAAKHPAIDLLGITIVAGNQ----------TLDKTLINGLNVCQKLE 58 (313)
T ss_pred ceEEEECCCChHHHHHHHHHhcCCCcEEEEEEecCCCc----------CHHHHHHHHHHHHHHhC
Confidence 57888888899988877766554 68999999877542 23566778888888887
No 209
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=29.24 E-value=82 Score=32.36 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=26.0
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
.++++|+|-..||.-|+.++.+|++.||+
T Consensus 169 ~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~ 197 (314)
T PRK00142 169 LKDKKVVMYCTGGIRCEKASAWMKHEGFK 197 (314)
T ss_pred CCcCeEEEECCCCcHHHHHHHHHHHcCCC
Confidence 35678999999999999999999999985
No 210
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=28.97 E-value=1.8e+02 Score=29.66 Aligned_cols=53 Identities=19% Similarity=0.035 Sum_probs=38.1
Q ss_pred eEEEEEccchhHHHHHHHHHH-cCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC
Q 042717 20 KVAVLLSGGVDSSVALRLLHS-AGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82 (474)
Q Consensus 20 kVlValSGGvDSsvaa~LLke-~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG 82 (474)
||++=.-.|+|-++|+.++.. ...+|.|++..++. +..+...+.+.++.+.+|
T Consensus 2 kviiDtD~g~DD~~Al~~al~~~~~~l~gIt~v~GN----------~~~~~~~~na~~~l~~~g 55 (306)
T cd02649 2 KLIIDTDCGGDDAWALLMALASPNVEVLAITCVHGN----------TNVEQVVKNALRVLEACG 55 (306)
T ss_pred eEEEECCCChHHHHHHHHHhcCCCceEEEEEEccCC----------cCHHHHHHHHHHHHHHhC
Confidence 566666788888888777654 47899999987653 223455777888887766
No 211
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.96 E-value=5.1e+02 Score=26.35 Aligned_cols=139 Identities=9% Similarity=0.071 Sum_probs=72.9
Q ss_pred HHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCccccc
Q 042717 39 HSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLC 118 (474)
Q Consensus 39 ke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~C 118 (474)
++.|....-+.+..+++++ |..-.+.-++.|+.+||.++.+++.+.-.+
T Consensus 25 ~~~g~~P~Laii~vg~d~a---------s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~---------------------- 73 (282)
T PRK14169 25 AQQDVTPTLAVVLVGSDPA---------SEVYVRNKQRRAEDIGVRSLMFRLPEATTQ---------------------- 73 (282)
T ss_pred HhCCCCCeEEEEEeCCChh---------HHHHHHHHHHHHHHcCCEEEEEECCCCCCH----------------------
Confidence 3446666555565554331 344566778899999999999999742111
Q ss_pred chHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhhhcccc---ccccCCCH
Q 042717 119 NTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI---FPLGCISK 195 (474)
Q Consensus 119 nr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i---~PL~~ltK 195 (474)
.-+.+..++++.|--.+|-... .|-+....+. .+....++.||= -+++...+.++. .-+.-.|=
T Consensus 74 ------~el~~~I~~lN~D~~V~GIlvq--lPLp~~i~~~-~i~~~I~p~KDV----DGl~~~N~g~l~~~~~~~~PcTp 140 (282)
T PRK14169 74 ------ADLLAKVAELNHDPDVDAILVQ--LPLPAGLDEQ-AVIDAIDPDKDV----DGFSPVSVGRLWANEPTVVASTP 140 (282)
T ss_pred ------HHHHHHHHHHhCCCCCCEEEEe--CCCCCCCCHH-HHHhhcCcccCc----ccCChhhhHHHhcCCCCCCCCCH
Confidence 1122333334433333333222 1212111222 233445556653 233332222221 11455678
Q ss_pred HHHHHHHHHcCCCCcCCCCCcccccccccc
Q 042717 196 EEVRKFATQFDLPNKDRKDSQGICFLGKIK 225 (474)
Q Consensus 196 ~EVr~lA~~~GLp~~~k~~S~diCFl~~~~ 225 (474)
.-|.++.+.+|++... ..+|-+++..
T Consensus 141 ~avi~lL~~~~i~l~G----k~vvViGrS~ 166 (282)
T PRK14169 141 YGIMALLDAYDIDVAG----KRVVIVGRSN 166 (282)
T ss_pred HHHHHHHHHhCCCCCC----CEEEEECCCc
Confidence 8889999999987743 3577777653
No 212
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=28.89 E-value=1.9e+02 Score=29.68 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=39.6
Q ss_pred CeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEE--cCCCCCcccccCCCCCHHhHHHHHHHHHHcC
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLK--IWFQEDFENFWTECPWEEDMKYAKAVCDQVD 82 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~--~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG 82 (474)
+||++=.-+|+|-++|+.++... ..+|.|++.. .+. |..+.....+.++++.+|
T Consensus 1 ~~vIiDtD~g~DDa~Al~~al~~p~i~l~gIt~v~~~GN----------~~~~~~~~na~~ll~~~g 57 (312)
T cd02647 1 KNVIFDHDGNVDDLVALLLLLKNEKVDLKGIGVSGIDAD----------CYVEPAVSVTRKLIDRLG 57 (312)
T ss_pred CCEEEeCCCCchHHHHHHHHhhCCCcceEEEEEecCcCC----------ccHHHHHHHHHHHHHHhC
Confidence 35777777899998888776655 5899999987 442 233556778888888876
No 213
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=28.74 E-value=2.1e+02 Score=29.52 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=45.4
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcC-CcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCC
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAG-HSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDV 83 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G-~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGI 83 (474)
.+||++=.-+|.|=++++.++.... .++.|++.-.+. +.-++....|+.+++.+|+
T Consensus 2 ~~kiiiD~DpG~DDaiAlllal~~p~i~l~giTtv~GN----------v~le~t~~Na~~~l~~~g~ 58 (311)
T COG1957 2 MRKIIIDCDPGHDDAIALLLALASPEIDLLGITTVAGN----------VPLEQTTRNALSVLELLGR 58 (311)
T ss_pred CceEEEeCCCChhHHHHHHHHhcCCCceEEEEEEecCc----------ccHhHHHHHHHHHHHHcCC
Confidence 3678888999999999888888775 899999998764 2346778888999998874
No 214
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=28.71 E-value=78 Score=33.65 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=25.8
Q ss_pred CCeEEEEEccchh---HHHHHHHHHHcCCcEEEEE
Q 042717 18 GLKVAVLLSGGVD---SSVALRLLHSAGHSCTAFY 49 (474)
Q Consensus 18 ~~kVlValSGGvD---Ssvaa~LLke~G~eV~gv~ 49 (474)
+++|+|++|||+. |.-++..|.+.|++|..+-
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L~~~ga~v~vvm 38 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLLRRSGAEVRVVM 38 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHHhhCCCeeEEEc
Confidence 4589999999998 4566777888899988653
No 215
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=28.57 E-value=86 Score=26.81 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.++|++...+|.-|..++..|++.||.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~ 90 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFT 90 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCC
Confidence 4567888888999999999999999985
No 216
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=28.51 E-value=1.2e+02 Score=23.43 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=24.6
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
.+..+|++-..+|..|..++..|++.|+.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~ 76 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGT 76 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcc
Confidence 45567888888899999999999999865
No 217
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=28.14 E-value=1.1e+02 Score=25.12 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=23.1
Q ss_pred CCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 18 GLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 18 ~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
.+.|++-..+|..|..++..|+..|++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVP 91 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCC
Confidence 456888888889999999999999996
No 218
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=28.00 E-value=1.4e+02 Score=25.45 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=25.5
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCT 46 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~ 46 (474)
...+|++-..+|..|..++..|.+.||+.+
T Consensus 59 ~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v 88 (104)
T PRK10287 59 KNDTVKLYCNAGRQSGQAKEILSEMGYTHA 88 (104)
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCeE
Confidence 445688888999999999999999999764
No 219
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.61 E-value=6.9e+02 Score=25.67 Aligned_cols=147 Identities=8% Similarity=0.002 Sum_probs=78.0
Q ss_pred HcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccc
Q 042717 40 SAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCN 119 (474)
Q Consensus 40 e~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cn 119 (474)
+.|+...-+.+..+++++ |..-.+.-.+.|+++||.++.+.+.+.-.+
T Consensus 29 ~~g~~P~LaiI~vg~d~a---------s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~----------------------- 76 (301)
T PRK14194 29 AAGIEPALAVILVGNDPA---------SQVYVRNKILRAEEAGIRSLEHRLPADTSQ----------------------- 76 (301)
T ss_pred hCCCCCeEEEEEeCCChh---------HHHHHHHHHHHHHHcCCEEEEEECCCCCCH-----------------------
Confidence 346666555555554321 334466677899999999999998642111
Q ss_pred hHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhhhcccc---ccccCCCHH
Q 042717 120 TRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI---FPLGCISKE 196 (474)
Q Consensus 120 r~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i---~PL~~ltK~ 196 (474)
..+.+..++++.|-=.+|-... .|-+....+. .+....++.||= -++++..+.++. ..+.-.|=.
T Consensus 77 -----~~l~~~I~~lN~D~~V~GIlvq--lPLP~~i~~~-~i~~~I~p~KDV----DGl~~~N~g~l~~~~~~~~PcTp~ 144 (301)
T PRK14194 77 -----ARLLALIAELNADPSVNGILLQ--LPLPAHIDEA-RVLQAINPLKDV----DGFHSENVGGLSQGRDVLTPCTPS 144 (301)
T ss_pred -----HHHHHHHHHHcCCCCCCeEEEe--CCCCCCCCHH-HHHhccCchhcc----CccChhhhhHHhcCCCCCCCCcHH
Confidence 1123333334444333333322 1211111121 233444555653 233322222221 224556888
Q ss_pred HHHHHHHHcCCCCcCCCCCccccccccc-chHHHHHhhh
Q 042717 197 EVRKFATQFDLPNKDRKDSQGICFLGKI-KFSEFVARHI 234 (474)
Q Consensus 197 EVr~lA~~~GLp~~~k~~S~diCFl~~~-~~~~fL~~~~ 234 (474)
-|.++.+.+|++... ..++|+|.. ....=+..++
T Consensus 145 aii~lL~~~~i~l~G----k~V~vIG~s~ivG~PmA~~L 179 (301)
T PRK14194 145 GCLRLLEDTCGDLTG----KHAVVIGRSNIVGKPMAALL 179 (301)
T ss_pred HHHHHHHHhCCCCCC----CEEEEECCCCccHHHHHHHH
Confidence 899999999987643 368999875 4555555554
No 220
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=27.60 E-value=86 Score=33.29 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=25.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHHH---cCCcEEEEE
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHS---AGHSCTAFY 49 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke---~G~eV~gv~ 49 (474)
.++||++++||+..+.-++.++++ .|++|..+.
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~~~g~~V~vv~ 37 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIM 37 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 467999999999998777666544 488887543
No 221
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.56 E-value=2.9e+02 Score=23.87 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=42.8
Q ss_pred CeEEEEEccchhHHHHHHHHHHc----CCcEE--EEEEEcCCCCCccccc---CCCCCHHhHHHHHHHHHHcCCCEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA----GHSCT--AFYLKIWFQEDFENFW---TECPWEEDMKYAKAVCDQVDVPLEVVH 89 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~----G~eV~--gv~~~~~~~~~~~~~~---~~c~s~~d~~~a~~va~~LGIpl~vvd 89 (474)
++|++.+|+|.-|++++.-+++. |.++. ++.-.-.. +....++ -+-.-.-....+++.++..|||..++|
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~-~~~~~~DvvLlGPQv~y~~~~~~~~~~~~giPV~vI~ 80 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELS-EYIDNADVVLLGPQVRYMLKQLKEAAEEKGIPVEVID 80 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHH-HhhhcCCEEEEChHHHHHHHHHHHHhcccCCCeEEeC
Confidence 57999999999999999887765 55543 22111000 0000000 000011235678889999999999998
Q ss_pred cc
Q 042717 90 LT 91 (474)
Q Consensus 90 ~~ 91 (474)
..
T Consensus 81 ~~ 82 (102)
T COG1440 81 ML 82 (102)
T ss_pred HH
Confidence 63
No 222
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=27.52 E-value=1.2e+02 Score=24.85 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=23.9
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.++|++-..+|.-|+.++.+|.+.|+.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFE 84 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCc
Confidence 3567888888899999999999999985
No 223
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=27.50 E-value=4.7e+02 Score=27.44 Aligned_cols=39 Identities=26% Similarity=0.756 Sum_probs=30.0
Q ss_pred CCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcC
Q 042717 63 TECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCG 109 (474)
Q Consensus 63 ~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G 109 (474)
++| ..+|+-..-.+|+.||+|- ..+||+.|++ +.+|.+-
T Consensus 270 gsc-fqkdilnlvyice~lnlpe-----va~ywqqvi~--~ndyqkr 308 (481)
T KOG2666|consen 270 GSC-FQKDILNLVYICECLNLPE-----VAEYWQQVIK--INDYQKR 308 (481)
T ss_pred chh-HHHHHHHHHHHHhcCCChH-----HHHHHHHHhh--hhHHHHH
Confidence 445 5789999999999999863 3589999987 5777653
No 224
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=27.41 E-value=2.8e+02 Score=29.00 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=53.2
Q ss_pred EEEcc-chhHHH--HHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhH
Q 042717 23 VLLSG-GVDSSV--ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVV 99 (474)
Q Consensus 23 ValSG-GvDSsv--aa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~ 99 (474)
|++=| |+=+|. +|++|+++|+.|.-..-++. ....++..+.+++++|+++..-.
T Consensus 145 vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTF-------------RAaAiEQL~~w~er~gv~vI~~~---------- 201 (340)
T COG0552 145 VGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTF-------------RAAAIEQLEVWGERLGVPVISGK---------- 201 (340)
T ss_pred EecCCCchHhHHHHHHHHHHHCCCeEEEEecchH-------------HHHHHHHHHHHHHHhCCeEEccC----------
Confidence 44444 454444 56777888999987766652 14568899999999999875432
Q ss_pred hhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEE
Q 042717 100 SYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVAS 141 (474)
Q Consensus 100 ~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IAT 141 (474)
.|..|. .+-|.+ .+.|+..|+|.|.-
T Consensus 202 --------~G~DpA-------aVafDA-i~~Akar~~Dvvli 227 (340)
T COG0552 202 --------EGADPA-------AVAFDA-IQAAKARGIDVVLI 227 (340)
T ss_pred --------CCCCcH-------HHHHHH-HHHHHHcCCCEEEE
Confidence 133331 133554 56788899998864
No 225
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.35 E-value=2.9e+02 Score=29.85 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCCEEEEceeccc
Q 042717 125 GAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 125 ~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
..|.++|++.|...+..||.-.+
T Consensus 200 ~~L~~~AK~~~i~~fiVGHVTKe 222 (456)
T COG1066 200 AELMRLAKTKNIAIFIVGHVTKE 222 (456)
T ss_pred HHHHHHHHHcCCeEEEEEEEccc
Confidence 55788999999999999998753
No 226
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=27.32 E-value=2e+02 Score=29.25 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=43.1
Q ss_pred CeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC--CCEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD--VPLE 86 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG--Ipl~ 86 (474)
+||++=.-.|+|-++|+.++... ..+|.|++...+. |..+...+.+.++.+.+| ||.+
T Consensus 3 ~kvIiDtD~g~DDa~Al~~al~~p~~~v~git~v~GN----------~~~~~~~~na~~~l~~~g~dIPV~ 63 (304)
T PRK10768 3 LPIILDTDPGIDDAVAIAAALFAPELDLKLITTVAGN----------VSVEKTTRNALKLLHFFNSDVPVA 63 (304)
T ss_pred CCEEEECCCCHHHHHHHHHHhcCCCceEEEEEecCCc----------ccHHHHHHHHHHHHHHhCCCCeEE
Confidence 47888888899999988777654 5899999987653 233556778888888887 4544
No 227
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=26.82 E-value=6.4e+02 Score=25.06 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=37.9
Q ss_pred EEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEc
Q 042717 24 LLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHL 90 (474)
Q Consensus 24 alSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~ 90 (474)
...|+.|..-+..++++.+.+++ +...+++ ...-.+.+.+.|+++|||+..+.-
T Consensus 47 v~~g~l~~~~l~~~l~~~~i~~V-IDAtHPf------------A~~is~~a~~a~~~~~ipylR~eR 100 (256)
T TIGR00715 47 VHTGALDPQELREFLKRHSIDIL-VDATHPF------------AAQITTNATAVCKELGIPYVRFER 100 (256)
T ss_pred EEECCCCHHHHHHHHHhcCCCEE-EEcCCHH------------HHHHHHHHHHHHHHhCCcEEEEEC
Confidence 34788888777788888887754 2222221 234567899999999999988754
No 228
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=25.47 E-value=1.8e+02 Score=31.78 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=53.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEE-EEcc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEV-VHLT 91 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~v-vd~~ 91 (474)
+.-||+.-++=-.+|-=.+.-|.+.|-+|.-++|.|+..+ .+..-++.++++++++|.|.-+ +|+.
T Consensus 5 ~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e---------~h~~~i~~vR~~~~~~~~~vaIl~Dlk 71 (477)
T COG0469 5 RKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHE---------EHKKRIDNVREAAEKLGRPVAILLDLK 71 (477)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChH---------HHHHHHHHHHHHHHHhCCceEEEEcCC
Confidence 4457888888888888888889999999999999887543 2456789999999999999875 4553
No 229
>PRK01415 hypothetical protein; Validated
Probab=25.39 E-value=97 Score=30.86 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=26.2
Q ss_pred CCCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
.++++|++-+.||.=|..++.+|+++|++
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYD 197 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCC
Confidence 45678999999999999999999999985
No 230
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=25.22 E-value=1.1e+02 Score=32.69 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=24.3
Q ss_pred CCCCeEEEEEccchhHHHHHHHH---HHcCCcEEEEE
Q 042717 16 QKGLKVAVLLSGGVDSSVALRLL---HSAGHSCTAFY 49 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsvaa~LL---ke~G~eV~gv~ 49 (474)
.++++|++++||++-..-+..++ ++.|++|..+.
T Consensus 4 l~~k~IllgvTGsiaa~k~~~lv~~L~~~g~~V~vv~ 40 (399)
T PRK05579 4 LAGKRIVLGVSGGIAAYKALELVRRLRKAGADVRVVM 40 (399)
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 35689999999999666555444 45599987543
No 231
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=25.17 E-value=1.9e+02 Score=27.72 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=35.5
Q ss_pred CCeE-EEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEE
Q 042717 18 GLKV-AVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVV 88 (474)
Q Consensus 18 ~~kV-lValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vv 88 (474)
+.|+ -+|.--|-||..+| ++|++|+++-. ++..++.++++|++-++++...
T Consensus 31 ~g~~LDlgcG~GRNalyLA----~~G~~VtAvD~----------------s~~al~~l~~~a~~~~l~i~~~ 82 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLA----SQGFDVTAVDI----------------SPVALEKLQRLAEEEGLDIRTR 82 (192)
T ss_dssp SSEEEEES-TTSHHHHHHH----HTT-EEEEEES----------------SHHHHHHHHHHHHHTT-TEEEE
T ss_pred CCcEEEcCCCCcHHHHHHH----HCCCeEEEEEC----------------CHHHHHHHHHHHhhcCceeEEE
Confidence 4454 47888899988754 67999998643 4567888999999888886544
No 232
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.78 E-value=7.5e+02 Score=25.16 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=74.6
Q ss_pred HHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccc
Q 042717 38 LHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVL 117 (474)
Q Consensus 38 Lke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~ 117 (474)
|++.|....-+.+..++++ .|..-.+.-.+.|+.+||....+++.+.-.+
T Consensus 24 l~~~g~~P~Laii~vg~d~---------as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~--------------------- 73 (282)
T PRK14166 24 LKSKGIESCLAVILVGDNP---------ASQTYVKSKAKACEECGIKSLVYHLNENTTQ--------------------- 73 (282)
T ss_pred HHhCCCCceEEEEEeCCCH---------HHHHHHHHHHHHHHHcCCEEEEEECCCCCCH---------------------
Confidence 3444666655555555432 1334466778899999999999999742111
Q ss_pred cchHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhhhcccc----ccccCC
Q 042717 118 CNTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI----FPLGCI 193 (474)
Q Consensus 118 Cnr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i----~PL~~l 193 (474)
..+.+..++++.|-=.+|-... .|-+....+. .+....++.||=. +++...+.++. ..+.-.
T Consensus 74 -------~~l~~~I~~lN~D~~V~GIivq--~PLP~~i~~~-~i~~~I~p~KDVD----Gl~~~N~g~l~~g~~~~~~Pc 139 (282)
T PRK14166 74 -------NELLALINTLNHDDSVHGILVQ--LPLPDHICKD-LILESIISSKDVD----GFHPINVGYLNLGLESGFLPC 139 (282)
T ss_pred -------HHHHHHHHHHhCCCCCCEEEEe--CCCCCCCCHH-HHHhccCcccCcc----cCChhhhHHHhcCCCCCCcCC
Confidence 1123333444444333333322 1211111222 2333455666633 33322222221 134566
Q ss_pred CHHHHHHHHHHcCCCCcCCCCCcccccccccc
Q 042717 194 SKEEVRKFATQFDLPNKDRKDSQGICFLGKIK 225 (474)
Q Consensus 194 tK~EVr~lA~~~GLp~~~k~~S~diCFl~~~~ 225 (474)
|=.-|.++.+.+|++... ..+|-+++..
T Consensus 140 Tp~avi~lL~~y~i~l~G----k~vvVvGrS~ 167 (282)
T PRK14166 140 TPLGVMKLLKAYEIDLEG----KDAVIIGASN 167 (282)
T ss_pred CHHHHHHHHHHhCCCCCC----CEEEEECCCC
Confidence 888899999999987643 4678887753
No 233
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=24.60 E-value=7.5e+02 Score=25.54 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEE-EcchHHHHhhHhhhHHHHhcCCCC
Q 042717 34 ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVV-HLTDEYWKNVVSYIIEEYRCGRTP 112 (474)
Q Consensus 34 aa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vv-d~~~~f~~~V~~~~i~~y~~G~tp 112 (474)
++..+++.|++.+.+.+..+... .+.+++...-+.+.++++++..+ .+... .. .++.+.+..|..+
T Consensus 140 ai~~l~~~g~~~v~~dli~GlPg---------qt~e~~~~~l~~~~~l~~~~is~y~l~~~-pg---T~l~~~~~~g~~~ 206 (374)
T PRK05799 140 NYKLARKLGFNNINVDLMFGLPN---------QTLEDWKETLEKVVELNPEHISCYSLIIE-EG---TPFYNLYENGKLK 206 (374)
T ss_pred HHHHHHHcCCCcEEEEeecCCCC---------CCHHHHHHHHHHHHhcCCCEEEEeccEec-CC---CHHHHHHhcCCCC
Confidence 44566666776444555544311 23566666666677788765422 22210 00 1122334455443
Q ss_pred CcccccchHHHHHHHHHHHHHcCCCEEEEceecc
Q 042717 113 NPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 113 NPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~ 146 (474)
.|...-...+ |....+.+.+.|+...-..|+++
T Consensus 207 ~~~~~~~~~~-~~~~~~~l~~~Gy~~ye~~~fa~ 239 (374)
T PRK05799 207 LPDEEEEREM-YHYTIEFLKEKGYHQYEISNFAK 239 (374)
T ss_pred CCChHHHHHH-HHHHHHHHHHcCCcEEeeeeeEC
Confidence 3433322222 55566777788999888888886
No 234
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.49 E-value=7.3e+02 Score=25.27 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=73.7
Q ss_pred HHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCccccc
Q 042717 39 HSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLC 118 (474)
Q Consensus 39 ke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~C 118 (474)
++.|+...-..+..++++ .|..-.+.-.+.|+++||.+..+.+.+...+
T Consensus 27 ~~~g~~P~LaiI~vg~d~---------as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~---------------------- 75 (284)
T PRK14193 27 KEKGITPGLGTVLVGDDP---------GSQAYVRGKHRDCAEVGITSIRRDLPADATQ---------------------- 75 (284)
T ss_pred HhCCCCceEEEEEeCCCH---------HHHHHHHHHHHHHHHcCCEEEEEECCCCCCH----------------------
Confidence 334666655555555432 1334466778899999999999998743211
Q ss_pred chHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhhhcccc---ccccCCCH
Q 042717 119 NTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI---FPLGCISK 195 (474)
Q Consensus 119 nr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i---~PL~~ltK 195 (474)
.-+.+..++++.|--.+|-... .|-+....+. .+..+.++.||= -+++...+.++. ..+.-.|=
T Consensus 76 ------~el~~~I~~lN~D~~V~GIlvq--lPlP~~id~~-~i~~~I~p~KDV----DGl~~~n~g~l~~~~~~~~PcTp 142 (284)
T PRK14193 76 ------EELNAVIDELNADPACTGYIVQ--LPLPKHLDEN-AVLERIDPAKDA----DGLHPTNLGRLVLNEPAPLPCTP 142 (284)
T ss_pred ------HHHHHHHHHHhCCCCCCEEEEe--CCCCCCCCHH-HHHhcCCcccCc----cCCChhhhhHHhCCCCCCCCCCH
Confidence 1123334444455444444332 2222111222 233445556653 233322222221 12345678
Q ss_pred HHHHHHHHHcCCCCcCCCCCccccccccc
Q 042717 196 EEVRKFATQFDLPNKDRKDSQGICFLGKI 224 (474)
Q Consensus 196 ~EVr~lA~~~GLp~~~k~~S~diCFl~~~ 224 (474)
.-|.++.+.+|++... ..+|-+++.
T Consensus 143 ~av~~ll~~~~i~l~G----k~vvViGrS 167 (284)
T PRK14193 143 RGIVHLLRRYDVELAG----AHVVVIGRG 167 (284)
T ss_pred HHHHHHHHHhCCCCCC----CEEEEECCC
Confidence 8899999999987643 357777764
No 235
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.09 E-value=7.7e+02 Score=25.08 Aligned_cols=138 Identities=6% Similarity=0.020 Sum_probs=73.4
Q ss_pred HHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCccccc
Q 042717 39 HSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLC 118 (474)
Q Consensus 39 ke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~C 118 (474)
++.|....-+.+..+++++ |..-.+.-.+.|+.+||.+..+.+.+.-.
T Consensus 26 ~~~g~~P~Laii~vg~d~a---------s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~----------------------- 73 (284)
T PRK14170 26 VKEGKKPGLAVVLVGDNQA---------SRTYVRNKQKRTEEAGMKSVLIELPENVT----------------------- 73 (284)
T ss_pred HhCCCCCeEEEEEeCCCHH---------HHHHHHHHHHHHHHcCCEEEEEECCCCCC-----------------------
Confidence 3446666555555554321 33446677889999999999999874211
Q ss_pred chHHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhhhcccc---ccccCCCH
Q 042717 119 NTRIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI---FPLGCISK 195 (474)
Q Consensus 119 nr~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i---~PL~~ltK 195 (474)
-.-+.+..++++.|--++|-... .|-+....+. .+....++.||= -++++..+.++. ..+.-.|=
T Consensus 74 -----~~el~~~I~~lN~D~~V~GIivq--lPlP~~i~~~-~i~~~I~p~KDV----DGl~p~N~g~l~~~~~~~~PcTp 141 (284)
T PRK14170 74 -----EEKLLSVVEELNEDKTIHGILVQ--LPLPEHISEE-KVIDTISYDKDV----DGFHPVNVGNLFIGKDSFVPCTP 141 (284)
T ss_pred -----HHHHHHHHHHHhCCCCCCeEEEe--cCCCCCCCHH-HHHhccCcccCc----ccCChhhhhHHhCCCCCCCCCCH
Confidence 11233344444444444443332 2211111222 233445556663 233332222221 22456677
Q ss_pred HHHHHHHHHcCCCCcCCCCCccccccccc
Q 042717 196 EEVRKFATQFDLPNKDRKDSQGICFLGKI 224 (474)
Q Consensus 196 ~EVr~lA~~~GLp~~~k~~S~diCFl~~~ 224 (474)
.-|.++.+.+|++... ..+|-+++.
T Consensus 142 ~avi~lL~~~~i~l~G----k~vvVvGrS 166 (284)
T PRK14170 142 AGIIELIKSTGTQIEG----KRAVVIGRS 166 (284)
T ss_pred HHHHHHHHHhCCCCCC----CEEEEECCC
Confidence 8888888888886643 357777764
No 236
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.06 E-value=1.4e+02 Score=28.78 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=52.7
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCC
Q 042717 34 ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPN 113 (474)
Q Consensus 34 aa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpN 113 (474)
+...+++.|+.|.-++-- -...++.+++.||+.+.+-+.-... +..-.|+.-.
T Consensus 85 lv~~lk~~G~~v~iiSgg------------------~~~lv~~ia~~lg~d~~~an~l~~~---------dG~ltG~v~g 137 (212)
T COG0560 85 LVAALKAAGAKVVIISGG------------------FTFLVEPIAERLGIDYVVANELEID---------DGKLTGRVVG 137 (212)
T ss_pred HHHHHHHCCCEEEEEcCC------------------hHHHHHHHHHHhCCchheeeEEEEe---------CCEEeceeee
Confidence 556677889988655321 1367999999999987655432100 0001122221
Q ss_pred cccccchHHHHHHHHHHHHHcCCC---EEEEceecc
Q 042717 114 PDVLCNTRIKFGAFMDAISSMEFD---YVASGHYAK 146 (474)
Q Consensus 114 Pci~Cnr~iKf~~l~~~A~~~Gad---~IATGH~a~ 146 (474)
..|.+.-|-..+.+++.++|.+ .+|.|..++
T Consensus 138 --~~~~~~~K~~~l~~~~~~~g~~~~~~~a~gDs~n 171 (212)
T COG0560 138 --PICDGEGKAKALRELAAELGIPLEETVAYGDSAN 171 (212)
T ss_pred --eecCcchHHHHHHHHHHHcCCCHHHeEEEcCchh
Confidence 2355445778889999999986 788887765
No 237
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=23.84 E-value=1.2e+02 Score=28.97 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=24.1
Q ss_pred CeEEEEEccchhHHHHH-HHH---HHcCCcEEEEEEE
Q 042717 19 LKVAVLLSGGVDSSVAL-RLL---HSAGHSCTAFYLK 51 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa-~LL---ke~G~eV~gv~~~ 51 (474)
+||++|+||+.=+..+. .++ ++.|++|..+.-.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~ 37 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSE 37 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEch
Confidence 47999999998877765 444 4459998866543
No 238
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.75 E-value=2.8e+02 Score=24.71 Aligned_cols=78 Identities=12% Similarity=0.013 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCC
Q 042717 33 VALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTP 112 (474)
Q Consensus 33 vaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tp 112 (474)
-.|..|++.|++|++.-++- | -+. .|+.+++-|+.. +-+.-|+.. ..
T Consensus 27 ~VA~~L~e~g~dv~atDI~~------------~-----------~a~-~g~~~v~DDitn--------P~~~iY~~A-~l 73 (129)
T COG1255 27 DVAKRLAERGFDVLATDINE------------K-----------TAP-EGLRFVVDDITN--------PNISIYEGA-DL 73 (129)
T ss_pred HHHHHHHHcCCcEEEEeccc------------c-----------cCc-ccceEEEccCCC--------ccHHHhhCc-cc
Confidence 35667888899988876541 1 123 677777766643 323334322 11
Q ss_pred CcccccchHHHHHHHHHHHHHcCCCEEEEcee
Q 042717 113 NPDVLCNTRIKFGAFMDAISSMEFDYVASGHY 144 (474)
Q Consensus 113 NPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~ 144 (474)
-=.+.|-+.+ +..+++.+++.|++.+.+--+
T Consensus 74 IYSiRpppEl-~~~ildva~aVga~l~I~pL~ 104 (129)
T COG1255 74 IYSIRPPPEL-QSAILDVAKAVGAPLYIKPLT 104 (129)
T ss_pred eeecCCCHHH-HHHHHHHHHhhCCCEEEEecC
Confidence 1123455555 688999999999998876444
No 239
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=23.60 E-value=1.1e+02 Score=26.13 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.7
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCC
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGH 43 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~ 43 (474)
..+.|++-..+|.-|..++..|++.||
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~ 97 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGL 97 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCC
Confidence 456788888899999999999999999
No 240
>PLN02160 thiosulfate sulfurtransferase
Probab=23.19 E-value=1e+02 Score=27.43 Aligned_cols=28 Identities=25% Similarity=0.113 Sum_probs=25.2
Q ss_pred CCCeEEEEEccchhHHHHHHHHHHcCCc
Q 042717 17 KGLKVAVLLSGGVDSSVALRLLHSAGHS 44 (474)
Q Consensus 17 ~~~kVlValSGGvDSsvaa~LLke~G~e 44 (474)
+.++|++-+.+|..|..++..|++.||.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~ 107 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYK 107 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCC
Confidence 4568999999999999999999999985
No 241
>PRK01060 endonuclease IV; Provisional
Probab=22.95 E-value=7.1e+02 Score=24.24 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=54.8
Q ss_pred EEEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHh
Q 042717 21 VAVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVS 100 (474)
Q Consensus 21 VlValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~ 100 (474)
+....+||.+. ++..+++.|++-+=+++..... . .....++.+++..++.+++.|+.+-.+-....|.-..
T Consensus 6 ~~~~~~~~~~~--~l~~~~~~G~d~vEl~~~~p~~--~---~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl-- 76 (281)
T PRK01060 6 AHVSAAGGLEG--AVAEAAEIGANAFMIFTGNPQQ--W---KRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINL-- 76 (281)
T ss_pred EeeecCCCHHH--HHHHHHHcCCCEEEEECCCCCC--C---cCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecC--
Confidence 34557888766 4567888999866555432211 0 0111246678889999999999832111111110000
Q ss_pred hhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEE
Q 042717 101 YIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVAS 141 (474)
Q Consensus 101 ~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IAT 141 (474)
..|+|-+.=...-.+...+++|.++|+..|.+
T Consensus 77 ---------~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~ 108 (281)
T PRK01060 77 ---------GNPNKEILEKSRDFLIQEIERCAALGAKLLVF 108 (281)
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 01122111111113455678899999998765
No 242
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.88 E-value=7.8e+02 Score=25.02 Aligned_cols=137 Identities=8% Similarity=0.065 Sum_probs=71.6
Q ss_pred cCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccch
Q 042717 41 AGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNT 120 (474)
Q Consensus 41 ~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr 120 (474)
.|....-+.+..+++++ |..-.+..++.|+.+||.+..+++.+.-.
T Consensus 29 ~g~~P~Laii~vg~d~a---------s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~------------------------- 74 (284)
T PRK14190 29 QGIVPGLAVILVGDDPA---------SHSYVRGKKKAAEKVGIYSELYEFPADIT------------------------- 74 (284)
T ss_pred CCCCCeEEEEEeCCCHH---------HHHHHHHHHHHHHHcCCEEEEEECCCCCC-------------------------
Confidence 36555444555554321 33446677899999999999999874211
Q ss_pred HHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhhhcccc---ccccCCCHHH
Q 042717 121 RIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI---FPLGCISKEE 197 (474)
Q Consensus 121 ~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i---~PL~~ltK~E 197 (474)
-.-|.+..++++.|-=.+|-... .|-+....+. .+....++.||= -++++..+.++. ..+.-.|=.-
T Consensus 75 ---~~el~~~I~~lN~D~~V~GIlvq--~PLp~~i~~~-~i~~~I~p~KDV----DGl~~~n~g~l~~~~~~~~PcTp~a 144 (284)
T PRK14190 75 ---EEELLALIDRLNADPRINGILVQ--LPLPKHIDEK-AVIERISPEKDV----DGFHPINVGRMMLGQDTFLPCTPHG 144 (284)
T ss_pred ---HHHHHHHHHHHhCCCCCCEEEEe--CCCCCCCCHH-HHHhcCCccccc----cccCHhhHHHHhcCCCCCCCCCHHH
Confidence 11223333444444333333322 1211111222 233344555653 233332222221 1245578888
Q ss_pred HHHHHHHcCCCCcCCCCCcccccccccc
Q 042717 198 VRKFATQFDLPNKDRKDSQGICFLGKIK 225 (474)
Q Consensus 198 Vr~lA~~~GLp~~~k~~S~diCFl~~~~ 225 (474)
|.++.+.+|++... ..+|-+++..
T Consensus 145 v~~lL~~~~i~l~G----k~vvViGrS~ 168 (284)
T PRK14190 145 ILELLKEYNIDISG----KHVVVVGRSN 168 (284)
T ss_pred HHHHHHHcCCCCCC----CEEEEECCCC
Confidence 99999999987643 3577777643
No 243
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=22.83 E-value=7.2e+02 Score=24.26 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=51.7
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHc-CCCEEEEEcchHHHHhhHhhhHHHHhcCCCC
Q 042717 34 ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQV-DVPLEVVHLTDEYWKNVVSYIIEEYRCGRTP 112 (474)
Q Consensus 34 aa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~L-GIpl~vvd~~~~f~~~V~~~~i~~y~~G~tp 112 (474)
++.++++.||+.+-+.++..... . ..-.+..+.+..++.+++. ++.+.+.-. |.... ..|
T Consensus 15 ~l~~a~~~G~d~vEl~~~~~~~~--~---~~~~~~~~~~~l~~~~~~~~~~~i~~~~~---~~~~~-----------~~~ 75 (279)
T cd00019 15 ALKRAKEIGFDTVAMFLGNPRSW--L---SRPLKKERAEKFKAIAEEGPSICLSVHAP---YLINL-----------ASP 75 (279)
T ss_pred HHHHHHHcCCCEEEEEcCCCCcc--C---CCCCCHHHHHHHHHHHHHcCCCcEEEEcC---ceecc-----------CCC
Confidence 56778889999887777643210 0 0011457888999999998 666554321 10000 012
Q ss_pred CcccccchHHHHHHHHHHHHHcCCCEEEE
Q 042717 113 NPDVLCNTRIKFGAFMDAISSMEFDYVAS 141 (474)
Q Consensus 113 NPci~Cnr~iKf~~l~~~A~~~Gad~IAT 141 (474)
+|...-...-.+....++|.++|++++.+
T Consensus 76 ~~~~r~~~~~~~~~~i~~A~~lG~~~v~~ 104 (279)
T cd00019 76 DKEKREKSIERLKDEIERCEELGIRLLVF 104 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 22222222234567788999999998766
No 244
>PF05005 Ocnus: Janus/Ocnus family (Ocnus); InterPro: IPR007702 This family is comprised of the Ocnus, Janus-A and Janus-B proteins. These proteins have been found to be testes specific in Drosophila melanogaster [].; PDB: 2OZX_A 2OZW_A 2NMM_C 2AI6_A 2HW4_A.
Probab=22.82 E-value=73 Score=27.71 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=10.7
Q ss_pred EEEEeeEEeeecc
Q 042717 373 RCIGSGVILESWD 385 (474)
Q Consensus 373 ~~lGgG~I~~~~~ 385 (474)
.|||||.|....+
T Consensus 62 ~clGGGrI~hd~~ 74 (108)
T PF05005_consen 62 ECLGGGRIEHDPD 74 (108)
T ss_dssp EEEEEEEEEEETT
T ss_pred EEeCCcEEEeCCC
Confidence 4999999987655
No 245
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.22 E-value=8.4e+02 Score=24.81 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=78.5
Q ss_pred cCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccch
Q 042717 41 AGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNT 120 (474)
Q Consensus 41 ~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr 120 (474)
.|+...-..+..++++ .|..-.+...+.|+++||.+..+.+.+.-.+
T Consensus 29 ~g~~p~Laii~vg~d~---------as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~------------------------ 75 (285)
T PRK14189 29 RGHQPGLAVILVGDNP---------ASQVYVRNKVKACEDNGFHSLKDRYPADLSE------------------------ 75 (285)
T ss_pred CCCCCeEEEEEeCCCc---------hHHHHHHHHHHHHHHcCCEEEEEECCCCCCH------------------------
Confidence 3665555555555433 2344567778999999999999998742111
Q ss_pred HHHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhhhcccc---ccccCCCHHH
Q 042717 121 RIKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI---FPLGCISKEE 197 (474)
Q Consensus 121 ~iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i---~PL~~ltK~E 197 (474)
..+.+..++++.|--.+|-... .|-+....+. .+....++.||= -++++..+.++. ..+.-.|=.-
T Consensus 76 ----~~l~~~I~~lN~d~~V~GIlvq--~Plp~~i~~~-~i~~~I~p~KDV----DGl~~~n~g~l~~~~~~~~PcTp~a 144 (285)
T PRK14189 76 ----AELLARIDELNRDPKIHGILVQ--LPLPKHIDSH-KVIEAIAPEKDV----DGFHVANAGALMTGQPLFRPCTPYG 144 (285)
T ss_pred ----HHHHHHHHHHcCCCCCCeEEEe--CCCCCCCCHH-HHHhhcCcccCc----ccCChhhhhHhhCCCCCCcCCCHHH
Confidence 1123333334444333333322 2222112222 233344555553 233332222222 1244567888
Q ss_pred HHHHHHHcCCCCcCCCCCcccccccccch-HHHHHhhhc
Q 042717 198 VRKFATQFDLPNKDRKDSQGICFLGKIKF-SEFVARHIG 235 (474)
Q Consensus 198 Vr~lA~~~GLp~~~k~~S~diCFl~~~~~-~~fL~~~~~ 235 (474)
|.++.+.+|++... ..+|-+++... ..=|..++.
T Consensus 145 ii~lL~~~~i~l~G----k~vvViGrs~iVGkPla~lL~ 179 (285)
T PRK14189 145 VMKMLESIGIPLRG----AHAVVIGRSNIVGKPMAMLLL 179 (285)
T ss_pred HHHHHHHcCCCCCC----CEEEEECCCCccHHHHHHHHH
Confidence 99999999987743 36788887654 444555543
No 246
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=22.19 E-value=4.8e+02 Score=24.20 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=6.2
Q ss_pred HHHcCCCEEEEEcc
Q 042717 78 CDQVDVPLEVVHLT 91 (474)
Q Consensus 78 a~~LGIpl~vvd~~ 91 (474)
+++.||+++++-+.
T Consensus 132 l~~~~I~v~~IgiG 145 (183)
T cd01453 132 LKKENIRVSVIGLS 145 (183)
T ss_pred HHHcCcEEEEEEec
Confidence 33444444444443
No 247
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=22.00 E-value=2.8e+02 Score=25.14 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=30.6
Q ss_pred CEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccchHHHHHHHHHHHHHcCCCEEEEceecc
Q 042717 84 PLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSMEFDYVASGHYAK 146 (474)
Q Consensus 84 pl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a~ 146 (474)
.+.++|+... -.+......+.-|..|- .++|++.|+|++++|-...
T Consensus 46 ~y~vVd~~~~---------~a~i~~~~~l~~C~gC~--------~~~Ar~~GAd~~lvG~VqK 91 (140)
T PF11684_consen 46 RYRVVDLAPV---------AAEIAAAQNLRKCNGCE--------ARIARELGADYVLVGEVQK 91 (140)
T ss_pred CeEEecCchh---------HHHhhccCCcccCCCHH--------HHHHHHcCCCEEEEEEEec
Confidence 4778887631 12223334566676664 4679999999999998765
No 248
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=21.57 E-value=5.6e+02 Score=27.80 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=27.1
Q ss_pred CCCCCCeEEEEEccchhHHHHHHHHHHcCCcEEEEEEE
Q 042717 14 PHQKGLKVAVLLSGGVDSSVALRLLHSAGHSCTAFYLK 51 (474)
Q Consensus 14 ~~~~~~kVlValSGGvDSsvaa~LLke~G~eV~gv~~~ 51 (474)
....++|+++. .||.++-.++.+|++.|.+|+++...
T Consensus 331 ~~L~GKrv~i~-~g~~~~~~~~~~l~ELGmevv~~g~~ 367 (466)
T TIGR01282 331 PRLEGKTVMLY-VGGLRPRHVIGAFEDLGMEVIGTGYE 367 (466)
T ss_pred HhcCCCEEEEE-CCCCcHHHHHHHHHHCCCEEEEEeee
Confidence 44467776655 57788887777899999999866553
No 249
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.34 E-value=8.1e+02 Score=25.10 Aligned_cols=135 Identities=7% Similarity=0.021 Sum_probs=69.6
Q ss_pred CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccchH
Q 042717 42 GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTR 121 (474)
Q Consensus 42 G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~ 121 (474)
|....-+.+..++++ .|..-.+..++.|+++||.+..+++.+...+
T Consensus 31 g~~P~LaiI~vg~d~---------as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~------------------------- 76 (297)
T PRK14168 31 GKVPGLVTILVGESP---------ASLSYVTLKIKTAHRLGFHEIQDNQSVDITE------------------------- 76 (297)
T ss_pred CCCCeEEEEEeCCCH---------HHHHHHHHHHHHHHHcCCEEEEEECCCCCCH-------------------------
Confidence 555544455554432 1334466778899999999999988643221
Q ss_pred HHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhhhcccc-----ccccCCCHH
Q 042717 122 IKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI-----FPLGCISKE 196 (474)
Q Consensus 122 iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i-----~PL~~ltK~ 196 (474)
.-+.+..++++.|--.+|-... .|-+...... .+....++.||= -++++..+.++. ..+.-.|=.
T Consensus 77 ---~el~~~I~~lN~D~~V~GIivq--lPlP~~i~~~-~i~~~I~p~KDV----DGl~~~n~g~l~~~~~~~~~~PcTp~ 146 (297)
T PRK14168 77 ---EELLALIDKYNNDDSIHGILVQ--LPLPKHINEK-KVLNAIDPDKDV----DGFHPVNVGRLMIGGDEVKFLPCTPA 146 (297)
T ss_pred ---HHHHHHHHHHhCCCCCCEEEEe--CCCCCCCCHH-HHHhccCccccc----cccChhhHHHHhcCCCCCCCcCCCHH
Confidence 1122333334444333333322 1211111121 233444555653 233332222221 124456778
Q ss_pred HHHHHHHHcCCCCcCCCCCccccccccc
Q 042717 197 EVRKFATQFDLPNKDRKDSQGICFLGKI 224 (474)
Q Consensus 197 EVr~lA~~~GLp~~~k~~S~diCFl~~~ 224 (474)
-|.++.+.+|++... ..+|-+++.
T Consensus 147 avi~lL~~~~i~l~G----k~vvViGrS 170 (297)
T PRK14168 147 GIQEMLVRSGVETSG----AEVVVVGRS 170 (297)
T ss_pred HHHHHHHHhCCCCCC----CEEEEECCC
Confidence 888888888887643 357777764
No 250
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=20.98 E-value=2.9e+02 Score=27.82 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=41.8
Q ss_pred CeEEEEEccchhHHHHHHHHHHc-CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcC----CCEEEEE
Q 042717 19 LKVAVLLSGGVDSSVALRLLHSA-GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVD----VPLEVVH 89 (474)
Q Consensus 19 ~kVlValSGGvDSsvaa~LLke~-G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LG----Ipl~vvd 89 (474)
+||++=.=+|+|-++|+.+|... ..+|.|++..++. +..+.....+.++.+.+| ||.+.=.
T Consensus 2 ~~viiDtD~g~DD~~Al~~~l~~~~i~i~gIt~~~Gn----------~~~~~~~~n~~~~l~~~g~~~~iPV~~G~ 67 (312)
T PF01156_consen 2 KKVIIDTDPGIDDALALALALASPEIEILGITTVFGN----------VSVEQAARNALRLLELAGGRDDIPVYKGA 67 (312)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHHTTEEEEEEEE-SSS----------S-HHHHHHHHHHHHHHTTTCSTS-EEEEE
T ss_pred cEEEEECCCChhHHHHHHHHHhCCCcEEEEEEEecCC----------cchHHHHHHHHHHHHHhcCCCccceeecc
Confidence 46778788899999888777765 5799999997653 223456778888888885 7777643
No 251
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.93 E-value=8.8e+02 Score=24.62 Aligned_cols=135 Identities=11% Similarity=0.101 Sum_probs=71.2
Q ss_pred CCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhhhHHHHhcCCCCCcccccchH
Q 042717 42 GHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTR 121 (474)
Q Consensus 42 G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~~i~~y~~G~tpNPci~Cnr~ 121 (474)
|+...-+.+..++++ +|..-.+.-.+.|+++||.+..+++.+.-.
T Consensus 29 g~~P~La~I~vg~d~---------as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~-------------------------- 73 (282)
T PRK14180 29 AITPKLVAIIVGNDP---------ASKTYVASKEKACAQVGIDSQVITLPEHTT-------------------------- 73 (282)
T ss_pred CCCCeEEEEEeCCCH---------HHHHHHHHHHHHHHHcCCEEEEEECCCCCC--------------------------
Confidence 665555555555432 133446667789999999999999864211
Q ss_pred HHHHHHHHHHHHcCCCEEEEceecccccCccCCCchhhHHhhhcCCcccccccccccChhhhcccc----ccccCCCHHH
Q 042717 122 IKFGAFMDAISSMEFDYVASGHYAKVVHSSADQEYKPSVLELSKDKVKDQTYFLSHLSQAQLKRLI----FPLGCISKEE 197 (474)
Q Consensus 122 iKf~~l~~~A~~~Gad~IATGH~a~~~~~~~dd~~~~~~L~~~~d~~kDQsyfL~~L~~~~L~~~i----~PL~~ltK~E 197 (474)
-..+.+..++++.|--.+|-... .|-+....+. .+....++.||=. ++++..+.++. ..+.-.|=.-
T Consensus 74 --~~el~~~I~~lN~D~~V~GIivq--~PlP~~i~~~-~i~~~I~p~KDVD----Gl~~~n~g~l~~g~~~~~~PcTp~a 144 (282)
T PRK14180 74 --ESELLELIDQLNNDSSVHAILVQ--LPLPAHINKN-NVIYSIKPEKDVD----GFHPTNVGRLQLRDKKCLESCTPKG 144 (282)
T ss_pred --HHHHHHHHHHHhCCCCCCeEEEc--CCCCCCCCHH-HHHhhcCcccccc----ccChhhHHHHhcCCCCCcCCCCHHH
Confidence 11123333444444433443322 2222111222 2334455666632 33332222221 2245568888
Q ss_pred HHHHHHHcCCCCcCCCCCccccccccc
Q 042717 198 VRKFATQFDLPNKDRKDSQGICFLGKI 224 (474)
Q Consensus 198 Vr~lA~~~GLp~~~k~~S~diCFl~~~ 224 (474)
|.++.+.+|++... ..++-+++.
T Consensus 145 ii~lL~~y~i~l~G----k~vvViGrS 167 (282)
T PRK14180 145 IMTMLREYGIKTEG----AYAVVVGAS 167 (282)
T ss_pred HHHHHHHhCCCCCC----CEEEEECCC
Confidence 89999999887643 256777764
No 252
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=20.92 E-value=2.9e+02 Score=22.80 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=18.2
Q ss_pred EEEEEecCCccCCCCC------ceEEEEeCCEEEEeeEE
Q 042717 348 IAVVQLSEDDQGLAAG------QFAAFYQGTRCIGSGVI 380 (474)
Q Consensus 348 ~~~v~f~ep~~avapG------Q~av~Y~g~~~lGgG~I 380 (474)
.+++++.+|. .+.|. +..+|-|++..+|.|.|
T Consensus 67 ~v~l~~~~pi-~~e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 67 IVKIVPQKPL-VVETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEEEEECCee-EEEEcccCCCccCEEEEeCCCEEEEEEC
Confidence 3455556664 34452 33444567777777765
No 253
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=20.72 E-value=2.2e+02 Score=24.63 Aligned_cols=46 Identities=9% Similarity=0.147 Sum_probs=27.0
Q ss_pred HHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcch
Q 042717 38 LHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTD 92 (474)
Q Consensus 38 Lke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~ 92 (474)
|++.|..+.-+.+..+.+++ |..-.+..++.|+.+||.+..+.+.+
T Consensus 23 l~~~~~~P~Laii~vg~d~~---------S~~Y~~~k~k~~~~~Gi~~~~~~l~~ 68 (117)
T PF00763_consen 23 LKEKGITPKLAIILVGDDPA---------SISYVRSKQKAAEKLGIEFELIELPE 68 (117)
T ss_dssp HHHCT---EEEEEEES--HH---------HHHHHHHHHHHHHHHT-EEEEEEE-T
T ss_pred HHhcCCCcEEEEEecCCChh---------HHHHHHHHHHHHHHcCCceEEEECCC
Confidence 34447777766676654321 23346677899999999999998853
No 254
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=20.65 E-value=6.8e+02 Score=26.53 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=25.4
Q ss_pred CCCCeEEEEEccchhHHH-HHHHHHHcCCcEEEEEEEc
Q 042717 16 QKGLKVAVLLSGGVDSSV-ALRLLHSAGHSCTAFYLKI 52 (474)
Q Consensus 16 ~~~~kVlValSGGvDSsv-aa~LLke~G~eV~gv~~~~ 52 (474)
..++||+|. |+-|... ++.+|.+.|.+|..+...+
T Consensus 297 l~gk~v~i~--~~~~~~~~l~~~L~e~G~~v~~v~~~~ 332 (428)
T cd01965 297 LGGKRVAIA--GDPDLLLGLSRFLLEMGAEPVAAVTGT 332 (428)
T ss_pred hcCCEEEEE--cChHHHHHHHHHHHHcCCcceEEEEcC
Confidence 356788766 6777666 5567888899998877654
No 255
>PLN02428 lipoic acid synthase
Probab=20.58 E-value=4.8e+02 Score=27.40 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCCEEEEceeccc
Q 042717 123 KFGAFMDAISSMEFDYVASGHYAKV 147 (474)
Q Consensus 123 Kf~~l~~~A~~~Gad~IATGH~a~~ 147 (474)
.|..+.++|.++|+.+|+.|-..+-
T Consensus 302 ~f~~~~~~~~~~gf~~v~sgp~vrs 326 (349)
T PLN02428 302 KFEFWREYGEEMGFRYVASGPLVRS 326 (349)
T ss_pred HHHHHHHHHHHcCCceEEecCcccc
Confidence 4888899999999999999988763
No 256
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=20.45 E-value=89 Score=28.44 Aligned_cols=31 Identities=19% Similarity=0.055 Sum_probs=25.7
Q ss_pred EEEEEccc--hhHHHHHHHHHHcCCcEEEEEEE
Q 042717 21 VAVLLSGG--VDSSVALRLLHSAGHSCTAFYLK 51 (474)
Q Consensus 21 VlValSGG--vDSsvaa~LLke~G~eV~gv~~~ 51 (474)
.+||+|-= .+|-..+..|+++||+|+.|+=.
T Consensus 20 AvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~ 52 (140)
T COG1832 20 AVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPK 52 (140)
T ss_pred EEEecCCCCCccHHHHHHHHHHCCCEEEeeCcc
Confidence 66799974 67888999999999999998653
No 257
>PRK08064 cystathionine beta-lyase; Provisional
Probab=20.26 E-value=5.6e+02 Score=26.80 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=56.2
Q ss_pred EEEEccchhHHHHHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHHhHHHHHHHHHHcCCCEEEEEcchHHHHhhHhh
Q 042717 22 AVLLSGGVDSSVALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEEDMKYAKAVCDQVDVPLEVVHLTDEYWKNVVSY 101 (474)
Q Consensus 22 lValSGGvDSsvaa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~d~~~a~~va~~LGIpl~vvd~~~~f~~~V~~~ 101 (474)
.+++|-|.....++..+.+.|-+|+.....+ .........+++.+|+++..+++.+. +.+
T Consensus 72 ~v~~~sG~~ai~~~l~~l~~Gd~Vlv~~~~y---------------~~~~~~~~~~~~~~G~~v~~v~~~d~--~~l--- 131 (390)
T PRK08064 72 GFAFASGMAAISTAFLLLSKGDHVLISEDVY---------------GGTYRMITEVLSRFGIEHTFVDMTNL--EEV--- 131 (390)
T ss_pred eEEECCHHHHHHHHHHHhCCCCEEEEccCcc---------------chHHHHHHHHHHHcCCEEEEECCCCH--HHH---
Confidence 5677888876555554555576665432211 11234455678889999999987531 111
Q ss_pred hHHHHhcCCC-------C-CcccccchHHHHHHHHHHHHHcCCCEEEEceec
Q 042717 102 IIEEYRCGRT-------P-NPDVLCNTRIKFGAFMDAISSMEFDYVASGHYA 145 (474)
Q Consensus 102 ~i~~y~~G~t-------p-NPci~Cnr~iKf~~l~~~A~~~Gad~IATGH~a 145 (474)
++....+| | ||--.+.. ...+.+++++.|+-.|+-+.++
T Consensus 132 --~~~l~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~ 178 (390)
T PRK08064 132 --AQNIKPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFL 178 (390)
T ss_pred --HHhcCCCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCC
Confidence 11111111 2 34333322 4567888999998888777655
No 258
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=20.06 E-value=83 Score=26.23 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=30.3
Q ss_pred ccCCCHHHHHHHHHHcCCCCcCCCCCccccccc-ccchHHHHHhhh
Q 042717 190 LGCISKEEVRKFATQFDLPNKDRKDSQGICFLG-KIKFSEFVARHI 234 (474)
Q Consensus 190 L~~ltK~EVr~lA~~~GLp~~~k~~S~diCFl~-~~~~~~fL~~~~ 234 (474)
+.+++|..||.+|+.-|+.-.. +.||-. ++-++.||++.+
T Consensus 27 IqgitKpaIRRlARr~GVkRi~-----G~~yeE~~~~~k~fl~n~i 67 (103)
T KOG3467|consen 27 IQGITKPAIRRLARRGGVKRIS-----GLIYEETRGVLKVFLENVI 67 (103)
T ss_pred ccccchHHHHHHHHhcCcchhc-----hhhHHHHHHHHHHHHHHHH
Confidence 4578999999999999986643 788853 345778887754
No 259
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=20.03 E-value=3.1e+02 Score=28.99 Aligned_cols=52 Identities=4% Similarity=0.144 Sum_probs=34.1
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCCCcccccCCCCCHH----hH---HHHHHHHHHcCCCEEEEEcchHH
Q 042717 34 ALRLLHSAGHSCTAFYLKIWFQEDFENFWTECPWEE----DM---KYAKAVCDQVDVPLEVVHLTDEY 94 (474)
Q Consensus 34 aa~LLke~G~eV~gv~~~~~~~~~~~~~~~~c~s~~----d~---~~a~~va~~LGIpl~vvd~~~~f 94 (474)
++..+++.|.++.|+|+..+.+ |...+ .+ ..+-+.++.+|+++.++|+.--|
T Consensus 155 ~l~~~~~~~l~~~Gih~HiGS~---------~~~~~~~~~a~~~~~~~~~~~~~~g~~l~~ldiGGGf 213 (394)
T cd06831 155 LLECAKELDVQIVGVKFHVSSS---------CKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIGGGF 213 (394)
T ss_pred HHHHHHHCCCeEEEEEEECCCC---------CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEeCCCc
Confidence 3344566699999999998642 22222 22 22345577889999999997544
Done!